Psyllid ID: psy15482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSYHATPAAVIPNFDFSGIVVPSASSSSSNGQSSNSLSDDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGDKKKALAALLAKSLIF
Secondary Structure (PSIPRED)
cEEEEEEccccEEEEEEccccccHHHHHHHHHHHHccccccEEEEEccEEcccccccHHHcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccEEEEEEEEcccccccccHHHHHHcccHHHHHHccccEEEEEcccEEEEEEEEEEEEEccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccEEEEEccccccHHHHHHHHHHHccccHHcEEEEEcccccccccccHHHcccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcEEEEEEEEEEEEcccEEEEEEcccccHEEccHHHHHHcccHHHHHHHHccEEEcccccEEEEEEEEEEEEEccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkvtvstqhtnecflldvseDLELENFKAFCevqsgypaheIAIEFQGVLLQDNkktlkthgiqdgDLVLLKHlgsyhatpaavipnfdfsgivvpsasssssngqssnslsddpaTVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMlnahpfdtEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKvngypvkafidsgaqTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGDKKKALAALLAKSLIF
Flexible Loop (DISEMBL)
mkvtvstqhtnecflLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSYHATPAAVIPNFDFSGIVVPSASSSSSNGQSSNSLSDDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEltnfngdkKKALAALLAKSLIF
Low Complexity Region (SEG)
MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSYHATPAAVIPNFDFSGIVVPsasssssngqssnslsDDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIlrqqyeerekreqlrlrmlNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGDkkkalaallakslIF
Disordered region (IsUnstruct)
*********TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSYHATPAAVIPNFDFSGIVV*****************************************************************************************LIAEEI***NIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGDKKKALAALLA*****
Disordered Region (DISOPRED)
MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVL****************************************************************************SPEDFE*********************************IAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGDKKKALAALLAKSLIF
Disordered Region (DISEMBL)
********HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSYHATPAAVIPNFDFSGIVVP******************PATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGDKKKALAALLAKSLIF
Disordered Region (DISPRO)
MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS***********************************SDDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGDKKKALAALLAKSLIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSYHATPAAVIPNFDFSGIVVPSASSSSSNGQSSNSLSDDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGDKKKALAALLAKSLIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q7ZYA7	393	Protein DDI1 homolog 2 OS	N/A	N/A	0.874	0.671	0.534	2e-81
Q497D6	394	Protein DDI1 homolog 2 OS	yes	N/A	0.874	0.670	0.532	1e-79
Q5TDH0	399	Protein DDI1 homolog 2 OS	yes	N/A	0.874	0.661	0.526	1e-78
A2ADY9	399	Protein DDI1 homolog 2 OS	yes	N/A	0.874	0.661	0.516	2e-77
Q6TH22	411	Protein DDI1 homolog 2 OS	yes	N/A	0.870	0.639	0.503	5e-77
Q8WTU0	396	Protein DDI1 homolog 1 OS	no	N/A	0.874	0.666	0.491	7e-72
Q95JI3	396	Protein DDI1 homolog 1 OS	N/A	N/A	0.874	0.666	0.487	6e-71
A0JPP7	408	Protein DDI1 homolog 1 OS	no	N/A	0.887	0.656	0.464	9e-71
Q9DAF3	408	Protein DDI1 homolog 1 OS	no	N/A	0.887	0.656	0.461	1e-69
Q2T9Z1	396	Protein DDI1 homolog 1 OS	no	N/A	0.874	0.666	0.480	9e-69

>sp|Q7ZYA7|DDI2_XENLA Protein DDI1 homolog 2 OS=Xenopus laevis GN=ddi2 PE=2 SV=1

 Score =  302 bits (774), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/275 (53%), Positives = 195/275 (70%), Gaps = 11/275 (4%)

Query: 14  FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73
           F L+V  D ELENF+A CE++SG PA +  I +    L DN+++L ++G++DGD+V+L+ 
Sbjct: 17  FSLEVDGDFELENFRALCELESGIPASDTLIVYAERPLTDNQRSLASYGLKDGDVVILRQ 76

Query: 74  LGSYHATPAAVIPNFDFSGIVVPSASSSSS-----------NGQSSNSLSDDPATVRQLL 122
             +    PAA  P  DFS I VP ASS              +  S     D+PA +RQ+L
Sbjct: 77  KEAPETRPAAPFPGLDFSTIAVPGASSQPDPSQPQAPPPPPDTSSFPQGLDNPALLRQML 136

Query: 123 LDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEA 182
           L NP E++LL++ NP LA+ALL+G  E F ++L++Q +ER +REQ R+R+ +A PFD +A
Sbjct: 137 LANPHELSLLKERNPPLAEALLSGDLEKFTKVLQEQQQERARREQERIRLYSADPFDLDA 196

Query: 183 QKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSL 242
           Q  I E+I+++NIE NM  AME  PE+FG VVMLYINCKVNGYPVKAF+DSGAQ TIMS 
Sbjct: 197 QAKIEEDIRQHNIEENMTIAMEEAPESFGQVVMLYINCKVNGYPVKAFVDSGAQMTIMSQ 256

Query: 243 ACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
           ACAER +IMRL+D RWAGIAKGVG QKI+GR+H+A
Sbjct: 257 ACAERCHIMRLVDRRWAGIAKGVGTQKIIGRVHLA 291

Xenopus laevis (taxid: 8355)

>sp|Q497D6|DDI2_XENTR Protein DDI1 homolog 2 OS=Xenopus tropicalis GN=ddi2 PE=2 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/276 (53%), Positives = 195/276 (70%), Gaps = 12/276 (4%)

Query: 14  FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73
           F L+V  D ELENF+A CE++SG PA E  I +    L +N+++L ++G++DGD+V+L+ 
Sbjct: 17  FSLEVDGDFELENFRALCELESGIPASETLIVYAERPLTNNQRSLASYGLKDGDVVILRQ 76

Query: 74  LGSYHATPAAVIPNFDFSGIVVPSASSSSS------------NGQSSNSLSDDPATVRQL 121
             +  A PAA  P  DFS I VP +SS  +            +  S     D+PA +R++
Sbjct: 77  RETPEARPAAPFPGLDFSTIAVPGSSSQPAPSQPQAPPPPPPDTSSFPQGLDNPALLREM 136

Query: 122 LLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTE 181
           LL NP E++LL++ NP LA+ALL+G  E F ++L +Q +ER +REQ R+R+ +A PFD E
Sbjct: 137 LLANPHELSLLKERNPPLAEALLSGDLEKFTKVLLEQQQERARREQERIRLYSADPFDLE 196

Query: 182 AQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMS 241
           AQ  I E+I++ NIE NM  AME  PE+FG VVMLYINCKVNGYPVKAF+DSGAQ TIMS
Sbjct: 197 AQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGYPVKAFVDSGAQMTIMS 256

Query: 242 LACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
            ACAER +IMRL+D RWAGIAKGVG QKI+GR+H+A
Sbjct: 257 QACAERCHIMRLVDRRWAGIAKGVGTQKIIGRVHLA 292

Xenopus tropicalis (taxid: 8364)

>sp|Q5TDH0|DDI2_HUMAN Protein DDI1 homolog 2 OS=Homo sapiens GN=DDI2 PE=1 SV=1

 Score =  293 bits (750), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/281 (52%), Positives = 192/281 (68%), Gaps = 17/281 (6%)

Query: 14  FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73
           F L V  D EL NF+A CE++SG PA E  I +    L DN ++L ++G++DGD+V+L+ 
Sbjct: 17  FSLQVDADFELHNFRALCELESGIPAAESQIVYAERPLTDNHRSLASYGLKDGDVVILRQ 76

Query: 74  LGSYHATPAAVIPNF---DFSGIVVPSASSS------------SSNGQSSNSLS--DDPA 116
             +    P    PN    DFS I VP  SS             SS G+ ++S    D+PA
Sbjct: 77  KENADPRPPVQFPNLPRIDFSSIAVPGTSSPRQRQPPGTQQSHSSPGEITSSPQGLDNPA 136

Query: 117 TVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAH 176
            +R +LL NP E++LL++ NP LA+ALL+G  E F R+L +Q ++R +REQ R+R+ +A 
Sbjct: 137 LLRDMLLANPHELSLLKERNPPLAEALLSGDLEKFSRVLVEQQQDRARREQERIRLFSAD 196

Query: 177 PFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQ 236
           PFD EAQ  I E+I++ NIE NM  AME  PE+FG VVMLYINCKVNG+PVKAF+DSGAQ
Sbjct: 197 PFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVDSGAQ 256

Query: 237 TTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
            TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A
Sbjct: 257 MTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLA 297

Homo sapiens (taxid: 9606)

>sp|A2ADY9|DDI2_MOUSE Protein DDI1 homolog 2 OS=Mus musculus GN=Ddi2 PE=1 SV=1

 Score =  289 bits (740), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/281 (51%), Positives = 193/281 (68%), Gaps = 17/281 (6%)

Query: 14  FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73
           F L V  D EL NF+A CE++SG PA E  I +    L DN ++L ++G++DGD+V+L+ 
Sbjct: 17  FSLQVDADFELHNFRALCELESGIPAAESQIVYAERPLTDNHRSLASYGLKDGDVVILRQ 76

Query: 74  LGSYHATPA---AVIPNFDFSGIVVPSASSS------------SSNGQSSNSLS--DDPA 116
             +    PA   + +P  DFS I VP  S+             SS G+ ++S    D+PA
Sbjct: 77  KENADPRPAVQFSNLPRIDFSSIAVPGTSNPQQRQLPRTQAQHSSPGEMASSPQGLDNPA 136

Query: 117 TVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAH 176
            +R +LL NP E++LL++ NP LA+ALL+G  E F R+L +Q ++R +REQ R+R+ +A 
Sbjct: 137 LLRDMLLANPHELSLLKERNPPLAEALLSGDLEKFSRVLVEQQQDRARREQERIRLFSAD 196

Query: 177 PFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQ 236
           PFD EAQ  I E+I++ NIE NM  AME  PE+FG V MLYINC+VNG+PVKAF+DSGAQ
Sbjct: 197 PFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVAMLYINCRVNGHPVKAFVDSGAQ 256

Query: 237 TTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
            TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A
Sbjct: 257 MTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLA 297

Mus musculus (taxid: 10090)

>sp|Q6TH22|DDI2_DANRE Protein DDI1 homolog 2 OS=Danio rerio GN=ddi2 PE=2 SV=1

 Score =  288 bits (736), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 147/292 (50%), Positives = 192/292 (65%), Gaps = 29/292 (9%)

Query: 14  FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73
           F LDVS +LEL +F A CE++SG PA EI I +    LQD  + L  +G++DGD+++L+ 
Sbjct: 17  FALDVSPELELRDFLALCELESGIPAGEIQIIYAEQPLQDPTRALGNYGLKDGDVLVLRQ 76

Query: 74  LGSYHATPAAVIPNF---DFSGIVVPSASS-------------------------SSSNG 105
                A P   +P     DFS I VP  SS                         S  +G
Sbjct: 77  AERLRAPPQPTVPGLPRIDFSSIAVPGTSSGQNRNRPQQAQRPSTTQPPPPQATTSPGSG 136

Query: 106 QSSNSLSDDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKR 165
            S   L D+PA +R +LL NP E++LL++ NP LA+ALL+G  E F ++L +Q ++R +R
Sbjct: 137 VSPQGL-DNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLERFTKVLMEQQQDRARR 195

Query: 166 EQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGY 225
           +Q R+++L A PFD +AQ  I EEI+++NIE NM  AME  PE+FG VVMLYINCKVNG+
Sbjct: 196 DQERIKLLTADPFDLDAQAKIEEEIRQHNIEENMTIAMEEAPESFGQVVMLYINCKVNGH 255

Query: 226 PVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
           PVKAF+DSGAQ TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A
Sbjct: 256 PVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLA 307

Danio rerio (taxid: 7955)

>sp|Q8WTU0|DDI1_HUMAN Protein DDI1 homolog 1 OS=Homo sapiens GN=DDI1 PE=1 SV=1

 Score =  270 bits (691), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 142/289 (49%), Positives = 183/289 (63%), Gaps = 25/289 (8%)

Query: 14  FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLL-- 71
           F L VS D EL NFK  CE +S  P  EI I     LL ++  +L ++G++DGD+V+L  
Sbjct: 17  FSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCSLGSYGLKDGDIVVLLQ 76

Query: 72  -KHLGSYHATPAAVIPNFDFSGIVVPSASSS-----------SSNGQSSNSLSD------ 113
             ++G      A   P  DFSGI VP  SSS           +   Q S  L+       
Sbjct: 77  KDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAG 136

Query: 114 -----DPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQL 168
                 PA +R +LL NP +++LL++ NP LA+ALL+GS E F ++L +Q  E+  REQ 
Sbjct: 137 LQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFSQVLMEQQREKALREQE 196

Query: 169 RLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVK 228
           RLR+  A P D EAQ  I EEI++ NIE NM  A+E  PE+FG V MLYINCKVNG+P+K
Sbjct: 197 RLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQVTMLYINCKVNGHPLK 256

Query: 229 AFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
           AF+DSGAQ TIMS ACAER NIMRL+D RWAG+AKGVG Q+I+GR+H+A
Sbjct: 257 AFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLA 305

Homo sapiens (taxid: 9606)

>sp|Q95JI3|DDI1_MACFA Protein DDI1 homolog 1 OS=Macaca fascicularis GN=DDI1 PE=2 SV=1

 Score =  267 bits (683), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 141/289 (48%), Positives = 182/289 (62%), Gaps = 25/289 (8%)

Query: 14  FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLL-- 71
           F L VS D EL NFK  CE +S  PA EI I     LL ++  +L ++G++DGD+V+L  
Sbjct: 17  FSLQVSPDFELRNFKVLCEAESRVPAEEIQIIHMERLLIEDHCSLGSYGLKDGDVVVLLQ 76

Query: 72  -KHLGSYHATPAAVIPNFDFSGIVVPSASSS-----------SSNGQSSNSLSD------ 113
             ++G      A   P  DFSGI VP  SSS           +   Q S+ L+       
Sbjct: 77  KDNVGPRAPGRAPNQPRIDFSGIAVPGTSSSRPQHPGQQQQRTPAAQRSHGLASGETVGV 136

Query: 114 -----DPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQL 168
                 P  +R +LL NP +++LL++ NP LA+ALL+GS E F ++L  Q  E+  REQ 
Sbjct: 137 PQGLGSPGLIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFSQVLMAQQREKALREQE 196

Query: 169 RLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVK 228
           RL +  A P D EAQ  I EEI++ NIE NM  A+E  PE+FG V MLYINCKVNG+P+K
Sbjct: 197 RLHLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQVTMLYINCKVNGHPLK 256

Query: 229 AFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
           AF+DSGAQ TIMS ACAER NIMRL+D RWAG+AKGVG Q+I+GR+H+A
Sbjct: 257 AFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLA 305

Macaca fascicularis (taxid: 9541)

>sp|A0JPP7|DDI1_RAT Protein DDI1 homolog 1 OS=Rattus norvegicus GN=Ddi1 PE=2 SV=1

 Score =  267 bits (682), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 139/299 (46%), Positives = 185/299 (61%), Gaps = 31/299 (10%)

Query: 10  TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLV 69
           T   F L V+ D EL NF+  CE++SG PA E  I +   LL D+  +L ++G++DGD+V
Sbjct: 13  TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMV 72

Query: 70  LLKHLGSYHATPAAVIPN-----FDFSGIVVPSASSSSS---------------NGQSSN 109
           +L    +    P    PN     F  SG  VP  SSS                 + Q ++
Sbjct: 73  VLLQKDNVGPRPPGRAPNHPRTDFTGSGSAVPGTSSSRHPHPHQHHHHQHQRIPSTQQAH 132

Query: 110 SLS-----------DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQ 158
            L+           + PA +R +LL NP +++LL++ NP LA+ALL+G+ E F ++L +Q
Sbjct: 133 GLASGENMAFAQDLNSPALIRSMLLSNPHDLSLLKERNPALAEALLSGNLETFSQVLVEQ 192

Query: 159 YEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYI 218
             ER  REQ   R+ +A PFD E Q  I EEI++ NIE NM  AME  PE+FG V MLYI
Sbjct: 193 QRERAMREQEMFRLYSADPFDQETQARIEEEIRQQNIEENMNIAMEEAPESFGQVAMLYI 252

Query: 219 NCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
           NCKVNG+P+KAF+DSGAQ TIMS ACAER NIMRL+D RWAG+AKGVG Q+I+GR+H+A
Sbjct: 253 NCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIMGRVHLA 311

Rattus norvegicus (taxid: 10116)

>sp|Q9DAF3|DDI1_MOUSE Protein DDI1 homolog 1 OS=Mus musculus GN=Ddi1 PE=1 SV=1

 Score =  263 bits (673), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/299 (46%), Positives = 185/299 (61%), Gaps = 31/299 (10%)

Query: 10  TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLV 69
           T   F L V+ D EL NF+  CE++SG PA E  I +   LL D+  +L ++G++DGD+V
Sbjct: 13  TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMV 72

Query: 70  LLKH-----LGSYHATPAAVIPNFDFSGIVVPSASSSSS---------------NGQSSN 109
           +L       L +   TP     +F  SG  VP  SSS                 + Q ++
Sbjct: 73  VLLQKDNVGLRTPGRTPNHPRADFTGSGSAVPGTSSSRHPHQHQHHYHHHQRIPSTQQAH 132

Query: 110 SLS-----------DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQ 158
            L+           D PA +R +LL NP +++LL++ NP LA+ALL+G+ E F ++L +Q
Sbjct: 133 GLASGENMTFAQELDSPALIRSMLLSNPHDLSLLKERNPALAEALLSGNLETFSQVLMEQ 192

Query: 159 YEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYI 218
             ER  REQ   R+ + +PFD E Q  I EEI++ NIE NM  AME  PE+FG V MLYI
Sbjct: 193 QRERTLREQEMFRLYSTNPFDQETQARIEEEIRQQNIEENMNIAMEEAPESFGQVAMLYI 252

Query: 219 NCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
           NCKVNG+P+KAF+DSGAQ TIMS ACAER NIMRL+D RW G+AKGVG Q+I+GR+H+A
Sbjct: 253 NCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWGGVAKGVGTQRIMGRVHLA 311

Mus musculus (taxid: 10090)

>sp|Q2T9Z1|DDI1_BOVIN Protein DDI1 homolog 1 OS=Bos taurus GN=DDI1 PE=2 SV=1

 Score =  260 bits (664), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 136/283 (48%), Positives = 185/283 (65%), Gaps = 19/283 (6%)

Query: 14  FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLV-LLK 72
           F L V  D EL NF   CE++SG PA E  I +   LL ++  +L ++G++DGD+V LL+
Sbjct: 17  FSLQVRPDFELHNFLVLCELESGIPAEETQIVYMERLLVNDHCSLGSYGLKDGDMVILLQ 76

Query: 73  HLGSYHATP--AAVIPNFDFSGIVVPSASSSSSN--GQSSNSLS--------------DD 114
                  +P  AA + + + +G  +P  S S  +   QS+   S              D 
Sbjct: 77  KEAMRPRSPERAAGLCSMEPAGPALPGTSGSRPHQRAQSAQHSSRRGSGEKAGPGQGLDS 136

Query: 115 PATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLN 174
           PA VR +LL +P +++LL++ NP LA+ALL+G+ E F ++L +Q  ER  REQ RLR+ +
Sbjct: 137 PALVRSMLLSSPHDLSLLKERNPSLAEALLSGNLESFSQVLMEQQRERALREQERLRLFS 196

Query: 175 AHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSG 234
           A PFD EAQ  I EEI++ NIE NM  AME  PE+FG V MLYINC+VNG+P+KAF+DSG
Sbjct: 197 ADPFDLEAQAKIEEEIRQQNIEENMSIAMEEAPESFGQVAMLYINCRVNGHPLKAFVDSG 256

Query: 235 AQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
           AQ TIM+  CAER NI+RL+D RWAG+AKGVG Q+ILGR+H+A
Sbjct: 257 AQMTIMNQVCAERCNIIRLVDRRWAGVAKGVGTQRILGRVHLA 299

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
270007166	448	hypothetical protein TcasGA2_TC013702 [T	0.900	0.607	0.663	1e-104
322799330	459	hypothetical protein SINV_11449 [Solenop	0.937	0.616	0.624	1e-104
189237227	452	PREDICTED: similar to DNA-damage inducib	0.900	0.601	0.657	1e-103
307188581	456	Protein DDI1-like protein 2 [Camponotus	0.937	0.620	0.632	1e-101
332021102	453	Protein DDI1-like protein 2 [Acromyrmex	0.937	0.624	0.629	1e-101
307191967	399	Protein DDI1-like protein 2 [Harpegnatho	0.923	0.699	0.626	1e-101
114051417	389	DNA-damage inducible protein [Bombyx mor	0.907	0.704	0.618	1e-100
332374366	399	unknown [Dendroctonus ponderosae]	0.910	0.689	0.632	2e-99
340729851	467	PREDICTED: protein DDI1 homolog 2-like [	0.923	0.597	0.581	8e-96
380020373	465	PREDICTED: protein DDI1 homolog 2-like [	0.923	0.6	0.578	2e-95

>gi|270007166|gb|EFA03614.1| hypothetical protein TcasGA2_TC013702 [Tribolium castaneum]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/282 (66%), Positives = 229/282 (81%), Gaps = 10/282 (3%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T  T+  F+LDVSEDLELENFKAFCEV++G+PA EI I + G+ L DNKK+LK 
Sbjct: 1   MKVTVTT-LTDFIFVLDVSEDLELENFKAFCEVETGFPATEIVIAYNGMPLMDNKKSLKE 59

Query: 61  HGIQDGDLVLLKHLGSYHATPAAV----IPNFDFSGIVVPSASSSS--SNGQSSNSLSDD 114
           HGI+DGD V L+H+  + A+ ++     +P  DFSGI VP+++  +  S G+ S    DD
Sbjct: 60  HGIRDGDAVCLQHMLQHGASQSSFDLQGVPRLDFSGIQVPNSTRGNQVSPGRPSE---DD 116

Query: 115 PATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLN 174
           P  +R + L NP ++ALL+QNNPRLADALL G+ + F  +LR+Q + R++REQ RLRMLN
Sbjct: 117 PVLIRDMFLANPDQLALLKQNNPRLADALLTGNIDTFASVLREQVQARQEREQQRLRMLN 176

Query: 175 AHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSG 234
           A PFDTEAQ+LIAEEI++ NIEANMEAAMEYNPE+FGTVVMLYINC+VNGYPVKAFIDSG
Sbjct: 177 ADPFDTEAQRLIAEEIRQKNIEANMEAAMEYNPESFGTVVMLYINCRVNGYPVKAFIDSG 236

Query: 235 AQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHM 276
           AQTTIMS +CAER NIMRL+DTRWAGIAKGVGVQKI+GRIHM
Sbjct: 237 AQTTIMSSSCAERCNIMRLVDTRWAGIAKGVGVQKIIGRIHM 278

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799330|gb|EFZ20718.1| hypothetical protein SINV_11449 [Solenopsis invicta]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/298 (62%), Positives = 231/298 (77%), Gaps = 15/298 (5%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T   +  F+LDVSE+LELENFKAFCE++SG PAHEI I F G+ L D+KK+L+ 
Sbjct: 1   MKVTVTTLSDDSVFVLDVSEELELENFKAFCEIESGVPAHEIVIAFNGLPLMDDKKSLRD 60

Query: 61  HGIQDGDLVLLKHLGSYHATPAAV--------IPNFDFSGIVVPSASSSS------SNGQ 106
           HGI+DGD V+L+H+   H + + +        IP  DFS I VP AS+S       +N +
Sbjct: 61  HGIRDGDAVILQHMHGMHQSGSDLNIQPFNRAIPLLDFSSIRVPGASNSQQRPSPIANNR 120

Query: 107 SSNSLS-DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKR 165
             N  S DDPA ++ + L NP ++ALL+QNNPRLADALL+G+ + F  +LR+Q   RE+R
Sbjct: 121 VQNPRSEDDPAMIKNMFLANPDQLALLKQNNPRLADALLSGNLDRFSTVLREQIAAREER 180

Query: 166 EQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGY 225
           +  RLRM+NA PFDTEAQ+LIAEEI++ NIEANMEAAMEYNPETFGTVVMLYINCKVNG+
Sbjct: 181 QAQRLRMMNADPFDTEAQRLIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCKVNGF 240

Query: 226 PVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283
           PVKAFIDSGAQTTIMS ACAER +IMRL+DTRWAG+AKGVGVQ+I+GRIHM   ++ N
Sbjct: 241 PVKAFIDSGAQTTIMSAACAERCHIMRLVDTRWAGVAKGVGVQRIIGRIHMVQIQIGN 298

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237227|ref|XP_969775.2| PREDICTED: similar to DNA-damage inducible protein [Tribolium castaneum]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/286 (65%), Positives = 229/286 (80%), Gaps = 14/286 (4%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T  T+  F+LDVSEDLELENFKAFCEV++G+PA EI I + G+ L DNKK+LK 
Sbjct: 1   MKVTVTT-LTDFIFVLDVSEDLELENFKAFCEVETGFPATEIVIAYNGMPLMDNKKSLKE 59

Query: 61  HGIQDGDLVLLKHLGSYHATPAAV-----IP---NFDFSGIVVPSASSSS--SNGQSSNS 110
           HGI+DGD V L+H+  + A+ ++      IP     DFSGI VP+++  +  S G+ S  
Sbjct: 60  HGIRDGDAVCLQHMLQHGASQSSFDLQGGIPPGSKLDFSGIQVPNSTRGNQVSPGRPSE- 118

Query: 111 LSDDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRL 170
             DDP  +R + L NP ++ALL+QNNPRLADALL G+ + F  +LR+Q + R++REQ RL
Sbjct: 119 --DDPVLIRDMFLANPDQLALLKQNNPRLADALLTGNIDTFASVLREQVQARQEREQQRL 176

Query: 171 RMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAF 230
           RMLNA PFDTEAQ+LIAEEI++ NIEANMEAAMEYNPE+FGTVVMLYINC+VNGYPVKAF
Sbjct: 177 RMLNADPFDTEAQRLIAEEIRQKNIEANMEAAMEYNPESFGTVVMLYINCRVNGYPVKAF 236

Query: 231 IDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHM 276
           IDSGAQTTIMS +CAER NIMRL+DTRWAGIAKGVGVQKI+GRIHM
Sbjct: 237 IDSGAQTTIMSSSCAERCNIMRLVDTRWAGIAKGVGVQKIIGRIHM 282

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188581|gb|EFN73309.1| Protein DDI1-like protein 2 [Camponotus floridanus]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/294 (63%), Positives = 229/294 (77%), Gaps = 11/294 (3%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T   +  F+LDVSE+LELENFKAFCE++SG PAHEI I F G+ L D+KK+L+ 
Sbjct: 1   MKVTVTTLSDDSVFVLDVSEELELENFKAFCEIESGVPAHEIVIAFNGLPLMDDKKSLRD 60

Query: 61  HGIQDGDLVLLKHL---GS-YHATP-AAVIPNFDFSGIVVPSASSSS-----SNGQSSNS 110
           HGI+DGD V+L+H+   GS  +  P    IP  DFS I +P  S+       +N +  N 
Sbjct: 61  HGIRDGDAVILQHMHQSGSDLNLQPFNRAIPLLDFSSIRIPDISNVQRQQPIANNRVQNP 120

Query: 111 LS-DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLR 169
            S DDPA +R + L NP ++ALL+QNNPRLADALL+G+ + F  +LR+Q   RE+R+  R
Sbjct: 121 RSEDDPALIRNMFLANPDQLALLKQNNPRLADALLSGNLDRFSTVLREQIAAREERQAQR 180

Query: 170 LRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKA 229
           LRM+NA PFDTEAQ+LIAEEI++ NIEANMEAAMEYNPETFGTVVMLYINCKVNG+PVKA
Sbjct: 181 LRMMNADPFDTEAQRLIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCKVNGFPVKA 240

Query: 230 FIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283
           FIDSGAQTTIMS ACAER +IMRL+DTRWAG+AKGVGVQ+I+GRIHM   ++ N
Sbjct: 241 FIDSGAQTTIMSAACAERCHIMRLVDTRWAGVAKGVGVQRIIGRIHMVQIQIGN 294

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021102|gb|EGI61489.1| Protein DDI1-like protein 2 [Acromyrmex echinatior]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/294 (62%), Positives = 229/294 (77%), Gaps = 11/294 (3%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T   +  F+LDVSE+LELENFKAFCE++SG PAHEI I F G+ L D+KK+L+ 
Sbjct: 1   MKVTVTTLSDDSVFVLDVSEELELENFKAFCEIESGVPAHEIVIAFNGLPLMDDKKSLRD 60

Query: 61  HGIQDGDLVLLKHL---GS-YHATP-AAVIPNFDFSGIVVPSAS-----SSSSNGQSSNS 110
           HGI+DGD V+L+H+   GS  +  P    IP  DFS I VP  S     S  +N +  N 
Sbjct: 61  HGIRDGDAVILQHMHQSGSDLNLQPFNRAIPLLDFSSIRVPGTSNNQRPSPIANNRVQNP 120

Query: 111 LS-DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLR 169
            S DDPA ++ + L NP ++ALL+QNNPRLADALL+G+ + F  +LR+Q   +E+R+  R
Sbjct: 121 RSEDDPAMIKNMFLANPDQLALLKQNNPRLADALLSGNLDRFSTVLREQIAAKEERQAQR 180

Query: 170 LRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKA 229
           LRM+NA PFDTEAQ+LIAEEI++ NIEANMEAAMEYNPETFGTVVMLYINCKVNG+PVKA
Sbjct: 181 LRMMNADPFDTEAQRLIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCKVNGFPVKA 240

Query: 230 FIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283
           FIDSGAQTTIMS ACAER +IMRL+DTRWAG+AKGVG+Q+I+GRIHM   ++ N
Sbjct: 241 FIDSGAQTTIMSAACAERCHIMRLVDTRWAGVAKGVGIQRIIGRIHMVQIQIGN 294

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191967|gb|EFN75357.1| Protein DDI1-like protein 2 [Harpegnathos saltator]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/297 (62%), Positives = 233/297 (78%), Gaps = 18/297 (6%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T  +++ F+LDVSE+LELENFKAFCE++SG PAHEI I F G+ L D+KK+L+ 
Sbjct: 1   MKVTVTTL-SDDIFVLDVSEELELENFKAFCEIESGVPAHEIVIAFNGLPLMDDKKSLRD 59

Query: 61  HGIQDGDLVLLKHL---GS-YHATP-AAVIPNFDFSGIVVPSASSSSSNGQSSNSLS--- 112
           HGI+DGD V+L+H+   GS  +  P    IP  DFS I VP    +S+N Q +NS S   
Sbjct: 60  HGIRDGDAVILQHMHQSGSDMNLQPFNRAIPLLDFSSIRVPG---TSNNRQPTNSNSNRV 116

Query: 113 ------DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKRE 166
                 DDPA ++ + L NP ++ALL+QNNPRLADALL+G+ + F  +LR+Q   RE+R+
Sbjct: 117 QNPRSEDDPAMIKNMFLANPDQLALLKQNNPRLADALLSGNLDRFSTVLREQINAREERQ 176

Query: 167 QLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYP 226
             RLRM+NA PFDTEAQ+LIAEEI++ NIEANMEAAMEYNPETFGTVVMLYINCKVNG+P
Sbjct: 177 AQRLRMMNADPFDTEAQRLIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCKVNGFP 236

Query: 227 VKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283
           VKAFIDSGAQTTIMS +CAER +IMRL+DTRWAG+AKGVG+Q+I+GRIHM   ++ N
Sbjct: 237 VKAFIDSGAQTTIMSASCAERCHIMRLVDTRWAGVAKGVGIQRIIGRIHMVQIQIGN 293

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051417|ref|NP_001040314.1| DNA-damage inducible protein [Bombyx mori] gi|87248309|gb|ABD36207.1| DNA-damage inducible protein [Bombyx mori]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/286 (61%), Positives = 225/286 (78%), Gaps = 12/286 (4%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T + ++ F+LDVSEDLELENFKAFCE++SG+PA +I + F G  L +NKK+LK 
Sbjct: 1   MKVTVTTLN-DDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKE 59

Query: 61  HGIQDGDLVLLKHL----------GSYHATPAAVIPNFDFSGIVVPSASSSSSNGQSSNS 110
           HG+ DGD+++L H+           S  A P+  I + DFS I VP+ S+++S    +  
Sbjct: 60  HGVHDGDVIILLHMVNSAQNLSVNDSSQALPSG-IASLDFSNIQVPTTSANTSMASRNTP 118

Query: 111 LSDDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRL 170
           + +DP  +R++ L NP ++ALL+QNNPRLADALL GS + F  +LR+Q   R +R+Q R+
Sbjct: 119 VEEDPRIIREMFLANPDQLALLKQNNPRLADALLTGSLDTFAAVLREQILARTERQQQRI 178

Query: 171 RMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAF 230
           RM+N+ PFDTEAQ++IAEEI++ NIEANMEAAMEYNPETFGTVVMLYINC VNG+PVKAF
Sbjct: 179 RMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAF 238

Query: 231 IDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHM 276
           IDSGAQTTIMS ACAER NIMRL+DTRWAGIAKGVGVQ+I+GRIHM
Sbjct: 239 IDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIHM 284

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374366|gb|AEE62324.1| unknown [Dendroctonus ponderosae]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/286 (63%), Positives = 221/286 (77%), Gaps = 11/286 (3%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T  T+  F+LDVSE+LELENFKAFCE++SG+PA EI I F G+ L DNKK+LK 
Sbjct: 1   MKVTVTTL-TDFIFVLDVSEELELENFKAFCEIESGFPASEIVIAFNGMPLMDNKKSLKD 59

Query: 61  HGIQDGDLVLLKHLGSYHAT---PAAVIPNFDFSGIVVPSASSSSSNGQSSNSLSDDPAT 117
            GI+DGD V+L+H+ S   T     + + +FDFS I VP       N   + +  DDP  
Sbjct: 60  LGIRDGDAVILQHMLSGSQTNIDQNSSVSSFDFSNIQVP-------NSMRNRNTEDDPVL 112

Query: 118 VRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHP 177
           +R + L NP ++ALL+QNNPRLADALL+G+ + F  +L+ Q   R++REQ RLRM NA P
Sbjct: 113 IRDMFLANPDQLALLKQNNPRLADALLSGNIDTFASVLKDQVTARQEREQQRLRMANADP 172

Query: 178 FDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQT 237
           FDTEAQ+LIAEEI++ NIEANMEAAMEYNPE+FGTVVMLYINC VNG+PVKAFIDSGAQT
Sbjct: 173 FDTEAQRLIAEEIRQKNIEANMEAAMEYNPESFGTVVMLYINCHVNGFPVKAFIDSGAQT 232

Query: 238 TIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283
           TIMS  CAER NIMRL+DTRWAGIAKGVGVQ+I+GRIHM   ++ N
Sbjct: 233 TIMSSRCAERCNIMRLVDTRWAGIAKGVGVQRIIGRIHMVQIQIEN 278

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729851|ref|XP_003403208.1| PREDICTED: protein DDI1 homolog 2-like [Bombus terrestris]

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 174/299 (58%), Positives = 225/299 (75%), Gaps = 20/299 (6%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T  +++ F+LDV ED+ELE+FKA CE++S  P HE+ I F G+ L ++KK+LK 
Sbjct: 1   MKVTVTTL-SDDIFVLDVIEDMELESFKALCEIESNVPVHEMVIAFNGLPLMNDKKSLKD 59

Query: 61  HGIQDGDLVLLKHLGSYHATPA--------AVIPNFDFSGIVVPSASSSSSNGQSSNSLS 112
           HGI+DGD+V+L+H+   H + A          IP  DFS I VP ASSS     SS++++
Sbjct: 60  HGIRDGDVVILQHM---HQSGAELNLHPLNGAIPMLDFSSIRVPGASSSRQPTASSSTIA 116

Query: 113 --------DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREK 164
                   DDP  +R + L NP ++ALL QNNP+LA ALL+G+ E F  +LR+Q + RE+
Sbjct: 117 RMQNPRKEDDPEIIRDMFLANPDQLALLSQNNPKLASALLSGNLERFTTVLREQIKVREE 176

Query: 165 REQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNG 224
           RE  RLRM+NA PFDTEAQ+ IAE+I++ NIEANMEAAMEYNPETFG+VVMLY+NCKVNG
Sbjct: 177 REAQRLRMMNADPFDTEAQRFIAEDIRQKNIEANMEAAMEYNPETFGSVVMLYVNCKVNG 236

Query: 225 YPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283
           +PVKAFID+GAQ+TIMS ACAER +IMRL+DTRWAGIA GVG Q+I+GRIHM   ++ N
Sbjct: 237 FPVKAFIDTGAQSTIMSDACAERCHIMRLVDTRWAGIAHGVGTQRIIGRIHMVQIQIGN 295

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020373|ref|XP_003694061.1| PREDICTED: protein DDI1 homolog 2-like [Apis florea]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/299 (57%), Positives = 225/299 (75%), Gaps = 20/299 (6%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           MKVTV+T  +++ F+LDV ED+ELE+FKA CE++S  P HE+ I F G+ L ++KK+LK 
Sbjct: 1   MKVTVTTL-SDDIFVLDVIEDMELESFKALCEIESNVPVHEMVIAFNGLPLMNDKKSLKD 59

Query: 61  HGIQDGDLVLLKHLGSYHATPA--------AVIPNFDFSGIVVPSASSSSSNGQSSNSLS 112
           HGI+DGD+V+L+H+   H + A          IP  DFS I VP AS+S     SS++++
Sbjct: 60  HGIRDGDVVILQHM---HQSGAELNLHPFNGAIPMLDFSSITVPGASNSRQPSASSSTIA 116

Query: 113 --------DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREK 164
                   DDP  +R + L NP ++ALL QNNP+LA ALL+G+ E F  +LR+Q + RE+
Sbjct: 117 RMQNPRKEDDPEIIRDMFLANPDQLALLSQNNPKLASALLSGNLEKFTTVLREQIKLREE 176

Query: 165 REQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNG 224
           RE  RLRM+NA PFDTEAQ+ IAE+I++ NIEANMEAAMEYNPETFG+VVMLYINCKVNG
Sbjct: 177 REAQRLRMMNADPFDTEAQRFIAEDIRQKNIEANMEAAMEYNPETFGSVVMLYINCKVNG 236

Query: 225 YPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283
           +PVKAFID+GAQ+TIMS ACAER +IMRL+D+RWAGIA GVG Q+I+GRIHM   ++ N
Sbjct: 237 FPVKAFIDTGAQSTIMSDACAERCHIMRLVDSRWAGIAHGVGTQRIIGRIHMVQIQIGN 295

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
FB|FBgn0030753	458	rngo "rings lost" [Drosophila	0.566	0.373	0.584	7.7e-66
UNIPROTKB|E2QUJ5	399	DDI2 "Uncharacterized protein"	0.559	0.423	0.585	7.7e-64
UNIPROTKB|F1SUU7	399	DDI2 "Uncharacterized protein"	0.559	0.423	0.585	2e-63
UNIPROTKB|E1B9T9	399	DDI2 "Uncharacterized protein"	0.559	0.423	0.585	2.6e-63
UNIPROTKB|Q5TDH0	399	DDI2 "Protein DDI1 homolog 2"	0.559	0.423	0.579	2.6e-63
ZFIN|ZDB-GENE-031030-15	411	ddi2 "DNA-damage inducible pro	0.559	0.411	0.573	4.2e-63
MGI|MGI:1917244	399	Ddi2 "DNA-damage inducible pro	0.559	0.423	0.568	1.1e-62
UNIPROTKB|F1MAK5	399	Ddi2 "Protein Ddi2" [Rattus no	0.559	0.423	0.568	2.9e-62
UNIPROTKB|F1SV49	401	DDI1 "Uncharacterized protein"	0.546	0.411	0.563	1.3e-61
UNIPROTKB|E1C2C2	332	DDI2 "Uncharacterized protein"	0.887	0.807	0.462	1.2e-60

FB|FBgn0030753 rngo "rings lost" [Drosophila melanogaster (taxid:7227)]

 Score = 511 (184.9 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
 Identities = 100/171 (58%), Positives = 121/171 (70%)

Query:   113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXX 172
             DDP TVRQ+ L +P+ ++LL+Q NP LA+A+ +G  E F R+                  
Sbjct:   138 DDPETVRQMFLSSPETLSLLRQYNPSLAEAIDSGDKEKFARLLREHITERKRRNEHRMRM 197

Query:   173 XNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFID 232
              NA PFD E Q+LIAEEIK+ NI+ NM AA+EYNPE FGTV MLYINCKVNG PVKAF+D
Sbjct:   198 LNADPFDEETQRLIAEEIKQKNIQDNMAAAIEYNPEIFGTVTMLYINCKVNGIPVKAFVD 257

Query:   233 SGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283
             SGAQTTIMS  CAER ++ RL+DTRW G+AKGVG Q ILGRIHM   ++ N
Sbjct:   258 SGAQTTIMSKDCAERCHVNRLIDTRWNGVAKGVGTQPILGRIHMVQLQIEN 308

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0007301 "female germline ring canal formation" evidence=IMP

GO:0070628 "proteasome binding" evidence=IPI

UNIPROTKB|E2QUJ5 DDI2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 501 (181.4 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 99/169 (58%), Positives = 121/169 (71%)

Query:   113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXX 172
             D+PA +R +LL NP E++LL++ NP LADALL+G  E F R+                  
Sbjct:   133 DNPALLRDMLLANPHELSLLKERNPPLADALLSGDLEKFSRVLVEQQQDRARREQERIRL 192

Query:   173 XNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFID 232
              +A PFD EAQ  I E+I++ NIE NM  AME  PE+FG VVMLYINCKVNG+PVKAF+D
Sbjct:   193 FSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVD 252

Query:   233 SGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEL 281
             SGAQ TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A  ++
Sbjct:   253 SGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQI 301

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1SUU7 DDI2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 501 (181.4 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
 Identities = 99/169 (58%), Positives = 121/169 (71%)

Query:   113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXX 172
             D+PA +R +LL NP E++LL++ NP LADALL+G  E F R+                  
Sbjct:   133 DNPALLRDMLLANPHELSLLKERNPPLADALLSGDLEKFSRVLVEQQQDRARREQERIRL 192

Query:   173 XNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFID 232
              +A PFD EAQ  I E+I++ NIE NM  AME  PE+FG VVMLYINCKVNG+PVKAF+D
Sbjct:   193 FSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVD 252

Query:   233 SGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEL 281
             SGAQ TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A  ++
Sbjct:   253 SGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQI 301

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|E1B9T9 DDI2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 500 (181.1 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
 Identities = 99/169 (58%), Positives = 121/169 (71%)

Query:   113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXX 172
             D+PA +R +LL NP E++LL++ NP LADALL+G  E F R+                  
Sbjct:   133 DNPALLRDMLLANPHELSLLKERNPPLADALLSGDLERFSRVLVEQQQDRARREQERIRL 192

Query:   173 XNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFID 232
              +A PFD EAQ  I E+I++ NIE NM  AME  PE+FG VVMLYINCKVNG+PVKAF+D
Sbjct:   193 FSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVD 252

Query:   233 SGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEL 281
             SGAQ TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A  ++
Sbjct:   253 SGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQI 301

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q5TDH0 DDI2 "Protein DDI1 homolog 2" [Homo sapiens (taxid:9606)]

 Score = 497 (180.0 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
 Identities = 98/169 (57%), Positives = 121/169 (71%)

Query:   113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXX 172
             D+PA +R +LL NP E++LL++ NP LA+ALL+G  E F R+                  
Sbjct:   133 DNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLEKFSRVLVEQQQDRARREQERIRL 192

Query:   173 XNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFID 232
              +A PFD EAQ  I E+I++ NIE NM  AME  PE+FG VVMLYINCKVNG+PVKAF+D
Sbjct:   193 FSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVD 252

Query:   233 SGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEL 281
             SGAQ TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A  ++
Sbjct:   253 SGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQI 301

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-031030-15 ddi2 "DNA-damage inducible protein 2" [Danio rerio (taxid:7955)]

 Score = 492 (178.3 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 97/169 (57%), Positives = 121/169 (71%)

Query:   113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXX 172
             D+PA +R +LL NP E++LL++ NP LA+ALL+G  E F ++                  
Sbjct:   143 DNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLERFTKVLMEQQQDRARRDQERIKL 202

Query:   173 XNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFID 232
               A PFD +AQ  I EEI+++NIE NM  AME  PE+FG VVMLYINCKVNG+PVKAF+D
Sbjct:   203 LTADPFDLDAQAKIEEEIRQHNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVD 262

Query:   233 SGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEL 281
             SGAQ TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A  ++
Sbjct:   263 SGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQI 311

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1917244 Ddi2 "DNA-damage inducible protein 2" [Mus musculus (taxid:10090)]

 Score = 490 (177.5 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 96/169 (56%), Positives = 120/169 (71%)

Query:   113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXX 172
             D+PA +R +LL NP E++LL++ NP LA+ALL+G  E F R+                  
Sbjct:   133 DNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLEKFSRVLVEQQQDRARREQERIRL 192

Query:   173 XNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFID 232
              +A PFD EAQ  I E+I++ NIE NM  AME  PE+FG V MLYINC+VNG+PVKAF+D
Sbjct:   193 FSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVAMLYINCRVNGHPVKAFVD 252

Query:   233 SGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEL 281
             SGAQ TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A  ++
Sbjct:   253 SGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQI 301

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1MAK5 Ddi2 "Protein Ddi2" [Rattus norvegicus (taxid:10116)]

