Psyllid ID: psy16044

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
Protein Sequence
MINLCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIAVDEY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEccccccccccccEEEEEEcccccccccEEEEEEEEcccEEEEcccccccccccccccccEEEEEcEEccccccccEEEEcccEEEEccccccccccEEEEEEccccccccccccEEcccccccccccccccEEEEEccccccccccccccEEEEEEcccHHHHccccccccccccccEEccccccccccccccccccccEEEccccEEEEEEEEEcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEEEEccccccccccccccEEEEEEcccHHHHccccccccccccccEEccccccccccccccccccccEEEccccEEEEEEEEEcccccccccccEEEcccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccHHccccccccccccHcEccEEccccccccEEEEEEEccccccccEEEEEEEEEccEEEEcHHHHcccccccccccEEEEEEEccccccccccEEEEEEEEEEEccccccccccEEEEEEccccEEccccEccEEcccccccccccccEEEEEEccccccccccHHHHEEEEEEEEcHHHHHHHccccccccccEEEEEccccccEccccccccEEEEEcccccEEEEEEEEEccccccccccccEEEHHHHHHHHHEEEcccccccccccccEEEEEEccccEEcccEEEcEEcccccccccccccEEEEEEccccccccccHHHHEEEEEEEEcHHHHHHHccccccccccEEEEEccccccEccccccccEEEEEcccccEEEEEEEEEccccccccccEEEEEcHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
minlcdtvtfardcgvgiryshrqprlingkesirgawpwqVSLQVlhprlglmphwcgavlihpswvVTAAhcihndifslpipelwtavlgdwdrteeeksevripverIRVHEEFHNYHHDIALlklsrptsardkgvravcltdadkrpvnpkqqcvatgwgrvkpkgdlvSKLRqirvplhnisvcrdkygdsvelhgghlcggqldgfsgacigdsggplqcslkdgrwylagitsfgsgycgvgiryshrqprlingkesirgawpwqNLITSFLSAALLKlsrptsardkgvravcltdadkrpvnpkqqcvatgwgrvkpkgdlvSKLRqirvplhnisvcrdkygdsvelhgghlcggqldgfsgacigdsggplqcslkdgrwYLAGITsfgsgcaksgypdvytklsfylPWIRKQINIAVDEY
Flexible Loop (DISEMBL)
minlcdtvtfardcgvgiryshrqprlingkesirgawPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDwdrteeeksevripverIRVHEEFHNYHHDiallklsrptsardKGVRAVcltdadkrpvnpkqqcvatgwgrvkpkgdlvsklrqirvplhnisvCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSrptsardkgVRAVCltdadkrpvnpkqqcvatgwgrvkpkgdlvsklrqirvplhnisvCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSfylpwirkqiniavdey
Low Complexity Region (SEG)
MINLCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIAVDEY
Disordered region (IsUnstruct)
**NLCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPT*ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIAV***
Disordered Region (DISOPRED)
MINLCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDR***********VERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK**N******
Disordered Region (DISEMBL)
MINLCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWD********VRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIAVDEY
Disordered Region (DISPRO)
MINLCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINLCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIAVDEY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	436	2.2.26 [Sep-21-2011]
Q9DBI0	811	Transmembrane protease se	yes	N/A	0.479	0.257	0.390	3e-31
Q5QSK2	417	Transmembrane protease se	yes	N/A	0.488	0.510	0.389	4e-31
Q8BZ10	417	Transmembrane protease se	no	N/A	0.488	0.510	0.394	7e-31
P56677	855	Suppressor of tumorigenic	no	N/A	0.532	0.271	0.356	7e-31
Q7M3E1	268	Chymotrypsin-C OS=Bos tau	no	N/A	0.516	0.839	0.352	1e-30
Q8IU80	811	Transmembrane protease se	yes	N/A	0.479	0.257	0.390	1e-29
Q9JIQ8	490	Transmembrane protease se	no	N/A	0.511	0.455	0.380	2e-29
Q9CR35	263	Chymotrypsinogen B OS=Mus	no	N/A	0.463	0.768	0.378	2e-29
Q3V0Q7	336	Transmembrane protease se	no	N/A	0.529	0.687	0.337	2e-29
Q7RTY8	843	Transmembrane protease se	no	N/A	0.511	0.264	0.374	3e-29

