Psyllid ID: psy15893

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MGMSESDSSSLGSMELEGEGAGGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDLYRQEVTQLKCDKLDLLRQNVVSRL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccEccc
Coil and Loop (DISEMBL)
mgmsesdssslgsmelegegaggvyidsdtglesmssaetpskpcglcmdgnasdlYRQEVTQLKCDKLDLLRQNVVSRL
Flexible Loop (DISEMBL)
mgmsesdssslgsMELEGEGAGGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDLYRQEVTqlkcdkldllrqnvvsrl
Low Complexity Region (SEG)
mgmsesdssslgsmelegegaggVYIDSDTGLESMSSAETPSKPCGLCMDGNASDLYRQEVTQLKCDKLDLLRQNVVSRL
Disordered region (IsUnstruct)
*********************************************GLCMDGNASDLYRQEVTQLKCDKLDLLR*******
Disordered Region (DISOPRED)
***************************************************NASDLYRQEVTQLKCDKLDLLRQNVVSR*
Disordered Region (DISEMBL)
***************LEGEGAGGVYIDSDTGL**********KPCGLCMDGNASDLYRQEVTQLKCDKLDLLRQNVVSRL
Disordered Region (DISPRO)
***************LEG*GA***********************CGLCMDGNASDLYRQEVTQLKCDKLDLLRQNVVSRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGMSESDSSSLGSMELEGEGAGGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDLYRQEVTQLKCDKLDLLRQNVVSRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
91088399	741	PREDICTED: similar to Rapgap1 CG34374-PF	0.925	0.099	0.602	1e-14
62471623	876	Rapgap1, isoform F [Drosophila melanogas	0.937	0.085	0.547	2e-14
270012194	722	hypothetical protein TcasGA2_TC006305 [T	0.925	0.102	0.602	2e-14
161076782	933	Rapgap1, isoform D [Drosophila melanogas	0.937	0.080	0.547	2e-14
442626615	959	Rapgap1, isoform H [Drosophila melanogas	0.937	0.078	0.547	2e-14
195577317	1051	GD22487 [Drosophila simulans] gi|1941905	0.937	0.071	0.547	2e-14
66771639	711	RE67551p [Drosophila melanogaster]	0.937	0.105	0.547	2e-14
195338941	849	GM13529 [Drosophila sechellia] gi|194129	0.937	0.088	0.547	3e-14
194762284	856	GF14020 [Drosophila ananassae] gi|190616	0.937	0.087	0.547	3e-14
62471621	850	Rapgap1, isoform E [Drosophila melanogas	0.937	0.088	0.547	3e-14

>gi|91088399|ref|XP_972896.1| PREDICTED: similar to Rapgap1 CG34374-PF [Tribolium castaneum]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 59/83 (71%), Gaps = 9/83 (10%)

Query: 2   GMSE-SDSSSLGSMELEGEGAGGVYIDSDTGLESMSSAETPSKPCGLCMD-------GNA 53
            MSE SD SSL S +LE   AGG YIDSDTGLESMSSAET +K C +C +        ++
Sbjct: 614 AMSEASDDSSLTSEDLEEHLAGG-YIDSDTGLESMSSAETAAKACSVCQERPTSTTGPSS 672

Query: 54  SDLYRQEVTQLKCDKLDLLRQNV 76
           S++  QEV +LKCDKLDLLRQNV
Sbjct: 673 SEVLAQEVAKLKCDKLDLLRQNV 695

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62471623|ref|NP_001014479.1| Rapgap1, isoform F [Drosophila melanogaster] gi|61678292|gb|AAX52662.1| Rapgap1, isoform F [Drosophila melanogaster]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 20/95 (21%)

Query: 3   MSE-SDSSSLGSMELEGEGA----GGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDL- 56
           MSE SD SSL S++L+   A    G  YIDSDTGLESMSSAE  +K C LC+DG  S + 
Sbjct: 732 MSETSDDSSLNSVDLDPMMAHLDGGATYIDSDTGLESMSSAEATTKACSLCLDGVQSTIM 791

Query: 57  --------------YRQEVTQLKCDKLDLLRQNVV 77
                          RQEVT+LKCDKLDLLRQNV 
Sbjct: 792 GSSPSNETIVKIENLRQEVTRLKCDKLDLLRQNVT 826

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012194|gb|EFA08642.1| hypothetical protein TcasGA2_TC006305 [Tribolium castaneum]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 59/83 (71%), Gaps = 9/83 (10%)

Query: 2   GMSE-SDSSSLGSMELEGEGAGGVYIDSDTGLESMSSAETPSKPCGLCMD-------GNA 53
            MSE SD SSL S +LE   AGG YIDSDTGLESMSSAET +K C +C +        ++
Sbjct: 595 AMSEASDDSSLTSEDLEEHLAGG-YIDSDTGLESMSSAETAAKACSVCQERPTSTTGPSS 653