 Score = 489 (177.2 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 96/169 (56%), Positives = 119/169 (70%)

Query:   113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXX 172
             D PA +R +LL NP E++LL++ NP LA+ALL+G  E F R+                  
Sbjct:   133 DSPALLRDMLLANPHELSLLKERNPPLAEALLSGDLEKFSRVLVEQQQDRARREQERIRL 192

Query:   173 XNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFID 232
              +A PFD EAQ  I E+I++ NIE NM  AME  PE+FG V MLYINC+VNG+PVKAF+D
Sbjct:   193 FSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVAMLYINCRVNGHPVKAFVD 252

Query:   233 SGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEL 281
             SGAQ TIMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A  ++
Sbjct:   253 SGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQI 301

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1SV49 DDI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 483 (175.1 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 93/165 (56%), Positives = 118/165 (71%)

Query:   113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXX 172
             D PA +R +LL NP +++LL++ NP LA+ALL+G+ E F ++                  
Sbjct:   140 DSPALIRSMLLSNPHDLSLLKERNPALAEALLSGNLETFSQVLMEQQRERVLREQERFRL 199

Query:   173 XNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFID 232
              +A PFD EAQ  I EEI++ NIE NM  AME  PE+FG V MLYINCKVNG+P+KAF+D
Sbjct:   200 YSADPFDLEAQAKIEEEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVD 259

Query:   233 SGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMA 277
             SGAQ TIMS ACAER NI+RL+D RWAGIAKGVG Q+I+GR+H+A
Sbjct:   260 SGAQMTIMSQACAERCNIIRLVDRRWAGIAKGVGTQRIIGRVHLA 304

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|E1C2C2 DDI2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 131/283 (46%), Positives = 174/283 (61%)

Query:    14 FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73
             F L V  D EL+NF+A CE++SG PA E  I +    L DN ++L ++G++DGD+V+L+ 
Sbjct:    17 FSLQVDADFELQNFRALCELESGIPAAESQIVYAERPLTDNNRSLASYGLKDGDVVILRQ 76

Query:    74 LGSYHATPAA---VIPNFDFSGIVVPXXXXXXXXXXXX------------XXXXDDPATV 118
               +    P+     +P  DFS I VP                            ++PA +
Sbjct:    77 KDTVEPRPSIRFPALPRIDFSSIAVPGTSAQQRQSPAQRLRPSPPDAPSFSQGLENPALL 136

Query:   119 RQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERIXXXXXXXXXXXXXXXXXXXNAHPF 178
             R++LL NP E++LL++ NP LA+ALL+G  + F R+                   +A PF
Sbjct:   137 REMLLANPHELSLLKERNPPLAEALLSGDLDKFTRVLLEQQQDRARREQERIRLYSADPF 196

Query:   179 DTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTT 238
             D EAQ  I E+I++ NIE NM  AME  PE+FG VVMLYINCKVNG+PVKAF+DSGAQ T
Sbjct:   197 DLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVDSGAQMT 256

Query:   239 IMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEL 281
             IMS ACAER NIMRL+D RWAGIAKGVG QKI+GR+H+A  ++
Sbjct:   257 IMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQI 299

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6TH22	DDI2_DANRE	No assigned EC number	0.5034	0.8708	0.6399	yes	N/A
Q5TDH0	DDI2_HUMAN	No assigned EC number	0.5266	0.8741	0.6616	yes	N/A
Q6CFI3	DDI1_YARLI	No assigned EC number	0.3392	0.8774	0.6675	yes	N/A
Q4WGS4	DDI1_ASPFU	No assigned EC number	0.3899	0.8145	0.6074	yes	N/A
A2ADY9	DDI2_MOUSE	No assigned EC number	0.5160	0.8741	0.6616	yes	N/A
Q2USD7	DDI1_ASPOR	No assigned EC number	0.4015	0.8145	0.6119	yes	N/A
Q497D6	DDI2_XENTR	No assigned EC number	0.5326	0.8741	0.6700	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	302
pfam09668	124	pfam09668, Asp_protease, Aspartyl protease	3e-55
cd05479	124	cd05479, RP_DDI, RP_DDI; retropepsin-like domain o	4e-48
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	2e-20
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	3e-08
cd00303	92	cd00303, retropepsin_like, Retropepsins; pepsin-li	7e-07
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	6e-06
pfam13650	89	pfam13650, Asp_protease_2, Aspartyl protease	2e-04
smart00213	72	smart00213, UBQ, Ubiquitin homologues	8e-04

>gnl|CDD|118200 pfam09668, Asp_protease, Aspartyl protease

 Score =  175 bits (445), Expect = 3e-55
 Identities = 61/86 (70%), Positives = 72/86 (83%)

Query: 192 KNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIM 251
           + N++ N+E AME+ PE FG V MLYINC+VNG PVKAF+DSGAQT+IMS  CAER  IM
Sbjct: 1   QENVDENLEHAMEHTPEAFGRVTMLYINCEVNGVPVKAFVDSGAQTSIMSPRCAERCGIM 60

Query: 252 RLLDTRWAGIAKGVGVQKILGRIHMA 277
           RLLDTR+AGIA+GVG  KILGR+HMA
Sbjct: 61  RLLDTRFAGIARGVGTAKILGRVHMA 86

This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover. Length = 124

>gnl|CDD|133146 cd05479, RP_DDI, RP_DDI; retropepsin-like domain of DNA damage inducible protein

 Score =  156 bits (397), Expect = 4e-48
 Identities = 54/78 (69%), Positives = 66/78 (84%)

Query: 200 EAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWA 259
           + AME++PE+FG V MLYIN ++NG PVKAF+DSGAQ TIMS ACAE+  +MRL+D R+ 
Sbjct: 1   QNAMEHHPESFGKVPMLYINVEINGVPVKAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQ 60

Query: 260 GIAKGVGVQKILGRIHMA 277
           GIAKGVG QKILGRIH+A
Sbjct: 61  GIAKGVGTQKILGRIHLA 78

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI. Length = 124

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 82.8 bits (205), Expect = 2e-20
 Identities = 35/70 (50%), Positives = 47/70 (67%)

Query: 3  VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHG 62
          +TV T  +   F LDV  DLELENFKA CE +SG PA +  + + G  L DNK+ L  +G
Sbjct: 1  ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYG 60

Query: 63 IQDGDLVLLK 72
          ++DGDLV+L+
Sbjct: 61 VKDGDLVVLR 70

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 4  TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGI 63
          TV T       L +VS D  +   KA    + G P  +  + + G +L+D+ KTL  +GI
Sbjct: 1  TVKTLTGKTFEL-EVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDD-KTLSDYGI 58

Query: 64 QDGDLVLL 71
          QDG  + L
Sbjct: 59 QDGSTLHL 66

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|133136 cd00303, retropepsin_like, Retropepsins; pepsin-like aspartate proteases

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 218 INCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTR 257
           +  K+NG PV+A +DSGA    +S + A+++ +   L   
Sbjct: 1   LKGKINGVPVRALVDSGASVNFISESLAKKLGLPPRLLPT 40

The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A. Length = 92

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLV 69
            +   L+V     +   K   E + G P  +  + F G +L+D+  TL  +GIQDG  +
Sbjct: 4  DGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDD-TTLSEYGIQDGSTL 62

Query: 70 LL 71
           L
Sbjct: 63 HL 64

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|222288 pfam13650, Asp_protease_2, Aspartyl protease

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 218 INCKVNGYPVKAFIDSGAQTTIMSLACAERVNI 250
           +   +NG PV+  +D+GA  T++S + AER+ +
Sbjct: 1   VPVTINGKPVRFLLDTGASGTLLSRSLAERLGL 33

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Length = 89

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          +++TV T        L+V     +   K      +G P  +  + ++G +L+D++ TL  
Sbjct: 1  IELTVKTLDGKT-ITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDR-TLAD 58

Query: 61 HGIQDGDLVLL 71
          +GIQDG  + L
Sbjct: 59 YGIQDGSTIHL 69

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG0012|consensus	380		100.0
PF09668	124	Asp_protease: Aspartyl protease; InterPro: IPR0191	100.0
cd05480	103	NRIP_C NRIP_C; putative nuclear receptor interacti	99.97
KOG0010|consensus	493		99.91
cd05479	124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	99.81
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.79
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.75
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.74
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.73
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.73
PTZ00044	76	ubiquitin; Provisional	99.72
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.72
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.7
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.7
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.7
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.7
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.69
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.69
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.69
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.67
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.65
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.65
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.64
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.64
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.61
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.6
KOG0011|consensus	340		99.6
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.59
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.59
KOG0003|consensus	128		99.52
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.52
KOG0005|consensus	70		99.51
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.5
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.42
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.42
KOG0004|consensus	156		99.4
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.29
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.29
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.2
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.18
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.11
TIGR02281	121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	99.01
cd05483	96	retropepsin_like_bacteria Bacterial aspartate prot	98.93
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.93
cd05484	91	retropepsin_like_LTR_2 Retropepsins_like_LTR, peps	98.85
PF13650	90	Asp_protease_2: Aspartyl protease	98.84
PF13975	72	gag-asp_proteas: gag-polyprotein putative aspartyl	98.84
PLN02560	308	enoyl-CoA reductase	98.82
KOG4248|consensus	1143		98.81
KOG0001|consensus	75		98.75
cd06095	86	RP_RTVL_H_like Retropepsin of the RTVL_H family of	98.65
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.6
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.59
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.5
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.49
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.47
COG3577	215	Predicted aspartyl protease [General function pred	98.25
PF00077	100	RVP: Retroviral aspartyl protease The Prosite entr	98.18
KOG1872|consensus	473		98.14
PF08284	135	RVP_2: Retroviral aspartyl protease; InterPro: IPR	97.98
cd05481	93	retropepsin_like_LTR_1 Retropepsins_like_LTR; peps	97.9
TIGR03698	107	clan_AA_DTGF clan AA aspartic protease, AF_0612 fa	97.85
KOG0006|consensus	446		97.81
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.63
cd00303	92	retropepsin_like Retropepsins; pepsin-like asparta	97.62
KOG4495|consensus	110		97.45
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.36
KOG3493|consensus	73		97.25
COG5417	81	Uncharacterized small protein [Function unknown]	96.96
KOG1769|consensus	99		96.94
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.92
PF09280	59	XPC-binding: XPC-binding domain; InterPro: IPR0153	96.86
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.66
KOG1639|consensus	297		96.62
KOG3206|consensus	234		96.62
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.56
cd05482	87	HIV_retropepsin_like Retropepsins, pepsin-like asp	96.52
PF12384	177	Peptidase_A2B: Ty3 transposon peptidase; InterPro:	96.46
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	96.44
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	96.44
PF05585	164	DUF1758: Putative peptidase (DUF1758); InterPro: I	96.29
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	96.07
PF14453	57	ThiS-like: ThiS-like ubiquitin	95.89
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	95.84
PF13019	162	Telomere_Sde2: Telomere stability and silencing	95.68
PRK06437	67	hypothetical protein; Provisional	95.08
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	95.05
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	94.65
PRK08364	70	sulfur carrier protein ThiS; Provisional	94.38
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	94.36
KOG0013|consensus	231		94.28
PRK06488	65	sulfur carrier protein ThiS; Validated	94.09
PRK05863	65	sulfur carrier protein ThiS; Provisional	94.02
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	93.87
COG5550	125	Predicted aspartyl protease [Posttranslational mod	93.44
PRK05659	66	sulfur carrier protein ThiS; Validated	92.98
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	92.48
PRK08053	66	sulfur carrier protein ThiS; Provisional	92.06
PRK07696	67	sulfur carrier protein ThiS; Provisional	91.89
PRK07440	70	hypothetical protein; Provisional	91.74
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	91.28
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	90.89
PRK06944	65	sulfur carrier protein ThiS; Provisional	90.74
PRK06083	84	sulfur carrier protein ThiS; Provisional	90.66
TIGR02958	452	sec_mycoba_snm4 secretion protein snm4. Members of	90.26
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	90.0
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	89.93
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	89.91
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	89.51
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	89.1
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	88.07
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	87.31
KOG4583|consensus	391		87.17
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	86.61
cd06094	89	RP_Saci_like RP_Saci_like, retropepsin family. Ret	85.87
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	85.86
smart00727	41	STI1 Heat shock chaperonin-binding motif.	85.21
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	84.92
PRK01777	95	hypothetical protein; Validated	84.89
KOG4250|consensus	732		82.94
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	82.9
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	82.84
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	82.54
KOG2982|consensus	418		81.88
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	80.92
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	80.61
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	80.29

>KOG0012|consensus

Probab=100.00  E-value=7.5e-67  Score=490.01  Aligned_cols=287  Identities=42%  Similarity=0.618  Sum_probs=251.4

Q ss_pred             CEEEEEeCC-CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCC-cccccccCCCCCCEEEEEEecCCC
Q psy15482          1 MKVTVSTQH-TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDN-KKTLKTHGIQDGDLVLLKHLGSYH   78 (302)
Q Consensus         1 MqItV~~~~-~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~-~~TL~~~gI~dgd~l~L~~~~~~~   78 (302)
                      |.+||.+.. ....++++|+.+..+.+|+++++.++|++.+..-|+||++++.++ +.+|.++|+++||+|.+..+...+
T Consensus         1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~   80 (380)
T KOG0012|consen    1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP   80 (380)
T ss_pred             CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence            889998832 567789999999999999999999999999999999999999765 678999999999999998776543


Q ss_pred             --CCCCCCCCCCCCCCcccCCCCCCC---CCC------------CCCCCC-CCCHHHHHHHHhcCHHHHHHHHhcChhHH
Q psy15482         79 --ATPAAVIPNFDFSGIVVPSASSSS---SNG------------QSSNSL-SDDPATVRQLLLDNPKEIALLQQNNPRLA  140 (302)
Q Consensus        79 --~~~~~~~p~~d~s~~~~p~~s~s~---~~s------------~~~~~~-~~npe~iR~~~l~NP~~~~~L~~~NPeLa  140 (302)
                        .-+.+..+..||+++.+|..+...   .++            +...+. .++|+.+|++++++|..+..+++.+|.|+
T Consensus        81 r~~v~~~~~~~~dFat~A~~~fs~q~a~~~~gaq~~rg~~~~di~~a~~~~ldsp~~~Rq~~la~pf~L~~~r~~lp~La  160 (380)
T KOG0012|consen   81 RPIVPIQVRLISDFATIAVPMFSSQRARQLQGAQRTRGRLQTDIPEASSLSLDSPATFRQALLAMPFFLHLDRAYLPPLA  160 (380)
T ss_pred             CccccccceehhcccccccccccchhccccccccccccccccccccccccCcCCHHHHHHHHhcCchhhhhchhhcCccc
Confidence              111233344567666665432111   000            011223 59999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhHHHHHHHHHHhCCCCcceeeEEEEEE
Q psy15482        141 DALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAMEYNPETFGTVVMLYINC  220 (302)
Q Consensus       141 ~al~~~d~e~f~~~lr~~~~~~~~~e~~~~~~l~~DP~d~e~Q~~i~e~i~q~~i~~n~~~A~E~~PE~f~~v~mlyi~~  220 (302)
                      .++..+|.+.|.+.+++++..+..++..+.+++++||||+|+|+||+|.|+|++|+|||.+|+||+||.|+.|.||||||
T Consensus       161 ~~l~~g~~~k~~~~~~~~q~d~~rr~~~~~rl~eanPfd~E~q~rIee~irq~~i~eq~~~ai~~~pe~f~~v~ML~iN~  240 (380)
T KOG0012|consen  161 ALLVLGDLEKFDRTLKEMQKDYQRRSVHQRRLLEANPFDLEAQRRIEEKIRQNAIDEQMSHAIEYHPEDFTQVTMLYINC  240 (380)
T ss_pred             hhhcccchhhhhhhhhhhccccchhhhhhHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHhhhcCccccccceEEEEEE
Confidence            99999999999999998777777778888899999999999999999999999999999999999999999999999999


Q ss_pred             EEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecccccc
Q psy15482        221 KVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGD  287 (302)
Q Consensus       221 ~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~~~  287 (302)
                      +|||+|||||||||||+||||.+|||||||.+|||+||.|+|+|||+.||+|+||+++++||+.|++
T Consensus       241 ~ing~~VKAfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg~~ki~g~Ih~~~lki~~~~l~  307 (380)
T KOG0012|consen  241 EINGVPVKAFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVGTEKILGRIHQAQLKIEDLYLP  307 (380)
T ss_pred             EECCEEEEEEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCCcccccceeEEEEEEeccEeec
Confidence            9999999999999999999999999999999999999999999999999999999999999999986

>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=7.9e-41  Score=277.35  Aligned_cols=96  Identities=60%  Similarity=0.990  Sum_probs=59.7

Q ss_pred             HhhHHHHHHHHHHhCCCCcceeeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceee
Q psy15482        192 KNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKIL  271 (302)
Q Consensus       192 q~~i~~n~~~A~E~~PE~f~~v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~  271 (302)
                      |+||+|||++||||+||.|++|.||||+|+|||++||||||||||+||||.+||+||||++++|+||+|+++|||+++++
T Consensus         1 q~~i~~~~~~a~e~~PE~f~~v~mLyI~~~ing~~vkA~VDtGAQ~tims~~~a~r~gL~~lid~r~~g~a~GvG~~~i~   80 (124)
T PF09668_consen    1 QENIDENLENAMEHSPESFGQVSMLYINCKINGVPVKAFVDTGAQSTIMSKSCAERCGLMRLIDKRFAGVAKGVGTQKIL   80 (124)
T ss_dssp             -------------------------EEEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEEGGG-EE-------EEE
T ss_pred             ChhHHHHHHHHHHhCcHhhcCcceEEEEEEECCEEEEEEEeCCCCccccCHHHHHHcCChhhccccccccccCCCcCcee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeeeecccccc
Q psy15482        272 GRIHMAIAELTNFNGD  287 (302)
Q Consensus       272 G~i~~~~~~ig~~~~~  287 (302)
                      ||||.++++||+.++.
T Consensus        81 G~Ih~~~l~ig~~~~~   96 (124)
T PF09668_consen   81 GRIHSVQLKIGGLFFP   96 (124)
T ss_dssp             EEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEEECCEEEE
Confidence            9999999999998864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.

>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein

Probab=99.97  E-value=1.6e-31  Score=211.57  Aligned_cols=70  Identities=21%  Similarity=0.466  Sum_probs=67.1

Q ss_pred             EEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhc-cccceecccCc-ceeeeEEEEeeeeecccccc
Q psy15482        218 INCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDT-RWAGIAKGVGV-QKILGRIHMAIAELTNFNGD  287 (302)
Q Consensus       218 i~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~-~~~~~a~gvg~-~~i~G~i~~~~~~ig~~~~~  287 (302)
                      |||+|||+|||||||||||+||||++|||||||+|++|+ ||+|+|+|||+ .||+||||.++|+||+.+++
T Consensus         1 vnCk~nG~~vkAfVDsGaQ~timS~~caercgL~r~v~~~r~~g~A~gvgt~~kiiGrih~~~ikig~~~~~   72 (103)
T cd05480           1 VSCQCAGKELRALVDTGCQYNLISAACLDRLGLKERVLKAKAEEEAPSLPTSVKVIGQIERLVLQLGQLTVE   72 (103)
T ss_pred             CceeECCEEEEEEEecCCchhhcCHHHHHHcChHhhhhhccccccccCCCcceeEeeEEEEEEEEeCCEEee
Confidence            689999999999999999999999999999999999987 99999999998 69999999999999998874

Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>KOG0010|consensus

Probab=99.91  E-value=2.9e-24  Score=209.98  Aligned_cols=190  Identities=27%  Similarity=0.409  Sum_probs=140.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCCCCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSYHAT   80 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~~~~   80 (302)
                      ++|+||+ .++ ++.+.|..+.||.+||++|...+++|+++++|||.||+|+|+ +||..|||+||.||||+++....++
T Consensus        16 irV~Vkt-~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~-dTL~~~gI~Dg~TvHLVik~~~~~~   92 (493)
T KOG0010|consen   16 IRVTVKT-PKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDD-DTLKQYGIQDGHTVHLVIKSQPRPT   92 (493)
T ss_pred             eEEEEec-CCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccCh-hhHHHcCCCCCcEEEEEeccCCCCC
Confidence            3688888 555 999999999999999999999999999999999999999997 9999999999999999998775432


Q ss_pred             C----C----CCCCC----------CCCCCcccCCCCCC--CC---------C-------------------CCCCCCCC
Q psy15482         81 P----A----AVIPN----------FDFSGIVVPSASSS--SS---------N-------------------GQSSNSLS  112 (302)
Q Consensus        81 ~----~----~~~p~----------~d~s~~~~p~~s~s--~~---------~-------------------s~~~~~~~  112 (302)
                      +    +    .+.|+          ..|+-...-+..+.  ..         .                   .|..++++
T Consensus        93 ~~~t~ap~~t~~~P~~~st~~~a~~~p~~l~~~~~~~g~~~~~~~~~~F~~l~~~~q~~~~snpe~~~~~m~nP~vq~ll  172 (493)
T KOG0010|consen   93 GTATSAPSSTASTPNNISTGRSASSNPFSLLTVGGFAGLSSLGLFAAMFGELQSQMQNQLLSNPEALRQMMENPIVQSLL  172 (493)
T ss_pred             CccccccccccCCCCCCCCcccccCCcccccccccccccccCCcchhhcccccccchhccccCHHHHHHhhhChHHHHHh
Confidence            2    1    11110          11110000000000  00         0                   02235689


Q ss_pred             CCHHHHHHHHhcCHHHHHHHHhcChhHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy15482        113 DDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKK  192 (302)
Q Consensus       113 ~npe~iR~~~l~NP~~~~~L~~~NPeLa~al~~~d~e~f~~~lr~~~~~~~~~e~~~~~~l~~DP~d~e~Q~~i~e~i~q  192 (302)
                      +||+++|+++.+||+|++.| ++|||+.+.+  +||+.+||.+    +-.++++..+..|.+.|-               
T Consensus       173 ~Npd~mrq~I~anPqmq~lm-~~npei~h~l--n~p~i~rQtl----e~arNP~m~qemmrn~d~---------------  230 (493)
T KOG0010|consen  173 NNPDLMRQLIMANPQMQDLM-QRNPEIGHLL--NNPLILRQTL----ESARNPEMMQEMMRNQDR---------------  230 (493)
T ss_pred             cChHHHHHHHhcCHHHHHHH-hhCCcchhhh--cChHHHHHHH----HhccCHHHHHHHHhhccc---------------
Confidence            99999999999999999888 9999999988  8999999988    334455544444444441               


Q ss_pred             hhHHHHHHHHHHhCCCCcceeeEEEEEEE
Q psy15482        193 NNIEANMEAAMEYNPETFGTVVMLYINCK  221 (302)
Q Consensus       193 ~~i~~n~~~A~E~~PE~f~~v~mlyi~~~  221 (302)
                            --+.+|-.|+.|.-..++|.++.
T Consensus       231 ------a~SnlesiPgG~n~l~~my~diq  253 (493)
T KOG0010|consen  231 ------AMSNLESIPGGYNALRRMYTDIQ  253 (493)
T ss_pred             ------cccChhcCccHHHHHHHHhhhcc
Confidence                  12667889999999999998864

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein

Probab=99.81  E-value=5.9e-20  Score=152.38  Aligned_cols=86  Identities=64%  Similarity=0.996  Sum_probs=82.6

Q ss_pred             HHHHhCCCCcceeeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeee
Q psy15482        201 AAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAE  280 (302)
Q Consensus       201 ~A~E~~PE~f~~v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~  280 (302)
                      +|+|++||.|..+.++|++|+|||++++|+|||||+.|+||++||+||||....+.++.+.+.|+|+.+..|+++.+.++
T Consensus         2 ~~~~~~~~~~~~~~~~~v~~~Ing~~~~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~~~~~~l~   81 (124)
T cd05479           2 NAMEHHPESFGKVPMLYINVEINGVPVKAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGVGTQKILGRIHLAQVK   81 (124)
T ss_pred             chhhcCcchhceeeEEEEEEEECCEEEEEEEeCCCceEEeCHHHHHHcCCccccCcceEEEEecCCCcEEEeEEEEEEEE
Confidence            58999999999999999999999999999999999999999999999999988888899999999999999999999999


Q ss_pred             eccccc
Q psy15482        281 LTNFNG  286 (302)
Q Consensus       281 ig~~~~  286 (302)
                      ||++..
T Consensus        82 i~~~~~   87 (124)
T cd05479          82 IGNLFL   87 (124)
T ss_pred             ECCEEe
Confidence            999875

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.79  E-value=4.2e-19  Score=134.35  Aligned_cols=73  Identities=23%  Similarity=0.228  Sum_probs=70.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|++++++|++++||++||+.|+.++|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.++
T Consensus         1 m~i~vk~-~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~-~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKL-LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADD-KRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCC-CCHHHCCCCCCCEEEEEEcC
Confidence            8999999 9999999999999999999999999999999999999999999997 99999999999999998774

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.75  E-value=4.2e-18  Score=128.94  Aligned_cols=71  Identities=20%  Similarity=0.254  Sum_probs=67.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+||+   +++++++|++++||++||++|+.++|+|+++|+|+|+|++|.|+ +||++|||+++++|||+.+.
T Consensus         1 mqi~vk~---~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~-~tL~~~~i~~~~tl~l~~~l   71 (74)
T cd01793           1 MQLFVRA---QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDD-ATLGQCGVEELCTLEVAGRL   71 (74)
T ss_pred             CEEEEEC---CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCC-CCHHHcCCCCCCEEEEEEec
Confidence            8999998   36899999999999999999999999999999999999999997 99999999999999998765

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.74  E-value=6.9e-18  Score=129.57  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=69.7

Q ss_pred             CEEEEEeCCCCeE-EEEE-eCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNEC-FLLD-VSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~-~~le-V~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+. ++++ ++++.||++||++|++.+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+.+..
T Consensus         1 M~I~vk~-~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~-~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRT-MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDG-HTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEc-CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCC-CCHHHcCCCCCCEEEEEEecC
Confidence            9999999 88886 7895 8999999999999999999999999999999999996 999999999999999998764

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.73  E-value=1.9e-17  Score=125.57  Aligned_cols=74  Identities=26%  Similarity=0.428  Sum_probs=70.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCC--CCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGY--PAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gI--p~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+  |+++|+|+|+|++|.|+ .+|++|||++|++|++..+.+
T Consensus         1 m~i~vk~-~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~-~~L~~~~i~~~~~i~~~~~~~   76 (77)
T cd01805           1 MKITFKT-LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDD-TTLEEYKIDEKDFVVVMVSKP   76 (77)
T ss_pred             CEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCC-CCHHHcCCCCCCEEEEEEecC
Confidence            9999999 99999999999999999999999999999  99999999999999986 899999999999999987753

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.73  E-value=7.9e-17  Score=156.54  Aligned_cols=73  Identities=26%  Similarity=0.461  Sum_probs=69.3

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhC---CCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSG---YPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~g---Ip~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+||||+ .+|++|+|+|++++||.+||.+|+.+.|   +|+++|+|+|+||+|+|+ +||++|||++|++|+++.++
T Consensus         1 MkItVKt-l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd-~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKT-LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDD-KTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEe-CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCC-CcHHHcCCCCCCEEEEEecc
Confidence            9999999 9999999999999999999999999998   999999999999999997 89999999999998877554

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PTZ00044 ubiquitin; Provisional

Probab=99.72  E-value=2.1e-17  Score=125.08  Aligned_cols=73  Identities=15%  Similarity=0.219  Sum_probs=70.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|++++++|++++||++||++|+..+|+|+++|+|+|+|++|.|+ .+|++|||++|++|+|..+.
T Consensus         1 m~i~vk~-~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~   73 (76)
T PTZ00044          1 MQILIKT-LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDD-LKLSDYKVVPGSTIHMVLQL   73 (76)
T ss_pred             CEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCC-CcHHHcCCCCCCEEEEEEEc
Confidence            8999999 9999999999999999999999999999999999999999999986 89999999999999998764

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.72  E-value=1.8e-17  Score=125.85  Aligned_cols=71  Identities=17%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|++ ..|+.+.++|+|+.||++||+.|+...|+|+++|+|+|.|++|.|+ +||++|||++|++|||-.
T Consensus         2 ~~i~vkt-~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~-~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           2 IEVVCND-RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDH-ISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             EEEEEEC-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCC-CCHHHcCCCCCCEEEEEe
Confidence            7899999 8999999999999999999999999999999999999999999996 899999999999999853

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.70  E-value=3.6e-17  Score=123.20  Aligned_cols=69  Identities=51%  Similarity=0.806  Sum_probs=65.2

Q ss_pred             EEEEeCC-CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          3 VTVSTQH-TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         3 ItV~~~~-~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      |||++ . +|++++++|++++||++||++|+.++|+|+++|+|+|+|++|.|++.+|++|||++|++|+|.
T Consensus         1 l~v~~-~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYT-ARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEE-CCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            68999 6 899999999999999999999999999999999999999999886578999999999999985

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.70  E-value=4.3e-17  Score=121.98  Aligned_cols=70  Identities=20%  Similarity=0.387  Sum_probs=67.0

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|++ ..|++++++|++++||.+||++|+.++|+|+++|+|+|+|++|.|+ .||++|||++|++|||+.|
T Consensus         1 i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~-~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRT-NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNT-TTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEc-CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEeC
Confidence            58899 8999999999999999999999999999999999999999999996 9999999999999999864

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.70  E-value=5.1e-17  Score=131.17  Aligned_cols=73  Identities=25%  Similarity=0.276  Sum_probs=70.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|++++++|++++||.+||++|+...|||+++|+|+|+|++|+|+ .+|++|||++|++|+|+.+.
T Consensus        28 M~I~Vk~-l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~-~tL~dy~I~~~stL~l~~~l  100 (103)
T cd01802          28 MELFIET-LTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDE-YCLNDYNISEGCTLKLVLAM  100 (103)
T ss_pred             EEEEEEc-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEec
Confidence            8999999 9999999999999999999999999999999999999999999997 99999999999999998764

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.70  E-value=5.6e-17  Score=122.79  Aligned_cols=71  Identities=15%  Similarity=0.244  Sum_probs=68.1

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|++ ..|++++++|+++.||++||+.|+...|+|+++|+|+|+|++|.|+ +||++|||++|++|+|..+.
T Consensus         1 i~vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~-~tL~~~~i~~~~tl~l~~~l   71 (74)
T cd01810           1 ILVRN-DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDE-HPLGEYGLKPGCTVFMNLRL   71 (74)
T ss_pred             CEEEC-CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCC-CCHHHcCCCCCCEEEEEEEc
Confidence            68999 9999999999999999999999999999999999999999999997 99999999999999998764

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.69  E-value=1.1e-16  Score=120.64  Aligned_cols=73  Identities=22%  Similarity=0.315  Sum_probs=70.3

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.+.++|+++.||++||++|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+++.+.
T Consensus         1 m~i~v~~-~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~-~tl~~~~i~~g~~i~l~~~~   73 (76)
T cd01806           1 MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDD-KTAADYKLEGGSVLHLVLAL   73 (76)
T ss_pred             CEEEEEe-CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCC-CCHHHcCCCCCCEEEEEEEc
Confidence            8999999 9999999999999999999999999999999999999999999986 89999999999999998864

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.69  E-value=1.2e-16  Score=120.39  Aligned_cols=73  Identities=29%  Similarity=0.337  Sum_probs=70.4

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.+.++|++++||++||+.|+..+|+|++.|+|+|+|+.|.|+ ++|++|||++|++|+|+.+.
T Consensus         1 m~i~v~~-~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~   73 (76)
T cd01803           1 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL   73 (76)
T ss_pred             CEEEEEc-CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCC-CcHHHcCCCCCCEEEEEEEc
Confidence            8999999 8999999999999999999999999999999999999999999996 89999999999999998874

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.69  E-value=1.4e-16  Score=118.79  Aligned_cols=72  Identities=21%  Similarity=0.399  Sum_probs=69.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|++ .+|++++++|+++.||.+||+.|+..+|+|++.|+|+|+|++|.|+ .+|++|||++|++|+|+.+
T Consensus         1 i~i~vk~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKT-LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDD-ETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCc-CcHHHCCCCCCCEEEEEeC
Confidence            8999999 9999999999999999999999999999999999999999999996 8999999999999999764

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.67  E-value=1.8e-16  Score=121.48  Aligned_cols=72  Identities=22%  Similarity=0.291  Sum_probs=68.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ ..|+.++++|+++.||++||..|+.+.|+|+++|+|+|+|++|.|+  +|++|||++|++|+|+...
T Consensus         2 m~I~Vk~-~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~--~L~~~gi~~~~~i~l~~~~   73 (78)
T cd01804           2 MNLNIHS-TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG--KLQDLGLGDGSKLTLVPTV   73 (78)
T ss_pred             eEEEEEE-CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC--cHHHcCCCCCCEEEEEeec
Confidence            8999999 8899999999999999999999999999999999999999999884  8999999999999998764

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.65  E-value=2.8e-16  Score=118.29  Aligned_cols=68  Identities=24%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             EEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          4 TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         4 tV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      .|+. .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+ .+|++|||++|++|||..
T Consensus         2 ~vk~-~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~-~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRL-STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDK-TRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEc-CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCC-CCHHHcCCCCCCEEEEEe
Confidence            4677 8899999999999999999999999999999999999999999997 999999999999999864

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.65  E-value=3.5e-16  Score=120.32  Aligned_cols=73  Identities=22%  Similarity=0.308  Sum_probs=69.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEE--EECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAI--EFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~L--i~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|+++.||.+||..|+..+|+|+++|+|  +|+|++|.|+ +||++|||++|++|+|+.+.
T Consensus         3 ~~i~Vk~-~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~-~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKM-LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDG-VPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEe-CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCC-CCHHHcCCCCCCEEEEEEEc
Confidence            7899999 999999999999999999999999999999999999  8999999996 89999999999999998875

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.64  E-value=8.2e-16  Score=114.06  Aligned_cols=68  Identities=28%  Similarity=0.426  Sum_probs=64.0

Q ss_pred             EeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          6 STQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         6 ~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+ .+|+.|+++|+++.||.+||..|+.++|+|++.|+|+|+|+.|.|+ .||++|||++|++|+|+.++
T Consensus         1 k~-~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~-~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    1 KT-LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDD-KTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             EE-TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTT-SBTGGGTTSTTEEEEEEESS
T ss_pred             CC-CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCc-CcHHHcCCCCCCEEEEEEec
Confidence            45 7899999999999999999999999999999999999999999885 99999999999999998764

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.64  E-value=7.6e-16  Score=115.58  Aligned_cols=71  Identities=30%  Similarity=0.428  Sum_probs=66.4

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|++ .+|. ++++|+++.||.+||+.|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|||+.+
T Consensus         1 ~~i~vk~-~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~-~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKT-PKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDT-DTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEc-CCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCC-CcHHHcCCCCCCEEEEEEC
Confidence            6899999 7886 58999999999999999999999999999999999999996 8999999999999999753

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.61  E-value=2e-15  Score=112.45  Aligned_cols=70  Identities=24%  Similarity=0.397  Sum_probs=65.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      ++|+|++ . |+.++++|++++||++||+.|+..+|+|++.|+|+|+|+.|.|+ ++|++|||++|++|+++.
T Consensus         1 i~i~vk~-~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~-~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKH-G-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDA-ETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCcc-CcHHHcCCCCCCEEEEec
Confidence            5789998 4 99999999999999999999999999999999999999999986 899999999999999863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.60  E-value=1.8e-15  Score=116.46  Aligned_cols=71  Identities=11%  Similarity=0.110  Sum_probs=62.9

Q ss_pred             CEEEEEeCCCCeE--EEEEeCCCccHHHHHHHHHhhhC--CCCCCeEEEECCeecCCCcccccccC--CCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNEC--FLLDVSEDLELENFKAFCEVQSG--YPAHEIAIEFQGVLLQDNKKTLKTHG--IQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~--~~leV~~~~TV~dLK~~Ie~e~g--Ip~~~Q~Li~~Gk~L~D~~~TL~~~g--I~dgd~l~L~~   73 (302)
                      +.|+||+ ++++.  |++++++++||.+||+.|+...+  .|+++|+|||+||+|+|+ .||++|+  +.+|.+|||+-
T Consensus         2 i~l~IK~-~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~-~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKS-PNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDH-LKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEEC-CCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccch-hhHHHHhhcccCCceEEEEe
Confidence            4689999 88888  56666999999999999999874  558999999999999996 9999997  99999999974

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>KOG0011|consensus

Probab=99.60  E-value=1.3e-14  Score=136.47  Aligned_cols=74  Identities=23%  Similarity=0.420  Sum_probs=70.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhC--CCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSG--YPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~g--Ip~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+||||+ +.+..|+++|.|+.||.++|..|+...|  +|++.|+|||+||+|+|+ .|+++|+|++++.|++...+.
T Consensus         1 m~lt~Kt-L~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~-~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKT-LKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDE-TTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeee-ccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCC-cchhhhccccCceEEEEEecC
Confidence            8999999 9999999999999999999999999999  999999999999999997 999999999999988775554

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.59  E-value=4e-15  Score=113.29  Aligned_cols=66  Identities=14%  Similarity=0.322  Sum_probs=63.3

Q ss_pred             CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      .+|++++++|++++||++||+.|+..+|||++.|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~~~i~~g~~l~v~~~~   70 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDS-NSLAYYNLANGTIIHLQLKE   70 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCC-CcHHHcCCCCCCEEEEEEec
Confidence            5899999999999999999999999999999999999999999996 99999999999999998875

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.59  E-value=6.1e-15  Score=112.15  Aligned_cols=70  Identities=10%  Similarity=0.152  Sum_probs=65.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE---CCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF---QGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~---~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |.|+|+.  +|+.|+|+|+++.||++||+.|+..+|+|+++|+|+|   .|+.|.|+ .+|++|||++|+.|+|+.
T Consensus         1 ~~i~vk~--~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~-~~L~~~~i~~g~~i~lmG   73 (74)
T cd01813           1 VPVIVKW--GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDD-VKISALKLKPNTKIMMMG   73 (74)
T ss_pred             CEEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCC-cCHHHcCCCCCCEEEEEe
Confidence            5677776  8999999999999999999999999999999999997   99999986 999999999999999874

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>KOG0003|consensus

Probab=99.52  E-value=1.5e-15  Score=121.45  Aligned_cols=74  Identities=27%  Similarity=0.325  Sum_probs=70.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |++++++ ..|++++|+|+|+.||.+||++|..++|||+++|+|+|+|++|+|. .||++|||+..||||++.+..
T Consensus         1 ~~~~~~~-~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~-~Tla~Y~i~~~~Tl~~~~rL~   74 (128)
T KOG0003|consen    1 MQIFVKT-LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR   74 (128)
T ss_pred             CcEEEEE-eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccC-CcccccCccchhhhhhhHHHh
Confidence            7899999 9999999999999999999999999999999999999999999996 999999999999999988763

>smart00213 UBQ Ubiquitin homologues

Probab=99.52  E-value=3.6e-14  Score=102.63  Aligned_cols=64  Identities=27%  Similarity=0.433  Sum_probs=60.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGD   67 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd   67 (302)
                      |+|+|++ .+ ..+.++|++++||++||+.|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|+
T Consensus         1 ~~i~vk~-~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~-~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKT-LD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDD-RTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEE-CC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCC-CCHHHcCCcCCC
Confidence            8999999 66 6899999999999999999999999999999999999999986 999999999986

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG0005|consensus

Probab=99.51  E-value=1.5e-14  Score=104.28  Aligned_cols=70  Identities=23%  Similarity=0.352  Sum_probs=67.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      |.|.|++ ++|+.+.++++|+++|+.+|+.|+++.||||.+|+|+|.||++.|+ +|-++|++.-|++||++
T Consensus         1 m~iKvkt-Lt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD-~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDD-KTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEee-eccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccccc-ccHHHhhhccceeEeeC
Confidence            8899999 9999999999999999999999999999999999999999999997 99999999999999984

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.50  E-value=6.3e-14  Score=106.92  Aligned_cols=70  Identities=26%  Similarity=0.399  Sum_probs=61.5

Q ss_pred             EEEEEeC-CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCC-CCCEEEEE
Q psy15482          2 KVTVSTQ-HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQ-DGDLVLLK   72 (302)
Q Consensus         2 qItV~~~-~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~-dgd~l~L~   72 (302)
                      .+.|..+ ..|.+++++|++++||++||++|+..+|||+++|+| |+|+.|.|+.+||++|||+ +||+|+|-
T Consensus         2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799           2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence            3455544 468889999999999999999999999999999999 9999996555899999999 88999985

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.42  E-value=9e-13  Score=103.04  Aligned_cols=73  Identities=16%  Similarity=0.304  Sum_probs=68.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.+.+.|.+++++..||..++...|+|+++|+|+|+|+.|.++ .|+++|||++||+|+++.+.
T Consensus        12 i~I~v~~-~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~-~T~~~l~m~d~d~I~v~l~l   84 (87)
T cd01763          12 INLKVKG-QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDN-QTPDDLGMEDGDEIEVMLEQ   84 (87)
T ss_pred             EEEEEEC-CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCC-CCHHHcCCCCCCEEEEEEec
Confidence            5788888 7899999999999999999999999999999999999999999996 89999999999999998764

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.42  E-value=2.3e-13  Score=103.62  Aligned_cols=57  Identities=28%  Similarity=0.392  Sum_probs=50.8

Q ss_pred             EeCC-CccHHHHHHHHHhhh--CCC-CCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482         17 DVSE-DLELENFKAFCEVQS--GYP-AHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus        17 eV~~-~~TV~dLK~~Ie~e~--gIp-~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|+| ++||++||++|+.++  |++ +++|+|+|+||+|+|+ +||++|||++|++|||+++
T Consensus        15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~-~TL~dygI~~gstlhLv~~   75 (75)
T cd01815          15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDD-QTLDFYGIQSGSTIHILRK   75 (75)
T ss_pred             CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCC-CcHHHcCCCCCCEEEEEeC
Confidence            4554 789999999999995  575 9999999999999997 9999999999999999874

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>KOG0004|consensus

Probab=99.40  E-value=1.7e-13  Score=116.56  Aligned_cols=74  Identities=27%  Similarity=0.337  Sum_probs=70.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ +.+++++++|+++.||.++|+.|+..+|||+++|+|+|.|++|.|. .||+||+|+.-++|+|+.+..
T Consensus         1 m~ifVk~-l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedg-rtlSDY~Iqkestl~l~l~l~   74 (156)
T KOG0004|consen    1 MQIFVKT-LTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR   74 (156)
T ss_pred             Cccchhh-ccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccC-CccccccccccceEEEEEEec
Confidence            8999999 9999999999999999999999999999999999999999999997 999999999999999987643

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.29  E-value=9.9e-12  Score=90.94  Aligned_cols=67  Identities=36%  Similarity=0.507  Sum_probs=62.3

Q ss_pred             EEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          5 VSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         5 V~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+. .+|..+.+++++++||++||.+|+..+|+|++.|+|+|+|+.|.|+ .+|++||+++|+.|++..
T Consensus         2 v~~-~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~-~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKT-LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDD-KTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEc-cCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCc-CCHHHCCCCCCCEEEEEE
Confidence            566 6799999999999999999999999999999999999999999886 899999999999999864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.29  E-value=7.2e-12  Score=99.53  Aligned_cols=63  Identities=24%  Similarity=0.227  Sum_probs=59.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482         13 CFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus        13 ~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      ..+++|+++.||.+||.+|...+++|+.+|+|+|+|+.|.|+++||++|||..|++|+|..+.
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            347899999999999999999999999999999999999999999999999999999998764

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.20  E-value=5.6e-11  Score=88.88  Aligned_cols=70  Identities=21%  Similarity=0.340  Sum_probs=65.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCC-CCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA-HEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~-~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      |+|+|++ .+|+.+.+.|.+++++..|+.......|+|+ +..+|+|+|+.|.++ +|+++|||++||+|.+.
T Consensus         1 I~i~v~~-~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~-~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen    1 ITIKVRS-QDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPN-DTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEEEEEE-TTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TT-SCHHHHT-STTEEEEEE
T ss_pred             CEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCC-CCHHHCCCCCCCEEEEE
Confidence            6899999 8899999999999999999999999999999 999999999999886 89999999999999985

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.18  E-value=1.8e-10  Score=89.59  Aligned_cols=74  Identities=22%  Similarity=0.346  Sum_probs=61.0

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE-ECCe-----ecCCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE-FQGV-----LLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li-~~Gk-----~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      .|+|+...+....+..+++++||.+||++|+..+|+|++.|+|. |.|+     .|.|+.++|+.||+++|..||++-..
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~   82 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVS   82 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCC
Confidence            46677633333344459999999999999999999999999994 8988     67666699999999999999998654

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.11  E-value=1.1e-10  Score=95.02  Aligned_cols=73  Identities=11%  Similarity=0.008  Sum_probs=60.7

Q ss_pred             EEEEeCCCCeEE-EEEeCCCccHHHHHHHHHhhh-----CCC--CCCeEEEECCeecCCCcccccccC------CCCCCE
Q psy15482          3 VTVSTQHTNECF-LLDVSEDLELENFKAFCEVQS-----GYP--AHEIAIEFQGVLLQDNKKTLKTHG------IQDGDL   68 (302)
Q Consensus         3 ItV~~~~~g~~~-~leV~~~~TV~dLK~~Ie~e~-----gIp--~~~Q~Li~~Gk~L~D~~~TL~~~g------I~dgd~   68 (302)
                      |.++. .+|.-+ +..+++++||.+||+.|+++.     |+|  +++|+|||.||+|.|+ +||++|+      +....|
T Consensus         7 ~kfrl-~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~-~TL~d~~~p~g~~~~~~~T   84 (113)
T cd01814           7 IKFRL-YDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENS-KTVGECRSPVGDIAGGVIT   84 (113)
T ss_pred             EEEEc-cCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCC-CcHHHhCCcccccCCCceE
Confidence            45555 556444 788999999999999999555     455  9999999999999997 9999999      777899