>sp|Q9DBI0|TMPS6_MOUSE Transmembrane protease serine 6 OS=Mus musculus GN=Tmprss6 PE=1 SV=4

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 115/228 (50%), Gaps = 19/228 (8%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R++ G  S  G WPWQ SLQ+         H CG  LI   WV+TAAHC   D  S+  P
Sbjct: 576 RIVGGTVSSEGEWPWQASLQIRGR------HICGGALIADRWVITAAHCFQED--SMASP 627

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVH----EEFHNYHHDIALLKLSRPTSARDKGV 141
           +LWT  LG   +      EV   V R+ +H    E+ H+Y  D+ALL+L  P       V
Sbjct: 628 KLWTVFLGKMRQNSRWPGEVSFKVSRLFLHPYHEEDSHDY--DVALLQLDHPV-VYSATV 684

Query: 142 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
           R VCL  A      P Q C  TGWG  +  G + + L+++ V L    +C + Y    ++
Sbjct: 685 RPVCLP-ARSHFFEPGQHCWITGWGAQREGGPVSNTLQKVDVQLVPQDLCSEAY--RYQV 741

Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
               LC G   G   AC GDSGGPL C    GRW+LAG+ S+G G CG
Sbjct: 742 SPRMLCAGYRKGKKDACQGDSGGPLVCREPSGRWFLAGLVSWGLG-CG 788

Serine protease which hydrolyzes a range of proteins including type I collagen, fibronectin and fibrinogen. Can also activate urokinase-type plasminogen activator with low efficiency (By similarity). May play a specialized role in matrix remodeling processes in liver. Required to sense iron deficiency. Overexpression suppresses activation of the HAMP promoter.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q5QSK2|TM11G_RAT Transmembrane protease serine 11G OS=Rattus norvegicus GN=Tmprss11g PE=2 SV=1

 Score =  135 bits (341), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 127/236 (53%), Gaps = 23/236 (9%)

Query: 13  DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
           +CG+G+ Y  R  R+ +GK +   +WPWQ SLQV     G+  H CGA LI   W+VT+A
Sbjct: 173 NCGLGMEYP-RIARIADGKPAGSNSWPWQSSLQVE----GI--HLCGASLIGSQWLVTSA 225

Query: 73  HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKL 130
           HC  N       P+LWT   G   RT       R  VE I +HE +  H +  DIA++KL
Sbjct: 226 HCFDN----YKNPKLWTVSFG---RTLGNPLTTR-KVESIIIHENYAAHKHDDDIAVVKL 277

Query: 131 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV 190
           S P     + +R VCL +A  + V PK +   TGWG +K  G   + L+++ + + +  V
Sbjct: 278 SSPV-LFSENLRTVCLPEATFQ-VLPKSKVFVTGWGALKANGPFPNSLQEVEIEIISNDV 335

Query: 191 CR--DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
           C   + YG ++    G +C G L G   AC GDSGGPL  S    +WYL GI S+G
Sbjct: 336 CNQVNVYGGAIS--SGMICAGFLTGKLDACEGDSGGPLVISDNRNKWYLLGIVSWG 389

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8BZ10|TM11G_MOUSE Transmembrane protease serine 11G OS=Mus musculus GN=Tmprss11g PE=2 SV=2

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 126/236 (53%), Gaps = 23/236 (9%)