Query: 54  SDLYRQEVTQLKCDKLDLLRQNV 76
           S++  QEV +LKCDKLDLLRQNV
Sbjct: 654 SEVLAQEVAKLKCDKLDLLRQNV 676

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161076782|ref|NP_652556.2| Rapgap1, isoform D [Drosophila melanogaster] gi|442626617|ref|NP_001260208.1| Rapgap1, isoform I [Drosophila melanogaster] gi|157400105|gb|AAF52528.2| Rapgap1, isoform D [Drosophila melanogaster] gi|440213512|gb|AGB92744.1| Rapgap1, isoform I [Drosophila melanogaster]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 20/95 (21%)

Query: 3   MSE-SDSSSLGSMELEGEGA----GGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDL- 56
           MSE SD SSL S++L+   A    G  YIDSDTGLESMSSAE  +K C LC+DG  S + 
Sbjct: 789 MSETSDDSSLNSVDLDPMMAHLDGGATYIDSDTGLESMSSAEATTKACSLCLDGVQSTIM 848

Query: 57  --------------YRQEVTQLKCDKLDLLRQNVV 77
                          RQEVT+LKCDKLDLLRQNV 
Sbjct: 849 GSSPSNETIVKIENLRQEVTRLKCDKLDLLRQNVT 883

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442626615|ref|NP_001097114.2| Rapgap1, isoform H [Drosophila melanogaster] gi|440213511|gb|ABV53642.2| Rapgap1, isoform H [Drosophila melanogaster]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 20/95 (21%)

Query: 3   MSE-SDSSSLGSMELEGEGA----GGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDL- 56
           MSE SD SSL S++L+   A    G  YIDSDTGLESMSSAE  +K C LC+DG  S + 
Sbjct: 815 MSETSDDSSLNSVDLDPMMAHLDGGATYIDSDTGLESMSSAEATTKACSLCLDGVQSTIM 874

Query: 57  --------------YRQEVTQLKCDKLDLLRQNVV 77
                          RQEVT+LKCDKLDLLRQNV 
Sbjct: 875 GSSPSNETIVKIENLRQEVTRLKCDKLDLLRQNVT 909

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195577317|ref|XP_002078517.1| GD22487 [Drosophila simulans] gi|194190526|gb|EDX04102.1| GD22487 [Drosophila simulans]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 20/95 (21%)

Query: 3   MSE-SDSSSLGSMELEGEGA----GGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDL- 56
           MSE SD SSL S++L+   A    G  YIDSDTGLESMSSAE  +K C LC+DG  S + 
Sbjct: 744 MSETSDDSSLNSVDLDPMMAHLDGGATYIDSDTGLESMSSAEATTKACSLCLDGVQSTIM 803

Query: 57  --------------YRQEVTQLKCDKLDLLRQNVV 77
                          RQEVT+LKCDKLDLLRQNV 
Sbjct: 804 GSSPSNETIVKIENLRQEVTRLKCDKLDLLRQNVT 838

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66771639|gb|AAY55131.1| RE67551p [Drosophila melanogaster]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 20/95 (21%)

Query: 3   MSE-SDSSSLGSMELEGEGA----GGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDL- 56
           MSE SD SSL S++L+   A    G  YIDSDTGLESMSSAE  +K C LC+DG  S + 
Sbjct: 567 MSETSDDSSLNSVDLDPMMAHLDGGATYIDSDTGLESMSSAEATTKACSLCLDGVQSTIM 626

Query: 57  --------------YRQEVTQLKCDKLDLLRQNVV 77
                          RQEVT+LKCDKLDLLRQNV 
Sbjct: 627 GSSPSNETIVKIENLRQEVTRLKCDKLDLLRQNVT 661

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195338941|ref|XP_002036080.1| GM13529 [Drosophila sechellia] gi|194129960|gb|EDW52003.1| GM13529 [Drosophila sechellia]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 20/95 (21%)

Query: 3   MSE-SDSSSLGSMELEGEGA----GGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDL- 56
           MSE SD SSL S++L+   A    G  YIDSDTGLESMSSAE  +K C LC+DG  S + 
Sbjct: 705 MSETSDDSSLNSVDLDPMMAHLDGGATYIDSDTGLESMSSAEATTKACSLCLDGVQSTIM 764

Query: 57  --------------YRQEVTQLKCDKLDLLRQNVV 77
                          RQEVT+LKCDKLDLLRQNV 
Sbjct: 765 GSSPSNETIVKIENLRQEVTRLKCDKLDLLRQNVT 799

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762284|ref|XP_001963281.1| GF14020 [Drosophila ananassae] gi|190616978|gb|EDV32502.1| GF14020 [Drosophila ananassae]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 20/95 (21%)

Query: 3   MSE-SDSSSLGSMELEGEGA----GGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDL- 56
           MSE SD SSL S++L+   A    G  YIDSDTGLESMSSAE  +K C LC+DG  S + 
Sbjct: 712 MSETSDDSSLNSVDLDPMMAHLDGGATYIDSDTGLESMSSAEATTKACSLCLDGVQSTIM 771