Q ss_pred             EEEEEecCC
Q psy15482         69 VLLKHLGSY   77 (302)
Q Consensus        69 l~L~~~~~~   77 (302)
                      +||+.+.+.
T Consensus        85 mHvvlr~~~   93 (113)
T cd01814          85 MHVVVQPPL   93 (113)
T ss_pred             EEEEecCCC
Confidence            999988654

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family

Probab=99.01  E-value=1.1e-09  Score=90.68  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             eeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecccccchhH
Q psy15482        213 VVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGDKKK  290 (302)
Q Consensus       213 v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~~~~~~  290 (302)
                      --++|++++|||+++.++|||||++|++|+++|+++||..--. .+.....+++......+++...|+||++.+..-.
T Consensus         9 ~g~~~v~~~InG~~~~flVDTGAs~t~is~~~A~~Lgl~~~~~-~~~~~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~   85 (121)
T TIGR02281         9 DGHFYATGRVNGRNVRFLVDTGATSVALNEEDAQRLGLDLNRL-GYTVTVSTANGQIKAARVTLDRVAIGGIVVNDVD   85 (121)
T ss_pred             CCeEEEEEEECCEEEEEEEECCCCcEEcCHHHHHHcCCCcccC-CceEEEEeCCCcEEEEEEEeCEEEECCEEEeCcE
Confidence            3578999999999999999999999999999999999975321 2333445555444466778888999999876433

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family

Probab=98.93  E-value=3e-09  Score=82.09  Aligned_cols=71  Identities=21%  Similarity=0.299  Sum_probs=58.4

Q ss_pred             EEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecccccc
Q psy15482        215 MLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGD  287 (302)
Q Consensus       215 mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~~~  287 (302)
                      ++||+|+|||.+++++|||||..++++.++|++|++.  ..........+++.....++.+...++||++.+.
T Consensus         2 ~~~v~v~i~~~~~~~llDTGa~~s~i~~~~~~~l~~~--~~~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~~~   72 (96)
T cd05483           2 HFVVPVTINGQPVRFLLDTGASTTVISEELAERLGLP--LTLGGKVTVQTANGRVRAARVRLDSLQIGGITLR   72 (96)
T ss_pred             cEEEEEEECCEEEEEEEECCCCcEEcCHHHHHHcCCC--ccCCCcEEEEecCCCccceEEEcceEEECCcEEe
Confidence            6899999999999999999999999999999999982  2222344667777777777777889999998654

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.93  E-value=5.4e-09  Score=81.42  Aligned_cols=75  Identities=17%  Similarity=0.336  Sum_probs=59.3

Q ss_pred             EEEEEeCCC-CeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC----C---eecCCCcccccccCCCCCCEEEEEE
Q psy15482          2 KVTVSTQHT-NECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ----G---VLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         2 qItV~~~~~-g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~----G---k~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      +|+|+.... +......+++++||.+||.+|+..+|+|++.|+|.+.    |   ..+.|+.++|..||+++|+.||+.-
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D   82 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD   82 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence            578887432 3577899999999999999999999999999999875    2   2345566999999999999999987


Q ss_pred             ecC
Q psy15482         74 LGS   76 (302)
Q Consensus        74 ~~~   76 (302)
                      ..+
T Consensus        83 ~~p   85 (87)
T PF14560_consen   83 TNP   85 (87)
T ss_dssp             -T-
T ss_pred             CCC
Confidence            653

>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases

Probab=98.85  E-value=8.3e-09  Score=80.59  Aligned_cols=66  Identities=21%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             EEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccC--cceeeeEEEEeeeeecccc
Q psy15482        217 YINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVG--VQKILGRIHMAIAELTNFN  285 (302)
Q Consensus       217 yi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg--~~~i~G~i~~~~~~ig~~~  285 (302)
                      |+.++|||++++++|||||..|+||.+.+.+.|+..+.+.  .-..+|.+  ..++.|++ .+.+++|+..
T Consensus         2 ~~~~~Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~--~~~v~~a~G~~~~~~G~~-~~~v~~~~~~   69 (91)
T cd05484           2 TVTLLVNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPT--KKRLRTATGTKLSVLGQI-LVTVKYGGKT   69 (91)
T ss_pred             EEEEEECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccc--cEEEEecCCCEeeEeEEE-EEEEEECCEE
Confidence            8999999999999999999999999999999999875444  33555555  35679999 7999999863

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif

>PF13650 Asp_protease_2: Aspartyl protease

Probab=98.84  E-value=8.3e-09  Score=78.78  Aligned_cols=69  Identities=22%  Similarity=0.286  Sum_probs=53.5

Q ss_pred             EEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecccccc
Q psy15482        218 INCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNGD  287 (302)
Q Consensus       218 i~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~~~  287 (302)
                      |+++|||++++|+|||||..++|++++|+++|+...-.. ......|.|......+.....++||++.+.
T Consensus         1 V~v~vng~~~~~liDTGa~~~~i~~~~~~~l~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~i~ig~~~~~   69 (90)
T PF13650_consen    1 VPVKVNGKPVRFLIDTGASISVISRSLAKKLGLKPRPKS-VPISVSGAGGSVTVYRGRVDSITIGGITLK   69 (90)
T ss_pred             CEEEECCEEEEEEEcCCCCcEEECHHHHHHcCCCCcCCc-eeEEEEeCCCCEEEEEEEEEEEEECCEEEE
Confidence            689999999999999999999999999999999653322 123456777555555555558999997764

>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease

Probab=98.84  E-value=7.9e-09  Score=77.87  Aligned_cols=65  Identities=22%  Similarity=0.249  Sum_probs=50.9

Q ss_pred             eeeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhc-cccceecccCcceeeeEEEE
Q psy15482        212 TVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDT-RWAGIAKGVGVQKILGRIHM  276 (302)
Q Consensus       212 ~v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~-~~~~~a~gvg~~~i~G~i~~  276 (302)
                      .-..+|+.|.|||+.++|+|||||..++||.+.|+|+|+...... +..-....=...++.|.++.
T Consensus         5 ~~g~~~v~~~I~g~~~~alvDtGat~~fis~~~a~rLgl~~~~~~~~~~v~~a~g~~~~~~g~~~~   70 (72)
T PF13975_consen    5 DPGLMYVPVSIGGVQVKALVDTGATHNFISESLAKRLGLPLEKPPSPIRVKLANGSVIEIRGVAEN   70 (72)
T ss_pred             cCCEEEEEEEECCEEEEEEEeCCCcceecCHHHHHHhCCCcccCCCCEEEEECCCCccccceEEEe
Confidence            446789999999999999999999999999999999999986665 43333333234566777664

>PLN02560 enoyl-CoA reductase

Probab=98.82  E-value=1.1e-08  Score=97.43  Aligned_cols=72  Identities=28%  Similarity=0.418  Sum_probs=63.2

Q ss_pred             CEEEEEeCCCCeEE---EEEeCCCccHHHHHHHHHhhhCC-CCCCeEEEEC---C----eecCCCcccccccCCCCCCEE
Q psy15482          1 MKVTVSTQHTNECF---LLDVSEDLELENFKAFCEVQSGY-PAHEIAIEFQ---G----VLLQDNKKTLKTHGIQDGDLV   69 (302)
Q Consensus         1 MqItV~~~~~g~~~---~leV~~~~TV~dLK~~Ie~e~gI-p~~~Q~Li~~---G----k~L~D~~~TL~~~gI~dgd~l   69 (302)
                      |+|+|+. .+|+.+   +|||+++.||+|||..|+++.++ ++++|+|++.   |    +.|+|+ +||+++|+++|++|
T Consensus         1 M~I~Vk~-~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~-ktL~d~gv~~gstL   78 (308)
T PLN02560          1 MKVTVVS-RSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDS-KSLKDYGLGDGGTV   78 (308)
T ss_pred             CEEEEEc-CCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCC-CCHHhcCCCCCceE
Confidence            8999997 777776   89999999999999999999986 8999999983   4    377876 89999999999999


Q ss_pred             EEEEe
Q psy15482         70 LLKHL   74 (302)
Q Consensus        70 ~L~~~   74 (302)
                      ++.--
T Consensus        79 y~kDL   83 (308)
T PLN02560         79 VFKDL   83 (308)
T ss_pred             EEEeC
Confidence            88654

>KOG4248|consensus

Probab=98.81  E-value=6.2e-09  Score=109.80  Aligned_cols=73  Identities=21%  Similarity=0.349  Sum_probs=69.3

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      .|+||+ ++..+.++.|...+||.+||.+|..+.+|+.+.|||||.||+|.|+ +++.+||| ||-+|||+-|+++
T Consensus         4 ~v~vkt-ld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~-k~vq~~~v-dgk~~hlverppp   76 (1143)
T KOG4248|consen    4 NVLVKT-LDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDD-KKVQEYNV-DGKVIHLVERPPP   76 (1143)
T ss_pred             ceeeee-cccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccc-hhhhhccC-CCeEEEeeccCCC
Confidence            378899 9999999999999999999999999999999999999999999997 99999999 9999999998665

>KOG0001|consensus

Probab=98.75  E-value=8.1e-08  Score=69.56  Aligned_cols=71  Identities=28%  Similarity=0.318  Sum_probs=67.0

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +++.+ ..|+.+.+++.+..++..+|..|+...|+|..+|+|.+.|+.|.|+ .+|.+|+|..++++++..+.
T Consensus         2 ~~~~~-~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~-~~l~~~~i~~~~~~~l~~~~   72 (75)
T KOG0001|consen    2 IFVKT-LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDG-RTLADYNIQEGSTLHLVLSL   72 (75)
T ss_pred             EEEEe-cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCC-CcHHHhCCCCCCEEEEEEec
Confidence            57778 8999999999999999999999999999999999999999999997 99999999999999998764

>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements

Probab=98.65  E-value=4.8e-08  Score=75.82  Aligned_cols=64  Identities=16%  Similarity=0.284  Sum_probs=48.9

Q ss_pred             EEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcce--eeeEEEEeeeeecccccc
Q psy15482        218 INCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQK--ILGRIHMAIAELTNFNGD  287 (302)
Q Consensus       218 i~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~--i~G~i~~~~~~ig~~~~~  287 (302)
                      |.+.|||+++.++|||||+.|+++...|+++   .  ..+.....+|+|...  -+.+.-. .+++|+.++.
T Consensus         1 ~~v~InG~~~~fLvDTGA~~tii~~~~a~~~---~--~~~~~~~v~gagG~~~~~v~~~~~-~v~vg~~~~~   66 (86)
T cd06095           1 VTITVEGVPIVFLVDTGATHSVLKSDLGPKQ---E--LSTTSVLIRGVSGQSQQPVTTYRT-LVDLGGHTVS   66 (86)
T ss_pred             CEEEECCEEEEEEEECCCCeEEECHHHhhhc---c--CCCCcEEEEeCCCcccccEEEeee-EEEECCEEEE
Confidence            4689999999999999999999999999998   2  233567888999765  2222211 6888888665

This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.60  E-value=1.5e-07  Score=76.66  Aligned_cols=74  Identities=23%  Similarity=0.226  Sum_probs=63.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCC-------CCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGI-------QDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI-------~dgd~l~L~~   73 (302)
                      |-+|+...-...++-+++.++.||.+||.+|+.-...|+++|+|+..+.+|.|+ +||++||+       +...+|-|..
T Consensus         1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~-kTL~d~g~t~~~akaq~pA~vgLa~   79 (119)
T cd01788           1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDG-KTLGDCGFTSQTARPQAPATVGLAF   79 (119)
T ss_pred             CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeeccc-ccHHHcCccccccccCCCCeEEEEE
Confidence            556666534566678999999999999999999999999999999888888885 99999999       7788888888


Q ss_pred             ec
Q psy15482         74 LG   75 (302)
Q Consensus        74 ~~   75 (302)
                      +.
T Consensus        80 r~   81 (119)
T cd01788          80 RS   81 (119)
T ss_pred             ec
Confidence            75

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.59  E-value=1.4e-07  Score=71.87  Aligned_cols=56  Identities=23%  Similarity=0.374  Sum_probs=49.0

Q ss_pred             EEe-CCCccHHHHHHHHHhhhC-CCCCCeEEE--ECCeecCCCcccccccCCCCCCEEEEE
Q psy15482         16 LDV-SEDLELENFKAFCEVQSG-YPAHEIAIE--FQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus        16 leV-~~~~TV~dLK~~Ie~e~g-Ip~~~Q~Li--~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      +++ +++.||++||..|+...+ ++++.|+|.  +.|+.|.|+ +||++|||++|++|++.
T Consensus        16 ~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~-~tL~~~gv~~g~~lyvK   75 (77)
T cd01801          16 LKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDD-DTLVDLGVGAGATLYVR   75 (77)
T ss_pred             cccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCc-ccHhhcCCCCCCEEEEe
Confidence            444 488999999999999976 589999995  899999986 89999999999999874

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.50  E-value=9.7e-07  Score=72.31  Aligned_cols=73  Identities=14%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             EEEEeCCCCe-EEEEEeCCCccHHHHHHHHHhhh-------CCCCCCeEEEECCeecCCCcccccccCCCCCC------E
Q psy15482          3 VTVSTQHTNE-CFLLDVSEDLELENFKAFCEVQS-------GYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGD------L   68 (302)
Q Consensus         3 ItV~~~~~g~-~~~leV~~~~TV~dLK~~Ie~e~-------gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd------~   68 (302)
                      |.++. .+|. +.++..++++||.+||+.|-.+.       -..++..||||.||.|.|+ +||+++++.-|+      +
T Consensus         5 lkf~l-~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~-~tL~~~~~~~~~~~~~~~v   82 (111)
T PF13881_consen    5 LKFRL-ADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDN-KTLSDCRLPSGETPGGPTV   82 (111)
T ss_dssp             EEEEE-TTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SS-SBTGGGT--TTSETT--EE
T ss_pred             EEEEE-eCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCc-CcHHHhCCCCCCCCCCCEE
Confidence            45555 5777 78999999999999999999754       1245788999999999986 999999999888      5


Q ss_pred             EEEEEecCC
Q psy15482         69 VLLKHLGSY   77 (302)
Q Consensus        69 l~L~~~~~~   77 (302)
                      +||+.+.+.
T Consensus        83 mHlvvrp~~   91 (111)
T PF13881_consen   83 MHLVVRPNA   91 (111)
T ss_dssp             EEEEE-SSS
T ss_pred             EEEEecCCC
Confidence            777777543

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.49  E-value=2.7e-07  Score=71.29  Aligned_cols=71  Identities=24%  Similarity=0.327  Sum_probs=42.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC---Ceec-CCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ---GVLL-QDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~---Gk~L-~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |-|.|++  .+-.+-|+|++++|+.+|+++|++.+++|...|.|+.+   ...| .++.+||+++||+.||+|+|..
T Consensus         5 milRvrS--~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~~   79 (80)
T PF11543_consen    5 MILRVRS--KDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLKP   79 (80)
T ss_dssp             -EEEEE---SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred             EEEEEEC--CCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEec
Confidence            4456666  55577899999999999999999999999999998643   2234 2445899999999999999853

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.47  E-value=8.6e-07  Score=60.65  Aligned_cols=64  Identities=25%  Similarity=0.365  Sum_probs=58.4

Q ss_pred             CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      .++....+.++++.|+.+||..|..+.|++++.+.|+++|..+.+. ..+.++++.+|+.|++..
T Consensus         5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDS-LTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEe
Confidence            3577888999999999999999999999999999999999999886 677899999999999864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>COG3577 Predicted aspartyl protease [General function prediction only]

Probab=98.25  E-value=2.8e-06  Score=76.13  Aligned_cols=78  Identities=22%  Similarity=0.249  Sum_probs=60.8

Q ss_pred             eEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhh-hhcc-ccceecccCcceeeeEEEEeeeeecccccchhHH
Q psy15482        214 VMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRL-LDTR-WAGIAKGVGVQKILGRIHMAIAELTNFNGDKKKA  291 (302)
Q Consensus       214 ~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~-~d~~-~~~~a~gvg~~~i~G~i~~~~~~ig~~~~~~~~~  291 (302)
                      -+.+++..|||++|+++|||||.+..++.+.|+|+||..- .|.. --..|.|   +.---+|..-.++||++++.-=+|
T Consensus       104 GHF~a~~~VNGk~v~fLVDTGATsVal~~~dA~RlGid~~~l~y~~~v~TANG---~~~AA~V~Ld~v~IG~I~~~nV~A  180 (215)
T COG3577         104 GHFEANGRVNGKKVDFLVDTGATSVALNEEDARRLGIDLNSLDYTITVSTANG---RARAAPVTLDRVQIGGIRVKNVDA  180 (215)
T ss_pred             CcEEEEEEECCEEEEEEEecCcceeecCHHHHHHhCCCccccCCceEEEccCC---ccccceEEeeeEEEccEEEcCchh
Confidence            3799999999999999999999999999999999999853 2222 2233444   122457888889999999887777


Q ss_pred             HHH
Q psy15482        292 LAA  294 (302)
Q Consensus       292 ~~~  294 (302)
                      |-+
T Consensus       181 ~V~  183 (215)
T COG3577         181 MVA  183 (215)
T ss_pred             hee
Confidence            644

>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.18  E-value=2.2e-06  Score=67.45  Aligned_cols=68  Identities=25%  Similarity=0.345  Sum_probs=52.9

Q ss_pred             EEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcc-eeeeEEEEeeeeecccccc
Q psy15482        215 MLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQ-KILGRIHMAIAELTNFNGD  287 (302)
Q Consensus       215 mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~-~i~G~i~~~~~~ig~~~~~  287 (302)
                      .-|+.++|||.+++|+|||||..|+|+.++....+..    .......+|+|.. ++.|.. .+.+++++....
T Consensus         5 rp~i~v~i~g~~i~~LlDTGA~vsiI~~~~~~~~~~~----~~~~~~v~~~~g~~~~~~~~-~~~v~~~~~~~~   73 (100)
T PF00077_consen    5 RPYITVKINGKKIKALLDTGADVSIISEKDWKKLGPP----PKTSITVRGAGGSSSILGST-TVEVKIGGKEFN   73 (100)
T ss_dssp             SSEEEEEETTEEEEEEEETTBSSEEESSGGSSSTSSE----EEEEEEEEETTEEEEEEEEE-EEEEEETTEEEE
T ss_pred             CceEEEeECCEEEEEEEecCCCcceeccccccccccc----ccCCceeccCCCcceeeeEE-EEEEEEECccce
Confidence            4589999999999999999999999999988777655    2334566788854 456665 778888876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....

>KOG1872|consensus

Probab=98.14  E-value=5.8e-06  Score=81.71  Aligned_cols=74  Identities=16%  Similarity=0.187  Sum_probs=67.2

Q ss_pred             EEEeCCCCeEEEEE-eCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCCC
Q psy15482          4 TVSTQHTNECFLLD-VSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSYH   78 (302)
Q Consensus         4 tV~~~~~g~~~~le-V~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~~   78 (302)
                      +|..+..|+.|+++ ++.+.|+..||+.+...+|+||+.|++.+.|+.+.|+ -.+...+|++|.+|+|.....+.
T Consensus         5 ~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd-~~~~al~iKpn~~lmMmGt~e~~   79 (473)
T KOG1872|consen    5 TVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDD-VDWGALQIKPNETLMMMGTAEAG   79 (473)
T ss_pred             eEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccccc-ccccccccCCCCEEEeecccccc
Confidence            45555799999998 9999999999999999999999999999999999986 68999999999999999887654

>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses)

Probab=97.98  E-value=1.5e-05  Score=67.29  Aligned_cols=69  Identities=17%  Similarity=0.170  Sum_probs=52.6

Q ss_pred             EEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhh-hhccccceecccC-cceeeeEEEEeeeeeccccc
Q psy15482        216 LYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRL-LDTRWAGIAKGVG-VQKILGRIHMAIAELTNFNG  286 (302)
Q Consensus       216 lyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~-~d~~~~~~a~gvg-~~~i~G~i~~~~~~ig~~~~  286 (302)
                      +-..+.|+++++.+||||||..++||.++|.++||.-. ++..+ -+. +.| .....++++.+.+.+++...
T Consensus        22 i~g~~~I~~~~~~vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~-~V~-~~g~~~~~~~~~~~~~~~i~g~~~   92 (135)
T PF08284_consen   22 ITGTFLINSIPASVLIDSGATHSFISSSFAKKLGLPLEPLPRPI-VVS-APGGSINCEGVCPDVPLSIQGHEF   92 (135)
T ss_pred             EEEEEEeccEEEEEEEecCCCcEEccHHHHHhcCCEEEEccCee-EEe-cccccccccceeeeEEEEECCeEE
Confidence            34568899999999999999999999999999998743 34433 222 233 44557888899999988654

These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.

>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats

Probab=97.90  E-value=2.4e-05  Score=61.94  Aligned_cols=64  Identities=20%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             EEEEcC-eeEEEEEcCCCccccCCHHHHHHcC---chhhhhccccceecccC--cceeeeEEEEeeeeecccc
Q psy15482        219 NCKVNG-YPVKAFIDSGAQTTIMSLACAERVN---IMRLLDTRWAGIAKGVG--VQKILGRIHMAIAELTNFN  285 (302)
Q Consensus       219 ~~~ing-~~v~a~vDsGaq~~i~s~~~a~~~g---l~~~~d~~~~~~a~gvg--~~~i~G~i~~~~~~ig~~~  285 (302)
                      .++||| +++++.|||||+.|+||.+...+.|   ..+|--+.+  ..++-+  ...+.|. +.+.+++|+.+
T Consensus         2 ~~~i~g~~~v~~~vDtGA~vnllp~~~~~~l~~~~~~~L~~t~~--~L~~~~g~~~~~~G~-~~~~v~~~~~~   71 (93)
T cd05481           2 DMKINGKQSVKFQLDTGATCNVLPLRWLKSLTPDKDPELRPSPV--RLTAYGGSTIPVEGG-VKLKCRYRNPK   71 (93)
T ss_pred             ceEeCCceeEEEEEecCCEEEeccHHHHhhhccCCCCcCccCCe--EEEeeCCCEeeeeEE-EEEEEEECCcE
Confidence            578999 9999999999999999999999998   677777765  444444  4456888 57889999876

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi

>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family

Probab=97.85  E-value=4.3e-05  Score=61.93  Aligned_cols=66  Identities=17%  Similarity=0.308  Sum_probs=47.9

Q ss_pred             EEEEEEcC------eeEEEEEcCCCcccc-CCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeeccccc
Q psy15482        217 YINCKVNG------YPVKAFIDSGAQTTI-MSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNG  286 (302)
Q Consensus       217 yi~~~ing------~~v~a~vDsGaq~~i-~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~~  286 (302)
                      |+++++.+      .+|+|+|||||...+ ++.+.|+++||... .......|.|.   ...-++....+++|+.+.
T Consensus         1 ~~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~~lgl~~~-~~~~~~tA~G~---~~~~~v~~~~v~igg~~~   73 (107)
T TIGR03698         1 TLDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVNKLGLPEL-DQRRVYLADGR---EVLTDVAKASIIINGLEI   73 (107)
T ss_pred             CEEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHHHcCCCcc-cCcEEEecCCc---EEEEEEEEEEEEECCEEE
Confidence            46677755      499999999999887 99999999999874 33334455552   334456677777777654

Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.

>KOG0006|consensus

Probab=97.81  E-value=3.6e-05  Score=72.93  Aligned_cols=72  Identities=18%  Similarity=0.313  Sum_probs=61.6

Q ss_pred             CEEEEEeCC--CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQH--TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~--~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |-+.|....  ....++|+|+.+.+|.+||+.++...|+|+++.++||.||.|.|+ .|++.+.+..-+.+|++.
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~-ttv~~cDL~qqs~~hi~~   74 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSND-TTVQNCDLSQQSATHIML   74 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccC-ceeecccccccchhhhhc
Confidence            667777632  344568999999999999999999999999999999999999996 899988888888888764

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.63  E-value=0.00012  Score=55.91  Aligned_cols=69  Identities=23%  Similarity=0.383  Sum_probs=47.6

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCC------eEEE-ECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHE------IAIE-FQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~------Q~Li-~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      +|||.. ..+..+.+.++.+.+|.+|...|-...+.+...      -+|. -+|.+|.++ .||+++||.|||+|+|.
T Consensus         4 rVtv~~-~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~-~tL~~~gV~dGd~L~L~   79 (79)
T PF08817_consen    4 RVTVDA-GNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPD-QTLADAGVRDGDVLVLR   79 (79)
T ss_dssp             EEEEE--TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETT-SBCGGGT--TT-EEEE-
T ss_pred             EEEEEc-CCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCc-CcHhHcCCCCCCEEEeC
Confidence            355555 336899999999999999999999988764432      3555 679999886 99999999999999874

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases

Probab=97.62  E-value=0.00021  Score=51.42  Aligned_cols=33  Identities=36%  Similarity=0.695  Sum_probs=31.1

Q ss_pred             EEEEEcCeeEEEEEcCCCccccCCHHHHHHcCc
Q psy15482        218 INCKVNGYPVKAFIDSGAQTTIMSLACAERVNI  250 (302)
Q Consensus       218 i~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl  250 (302)
                      |.|.+||.++++++|+||..++|+..++++.++
T Consensus         1 ~~~~~~~~~~~~liDtgs~~~~~~~~~~~~~~~   33 (92)
T cd00303           1 LKGKINGVPVRALVDSGASVNFISESLAKKLGL   33 (92)
T ss_pred             CEEEECCEEEEEEEcCCCcccccCHHHHHHcCC
Confidence            578899999999999999999999999999887

The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples

>KOG4495|consensus

Probab=97.45  E-value=0.00017  Score=57.23  Aligned_cols=63  Identities=24%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE-CC-eecCCCcccccccCCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF-QG-VLLQDNKKTLKTHGIQ   64 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~-~G-k~L~D~~~TL~~~gI~   64 (302)
                      |.++++..-...++-++.+++.||-+||.+++.-..-|++.|+|+. .. ..|.| .+||+++|..
T Consensus         1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D-~ktL~d~gft   65 (110)
T KOG4495|consen    1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDD-GKTLGDCGFT   65 (110)
T ss_pred             CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhc-cchhhhcccc
Confidence            4556555335566779999999999999999999999999999997 44 45566 5999999764

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.36  E-value=0.0013  Score=49.96  Aligned_cols=72  Identities=19%  Similarity=0.164  Sum_probs=60.4

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC----Cee-cCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ----GVL-LQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~----Gk~-L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      .||||+- .....+++-|+|..+|..+|+.|....|++- .|+|.|.    -++ |.+. .||++|||=.+-.|.|.-..
T Consensus         1 iqVtV~q-~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~-~sLA~yGiFs~~~i~lleT~   77 (80)
T cd01811           1 IQVTVEQ-TGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSR-KSLADYGIFSKTNICLLETF   77 (80)
T ss_pred             CEEEeee-cCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccccccccc-ccHhhhcceeccEEEEEecC
Confidence            3788988 8888899999999999999999999999998 9999982    233 4564 89999999888777776543

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG3493|consensus

Probab=97.25  E-value=0.00012  Score=54.13  Aligned_cols=68  Identities=19%  Similarity=0.241  Sum_probs=58.0

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      +++.. --|+..-+-..+++||+|+|.+|+.++|..++..+|---+.+++|. -+|++|.|++|--+.|-
T Consensus         4 v~~nD-rLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~-I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    4 VVLND-RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDH-ITLSDYEIHDGMNLELY   71 (73)
T ss_pred             ehhhh-hcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcc-cceeeEEeccCccEEEe
Confidence            34444 4588889999999999999999999999999999998667777886 89999999999877663

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.96  E-value=0.0042  Score=47.21  Aligned_cols=69  Identities=20%  Similarity=0.256  Sum_probs=55.8

Q ss_pred             EEEEEeC-CCCeEEEEEeCCCccHHHHHHHHHhhhCCC-----CCCeEEEECCeecCCCcccccccCCCCCCEEEE
Q psy15482          2 KVTVSTQ-HTNECFLLDVSEDLELENFKAFCEVQSGYP-----AHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLL   71 (302)
Q Consensus         2 qItV~~~-~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp-----~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L   71 (302)
                      +|||-.. -+|.+|.|.++.-.++..|-..+.+...|.     -...+..-+++.|.++ ..|.+|||.+||.|.+
T Consensus         6 kVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd-~kL~d~~IadGD~Lei   80 (81)
T COG5417           6 KVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGD-DKLIDYQIADGDILEI   80 (81)
T ss_pred             EEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCC-ceEEeccccCCCEEEe
Confidence            4554322 579999999999999999998888765543     2557888899999886 8999999999999875

>KOG1769|consensus

Probab=96.94  E-value=0.0067  Score=48.54  Aligned_cols=72  Identities=11%  Similarity=0.263  Sum_probs=63.2

Q ss_pred             EEEEEeC-CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          2 KVTVSTQ-HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         2 qItV~~~-~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|+++.. -++....+-|..++.+.-|+..-....|++.++.+++|+|+.+.+. +|-.+++.++||.|.+..-
T Consensus        20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~-~TP~~L~mEd~D~Iev~~~   92 (99)
T KOG1769|consen   20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRET-HTPADLEMEDGDEIEVVQE   92 (99)
T ss_pred             eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCC-CChhhhCCcCCcEEEEEee
Confidence            5666553 4566668899999999999999999999999999999999999986 8999999999999998754

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.92  E-value=0.0068  Score=46.15  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=60.1

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCC-eEEE--ECCeecCCCc-ccccccCCCCCCEEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHE-IAIE--FQGVLLQDNK-KTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~-Q~Li--~~Gk~L~D~~-~TL~~~gI~dgd~l~L~   72 (302)
                      +|-|+. .+|..+.-...++.||.+|...|......+... ..|+  |-.+.|.+++ +||+++|+..+.+|+|.
T Consensus         8 ~I~vRl-pdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    8 RIQVRL-PDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             EEEEEE-TTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             EEEEEC-CCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            467888 889999999999999999999999998887765 7776  6678886654 79999999999999885

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array

Probab=96.86  E-value=0.002  Score=47.01  Aligned_cols=46  Identities=37%  Similarity=0.678  Sum_probs=37.1

Q ss_pred             CCCCHH--HHHHHHhcCH----HHHHHHHhcChhHHHHhhcCChHHHHHHHHH
Q psy15482        111 LSDDPA--TVRQLLLDNP----KEIALLQQNNPRLADALLNGSPEDFERILRQ  157 (302)
Q Consensus       111 ~~~npe--~iR~~~l~NP----~~~~~L~~~NPeLa~al~~~d~e~f~~~lr~  157 (302)
                      +.++|.  .+|+++.+||    .++++|.++||+|++.|. +|++.|-+++..
T Consensus         4 Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~-~n~e~Fl~ll~~   55 (59)
T PF09280_consen    4 LRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQ-QNPEEFLRLLNE   55 (59)
T ss_dssp             GTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHH-HTHHHHHHHHHS
T ss_pred             HHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHH-HCHHHHHHHHcC
Confidence            345565  7899999998    567778999999999997 589999998853

They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.66  E-value=0.0045  Score=49.53  Aligned_cols=58  Identities=16%  Similarity=0.221  Sum_probs=43.0

Q ss_pred             EEEEEeCCC-CeEEEEEeC--CCccHHHHHHHHHhhhC--CCCCCeEEEECCeecCCCccccccc
Q psy15482          2 KVTVSTQHT-NECFLLDVS--EDLELENFKAFCEVQSG--YPAHEIAIEFQGVLLQDNKKTLKTH   61 (302)
Q Consensus         2 qItV~~~~~-g~~~~leV~--~~~TV~dLK~~Ie~e~g--Ip~~~Q~Li~~Gk~L~D~~~TL~~~   61 (302)
                      .|+|+. .+ ---.+|+|+  .+.||..||.+|....+  ..-..+||||+||.|.|. ..|+..
T Consensus         2 ~l~IRF-s~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~-t~l~~~   64 (97)
T PF10302_consen    2 YLTIRF-SDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDH-TDLSSE   64 (97)
T ss_pred             eEEEEE-CCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCcc-chhhhh
Confidence            367776 32 122567777  88999999999999973  445678999999999986 555544

They contain a characteristic GFDRL sequence motif.

>KOG1639|consensus

Probab=96.62  E-value=0.0044  Score=57.30  Aligned_cols=73  Identities=21%  Similarity=0.306  Sum_probs=57.3

Q ss_pred             CEEEEEeCCCCeEEE-EEeCCCccHHHHH-HHHHhhhCCCCCCeEEEE----CCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFL-LDVSEDLELENFK-AFCEVQSGYPAHEIAIEF----QGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~-leV~~~~TV~dLK-~~Ie~e~gIp~~~Q~Li~----~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |.||+...+.|...+ .+.+...|+.|++ +....+..+.+..+|+.+    +|++|.|+ .+|++||...|++|.+..-
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~-s~l~e~~~~s~~~i~vKDL   79 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDN-SKLQEYGDGSGATIYVKDL   79 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccch-hHHHHhccCCCCEEEEecc
Confidence            889998744555655 7888899999999 555666778886665554    79999997 7999999999999887543

>KOG3206|consensus

Probab=96.62  E-value=0.0065  Score=54.72  Aligned_cols=75  Identities=21%  Similarity=0.298  Sum_probs=60.9

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE-ECC-----eecCCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE-FQG-----VLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li-~~G-----k~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +|.|++.++.-......++++||.+||.+++..+|.+++.+.|. |.|     -.|.|+++.|..|+..||-.||++-..
T Consensus         3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~   82 (234)
T KOG3206|consen    3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN   82 (234)
T ss_pred             EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence            45666633444456778999999999999999999999999996 655     457777789999999999999998765


Q ss_pred             C
Q psy15482         76 S   76 (302)
Q Consensus        76 ~   76 (302)
                      +
T Consensus        83 ~   83 (234)
T KOG3206|consen   83 A   83 (234)
T ss_pred             c
Confidence            3

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.56  E-value=0.015  Score=44.38  Aligned_cols=70  Identities=10%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecCCC--cccccccCCCCCCEEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQDN--KKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~D~--~~TL~~~gI~dgd~l~L~   72 (302)
                      +|-|+. .+|..+.....++.||.+|.+.|....+.+.....|+  |-.+.+.++  ++||.++|+..+.+|+|.
T Consensus         6 ~I~iRl-PdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166        6 RLQIRL-PDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             EEEEEc-CCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence            477888 8999999999999999999999977677776777886  567778653  479999999999998874

Present in FAF1 and Shp1p.

>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases

Probab=96.52  E-value=0.0043  Score=48.67  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=23.4

Q ss_pred             EEEEcCeeEEEEEcCCCccccCCHHH
Q psy15482        219 NCKVNGYPVKAFIDSGAQTTIMSLAC  244 (302)
Q Consensus       219 ~~~ing~~v~a~vDsGaq~~i~s~~~  244 (302)
                      .++|+|+++.|++||||..||++...
T Consensus         2 ~~~i~g~~~~~llDTGAd~Tvi~~~~   27 (87)
T cd05482           2 TLYINGKLFEGLLDTGADVSIIAEND   27 (87)
T ss_pred             EEEECCEEEEEEEccCCCCeEEcccc
Confidence            57899999999999999999999743

This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro

>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.46  E-value=0.009  Score=52.18  Aligned_cols=49  Identities=22%  Similarity=0.443  Sum_probs=40.7

Q ss_pred             EEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhh--ccccceecc
Q psy15482        216 LYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLD--TRWAGIAKG  264 (302)
Q Consensus       216 lyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d--~~~~~~a~g  264 (302)
                      +-+++.|+|.+|++|+|||+-+++|++..+++++|..+--  .||+|...|
T Consensus        35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~di~~kL~L~~~~app~~fRG~vs~   85 (177)
T PF12384_consen   35 AIVQLNCKGTPIKVLFDSGSPTSFIRSDIVEKLELPTHDAPPFRFRGFVSG   85 (177)
T ss_pred             EEEEEeecCcEEEEEEeCCCccceeehhhHHhhCCccccCCCEEEeeeccC
Confidence            4567889999999999999999999999999999997543  356665554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=96.44  E-value=0.013  Score=43.48  Aligned_cols=62  Identities=10%  Similarity=0.085  Sum_probs=45.5

Q ss_pred             CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEE
Q psy15482          9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLL   71 (302)
Q Consensus         9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L   71 (302)
                      .++..+.+.|.|++++.++-+..=.++|+++++-.|.|++|+|+-. -++.-.|+-+|..|.|
T Consensus         4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldls-lp~R~snL~n~akLeL   65 (65)
T PF11470_consen    4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLS-LPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS--BHHHH---SS-EEEE
T ss_pred             cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccc-cceeecCCCCCCEEeC
Confidence            4788999999999999999999999999999999999999999664 8999999999998865

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=96.44  E-value=0.023  Score=42.95  Aligned_cols=69  Identities=17%  Similarity=0.292  Sum_probs=54.2

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecCC--CcccccccCCCCCCEEEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQD--NKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~D--~~~TL~~~gI~dgd~l~L~~   73 (302)
                      +|-|+. .+|+.+......+.||.+|.+.|.....- .....|+  |-.+.+.+  .+.||+++|+. ++++.+..
T Consensus         4 ~i~iRl-pdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~~   76 (77)
T cd01767           4 KIQIRL-PDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQRL   76 (77)
T ss_pred             EEEEEc-CCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEEe
Confidence            467888 88999999999999999999999877543 4556676  55677865  56899999999 56666543

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []

Probab=96.29  E-value=0.0024  Score=55.01  Aligned_cols=29  Identities=24%  Similarity=0.443  Sum_probs=26.4

Q ss_pred             eeEEEEEcCCCccccCCHHHHHHcCchhh
Q psy15482        225 YPVKAFIDSGAQTTIMSLACAERVNIMRL  253 (302)
Q Consensus       225 ~~v~a~vDsGaq~~i~s~~~a~~~gl~~~  253 (302)
                      ++++||+|||+|.|+|+.++|+++||...
T Consensus        11 ~~~~~LlDsGSq~SfIt~~la~~L~L~~~   39 (164)
T PF05585_consen   11 VEARALLDSGSQRSFITESLANKLNLPGT   39 (164)
T ss_pred             EEEEEEEecCCchhHHhHHHHHHhCCCCC
Confidence            45889999999999999999999999853

However, it seems likely that these proteins act as aspartic peptidases.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=96.07  E-value=0.036  Score=42.54  Aligned_cols=67  Identities=12%  Similarity=0.186  Sum_probs=53.9

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCC-CCCeEEE--ECCeecCCCcccccccCCCCCCEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYP-AHEIAIE--FQGVLLQDNKKTLKTHGIQDGDLVL   70 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp-~~~Q~Li--~~Gk~L~D~~~TL~~~gI~dgd~l~   70 (302)
                      +|-|+. .+|+.+......+.||.+|.+.|..+.+-+ .....|.  |=.|.|.|++.||+++|+.+ +.|.
T Consensus         6 ~iqiRl-pdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~-s~v~   75 (79)
T cd01770           6 SIQIRL-ADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLN-AVIV   75 (79)
T ss_pred             EEEEEC-CCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcC-cEEE
Confidence            467888 899999999999999999999999876432 3556776  66888977779999999995 4443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=95.89  E-value=0.036  Score=40.21  Aligned_cols=56  Identities=18%  Similarity=0.315  Sum_probs=43.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|..    +  .+++..+.|+.+||..+..+.      =.++|||-+.+++      +-+++||.|++..|
T Consensus         1 M~I~vN~----k--~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d------~~L~e~D~v~~Ikk   56 (57)
T PF14453_consen    1 MKIKVNE----K--EIETEENTTLFELRKESKPDA------DIVILNGFPTKED------IELKEGDEVFLIKK   56 (57)
T ss_pred             CEEEECC----E--EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCc------cccCCCCEEEEEeC
Confidence            6777643    2  578889999999999876533      3789999998764      46889999998775

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=95.84  E-value=0.062  Score=41.08  Aligned_cols=69  Identities=12%  Similarity=0.284  Sum_probs=55.6

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecCC--CcccccccCCCCCCEEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQD--NKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~D--~~~TL~~~gI~dgd~l~L~   72 (302)
                      +|-|+. .+|+.+.-..+.+.|+.+|.+.|+...+.+ ....|+  |--|.+.+  .++||+++|+.+..+|+|.
T Consensus         6 ~i~iRl-p~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~   78 (79)
T cd01772           6 RIQIRL-LDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT   78 (79)
T ss_pred             EEEEEC-CCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence            467888 889999889999999999999999765543 446665  66788853  3589999999999998874

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=95.68  E-value=0.066  Score=46.71  Aligned_cols=66  Identities=14%  Similarity=0.120  Sum_probs=50.9

Q ss_pred             CEEEEEeCCCC----eEEEEEeCCCccHHHHHHHHHhhhCCCCCCe-EEEE-CCeec-CCCcccccccCCCCCC
Q psy15482          1 MKVTVSTQHTN----ECFLLDVSEDLELENFKAFCEVQSGYPAHEI-AIEF-QGVLL-QDNKKTLKTHGIQDGD   67 (302)
Q Consensus         1 MqItV~~~~~g----~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q-~Li~-~Gk~L-~D~~~TL~~~gI~dgd   67 (302)
                      |+|+|++ .+|    .++.+.+++++||.+|+..|....++|...| .|++ .|+.| .+++..++++.-.+++
T Consensus         1 i~Vlvss-~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~   73 (162)
T PF13019_consen    1 INVLVSS-FDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD   73 (162)
T ss_pred             CeEEEec-CCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence            6899999 888    5889999999999999999999999999884 4555 34455 3333567777655544

>PRK06437 hypothetical protein; Provisional

Probab=95.08  E-value=0.16  Score=37.67  Aligned_cols=60  Identities=13%  Similarity=0.253  Sum_probs=46.5

Q ss_pred             EEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          4 TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         4 tV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      .|+. ..++..++++++..||.+|-+.    .|+++....+..||+++..      ++-+++||.|.++.-
T Consensus         4 ~~~v-~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~------~~~L~dgD~Veiv~~   63 (67)
T PRK06437          4 MIRV-KGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLE------DHNVKKEDDVLILEV   63 (67)
T ss_pred             eEEe-cCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCC------ceEcCCCCEEEEEec
Confidence            4444 3455577888999999998755    4889998999999999963      446899999998753

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=95.05  E-value=0.18  Score=39.29  Aligned_cols=69  Identities=12%  Similarity=0.073  Sum_probs=55.8

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC--eecC-------CCcccccccCCCCCCEEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG--VLLQ-------DNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G--k~L~-------D~~~TL~~~gI~dgd~l~L~   72 (302)
                      +|-|+. .+|....-....+.||++|...|.. .+..+....|+.+=  |.+.       |.+.||++.|+....+|++.
T Consensus         6 ~I~iRl-p~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~   83 (85)
T cd01774           6 KIVFKL-PNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ   83 (85)
T ss_pred             EEEEEC-CCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence            567888 8899988888999999999999964 45566788888755  7785       33479999999998888774

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=94.65  E-value=0.26  Score=37.91  Aligned_cols=70  Identities=21%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC--CCcccccccCCCCCCEEEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ--DNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~--D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      +|-|+. .+|....-....++++.+|-..|..+ |.+....+|+  |=-|.+.  |.+.||.+.|+....+|+|.-
T Consensus         6 ~i~iRl-P~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Vee   79 (80)
T cd01771           6 KLRVRT-PSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEE   79 (80)
T ss_pred             EEEEEC-CCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEc
Confidence            567788 88999888999999999999999875 7777888887  5567774  444799999999999998753

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=94.38  E-value=0.28  Score=36.50  Aligned_cols=51  Identities=12%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482         13 CFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus        13 ~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      ...+++++.+||.+|.+.+    +++...-.+..||..+..      +.-+++||.|.+..
T Consensus        15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~------~~~l~~gD~Veii~   65 (70)
T PRK08364         15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE------DDPVKDGDYVEVIP   65 (70)
T ss_pred             ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC------CcCcCCCCEEEEEc
Confidence            5678889999999988765    677777788899999854      34589999998865

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=94.36  E-value=0.37  Score=37.46  Aligned_cols=71  Identities=17%  Similarity=0.277  Sum_probs=59.2

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC--CCcccccccCCCCCCEEEEEEe
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ--DNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~--D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|-|+. .+|+...-....+.++.+|-..|.. .|.+++...|+  |==|++.  |.+.||+++|+..-.+|+|.-|
T Consensus         7 ~i~vRl-P~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r   81 (82)
T cd01773           7 RLMLRY-PDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER   81 (82)
T ss_pred             EEEEEC-CCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence            578888 8999998889999999999999998 57788888887  5456663  3347999999999999998644

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG0013|consensus

Probab=94.28  E-value=0.079  Score=47.95  Aligned_cols=64  Identities=23%  Similarity=0.274  Sum_probs=56.6

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +++.+.+.+..-.|+.++|..+.+..|+++-.|+++|+|++|.|. ..|++|+|..|..-++-..
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dk-t~LeEc~iekg~rYvlqvi  218 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDK-TDLEECKIEKGQRYVLQVI  218 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceecc-ccceeeeecCCCEEEEEEE
Confidence            577788899999999999999999999999999999999999985 7899999999966554433