Query: 13  DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
           DCG G+ Y     R+ +GK + + +WPWQ SLQV     G+  H CGA LI   W+VT+A
Sbjct: 173 DCGSGMEYP-PIARIADGKPADKASWPWQSSLQVE----GI--HLCGASLIGSQWLVTSA 225

Query: 73  HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHD--IALLKL 130
           HC  N       P+LWT   G   RT       R  VE I VHE + ++ HD  IA++KL
Sbjct: 226 HCFDN----YKNPKLWTVSFG---RTLSSPLTTR-KVESIIVHENYASHKHDDDIAVVKL 277

Query: 131 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV 190
           S P     + +  VCL DA  + V PK +   TGWG +K  G   + L+++ + + +  V
Sbjct: 278 SSPV-LFSENLHRVCLPDATFQ-VLPKSKVFVTGWGALKANGPFPNSLQEVEIEIISNDV 335

Query: 191 CR--DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
           C   + YG ++    G +C G L G   AC GDSGGPL  S    +WYL GI S+G
Sbjct: 336 CNQVNVYGGAIS--SGMICAGFLTGKLDACEGDSGGPLVISDNRNKWYLLGIVSWG 389

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P56677|ST14_MOUSE Suppressor of tumorigenicity 14 protein homolog OS=Mus musculus GN=St14 PE=1 SV=2

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/247 (35%), Positives = 129/247 (52%), Gaps = 15/247 (6%)

Query: 5   CDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIH 64
           C   +  ++C  G+R   +Q R++ G  +  G WPWQVSL  L        H CGA LI 
Sbjct: 593 CSDGSDEKNCDCGLRSFTKQARVVGGTNADEGEWPWQVSLHALG-----QGHLCGASLIS 647

Query: 65  PSWVVTAAHCIHNDI-FSLPIPELWTAVLGDWDRTEEEKSEVR-IPVERIRVHEEFHNY- 121
           P W+V+AAHC  +D  F      +WTA LG  D+++   S V+ + ++RI  H  F+++ 
Sbjct: 648 PDWLVSAAHCFQDDKNFKYSDYTMWTAFLGLLDQSKRSASGVQELKLKRIITHPSFNDFT 707

Query: 122 -HHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCV-ATGWGRVKPKGDLVSKLR 179
             +DIALL+L + +      VR +CL DA    V P  + +  TGWG  K  G     L+
Sbjct: 708 FDYDIALLELEK-SVEYSTVVRPICLPDATH--VFPAGKAIWVTGWGHTKEGGTGALILQ 764

Query: 180 QIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAG 239
           +  + + N + C D     +      +C G L G   +C GDSGGPL  + KDGR + AG
Sbjct: 765 KGEIRVINQTTCEDLMPQQITPR--MMCVGFLSGGVDSCQGDSGGPLSSAEKDGRMFQAG 822

Query: 240 ITSFGSG 246
           + S+G G
Sbjct: 823 VVSWGEG 829

Degrades extracellular matrix. Exhibits trypsin-like activity as defined by cleavage of synthetic substrates with Arg or Lys as the P1 site.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 9

>sp|Q7M3E1|CTRC_BOVIN Chymotrypsin-C OS=Bos taurus GN=CTRC PE=1 SV=2

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 133/244 (54%), Gaps = 19/244 (7%)

Query: 8   VTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSW 67
           + +A  CG  I   +   R++ G+++I  +WPWQ+SLQ L  R     H CG  LI P+ 
Sbjct: 11  LAYASSCGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYL--RDNTWRHTCGGTLITPNH 68

Query: 68  VVTAAHCIHNDIFSLPIPELWTAVLGDWD-RTEEEKSEVRIPVERIRVHEEFHNY--HHD 124
           V+TAAHCI N +        +   LG  +   E+E   + + V+ I VHE+++++   +D
Sbjct: 69  VLTAAHCISNTL-------TYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRND 121