Query: 57  --------------YRQEVTQLKCDKLDLLRQNVV 77
                          RQEVT+LKCDKLDLLRQNV 
Sbjct: 772 GSSPSNETIVKIENLRQEVTRLKCDKLDLLRQNVT 806

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62471621|ref|NP_001014478.1| Rapgap1, isoform E [Drosophila melanogaster] gi|7297262|gb|AAF52526.1| Rapgap1, isoform E [Drosophila melanogaster]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 20/95 (21%)

Query: 3   MSE-SDSSSLGSMELEGEGA----GGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDL- 56
           MSE SD SSL S++L+   A    G  YIDSDTGLESMSSAE  +K C LC+DG  S + 
Sbjct: 706 MSETSDDSSLNSVDLDPMMAHLDGGATYIDSDTGLESMSSAEATTKACSLCLDGVQSTIM 765

Query: 57  --------------YRQEVTQLKCDKLDLLRQNVV 77
                          RQEVT+LKCDKLDLLRQNV 
Sbjct: 766 GSSPSNETIVKIENLRQEVTRLKCDKLDLLRQNVT 800

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
FB|FBgn0264895	933	RapGAP1 "Rap GTPase activating	0.65	0.055	0.597	2.5e-11

FB|FBgn0264895 RapGAP1 "Rap GTPase activating protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 40/67 (59%), Positives = 44/67 (65%)

Query:    25 YIDSDTGLESMSSAETPSKPCGLCMDGNASDLY---------------RQEVTQLKCDKL 69
             YIDSDTGLESMSSAE  +K C LC+DG  S +                RQEVT+LKCDKL
Sbjct:   816 YIDSDTGLESMSSAEATTKACSLCLDGVQSTIMGSSPSNETIVKIENLRQEVTRLKCDKL 875

Query:    70 DLLRQNV 76
             DLLRQNV
Sbjct:   876 DLLRQNV 882


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        57   0.00091  102 3  11 23  0.36    28
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  425 (45 KB)
  Total size of DFA:  74 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.74u 0.14s 7.88t   Elapsed:  00:00:00
  Total cpu time:  7.74u 0.14s 7.88t   Elapsed:  00:00:00
  Start:  Thu Aug 15 17:02:57 2013   End:  Thu Aug 15 17:02:57 2013

GO:0046582 "Rap GTPase activator activity" evidence=IDA

GO:0032861 "activation of Rap GTPase activity" evidence=IDA

GO:0007265 "Ras protein signal transduction" evidence=ISS

GO:0005099 "Ras GTPase activator activity" evidence=ISS

GO:0002121 "inter-male aggressive behavior" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
KOG3686|consensus	740		96.51

>KOG3686|consensus

Probab=96.51  E-value=0.00065  Score=59.04  Aligned_cols=77  Identities=13%  Similarity=0.056  Sum_probs=59.6

Q ss_pred             CCCCCCCC-CCCcccccCCCC----CCccccCCccccccccCCCC----CCCcccccCCC---------------chHHH
Q psy15893          2 GMSESDSS-SLGSMELEGEGA----GGVYIDSDTGLESMSSAETP----SKPCGLCMDGN---------------ASDLY   57 (80)
Q Consensus         2 ~~~~sD~S-Sl~S~dl~~~~~----~~~~~DSDTGlESMSSae~~----~~~Cs~C~d~~---------------~~e~L   57 (80)
                      +++..+.. ....++.++.++    ++.++++++|+++|++.+.+    ++.|..|....               ..+.+
T Consensus       597 ~~~r~~~~~~~fhv~~e~~~~~~e~~~~~~~a~lg~~~~~~~~~~~~Tla~~~~~~l~~~s~~v~~~~~~~~d~~~~r~~  676 (740)
T KOG3686|consen  597 ALYRADAEAVGFHVSTEGNGDVQEKWKHAGNAELGSRENTRKKYTRETLATKFCDVLLVLSQVVDKMVRPPVDTASPREF  676 (740)
T ss_pred             eecccccccccceecccccceeeccccccccccccceeeeehhhhhhhhhhhhhhhhhhhhhccceeecCcccccchhhc
Confidence            45553333 344677776554    78889999999999999988    46777776432               35999


Q ss_pred             HHHHHHhhchhHHHhhhhcccc
Q psy15893         58 RQEVTQLKCDKLDLLRQNVVSR   79 (80)
Q Consensus        58 ~~eV~rLk~dKldLLrQNVscq   79 (80)
                      +.|+++|++.+++++ ||++|+
T Consensus       677 ~~e~~~l~~~e~~~~-~~~~~~  697 (740)
T KOG3686|consen  677 CPEFDGLTMSELSQL-RLTVIN  697 (740)
T ss_pred             ccccCcccccccchh-cCCccc
Confidence            999999999999999 888886

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00