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=94.09  E-value=0.33  Score=35.43  Aligned_cols=60  Identities=20%  Similarity=0.251  Sum_probs=44.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|    +|+.+.+  + ..|+.+|...+    ++++....+-+||..+..  ....+.-+++||.|.+..
T Consensus         1 m~i~~----Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~--~~~~~~~L~dgD~Ieiv~   60 (65)
T PRK06488          1 MKLFV----NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK--EARAQFVLHEGDRIEILS   60 (65)
T ss_pred             CEEEE----CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH--HHcCccccCCCCEEEEEE
Confidence            55555    5666665  3 46898888765    677766677899999864  366777899999999875

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=94.02  E-value=0.25  Score=36.27  Aligned_cols=61  Identities=23%  Similarity=0.335  Sum_probs=45.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|    +|+.+  ++++..|+.+|-..    .+++.....+.+||..+...  ..+.+ +++||.|.++.-
T Consensus         1 m~i~v----NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~--~~~~~-L~~gD~ieIv~~   61 (65)
T PRK05863          1 MIVVV----NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRS--DWATK-LRDGARLEVVTA   61 (65)
T ss_pred             CEEEE----CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChh--Hhhhh-cCCCCEEEEEee
Confidence            56665    45544  45577888887554    58999999999999988653  44556 999999998754

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=93.87  E-value=0.12  Score=39.41  Aligned_cols=56  Identities=21%  Similarity=0.246  Sum_probs=46.3

Q ss_pred             eCCCccHHHHHHHHHhhhC-CCCCCeEEEECCeecCCCccccccc-CCCCCCEEEEEEe
Q psy15482         18 VSEDLELENFKAFCEVQSG-YPAHEIAIEFQGVLLQDNKKTLKTH-GIQDGDLVLLKHL   74 (302)
Q Consensus        18 V~~~~TV~dLK~~Ie~e~g-Ip~~~Q~Li~~Gk~L~D~~~TL~~~-gI~dgd~l~L~~~   74 (302)
                      |+++++|.|++..+..... ..-....|.|+|+.|++. ..|+++ |+++|..|.|+..
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~-~el~~i~~~~~~~~L~lve~   58 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDF-VELSEIEGIKDGCVLELVEE   58 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCc-hhhhhhhCCCCCcEEEEEec
Confidence            6789999999998887644 556788999999999775 677777 6999999999865

>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=0.29  Score=40.90  Aligned_cols=52  Identities=15%  Similarity=0.245  Sum_probs=40.5

Q ss_pred             EEcCCCc-cccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecccc
Q psy15482        230 FIDSGAQ-TTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFN  285 (302)
Q Consensus       230 ~vDsGaq-~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~  285 (302)
                      +||||+. +.+++++.|++.|+..+-..|..-.+.|    +..=+||.+-++|++.+
T Consensus        30 LiDTGFtg~lvlp~~vaek~~~~~~~~~~~~~a~~~----~v~t~V~~~~iki~g~e   82 (125)
T COG5550          30 LIDTGFTGYLVLPPQVAEKLGLPLFSTIRIVLADGG----VVKTSVALATIKIDGVE   82 (125)
T ss_pred             EEecCCceeEEeCHHHHHhcCCCccCChhhhhhcCC----EEEEEEEEEEEEECCEE
Confidence            7999999 9999999999999998744444444444    66777888888887744

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=92.98  E-value=0.57  Score=34.03  Aligned_cols=62  Identities=18%  Similarity=0.389  Sum_probs=45.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|    +|+  +++++...||.+|-..    .|++...-.+.+||..+..  ..-.+.-+++||.|.+..-
T Consensus         1 m~i~v----NG~--~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r--~~~~~~~l~~gD~vei~~~   62 (66)
T PRK05659          1 MNIQL----NGE--PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPR--SQHASTALREGDVVEIVHA   62 (66)
T ss_pred             CEEEE----CCe--EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCH--HHcCcccCCCCCEEEEEEE
Confidence            56655    444  3567778898887654    5889988899999998864  2345556999999998754

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=92.48  E-value=0.51  Score=37.35  Aligned_cols=63  Identities=10%  Similarity=0.173  Sum_probs=56.2

Q ss_pred             CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      -++..+-+.|..+++..-|........|=..++.|+.|+|+.+.-+ +|-.+++..++|.|..+
T Consensus        32 qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~d-qTP~dldmEdnd~iEav   94 (103)
T COG5227          32 QDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLD-QTPGDLDMEDNDEIEAV   94 (103)
T ss_pred             CCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCC-CChhhcCCccchHHHHH
Confidence            4566677889999999999999999999999999999999999876 89999999999988654

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=92.06  E-value=1.1  Score=32.83  Aligned_cols=62  Identities=15%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|    +|+.  ++++...||.+|...    .+++.....+-.||..+..  ..-++.-+++||.|.+..-
T Consensus         1 m~i~v----Ng~~--~~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r--~~w~~~~L~~gD~Ieii~~   62 (66)
T PRK08053          1 MQILF----NDQP--MQCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR--EQWAQHIVQDGDQILLFQV   62 (66)
T ss_pred             CEEEE----CCeE--EEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh--HHcCccccCCCCEEEEEEE
Confidence            66666    4454  455777899988765    4566666778899999863  3456667999999998753

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=91.89  E-value=0.97  Score=33.42  Aligned_cols=62  Identities=15%  Similarity=0.257  Sum_probs=45.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCC-ccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSED-LELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~-~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|    +|+.+  +++.. .||.+|-+    ..++++..-.+-+||..+..  ..-+++-+++||.|.++.-
T Consensus         1 m~I~v----NG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r--~~w~~~~L~~gD~iEIv~~   63 (67)
T PRK07696          1 MNLKI----NGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQK--DDHTDTSVFDGDQIEIVTF   63 (67)
T ss_pred             CEEEE----CCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEEE
Confidence            55655    45544  55555 67887765    35788888888899999965  3677778999999998754

>PRK07440 hypothetical protein; Provisional

Probab=91.74  E-value=0.9  Score=33.96  Aligned_cols=57  Identities=21%  Similarity=0.374  Sum_probs=44.8

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|+.  ++++...||.+|-.    +.++++....+-+||..+.-  ..-.+.-+++||.|.++.-
T Consensus        10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r--~~w~~~~L~~gD~IEIv~~   66 (70)
T PRK07440         10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR--QFWEQTQVQPGDRLEIVTI   66 (70)
T ss_pred             CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEEE
Confidence            5664  56677899998765    45788888889999999964  3567778999999998754

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=91.28  E-value=1.1  Score=35.23  Aligned_cols=66  Identities=14%  Similarity=0.125  Sum_probs=47.4

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE----CCee-cCCCcccccccCCCCCCEEEEEEecC
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF----QGVL-LQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~----~Gk~-L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      -+..++...+..+||..++..+.+.+.| ..+-||.-    ++.. |.+.+.||++.||.+|-+|.+-.+..
T Consensus        12 l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~   82 (88)
T PF14836_consen   12 LQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE   82 (88)
T ss_dssp             CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred             cccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence            3567888999999999999999999999 66789963    3444 56655799999999999999987753

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=90.89  E-value=0.82  Score=33.27  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|+.  ++++...||.+|.+.+    +++.+...+.+||+.+..  ..-++.-+++||.|.+..-
T Consensus         5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~--~~~~~~~L~~gD~V~ii~~   61 (65)
T cd00565           5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPR--SEWASTPLQDGDRIEIVTA   61 (65)
T ss_pred             CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH--HHcCceecCCCCEEEEEEe
Confidence            4444  5566788999988775    478888888899999864  2445567999999998753

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=90.74  E-value=1.9  Score=31.11  Aligned_cols=60  Identities=15%  Similarity=0.270  Sum_probs=40.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|    +|+.  +++++..||.+|.+.+    +++ ....+-+||..+...  .-.+.-+++||.|.+..
T Consensus         1 m~i~v----Ng~~--~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~--~~~~~~L~~gD~vei~~   60 (65)
T PRK06944          1 MDIQL----NQQT--LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVART--QHAARALAAGDRLDLVQ   60 (65)
T ss_pred             CEEEE----CCEE--EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCch--hcccccCCCCCEEEEEe
Confidence            55555    4444  5667788999988765    343 345677899988531  33444589999999875

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=90.66  E-value=1.1  Score=34.84  Aligned_cols=57  Identities=12%  Similarity=0.191  Sum_probs=44.2

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|+.  .++++..||.+|-..    .++++..-.+-+||..+.-  ..-+++-+++||.|.++.-
T Consensus        24 NG~~--~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr--~~w~~t~L~egD~IEIv~~   80 (84)
T PRK06083         24 NDQS--IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR--SEWQSTVLSSGDAISLFQA   80 (84)
T ss_pred             CCeE--EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH--HHcCcccCCCCCEEEEEEE
Confidence            5554  455677888887664    4788888888899999964  4677888999999998753

>TIGR02958 sec_mycoba_snm4 secretion protein snm4

Probab=90.26  E-value=1.7  Score=43.85  Aligned_cols=72  Identities=19%  Similarity=0.230  Sum_probs=53.7

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCC------CCCCeEEE-ECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGY------PAHEIAIE-FQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gI------p~~~Q~Li-~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|||..  ......+-++.+..|.+|---|-...|=      +...-.|. -+|.+|+.+ .||.+.||.|||+++|+..
T Consensus         4 RVtV~~--~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~-~sL~~~gV~DG~~L~L~p~   80 (452)
T TIGR02958         4 RVTVLA--GRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPD-ASLAEAGVRDGELLVLVPA   80 (452)
T ss_pred             EEEEee--CCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCC-CCHHHcCCCCCCeEEEeeC
Confidence            567776  3455788899999999998877666543      12223443 488899875 9999999999999999875


Q ss_pred             cC
Q psy15482         75 GS   76 (302)
Q Consensus        75 ~~   76 (302)
                      ..
T Consensus        81 ~~   82 (452)
T TIGR02958        81 SA   82 (452)
T ss_pred             CC
Confidence            43

Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=90.00  E-value=1.5  Score=32.65  Aligned_cols=55  Identities=16%  Similarity=0.134  Sum_probs=41.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHhhhCC----CCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482         13 CFLLDVSEDLELENFKAFCEVQSGY----PAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus        13 ~~~leV~~~~TV~dLK~~Ie~e~gI----p~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      ...+++++..||.+|.+.+....+-    ......+..||+....      +.-|++||.|.+..
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~------~~~l~~gD~v~i~p   75 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL------DTPLKDGDEVAIIP   75 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC------CcccCCCCEEEEeC
Confidence            4577888899999999999887542    3345567789998863      34599999999864

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=89.93  E-value=1.3  Score=33.58  Aligned_cols=67  Identities=10%  Similarity=0.093  Sum_probs=44.7

Q ss_pred             CEEEEEeC-----CCC-eEEEEEeCCCccHHHHHHHHHhhh-CCCC--CCeEEEECCeecCCCcccccccCCCCCCEEEE
Q psy15482          1 MKVTVSTQ-----HTN-ECFLLDVSEDLELENFKAFCEVQS-GYPA--HEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLL   71 (302)
Q Consensus         1 MqItV~~~-----~~g-~~~~leV~~~~TV~dLK~~Ie~e~-gIp~--~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L   71 (302)
                      |+|+|+.-     ..| ...+++++...||.+|+..+.... ++..  ..-.+..||+...+      +.-+++||.|.+
T Consensus         2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~------~~~l~dgDeVai   75 (82)
T PLN02799          2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE------SAALKDGDELAI   75 (82)
T ss_pred             eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC------CcCcCCCCEEEE
Confidence            67888741     123 456788888999999999887664 1111  11245678887643      235899999988


Q ss_pred             EE
Q psy15482         72 KH   73 (302)
Q Consensus        72 ~~   73 (302)
                      ..
T Consensus        76 ~P   77 (82)
T PLN02799         76 IP   77 (82)
T ss_pred             eC
Confidence            64

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=89.91  E-value=1.2  Score=32.26  Aligned_cols=57  Identities=16%  Similarity=0.324  Sum_probs=42.4

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|+.  ++++...||.+|...+    ++++....+.+||+.+..  ..-.++-+++||.|.+..-
T Consensus         4 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~--~~~~~~~L~~gD~veii~~   60 (64)
T TIGR01683         4 NGEP--VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPR--SEWDDTILKEGDRIEIVTF   60 (64)
T ss_pred             CCeE--EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH--HHcCceecCCCCEEEEEEe
Confidence            4555  4556778999988764    577777888899999853  2455667999999998753

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>smart00666 PB1 PB1 domain

Probab=89.51  E-value=1.3  Score=33.21  Aligned_cols=45  Identities=20%  Similarity=0.342  Sum_probs=38.1

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ   47 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~   47 (302)
                      ++||...++.++.+.++++.|..+|+.+|...++++.....|.|.
T Consensus         2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~   46 (81)
T smart00666        2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ   46 (81)
T ss_pred             ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence            345554478899999999999999999999999998877888775

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=89.10  E-value=1.5  Score=33.98  Aligned_cols=36  Identities=14%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC
Q psy15482         13 CFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG   48 (302)
Q Consensus        13 ~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G   48 (302)
                      ++.+.|+++.+..+|..+|..+.++|++...|.|.-
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd   47 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS   47 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence            889999999999999999999999999999999954

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=88.07  E-value=4.5  Score=30.21  Aligned_cols=64  Identities=14%  Similarity=0.307  Sum_probs=48.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |.++|..  +|+  +++++...|+.||-+.    .|+++..-.+.+||.++..  .--++.-+++||.|.++.-
T Consensus         1 ~~m~i~~--ng~--~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr--~~~~~~~l~~gD~ievv~~   64 (68)
T COG2104           1 MPMTIQL--NGK--EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPR--SQWADTILKEGDRIEVVRV   64 (68)
T ss_pred             CcEEEEE--CCE--EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccc--hhhhhccccCCCEEEEEEe
Confidence            5566666  455  4677777999998765    5788888899999999974  2456677999999988754

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=87.31  E-value=4.8  Score=29.88  Aligned_cols=66  Identities=12%  Similarity=0.106  Sum_probs=47.8

Q ss_pred             EEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCC-CCeEEEE----CC--eecCCCcccccccCCC--CCCEEEEE
Q psy15482          5 VSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA-HEIAIEF----QG--VLLQDNKKTLKTHGIQ--DGDLVLLK   72 (302)
Q Consensus         5 V~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~-~~Q~Li~----~G--k~L~D~~~TL~~~gI~--dgd~l~L~   72 (302)
                      |.. ++|...+++|++++|+.+|-..|....|+.. +-.-|.|    +|  .-|..+ ++|.++...  ...++++.
T Consensus         1 V~l-lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~-k~l~~q~~~~~~~~~l~fr   75 (80)
T PF09379_consen    1 VRL-LDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLD-KKLKKQLKKNNPPFTLYFR   75 (80)
T ss_dssp             EEE-SSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SS-SBGGGSTBTSSSSEEEEEE
T ss_pred             CCC-cCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCc-ccHHHHcCCCCCCEEEEEE
Confidence            455 7889999999999999999999999999875 4456777    23  224444 788888777  33334443

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>KOG4583|consensus

Probab=87.17  E-value=0.3  Score=47.17  Aligned_cols=58  Identities=14%  Similarity=0.171  Sum_probs=42.5

Q ss_pred             EEEEeCCCccHHHHHHHHHhhhC-CC-CCCeEEEECCeecCCCcccccccCCCC--CCEEEEE
Q psy15482         14 FLLDVSEDLELENFKAFCEVQSG-YP-AHEIAIEFQGVLLQDNKKTLKTHGIQD--GDLVLLK   72 (302)
Q Consensus        14 ~~leV~~~~TV~dLK~~Ie~e~g-Ip-~~~Q~Li~~Gk~L~D~~~TL~~~gI~d--gd~l~L~   72 (302)
                      .+|+.+-..||++||..++.-.- =| ..+|||+|.||.|.|. ..|++.=+|.  -+++||+
T Consensus        24 l~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~-qcl~d~lrkq~k~Hv~hlv   85 (391)
T KOG4583|consen   24 LSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDH-QCLTDWLRKQVKEHVKHLV   85 (391)
T ss_pred             eeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccc-hhHHHHHHHHHHHHHHHHh
Confidence            46677778899999999987642 22 3679999999999885 7888875543  3445554

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=86.61  E-value=2  Score=33.64  Aligned_cols=63  Identities=19%  Similarity=0.225  Sum_probs=44.7

Q ss_pred             eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482         12 ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus        12 ~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      ..+...++=...+..||.+++...|++-+.-.++..+..|..+ ++|-+.||+-.-+|-+..-.
T Consensus         3 ~vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~-k~L~dQcVqgeGlVQlnvQi   65 (88)
T PF11620_consen    3 DVIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPH-KSLVDQCVQGEGLVQLNVQI   65 (88)
T ss_dssp             EEEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TT-SBTTTSS----SEEEEEEEE
T ss_pred             ceEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCC-ccHHHhhccccCEEEEEEEE
Confidence            4555666777899999999999999999999999999889886 99999999998888876543

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>cd06094 RP_Saci_like RP_Saci_like, retropepsin family

Probab=85.87  E-value=0.75  Score=36.32  Aligned_cols=52  Identities=12%  Similarity=0.201  Sum_probs=34.0

Q ss_pred             eEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcc--eeeeEEEEeeeeeccc
Q psy15482        226 PVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQ--KILGRIHMAIAELTNF  284 (302)
Q Consensus       226 ~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~--~i~G~i~~~~~~ig~~  284 (302)
                      .+++||||||..++++....++-    +.+..+  .-.+....  ++.| .+.+.+.+|.-
T Consensus         9 ~~~fLVDTGA~vSviP~~~~~~~----~~~~~~--~l~AANgt~I~tyG-~~~l~ldlGlr   62 (89)
T cd06094           9 GLRFLVDTGAAVSVLPASSTKKS----LKPSPL--TLQAANGTPIATYG-TRSLTLDLGLR   62 (89)
T ss_pred             CcEEEEeCCCceEeecccccccc----ccCCce--EEEeCCCCeEeeee-eEEEEEEcCCC
Confidence            47999999999999997765542    222223  44455544  4578 55777777653

Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=85.86  E-value=4  Score=31.56  Aligned_cols=44  Identities=7%  Similarity=0.128  Sum_probs=35.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCC-CCeEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA-HEIAIEF   46 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~-~~Q~Li~   46 (302)
                      |+|.+..  +|+++-+.++++.++.+|++.|...+++.. ....|.|
T Consensus         1 ~~vK~~~--~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY   45 (82)
T cd06407           1 VRVKATY--GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY   45 (82)
T ss_pred             CEEEEEe--CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence            3444444  788999999999999999999999999875 5667766

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=85.21  E-value=1.1  Score=29.60  Aligned_cols=20  Identities=35%  Similarity=0.617  Sum_probs=9.4

Q ss_pred             HhcCHHHHHHHHhcChhHHH
Q psy15482        122 LLDNPKEIALLQQNNPRLAD  141 (302)
Q Consensus       122 ~l~NP~~~~~L~~~NPeLa~  141 (302)
                      +.+||+.+..+.+.||+++.
T Consensus        20 ~~~nP~~~~~~~~~nP~~~~   39 (41)
T smart00727       20 MQQNPDMLAQMLQENPQLLQ   39 (41)
T ss_pred             HHHCHHHHHHHHHhCHHhHh
Confidence            33455544444333555543

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=84.92  E-value=4  Score=30.55  Aligned_cols=45  Identities=9%  Similarity=0.282  Sum_probs=37.2

Q ss_pred             EEEEeCCCCeEEE-EEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC
Q psy15482          3 VTVSTQHTNECFL-LDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ   47 (302)
Q Consensus         3 ItV~~~~~g~~~~-leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~   47 (302)
                      +.||....+..+- +.+..+.|..+|+..|+..++.+.....|.|.
T Consensus         2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~   47 (84)
T PF00564_consen    2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK   47 (84)
T ss_dssp             EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred             EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence            3455434677776 99999999999999999999999888888883

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>PRK01777 hypothetical protein; Validated

Probab=84.89  E-value=7.3  Score=30.99  Aligned_cols=63  Identities=17%  Similarity=0.117  Sum_probs=42.8

Q ss_pred             CEEEEEeCCC--CeEEEEEeCCCccHHHHHHHHHhhhCCCCC--C-----eEEEECCeecCCCcccccccCCCCCCEEEE
Q psy15482          1 MKVTVSTQHT--NECFLLDVSEDLELENFKAFCEVQSGYPAH--E-----IAIEFQGVLLQDNKKTLKTHGIQDGDLVLL   71 (302)
Q Consensus         1 MqItV~~~~~--g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~--~-----Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L   71 (302)
                      |+|+|..-..  .....+++++.+||.++-..+    ||+..  +     -.+.-+|+...-      +.-+++||.|-+
T Consensus         4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~------d~~L~dGDRVeI   73 (95)
T PRK01777          4 IRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL------TDVLRDGDRVEI   73 (95)
T ss_pred             eEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC------CCcCCCCCEEEE
Confidence            5777765222  334578999999999976654    66555  2     355567776643      336899999998


Q ss_pred             EE
Q psy15482         72 KH   73 (302)
Q Consensus        72 ~~   73 (302)
                      .+
T Consensus        74 yr   75 (95)
T PRK01777         74 YR   75 (95)
T ss_pred             ec
Confidence            65

>KOG4250|consensus

Probab=82.94  E-value=2.2  Score=45.07  Aligned_cols=69  Identities=20%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCC-cccccccCCCCCCEEEEE
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDN-KKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~-~~TL~~~gI~dgd~l~L~   72 (302)
                      |+|-.-.+...+.+-|+++.|+.+|++.|...+|||...|.|+|.|...... +++-.--| .+.++..+.
T Consensus       316 vhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~~~Q~~~dg-~~~~l~l~~  385 (732)
T KOG4250|consen  316 VHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLEDSAQCIPDG-LDSPLYLVS  385 (732)
T ss_pred             eEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCcccccCCCC-CCCceEEEe
Confidence            4443324677889999999999999999999999999999999987654332 22322334 344544443

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=82.90  E-value=4.2  Score=39.37  Aligned_cols=64  Identities=17%  Similarity=0.279  Sum_probs=48.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|    +|+.  +++++..||.+|-..    .+++.+...+.+||+++..  ..-.++-+++||.|.++.-.+
T Consensus         1 M~I~V----NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr--~~w~~t~LkeGD~IEII~~Vg   64 (326)
T PRK11840          1 MRIRL----NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR--SEYGQVALEEGDELEIVHFVG   64 (326)
T ss_pred             CEEEE----CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH--HHcCccccCCCCEEEEEEEec
Confidence            56655    4454  566778898887654    5899999999999999964  356777899999999987653

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=82.84  E-value=3.1  Score=32.09  Aligned_cols=42  Identities=14%  Similarity=0.174  Sum_probs=36.1

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ   47 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~   47 (302)
                      |||.+   .-++.+.|.+..+..+|..+|+++...+++.-.|.|.
T Consensus         1 ~~Vh~---~fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~   42 (78)
T cd06411           1 VTVQC---AFTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR   42 (78)
T ss_pred             CEEEE---EEEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence            35555   3456789999999999999999999999999999994

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=82.54  E-value=8.7  Score=30.11  Aligned_cols=42  Identities=12%  Similarity=0.217  Sum_probs=36.0

Q ss_pred             EEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCC---CCeEEEE
Q psy15482          4 TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA---HEIAIEF   46 (302)
Q Consensus         4 tV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~---~~Q~Li~   46 (302)
                      .++. .+|.++-+.+.|+..+.+|++.|..++|+..   ....|.|
T Consensus         4 K~~~-~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           4 KFKD-PKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             EeeC-CCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            3556 6899999999999999999999999999997   4666666

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>KOG2982|consensus

Probab=81.88  E-value=3.2  Score=40.23  Aligned_cols=59  Identities=17%  Similarity=0.191  Sum_probs=47.0

Q ss_pred             EEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE---CCeec----CCCcccccccCCCCCCEEEEEE
Q psy15482         15 LLDVSEDLELENFKAFCEVQSGYPAHEIAIEF---QGVLL----QDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus        15 ~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~---~Gk~L----~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      +.-|+-.-||.|||..++.+.|+.++.++|+|   .||.-    .|..+.|-.|+|++||-+.+..
T Consensus       351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe  416 (418)
T KOG2982|consen  351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE  416 (418)
T ss_pred             ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence            34455567999999999999999999999998   56543    2334678999999999987754

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=80.92  E-value=6.8  Score=29.23  Aligned_cols=66  Identities=20%  Similarity=0.284  Sum_probs=51.5

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhhh---CCCCCCeEEE-ECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQS---GYPAHEIAIE-FQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e~---gIp~~~Q~Li-~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      +|+...+|..+...+--+.+.--+++   |-|++.=.|- -+|..|+-+ +.+++||+.+|-+++|..+..
T Consensus         4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~-kKveD~GftngvkLFLsLKAG   73 (76)
T PF10790_consen    4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVN-KKVEDFGFTNGVKLFLSLKAG   73 (76)
T ss_pred             CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeecc-chhhhccccccceEEEEeecc
Confidence            57888888888887776666554443   5788877776 578888665 899999999999999988754

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=80.61  E-value=11  Score=28.34  Aligned_cols=55  Identities=11%  Similarity=0.181  Sum_probs=40.2

Q ss_pred             EEEEEeCCC-ccHHHHHHHHHhhhC-C-C-CCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482         13 CFLLDVSED-LELENFKAFCEVQSG-Y-P-AHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus        13 ~~~leV~~~-~TV~dLK~~Ie~e~g-I-p-~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      ...++++++ .||.+|+..+....+ + . .....+..||+...+      +.-|++||.|.+..
T Consensus        17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~------~~~l~dgDevai~P   75 (80)
T TIGR01682        17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD------DALLNEGDEVAFIP   75 (80)
T ss_pred             eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC------CcCcCCCCEEEEeC
Confidence            357888877 899999999988763 1 1 123456678888764      34689999998864

The C-terminal Gly-Gly of this model is critical to function.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=80.29  E-value=4.3  Score=30.14  Aligned_cols=44  Identities=14%  Similarity=0.202  Sum_probs=34.4

Q ss_pred             EEEeCCCCeEEEEEeC-CCccHHHHHHHHHhhhCCCCCCeEEEEC
Q psy15482          4 TVSTQHTNECFLLDVS-EDLELENFKAFCEVQSGYPAHEIAIEFQ   47 (302)
Q Consensus         4 tV~~~~~g~~~~leV~-~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~   47 (302)
                      +||...+|..+.+.++ .+.|..+|+++|...++++.....|.|.
T Consensus         2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~   46 (81)
T cd05992           2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP   46 (81)
T ss_pred             cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence            3444346778888888 9999999999999999998755566553

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
3s8i_A	148	The Retroviral-Like Protease (Rvp) Domain Of Human		9e-28
2i1a_A	148	A Retroviral Protease-Like Domain In The Eukaryotic		2e-22
1v5o_A	102	Solution Structure Of The Ubiquitin-Like Domain Fro		5e-09

>pdb|3S8I|A Chain A, The Retroviral-Like Protease (Rvp) Domain Of Human Ddi1 Length = 148

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 52/71 (73%), Positives = 61/71 (85%)
Query: 207 PETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVG 266
           P   G V MLYINCKVNG+P+KAF+DSGAQ TIMS ACAER NIMRL+D RWAG+AKGVG
Sbjct: 16  PRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVG 75
Query: 267 VQKILGRIHMA 277
            Q+I+GR+H+A
Sbjct: 76  TQRIIGRVHLA 86

>pdb|2I1A|A Chain A, A Retroviral Protease-Like Domain In The Eukaryotic Protein Ddi1 Length = 148

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 63/88 (71%)
Query: 190 IKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVN 249
           +K+  I+  +  A+EY PE F  V MLYIN ++N YPVKAF+D+GAQTTIMS   A++  
Sbjct: 1   MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTG 60
Query: 250 IMRLLDTRWAGIAKGVGVQKILGRIHMA 277
           + R++D R+ G A+GVG  KI+GRIH A
Sbjct: 61  LSRMIDKRFIGEARGVGTGKIIGRIHQA 88

>pdb|1V5O|A Chain A, Solution Structure Of The Ubiquitin-Like Domain From Mouse Hypothetical 1700011n24rik Protein Length = 102

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 14 FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLL 71
          F L V+ D EL NF+  CE++SG PA E  I +   LL D+  +L ++G++DGD+V+L
Sbjct: 24 FSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVL 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	2e-34
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	1e-29
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	5e-22
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	2e-07
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	7e-07
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	1e-06
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	1e-06
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-06
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	3e-06
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-06
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	3e-06
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	4e-06
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	9e-06
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-05
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	2e-05
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	2e-05
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	3e-05
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	3e-05
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	3e-05
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	4e-05
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-05
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	4e-05
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	8e-05
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	8e-05
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	8e-05
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	8e-05
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	9e-05
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	1e-04
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	1e-04
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	2e-04
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	3e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	4e-04
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-04
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	5e-04
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	6e-04
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	9e-04

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Length = 148

 Score =  121 bits (305), Expect = 2e-34
 Identities = 46/95 (48%), Positives = 65/95 (68%)

Query: 190 IKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVN 249
           +K+  I+  +  A+EY PE F  V MLYIN ++N YPVKAF+D+GAQTTIMS   A++  
Sbjct: 1   MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTG 60

Query: 250 IMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNF 284
           + R++D R+ G A+GVG  KI+GRIH A  ++   
Sbjct: 61  LSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQ 95

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Length = 148

 Score =  109 bits (272), Expect = 1e-29
 Identities = 52/91 (57%), Positives = 66/91 (72%)

Query: 194 NIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRL 253
           +   +   +    P   G V MLYINCKVNG+P+KAF+DSGAQ TIMS ACAER NIMRL
Sbjct: 3   SSHHHHHHSSGLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRL 62

Query: 254 LDTRWAGIAKGVGVQKILGRIHMAIAELTNF 284
           +D RWAG+AKGVG Q+I+GR+H+A  ++   
Sbjct: 63  VDRRWAGVAKGVGTQRIIGRVHLAQIQIEGD 93

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 87.7 bits (217), Expect = 5e-22
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 1   MKVTVST---QHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKT 57
           M +TV       T   F L V+ D EL NF+  CE++SG PA E  I +   LL D+  +
Sbjct: 8   MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 58  LKTHGIQDGDLVLLKHLGSYHATPAAVIPNFDFSG 92
           L ++G++DGD+V+L    +         P+   SG
Sbjct: 68  LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSGPSSG 102

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          + +T       E   LD+     +   K            +I + + G +LQD+ KT+  
Sbjct: 2  VSLTFKN-FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDS-KTVSE 59

Query: 61 HGIQDGDLVLL 71
           G++DGD V+ 
Sbjct: 60 CGLKDGDQVVF 70

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M + +  +   + + ++V+ +  +  FK      +G P     + + G +L+D+ +T+++
Sbjct: 3  MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVES 61

Query: 61 HGIQDGD---LVL 70
          + IQDG    LV 
Sbjct: 62 YHIQDGHSVHLVK 74

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          + VTV     ++ F ++V     + + K    +    P   + + + G+ L D+ + L  
Sbjct: 16 IHVTVKFP--SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNE 73

Query: 61 HGIQDGDLVLL 71
          +GI +   +++
Sbjct: 74 YGITEFSEIVV 84

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M + +  +   + + ++V+ +  +  FK      +G P     + + G +L+D+ +T+++
Sbjct: 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVES 85

Query: 61 HGIQDGD---LVL 70
          + IQDG    LV 
Sbjct: 86 YHIQDGHSVHLVK 98

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          ++V+V T    +C    ++E+  +  FK          A  + + F G +L+D    L  
Sbjct: 18 IRVSVKT--PQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQ 74

Query: 61 HGIQDGDLVLLKHL 74
           GI DG  V   H+
Sbjct: 75 RGILDGSTV---HV 85

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           +KVTV T    +     V++   ++  K     +      ++ + F G +L+D   +L  
Sbjct: 18  IKVTVKT--PKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQ 74

Query: 61  HGIQDGD---LVL-LKHLGSYHATPAA 83
            G++DG    LV+  +H    +  PA+
Sbjct: 75  CGVRDGLTVHLVIKRQHRAMGNECPAS 101

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          MKVTV T    E     V E+  ++ FK     +      ++ + F G +L+D   TL  
Sbjct: 26 MKVTVKT--PKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQ-DTLSQ 82

Query: 61 HGIQDGD---LVL 70
          HGI DG    LV+
Sbjct: 83 HGIHDGLTVHLVI 95

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           +KVTV T    E     V E+  ++ FK     +      ++ + F G +L+D   TL  
Sbjct: 33  IKVTVKT--PKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQ 89

Query: 61  HGIQDGD---LVLLKHLGSYHATPAAVIPN 87
           HGI DG    LV+ +   S      A    
Sbjct: 90  HGIHDGLTVHLVIKRDPNSSSVDKYAAALE 119

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          +KVTV T    +     V++   ++  K     +      ++ + F G +L+D   +L  
Sbjct: 23 IKVTVKT--PKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQ 79

Query: 61 HGIQDGD---LVL 70
           G++DG    LV+
Sbjct: 80 CGVRDGLTVHLVI 92

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M + V T  T +   +D+    ++E  K   E + G P  +  + + G  + D  KT   
Sbjct: 13 MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAAD 70

Query: 61 HGIQDGD---LVL 70
          + I  G    LVL
Sbjct: 71 YKILGGSVLHLVL 83

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M++ V T       +L+V     +EN KA  + + G P  +  + F G  L+D  +TL  
Sbjct: 4  MRIVVKT-LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 61

Query: 61 HGIQDGD---LVL 70
          + I +     L+L
Sbjct: 62 YNIHNHSALYLLL 74

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M++TV          L V ED  +   K     +   P  +  + F+G  L D  K L  
Sbjct: 8  MQLTVKA-LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADG-KRLSD 65

Query: 61 HGIQDGD---LVL 70
          + I       LV+
Sbjct: 66 YSIGPNSKLNLVV 78

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          ++V V        +   ++ +  +   K   E Q G P  +  +EFQG +LQD    L  
Sbjct: 8  IQVFVKN-PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGI 65

Query: 61 HGIQDGD-LVLLKHLG 75
          +GIQD D L+L K  G
Sbjct: 66 YGIQDSDTLILSKKKG 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          +K+TV      +   L VS D  +++ K+  +  +        + F+G +L +   TLK 
Sbjct: 13 IKLTVK--FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVET-STLKQ 69

Query: 61 HGIQDGDLVLL 71
            +  G  ++L
Sbjct: 70 SDVGSGAKLML 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M++ V T  T +   L+V     +EN KA  + + G P  +  + F G  L+D  +TL  
Sbjct: 2  MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 59

Query: 61 HGIQDGD---LVL 70
          + IQ      LVL
Sbjct: 60 YNIQKESTLHLVL 72

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          +++ + T  T + F +++     +EN KA  + + G P  +  + F G  L+D  +TL  
Sbjct: 10 LQLFIKT-LTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 67

Query: 61 HGIQDGD---LVL 70
          + IQ      LVL
Sbjct: 68 YNIQKESTLHLVL 80

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M++ V T  T +   L+V     +EN KA  + + G P  +  + F G  L+D  +TL  
Sbjct: 4  MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 61

Query: 61 HGIQDGD---LVL 70
          + IQ      L+L
Sbjct: 62 YNIQKWSTLFLLL 74

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 1   MKVTVSTQHTNECFLLDV-SEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
           ++V+   ++  +   + V S    + + K     +   PA++  +  +   L+DN  +L 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDN-MSLA 88

Query: 60  THGIQDGDLVLL 71
            + +  G+++ L
Sbjct: 89  HYNVGAGEILTL 100

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG-VLLQDNKKTLK 59
          MK  V        F L+V     L   K   E     P  +  +   G V+L+++  T++
Sbjct: 11 MKFLVENL-NGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDL-TVE 68

Query: 60 THGIQDGDLVLL 71
             I     + L
Sbjct: 69 QCQIVPTSDIQL 80

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M + V T  T +   +D+    ++E  K   E + G P  +  + + G  + D  KT   
Sbjct: 1  MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAAD 58

Query: 61 HGIQDGD---LVL 70
          + I  G    LVL
Sbjct: 59 YKILGGSVLHLVL 71

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M++ V T  T +   L+V     +EN KA  + + G P  +  + F G  L+D  +TL  
Sbjct: 1  MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 58

Query: 61 HGIQDGD---LVL 70
          + IQ      LVL
Sbjct: 59 YNIQRESTLHLVL 71

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 1  MKVTVSTQHTNECF-LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
          M + V T   ++   + DVS    +E  +               + ++G  L++   TL 
Sbjct: 8  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLF 66

Query: 60 THGIQDGD---LVL 70
           + +   D   L++
Sbjct: 67 DYDVGLNDIIQLLV 80

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M++ V T  T +   L+V     +EN KA  + + G P  +  + F G  L+D  +TL  
Sbjct: 1  MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 58

Query: 61 HGIQDGD---LVL 70
          + IQ      LVL
Sbjct: 59 YNIQKESTLHLVL 71

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M + V T  T +   +D+    ++E  K   E + G P  +  + + G  + D  KT   
Sbjct: 1  MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAAD 58

Query: 61 HGIQDGD---LVL 70
          + I  G    LVL
Sbjct: 59 YKILGGSVLHLVL 71

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           M++ V T  T +   L+V     +EN KA  + + G P  +  + F G  L+D  +TL  
Sbjct: 36  MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 93

Query: 61  HGIQDGD---LVL 70
           + IQ      LVL
Sbjct: 94  YNIQKESTLHLVL 106

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           ++   T  T +   L+V     ++N K+  + + G P  +  + + G  L+D  +TL  
Sbjct: 10 FQIFAKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDG-RTLSD 67

Query: 61 HGIQDGD---LVL 70
          + IQ      LVL
Sbjct: 68 YNIQRESTLHLVL 80

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          + + V   +       +V     + + K       G       + F+G  L+D    L  
Sbjct: 5  LSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGE 62

Query: 61 HGIQDGD---LVL 70
          +G++      + L
Sbjct: 63 YGLKPLSTVFMNL 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M V V   +++  F ++V  D  +   K     Q G PA ++ + F G  L ++  T++ 
Sbjct: 1  MIVFVRF-NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNH-LTVQN 58

Query: 61 HGIQDGD---LVL 70
            ++      +V 
Sbjct: 59 CDLEQQSIVHIVQ 71

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 1  MKVTV---STQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKT 57
          + VTV   + +H         S +  +++     E   G P     + F+G  L++ +  
Sbjct: 8  LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 67

Query: 58 LKTHGIQDGDLVLLKHLGSYHATPAA 83
          L   GIQDG  V+L  +G  ++ P++
Sbjct: 68 LSALGIQDGCRVML--IGKKNSGPSS 91

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 7/73 (9%), Positives = 11/73 (15%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M  T +     +     V E   +       E                    +  K    
Sbjct: 1  MSDTEAP-VEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEV-KDASL 58

Query: 61 HGIQDGD---LVL 70
                     V 
Sbjct: 59 VDYVQVRQPIFVA 71

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          ++V V T   ++     V   + ++ FK         P+ +  + +QG +LQD+ K L+ 
Sbjct: 6  LEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQE 63

Query: 61 HGIQDGDLVLLKHLGSYHATPAA 83
          + +    + L++        P+ 
Sbjct: 64 YNVGGKVIHLVERAPPQTHLPSG 86

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 10  TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGD-- 67
             +  +  +    ++   K      +G PA +  ++++G+ ++D+  +L  + +  G   
Sbjct: 44  NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMASGAVI 102

Query: 68  -LVL 70
            L L
Sbjct: 103 HLAL 106

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 3  VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHG 62
          V +          + V  D      K      +G P     + ++G++ +D  KTL+   
Sbjct: 18 VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED--KTLREIK 75

Query: 63 IQDGDLVLLKHLGSYHATPAA 83
          +  G  +++  +GS  + P++
Sbjct: 76 VTSGAKIMV--VGSTISGPSS 94

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 49/331 (14%), Positives = 98/331 (29%), Gaps = 99/331 (29%)

Query: 7   TQHTNECFL-LDVS-EDLELENFKAFCEVQSGYPAHEIAIEFQG-------VLLQDNKKT 57
             + N+ F   +VS     L+  +A  E++   PA  + I   G        +  D    
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLI--DGVLGSGKTWVALD---V 170

Query: 58  LKTHGIQD--GDLVLLKHLGSYHATPAAVIPNF-DFSGIVVPSASSSSSNGQS----SNS 110
             ++ +Q      +   +L + + +P  V+         + P+ +S S +  +     +S
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 111 LSD-------DPATVRQLL-LDN---PKEIA--------LLQQNNPRLADALLNGSPEDF 151
           +                LL L N    K           LL     ++ D L   +    
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 152 ERILRQQ-YEERE-----------KREQLRLRMLNAHPFDTEAQKLIAEEIK-------- 191
                       E           + + L   +L  +P       +IAE I+        
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---RLSIIAESIRDGLATWDN 346

Query: 192 -----KNNIEANMEAAMEY-NPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACA 245
                 + +   +E+++    P  +     ++    V       F  S            
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRK---MFDRLSV-------FPPS------------ 384

Query: 246 ERVNI-MRLLDTRWAGIAKGVGVQKILGRIH 275
              +I   LL   W  + K   V  ++ ++H
Sbjct: 385 --AHIPTILLSLIWFDVIKSD-VMVVVNKLH 412

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          + + V           +V     + + K       G       + F+G  L+D    L  
Sbjct: 5  LSILVRNN-KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGE 62

Query: 61 HGIQDGD---LVL 70
          +G++      + L
Sbjct: 63 YGLKPLSTVFMNL 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	99.9
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	99.88
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.77
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.77
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.76
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.76
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.76
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.76
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.75
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.75
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.74
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.74
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.74
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.74
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.73
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.73
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.73
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.72
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.72
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.72
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.72
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.72
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.72
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.72
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.72
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.71
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.71
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.71
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.71
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.71
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.71
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.71
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.71
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.7
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.7
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.69
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.69
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.69
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.68
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.68
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.68
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.5
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.67
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.67
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.67
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.67
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.67
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.66
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.65
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.65
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.64
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.64
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.64
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.64
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.64
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.63
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.63
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.63
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.63
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.63
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.62
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.62
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.62
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.62
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.61
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.61
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.61
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.61
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.6
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.6
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.6
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.6
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.58
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.56
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.56
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.55
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.55
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.55
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.53
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.52
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.51
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.49
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.48
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.47
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.45
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.41
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.4
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.38
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.34
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.3
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.3
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.26
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.21
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.19
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.15
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.1
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.04
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	98.99
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.66
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.54
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.47
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.42
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.22
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.06
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.06
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.96
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.91
1fmb_A	104	EIAV protease; hydrolase (acid proteinase), RNA-di	97.84
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.71
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.69
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.65
3slz_A	132	GAG-Pro-POL polyprotein; beta sheet and dimer, pro	97.6
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.48
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.34
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.34
2hs1_A	99	HIV-1 protease; ultra-high resolution active site	97.21
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.14
3ec0_A	99	Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1	97.07
2hah_A	116	Protease, retropepsin; retroviral, aspartyl, hydro	96.97
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	96.88
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	96.43
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	96.43
3ka2_A	203	[L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydro	96.36
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	96.24
1pve_A	72	HHR23B, UV excision repair protein RAD23 homolog B	96.14
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	96.09
2f4m_B	61	UV excision repair protein RAD23 homolog B; glycop	95.94
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	95.83
3sqf_A	114	Protease; folded monomer, retropepsin, D-type retr	95.83
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	95.33
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	94.81
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	94.72
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	94.37
3liy_A	116	Protease; hydrolase, hydrolase-hydrolase inhibitor	94.32
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	94.28
3ka2_A	203	[L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydro	94.06
2rsp_A	124	RSV protease; hydrolase(aspartyl proteinase); 2.00	93.99
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	93.83
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	93.77
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	93.28
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	93.0
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	92.93
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	92.71
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	92.3
2jys_A	107	Protease/reverse transcriptase; retroviral proteas	91.38
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	90.96
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	90.47
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	88.4
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	87.42
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	87.11
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	85.89
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	85.87
1y8x_B	98	Ubiquitin-activating enzyme E1C; ubiquitin-conjuga	85.71
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	85.42
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	85.31
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	84.62
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	84.24
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	82.35
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	81.77
2hj1_A	97	Hypothetical protein; structural genomics, PSI, pr	80.38

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.4e-24  Score=181.29  Aligned_cols=97  Identities=47%  Similarity=0.793  Sum_probs=62.0

Q ss_pred             HHHhhHHHHHHHHHHhCCCCcceeeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcce
Q psy15482        190 IKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQK  269 (302)
Q Consensus       190 i~q~~i~~n~~~A~E~~PE~f~~v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~  269 (302)
                      |||++|+|||++|+|++||.|.+..++||+|+|||++++|+|||||+.++||.++|++|||....+.++.+.+.|+|..+
T Consensus         1 ~~~~~i~~~~~~a~e~~p~~~~~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~   80 (148)
T 2i1a_A            1 MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGK   80 (148)
T ss_dssp             ----------------------CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC----------
T ss_pred             CcHHHHHHHHHhhhhhCchhhcccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eeeEEEEeeeeeccccc
Q psy15482        270 ILGRIHMAIAELTNFNG  286 (302)
Q Consensus       270 i~G~i~~~~~~ig~~~~  286 (302)
                      +.|+++...++||++..
T Consensus        81 ~~~~~~~~~i~ig~~~~   97 (148)
T 2i1a_A           81 IIGRIHQAQVKIETQYI   97 (148)
T ss_dssp             -CEEEEEEEEEETTEEE
T ss_pred             cccEEEEEEEEECCEEe
Confidence            99999999999999874

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}

Probab=99.88  E-value=1.8e-23  Score=177.61  Aligned_cols=83  Identities=63%  Similarity=0.998  Sum_probs=69.5