Query: 125 IALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 184
           IAL+KL+      D  ++  CL + +   +     C  TGWGR+   G + ++L+Q   P
Sbjct: 122 IALIKLAETVELSDT-IQVACLPE-EGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQP 179

Query: 185 LHNISVC--RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 242
           + + + C  RD +G +V+     +C G  DG   AC GDSGGPL C  ++G W + GI S
Sbjct: 180 VVDYATCSQRDWWGTTVK--ETMVCAGG-DGVISACNGDSGGPLNCQAENGNWDVRGIVS 236

Query: 243 FGSG 246
           FGSG
Sbjct: 237 FGSG 240

Has chymotrypsin-type protease activity and hypocalcemic activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 2

>sp|Q8IU80|TMPS6_HUMAN Transmembrane protease serine 6 OS=Homo sapiens GN=TMPRSS6 PE=1 SV=3

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 114/228 (50%), Gaps = 19/228 (8%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R++ G  S  G WPWQ SLQV         H CG  LI   WV+TAAHC   D  S+   
Sbjct: 576 RIVGGAVSSEGEWPWQASLQVRGR------HICGGALIADRWVITAAHCFQED--SMAST 627

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVH----EEFHNYHHDIALLKLSRPTSARDKGV 141
            LWT  LG   +      EV   V R+ +H    E+ H+Y  D+ALL+L  P   R   V
Sbjct: 628 VLWTVFLGKVWQNSRWPGEVSFKVSRLLLHPYHEEDSHDY--DVALLQLDHPV-VRSAAV 684

Query: 142 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
           R VCL  A      P   C  TGWG ++  G + + L+++ V L    +C + Y    ++
Sbjct: 685 RPVCLP-ARSHFFEPGLHCWITGWGALREGGPISNALQKVDVQLIPQDLCSEVY--RYQV 741

Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
               LC G   G   AC GDSGGPL C    GRW+LAG+ S+G G CG
Sbjct: 742 TPRMLCAGYRKGKKDACQGDSGGPLVCKALSGRWFLAGLVSWGLG-CG 788

Serine protease which hydrolyzes a range of proteins including type I collagen, fibronectin and fibrinogen. Can also activate urokinase-type plasminogen activator with low efficiency. May play a specialized role in matrix remodeling processes in liver. Required to sense iron deficiency. Overexpression suppresses activation of the HAMP promoter.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9JIQ8|TMPS2_MOUSE Transmembrane protease serine 2 OS=Mus musculus GN=Tmprss2 PE=2 SV=3

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 123/239 (51%), Gaps = 16/239 (6%)

Query: 17  GIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIH 76
           G+R   RQ R++ G  +  G WPWQVSL V     G+  H CG  +I P W+VTAAHC+ 
Sbjct: 244 GVRSVKRQSRIVGGLNASPGDWPWQVSLHV----QGV--HVCGGSIITPEWIVTAAHCVE 297

Query: 77  NDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPT 134
             + S   P  WTA  G   R        R  VE++  H  + +   ++DIAL+KL  P 
Sbjct: 298 EPLSS---PRYWTAFAGIL-RQSLMFYGSRHQVEKVISHPNYDSKTKNNDIALMKLQTPL 353

Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK 194
           +  D  V+ VCL +     ++  Q+C  +GWG    KG     L    VPL   S C  K
Sbjct: 354 AFNDL-VKPVCLPNPGMM-LDLDQECWISGWGATYEKGKTSDVLNAAMVPLIEPSKCNSK 411

Query: 195 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR 253
           Y  +  +    +C G L G   +C GDSGGPL  +LK+G W+L G TS+GSG C   +R
Sbjct: 412 YIYNNLITPAMICAGFLQGSVDSCQGDSGGPL-VTLKNGIWWLIGDTSWGSG-CAKALR 468