Q ss_pred             HhCCCCcceeeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecc
Q psy15482        204 EYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN  283 (302)
Q Consensus       204 E~~PE~f~~v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~  283 (302)
                      -.-||+|+++.|+||+|+|||++++|||||||++|+||.+||+||||.+++|+||.|++.|+|+.++.|+||.++|+||+
T Consensus        13 ~~~~~~~~~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~   92 (148)
T 3s8i_A           13 GLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEG   92 (148)
T ss_dssp             ---------CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETT
T ss_pred             CcCceeccccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECC
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q psy15482        284 FNG  286 (302)
Q Consensus       284 ~~~  286 (302)
                      +++
T Consensus        93 ~~~   95 (148)
T 3s8i_A           93 DFL   95 (148)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=131.01  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus         5 m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~l~l~~rl   77 (79)
T 3phx_B            5 LSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLRL   77 (79)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEe-CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEec
Confidence            7999999 9999999999999999999999999999999999999999999996 99999999999999998764

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.77  E-value=1.2e-18  Score=134.17  Aligned_cols=72  Identities=21%  Similarity=0.216  Sum_probs=69.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCee-cCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVL-LQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~-L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|++ .+|+.++++|++++||++||++|+..+|+|+++|+|+|+|++ |+|+ +||++|||++|++|+|+.+
T Consensus        11 ~~i~vk~-l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~-~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A           11 MKFLVEN-LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRED-LTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             EEEEEEE-TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSS-SBHHHHTCCTTSCEEEEEC
T ss_pred             eEEEEEe-cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCc-CCHHHcCCCCCCEEEEEEc
Confidence            8999999 999999999999999999999999999999999999999999 9886 9999999999999999875

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.76  E-value=1.6e-18  Score=133.88  Aligned_cols=74  Identities=22%  Similarity=0.364  Sum_probs=70.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|+.++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+ +||++||| +|++|||+.+.++
T Consensus         6 m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~-~tL~~~~i-~g~~i~l~~~~~~   79 (90)
T 4dwf_A            6 LEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVERAPP   79 (90)
T ss_dssp             EEEEEEE-TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTC-TTEEEEEEECCCC
T ss_pred             EEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCC-CCHHHcCC-CCcEEEEEecCCC
Confidence            8999999 9999999999999999999999999999999999999999999996 99999999 8999999998654

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.76  E-value=1.3e-18  Score=136.54  Aligned_cols=71  Identities=18%  Similarity=0.264  Sum_probs=68.4

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|++ .+|++++++|+|++||.+||++|++++|+|+++|+|+|.|++|+|+ .||++|||++|++|+|..
T Consensus        22 IqI~Vk~-~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~-~TL~dY~I~dgstLhL~~   92 (93)
T 3plu_A           22 IEVVVND-RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDH-ISLEDYEVHDQTNLELYY   92 (93)
T ss_dssp             EEEEEEC-TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEE
T ss_pred             EEEEEEC-CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCc-CCHHHcCCCCCCEEEEEe
Confidence            6899999 9999999999999999999999999999999999999999999997 999999999999999853

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=4.6e-18  Score=133.30  Aligned_cols=75  Identities=21%  Similarity=0.393  Sum_probs=71.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhh---hCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQ---SGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e---~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..   +|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.+.
T Consensus         1 M~I~Vk~-~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~g~~i~l~~~~~~   78 (95)
T 1uel_A            1 MQVTLKT-LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDD-TALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEE-TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTT-SBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEe-CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCc-CcHHHCCCCCCCEEEEEEeCCC
Confidence            9999999 89999999999999999999999999   89999999999999999986 9999999999999999887654

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.3e-18  Score=139.45  Aligned_cols=75  Identities=23%  Similarity=0.301  Sum_probs=69.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|+.++|+|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.+.
T Consensus         2 m~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~~i~~g~~i~lv~~~~~   76 (106)
T 3m62_B            2 VSLTFKN-FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDS-KTVSECGLKDGDQVVFMVSQKK   76 (106)
T ss_dssp             -CEEEEC-TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTT-SBTTTTTCCTTCEEEEECCC--
T ss_pred             EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCc-CCHHHcCCCCCCEEEEEEcCCC
Confidence            8999999 9999999999999999999999999999999999999999999996 9999999999999999987654

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.75  E-value=3.7e-18  Score=132.03  Aligned_cols=74  Identities=23%  Similarity=0.295  Sum_probs=71.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+.+..
T Consensus         1 M~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~l~l~~rl~   74 (88)
T 4fbj_B            1 MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLALR   74 (88)
T ss_dssp             CEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTTTTTCCTTCEEEEECBCC
T ss_pred             CEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEECC
Confidence            9999999 9999999999999999999999999999999999999999999996 999999999999999998764

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.75  E-value=3.8e-18  Score=135.63  Aligned_cols=77  Identities=38%  Similarity=0.635  Sum_probs=69.7

Q ss_pred             CEEEEEeCCCC---eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTN---ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g---~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++...+   +.++++|++++||++||++|+.++|||+++|+|+|+|++|.|+.+||++|||++|++|+|+.+...
T Consensus         8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g   87 (102)
T 1v5o_A            8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV   87 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred             EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence            79999993233   799999999999999999999999999999999999999988657999999999999999887654

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.74  E-value=6.8e-18  Score=128.55  Aligned_cols=74  Identities=16%  Similarity=0.348  Sum_probs=69.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhh---hCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQ---SGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e---~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..   +|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.+
T Consensus         6 m~i~vk~-~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~i~l~~~~~   82 (85)
T 2wyq_A            6 VTITLKT-LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMVTKT   82 (85)
T ss_dssp             EEEEEEE-TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTT-SBGGGGCCCTTSEEEEEEC--
T ss_pred             EEEEEEE-CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCC-CCHHHcCCCCCCEEEEEEcCC
Confidence            7899999 88999999999999999999999998   89999999999999999986 999999999999999998764

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.74  E-value=1e-17  Score=124.08  Aligned_cols=73  Identities=23%  Similarity=0.300  Sum_probs=70.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+++.+.
T Consensus         1 M~i~vk~-~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~~   73 (76)
T 1ndd_A            1 MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLAL   73 (76)
T ss_dssp             CEEEEEC-TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence            9999999 8899999999999999999999999999999999999999999886 89999999999999998764

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=7.7e-18  Score=126.37  Aligned_cols=73  Identities=16%  Similarity=0.111  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCCeEE-EEE-eCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECF-LLD-VSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~-~le-V~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.+ +++ |++++||++||+.|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus         3 m~i~Vk~-~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~-~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            3 MWIQVRT-MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             EEEEEEE-TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEEE-CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEeC
Confidence            8999999 888874 999 9999999999999999999999999999999999986 99999999999999998874

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.74  E-value=6.9e-18  Score=130.91  Aligned_cols=73  Identities=29%  Similarity=0.331  Sum_probs=70.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus        18 m~i~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~rl   90 (91)
T 3v6c_B           18 MQIFVNT-LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL   90 (91)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-CBTGGGTCCTTCEEEEECCC
T ss_pred             EEEEEEe-CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCc-CcHHHCCCCCCCEEEEEEec
Confidence            8999999 8999999999999999999999999999999999999999999996 99999999999999998763

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.73  E-value=3.2e-18  Score=136.21  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|++ .+|+.++|+|++++||.+||++|+.++|+|+++|+|+|.|++|+|+ .||++|||++|++|+|+.
T Consensus        29 m~I~VKt-l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~-~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           29 IEVVCND-RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDH-VSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEEC-SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSS-CBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEEC-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEe
Confidence            7899999 8899999999999999999999999999999999999999999986 999999999999999964

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.73  E-value=2.1e-17  Score=122.45  Aligned_cols=73  Identities=29%  Similarity=0.333  Sum_probs=70.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+++.+.
T Consensus         1 M~i~vk~-~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~~   73 (76)
T 3a9j_A            1 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQRESTLHLVLRL   73 (76)
T ss_dssp             CEEEEEE-TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEc-CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence            9999999 8899999999999999999999999999999999999999999886 99999999999999998875

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.8e-18  Score=132.55  Aligned_cols=73  Identities=14%  Similarity=0.155  Sum_probs=68.3

Q ss_pred             CEEEEEeCCCCeEEEEEeC--CCccHHHHHHHH-HhhhCCCCCCeEEEECCeecCCCcccccccCC-CCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVS--EDLELENFKAFC-EVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGI-QDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~--~~~TV~dLK~~I-e~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI-~dgd~l~L~~~~   75 (302)
                      |+|+||+ .+|++++++|+  +++||.+||++| +...|+|+++|+|+|+||+|+|+ .||++||| ++|++|+|..++
T Consensus         2 mqI~VKt-l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~-~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKK-IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDN-LFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEE-CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTT-CBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEc-CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCc-CCHHHcCCCCCCCEEEEEcCC
Confidence            8999999 99998888755  999999999999 99999999999999999999996 99999999 699999998875

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.72  E-value=2.5e-17  Score=122.78  Aligned_cols=72  Identities=21%  Similarity=0.397  Sum_probs=67.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++  +|+.++++|++++||.+||..|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus         5 m~i~vk~--~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            5 LNIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEE--TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCC-CCHHHcCCCCCCEEEEEEcC
Confidence            6788887  788999999999999999999999999999999999999999986 99999999999999998764

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=128.16  Aligned_cols=71  Identities=23%  Similarity=0.389  Sum_probs=68.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+.++|+|+++|+|+|+|+.|+|+ .||++||| +|++|||+.|
T Consensus        18 m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i-~g~~i~lv~R   88 (88)
T 4eew_A           18 LEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVER   88 (88)
T ss_dssp             EEEEEEE-TTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTC-TTEEEEEEEC
T ss_pred             EEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCC-CcHHHcCC-CCcEEEEEEC
Confidence            7899999 8999999999999999999999999999999999999999999996 99999999 8999999864

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.72  E-value=2.5e-17  Score=128.45  Aligned_cols=75  Identities=28%  Similarity=0.310  Sum_probs=71.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ .||++|||++|++|+|+.+...
T Consensus         2 m~i~vk~-~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~i~l~~r~~g   76 (96)
T 3k9o_B            2 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRG   76 (96)
T ss_dssp             CEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECCCC
T ss_pred             cEEEEEe-CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEEcCC
Confidence            8999999 8999999999999999999999999999999999999999999986 8999999999999999987643

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.72  E-value=1.2e-17  Score=127.75  Aligned_cols=73  Identities=23%  Similarity=0.295  Sum_probs=70.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||++|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus        13 m~i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~i~l~~rl   85 (88)
T 3dbh_I           13 MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLRL   85 (88)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-SBGGGGTCCTTCEEEECCCC
T ss_pred             EEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence            7999999 8999999999999999999999999999999999999999999996 99999999999999998764

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.6e-17  Score=126.12  Aligned_cols=74  Identities=26%  Similarity=0.354  Sum_probs=71.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|++|+|+ +||++|||++|++|+|+.+..
T Consensus         4 m~i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~i~l~~rl~   77 (85)
T 3n3k_B            4 MRIVVKT-LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIHNHSALYLLLKLR   77 (85)
T ss_dssp             CEEEEEC-GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTT-CBTTTTTCCTTCEEEEEECCC
T ss_pred             EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCC-CCHHHCCCCCCCEEEEEEecc
Confidence            8999999 8899999999999999999999999999999999999999999986 899999999999999998864

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=2.6e-17  Score=127.25  Aligned_cols=73  Identities=25%  Similarity=0.341  Sum_probs=69.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus        10 ~~i~v~~-~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~r~   82 (88)
T 1sif_A           10 LQLFIKT-LTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL   82 (88)
T ss_dssp             CEEEEEE-TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBSGGGTCCTTCEEEEEC--
T ss_pred             eEEEEEe-CCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence            8999999 9999999999999999999999999999999999999999999986 99999999999999998775

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.72  E-value=6.5e-18  Score=135.65  Aligned_cols=76  Identities=18%  Similarity=0.198  Sum_probs=70.3

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCC---------------CCeEEEECCeecCCCcccccccCCCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA---------------HEIAIEFQGVLLQDNKKTLKTHGIQD   65 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~---------------~~Q~Li~~Gk~L~D~~~TL~~~gI~d   65 (302)
                      |+|+|++ ++|+.++|+|++++||++||+.|+.++|+|+               ++|+|+|+|++|.|+++||++|||++
T Consensus         8 M~I~Vk~-l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~   86 (105)
T 1v2y_A            8 MTVRVCK-MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN   86 (105)
T ss_dssp             EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred             EEEEEEe-cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence            8999999 9999999999999999999999999999988               45799999999976559999999999


Q ss_pred             CCEEEEEEecCC
Q psy15482         66 GDLVLLKHLGSY   77 (302)
Q Consensus        66 gd~l~L~~~~~~   77 (302)
                      |++||++.+...
T Consensus        87 g~~l~lv~~lr~   98 (105)
T 1v2y_A           87 RDEVSFIKKLGQ   98 (105)
T ss_dssp             SEEEEEEECSCS
T ss_pred             CCEEEEEehhcc
Confidence            999999988653

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=2.2e-17  Score=124.32  Aligned_cols=73  Identities=23%  Similarity=0.255  Sum_probs=69.4

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus         8 m~i~vk~-~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            8 MQLTVKA-LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADG-KRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             EEEEEEE-TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTT-SBGGGGTCCSSBCCEEECCC
T ss_pred             EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence            7899998 8899999999999999999999999999999999999999999886 89999999999999998764

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.71  E-value=3.7e-17  Score=157.24  Aligned_cols=74  Identities=16%  Similarity=0.348  Sum_probs=68.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHh---hhCCCCCCeEEEECCeecCCCcccccccCCCCCCEE-EEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEV---QSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLV-LLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~---e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l-~L~~~~~   76 (302)
                      |+|+||+ .+|++|+|+|++++||.+||.+|+.   ++|||+++|+|+|+||+|+|+ +||++|||++|++| +|+.+..
T Consensus         8 M~I~VKt-l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~-~tL~dygI~~gstIv~lv~k~~   85 (368)
T 1oqy_A            8 VTITLKT-LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMVTKTK   85 (368)
T ss_dssp             CCEEEEE-TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSS-SBTTTTCCCTTSCEEEEEECCC
T ss_pred             EEEEEEe-CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCc-CCHHHcCCCCCCEEEEEEecCC
Confidence            8999999 9999999999999999999999999   578999999999999999986 99999999999998 6666543

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.71  E-value=2e-17  Score=131.24  Aligned_cols=73  Identities=16%  Similarity=0.182  Sum_probs=67.9

Q ss_pred             CEEEEEeCCCCeEEEE--EeCCCccHHHHHHHH-HhhhCCCCCCeEEEECCeecCCCcccccccCC-CCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLL--DVSEDLELENFKAFC-EVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGI-QDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~l--eV~~~~TV~dLK~~I-e~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI-~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.|++  +|++++||.+||++| +...|+|+++|+|+|+|++|.|+ .||++||| ++|++|+|+.+.
T Consensus        20 m~I~VKt-l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~-~tL~dy~I~~~g~ti~lmvsk   96 (98)
T 4a20_A           20 VHLTLKK-IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDN-LFLSDLKVTPANSTITVMIKP   96 (98)
T ss_dssp             EEEEEEE-CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTT-CBGGGSCCBTTBCEEEEEECC
T ss_pred             EEEEEEc-CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCc-CCHHHcCcCCCCCEEEEEEeC
Confidence            7999999 89988776  667999999999999 88999999999999999999996 99999999 999999998875

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.71  E-value=1.4e-17  Score=125.47  Aligned_cols=73  Identities=21%  Similarity=0.322  Sum_probs=70.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+.+.|+|+++|+|+|+|++|.|+ +||++|||++||+|+|+.+.
T Consensus         4 m~i~vk~-~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~-~tl~~~~i~~~~~i~l~~~~   76 (79)
T 2uyz_B            4 IKLKVIG-QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQEQ   76 (79)
T ss_dssp             EEEEEEC-TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTEEEEEEECC
T ss_pred             EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCC-CCHHHcCCCCCCEEEEEEec
Confidence            7899999 8999999999999999999999999999999999999999999996 99999999999999998764

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3e-17  Score=124.48  Aligned_cols=74  Identities=28%  Similarity=0.333  Sum_probs=70.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+.++|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+..
T Consensus         4 m~i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~l~l~~r~~   77 (85)
T 3mtn_B            4 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKWSTLFLLLRLR   77 (85)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTGGGTCCTTCEEEEECCCC
T ss_pred             EEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEECc
Confidence            8999999 8999999999999999999999999999999999999999999986 999999999999999998764

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.9e-17  Score=129.43  Aligned_cols=73  Identities=26%  Similarity=0.330  Sum_probs=70.3

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus        23 m~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~i~l~~rl   95 (98)
T 4hcn_B           23 MQIFVKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL   95 (98)
T ss_dssp             CEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-CBSGGGTCCTTEEEEEECBC
T ss_pred             EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEec
Confidence            8999999 8999999999999999999999999999999999999999999986 99999999999999998775

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=128.58  Aligned_cols=74  Identities=15%  Similarity=0.172  Sum_probs=69.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+..
T Consensus         5 m~I~Vk~-~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~~I~~g~~i~l~~~~~   78 (88)
T 2hj8_A            5 LSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLRLR   78 (88)
T ss_dssp             EEEEEEE-TTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTT-SBHHHHHCSTTCEEEEEEC--
T ss_pred             EEEEEEC-CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEEcC
Confidence            7899999 8899999999999999999999999999999999999999999986 999999999999999988754

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3.5e-17  Score=125.24  Aligned_cols=74  Identities=28%  Similarity=0.390  Sum_probs=70.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+..
T Consensus         8 m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~-~tL~~~~i~~g~~i~l~~~~~   81 (87)
T 1wh3_A            8 IQVFVKN-PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIYGIQDSDTLILSKKKG   81 (87)
T ss_dssp             EEEEEEE-TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSS-SBHHHHTCCTTEEEEEEECSC
T ss_pred             EEEEEEc-CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCC-CCHHHCCCCCCCEEEEEEecc
Confidence            7999999 8899999999999999999999999999999999999999999986 999999999999999998764

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=5.5e-17  Score=124.78  Aligned_cols=74  Identities=18%  Similarity=0.150  Sum_probs=69.8

Q ss_pred             CEEEEEeCCCC-eEEEE-EeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTN-ECFLL-DVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g-~~~~l-eV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+| +.+++ +|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+..
T Consensus         8 m~i~Vk~-~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~~~   83 (89)
T 1wy8_A            8 MWIQVRT-IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLFDYDVGLNDIIQLLVRPD   83 (89)
T ss_dssp             EEEEEEE-TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSS-SBHHHHTCCTTCEEEEEECCC
T ss_pred             EEEEEEE-CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCC-CCHHHCCCCCCCEEEEEEeCC
Confidence            8999999 888 79999 59999999999999999999999999999999999986 999999999999999998764

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.70  E-value=4.5e-17  Score=127.81  Aligned_cols=74  Identities=18%  Similarity=0.296  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .++ +++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+++||++|||++|++|+|+.+..
T Consensus        16 ~~I~Vk~-~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~   89 (94)
T 2kan_A           16 IHVTVKF-PSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI   89 (94)
T ss_dssp             EEEEEEC-SSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred             EEEEEEc-CCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence            7899999 777 8999999999999999999999999999999999999998843899999999999999998764

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.70  E-value=1e-16  Score=125.88  Aligned_cols=74  Identities=28%  Similarity=0.332  Sum_probs=70.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||..|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+..
T Consensus         1 M~I~Vk~-~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~~~   74 (98)
T 1yx5_B            1 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR   74 (98)
T ss_dssp             CEEEEEE-TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECCC
T ss_pred             CEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEeCC
Confidence            9999999 8899999999999999999999999999999999999999999986 999999999999999988764

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=7e-17  Score=129.14  Aligned_cols=75  Identities=15%  Similarity=0.071  Sum_probs=71.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.+.
T Consensus        24 m~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~g~ti~lv~~~~~   98 (106)
T 1ttn_A           24 CQLRLRL-STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDK-MKFEELKIPKDYVVQVIVSQPV   98 (106)
T ss_dssp             EEEEEEE-TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTT-SHHHHCCCSSSCEEEEECCCSS
T ss_pred             EEEEEEc-CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeCCC
Confidence            7899999 8899999999999999999999999999999999999999999886 9999999999999999987643

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=126.99  Aligned_cols=73  Identities=33%  Similarity=0.393  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ . |+.++++|++++||.+||++|+..+|+|++.|+|+|+|+.|+|+ +||++|||++|++|+|+.+.+
T Consensus        26 m~I~Vk~-~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           26 MKVTVKT-P-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQ-DTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             EEEEEEC-S-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTT-CCTGGGTCCTTCEEEEEECCS
T ss_pred             EEEEEEe-C-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHcCCCCCCEEEEEEcCC
Confidence            7899999 6 88999999999999999999999999999999999999999986 999999999999999998764

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.69  E-value=5.1e-17  Score=127.95  Aligned_cols=73  Identities=21%  Similarity=0.322  Sum_probs=70.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||++|+.+.|||+++|+|+|+|+.|.|+ +||++|||++||+|+|+.+.
T Consensus        22 m~I~Vk~-~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~-~tl~dy~i~~g~~I~l~~~~   94 (97)
T 1wyw_B           22 IKLKVIG-QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQEQ   94 (97)
T ss_dssp             EEEEEEC-TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTCEEEEEESS
T ss_pred             EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCC-CCHHHCCCCCCCEEEEEEec
Confidence            7899999 8999999999999999999999999999999999999999999986 99999999999999998765

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=9e-17  Score=127.46  Aligned_cols=74  Identities=23%  Similarity=0.300  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|+ ++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+..+
T Consensus        23 m~I~Vk~-~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~r~~~   96 (100)
T 1yqb_A           23 IKVTVKT-PKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIKRQH   96 (100)
T ss_dssp             EEEEEEC-SSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEc-CCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHCCCCCCCEEEEEEcCCC
Confidence            7899999 7776 79999999999999999999999999999999999999986 9999999999999999988643

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1.7e-16  Score=126.73  Aligned_cols=74  Identities=23%  Similarity=0.300  Sum_probs=69.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+++ +.++|++++||.+||++|+..+|||+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+...
T Consensus        18 m~I~Vk~-~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~~~~   91 (106)
T 1wx7_A           18 IKVTVKT-PKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIKRQH   91 (106)
T ss_dssp             EEEEEEC-SSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTT-SCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEe-CCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHcCCCCCCEEEEEEcCCC
Confidence            7899999 7776 79999999999999999999999999999999999999986 9999999999999999987654

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1e-16  Score=124.86  Aligned_cols=74  Identities=14%  Similarity=0.127  Sum_probs=68.5

Q ss_pred             CEEEEEeCCCCe--EEEEEeCCCccHHHHHHHHHhhh--CCCCCCeEEEECCeecCCCccccccc--CCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNE--CFLLDVSEDLELENFKAFCEVQS--GYPAHEIAIEFQGVLLQDNKKTLKTH--GIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~--~~~leV~~~~TV~dLK~~Ie~e~--gIp~~~Q~Li~~Gk~L~D~~~TL~~~--gI~dgd~l~L~~~   74 (302)
                      |+|+|++ .++.  .++|+|++++||.+||++|+.++  |+|+++|+|+|+|++|+|+ +||++|  ||++|++|||+.+
T Consensus         8 m~i~Vk~-~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~-~tL~~~~~~i~~~~~i~lv~~   85 (93)
T 1wgd_A            8 VTLLVKS-PNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDH-QCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CEEEEEC-SSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSS-SCHHHHSCSSSCSEEEEEECC
T ss_pred             EEEEEEe-CCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCc-CCHHHHhcCCCCCCEEEEEeC
Confidence            7999999 7777  67788889999999999999999  9999999999999999986 899999  9999999999877


Q ss_pred             cC
Q psy15482         75 GS   76 (302)
Q Consensus        75 ~~   76 (302)
                      ..
T Consensus        86 ~~   87 (93)
T 1wgd_A           86 VK   87 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.50  E-value=2.8e-18  Score=128.07  Aligned_cols=73  Identities=22%  Similarity=0.341  Sum_probs=69.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus         1 M~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~rl   73 (76)
T 3b1l_X            1 MIVFVRF-NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNH-LTVQNCDLEQQSIVHIVQRP   73 (76)
Confidence            9999999 8899999999999999999999999999999999999999999986 99999999999999998764

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=5.3e-17  Score=126.96  Aligned_cols=74  Identities=24%  Similarity=0.380  Sum_probs=69.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ . |+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+...
T Consensus        18 m~i~Vk~-~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~~~~   91 (96)
T 1wx8_A           18 IRVSVKT-P-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQRGILDGSTVHVVVRSHS   91 (96)
T ss_dssp             EEEEEEC-S-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTT-SCHHHHTCCTTEEEECCBCCSS
T ss_pred             EEEEEEE-C-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCc-CCHHHCCCCCCCEEEEEEeCCC
Confidence            7899999 6 89999999999999999999999999999999999999999886 9999999999999999887643

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=2.8e-16  Score=122.71  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=68.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|+.+.++|++++||.+||++|+..+   +++|+|+|+|+.|.|+++||++|||++|++|||+.+.+.
T Consensus         8 m~i~Vk~-~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            8 INVRLKF-LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             EEEEEEE-TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence            7899999 899999999999999999999999988   899999999999988548999999999999999987654

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1.9e-16  Score=123.00  Aligned_cols=75  Identities=28%  Similarity=0.344  Sum_probs=68.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCC-----ccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSED-----LELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~-----~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|+.  .++.++++|+++     +||.+||++|+..+|+|+++|+|+|+|+.|.|++.+|++|||++|++|+|+.+.
T Consensus         8 ~~v~Vk~--~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~   85 (92)
T 1wxv_A            8 LTVTVTH--SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   85 (92)
T ss_dssp             EEEEEEC--SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             EEEEEEE--CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence            6788887  478899999996     999999999999999999999999999999985479999999999999998776


Q ss_pred             CC
Q psy15482         76 SY   77 (302)
Q Consensus        76 ~~   77 (302)
                      ..
T Consensus        86 ~~   87 (92)
T 1wxv_A           86 NS   87 (92)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.67  E-value=2.1e-16  Score=127.51  Aligned_cols=73  Identities=29%  Similarity=0.337  Sum_probs=70.3

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus        36 m~I~Vk~-~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~gI~~gs~I~l~~rl  108 (111)
T 3vdz_A           36 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL  108 (111)
T ss_dssp             EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEEe-CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEec
Confidence            7999999 8999999999999999999999999999999999999999999996 89999999999999999875

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1.3e-16  Score=126.89  Aligned_cols=72  Identities=18%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             EEEEeCCC----CeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          3 VTVSTQHT----NECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         3 ItV~~~~~----g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |.|++ .+    ++.++|+|++++||.+||++|+.++|+|+++|+|||+||+|+|+ +||++|||++|++|+++....
T Consensus        18 i~V~~-~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~-~TL~~y~I~~gsti~vl~lrg   93 (100)
T 1wju_A           18 IEVFL-PPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLG-KTLEEQGVAHNVKAMVLELKQ   93 (100)
T ss_dssp             EEEEC-CTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTT-SBHHHHTCCSSEEEEEECCCC
T ss_pred             EEEEe-cCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCC-CcHHHcCCCCCCEEEEEEECC
Confidence            55666 33    78899999999999999999999999999999999999999996 999999999999997765543

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.66  E-value=2.3e-16  Score=123.30  Aligned_cols=71  Identities=18%  Similarity=0.246  Sum_probs=67.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++   |+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+ +||++|||++|++|+|+.+.
T Consensus        20 m~I~Vk~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~y~I~~gstI~lv~rl   90 (93)
T 2l7r_A           20 MQLFVRA---QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDE-ATLGQCGVEALTTLEVAGRM   90 (93)
T ss_dssp             CEEEEES---SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTT-SBHHHHTCCSSCEEEEECCC
T ss_pred             EEEEEEC---CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEec
Confidence            8899998   78999999999999999999999999999999999999999986 99999999999999998764

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.65  E-value=2.8e-16  Score=122.08  Aligned_cols=73  Identities=12%  Similarity=0.204  Sum_probs=68.4

Q ss_pred             CEEEEEeCCCCeEEEE-EeCCCccHHHHHHHHHhhhCCCCCCeEEE---ECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLL-DVSEDLELENFKAFCEVQSGYPAHEIAIE---FQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~l-eV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li---~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|+.  .|+.|+| +|+++.||.+||+.|+..+|||+++|+|+   |+|++|+|+ .+|++|||++|++|+|+....
T Consensus         8 m~i~Vk~--~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~-~~L~~~~i~~g~~l~l~~~~~   84 (90)
T 1v5t_A            8 LPIIVKW--GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND-VKLGALKLKPNTKIMMMGTRE   84 (90)
T ss_dssp             CCEEEEE--TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTT-SBHHHHTCCTTEEEEEECCCS
T ss_pred             EEEEEEE--CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCC-CCHHHcCCCCCCEEEEEecCc
Confidence            7899987  6899999 99999999999999999999999999999   999999986 899999999999999987653

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.65  E-value=7.2e-16  Score=133.32  Aligned_cols=75  Identities=25%  Similarity=0.303  Sum_probs=71.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+ +||++|||++|++|||+.+...
T Consensus         1 MqI~Vk~-~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~y~I~~gstI~Lvlrl~G   75 (169)
T 3l0w_B            1 MQIFVKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRG   75 (169)
T ss_dssp             CEEEEEE-TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTT-SBGGGGTCCTTCEEEEEECCCC
T ss_pred             CEEEEEe-CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCc-CcHHHcCCCCCCEEEEEEEecc
Confidence            9999999 9999999999999999999999999999999999999999999986 9999999999999999987643

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.64  E-value=6.1e-16  Score=126.23  Aligned_cols=75  Identities=12%  Similarity=0.108  Sum_probs=67.4

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHh------hhCC--CCCCeEEEECCeecCCCcccccccCCCCC--CEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEV------QSGY--PAHEIAIEFQGVLLQDNKKTLKTHGIQDG--DLVL   70 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~------e~gI--p~~~Q~Li~~Gk~L~D~~~TL~~~gI~dg--d~l~   70 (302)
                      |+|+|++ .+|++++|+|++++||.+||++|+.      ++|+  |+++|+|||.||+|+|+ +||++|+|+.+  .+||
T Consensus        17 m~I~vKt-l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~-~TL~~y~I~~~~~~tlh   94 (116)
T 1wgh_A           17 INLRLIL-VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMH   94 (116)
T ss_dssp             EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSS-CBTTTTTCCSSCEEEEE
T ss_pred             EEEEEEe-CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCC-CcHHHcCCCCCCceEEE
Confidence            7899999 9999999999999999999999999      5575  69999999999999997 99999999877  4688


Q ss_pred             EEEecCC
Q psy15482         71 LKHLGSY   77 (302)
Q Consensus        71 L~~~~~~   77 (302)
                      |+.+...
T Consensus        95 Lvlr~~~  101 (116)
T 1wgh_A           95 LVARETL  101 (116)
T ss_dssp             EEECSSC
T ss_pred             EEccCCC
Confidence            8887653

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.64  E-value=5.5e-16  Score=124.21  Aligned_cols=75  Identities=21%  Similarity=0.247  Sum_probs=68.2

Q ss_pred             CEEEEEeCCCC---eEEEEEeC--------C-CccHHHHHHHHHhhh--CCCCCC-eEEEECCeecCCCcccccccCCCC
Q psy15482          1 MKVTVSTQHTN---ECFLLDVS--------E-DLELENFKAFCEVQS--GYPAHE-IAIEFQGVLLQDNKKTLKTHGIQD   65 (302)
Q Consensus         1 MqItV~~~~~g---~~~~leV~--------~-~~TV~dLK~~Ie~e~--gIp~~~-Q~Li~~Gk~L~D~~~TL~~~gI~d   65 (302)
                      |+|+|++ .++   ..++|+|+        + ++||.+||++|+..+  |+|+++ |+|+|+|+.|+|+ +||++|||++
T Consensus        13 ~~i~Vk~-~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~-~tL~~y~i~~   90 (107)
T 1x1m_A           13 WHLAVKL-ADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDD-QTLDFYGIQP   90 (107)
T ss_dssp             CCEEEEE-TTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTT-CBHHHHTCCT
T ss_pred             eEEEEEe-CCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCC-CcHHHcCCCC
Confidence            7899999 778   89999955        4 599999999999999  999999 9999999999986 9999999999


Q ss_pred             CCEEEEEEecCC
Q psy15482         66 GDLVLLKHLGSY   77 (302)
Q Consensus        66 gd~l~L~~~~~~   77 (302)
                      |++|||+.+.++
T Consensus        91 g~~i~lv~~~~~  102 (107)
T 1x1m_A           91 GSTVHVLRKSWS  102 (107)
T ss_dssp             TCEEEEEESSCC
T ss_pred             CCEEEEEeCCCC
Confidence            999999987643

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=5.3e-16  Score=127.95  Aligned_cols=74  Identities=31%  Similarity=0.368  Sum_probs=68.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ . |+.++++|++++||.+||.+|+..+|||+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+...
T Consensus        33 m~I~Vk~-~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~dygI~~gstI~lv~~~~g  106 (125)
T 1j8c_A           33 IKVTVKT-P-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQHGIHDGLTVHLVIKRDP  106 (125)
T ss_dssp             EEEEEEC-S-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTT-SCGGGTTCSSSEEEEEEEC---
T ss_pred             EEEEEEe-C-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeccCC
Confidence            7899999 6 88999999999999999999999999999999999999999986 9999999999999999987643

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.64  E-value=3.6e-16  Score=127.83  Aligned_cols=72  Identities=24%  Similarity=0.207  Sum_probs=66.2

Q ss_pred             CEEEEEeCCCC-eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCC-------CCCEEEEE
Q psy15482          1 MKVTVSTQHTN-ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQ-------DGDLVLLK   72 (302)
Q Consensus         1 MqItV~~~~~g-~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~-------dgd~l~L~   72 (302)
                      |+++|+. ..+ .+++|+|++++||.+||++|+.++|||+++|+|+|+||+|+|+ +||++|||+       ++++|+|+
T Consensus         1 M~mfl~i-r~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~-~TLsdy~I~~~~a~~q~~stL~L~   78 (118)
T 2fnj_B            1 MDVFLMI-RRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLA   78 (118)
T ss_dssp             CEEEEEE-EEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred             CcEEEEE-ecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCC-CCHHHcCcccccccCCCCCEEEEE
Confidence            7777777 444 5689999999999999999999999999999999999999986 999999999       79999999


Q ss_pred             Ee
Q psy15482         73 HL   74 (302)
Q Consensus        73 ~~   74 (302)
                      .+
T Consensus        79 lr   80 (118)
T 2fnj_B           79 FR   80 (118)
T ss_dssp             EB
T ss_pred             ec
Confidence            88

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.64  E-value=9.8e-16  Score=123.41  Aligned_cols=73  Identities=29%  Similarity=0.337  Sum_probs=69.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||++|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus        36 m~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gI~~gs~I~l~~rl  108 (111)
T 2ojr_A           36 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL  108 (111)
T ss_dssp             EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSS-CBTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEEc-CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence            7899999 8899999999999999999999999999999999999999999886 99999999999999998875

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=7.3e-16  Score=125.45  Aligned_cols=74  Identities=22%  Similarity=0.368  Sum_probs=67.4

Q ss_pred             EEEE--eCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          3 VTVS--TQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         3 ItV~--~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      +||+  ....++.++++++++.||.+||+.++.++++|++.|+|+|+||+|+|+ .||++|||++|.+|||+.+...
T Consensus        16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~-eTL~~~gIk~g~TIhLvi~s~~   91 (118)
T 2daf_A           16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNN-ETLVQHGVKPQEIVQVEIFSTN   91 (118)
T ss_dssp             EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSS-CCHHHHSCCSSCEEEEEEEESC
T ss_pred             EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCc-chHHHcCCCCCCEEEEEEecCC
Confidence            4555  325788999999999999999999999999999999999999999997 8999999999999999998754

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.63  E-value=6.3e-16  Score=126.20  Aligned_cols=74  Identities=23%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCC-------CCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQD-------GDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~d-------gd~l~L~~   73 (302)
                      |-++|+......++.++|++++||.+||++|+..+|||+++|+|+|+|++|+|+ +||++|||++       +++|+|+.
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~-kTL~dy~I~~~ta~~q~~atl~Lvl   79 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCc-CCHHHcCCCcCcccCCCCCEEEEEE
Confidence            788888855566889999999999999999999999999999999999999996 9999999999       99999998


Q ss_pred             ec
Q psy15482         74 LG   75 (302)
Q Consensus        74 ~~   75 (302)
                      +.
T Consensus        80 r~   81 (118)
T 4ajy_B           80 RA   81 (118)
T ss_dssp             CC
T ss_pred             ec
Confidence            86

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.63  E-value=8.9e-16  Score=130.09  Aligned_cols=74  Identities=15%  Similarity=0.172  Sum_probs=70.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+.+..
T Consensus        82 m~i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~y~i~~g~~l~l~~rl~  155 (159)
T 3rt3_B           82 LSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLRLR  155 (159)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEECCC
T ss_pred             EEEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCC-CCHHHcCCCCCCEEEEEEecC
Confidence            7899999 8999999999999999999999999999999999999999999996 999999999999999998753

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.3e-16  Score=126.80  Aligned_cols=71  Identities=21%  Similarity=0.389  Sum_probs=65.0

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +|+|++  +|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus        30 ~I~Vk~--~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~gI~~g~tI~lv~~~  100 (101)
T 3m63_B           30 NIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKSQ  100 (101)
T ss_dssp             CEEEEC--SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTT-SBTTTTTCCTTEEEEECCCC
T ss_pred             EEEEEE--CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCc-CcHHHCCCCCCCEEEEEeCC
Confidence            455554  788999999999999999999999999999999999999999996 99999999999999998653

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.63  E-value=3.6e-16  Score=124.13  Aligned_cols=70  Identities=14%  Similarity=0.198  Sum_probs=63.5

Q ss_pred             CEEEEEeCCCCe--EEEEEeCCCccHHHHHHHHHhh-hCCC-CCCeEEEECCeecCCCccccccc--CCCCCCEEEEE
Q psy15482          1 MKVTVSTQHTNE--CFLLDVSEDLELENFKAFCEVQ-SGYP-AHEIAIEFQGVLLQDNKKTLKTH--GIQDGDLVLLK   72 (302)
Q Consensus         1 MqItV~~~~~g~--~~~leV~~~~TV~dLK~~Ie~e-~gIp-~~~Q~Li~~Gk~L~D~~~TL~~~--gI~dgd~l~L~   72 (302)
                      |+|+|++ .+++  .++|+|++++||.+||++|+.+ .|+| +++|||+|+||+|+|+ +||++|  ||++|++|+|+
T Consensus        24 m~I~VK~-~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~-~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           24 VTLIIKA-PNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDH-LQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             EEEEEEC-TTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTT-SBTHHHHTTTCSEEEEEEC
T ss_pred             EEEEEEc-CCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCC-CCHHHHhcCCCCCCEEEeC
Confidence            7899999 7777  6799999999999999999986 5666 5999999999999986 999999  99999999984

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.7e-15  Score=122.81  Aligned_cols=74  Identities=22%  Similarity=0.279  Sum_probs=70.3

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      .+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+..
T Consensus        10 ~~i~vk~-l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~~~~   83 (114)
T 2kdi_A           10 FQIFAKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDG-RTLSDYNIQRESTLHLVLRLR   83 (114)
T ss_dssp             CEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCSSCEEEEEECCC
T ss_pred             EEEEEEe-CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEEcC
Confidence            3799999 9999999999999999999999999999999999999999999986 999999999999999998764

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.62  E-value=7.2e-16  Score=127.36  Aligned_cols=74  Identities=12%  Similarity=0.102  Sum_probs=67.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHh------hhCCC--CCCeEEEECCeecCCCcccccccCCCCCC--EEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEV------QSGYP--AHEIAIEFQGVLLQDNKKTLKTHGIQDGD--LVL   70 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~------e~gIp--~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd--~l~   70 (302)
                      |+|+|++ .+|++++++|++++||.+||++|+.      ++|+|  +++|+|||+||+|+|+ +||++|+|++|+  +||
T Consensus        18 m~I~vkt-l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~-~TL~~y~I~~~~~~tlh   95 (125)
T 2gow_A           18 INLRLIL-VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMH   95 (125)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESS-CBTGGGCCCTTSEEEEE
T ss_pred             EEEEEEe-CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCC-CcHHHcCCCCCCceEEE
Confidence            6788998 8899999999999999999999999      67884  8999999999999996 999999999887  678


Q ss_pred             EEEecC
Q psy15482         71 LKHLGS   76 (302)
Q Consensus        71 L~~~~~   76 (302)
                      |+.+..
T Consensus        96 lv~r~~  101 (125)
T 2gow_A           96 LVARET  101 (125)
T ss_dssp             EEECSC
T ss_pred             EEecCC
Confidence            887764

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=1.5e-15  Score=119.67  Aligned_cols=72  Identities=22%  Similarity=0.213  Sum_probs=66.6

Q ss_pred             CEEEEEeCCCCeEE-EEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECF-LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~-~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|+.  .|+.| +|+|+++.||.+||+.|+..+|||+++|+|+|+|++|+|+  +|++|||++|++|+|+.+..
T Consensus         8 m~i~Vk~--~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~--tL~~~~I~~g~~i~l~~~~~   80 (96)
T 1wgg_A            8 YSVTVKW--GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             EEEEEEE--TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS--CCCSCCCCSSCEEECCCCCC
T ss_pred             EEEEEEE--CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC--CHHHCCCCCCCEEEEEecch
Confidence            6788886  68999 6999999999999999999999999999999999999884  99999999999999987654

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.62  E-value=1.7e-15  Score=116.45  Aligned_cols=69  Identities=19%  Similarity=0.259  Sum_probs=64.0

Q ss_pred             EEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          4 TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         4 tV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +++. .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+ +||++|||++|++|+|+.+
T Consensus        15 ~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           15 LTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVET-STLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTT-CBTTTTTCCTTEEEEEECC
T ss_pred             EEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCc-CCHHHCCCCCCCEEEEEEe
Confidence            3444 6899999999999999999999999999999999999999999886 9999999999999999764

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.61  E-value=1.7e-15  Score=128.32  Aligned_cols=73  Identities=26%  Similarity=0.340  Sum_probs=70.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE-E-CCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE-F-QGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li-~-~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+ | +|+.|+|+ .||++|||++|++|+|+.+.
T Consensus         3 m~i~vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~-~tL~~y~i~~~~~l~l~~~~   77 (159)
T 3rt3_B            3 WDLTVKM-LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDR-VPLASQGLGPGSTVLLVVDK   77 (159)
T ss_dssp             CEEEEEE-TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTT-SCGGGGTCCTTCEEEEEECC
T ss_pred             eEEEEEE-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCC-CCHHHcCCCCCCEEEEEccC
Confidence            8999999 9999999999999999999999999999999999999 9 89999886 99999999999999999873

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.61  E-value=2.6e-15  Score=120.44  Aligned_cols=75  Identities=25%  Similarity=0.392  Sum_probs=67.5

Q ss_pred             CEEEEEeCC-CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCC-CCCCEEEEEEecC
Q psy15482          1 MKVTVSTQH-TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGI-QDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~-~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI-~dgd~l~L~~~~~   76 (302)
                      |+|||++.. .+..++|+|+|++||.+||++|+.++|||+++|||+|+|+.++|+ +||++||| ++|+++||....+
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~-~TL~~ygI~~~G~t~hL~l~~~  101 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQ-ETLHSHGVRQNGDSAYLYLLSA  101 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTT-CBTGGGTCCSTTCEEEEEECCC
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCc-CcHHHcCCCCCCCEEEEEEEec
Confidence            689999832 258899999999999999999999999999999999999988886 99999999 5999999987653

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.61  E-value=9e-16  Score=123.52  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             CEEEEEeCC---CCeEEEEEeCC-CccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQH---TNECFLLDVSE-DLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~---~g~~~~leV~~-~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .   +|+.++++|++ ++||.+||++|+..+|||+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+..
T Consensus        28 i~i~Vk~-~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~-~tL~~y~I~~g~~l~l~~r~~  105 (111)
T 1we6_A           28 ATIRVSK-PNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDN-MSLAHYNVGAGEILTLSLRER  105 (111)
T ss_dssp             EEEEECC-TTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTT-SBTTTTTCSSSCEEEEECSSC
T ss_pred             EEEEEEe-cccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCC-CcHHHCCCCCCCEEEEEEEcC
Confidence            6899998 5   78999999998 9999999999999999999999999999999986 999999999999999987753

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.61  E-value=7.6e-16  Score=120.91  Aligned_cols=72  Identities=14%  Similarity=0.208  Sum_probs=65.3

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|+.  .++.++|+|++++||.+||++|+..+|||+++|+|+|+|++| |+ .+|++|||++|++|+|+.+..
T Consensus        18 ~~i~Vk~--~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd-~tL~~~~i~~g~~i~lv~~~~   89 (95)
T 1v86_A           18 VDLKIIW--NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-ED-KTLREIKVTSGAKIMVVGSTI   89 (95)
T ss_dssp             EEEEEEE--TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SS-SBHHHHCCCTTEEEEECCSSC
T ss_pred             EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-Cc-CcHHHCCCCCCCEEEEEeccc
Confidence            5677765  689999999999999999999999999999999999999999 55 599999999999999987653

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.60  E-value=3e-15  Score=128.76  Aligned_cols=74  Identities=28%  Similarity=0.332  Sum_probs=70.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|++++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+.+..
T Consensus        21 m~i~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~-~tL~~~~i~~~~~l~l~~~~~   94 (172)
T 3u30_A           21 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR   94 (172)
T ss_dssp             EEEEEEE-TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTGGGTCCTTCEEEEEECCC
T ss_pred             EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccccc-CCHhHcCCcccceeeeeeccc
Confidence            8999999 9999999999999999999999999999999999999999999996 999999999999999998753

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.60  E-value=3.6e-15  Score=124.35  Aligned_cols=74  Identities=28%  Similarity=0.332  Sum_probs=70.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|+.|.|+ .||++|||++|++|+|+.+..
T Consensus         1 M~i~vk~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~l~l~~~~~   74 (152)
T 3b08_A            1 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR   74 (152)
T ss_dssp             CEEEEEE-TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECCT
T ss_pred             CEEEEEe-CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCc-ccHHHhccCCCCeeEEEeecc
Confidence            9999999 8899999999999999999999999999999999999999999886 999999999999999998753

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.60  E-value=6.4e-17  Score=133.61  Aligned_cols=74  Identities=26%  Similarity=0.325  Sum_probs=0.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|++++++|++++||.+||+.|+..+|||+++|+|+|+|++|+|+ .||++|||++|++|+|+.+..
T Consensus         1 M~I~Vk~-~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~~I~~gsti~l~~rl~   74 (128)
T 3u5e_m            1 MQIFVKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR   74 (128)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEe-CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCC-CchhhhccCCCCEEEEEEEcC
Confidence            8999999 8999999999999999999999999999999999999999999986 999999999999999988764

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.60  E-value=1.5e-15  Score=133.64  Aligned_cols=74  Identities=27%  Similarity=0.297  Sum_probs=70.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|++++|+|++++||.+||++|+..+|+|+++|+|+|+|++|+|+ .||++|||++|++|+|+.+..
T Consensus       106 MqI~VKt-l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~-~tL~dygI~~gstI~Lvlrlr  179 (189)
T 3q3f_A          106 GQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR  179 (189)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-CBGGGGTCCTTCEEEECCCCC
T ss_pred             eeeeeec-CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCC-CCHHHCCCCCCCEEEEEEEcC
Confidence            8999999 9999999999999999999999999999999999999999999996 999999999999999987753

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.58  E-value=4e-15  Score=122.91  Aligned_cols=74  Identities=11%  Similarity=0.123  Sum_probs=66.4

Q ss_pred             CEEEEEeCCCCeEE-EEEeCCCccHHHHHHHH-----HhhhCCCC--CCeEEEECCeecCCCcccccccCCCCC------
Q psy15482          1 MKVTVSTQHTNECF-LLDVSEDLELENFKAFC-----EVQSGYPA--HEIAIEFQGVLLQDNKKTLKTHGIQDG------   66 (302)
Q Consensus         1 MqItV~~~~~g~~~-~leV~~~~TV~dLK~~I-----e~e~gIp~--~~Q~Li~~Gk~L~D~~~TL~~~gI~dg------   66 (302)
                      |+|+|++ .+|..+ ++++++++||.+||++|     +..+|+|+  ++|+|||+||+|+|+ +||++|+|++|      
T Consensus        17 ~~i~~kt-~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~-~TLsdy~I~~~~~~~~v   94 (126)
T 1se9_A           17 LEIKFRL-TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENS-KTVKDYRSPVSNLAGAV   94 (126)
T ss_dssp             EEEEEEE-TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTT-SBGGGGSCCTTSCTTCC
T ss_pred             EEEEEEE-CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCC-CcHHHcCCCcCCccCCc
Confidence            7899999 999777 79999999999999999     45678997  899999999999996 99999999999      


Q ss_pred             CEEEEEEecC
Q psy15482         67 DLVLLKHLGS   76 (302)
Q Consensus        67 d~l~L~~~~~   76 (302)
                      .++||+.+..
T Consensus        95 ~tmhlVlrl~  104 (126)
T 1se9_A           95 TTMHVIIQAP  104 (126)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEeccC
Confidence            5788887754

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.56  E-value=1.4e-14  Score=120.84  Aligned_cols=73  Identities=29%  Similarity=0.337  Sum_probs=69.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||..|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus        77 ~~i~Vk~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r~  149 (152)
T 3b08_A           77 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL  149 (152)
T ss_dssp             EEEEEEE-SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECC
T ss_pred             cceeeee-cCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEec
Confidence            6899999 8999999999999999999999999999999999999999999986 99999999999999998875

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.56  E-value=1e-14  Score=118.15  Aligned_cols=74  Identities=14%  Similarity=0.319  Sum_probs=67.5

Q ss_pred             EEEEEeCC---------CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          2 KVTVSTQH---------TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         2 qItV~~~~---------~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      +|+|+.+.         +|+.++++|++++||.+||++|+..+|||+++|+|+|+|+.|.|+ .||++|||++|++|+|+
T Consensus        27 ~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~-~tL~~y~i~~g~~i~lv  105 (115)
T 1we7_A           27 SIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMASGAVIHLA  105 (115)
T ss_dssp             EEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTT-SBHHHHTCCSSCEEEEE
T ss_pred             EEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCC-CCHHHCCCCCCCEEEEE
Confidence            57777742         578999999999999999999999999999999999999999986 99999999999999999


Q ss_pred             EecC
Q psy15482         73 HLGS   76 (302)
Q Consensus        73 ~~~~   76 (302)
                      .+..
T Consensus       106 ~rl~  109 (115)
T 1we7_A          106 LKER  109 (115)
T ss_dssp             ECCC
T ss_pred             EEcC
Confidence            8753

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.55  E-value=3.1e-16  Score=133.65  Aligned_cols=74  Identities=26%  Similarity=0.325  Sum_probs=0.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|+.++|+|++++||.+||+.|+..+|||+++|+|+|+|++|.|+ .||++|||++|++|+|+.+..
T Consensus         1 MqI~VK~-l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~dygI~~gstL~Lvlrl~   74 (152)
T 3u5c_f            1 MQIFVKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR   74 (152)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEe-CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcccc-CcHHHcCCCCCCEEEEEeecc
Confidence            8999999 8999999999999999999999999999999999999999999986 999999999999999987643

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.55  E-value=1.6e-14  Score=111.80  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=64.4

Q ss_pred             EEEEEeC-CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE-------CCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          2 KVTVSTQ-HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF-------QGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         2 qItV~~~-~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~-------~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      +|+|+.. ++...+.+.+++++||++||++|+..+|||+++|+|+|       .|+.|+|+ +||++|||++|++|||+-
T Consensus         4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~-~tL~~Y~i~~g~~ihlvd   82 (86)
T 4b6w_A            4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAND-KQLGYYQCRDEFVIHVVD   82 (86)
T ss_dssp             EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTT-SBGGGGTCCTTCEEEEEE
T ss_pred             EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCC-CCHHHCCCCCCCEEEEEe
Confidence            4666653 45666789999999999999999999999999999997       48888886 999999999999999997


Q ss_pred             ecC
Q psy15482         74 LGS   76 (302)
Q Consensus        74 ~~~   76 (302)
                      +.+
T Consensus        83 ~~P   85 (86)
T 4b6w_A           83 LQP   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=125.36  Aligned_cols=73  Identities=29%  Similarity=0.337  Sum_probs=68.4

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|++++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|||+.+.
T Consensus        97 ~~i~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~y~i~~g~tl~l~~rl  169 (172)
T 3u30_A           97 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL  169 (172)
T ss_dssp             EEEEEEE-SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-SBSGGGTCCTTCEEEECC--
T ss_pred             ccceeec-ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCC-CcHHHhCCCCCCEEEEEEec
Confidence            6789999 8999999999999999999999999999999999999999999986 89999999999999998764

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=7.3e-15  Score=114.04  Aligned_cols=69  Identities=12%  Similarity=0.196  Sum_probs=62.8

Q ss_pred             CEEEEEeCCCCeEE--EE-EeCCCccHHHHHHHHHhh-hCCCCCCeEEEEC--CeecCCCcccccccCCCCCCEEEE
Q psy15482          1 MKVTVSTQHTNECF--LL-DVSEDLELENFKAFCEVQ-SGYPAHEIAIEFQ--GVLLQDNKKTLKTHGIQDGDLVLL   71 (302)
Q Consensus         1 MqItV~~~~~g~~~--~l-eV~~~~TV~dLK~~Ie~e-~gIp~~~Q~Li~~--Gk~L~D~~~TL~~~gI~dgd~l~L   71 (302)
                      |+|+|++ ..|+.+  +| +|+|+.||.+||+.|+.. .|+|+++|+|+|.  |++|+|+ +||++|||++|++|++
T Consensus        11 M~I~Vk~-~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~-~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           11 YEVEILD-AKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDE-DVLQKLPVGTTATLYF   85 (88)
T ss_dssp             EEEEEEE-SSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTT-CBTTTSSCCSEEEEEE
T ss_pred             EEEEEEC-CCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCC-CCHHHcCCCCCCEEEE
Confidence            8999999 766554  68 999999999999999995 8999999999976  9999986 9999999999999987

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.52  E-value=2.7e-14  Score=112.43  Aligned_cols=70  Identities=21%  Similarity=0.268  Sum_probs=61.2

Q ss_pred             EEEEEeCCCC--eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC--Ce---ec-CCCcccccccCCCCCCEEEEEE
Q psy15482          2 KVTVSTQHTN--ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ--GV---LL-QDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         2 qItV~~~~~g--~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~--Gk---~L-~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      .|+|++ ..+  ..++++|++++||++||++|+..+|||+++|+|+|.  |+   .| +| ++||++|||++|++|+|+.
T Consensus        17 ~l~It~-s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D-~~tL~~Y~i~~gstihlvD   94 (95)
T 2kjr_A           17 KVNVSN-SHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNN-DAQLGYYANSDGLRLHVVD   94 (95)
T ss_dssp             EEEEEE-SSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCT-TSBHHHHCCSSSCEEEEEE
T ss_pred             EEEEEE-CCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCC-CCCHhHCCcCCCCEEEEEC
Confidence            577777 443  588999999999999999999999999999999998  55   45 55 4999999999999999974

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.51  E-value=3.3e-14  Score=112.40  Aligned_cols=73  Identities=16%  Similarity=0.147  Sum_probs=62.0

Q ss_pred             EEEEEeC-CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC---ee---c-CCCcccccccCCCCCCEEEEEE
Q psy15482          2 KVTVSTQ-HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG---VL---L-QDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         2 qItV~~~-~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G---k~---L-~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      .|+|++. ..+..++++|++++||++||++|+..+|||+++|+|+|.|   +.   | +| ++||++|||++|++|+|+.
T Consensus        16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D-~~tL~~Y~I~~g~~Ihlvd   94 (97)
T 2kj6_A           16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDD-SRPLGFFSPFDGFRLHIID   94 (97)
T ss_dssp             EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGG-GSCHHHHCCCSCCEEEEEE
T ss_pred             EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCC-cCCHHHCCCCCCCEEEEEe
Confidence            4677762 2235789999999999999999999999999999999988   33   4 55 5999999999999999987


Q ss_pred             ec
Q psy15482         74 LG   75 (302)
Q Consensus        74 ~~   75 (302)
                      ..
T Consensus        95 ~~   96 (97)
T 2kj6_A           95 LD   96 (97)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.6e-14  Score=113.65  Aligned_cols=72  Identities=11%  Similarity=0.117  Sum_probs=64.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE--CCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF--QGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~--~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |.++++. .+|+.++|+|++++||++||++|+.++|||+++|+|+|  .|+ |+|+ .+|++|+|+.|++|||+...
T Consensus         9 m~~~~vk-~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~-~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            9 MLDFRVE-YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDS-TVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             EEEEEEE-CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTT-SBHHHHCCCSEEEEEECCSS
T ss_pred             eEEEEEE-eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCc-CCHHHcCCCCCCEEEEEecC
Confidence            5667777 89999999999999999999999999999999999996  566 8885 89999999999999997654

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.48  E-value=5.5e-14  Score=112.64  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=66.0

Q ss_pred             CEEEEEeCCCCeEEEEEeC-CCccHHHHHHHHHhhhCCCCCCeEEEECCe-----------ec----CCCcccccccCCC
Q psy15482          1 MKVTVSTQHTNECFLLDVS-EDLELENFKAFCEVQSGYPAHEIAIEFQGV-----------LL----QDNKKTLKTHGIQ   64 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~-~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk-----------~L----~D~~~TL~~~gI~   64 (302)
                      |+|+|++ .+|.. .|+|+ +++||.+||++|+..+|||+++|+|+|+|+           .|    .| ++||++|||+
T Consensus         8 M~irvrs-~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d-~~tL~~~gi~   84 (107)
T 1wf9_A            8 TMLRVRS-RDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADP-NLRISSLNLA   84 (107)
T ss_dssp             EEEEEEC-SSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCT-TCBGGGTCCC
T ss_pred             EEEEEEC-CCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCC-CCCHHHCCCC
Confidence            7899999 77865 79999 999999999999999999999999999998           43    55 4899999999


Q ss_pred             CCCEEEEEEecCC
Q psy15482         65 DGDLVLLKHLGSY   77 (302)
Q Consensus        65 dgd~l~L~~~~~~   77 (302)
                      +||+|||+....+
T Consensus        85 ~G~~L~l~~~~~~   97 (107)
T 1wf9_A           85 HGSMVYLAYEGER   97 (107)
T ss_dssp             TTCEEECCCSSCC
T ss_pred             CCCEEEEEeCCCC
Confidence            9999999877543

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.47  E-value=9.8e-14  Score=130.36  Aligned_cols=73  Identities=29%  Similarity=0.337  Sum_probs=68.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.++++|++++||.+||++|+..+|||+++|+|+|+|++|+|+ +||++|||++|++|+|+.+.
T Consensus       234 MqI~VKt-l~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~-~TLsdygI~~gstL~LvlRL  306 (307)
T 3ai5_A          234 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL  306 (307)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTGGGTCCTTCEEEEEC--
T ss_pred             EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCC-CCHHHcCCCCCCEEEEEEeC
Confidence            7899999 8899999999999999999999999999999999999999999986 99999999999999998763

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.45  E-value=1.6e-13  Score=107.35  Aligned_cols=72  Identities=25%  Similarity=0.284  Sum_probs=61.3

Q ss_pred             EEEEEeCCCC-eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC---ee---c-CCCcccccccCCCCCCEEEEEE
Q psy15482          2 KVTVSTQHTN-ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG---VL---L-QDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         2 qItV~~~~~g-~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G---k~---L-~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      .|+|+. ... ..++++|++++||++||++|+..+|||+++|+|+|.|   +.   | +|+ +||++|||++|++|||+.
T Consensus         9 ~l~I~~-~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~-~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            9 MVFISS-SLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQED-ALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEE-TTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSS-SBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEE-CCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCc-CCHhHCCCCCCCEEEEEE
Confidence            466766 333 2689999999999999999999999999999999986   54   4 564 999999999999999986


Q ss_pred             ec
Q psy15482         74 LG   75 (302)
Q Consensus        74 ~~   75 (302)
                      ..
T Consensus        87 ~~   88 (95)
T 1v6e_A           87 HS   88 (95)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.41  E-value=1.8e-14  Score=126.60  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ ++|++++|+|++++||.+||++|+..+|||+++|+|+|+|++|.|+ .||+     +|++|||+.+.
T Consensus         1 MqI~VKt-L~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~-~TLs-----~~STLhLvlRL   68 (189)
T 2xzm_9            1 MQVQVKT-LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNT-ELVT-----DDVTYYLSLKL   68 (189)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             CEEEEEc-CCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCC-Cccc-----CCCEEEEEEec
Confidence            9999999 9999999999999999999999999999999999999999999996 8998     89999998764

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.40  E-value=4.7e-13  Score=102.79  Aligned_cols=73  Identities=21%  Similarity=0.248  Sum_probs=64.4

Q ss_pred             CEEEEEeCCCCeEEEEE-eCCCccHHHHHHHHHhhhCCCCCCeEEEEC--CeecC--CCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLD-VSEDLELENFKAFCEVQSGYPAHEIAIEFQ--GVLLQ--DNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~le-V~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~--Gk~L~--D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+. .++ |++++||.+||+.|+.++|||++.|+|+|+  +|+|.  |+++||++|||++|++|+|....
T Consensus         1 m~i~vr~-~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~   78 (86)
T 2kzr_A            1 WRVRCKA-KGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ   78 (86)
T ss_dssp             CCEEEEE-TTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred             CEEEEEc-CCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence            8999999 88854 588 999999999999999999999999999997  48874  34589999999999999997654

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.38  E-value=1.2e-12  Score=107.22  Aligned_cols=72  Identities=18%  Similarity=0.282  Sum_probs=61.5

Q ss_pred             EEEEEeCCCCe-EEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC---e---ec-CCCcccccccCCCCCCEEEEEE
Q psy15482          2 KVTVSTQHTNE-CFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG---V---LL-QDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         2 qItV~~~~~g~-~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G---k---~L-~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      .|+|++ ..+. .++++|++++||++||++|+..+|||+++|+|+|.|   +   .| +| ++||++|||++|++|||+.
T Consensus         8 ~l~V~~-~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D-~~tL~~y~i~~g~~ihvvd   85 (122)
T 1t0y_A            8 DLEITT-NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDG-AKSLKDLGVRDGYRIHAVD   85 (122)
T ss_dssp             EEEEEE-SSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCC-SSBTTTTTCCSSEEEEEEE
T ss_pred             EEEEEE-CCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCC-cCCHHHCCCCCCCEEEEEe
Confidence            566776 3332 688999999999999999999999999999999987   4   34 55 4999999999999999987


Q ss_pred             ec
Q psy15482         74 LG   75 (302)
Q Consensus        74 ~~   75 (302)
                      ..
T Consensus        86 ~~   87 (122)
T 1t0y_A           86 VT   87 (122)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.34  E-value=1.2e-12  Score=123.85  Aligned_cols=73  Identities=10%  Similarity=0.112  Sum_probs=64.2

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE---ECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE---FQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li---~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      .|+|+  .+|+.|+|+|++++||++||+.|+..+|||+++|+|+   |+|++|+|+ .+|++|||++|++|+|+.....
T Consensus         7 ~i~Vk--~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~-~~L~~~~ik~g~~l~L~gs~~~   82 (320)
T 3shq_A            7 VVIVK--WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADN-VKISALELKPNFKLMMVGSTEA   82 (320)
T ss_dssp             EEEEE--ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTT-SBTTSSCCC--CEEEEECCCC-
T ss_pred             EEEEE--ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCcc-ccHHHcCCCCCCEEEEEccchh
Confidence            45555  4899999999999999999999999999999999999   899999996 8999999999999999977543

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.30  E-value=8.6e-12  Score=97.79  Aligned_cols=74  Identities=12%  Similarity=0.347  Sum_probs=64.0

Q ss_pred             EEEEEeC--CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC-------eecCCCcccccccCCCCCCEEEEE
Q psy15482          2 KVTVSTQ--HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG-------VLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         2 qItV~~~--~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G-------k~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      +|+|+++  .+++.+.+.+++++||.+||.+|+..+|+|+..|+|+|.+       ..|.|+.++|+.|||.+|++|||.
T Consensus        11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~   90 (97)
T 1wjn_A           11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence            4667764  5688899999999999999999999999999999999873       236666799999999999999998


Q ss_pred             Eec
Q psy15482         73 HLG   75 (302)
Q Consensus        73 ~~~   75 (302)
                      ...
T Consensus        91 d~~   93 (97)
T 1wjn_A           91 WSG   93 (97)
T ss_dssp             CCS
T ss_pred             ecC
Confidence            754

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.30  E-value=7.7e-12  Score=98.17  Aligned_cols=73  Identities=12%  Similarity=0.225  Sum_probs=68.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.+.+.|.+++++..|+..++++.|+|+++++|+|+|+.|.++ +|+++|++++||+|+++.+.
T Consensus         8 i~ikVk~-~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~~   80 (94)
T 2io1_B            8 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ   80 (94)
T ss_dssp             EEEEEEC-TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEEC-CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEec
Confidence            5677777 7899999999999999999999999999999999999999999986 89999999999999998865

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.26  E-value=2e-11  Score=90.85  Aligned_cols=70  Identities=13%  Similarity=0.241  Sum_probs=65.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      |+|.|++ .+|+.+.+.|.+++++..|+...+++.|+|+++++|+|+|+.|.++ .|.++|++++||+|++.
T Consensus         2 i~lkV~~-~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTT-CCTTTTTCCTTEEEEEE
T ss_pred             EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEE
Confidence            5678887 7899999999999999999999999999999999999999999986 89999999999999985

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.21  E-value=4.8e-11  Score=93.10  Aligned_cols=73  Identities=12%  Similarity=0.225  Sum_probs=67.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|.|++ .+|+.+.+.|.+++++..|+..++++.|+|+++++|+|+|+.|.++ +|.++|++++||+|.++...
T Consensus         6 i~ikVk~-~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~q   78 (91)
T 2io0_B            6 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ   78 (91)
T ss_dssp             EEEEEEC-TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred             EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEec
Confidence            4567777 7889999999999999999999999999999999999999999986 89999999999999998764

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.19  E-value=8e-11  Score=89.29  Aligned_cols=70  Identities=20%  Similarity=0.367  Sum_probs=64.6

Q ss_pred             CEEEEEeCCCCe-EEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          1 MKVTVSTQHTNE-CFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         1 MqItV~~~~~g~-~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      |+|.|++ .+|+ .+.+.|.+++++..|+...+.+.|+++++++|+|+|+.|.++ +|.++|++++||+|++.
T Consensus         8 i~ikV~~-~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            8 LRLRVQG-KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGK-ELPADLGLESGDLIEVW   78 (79)
T ss_dssp             EEEEEEC-SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSC-CCHHHHTCCTTCEEEEE
T ss_pred             EEEEEEe-CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEe
Confidence            4677777 7784 889999999999999999999999999999999999999986 89999999999999985

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.15  E-value=1.2e-10  Score=90.98  Aligned_cols=73  Identities=12%  Similarity=0.225  Sum_probs=66.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|.|++ .+|+.+.+.|.+++++..|+..++.+.|+++++++|+|+|+.|.++ .|+++|++.+||+|+++...
T Consensus        18 i~ikV~~-~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~dl~medgD~Idv~~~q   90 (93)
T 2d07_B           18 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ   90 (93)
T ss_dssp             EEEEEEC-TTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred             EEEEEEC-CCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeec
Confidence            3566766 6888899999999999999999999999999999999999999986 89999999999999998764

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.10  E-value=1.6e-10  Score=92.37  Aligned_cols=73  Identities=12%  Similarity=0.225  Sum_probs=67.4

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|.|++ .+|+.+.+.|.+++++..|+..+..+.|+++++++|+|+|+.|.++ .|.++|++++||+|+++...
T Consensus        25 I~IkVk~-~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~q   97 (104)
T 1wz0_A           25 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ   97 (104)
T ss_dssp             EEEEEEC-SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTT-SCTTTTTCCTTEEEEECCCC
T ss_pred             EEEEEEC-CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEec
Confidence            4677777 7888899999999999999999999999999999999999999986 89999999999999998654

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.04  E-value=2.2e-10  Score=92.44  Aligned_cols=73  Identities=15%  Similarity=0.246  Sum_probs=67.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+.+.+.|.+++++..|+..+..+.|+|+++++|+|+|+.|.++ +|.++|++++||+|+++...
T Consensus        27 I~IkVk~-~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~-~Tp~dl~mEDgD~Idv~~~q   99 (110)
T 2k8h_A           27 VAVKVVN-ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDET-KTPEELGMEDDDVIDAMVEQ   99 (110)
T ss_dssp             EEEEEEE-TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSS-SHHHHHHCSSEEEEEEECCC
T ss_pred             EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEcc
Confidence            4677887 7888899999999999999999999999999999999999999986 89999999999999998764

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=98.99  E-value=1.2e-09  Score=87.66  Aligned_cols=71  Identities=13%  Similarity=0.261  Sum_probs=64.6

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +|.|++  +|+.+.+.|.+++++..|+..+..+.|+++++++|+|+|+.|.++ +|.++|++++||+|.++...
T Consensus        33 ~IkV~~--~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~-~Tp~dl~medgD~Idv~~~q  103 (106)
T 2eke_C           33 NLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQ  103 (106)
T ss_dssp             EEEEEC--SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred             EEEEec--CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCC-CCHHHcCCCCCCEEEEEeec
Confidence            455555  788889999999999999999999999999999999999999986 89999999999999998764

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.66  E-value=1e-07  Score=77.32  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=64.2

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|.|++ .+|..+.+.|.+++++..|+.......|+++.+++++|+|+.|.++ .|.+++++.+||+|.+...
T Consensus        42 ~LKV~~-qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~-~TP~dL~MEDgD~IdV~~~  112 (115)
T 3kyd_D           42 KLKVIG-QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQE  112 (115)
T ss_dssp             EEEEEC-TTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTT-CCTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEc-CCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCC-CCHHHcCCCCCCEEEEEee
Confidence            345555 6678889999999999999999999999999999999999999986 8999999999999999765

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.54  E-value=5.1e-08  Score=74.02  Aligned_cols=71  Identities=14%  Similarity=0.231  Sum_probs=56.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCee---cC-CCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVL---LQ-DNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~---L~-D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |.|.|++  .+..+.|+|++++|+.+|+.+|.+.++++++.|.|++.-.+   |. +.+.+|+++||+.||+|+|..
T Consensus         5 m~lRvrs--~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~~   79 (80)
T 2pjh_A            5 IIIRVQS--PDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFP   79 (80)
T ss_dssp             CCCEEEC--SSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC--
T ss_pred             EEEEEEC--CCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEec
Confidence            5567777  34477799999999999999999999999999888765544   31 234899999999999999853

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.47  E-value=3.7e-07  Score=80.71  Aligned_cols=73  Identities=10%  Similarity=0.236  Sum_probs=65.6

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+...+|..+.+.|.+++++..|+.......|+|+.++|++|+|+.|.++ .|.+++++.+||+|.+....-
T Consensus        30 I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~-~TP~dL~MEdgD~Idv~~~q~  102 (200)
T 3pge_A           30 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQI  102 (200)
T ss_dssp             EEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECCS
T ss_pred             EEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeccC
Confidence            4444435788899999999999999999999999999999999999999986 999999999999999987654

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.42  E-value=4e-07  Score=79.85  Aligned_cols=73  Identities=10%  Similarity=0.249  Sum_probs=65.9

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +|+|+...+|..+.+.|.+++++..|+.......|+++.+++++|+|+.|.++ .|.+++++.|||+|.+....
T Consensus        57 ~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~d-dTPeDLdMEDGDtIDV~leQ  129 (207)
T 3tix_A           57 HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQAD-QTPEDLDMEDNDIIEAHREQ  129 (207)
T ss_dssp             EEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSS-CCTTTTTCCTTEEEEECCCC
T ss_pred             cEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCC-CCHHHcCCCCCCEEEEEEec
Confidence            35555545788899999999999999999999999999999999999999986 89999999999999998764

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.22  E-value=2.9e-06  Score=66.40  Aligned_cols=71  Identities=8%  Similarity=0.079  Sum_probs=52.3

Q ss_pred             EEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecC-CCcccccccCCC-CCCEEEEEEe
Q psy15482          4 TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQ-DNKKTLKTHGIQ-DGDLVLLKHL   74 (302)
Q Consensus         4 tV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~-D~~~TL~~~gI~-dgd~l~L~~~   74 (302)
                      .|-.-..+..++++|.++.||..||+.|++++|||+++|+|+|.|+.|. +....-..|--. ...-|+|..+
T Consensus        16 HVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~   88 (94)
T 4efo_A           16 HVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL   88 (94)
T ss_dssp             EEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred             EEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence            3433256888999999999999999999999999999999999998874 322344444322 2344555544

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.06  E-value=3e-05  Score=58.47  Aligned_cols=66  Identities=20%  Similarity=0.334  Sum_probs=58.7

Q ss_pred             EEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCC-CeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          5 VSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAH-EIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         5 V~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      ++. +....+.+.|.++++|.+|-..--.+.|||++ ..+|.|.|..|..+ .|+.+|+++|||.|-++
T Consensus        14 ~~~-~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~-~tp~DlemeD~D~IDvm   80 (82)
T 3goe_A           14 LRS-SKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPN-DQVQSTELEDEDQVSVV   80 (82)
T ss_dssp             EEE-SSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTT-SBGGGSSCCTTCEEEEE
T ss_pred             hhc-cCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCcc-CChhhhCCcCCceeeee
Confidence            455 55556778999999999999999999999999 99999999999886 89999999999999875

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.06  E-value=5.3e-07  Score=80.12  Aligned_cols=72  Identities=11%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|.| . .+|..+.+.|.+++.+..|+....+..|+++++++++|+|+.|.++ .|.++++++|||+|.+....
T Consensus        22 InLKV-~-qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dd-dTPadL~MEDGDtIDV~leQ   93 (227)
T 3v7o_A           22 INLKV-S-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQ   93 (227)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             EEEEE-e-CCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCC-CCHHHcCCCCCCEEEEEecc
Confidence            34556 4 5788889999999999999999999999999999999999999986 89999999999999998654

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.96  E-value=3.7e-05  Score=60.37  Aligned_cols=68  Identities=19%  Similarity=0.341  Sum_probs=60.0

Q ss_pred             EEEEeCCCC-eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          3 VTVSTQHTN-ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         3 ItV~~~~~g-~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      |.|+. .+| +.+.+.|.+++.+.-|......+.|++++..+++|+|..|..+ .|.+++++.|||+|.+.
T Consensus        28 LkV~~-~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~-~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           28 LRVQG-KEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGR-ELPADLGMESGDLIEVW   96 (97)
T ss_dssp             EEEEE-SSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSC-SCHHHHTCCTTEEEEEE
T ss_pred             EEEEc-CCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEe
Confidence            44444 456 4788999999999999999999999999999999999999886 89999999999999874

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.91  E-value=2.4e-05  Score=59.55  Aligned_cols=70  Identities=14%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             CEEEEEeC---CCCeEEEEEeCCCccHHHHHHHHHhhhCCCC-----CCeEEEECCeecCCCcccccccCCCCCCEEEE
Q psy15482          1 MKVTVSTQ---HTNECFLLDVSEDLELENFKAFCEVQSGYPA-----HEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLL   71 (302)
Q Consensus         1 MqItV~~~---~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~-----~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L   71 (302)
                      |.|.|+.+   -.++.+.|.|+...||..|+..+.+..+++.     .+.++.-+|..|.++ ++|++|+|++||.|.+
T Consensus         3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~-~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGE-CKLSDCGITNGDRLEI   80 (81)
T ss_dssp             CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETT-SBTGGGTCCTTCEEEE
T ss_pred             cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCC-CEEeeCCcCCCCEEEE
Confidence            55555553   3799999999999999999999999998775     345666788889886 8999999999999875

>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*

Probab=97.84  E-value=2.4e-05  Score=62.24  Aligned_cols=67  Identities=16%  Similarity=0.101  Sum_probs=49.2

Q ss_pred             eEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecc
Q psy15482        214 VMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN  283 (302)
Q Consensus       214 ~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~  283 (302)
                      .+.++.++|+|++++||+||||..||++.+...+.+|...--+  ..+-.|+|...-.- -..+.+++++
T Consensus         7 ~RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~--p~~i~GiGG~i~v~-~~~i~i~i~g   73 (104)
T 1fmb_A            7 KRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQ--GTGIGGVGGNVETF-STPVTIKKKG   73 (104)
T ss_dssp             SCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEE--CCCEEETTEEECCE-EEEEEEEETT
T ss_pred             CCCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCC--ccEEEeCCCeEEee-EeeeEEEECC
Confidence            4578999999999999999999999999999988887754001  13455777542222 5667777654

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.71  E-value=4.7e-05  Score=62.67  Aligned_cols=70  Identities=13%  Similarity=0.227  Sum_probs=58.6

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCC-------------------------------------CeEEE
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAH-------------------------------------EIAIE   45 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-------------------------------------~Q~Li   45 (302)
                      |.|+. ++|...++-|+.+.+|.+++..|..+.||+..                                     .|+|-
T Consensus        14 LkV~l-lDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           14 LKIRM-LDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEC-TTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             EEEEc-CCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            67888 89999999999999999999999999999854                                     34442


Q ss_pred             E--CCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482         46 F--QGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus        46 ~--~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      .  .+..|++ ++||.++||.++++|.|.++
T Consensus        93 ~dd~~~WLD~-srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLDH-GRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEECS-SSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCcccC-CCcHHHcCCCCCCEEEEEEE
Confidence            1  2356755 59999999999999999876

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.69  E-value=0.00016  Score=55.92  Aligned_cols=75  Identities=11%  Similarity=0.086  Sum_probs=68.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |.|+|-. .++..+++.|.|++++.++-+..-.++|+++++-.|.|++|+|+- +-.+.-.||-+|..|.|+.....
T Consensus        10 m~v~Vl~-~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDL-SlpfRlsgLpnnAkLELv~~s~s   84 (90)
T 2al3_A           10 SAVSVLA-PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDL-SLQWRFANLPNNAKLEMVPVSRS   84 (90)
T ss_dssp             CCEEEEC-TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESS-SCBHHHHCCCSSCEEEEECSSSC
T ss_pred             cEEEEEc-CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccc-cceeEecCCCCCCEEEEEEccCC
Confidence            6788988 899999999999999999988888899999999999999999965 48999999999999999887643

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.65  E-value=0.00013  Score=64.54  Aligned_cols=73  Identities=10%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+...++..+.+.|..++.+.-|+...++..|+|+++++++|+|+.+.++ +|-.++.+.|+|+|.+.....
T Consensus        22 i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~-~Tpk~L~~ed~d~I~~~~eq~   94 (209)
T 3uf8_A           22 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQI   94 (209)
T ss_dssp             EEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTT-CCTTTTTCCTTEEEEEECSCT
T ss_pred             EEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCC-CChHHhhhcccccchhhcccc
Confidence            4555433567778999999999999999999999999999999999999886 899999999999999887653

>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*

Probab=97.60  E-value=3.8e-05  Score=63.59  Aligned_cols=65  Identities=22%  Similarity=0.192  Sum_probs=46.1

Q ss_pred             eeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecccc
Q psy15482        213 VVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFN  285 (302)
Q Consensus       213 v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~  285 (302)
                      -.+.|+.++|||++++|||||||..|+++..-+.       .+. ......|+|.......-....++||+..
T Consensus        20 ~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p-------~~~-~p~~I~GiGG~i~vr~~~~i~IeI~g~~   84 (132)
T 3slz_A           20 PPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP-------LSD-KSAWVQGATGGKRYRWTTDRKVHLATGK   84 (132)
T ss_dssp             CCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS-------EEE-EEEEEECSSCEEEEEEECCEEEEETTEE
T ss_pred             cCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC-------CCC-CceEEEccCCEEEEEEEeeeEEEECCee
Confidence            3467899999999999999999999999986554       111 1246678886544333334567777643

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.48  E-value=1.6e-05  Score=75.95  Aligned_cols=73  Identities=10%  Similarity=0.236  Sum_probs=0.0

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+...+|..+.+.|..++++..|+....+..|+++++++++|+|+.|.++ .|.++++++|||+|.+.....
T Consensus        22 I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~-~TP~~L~MEDgD~Idv~~~Q~   94 (360)
T 3ix6_A           22 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQI   94 (360)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             EEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCC-CChHHcCCCccchhhhhhccC
Confidence            4444433567778999999999999999999999999999999999999986 899999999999999987643

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.34  E-value=0.0011  Score=51.81  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+....|..+-+.|..++-+.-|...-....|+++++.+++|+|..+.++ .|-+++|+.+||+|-+...
T Consensus        22 IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~-~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           22 FPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPT-ATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             EEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTT-SCHHHHTCCSSCEEEEEEC
T ss_pred             EEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCC-CCHhHcCCCCCCEEEEEEe
Confidence            3444333677788999999999999999999999999999999999999886 8999999999999988764

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.34  E-value=3e-05  Score=74.37  Aligned_cols=73  Identities=8%  Similarity=0.227  Sum_probs=0.0

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+...++..+.+.|..++++..|+....++.|+++.+++++|+|+.|.++ .|.+++|+++||+|.+.....
T Consensus        31 i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~-~Tp~~l~med~d~i~~~~~q~  103 (389)
T 4da1_A           31 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QAPEDLDMEDNDIIEAHREQI  103 (389)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             EEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEeeeeeccc
Confidence            5555534566778999999999999999999999999999999999999986 899999999999999887653

>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...

Probab=97.21  E-value=0.0005  Score=54.10  Aligned_cols=60  Identities=23%  Similarity=0.408  Sum_probs=40.5

Q ss_pred             EEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhcccc-ceecccCcceeeeEEEEeeeeecc
Q psy15482        215 MLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWA-GIAKGVGVQKILGRIHMAIAELTN  283 (302)
Q Consensus       215 mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~-~~a~gvg~~~i~G~i~~~~~~ig~  283 (302)
                      +-++.++|+|+.++|++||||..||++..     ++    -.|++ .+--|+|..--.-+-..+.++|.+
T Consensus         8 rP~vtvkI~Gq~~eaLLDTGAD~TVl~~~-----~~----p~~wkpk~igGiGG~i~v~qy~qi~iei~g   68 (99)
T 2hs1_A            8 RPLVTIKIGGQLKEALLDTGADDTIIEEM-----SL----PGRWKPKMIGGIGGFIKVRQYDQIIIEIAG   68 (99)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSEEESCC-----SS----CCCCEEEEEEETTEEEEEEEEEEEEEEETT
T ss_pred             CCEEEEEECCEEEEEEeccCCCcEEEecc-----cC----CCCCCCcEEEeCCCcEeeeEeccEEEEEeC
Confidence            46889999999999999999999999952     22    23444 345577744223333455555543

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.14  E-value=0.0021  Score=48.50  Aligned_cols=71  Identities=18%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC--CCcccccccCCCCCCEEEEEEe
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ--DNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~--D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|-|+. .+|..+.-....+.||.+|...|.. .+.+.....|+  |=.|.|.  |.++||+++|+.++++|+|..+
T Consensus         9 ~i~iRl-pdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~k   83 (84)
T 3qx1_A            9 KLRIRT-PSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK   83 (84)
T ss_dssp             EEEEEC-TTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred             EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence            467788 7888888888899999999999998 67788888998  4478885  6568999999999999998654

>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...

Probab=97.07  E-value=0.00036  Score=54.95  Aligned_cols=28  Identities=25%  Similarity=0.542  Sum_probs=25.9

Q ss_pred             eEEEEEEEEcCeeEEEEEcCCCccccCC
Q psy15482        214 VMLYINCKVNGYPVKAFIDSGAQTTIMS  241 (302)
Q Consensus       214 ~mlyi~~~ing~~v~a~vDsGaq~~i~s  241 (302)
                      .+-|+.++|||++++||+||||..||++
T Consensus         7 ~RP~vti~I~Gq~~e~LLDTGAD~TVl~   34 (99)
T 3ec0_A            7 KRPVVTAYIEGQPVEVLLDTGADDSIVA   34 (99)
T ss_dssp             SCCEEEEEETTEEEEEEECTTCSSCEES
T ss_pred             cCCeEEEEECCEEEEEEEecCCCceEEc
Confidence            4568999999999999999999999996

>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*

Probab=96.97  E-value=0.0012  Score=53.27  Aligned_cols=27  Identities=37%  Similarity=0.656  Sum_probs=25.3

Q ss_pred             EEEEEEEEcCeeEEEEEcCCCccccCCH
Q psy15482        215 MLYINCKVNGYPVKAFIDSGAQTTIMSL  242 (302)
Q Consensus       215 mlyi~~~ing~~v~a~vDsGaq~~i~s~  242 (302)
                      .-++ ++|+|+.++||+||||..||++.
T Consensus        14 rP~v-ikI~Gq~~eaLLDTGAD~TVi~~   40 (116)
T 2hah_A           14 PEIL-IFVNGYPIKFLLDTGADITVLNR   40 (116)
T ss_dssp             CEEE-EEETTEEEEEEECTTCSSCEEEG
T ss_pred             CCEE-EEECCEEEEEEecCCCCcEEEcc
Confidence            5688 99999999999999999999996

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=96.88  E-value=0.0086  Score=47.50  Aligned_cols=74  Identities=18%  Similarity=0.249  Sum_probs=62.7

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC--CCcccccccCCCCCCEEEEEEecC
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ--DNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~--D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      +|-|+. .+|..+.-....+.||.+|.+.|....+.+.....|+  |--|.|.  |.++||+++|+.+..+|++.....
T Consensus        15 ~IqIRl-pdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~~   92 (109)
T 2dzk_A           15 RIQFRL-PDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAGR   92 (109)
T ss_dssp             EEEEEC-SSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCSS
T ss_pred             EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECcC
Confidence            467888 7899888899999999999999999988887788887  5577786  556899999999999998877543

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=96.43  E-value=0.0066  Score=44.98  Aligned_cols=62  Identities=21%  Similarity=0.264  Sum_probs=49.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|+. .......+++++..||.||-.    +.|+|++.-.+..||+.+..+ .      +.+||.|.++.-
T Consensus         1 M~v~Vkl-~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d-~------~l~GD~VeIv~~   62 (74)
T 2l32_A            1 MNVTVEV-VGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPED-Q------SVEVDRVKVLRL   62 (74)
T ss_dssp             CEEEEEC-SSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTT-S------SSCCCCEEECSS
T ss_pred             CEEEEEE-eCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHH-H------CCCCCEEEEEEe
Confidence            9999998 555556789999999999754    578999988888999998665 2      346999988653

>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...