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9CR35|CTRB1_MOUSE Chymotrypsinogen B OS=Mus musculus GN=Ctrb1 PE=2 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 129/227 (56%), Gaps = 25/227 (11%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R++NG+++I G+WPWQVSLQ    R G   H+CG  LI  +WVVTAAHC         + 
Sbjct: 33  RIVNGEDAIPGSWPWQVSLQ---DRTGF--HFCGGSLISENWVVTAAHC--------GVK 79

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVRA 143
                V G++D+  +E++   + + ++  + +F+++   +DI LLKL+ P    +  V A
Sbjct: 80  TTDVVVAGEFDQGSDEENVQVLKIAQVFKNPKFNSFTVRNDITLLKLATPAQFSET-VSA 138

Query: 144 VCL-TDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
           VCL T  D  P      C  TGWG+ K        KL+Q  +P+ + + C++ +G   ++
Sbjct: 139 VCLPTVDDDFPAG--TLCATTGWGKTKYNALKTPDKLQQAALPIVSEAKCKESWGS--KI 194

Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
               +C G   G S +C+GDSGGPL C  KDG W LAGI S+GSG+C
Sbjct: 195 TDVMICAGA-SGVS-SCMGDSGGPLVCQ-KDGVWTLAGIVSWGSGFC 238

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

>sp|Q3V0Q7|TMPSC_MOUSE Transmembrane protease serine 12 OS=Mus musculus GN=Tmprss12 PE=2 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 11  ARDCGVG-IRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVV 69
            +DCG+  +R +    R+I G ++  GAWPWQVSLQV    +  + H CG  L+   WV+
Sbjct: 49  TKDCGIAPLRGAVEGSRIIGGSQADTGAWPWQVSLQVQDGDI--LMHVCGGALVRDRWVL 106

Query: 70  TAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIAL 127
           TAAHC          P  W AV+G  D T        I +  I +  +F    + +DIAL
Sbjct: 107 TAAHCTKE----ARDPLKWRAVMGTNDLTRSPYHSRNIRITDIIIPPDFIMETFVNDIAL 162

Query: 128 LKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN 187
            +L R     D  ++ +CL     + ++    C  +GWGR + +G+  + L++ +V   +
Sbjct: 163 FRLKRAVRYNDY-IQPICLPFGVFQKLDQNTACFISGWGRTREEGNGTTILQEAKVHFIS 221

Query: 188 ISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSFGSG 246
             VC    G S  +     C G  +G   +C GDSGGPL C L +  R+++ GITS+G G
Sbjct: 222 REVCSSDQGYSGMIPNTSFCAGHENGTFDSCRGDSGGPLMCYLPEHSRYFVMGITSYGHG 281

Query: 247 YCG 249
            CG
Sbjct: 282 -CG 283

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q7RTY8|TMPS7_HUMAN Transmembrane protease serine 7 OS=Homo sapiens GN=TMPRSS7 PE=2 SV=3

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/254 (37%), Positives = 136/254 (53%), Gaps = 31/254 (12%)

Query: 19  RYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHND 78
           R S    R+I G +++ G WPWQVSL  +         +CGA +I   W+++AAHC H +
Sbjct: 598 RSSSALHRIIGGTDTLEGGWPWQVSLHFVGSA------YCGASVISREWLLSAAHCFHGN 651

Query: 79  IFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSR--PT 134
             S P P  WTA LG +    +  ++   PV RI VHE +++  + +DIALL+LS   P 
Sbjct: 652 RLSDPTP--WTAHLGMY---VQGNAKFVSPVRRIVVHEYYNSQTFDYDIALLQLSIAWPE 706

Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVC 191
           + + + ++ +C+    +R V   ++C  TGWGR      KG LV  L+Q  V L + ++C
Sbjct: 707 TLK-QLIQPICIPPTGQR-VRSGEKCWVTGWGRRHEADNKGSLV--LQQAEVELIDQTLC 762