Probab=96.36  E-value=0.0056  Score=54.01  Aligned_cols=60  Identities=17%  Similarity=0.306  Sum_probs=40.5

Q ss_pred             EEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhcccc-ceecccCcceeeeEEEEeeeeecc
Q psy15482        215 MLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWA-GIAKGVGVQKILGRIHMAIAELTN  283 (302)
Q Consensus       215 mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~-~~a~gvg~~~i~G~i~~~~~~ig~  283 (302)
                      +..+.++|+|++++||+||||..||++.     .+|.    .||+ .+-.|+|..--.-+-....++|.+
T Consensus         8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~~-----~~lp----g~w~pk~igGIGG~i~vrqy~~i~iei~g   68 (203)
T 3ka2_A            8 RPLVTIRIGGQLKEALLDTGADDTVIEE-----LNLP----GXWKPKLIGGIAGFIKVRQYDQIPVEIXG   68 (203)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEECS-----CCCS----SCEEEEEEEETTEEEEEEEEEEEEEEETT
T ss_pred             CCeEEEEECCEEEEEEEecCCCceEEec-----ccCC----CCCCceEEEEccCcEEEEEEcceeEEEcC
Confidence            4568899999999999999999999983     3333    2442 244577743333444556666543

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=96.24  E-value=0.016  Score=47.09  Aligned_cols=72  Identities=18%  Similarity=0.299  Sum_probs=60.8

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeec--CCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLL--QDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L--~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +|-|+. .+|..+.-....+.||.+|...|... +.+.....|+  |=.|.|  .|.++||.++|+.+..+|+|...-
T Consensus        45 ~IqIRl-PdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d  120 (124)
T 1wj4_A           45 QLMLRY-PDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESG  120 (124)
T ss_dssp             EEEEEC-TTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECC
T ss_pred             EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEcc
Confidence            467788 78888888899999999999999987 7888888888  558888  565689999999999899887653

>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1

Probab=96.14  E-value=0.0047  Score=45.78  Aligned_cols=39  Identities=26%  Similarity=0.514  Sum_probs=33.1

Q ss_pred             HHHHHHhcCHHHH----HHHHhcChhHHHHhhcCChHHHHHHHH
Q psy15482        117 TVRQLLLDNPKEI----ALLQQNNPRLADALLNGSPEDFERILR  156 (302)
Q Consensus       117 ~iR~~~l~NP~~~----~~L~~~NPeLa~al~~~d~e~f~~~lr  156 (302)
                      .+|+++.+||+++    ++|.++||+|++.|. .|++.|-++|.
T Consensus        17 qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~-~n~e~Fl~ll~   59 (72)
T 1pve_A           17 QMRQIIQQNPSLLPALLQQIGRENPQLLQQIS-QHQEHFIQMLN   59 (72)
T ss_dssp             THHHHHTTCGGGHHHHHHHHHTTCHHHHHHHH-TTHHHHHHHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH-HCHHHHHHHHc
Confidence            6999999999765    456789999999996 68999999884

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=96.09  E-value=0.047  Score=39.54  Aligned_cols=61  Identities=21%  Similarity=0.331  Sum_probs=47.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|..  ......++++...||.+|...+    ++++..-.+..||..+..+ .     -+++||.|.+..
T Consensus         5 m~i~vNg--~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~   65 (70)
T 1ryj_A            5 MKFTVIT--DDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIR   65 (70)
T ss_dssp             EEEEEEE--TTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEE
T ss_pred             EEEEEeC--ccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEe
Confidence            6788877  3334467888889999998876    5777777788999998654 2     589999999875

>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*

Probab=95.94  E-value=0.0082  Score=43.06  Aligned_cols=45  Identities=27%  Similarity=0.552  Sum_probs=36.3

Q ss_pred             CCCCHH--HHHHHHhcCHHHH----HHHHhcChhHHHHhhcCChHHHHHHHH
Q psy15482        111 LSDDPA--TVRQLLLDNPKEI----ALLQQNNPRLADALLNGSPEDFERILR  156 (302)
Q Consensus       111 ~~~npe--~iR~~~l~NP~~~----~~L~~~NPeLa~al~~~d~e~f~~~lr  156 (302)
                      +.++|.  .+|+++.+||+++    ++|.++||+|++.|. .|++.|-+++.
T Consensus         7 Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~-~n~e~Fl~ll~   57 (61)
T 2f4m_B            7 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS-QHQEHFIQMLN   57 (61)
T ss_dssp             GTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHH-HSHHHHHHHHT
T ss_pred             HHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH-HCHHHHHHHHc
Confidence            455665  7899999999765    456789999999996 58999998873

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=95.83  E-value=0.051  Score=42.89  Aligned_cols=73  Identities=11%  Similarity=0.148  Sum_probs=59.0

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC-CCcccccccCCCCCCEEEEEEecC
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ-DNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~-D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      +|-|+. .+|..+.-....+.||.+|...|... +.......|+  |=.|.|. |.++||+++|+.+..+|+|..+-.
T Consensus        25 ~IqiRl-pdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~~  100 (109)
T 2cr5_A           25 TVALRC-PNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKEQ  100 (109)
T ss_dssp             EEEEEC-TTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECCC
T ss_pred             EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCCC
Confidence            467788 78888888888899999999999965 5566677886  4577886 556899999999999998876543

>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A

Probab=95.83  E-value=0.0052  Score=49.48  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=24.4

Q ss_pred             EEEEEEEcCeeEEEEEcCCCccccCCH
Q psy15482        216 LYINCKVNGYPVKAFIDSGAQTTIMSL  242 (302)
Q Consensus       216 lyi~~~ing~~v~a~vDsGaq~~i~s~  242 (302)
                      -.+.++|+|++++||+||||..||++.
T Consensus        10 P~vti~I~Gq~~eaLLDTGADdTVi~~   36 (114)
T 3sqf_A           10 PSLTLWLDDKMFTGLINTGADVTIIKL   36 (114)
T ss_dssp             CEEEEEETTEEEEEEECTTCSSCEEEG
T ss_pred             CeEEEEECCEEEEEEEccCCCceEEec
Confidence            457789999999999999999999984

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=95.33  E-value=0.049  Score=44.29  Aligned_cols=68  Identities=12%  Similarity=0.255  Sum_probs=55.1

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhh-hCCCCCCeEEE--ECCeecCCCcccccccCCCCCCEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQ-SGYPAHEIAIE--FQGVLLQDNKKTLKTHGIQDGDLVLL   71 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e-~gIp~~~Q~Li--~~Gk~L~D~~~TL~~~gI~dgd~l~L   71 (302)
                      +|-|+. .+|..+.-....+.||.+|...|... .+.+.....|+  |-.|.|.|.++||+++|+.+. .|++
T Consensus        54 ~IqIRl-pdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~ps-avl~  124 (127)
T 1s3s_G           54 NIQIRL-ADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA-VIVQ  124 (127)
T ss_dssp             CEEEEE-TTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSC-EEEE
T ss_pred             EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCc-eEEE
Confidence            477888 78988888999999999999999986 34556677887  558889876799999999974 4443

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=94.81  E-value=0.084  Score=46.55  Aligned_cols=64  Identities=11%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             eEEEEEeCCCccHHHHHHHHHhhhCCCCC-CeEEEE---C--CeecCCCcccccccCCCCCCEEEEEEec
Q psy15482         12 ECFLLDVSEDLELENFKAFCEVQSGYPAH-EIAIEF---Q--GVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus        12 ~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-~Q~Li~---~--Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      ..+++.++...||.+|+..+...++||.+ +-||..   .  ...|.|.++||++++|.+|+.|.|-.+.
T Consensus       140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~  209 (217)
T 4a3p_A          140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN  209 (217)
T ss_dssp             EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence            34678899999999999999999999997 688862   2  2345665589999999999999998875

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=94.72  E-value=0.13  Score=45.78  Aligned_cols=64  Identities=13%  Similarity=0.125  Sum_probs=54.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHhhhCCCCC-CeEEEE-C----CeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482         13 CFLLDVSEDLELENFKAFCEVQSGYPAH-EIAIEF-Q----GVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus        13 ~~~leV~~~~TV~dLK~~Ie~e~gIp~~-~Q~Li~-~----Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      .+++.++...||.+|+..+...++||.+ +-||.. +    ...|.|.+.||++++|.+|+.|.+-.+..
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~  222 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE  222 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence            4567789999999999999999999997 689974 3    34566656899999999999999988753

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=94.37  E-value=0.15  Score=47.97  Aligned_cols=69  Identities=13%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhC----CCCCCeEEEE------CCeecCCCcccccccCCCCCCEEEEE
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSG----YPAHEIAIEF------QGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~g----Ip~~~Q~Li~------~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      +.|..  .+.+.++..+|++||.|....|.++..    .+.++--|+.      +|+-|.++ +||+.|++++|+.|...
T Consensus         6 ~~~~~--~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~-~~l~~y~~~~~~~l~~~   82 (371)
T 3ivf_A            6 LKISI--GNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAG-KALDYYMLRNGDTMEYR   82 (371)
T ss_dssp             EEEEE--TTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTT-SBGGGGTCCTTCEEEEE
T ss_pred             EEEEe--cceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCC-CCHHHhCCCCCceeecc
Confidence            34444  377889999999999999999987763    4678889988      67778886 89999999999999887


Q ss_pred             Ee
Q psy15482         73 HL   74 (302)
Q Consensus        73 ~~   74 (302)
                      .+
T Consensus        83 ~~   84 (371)
T 3ivf_A           83 KK   84 (371)
T ss_dssp             EC
T ss_pred             Cc
Confidence            54

>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*

Probab=94.32  E-value=0.025  Score=45.49  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=32.5

Q ss_pred             EEEEEEEEc-----CeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccc----eecccC
Q psy15482        215 MLYINCKVN-----GYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAG----IAKGVG  266 (302)
Q Consensus       215 mlyi~~~in-----g~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~----~a~gvg  266 (302)
                      +-.+.++|+     |+.+.||+||||..||+..     .+    .-.||+-    +--|+|
T Consensus        10 RPlvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~----lPg~Wkp~~tkiiGGiG   61 (116)
T 3liy_A           10 RPVIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----AL----FSSNTPLKNTSVLGAGG   61 (116)
T ss_dssp             CCEEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GG----SCTTCCEEECCEEETTE
T ss_pred             CCeEEEEEccccCCCeEeEEEeccCCCccEEec-----cc----CCCCCcccccceEeecc
Confidence            346788999     9999999999999999973     22    3345555    556677

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=94.28  E-value=0.23  Score=39.59  Aligned_cols=65  Identities=20%  Similarity=0.306  Sum_probs=47.3

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhh--hCCC------CCCeEEEE----CCeecCCCc------------ccccccCCCC
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQ--SGYP------AHEIAIEF----QGVLLQDNK------------KTLKTHGIQD   65 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e--~gIp------~~~Q~Li~----~Gk~L~D~~------------~TL~~~gI~d   65 (302)
                      .+..+++.|-..+||.++|++|-..  .|.|      +++..|-+    .|++|.|.+            .||++|+|.|
T Consensus        22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  101 (111)
T 4e71_A           22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD  101 (111)
T ss_dssp             CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred             CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence            4566888888999999999988765  2444      45667776    356676521            3799999999


Q ss_pred             CCEEEEEEe
Q psy15482         66 GDLVLLKHL   74 (302)
Q Consensus        66 gd~l~L~~~   74 (302)
                      |.+|-|+.+
T Consensus       102 gatl~l~~~  110 (111)
T 4e71_A          102 GATLILSKV  110 (111)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEeC
Confidence            999998764

>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...

Probab=94.06  E-value=0.035  Score=48.91  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=24.5

Q ss_pred             EEEEEEEEcCeeEEEEEcCCCccccCC
Q psy15482        215 MLYINCKVNGYPVKAFIDSGAQTTIMS  241 (302)
Q Consensus       215 mlyi~~~ing~~v~a~vDsGaq~~i~s  241 (302)
                      ...+.++|+|+.+.||+||||..||++
T Consensus       112 rP~~~iki~Gq~~e~LlDTGAD~TVl~  138 (203)
T 3ka2_A          112 RPLVTIRIGGQLKEALLDTGADDTVIE  138 (203)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEC
T ss_pred             CCcEEEEECCEEEeeeecccCCceeee
Confidence            456789999999999999999999996

>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*

Probab=93.99  E-value=0.02  Score=46.68  Aligned_cols=29  Identities=28%  Similarity=0.282  Sum_probs=25.1

Q ss_pred             eEEEEEEE----------EcCeeEEEEEcCCCccccCCH
Q psy15482        214 VMLYINCK----------VNGYPVKAFIDSGAQTTIMSL  242 (302)
Q Consensus       214 ~mlyi~~~----------ing~~v~a~vDsGaq~~i~s~  242 (302)
                      .+-.|.++          |+|+.+.||+||||..||++.
T Consensus         9 ~rP~v~v~~~~~~~~p~~i~gq~~eaLLDTGAD~TVl~~   47 (124)
T 2rsp_A            9 DRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE   47 (124)
T ss_dssp             SCCEEEEEEEECCSSCCSCSEEEEEEEECTTCSSCEEET
T ss_pred             hCCeEEEEeccCCCCcccCCCEEEEEEecCCCCcEEEec
Confidence            34567777          999999999999999999984

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=93.77  E-value=0.11  Score=39.60  Aligned_cols=57  Identities=11%  Similarity=0.173  Sum_probs=43.4

Q ss_pred             CCeEEEEEeCCC-ccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482         10 TNECFLLDVSED-LELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus        10 ~g~~~~leV~~~-~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|+.  +++++. .||.+|.+.+    ++++....+..||..+..  ....+.-+++||.|.++.-
T Consensus        26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~--~~~~~~~L~dGD~Vei~~~   83 (87)
T 1tyg_B           26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVHF   83 (87)
T ss_dssp             TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEEE
T ss_pred             CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh--hhcCCcCCCCCCEEEEEcc
Confidence            5554  556776 8999998866    677777788899999864  3556667999999998753

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=93.28  E-value=0.13  Score=38.19  Aligned_cols=62  Identities=23%  Similarity=0.371  Sum_probs=47.1

Q ss_pred             CEEEEEeCCCCeEEEEEeC--CCccHHHHHHHHHhhhCCC-CCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVS--EDLELENFKAFCEVQSGYP-AHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~--~~~TV~dLK~~Ie~e~gIp-~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|    +|+.  ++++  ...||.+|.+.+    |++ +..-.+-+||..+..  ....+.-+++||.|.++.-
T Consensus         1 M~I~v----NGe~--~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr--~~~~~~~L~dGD~IEIv~~   65 (78)
T 2k5p_A            1 MNLTV----NGKP--STVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER--EAFDATTVKDGDAVEFLYF   65 (78)
T ss_dssp             CEEEE----TTEE--EECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT--THHHHCEECSSBCEEECCC
T ss_pred             CEEEE----CCEE--EEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEee
Confidence            66665    4554  4566  779999987754    687 777788899999965  3677778999999998654

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.00  E-value=0.2  Score=38.22  Aligned_cols=67  Identities=12%  Similarity=0.177  Sum_probs=55.1

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE---CCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF---QGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~---~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      ++.|.. ...+.+.+.|+|..++.+|--.|=.++.+.++.-.|..   .+.+|+-+ ++|.+|||++   |....
T Consensus        12 RLvVNy-~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLs-kSLndlgirE---Lya~d   81 (91)
T 2daj_A           12 RVVINF-KKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLT-KSLNDLGLRE---LYAMD   81 (91)
T ss_dssp             EEEEEE-TTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTT-SCHHHHTCSE---EEEEE
T ss_pred             EEEEee-cCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchh-cchhhhhhhh---hheec
Confidence            456666 66778889999999999999999999999999999985   45566554 8999999998   55443

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=92.93  E-value=0.11  Score=36.92  Aligned_cols=61  Identities=15%  Similarity=0.269  Sum_probs=44.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|    +|+.  ++++...||.+|...+    +++...-.+..||..+..  ....+.-+++||.|.+..
T Consensus         1 m~i~v----Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~~gD~v~i~~   61 (66)
T 1f0z_A            1 MQILF----NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQ   61 (66)
T ss_dssp             CCEEE----SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH--HHHTTCCCCTTEEECEEE
T ss_pred             CEEEE----CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc--hhcCCcCCCCCCEEEEEe
Confidence            55555    3443  5677889999998876    577777778899998853  234456799999998875

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=92.71  E-value=0.45  Score=34.43  Aligned_cols=65  Identities=20%  Similarity=0.259  Sum_probs=44.4

Q ss_pred             CEEEEEeC--CCCeEEEEEeCCCccHHHHHHHHHhhhCCCC--CCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQ--HTNECFLLDVSEDLELENFKAFCEVQSGYPA--HEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~--~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~--~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|+.-  ...  -++++ +..||.+|.+.+....++..  ..-.+..||+.+.+.     +.-+++||.|.+..
T Consensus         1 M~v~V~~fa~l~~--~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~-----~~~l~~gDeV~i~P   69 (74)
T 3rpf_C            1 MMVEVRFFGPIKE--ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL-----NTPLKDGDVISLLP   69 (74)
T ss_dssp             CEEEEEECTTCCC--CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT-----TCCCCTTCEEEEEC
T ss_pred             CEEEEEEEeecce--eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC-----CcCCCCCCEEEEEC
Confidence            88999862  223  34667 66899999999986544332  345566788876432     34589999998864

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=92.30  E-value=0.23  Score=37.63  Aligned_cols=44  Identities=5%  Similarity=0.132  Sum_probs=38.6

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG   48 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G   48 (302)
                      +|.|..   ..++.+.|+++.+..+|.++|.++.++|++...|.|.-
T Consensus         7 ~VKV~~---~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            7 TLKVHY---KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             EEEEES---SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             EEEEEE---EEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            455555   47899999999999999999999999999999999964

>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}

Probab=91.38  E-value=0.095  Score=40.65  Aligned_cols=29  Identities=34%  Similarity=0.447  Sum_probs=26.0

Q ss_pred             EEEEEcCeeEEEEEcCCCccccCCHHHHH
Q psy15482        218 INCKVNGYPVKAFIDSGAQTTIMSLACAE  246 (302)
Q Consensus       218 i~~~ing~~v~a~vDsGaq~~i~s~~~a~  246 (302)
                      +.++|-|..+++|-||||+.|-++....+
T Consensus        10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~   38 (107)
T 2jys_A           10 LEAEIKGTKLKAHWDSGATITCVPEAFLE   38 (107)
T ss_dssp             EEEEETTEEEEEEECTTCSSEEEEGGGTT
T ss_pred             eeEEEeCcEEEEEecCCCeEEEcchHHhc
Confidence            68999999999999999999999887643

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=90.96  E-value=0.82  Score=37.72  Aligned_cols=66  Identities=24%  Similarity=0.265  Sum_probs=47.6

Q ss_pred             CeEEEEEeCCCccHHHHHHHHHhhh--CCCC------CCeEEEE----CCee-cCCCc------------ccccccCCCC
Q psy15482         11 NECFLLDVSEDLELENFKAFCEVQS--GYPA------HEIAIEF----QGVL-LQDNK------------KTLKTHGIQD   65 (302)
Q Consensus        11 g~~~~leV~~~~TV~dLK~~Ie~e~--gIp~------~~Q~Li~----~Gk~-L~D~~------------~TL~~~gI~d   65 (302)
                      .+.+++.|=..+||.++|++|-...  |+|-      ++..|-+    .|+. |.|.+            .||..|+|.|
T Consensus        40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence            3567899999999999999988763  4543      4556655    3443 65521            2899999999


Q ss_pred             CCEEEEEEecC
Q psy15482         66 GDLVLLKHLGS   76 (302)
Q Consensus        66 gd~l~L~~~~~   76 (302)
                      |.+|.|+.+..
T Consensus       120 ga~l~l~~~~~  130 (138)
T 2r2o_A          120 GATVALVPCLT  130 (138)
T ss_dssp             TCEEEEEEC--
T ss_pred             CCEEEEEECCC
Confidence            99999988753

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=90.47  E-value=1.1  Score=34.00  Aligned_cols=67  Identities=15%  Similarity=0.198  Sum_probs=45.9

Q ss_pred             CEEEEEeC------CCCeEEEEEeCCCccHHHHHHHHHhhhC-C----------CCCCeEEEECCeecCCCcccccccCC
Q psy15482          1 MKVTVSTQ------HTNECFLLDVSEDLELENFKAFCEVQSG-Y----------PAHEIAIEFQGVLLQDNKKTLKTHGI   63 (302)
Q Consensus         1 MqItV~~~------~~g~~~~leV~~~~TV~dLK~~Ie~e~g-I----------p~~~Q~Li~~Gk~L~D~~~TL~~~gI   63 (302)
                      |+|+|+.=      ......++++++..||.+|.+.+..... +          ......+..||+....      +.-+
T Consensus        10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------~~~L   83 (98)
T 1vjk_A           10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------DEEL   83 (98)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------TCBC
T ss_pred             EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC------CCCC
Confidence            67777741      1224567888888999999999887631 1          1233556789987743      3468


Q ss_pred             CCCCEEEEEE
Q psy15482         64 QDGDLVLLKH   73 (302)
Q Consensus        64 ~dgd~l~L~~   73 (302)
                      ++||.|.+..
T Consensus        84 ~dGDeV~i~p   93 (98)
T 1vjk_A           84 KDGDVVGVFP   93 (98)
T ss_dssp             CTTCEEEEES
T ss_pred             CCCCEEEEEC
Confidence            9999998863

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=88.40  E-value=1.5  Score=33.25  Aligned_cols=62  Identities=18%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482         13 CFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus        13 ~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      .+.-.++=..++..||.+++...|++-+.-.++..+..|.++ ++|-+.+|+-.-+|-+..-.
T Consensus         4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~-k~LvdQcVqgeGlVQinvqi   65 (89)
T 2juo_A            4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPD-RSLFDQGVKTDGTVQLSVQV   65 (89)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTT-SBTTTSSCCCCSEEEEEEEE
T ss_pred             hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCC-ccHHHhhcccccEEEEEEEE
Confidence            344455666889999999999999999999999999999886 99999999988888876544

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=87.42  E-value=1.3  Score=31.06  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=41.6

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      +|+.+  ++ +..||.+|...+    +++.....+..||..+..  ..-.+.-+++||.|.+..
T Consensus         5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~   59 (64)
T 2cu3_A            5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVA   59 (64)
T ss_dssp             TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEE
T ss_pred             CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEe
Confidence            56665  45 668999998876    566777778899998854  245556799999999875

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=87.11  E-value=2.9  Score=33.97  Aligned_cols=66  Identities=17%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhh--hCCC------CCCeEEEE----CCee-cCCCc------------ccccccCCC
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQ--SGYP------AHEIAIEF----QGVL-LQDNK------------KTLKTHGIQ   64 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e--~gIp------~~~Q~Li~----~Gk~-L~D~~------------~TL~~~gI~   64 (302)
                      ++..+++.|-..+||.++|++|-..  .|+|      +++..|-|    .|+. |.|.+            .||.+|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            4556888888999999999988765  2444      46777776    3443 55411            379999999


Q ss_pred             CCCEEEEEEec
Q psy15482         65 DGDLVLLKHLG   75 (302)
Q Consensus        65 dgd~l~L~~~~   75 (302)
                      ||.+|.|+.+.
T Consensus        95 dgatv~l~~~~  105 (127)
T 3h6n_A           95 EGASLAMSLID  105 (127)
T ss_dssp             TTCEEEEEECC
T ss_pred             CCCEEEEEEcc
Confidence            99999998664

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=85.89  E-value=4.4  Score=37.48  Aligned_cols=66  Identities=6%  Similarity=0.058  Sum_probs=48.4

Q ss_pred             CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC-eecCCCcccccccCCCC-CCEEEEEEe
Q psy15482          9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG-VLLQDNKKTLKTHGIQD-GDLVLLKHL   74 (302)
Q Consensus         9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G-k~L~D~~~TL~~~gI~d-gd~l~L~~~   74 (302)
                      ..-....+.+++..|+.++++.++.++++++++|.|+|.+ ....+....-+.|.-.. ..-|+|..+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (396)
T 4eut_A          319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSR  386 (396)
T ss_dssp             TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEEC
T ss_pred             ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEec
Confidence            4566778999999999999999999999999999999998 44445434555554332 233444443

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=85.87  E-value=2.2  Score=34.23  Aligned_cols=65  Identities=22%  Similarity=0.279  Sum_probs=46.7

Q ss_pred             CeEEEEEeCCCccHHHHHHHHHhh--hCCCC------CCeEEEE-CC---e-ecCCCc------------ccccccCCCC
Q psy15482         11 NECFLLDVSEDLELENFKAFCEVQ--SGYPA------HEIAIEF-QG---V-LLQDNK------------KTLKTHGIQD   65 (302)
Q Consensus        11 g~~~~leV~~~~TV~dLK~~Ie~e--~gIp~------~~Q~Li~-~G---k-~L~D~~------------~TL~~~gI~d   65 (302)
                      ...+++.|-..+||.++|++|-..  .|.|.      ++..|-+ .|   + +|.|.+            .||.+|+|.|
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            345788888999999999988765  35553      4566765 33   3 254411            2699999999


Q ss_pred             CCEEEEEEec
Q psy15482         66 GDLVLLKHLG   75 (302)
Q Consensus        66 gd~l~L~~~~   75 (302)
                      |.+|-|+.+.
T Consensus       106 gatl~l~~~~  115 (117)
T 4e74_A          106 GSVVALVSKQ  115 (117)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999998774

>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A

Probab=85.71  E-value=0.9  Score=35.31  Aligned_cols=62  Identities=16%  Similarity=0.207  Sum_probs=43.0

Q ss_pred             eEEEEEeCCCccHHHHHHHHHhhhCCCCC-----------CeEEEECC-eecCC-----CcccccccCCCCCCEEEEEE
Q psy15482         12 ECFLLDVSEDLELENFKAFCEVQSGYPAH-----------EIAIEFQG-VLLQD-----NKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus        12 ~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-----------~Q~Li~~G-k~L~D-----~~~TL~~~gI~dgd~l~L~~   73 (302)
                      ....++|++++|+.+|-..+.....+-..           .-.||..+ ..|..     =+++|.++|+.+|+.|++.-
T Consensus         5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD   83 (98)
T 1y8x_B            5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD   83 (98)
T ss_dssp             CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred             CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence            35578999999999999999885332222           34445443 12321     23679999999999999853

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=85.42  E-value=0.84  Score=37.11  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=30.7

Q ss_pred             EEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE
Q psy15482         14 FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF   46 (302)
Q Consensus        14 ~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~   46 (302)
                      .++-|-.++|+.+|+..|+.++|+|++.|||..
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~   90 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP   90 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence            467889999999999999999999999999985

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=85.31  E-value=4.9  Score=31.73  Aligned_cols=71  Identities=13%  Similarity=0.079  Sum_probs=42.9

Q ss_pred             CEEEEEeC-----CCC--eEEEEEeCC---CccHHHHHHHHHhhh-CCC---------C-CCeEEEECCeecCCCcccc-
Q psy15482          1 MKVTVSTQ-----HTN--ECFLLDVSE---DLELENFKAFCEVQS-GYP---------A-HEIAIEFQGVLLQDNKKTL-   58 (302)
Q Consensus         1 MqItV~~~-----~~g--~~~~leV~~---~~TV~dLK~~Ie~e~-gIp---------~-~~Q~Li~~Gk~L~D~~~TL-   58 (302)
                      |+|+|+..     ..|  +.+.++++.   ..||.+|...+...+ +..         . ....++.||+...    -| 
T Consensus        12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~----~l~   87 (114)
T 1wgk_A           12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE----LLG   87 (114)
T ss_dssp             EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH----HHC
T ss_pred             cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee----ccC
Confidence            67888853     123  366788884   369999999998775 110         0 1122334554221    11 


Q ss_pred             -cccCCCCCCEEEEEEec
Q psy15482         59 -KTHGIQDGDLVLLKHLG   75 (302)
Q Consensus        59 -~~~gI~dgd~l~L~~~~   75 (302)
                       .++-+++||.|.+....
T Consensus        88 gldt~L~dGDeV~iip~v  105 (114)
T 1wgk_A           88 ELDYQLQDQDSILFISTL  105 (114)
T ss_dssp             TTTCBCCSSEEEEEEECS
T ss_pred             CcCcCCCCCCEEEEeCCC
Confidence             24679999999886643

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=84.62  E-value=0.91  Score=46.54  Aligned_cols=66  Identities=21%  Similarity=0.310  Sum_probs=48.6

Q ss_pred             CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccC---C------CCCCEEEEEEe
Q psy15482          9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHG---I------QDGDLVLLKHL   74 (302)
Q Consensus         9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~g---I------~dgd~l~L~~~   74 (302)
                      ......++.++++.|+.+|+..|+.++|||++.|.|++.+..-.+.....+.|-   .      .|.++|+|..+
T Consensus       319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (676)
T 3qa8_A          319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN  393 (676)
T ss_dssp             SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred             cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence            456667899999999999999999999999999999986544334335666542   2      35666777655

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=84.24  E-value=5  Score=30.43  Aligned_cols=69  Identities=10%  Similarity=0.097  Sum_probs=42.2

Q ss_pred             CEEEEEeC------C-CCeEEEEEeC--CCccHHHHHHHHHhhhCCC-CCC------------eEEEECCeecCCCcccc
Q psy15482          1 MKVTVSTQ------H-TNECFLLDVS--EDLELENFKAFCEVQSGYP-AHE------------IAIEFQGVLLQDNKKTL   58 (302)
Q Consensus         1 MqItV~~~------~-~g~~~~leV~--~~~TV~dLK~~Ie~e~gIp-~~~------------Q~Li~~Gk~L~D~~~TL   58 (302)
                      |+|+|+.-      . +....+++++  +..||.+|...+.....-. ..-            ..+..||+...    .+
T Consensus         2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~----~~   77 (99)
T 2qjl_A            2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE----LE   77 (99)
T ss_dssp             EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG----GG
T ss_pred             cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc----cc
Confidence            67888741      2 2355678887  6789999999998775211 110            12334555321    11


Q ss_pred             --cccCCCCCCEEEEEE
Q psy15482         59 --KTHGIQDGDLVLLKH   73 (302)
Q Consensus        59 --~~~gI~dgd~l~L~~   73 (302)
                        .++-+++||.|.+..
T Consensus        78 ~~~d~~L~dgDeVa~~P   94 (99)
T 2qjl_A           78 GEKDYILEDGDIISFTS   94 (99)
T ss_dssp             TGGGCBCCTTCEEEEEE
T ss_pred             CCCCcCcCCCCEEEEEC
Confidence              245699999998864

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=82.35  E-value=4.2  Score=30.28  Aligned_cols=70  Identities=23%  Similarity=0.140  Sum_probs=43.3

Q ss_pred             CEEEEEeC-----CCCeEEEEEeCCCccHHHHHHHHHhhhC-C-----C-------CCCeEEEECCeecCCCcccccccC
Q psy15482          1 MKVTVSTQ-----HTNECFLLDVSEDLELENFKAFCEVQSG-Y-----P-------AHEIAIEFQGVLLQDNKKTLKTHG   62 (302)
Q Consensus         1 MqItV~~~-----~~g~~~~leV~~~~TV~dLK~~Ie~e~g-I-----p-------~~~Q~Li~~Gk~L~D~~~TL~~~g   62 (302)
                      |+|+|+.-     ..|....+++ +..||.+|...+..... +     .       .....+..||+..... .-+ +.-
T Consensus         1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~-~~~-~~~   77 (93)
T 3dwg_C            1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFS-GGL-ATA   77 (93)
T ss_dssp             -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGT-TGG-GCB
T ss_pred             CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCc-CCC-CcC
Confidence            78888841     1232234675 45799999999987642 0     1       0124566788877531 122 345


Q ss_pred             CCCCCEEEEEE
Q psy15482         63 IQDGDLVLLKH   73 (302)
Q Consensus        63 I~dgd~l~L~~   73 (302)
                      +++||.|.+..
T Consensus        78 L~~gDeV~i~P   88 (93)
T 3dwg_C           78 IADGDSVTILP   88 (93)
T ss_dssp             CCTTCEEEEEE
T ss_pred             CCCCCEEEEEC
Confidence            89999998865

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=81.77  E-value=5.9  Score=32.06  Aligned_cols=63  Identities=19%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             eEEEEEeCCCccHHHHHHHHHhh----hCCCC----CCeEEEE-C---CeecCCC-------------cccccccCCCCC
Q psy15482         12 ECFLLDVSEDLELENFKAFCEVQ----SGYPA----HEIAIEF-Q---GVLLQDN-------------KKTLKTHGIQDG   66 (302)
Q Consensus        12 ~~~~leV~~~~TV~dLK~~Ie~e----~gIp~----~~Q~Li~-~---Gk~L~D~-------------~~TL~~~gI~dg   66 (302)
                      +.+++.|-..+||.++|++|-..    .|+|.    ++..|-| .   |++|.|.             -.||+.|+|.||
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            56788888999999999977543    37765    3445544 1   2233221             026889999999


Q ss_pred             CEEEEEEe
Q psy15482         67 DLVLLKHL   74 (302)
Q Consensus        67 d~l~L~~~   74 (302)
                      .+|-|+.+
T Consensus       119 atlal~kk  126 (126)
T 3kuz_A          119 STIKVFKK  126 (126)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEeeC
Confidence            99988764

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4

Probab=80.38  E-value=3.1  Score=32.13  Aligned_cols=67  Identities=9%  Similarity=0.091  Sum_probs=47.8

Q ss_pred             CEEEEEeCCC--CeEEEEEeCCCccHHHHHHHHHhh---hCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHT--NECFLLDVSEDLELENFKAFCEVQ---SGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~--g~~~~leV~~~~TV~dLK~~Ie~e---~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|.|.....  ...+.+++++.+||.++-+.....   ..|..+...+-.||+....      +.-+++||.|.+.+
T Consensus        13 ~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~------d~~L~dGDRVEIyr   84 (97)
T 2hj1_A           13 INIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL------TDVLKEGDRIEIYR   84 (97)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT------TCBCCTTCEEEECC
T ss_pred             EEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC------CccCCCCCEEEEEe
Confidence            3556654333  445678999999999998876542   3456666788889998863      23589999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	9e-11
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-09
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	2e-08
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-08
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	1e-07
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	1e-07
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	2e-07
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	2e-07
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-07
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	3e-07
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	7e-07
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	1e-06
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-06
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	2e-06
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	3e-06
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	5e-06
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-06
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-05
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	3e-05
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-05
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	4e-05
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-04
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	5e-04
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	5e-04
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	6e-04
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	6e-04
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	0.001
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	0.002
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	0.002
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	0.003
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	0.003
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	0.004
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	0.004

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (134), Expect = 9e-11
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 1   MKVTVSTQH---TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKT 57
           M +TV       T   F L V+ D EL NF+  CE++SG PA E  I +   LL D+  +
Sbjct: 8   MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 58  LKTHGIQDGDLVLLKHLGSYHATPAAVIPNFDFSG 92
           L ++G++DGD+V+L    +         P+   SG
Sbjct: 68  LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSGPSSG 102

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          + + + +    + + ++V+ +  +  FK      +G P     + + G +L+D+ +T+++
Sbjct: 2  LNIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVES 58

Query: 61 HGIQDGDLVLL 71
          + IQDG  V L
Sbjct: 59 YHIQDGHSVHL 69

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 1  MKVTVSTQ---HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKT 57
          + VTV+     H         S +  +++     E   G P     + F+G  L++ +  
Sbjct: 2  LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61

Query: 58 LKTHGIQDGDLVLL 71
          L   GIQDG  V+L
Sbjct: 62 LSALGIQDGCRVML 75

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (114), Expect = 4e-08
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
            VTV      +   ++++ D     FKA     +G       +  +G  L+D+      
Sbjct: 8  YSVTVKWG-KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGN 64

Query: 61 HGIQDGDLVLLKHLGSYHATPAA 83
            +++G  VL+  +GS  A P  
Sbjct: 65 IKMKNGMTVLM--MGSADALPEE 85

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          ++V V        +   ++ +  +   K   E Q G P  +  +EFQG +LQD    L  
Sbjct: 8  IQVFVKN-PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGI 65

Query: 61 HGIQDGD-LVLLKHLGS 76
          +GIQD D L+L K  GS
Sbjct: 66 YGIQDSDTLILSKKKGS 82

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M++ V T  T +   L+V     +EN KA  + + G P  +  + F G  L+D  +TL  
Sbjct: 1  MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 58

Query: 61 HGIQDGDLVLL 71
          + IQ    + L
Sbjct: 59 YNIQKESTLHL 69

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M + V T  T +   +D+     ++  K   E + G P  +  + + G  L D+ KT K 
Sbjct: 1  MLIKVKT-LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADD-KTAKD 58

Query: 61 HGIQDGDLVLL 71
          + I+ G ++ L
Sbjct: 59 YNIEGGSVLHL 69

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 1  MKVTVSTQHTNECF-LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
          M + V T   ++   + DVS    +E  +               + ++G  L++   TL 
Sbjct: 1  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLF 59

Query: 60 THGIQDGDLVLL 71
           + +   D++ L
Sbjct: 60 DYDVGLNDIIQL 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          ++V V T   ++     V   + ++ FK         P+ +  + +QG +LQD+ K L+ 
Sbjct: 1  LEVLVKTL-DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQE 58

Query: 61 HGIQDGDLVLL 71
          + +    + L+
Sbjct: 59 YNVGGKVIHLV 69

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG------VLLQDN 54
          + V +S+   +       S  L +  FK   E+  G PA  + +E  G        L   
Sbjct: 8  VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67

Query: 55 KKTLKTHGIQDGDLVLL 71
             L ++ + DG  + +
Sbjct: 68 DALLGSYPVDDGCRIHV 84

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 7e-07
 Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSG---YPAHEIAIEFQGVLLQDNKKT 57
          + +T+ T    + F + +  D  ++  K   E + G   +P     + + G +L D+   
Sbjct: 3  VTITLKT-LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDV-P 60

Query: 58 LKTHGIQDGDLVLL 71
          ++ + I + + V++
Sbjct: 61 IRDYRIDEKNFVVV 74

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 17/90 (18%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA---------------HEIAIE 45
          M V V      E   + V ++  + + K   +                          + 
Sbjct: 8  MTVRVCK-MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 46 FQGVLLQDNKKTLKTHGIQDGD-LVLLKHL 74
            G  L +++K L+ +GI++ D +  +K L
Sbjct: 67 SAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 96

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 1  MKVTVSTQHTNECF-LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
          M + V T    +   +  +S   ++E  +   +           + ++G  ++D   TL 
Sbjct: 1  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLF 59

Query: 60 THGIQDGDLVLL 71
           + ++  D + L
Sbjct: 60 DYEVRLNDTIQL 71

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          + + V           +V     + + K       G       + F+G  L+D    L  
Sbjct: 4  LSILVRNN-KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGE 61

Query: 61 HGIQDGDLVLL 71
          +G++    V +
Sbjct: 62 YGLKPLSTVFM 72

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          M V V    ++  F ++V  D  +   K     + G PA ++ + F G  L ++  T++ 
Sbjct: 3  MIVFVRFN-SSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNH-LTVQN 60

Query: 61 HGIQDGDLVLL 71
            ++   +V +
Sbjct: 61 CDLEQQSIVHI 71

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 5e-06
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 1   MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           +KVTV T    E     V E+  ++ FK     +      ++ + F G +L+D   TL  
Sbjct: 33  IKVTVKT--PKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQ 89

Query: 61  HGIQDGDLVLL 71
           HGI DG  V L
Sbjct: 90  HGIHDGLTVHL 100

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 8e-06
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCE---VQSGYPAHEIAIEFQGVLLQDNKKT 57
          M+VT+ T    + F +D+  +  ++  K   E    +  +P     + + G +L D+   
Sbjct: 1  MQVTLKTL-QQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDT-A 58

Query: 58 LKTHGIQDGDLVLL 71
          LK + I + + V++
Sbjct: 59 LKEYKIDEKNFVVV 72

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          ++V+V T    +C    ++E+  +  FK          A  + + F G +L+D    L  
Sbjct: 11 IRVSVKTP--QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDI-LSQ 67

Query: 61 HGIQDGDLVLL 71
           GI DG  V +
Sbjct: 68 RGILDGSTVHV 78

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          +KVTV T    +     V++   ++  K     +      ++ + F G +L+D    L  
Sbjct: 8  IKVTVKT--PKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDS-LAQ 64

Query: 61 HGIQDGDLVLL 71
           G++DG  V L
Sbjct: 65 CGVRDGLTVHL 75

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 1  MKVTVSTQH-TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
          ++V +  +   +   LL+    +     ++      G   + I I      LQ  K   +
Sbjct: 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTL-E 76

Query: 60 THGIQDGDLVLLKHL 74
            G+      ++  L
Sbjct: 77 EQGVAHNVKAMVLEL 91

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          +K+ V  Q ++E     V     L+  K     + G P + +   F+G  + DN  T K 
Sbjct: 3  IKLKVIGQDSSEIHF-KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNH-TPKE 60

Query: 61 HGIQDGDLV 69
           G+++ D++
Sbjct: 61 LGMEEEDVI 69

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
            V +          + V  D      K      +G P     + ++G+      KTL+ 
Sbjct: 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL--VPEDKTLRE 73

Query: 61 HGIQDGDLVLLKHLGSYHATPAA 83
            +  G  +++  +GS  + P++
Sbjct: 74 IKVTSGAKIMV--VGSTISGPSS 94

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 2  KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG------VLLQDNK 55
           + ++T  T+          + L + K   E+  G     + I+           L D  
Sbjct: 6  DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 65

Query: 56 KTLKTHGIQDGDLVLL 71
          K+LK  G++DG  +  
Sbjct: 66 KSLKDLGVRDGYRIHA 81

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 7/68 (10%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 2  KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTH 61
           + +     +      + +   L         + G     +   + G+ +Q ++ T +  
Sbjct: 4  HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-TPEDL 62

Query: 62 GIQDGDLV 69
           ++D D++
Sbjct: 63 DMEDNDII 70

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 1/63 (1%)

Query: 3  VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHG 62
          V +  +        D  E   +   K   E     P  E  +     LL D  KTL   G
Sbjct: 2  VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECG 60

Query: 63 IQD 65
             
Sbjct: 61 FTS 63

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          ++V  + +   +   +  + D  + + K     Q+G   ++I ++    +   +  +L  
Sbjct: 29 IEVVCNDRLGKK-VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIF-KDHVSLGD 86

Query: 61 HGIQDGDLVLL 71
          + I DG  + L
Sbjct: 87 YEIHDGMNLEL 97

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          + V +     +   L     +  +   K+           ++ + +QG LLQD  +TL +
Sbjct: 8  INVRLKFL-NDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSS 63

Query: 61 HGIQDGDLVLL 71
            I +  ++  
Sbjct: 64 LNITNNCVIHC 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 3  VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQ-DNKKTLKTH 61
          +TV        F + +S  + +   KA    + G  A +  +      +   ++  L + 
Sbjct: 3  LTVKML-AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 62 GIQDGDLVLL 71
          G+  G  VLL
Sbjct: 62 GLGPGSTVLL 71

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 2/71 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
           ++ +    T +   L V     + + K       G         F G  L  +K   + 
Sbjct: 4  CQLRLRL-STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKFEE 61

Query: 61 HGIQDGDLVLL 71
            I    +V +
Sbjct: 62 LKIPKDYVVQV 72

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 9/62 (14%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLV 69
            +  +  +    ++   K      +G PA +  ++++G+ ++D+  +L  + + +G ++
Sbjct: 20 NGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMANGAVI 78

Query: 70 LL 71
           L
Sbjct: 79 HL 80

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
          ++V V+     +   +    +  + +FK    +Q G   ++I ++  G +L+D+   L+ 
Sbjct: 2  IEVVVND-RLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHIS-LED 59

Query: 61 HGIQDGDLVLLKHL 74
          + + D   + L +L
Sbjct: 60 YEVHDQTNLELYYL 73

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 10/79 (12%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 1  MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQ-------D 53
          +K+  S Q   +     + + + ++  K         P  E+ + ++   +        +
Sbjct: 12 LKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELEN 71

Query: 54 NKKTLKTHGIQDGDLVLLK 72
          + + L+ + +++GD +L++
Sbjct: 72 DLQPLQFYSVENGDCLLVR 90

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 1   MKVTVSTQHTNECFLLDV-SEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
           ++V+   ++  +   + V S    + + K     +   PA++  +  +   L+DN  +L 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNM-SLA 88

Query: 60  THGIQDGDLVLL 71
            + +  G+++ L
Sbjct: 89  HYNVGAGEILTL 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.83
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.82
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.81
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.81
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.8
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.8
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.79
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.79
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.78
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.78
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.77
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.76
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.76
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.74
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.71
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.71
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.71
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.7
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.7
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.69
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.66
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.65
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.63
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.63
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.62
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.62
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.62
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.59
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.55
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.48
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.36
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.35
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.25
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.22
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.49
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d2fmba_	104	EIAV protease {Equine infectious anemia virus [Tax	97.36
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.2
d4fiva_	113	Feline immunodeficiency virus (FIV) protease {Feli	97.15
d1nsoa_	107	Mason-Pfizer monkey virus protease {Simian retrovi	97.08
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.82
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.54
d2f4mb1	58	XPC-binding domain of Rad23 homolog B (Hhr23b) {Hu	96.45
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	95.75
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	95.47
d2nmza1	99	Human immunodeficiency virus type 1 protease {Huma	94.81
d3ecga1	99	Human immunodeficiency virus type 2 (HIV-2) protea	94.65
d2rspa_	124	Rous sarcoma virus protease {Rous sarcoma virus, s	94.34
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	94.32
d1hvca_	203	Human immunodeficiency virus type 1 protease {Huma	93.65
d1ryja_	70	Hypothetical protein MTH1743 {Archaeon Methanobact	87.93
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	86.74
d1x3zb1	57	Rad23 STI1 domain {Baker's yeast (Saccharomyces ce	86.72
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	85.83
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	85.79
d1hvca_	203	Human immunodeficiency virus type 1 protease {Huma	84.04
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	80.5

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-20  Score=144.48  Aligned_cols=75  Identities=28%  Similarity=0.377  Sum_probs=72.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|++++|+|++++||.+||++|+.++|||+++|+|+|+||+|+|+ +||++|||++|++|||+.+...
T Consensus         8 mqI~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~-~tL~~y~I~~~stl~l~~r~~~   82 (87)
T d1wh3a_           8 IQVFVKN-PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             EEEEEEE-TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSS-SBHHHHTCCTTEEEEEEECSCC
T ss_pred             EEEEEEC-CCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCC-CcHHHcCCCCCCEEEEEecCCC
Confidence            8999999 9999999999999999999999999999999999999999999986 9999999999999999988754

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=1.8e-20  Score=138.85  Aligned_cols=72  Identities=25%  Similarity=0.348  Sum_probs=70.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|++ .+|++++++|++++||.+||+.|+.++|+|+++|+|+|+|++|.|+ .||++|||++|++|||+.|
T Consensus         1 M~I~Vk~-~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~-~tL~~y~I~~~sti~lvlr   72 (73)
T d1bt0a_           1 MLIKVKT-LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADD-KTAKDYNIEGGSVLHLVLA   72 (73)
T ss_dssp             CEEEEEC-TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCC-CcHHHcCCCCCCEEEEEee
Confidence            9999999 9999999999999999999999999999999999999999999996 9999999999999999875

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.4e-20  Score=140.14  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=71.2

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|++++++|++++||.+||++|+.++|||+++|+|+|+|+.|.|+ +||++|||++|++|||+.+..
T Consensus         3 M~I~Vk~-~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~-~tL~~y~I~~~sti~lv~R~r   76 (78)
T d2zeqa1           3 MIVFVRF-NSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNH-LTVQNCDLEQQSIVHIVQRPR   76 (78)
T ss_dssp             EEEEEES-SSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTT-CBGGGSSCCTTCEEEEEESSC
T ss_pred             eEEEEEc-CCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCC-CCHHHcCCCCCCEEEEEeccC
Confidence            8999999 8999999999999999999999999999999999999999999996 999999999999999998764

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.1e-20  Score=147.57  Aligned_cols=77  Identities=39%  Similarity=0.630  Sum_probs=70.2

Q ss_pred             CEEEEEeC---CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQ---HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~---~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|||.+.   .++.+|+|+|++++||.+||++|+.++|||+++|+|+|+||.|.|+.+||++|||++||+|+|+.+...
T Consensus         8 m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~~~   87 (102)
T d1v5oa_           8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV   87 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred             EEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECCCC
Confidence            89999531   678999999999999999999999999999999999999999976558999999999999999887654

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.8e-20  Score=137.51  Aligned_cols=73  Identities=29%  Similarity=0.337  Sum_probs=70.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|++++++|++++||.+||++|+.++|+|+++|+|+|+|++|+|+ .||++|||++|++|+|+.+.
T Consensus         1 MqI~Vk~-l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~-~tL~~y~i~~~s~I~L~~rl   73 (76)
T d1ogwa_           1 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL   73 (76)
T ss_dssp             CEEEEEE-TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEECT
T ss_pred             CEEEEEc-CCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCC-CCHHHcCCCCCCEEEEEEec
Confidence            9999999 9999999999999999999999999999999999999999999996 99999999999999998875

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.5e-20  Score=136.69  Aligned_cols=72  Identities=15%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|++ .+|++++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.|
T Consensus         4 ~qi~Vk~-~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~-~tL~~y~I~~~sti~l~lR   75 (76)
T d1z2ma2           4 LSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLR   75 (76)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEc-CCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEEe
Confidence            7999999 9999999999999999999999999999999999999999999996 9999999999999999875

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=135.86  Aligned_cols=73  Identities=16%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCCe-EEEEE-eCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNE-CFLLD-VSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~-~~~le-V~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|+ +++++ |++++||++||++|+.++|||+++|+|+|+|+.|.|+ +||++|||++|++|||+.|.
T Consensus         1 M~I~Vkt-l~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRT-MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEE-TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEe-CCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCC-CcHHHcCCCCCCEEEEEEEc
Confidence            9999999 8884 88986 9999999999999999999999999999999999996 99999999999999999874

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.8e-19  Score=138.73  Aligned_cols=75  Identities=23%  Similarity=0.418  Sum_probs=70.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhC---CCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSG---YPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~g---Ip~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+|++ .+|++|+|+|++++||.+||++|+.+.|   +|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.+.
T Consensus         1 M~I~vk~-~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~-~tL~~y~I~~~s~i~lv~~~~~   78 (95)
T d1uela_           1 MQVTLKT-LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDD-TALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEE-TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTT-SBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEe-CCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCC-CcHHHcCCCCCCEEEEEECCCC
Confidence            9999999 9999999999999999999999999875   899999999999999996 9999999999999999887644

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.8e-19  Score=134.73  Aligned_cols=73  Identities=18%  Similarity=0.150  Sum_probs=68.8

Q ss_pred             CEEEEEeCCCC-eEEEE-EeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTN-ECFLL-DVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g-~~~~l-eV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+| +++++ +|++++||++||++|+.++|||+++|+|+|+|++|.|+ +||++|||++|++|||+.|+
T Consensus         1 M~I~Vk~-l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~-~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRT-IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEE-TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSS-SBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEe-CCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCC-CCHHHcCCCCCCEEEEEEcc
Confidence            9999999 887 67887 59999999999999999999999999999999999996 99999999999999999874

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-19  Score=135.57  Aligned_cols=74  Identities=15%  Similarity=0.077  Sum_probs=70.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+|++++++|++++||.+||++|+.++|+|+++|+|+|+|+.|.|+ .||++|||++|++|||+.+.+
T Consensus         4 ~qi~Vk~-~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~-~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           4 CQLRLRL-STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDK-MKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             EEEEEEE-TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTT-SHHHHCCCSSSCEEEEECCCS
T ss_pred             EEEEEEc-CCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCC-CcHHHcCCCCCCEEEEEecCC
Confidence            6899999 9999999999999999999999999999999999999999999986 999999999999999987754

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.2e-20  Score=136.51  Aligned_cols=72  Identities=22%  Similarity=0.386  Sum_probs=68.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .+|++++++|++++||++||+.|+.++|+|+++|+|+|+|+.|+|+ +||++||| +|++|||+.+.
T Consensus         1 m~I~Vk~-~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~-~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEEC-TTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSS-SBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEc-CCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCC-CCHHHhCC-CCCEEEEEecC
Confidence            8999999 9999999999999999999999999999999999999999999996 99999999 58999998775

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.1e-19  Score=131.52  Aligned_cols=71  Identities=21%  Similarity=0.407  Sum_probs=66.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|++  .++.|+++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ .||++|||++|++|||+.+
T Consensus         2 i~I~Vk~--~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEE--TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEe--CCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCC-CcHHHCCCCCCCEEEEEee
Confidence            6889988  466799999999999999999999999999999999999999996 8999999999999999875

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=3.8e-19  Score=131.83  Aligned_cols=71  Identities=18%  Similarity=0.267  Sum_probs=68.3

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|++ ..|++++++|++++||.+||+.|+.++|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|..
T Consensus         2 i~i~vk~-~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~-~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVND-RLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDH-ISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEE-TTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTT-SBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEEC-CCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEeccc-CcHHHcCCCCCCEEEEEE
Confidence            6899999 9999999999999999999999999999999999999999999996 899999999999999863

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=129.65  Aligned_cols=72  Identities=26%  Similarity=0.350  Sum_probs=68.9

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE--CCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF--QGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~--~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +|+|++ .+|+.++++|++++||.+||+.|+.++|||+++|+|+|  +|+.|.|+ .||++|||++|++|+|+.+.
T Consensus         2 ~l~Vk~-l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~-~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           2 DLTVKM-LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDR-VPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             EEEEEE-SSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSS-SCSGGGTCCTTCEEEEEECC
T ss_pred             EEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCC-CcHHHcCCCCCCEEEEEEEC
Confidence            799999 99999999999999999999999999999999999999  69999996 99999999999999998764

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.5e-19  Score=131.30  Aligned_cols=71  Identities=18%  Similarity=0.394  Sum_probs=67.7

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhC---CCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSG---YPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~g---Ip~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      |+|+|++ .+|+.|+++|++++||++||+.|+.+.|   +|+++|+|+|+|+.|.|+ +||++|||++|++|+++.
T Consensus         3 ~~i~vk~-l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~-~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           3 VTITLKT-LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCEEEEE-TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSS-SBTTTTCCCTTSCEEEEE
T ss_pred             EEEEEEC-CCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCC-CcHHHcCCCCCCEEEEEE
Confidence            8999999 9999999999999999999999999987   999999999999999986 999999999999998864

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.3e-18  Score=132.18  Aligned_cols=73  Identities=23%  Similarity=0.298  Sum_probs=67.9

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|++ .+ ..++++|++++||.+||++|++++|+|++.|+|+|+|+.|+|+ .||++|||++|++|+|+.+..
T Consensus         8 i~I~Vkt-~~-~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~-~tL~~y~i~~gsti~lv~r~~   80 (84)
T d1yqba1           8 IKVTVKT-PK-DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIKRQ   80 (84)
T ss_dssp             EEEEEEC-SS-CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBHHHHTCCTTCEEEEEECCC
T ss_pred             EEEEEEc-CC-CcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeecccc-CcHHHcCCCCCCEEEEEECCC
Confidence            6899999 54 4689999999999999999999999999999999999999986 899999999999999998764

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=5.5e-19  Score=139.93  Aligned_cols=76  Identities=18%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeE---------------EEECCeecCCCcccccccCCCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIA---------------IEFQGVLLQDNKKTLKTHGIQD   65 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~---------------Li~~Gk~L~D~~~TL~~~gI~d   65 (302)
                      |+|+|++ .+|+.++|+|+++.||.+||++|+..+|||+++|+               |+|+|+.|.|+..||++|||++
T Consensus         8 M~v~Vk~-~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~   86 (105)
T d1v2ya_           8 MTVRVCK-MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN   86 (105)
T ss_dssp             EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred             EEEEEEe-CCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCC
Confidence            8999999 99999999999999999999999999999999998               9999999987657999999999


Q ss_pred             CCEEEEEEecCC
Q psy15482         66 GDLVLLKHLGSY   77 (302)
Q Consensus        66 gd~l~L~~~~~~   77 (302)
                      ||+|||+.+...
T Consensus        87 g~~l~lv~r~~~   98 (105)
T d1v2ya_          87 RDEVSFIKKLGQ   98 (105)
T ss_dssp             SEEEEEEECSCS
T ss_pred             CCEEEEEEecCC
Confidence            999999987654

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2.4e-17  Score=128.17  Aligned_cols=73  Identities=16%  Similarity=0.141  Sum_probs=67.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+||+ ++|+.+.|+|++++||.+||.+|+   .+++++|+|+|+|++|.|+.+||++|||++|++|||+.+.+.
T Consensus         8 m~i~vK~-l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~   80 (95)
T d1wiaa_           8 INVRLKF-LNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             EEEEEEE-TTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             EEEEEEc-CCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCC
Confidence            8999999 999999999999999999999986   568899999999999986568999999999999999877654

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-17  Score=131.13  Aligned_cols=71  Identities=31%  Similarity=0.385  Sum_probs=66.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |+|+|++ .++ .++|+|++++||.+||++|+..+|+|++.|+|+|+|++|.|+ .||++|||++|++|||+.|
T Consensus        33 i~V~Vk~-~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~-~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          33 IKVTVKT-PKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             EEEEEEC-SSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTT-SCGGGTTCSSSEEEEEEEC
T ss_pred             EEEEEEC-CCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCC-CcHHHcCCCCCCEEEEEEC
Confidence            6889988 555 589999999999999999999999999999999999999986 8999999999999999864

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.6e-17  Score=129.29  Aligned_cols=74  Identities=19%  Similarity=0.147  Sum_probs=67.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      |+|+||. .+++.++|+|++++||.+||++|+..+|||+++|+|+|+|+.|+|+  ||++|||++|++|+|+.+...
T Consensus         8 ~~I~VK~-~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~--tL~~~gi~~g~~i~lv~t~~~   81 (96)
T d1wgga_           8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGNIKMKNGMTVLMMGSADA   81 (96)
T ss_dssp             EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS--CCCSCCCCSSCEEECCCCCCC
T ss_pred             eEEEEEe-CCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC--cHHHCCCCCCCEEEEEeeCCc
Confidence            5788998 7777789999999999999999999999999999999999999874  799999999999999876544

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=4.6e-18  Score=128.81  Aligned_cols=72  Identities=25%  Similarity=0.395  Sum_probs=66.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|+|++ .++ .++++|++++||.+||+.|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.|.
T Consensus        11 i~v~Vk~-~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~-~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1          11 IRVSVKT-PQD-CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             EEEEEEC-SSS-EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTT-SCHHHHTCCTTEEEECCBCC
T ss_pred             EEEEEEc-CCC-cEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccC-CcHHHcCCCCCCEEEEEEeC
Confidence            6899998 554 579999999999999999999999999999999999999996 89999999999999998764

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=9.8e-18  Score=131.60  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      ++|+|++ ..|+.++|+|+|++||.+||++|+..+|+|+++|+|+|+|++|+|+ .||++|||++|++|+|..
T Consensus        29 i~V~V~~-~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          29 IEVVCND-RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDH-VSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEEC-SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSS-CBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEEC-CCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCc-CCHHHcCCCCCCEEEEEE
Confidence            3788988 8899999999999999999999999999999999999999999996 999999999999999964

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.9e-17  Score=123.96  Aligned_cols=73  Identities=30%  Similarity=0.369  Sum_probs=65.7

Q ss_pred             CEEEEEeCCCCeEEEEEe-----CCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          1 MKVTVSTQHTNECFLLDV-----SEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV-----~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |.|+|+.  .++.|+++|     ++++||++||++|+..+|+|+++|+|+|+|+.|.|+++||++|||++|++|+|+.+.
T Consensus         2 i~i~V~~--~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           2 LTVTVTH--SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             EEEEEEC--SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             EEEEEEE--CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            5677755  788888888     468999999999999999999999999999999765689999999999999999875

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-16  Score=121.77  Aligned_cols=66  Identities=14%  Similarity=0.328  Sum_probs=63.1

Q ss_pred             CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      ++|++++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+ +||++|||++|++|||+.|.
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~-~tL~dY~I~~gsti~l~~r~   84 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMANGAVIHLALKE   84 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTT-SBHHHHTCCTTEEEEEEESC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCC-CCHHHcCCCCCCEEEEEEec
Confidence            5799999999999999999999999999999999999999999996 99999999999999998774

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.5e-16  Score=122.13  Aligned_cols=74  Identities=12%  Similarity=0.192  Sum_probs=67.3

Q ss_pred             CEEEEEeCCCCeEEEE-EeCCCccHHHHHHHHHhhhCCCCCCeEEE---ECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLL-DVSEDLELENFKAFCEVQSGYPAHEIAIE---FQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~l-eV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li---~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|+.  .++.+.+ +|++++||.+||++|+.++|+|+++|+|+   |.|++|+|+ .+|++|||++|++|+|+.++.
T Consensus         8 ~~i~Vk~--~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~-~tL~~~~i~~g~~i~lv~s~~   84 (90)
T d1v5ta_           8 LPIIVKW--GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND-VKLGALKLKPNTKIMMMGTRE   84 (90)
T ss_dssp             CCEEEEE--TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTT-SBHHHHTCCTTEEEEEECCCS
T ss_pred             EEEEEEE--CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCc-CcHHHcCCCCCCEEEEEeeCC
Confidence            7899988  6677777 79999999999999999999999999999   589999996 899999999999999987764


Q ss_pred             C
Q psy15482         77 Y   77 (302)
Q Consensus        77 ~   77 (302)
                      .
T Consensus        85 ~   85 (90)
T d1v5ta_          85 S   85 (90)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=6.5e-16  Score=124.12  Aligned_cols=74  Identities=14%  Similarity=0.119  Sum_probs=67.0

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHH--------HhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCE--EE
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFC--------EVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDL--VL   70 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~I--------e~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~--l~   70 (302)
                      |+|+|++ .+|+.++++|+|++||.+||++|        +++.|+|+++|||+|.||.|.|+ .||++|+|++|++  ||
T Consensus        17 i~i~v~~-l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~-~tL~~~~i~~g~~~~lh   94 (116)
T d1wgha_          17 INLRLIL-VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMH   94 (116)
T ss_dssp             EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSS-CBTTTTTCCSSCEEEEE
T ss_pred             EEEEEEE-cCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCC-CCHHHcCCCCCCEEEEE
Confidence            5788888 89999999999999999999999        57789999999999999999996 9999999999997  66


Q ss_pred             EEEecC
Q psy15482         71 LKHLGS   76 (302)
Q Consensus        71 L~~~~~   76 (302)
                      |+.+..
T Consensus        95 lv~r~~  100 (116)
T d1wgha_          95 LVARET  100 (116)
T ss_dssp             EEECSS
T ss_pred             EEeCCC
Confidence            776653

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=8.2e-16  Score=120.55  Aligned_cols=74  Identities=11%  Similarity=0.126  Sum_probs=67.4

Q ss_pred             CEEEEEeCCCCeEE-EEEeCCCccHHHHHHHHHhh-----hCCC--CCCeEEEECCeecCCCcccccccCCCCCC-----
Q psy15482          1 MKVTVSTQHTNECF-LLDVSEDLELENFKAFCEVQ-----SGYP--AHEIAIEFQGVLLQDNKKTLKTHGIQDGD-----   67 (302)
Q Consensus         1 MqItV~~~~~g~~~-~leV~~~~TV~dLK~~Ie~e-----~gIp--~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd-----   67 (302)
                      |+|+|++ .+|+.+ ++.|++++||.+||++|+..     .|+|  +++|||+|+||+|.|+ +||++|+|.+|+     
T Consensus         8 i~I~~r~-~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~-~tL~dy~i~~g~~~~~~   85 (101)
T d1se9a_           8 LEIKFRL-TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENS-KTVKDYRSPVSNLAGAV   85 (101)
T ss_dssp             EEEEEEE-TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTT-SBGGGGSCCTTSCTTCC
T ss_pred             EEEEEEe-CCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCC-CCHHHcCCCCCCcCCCc
Confidence            6799999 888765 79999999999999999875     7898  7899999999999996 999999999998     


Q ss_pred             -EEEEEEecC
Q psy15482         68 -LVLLKHLGS   76 (302)
Q Consensus        68 -~l~L~~~~~   76 (302)
                       ++||+.+++
T Consensus        86 ~tmHlVvrpp   95 (101)
T d1se9a_          86 TTMHVIIQAP   95 (101)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEeCCC
Confidence             999999864

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.4e-16  Score=122.29  Aligned_cols=72  Identities=14%  Similarity=0.230  Sum_probs=64.6

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |.|+|+  .+++.|+|+|+++.||.+||++|+..+|||+++|+|+|+|+ |.|+ .||++|||++|++|+|+.+..
T Consensus        18 i~v~V~--~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~-~tL~~~~I~~gs~i~lvgs~~   89 (95)
T d1v86a_          18 VDLKII--WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPED-KTLREIKVTSGAKIMVVGSTI   89 (95)
T ss_dssp             EEEEEE--ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSS-SBHHHHCCCTTEEEEECCSSC
T ss_pred             EEEEEE--ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCC-CcHHHCCCCCCCEEEEEecCC
Confidence            345555  48999999999999999999999999999999999999997 8886 899999999999999986653

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.1e-16  Score=123.79  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             CEEEEEeC-CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482          1 MKVTVSTQ-HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS   76 (302)
Q Consensus         1 MqItV~~~-~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~   76 (302)
                      |+|+|... ..|+.++|+|++++||.+||..|+.+.|+|+++|+|+|+|++|+|+ +||++|||++|++|+++....
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~-~tL~~~gI~~~s~i~vi~~~~   93 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLG-KTLEEQGVAHNVKAMVLELKQ   93 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTT-SBHHHHTCCSSEEEEEECCCC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCC-cCHHHcCCCCCCEEEEEEcCC
Confidence            35555322 5799999999999999999999999999999999999999999996 999999999999999886653

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.62  E-value=2.6e-16  Score=125.52  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             CCCeEEEEEeCC-CccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482          9 HTNECFLLDVSE-DLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY   77 (302)
Q Consensus         9 ~~g~~~~leV~~-~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~   77 (302)
                      .+|++++++|.+ ++||.+||++|+.++|||+++|+|+|.|+.|+|+ .||++|||++|++|+|+.|...
T Consensus        38 ~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~ynI~~gsti~L~lr~rG  106 (111)
T d1we6a_          38 NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDN-MSLAHYNVGAGEILTLSLRERS  106 (111)
T ss_dssp             SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTT-SBTTTTTCSSSCEEEEECSSCC
T ss_pred             CCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEcccc-CCHHHcCCCCCCEEEEEeeCCC
Confidence            469999999987 8999999999999999999999999999999996 9999999999999999988753

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=116.98  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=64.5

Q ss_pred             CEEEEEeCCCC--eEEEEEeCCCccHHHHHHHHHhhhC--CCCCCeEEEECCeecCCCcccccccCCCCCC--EEEEEEe
Q psy15482          1 MKVTVSTQHTN--ECFLLDVSEDLELENFKAFCEVQSG--YPAHEIAIEFQGVLLQDNKKTLKTHGIQDGD--LVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g--~~~~leV~~~~TV~dLK~~Ie~e~g--Ip~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd--~l~L~~~   74 (302)
                      |+|+|++ .++  ..++++|++++||.+||++|+.+.+  +|+++|||+|+||+|.|+ .+|++|+++.++  +|||+.+
T Consensus         8 i~l~Ik~-~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~-~~L~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           8 VTLLVKS-PNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDH-QCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CEEEEEC-SSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSS-SCHHHHSCSSSCSEEEEEECC
T ss_pred             EEEEEEC-CCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCC-CCHHHhCcccCCCCEEEEEec
Confidence            7899998 544  4589999999999999999999965  999999999999999996 999999876555  9999876


Q ss_pred             cC
Q psy15482         75 GS   76 (302)
Q Consensus        75 ~~   76 (302)
                      ..
T Consensus        86 ~~   87 (93)
T d1wgda_          86 VK   87 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=4.7e-15  Score=114.99  Aligned_cols=77  Identities=21%  Similarity=0.218  Sum_probs=67.8

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCee------cCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVL------LQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~------L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |.|+|++++++..+...+++++||.+||++|+..+|+|+++|+|+|.|+.      |.+++++|++|||.+|++|||+.+
T Consensus         8 v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~   87 (95)
T d1v6ea_           8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             EEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeC
Confidence            57899986677778899999999999999999999999999999998873      433359999999999999999988


Q ss_pred             cCC
Q psy15482         75 GSY   77 (302)
Q Consensus        75 ~~~   77 (302)
                      .+.
T Consensus        88 ~p~   90 (95)
T d1v6ea_          88 SGS   90 (95)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            754

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-14  Score=114.67  Aligned_cols=73  Identities=22%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCC-------EEEEEEe
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGD-------LVLLKHL   74 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd-------~l~L~~~   74 (302)
                      +|||+....+.++.|+|++++||.+||++|+..+|||+++|+|+|+|++|.|+ +||++|||.+++       +++|..+
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~-~TL~dYgI~~~~~~~~~~~~~~l~~~   79 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLAFR   79 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBHHHHTCCTTTSBTTBCEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCcccccccCCcEEEEEEe
Confidence            47777744667889999999999999999999999999999999999999996 999999997654       7777765


Q ss_pred             c
Q psy15482         75 G   75 (302)
Q Consensus        75 ~   75 (302)
                      .
T Consensus        80 ~   80 (103)
T d2c9wb1          80 A   80 (103)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=5.5e-14  Score=109.13  Aligned_cols=74  Identities=12%  Similarity=0.328  Sum_probs=63.5

Q ss_pred             EEEEEeC--CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCe-------ecCCCcccccccCCCCCCEEEEE
Q psy15482          2 KVTVSTQ--HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGV-------LLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         2 qItV~~~--~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk-------~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      .|+|+++  .+++.+++.|++++||.+||.+|+..+|||++.|+|+|.|+       .|.++++||.+|||++|++|+|.
T Consensus        11 ti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~   90 (97)
T d1wjna_          11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEE
Confidence            3556653  34778899999999999999999999999999999999887       36656699999999999999987


Q ss_pred             Eec
Q psy15482         73 HLG   75 (302)
Q Consensus        73 ~~~   75 (302)
                      ...
T Consensus        91 ~~~   93 (97)
T d1wjna_          91 WSG   93 (97)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            544

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.36  E-value=1.1e-12  Score=97.66  Aligned_cols=73  Identities=10%  Similarity=0.246  Sum_probs=67.1

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +|+|+...+|..+.+.|.+++++..||..++++.|+|+++++|+|+|+.|.++ .|+++|||++||+|+++.+.
T Consensus         4 ~I~ikv~~~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~-~T~~~~~i~dgd~I~v~~~q   76 (79)
T d1euvb_           4 HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQ   76 (79)
T ss_dssp             EEEEEEESSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred             EEEEEECCCCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCC-CCHHHCCCCCCCEEEEEEec
Confidence            57777655778888999999999999999999999999999999999999986 89999999999999998764

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.35  E-value=1.7e-12  Score=99.28  Aligned_cols=75  Identities=20%  Similarity=0.264  Sum_probs=63.2

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCe------ecCCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGV------LLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk------~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      .|.|++..++..+..-+++++||.+||.+|+..+|+|++.|+|+|.|+      .|.|++++|.+|||.||++|||+-+.
T Consensus         6 ~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~~   85 (90)
T d1t0ya_           6 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT   85 (90)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECT
T ss_pred             EEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeCC
Confidence            456666444555667789999999999999999999999999999887      36555699999999999999998875


Q ss_pred             C
Q psy15482         76 S   76 (302)
Q Consensus        76 ~   76 (302)
                      +
T Consensus        86 ~   86 (90)
T d1t0ya_          86 G   86 (90)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=5.2e-12  Score=97.32  Aligned_cols=56  Identities=23%  Similarity=0.288  Sum_probs=49.8

Q ss_pred             CCCccHHHHHHHHHhhh--CCC-CCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482         19 SEDLELENFKAFCEVQS--GYP-AHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus        19 ~~~~TV~dLK~~Ie~e~--gIp-~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      ..+.||.+||++|+.+.  ++| +++|+|+|+||.|+|+ .||++|||++|++|||+.|.
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~-~tL~~y~I~~gstihLV~r~   93 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDD-QTLDFYGIQPGSTVHVLRKS   93 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTT-CBHHHHTCCTTCEEEEEESS
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCC-ccHHHcCCCCCCEEEEEEeC
Confidence            44789999999999885  455 6999999999999996 99999999999999999873

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-11  Score=91.48  Aligned_cols=72  Identities=21%  Similarity=0.315  Sum_probs=66.6

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      .|.|++ .+|+.+.+.|.+++++..|+..++.+.|+|+++++|+|+|+.|.++ .|++++|++|||+|.++.+.
T Consensus         4 ~ikv~~-~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~-~T~~~l~~edgD~Idv~~~q   75 (77)
T d2uyzb1           4 KLKVIG-QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQEQ   75 (77)
T ss_dssp             EEEEEC-TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTEEEEEEECC
T ss_pred             EEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEec
Confidence            566666 7899999999999999999999999999999999999999999986 89999999999999998753

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.49  E-value=1.3e-07  Score=71.51  Aligned_cols=71  Identities=15%  Similarity=0.236  Sum_probs=57.3

Q ss_pred             EEEEeCCCCeEEEEEeC-CCccHHHHHHHHHhhhCCCCCCeEEEEC--------------CeecCCCcccccccCCCCCC
Q psy15482          3 VTVSTQHTNECFLLDVS-EDLELENFKAFCEVQSGYPAHEIAIEFQ--------------GVLLQDNKKTLKTHGIQDGD   67 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~-~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~--------------Gk~L~D~~~TL~~~gI~dgd   67 (302)
                      |.|++  .+-+.-|+|+ ++.||.+||.+|++..+||.++|.|..+              -..|.|+..+|+++||..|+
T Consensus         3 iRiRs--rdG~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGs   80 (94)
T d1wf9a1           3 LRVRS--RDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGS   80 (94)
T ss_dssp             EEEEC--SSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTC
T ss_pred             EEEEe--cCCceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCce
Confidence            45566  4446678886 4789999999999999999999999654              33467776889999999999


Q ss_pred             EEEEEEec
Q psy15482         68 LVLLKHLG   75 (302)
Q Consensus        68 ~l~L~~~~   75 (302)
                      +|+|....
T Consensus        81 ivyL~y~~   88 (94)
T d1wf9a1          81 MVYLAYEG   88 (94)
T ss_dssp             EEECCCSS
T ss_pred             EEEEEeee
Confidence            99997654

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.2e-07  Score=66.36  Aligned_cols=69  Identities=13%  Similarity=0.233  Sum_probs=62.6

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK   72 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~   72 (302)
                      .|+|+. .+|+.+.+.|.+++++..|........|+++...+++|+|..|..+ .|.+++|+++||+|-+.
T Consensus         3 ~lkv~~-~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~-~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           3 NLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEC-TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTT-CCTTTTTCCTTEEEEEE
T ss_pred             EEEEEC-CCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCC-CCHHHcCCCCCCEEEEE
Confidence            355666 6788999999999999999999999999999999999999999886 89999999999999763

>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: EIAV protease
species: Equine infectious anemia virus [TaxId: 11665]

Probab=97.36  E-value=4.9e-05  Score=58.47  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=30.3

Q ss_pred             eeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHH
Q psy15482        213 VVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAER  247 (302)
Q Consensus       213 v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~  247 (302)
                      -.+-.+.++|+|++++|++||||..||++.+--.+
T Consensus         6 ~~RP~~~i~I~Gq~v~~LLDTGAD~TVI~~~~~p~   40 (104)
T d2fmba_           6 EKRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNR   40 (104)
T ss_dssp             SSCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHH
T ss_pred             ccCeEEEEEECCEEEEEEEeCCCCeEEEcccccCc
Confidence            34567889999999999999999999999887654

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00085  Score=48.46  Aligned_cols=71  Identities=11%  Similarity=0.113  Sum_probs=65.4

Q ss_pred             EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482          3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      |+|-+ .+|...+|-|.|++|+.++-+..-.++|+.+++-.|.|++|+|+-. -.+.-.|+.+|..|.|+...
T Consensus         3 V~Vl~-~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLs-l~~R~sgLpnnakLELv~~s   73 (76)
T d2al3a1           3 VSVLA-PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLS-LQWRFANLPNNAKLEMVPVS   73 (76)
T ss_dssp             EEEEC-TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSS-CBHHHHCCCSSCEEEEECSS
T ss_pred             EEEEC-CCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCcc-ceeeecCCCCCCEEEEEEcc
Confidence            67777 8999999999999999999999999999999999999999999774 89999999999999998654

>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Feline immunodeficiency virus (FIV) protease
species: Feline immunodeficiency virus [TaxId: 11673]

Probab=97.15  E-value=0.0001  Score=57.45  Aligned_cols=29  Identities=41%  Similarity=0.584  Sum_probs=26.0

Q ss_pred             EEEEEEEEcCeeEEEEEcCCCccccCCHH
Q psy15482        215 MLYINCKVNGYPVKAFIDSGAQTTIMSLA  243 (302)
Q Consensus       215 mlyi~~~ing~~v~a~vDsGaq~~i~s~~  243 (302)
                      +-.+.++|||+++++|+||||..||++..
T Consensus        10 RP~v~v~I~Gq~v~~LLDTGAD~TVi~~~   38 (113)
T d4fiva_          10 RPEILIFVNGYPIKFLLDTGADITILNRR   38 (113)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEEGG
T ss_pred             CCeEEEEECCEEEEEEEcCCCCcEEEecc
Confidence            45688899999999999999999999864

>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian retrovirus 1, SRV-1 [TaxId: 11942]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Mason-Pfizer monkey virus protease
species: Simian retrovirus 1, SRV-1 [TaxId: 11942]

Probab=97.08  E-value=0.00013  Score=56.31  Aligned_cols=28  Identities=21%  Similarity=0.313  Sum_probs=25.1

Q ss_pred             EEEEEEcCeeEEEEEcCCCccccCCHHH
Q psy15482        217 YINCKVNGYPVKAFIDSGAQTTIMSLAC  244 (302)
Q Consensus       217 yi~~~ing~~v~a~vDsGaq~~i~s~~~  244 (302)
                      .+.|+|+|+++++|+||||..||++..-
T Consensus        11 ~~~v~I~G~~v~~LLDTGAD~TVI~~~~   38 (107)
T d1nsoa_          11 SLTLWLDDKMFTGLINTGADVTIIKLED   38 (107)
T ss_dssp             CEEEEETTEEEEECCCSSCSSCBCCGGG
T ss_pred             EEEEEECCEEEEeeecCCCCcEEEeccc
Confidence            4678899999999999999999998754

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0027  Score=45.84  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC--CCcccccccCCCCCCEEEEEEe
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ--DNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~--D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|-|+. .+|..+.-....++||.+|.+.|+.. +.+.....|+  |-.+.|.  |.++||+++|+.+..+|+|..+
T Consensus         7 ~i~iRl-PdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~~   81 (82)
T d1h8ca_           7 KLRIRT-PSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK   81 (82)
T ss_dssp             EEEEEC-TTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEEC
T ss_pred             EEEEEC-CCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEeC
Confidence            467888 88999999999999999999999874 7778888887  4677884  5558999999999999998654

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.54  E-value=0.0068  Score=44.44  Aligned_cols=68  Identities=10%  Similarity=0.207  Sum_probs=56.2

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhh-hCCCCCCeEEEEC--CeecCCCcccccccCCCCCCEEEE
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQ-SGYPAHEIAIEFQ--GVLLQDNKKTLKTHGIQDGDLVLL   71 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e-~gIp~~~Q~Li~~--Gk~L~D~~~TL~~~gI~dgd~l~L   71 (302)
                      +|-|+. .+|..+......+.+|.+|...|... .+.+.....|+.+  -|.|.|.+.||+++|+.+ ..|.+
T Consensus        16 ~I~iRl-PdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~-s~vl~   86 (89)
T d1i42a_          16 NIQIRL-ADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLN-AVIVQ   86 (89)
T ss_dssp             EEEEEE-TTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCC-SEEEE
T ss_pred             EEEEEc-CCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcC-ceEEE
Confidence            467888 78999999999999999999999876 4677778888865  678888789999999995 55543

>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: XPC-binding domain
superfamily: XPC-binding domain
family: XPC-binding domain
domain: XPC-binding domain of Rad23 homolog B (Hhr23b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.001  Score=45.57  Aligned_cols=45  Identities=27%  Similarity=0.552  Sum_probs=36.7

Q ss_pred             CCCCHH--HHHHHHhcCHH----HHHHHHhcChhHHHHhhcCChHHHHHHHH
Q psy15482        111 LSDDPA--TVRQLLLDNPK----EIALLQQNNPRLADALLNGSPEDFERILR  156 (302)
Q Consensus       111 ~~~npe--~iR~~~l~NP~----~~~~L~~~NPeLa~al~~~d~e~f~~~lr  156 (302)
                      +.++|.  .+|+++.+||+    ++++|.++||+|+++|. .|++.|-++|.
T Consensus         5 Lr~~PqFq~lR~~vq~nP~~L~~lLqql~~~NP~L~q~I~-~nqe~Fl~lln   55 (58)
T d2f4mb1           5 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS-QHQEHFIQMLN   55 (58)
T ss_dssp             GTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHH-HSHHHHHHHHT
T ss_pred             HhcChHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHH-HCHHHHHHHHc
Confidence            356665  78999999985    45667889999999996 58999998874

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.017  Score=44.87  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=58.7

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC--CCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ--DNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~--D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +|-|+. .+|..+......+.||.+|.+.|+.. +.+.....|+  |--+.|.  |.++||+++|+.+..+|+|....
T Consensus        45 ~l~iRl-PdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee~~  120 (124)
T d1wj4a_          45 QLMLRY-PDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESG  120 (124)
T ss_dssp             EEEEEC-TTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECC
T ss_pred             EEEEEC-CCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEecC
Confidence            467888 88999999999999999999999875 4566677776  4566774  55689999999999999987664

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.47  E-value=0.029  Score=41.13  Aligned_cols=72  Identities=10%  Similarity=0.107  Sum_probs=57.0

Q ss_pred             EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE--CCeecC-CCcccccccCCCCCCEEEEEEec
Q psy15482          2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF--QGVLLQ-DNKKTLKTHGIQDGDLVLLKHLG   75 (302)
Q Consensus         2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~--~Gk~L~-D~~~TL~~~gI~dgd~l~L~~~~   75 (302)
                      +|-|+. .+|..+.-....+.||.+|...|... +.......|+.  =.+.+. |.++||+++|+.+..+|+|..+-
T Consensus        18 ~i~iRl-PdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~~d   92 (96)
T d2cr5a1          18 TVALRC-PNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE   92 (96)
T ss_dssp             EEEEEC-TTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred             EEEEEC-CCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEecCC
Confidence            467788 88999888999999999999999765 44556677764  346663 54589999999999999887664

>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=94.81  E-value=0.0099  Score=44.47  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=25.2

Q ss_pred             eEEEEEEEEcCeeEEEEEcCCCccccCC
Q psy15482        214 VMLYINCKVNGYPVKAFIDSGAQTTIMS  241 (302)
Q Consensus       214 ~mlyi~~~ing~~v~a~vDsGaq~~i~s  241 (302)
                      .+-.|.++|.|+.+.||+||||..||+.
T Consensus         7 qRP~vtvkIgGq~~eaLLDTGADdTVle   34 (99)
T d2nmza1           7 KRPLVTIKIGGQLKEALLDTGADDTVIE   34 (99)
T ss_dssp             SCCEEEEEETTEEEEEEECTTCSSCEEE
T ss_pred             CCCeEEEEECCEEEEEeeccCCCceEEe
Confidence            4567899999999999999999999984

>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 2 (HIV-2) protease
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=94.65  E-value=0.012  Score=44.07  Aligned_cols=28  Identities=25%  Similarity=0.542  Sum_probs=25.2

Q ss_pred             eEEEEEEEEcCeeEEEEEcCCCccccCC
Q psy15482        214 VMLYINCKVNGYPVKAFIDSGAQTTIMS  241 (302)
Q Consensus       214 ~mlyi~~~ing~~v~a~vDsGaq~~i~s  241 (302)
                      .+-.|.++|.|+.+.||+||||..||+.
T Consensus         7 qRP~vtvkIgGq~~eaLLDTGADdTVle   34 (99)
T d3ecga1           7 KRPVVTAYIEGQPVEVLLDTGADDSIVA   34 (99)
T ss_dssp             SCCEEEEEETTEEEEEEECTTCSSCEEC
T ss_pred             CCCeEEEEECCEEeeeecccCCCceeee
Confidence            3557899999999999999999999983

>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma virus, strain pr-C [TaxId: 11886]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Rous sarcoma virus protease
species: Rous sarcoma virus, strain pr-C [TaxId: 11886]

Probab=94.34  E-value=0.0035  Score=49.21  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=20.9

Q ss_pred             EEEcCeeEEEEEcCCCccccCCHH
Q psy15482        220 CKVNGYPVKAFIDSGAQTTIMSLA  243 (302)
Q Consensus       220 ~~ing~~v~a~vDsGaq~~i~s~~  243 (302)
                      ++++|+.++||+||||..|||+..
T Consensus        25 ~k~~g~~i~~LLDTGAD~TVI~~~   48 (124)
T d2rspa_          25 VKQRSVYITALLDSGADITIISEE   48 (124)
T ss_dssp             CSCSEEEEEEEECTTCSSCEEETT
T ss_pred             EeeCCEEEEEEEcCCCCeEEEcCC
Confidence            566778899999999999999764

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.32  E-value=0.099  Score=37.27  Aligned_cols=66  Identities=15%  Similarity=0.181  Sum_probs=47.6

Q ss_pred             CEEEEEeC------CCCeEEEEEeCCCccHHHHHHHHHhhhCC-----------CCCCeEEEECCeecCCCcccccccCC
Q psy15482          1 MKVTVSTQ------HTNECFLLDVSEDLELENFKAFCEVQSGY-----------PAHEIAIEFQGVLLQDNKKTLKTHGI   63 (302)
Q Consensus         1 MqItV~~~------~~g~~~~leV~~~~TV~dLK~~Ie~e~gI-----------p~~~Q~Li~~Gk~L~D~~~TL~~~gI   63 (302)
                      |+|+|+.=      .+.....+++++..||.+|...+....+-           .....++..||+...++      +-|
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d------~~L   75 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWD------EEL   75 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTT------CBC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCC------cCc
Confidence            88998851      23456789999999999999999876431           22345666788877543      348


Q ss_pred             CCCCEEEEE
Q psy15482         64 QDGDLVLLK   72 (302)
Q Consensus        64 ~dgd~l~L~   72 (302)
                      ++||.|-+.
T Consensus        76 ~~gDevai~   84 (88)
T d1vjka_          76 KDGDVVGVF   84 (88)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEe
Confidence            999999875

>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=93.65  E-value=0.014  Score=48.86  Aligned_cols=28  Identities=21%  Similarity=0.444  Sum_probs=25.2

Q ss_pred             eEEEEEEEEcCeeEEEEEcCCCccccCC
Q psy15482        214 VMLYINCKVNGYPVKAFIDSGAQTTIMS  241 (302)
Q Consensus       214 ~mlyi~~~ing~~v~a~vDsGaq~~i~s  241 (302)
                      .+-.|.++|.|+++.||+||||..||+.
T Consensus         7 qRP~VtVkIgGQ~~eaLLDTGADDTVLe   34 (203)
T d1hvca_           7 QRPLVTIRIGGQLKEALLDTGADDTVLE   34 (203)
T ss_dssp             SCCEEEEESSSCEEEEEECTTCSSEEEE
T ss_pred             CCCeEEEEECCEEEEEEecCCCCceEEe
Confidence            4557899999999999999999999993

>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Hypothetical protein MTH1743
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.93  E-value=2.5  Score=28.54  Aligned_cols=62  Identities=21%  Similarity=0.335  Sum_probs=47.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      |.+|+-+  .+..-.+|.+...++.|+...+    .+|.+.-+.-.||...-+++      .|++||.|.+.+-
T Consensus         5 MtftlI~--kd~~k~~E~~~p~~IkDiL~~l----EipieTvVvK~NG~~Vieee------ei~dgDeieiI~v   66 (70)
T d1ryja_           5 MKFTVIT--DDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE------EIFDGDIIEVIRV   66 (70)
T ss_dssp             EEEEEEE--TTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS------BCCTTCEEEEEEC
T ss_pred             EEEEEEe--cCchhhhhcCCChhHHHHhccc----cccceEEEEecCCcEEechh------hccCCCEEEEEEE
Confidence            5667666  4455568999889988876554    48998888889998875542      6999999988653

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=0.53  Score=34.40  Aligned_cols=59  Identities=15%  Similarity=0.237  Sum_probs=40.7

Q ss_pred             EEEeCCCccHHHHHHHHHhhhCCCCCC----------eEEEECCee--cC-----CCcccccccCCCCCCEEEEEE
Q psy15482         15 LLDVSEDLELENFKAFCEVQSGYPAHE----------IAIEFQGVL--LQ-----DNKKTLKTHGIQDGDLVLLKH   73 (302)
Q Consensus        15 ~leV~~~~TV~dLK~~Ie~e~gIp~~~----------Q~Li~~Gk~--L~-----D~~~TL~~~gI~dgd~l~L~~   73 (302)
                      +++|++++|+.+|-..+.+.-.+....          .+=.|--.+  |.     +-+++|+++|+.+|+.|++.-
T Consensus         4 ~l~~~~~~TL~~li~~L~e~p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~ei~VtD   79 (92)
T d1y8xb1           4 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD   79 (92)
T ss_dssp             CEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred             eEEcCCCCcHHHHHHHHhhChHhhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCEEEEec
Confidence            588999999999999888864333222          222232223  32     223789999999999999864

>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: XPC-binding domain
superfamily: XPC-binding domain
family: XPC-binding domain
domain: Rad23 STI1 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.72  E-value=0.53  Score=30.56  Aligned_cols=44  Identities=25%  Similarity=0.511  Sum_probs=36.1

Q ss_pred             CCCHHHHHHHHhcCHHHH----HHHHhcChhHHHHhhcCChHHHHHHHH
Q psy15482        112 SDDPATVRQLLLDNPKEI----ALLQQNNPRLADALLNGSPEDFERILR  156 (302)
Q Consensus       112 ~~npe~iR~~~l~NP~~~----~~L~~~NPeLa~al~~~d~e~f~~~lr  156 (302)
                      +.|--.+|+.+.+||+.+    +.|..+.|+|++-+.+ ||+.|-.++-
T Consensus         7 ~edl~~lr~vvsg~peal~plle~ls~ryp~lre~im~-npe~fismll   54 (57)
T d1x3zb1           7 VEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMA-NPEVFVSMLL   54 (57)
T ss_dssp             TTHHHHHHHHHHHCGGGHHHHHHHHHTTCHHHHHHHHT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhhHHHHHHHHh-CHHHHHHHHH
Confidence            567778999999999754    4567899999999985 8999988773

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=85.83  E-value=1.3  Score=29.70  Aligned_cols=57  Identities=14%  Similarity=0.250  Sum_probs=45.2

Q ss_pred             CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482         10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL   74 (302)
Q Consensus        10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~   74 (302)
                      +|+.  .++++.+||.+|-+.    .+++.....+-+||..+.-  ..-.+.-+++||.|.++.-
T Consensus         5 Ng~~--~~~~~~~tl~~ll~~----l~~~~~~vaV~vN~~ivpk--~~~~~~~L~~gD~ieIv~~   61 (65)
T d1zud21           5 NDQA--MQCAAGQTVHELLEQ----LDQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQV   61 (65)
T ss_dssp             TTEE--ECCCTTCBHHHHHHH----HTCCCTTEEEEETTEECCG--GGTTTCBCCTTCEEEEEEC
T ss_pred             CCEE--EEcCCCCcHHHHHHH----cCCCCCcEEEEECCEEcCH--HHHhhccCCCCCEEEEEEE
Confidence            4554  456788999998764    5788888888999999864  4677888999999998753

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=0.68  Score=33.10  Aligned_cols=46  Identities=9%  Similarity=0.196  Sum_probs=39.1

Q ss_pred             CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC
Q psy15482          1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ   47 (302)
Q Consensus         1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~   47 (302)
                      |-.+||. .-.-++.+++.+..+..+|.++|.++...+++.-+|.|.
T Consensus         4 ~~~~vkV-h~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_           4 MAYTLKV-HYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SCEEEEE-ESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             CCEEEEE-EEEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            3345555 446778899999999999999999999999999999995

>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=84.04  E-value=0.31  Score=40.38  Aligned_cols=49  Identities=24%  Similarity=0.468  Sum_probs=37.2

Q ss_pred             CcceeeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhcccccee-cccC
Q psy15482        209 TFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIA-KGVG  266 (302)
Q Consensus       209 ~f~~v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a-~gvg  266 (302)
                      -+....+..|.++|.|+...||+||||..||+     |..+|.    -||+..- -|+|
T Consensus       106 ~i~~wqrp~vt~ki~gq~~ealldtgaddtv~-----e~~~lp----grwkpk~iggig  155 (203)
T d1hvca_         106 QITLWQRPLVTIKIGGQLKEALLDTGADDTVL-----EEMSLP----GRWKPKMIGGIG  155 (203)
T ss_dssp             EECSSSCCEEEEEETTEEEEEEECTTCSSCEE-----ESCCCS----SCCEEEEEEETT
T ss_pred             ceeecccceEEEecchhHHHHHhcccCCceEE-----ecccCC----CCCcceEEEEec
Confidence            45677788999999999999999999999998     344443    4565433 3555

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.50  E-value=4.5  Score=29.08  Aligned_cols=71  Identities=14%  Similarity=0.067  Sum_probs=43.1

Q ss_pred             CEEEEEeCCC--------CeEEEEEeC---CCccHHHHHHHHHhhhCCCCCC-----------eEEEECCeecCCCcccc
Q psy15482          1 MKVTVSTQHT--------NECFLLDVS---EDLELENFKAFCEVQSGYPAHE-----------IAIEFQGVLLQDNKKTL   58 (302)
Q Consensus         1 MqItV~~~~~--------g~~~~leV~---~~~TV~dLK~~Ie~e~gIp~~~-----------Q~Li~~Gk~L~D~~~TL   58 (302)
                      |+|+|+. ..        .+.+.++++   ...||.+|-..+.....-....           ..++.||+..... .. 
T Consensus         5 m~V~V~F-~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~~l-~g-   81 (101)
T d1xo3a_           5 LCVKVEF-GGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL-GE-   81 (101)
T ss_dssp             CEEEEEE-CSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHHHH-TT-
T ss_pred             eEEEEEE-echHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCcceecc-CC-
Confidence            7889886 22        234456654   3479999999888875532221           2344566543210 00 


Q ss_pred             cccCCCCCCEEEEEEe
Q psy15482         59 KTHGIQDGDLVLLKHL   74 (302)
Q Consensus        59 ~~~gI~dgd~l~L~~~   74 (302)
                      -++-|++||.|.+...
T Consensus        82 l~t~l~dgDeV~~~p~   97 (101)
T d1xo3a_          82 LDYQLQDQDSILFIST   97 (101)
T ss_dssp             TSCCCCTTCEEEEEET
T ss_pred             CccCcCCCCEEEEeCC
Confidence            1567999999998753