Query: 192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSG---- 246
              YG    +    LC G + G   AC GDSGGPL C  K DG+W L GI S+G G    
Sbjct: 763 VSTYGI---ITSRMLCAGIMSGKRDACKGDSGGPLSCRRKSDGKWILTGIVSWGHGSGRP 819

Query: 247 -YCGVGIRYSHRQP 259
            + GV  R S+  P
Sbjct: 820 NFPGVYTRVSNFVP 833

Serine protease which preferentially hydrolyzes peptides with Arg at the P1 position.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
270002775	287	serine protease P16 [Tribolium castaneum	0.552	0.839	0.604	3e-82
328712500	308	PREDICTED: ovochymase-1-like [Acyrthosip	0.538	0.762	0.582	1e-77
195112336	417	GI22360 [Drosophila mojavensis] gi|19391	0.857	0.896	0.379	1e-71
383856150	314	PREDICTED: transmembrane protease serine	0.5	0.694	0.570	4e-69
328777878	309	PREDICTED: serine protease 15 [Apis mell	0.5	0.705	0.561	5e-69
380023164	293	PREDICTED: chymotrypsin-like elastase fa	0.5	0.744	0.561	1e-68
340717332	318	PREDICTED: chymotrypsin-like elastase fa	0.5	0.685	0.565	2e-68
350407648	318	PREDICTED: chymotrypsin-like elastase fa	0.5	0.685	0.565	2e-68
307183199	328	Acrosin [Camponotus floridanus]	0.5	0.664	0.547	3e-65
307212507	320	Ovochymase-2 [Harpegnathos saltator]	0.541	0.737	0.514	2e-64

>gi|270002775|gb|EEZ99222.1| serine protease P16 [Tribolium castaneum]

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 151/250 (60%), Positives = 187/250 (74%), Gaps = 9/250 (3%)

Query: 4   LCDTVTFARDCGVGIRYSHRQPR------LINGKESIRGAWPWQVSLQVLHPRLGLMPHW 57
           +C +++  +DCG  +R S RQPR      +I+GK+S+RGAWPWQVSLQ+LHP+ G + HW
Sbjct: 11  MCGSMSAFQDCGRSVRRS-RQPRVGALGRIIHGKQSVRGAWPWQVSLQLLHPQFGFLGHW 69

Query: 58  CGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEE 117
           CG VLI P W++TAAHC++ND+F+LP+  LWTAVLGDWDR  EEKSE RIPVE I +HE 
Sbjct: 70  CGGVLISPEWLLTAAHCVNNDLFNLPLAALWTAVLGDWDRDVEEKSEQRIPVEEIILHER 129

Query: 118 FHNYHHDIALLKLSRPTS-ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS 176
           FHN+ HDIAL+KLSRP   ARD  VRAVCL  + +   N    C+ATGWGR    G L  
Sbjct: 130 FHNFQHDIALMKLSRPVKLARDSRVRAVCLPPS-RLAYNQTDLCIATGWGRDAEDGMLAG 188

Query: 177 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 236
           KL + RVPLH+ +VCR KYG +V +  GH+C G LDG SG C+GDSGGPLQC+++DGRW 
Sbjct: 189 KLLEARVPLHDNAVCRKKYGHAVSIRSGHMCAGHLDGSSGTCVGDSGGPLQCAMRDGRWM 248

Query: 237 LAGITSFGSG 246
           LAGITSFGSG
Sbjct: 249 LAGITSFGSG 258

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712500|ref|XP_003244825.1| PREDICTED: ovochymase-1-like [Acyrthosiphon pisum]

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 144/247 (58%), Positives = 181/247 (73%), Gaps = 12/247 (4%)

Query: 11  ARDCGVGI-RYSHRQPR---------LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGA 60
           A +CG+     S+RQPR         L+NGKE+ +GAWPWQVSLQ+LHP  G + HWC  
Sbjct: 22  ADECGLNNGAISYRQPRSGGGGSKSRLVNGKETQKGAWPWQVSLQLLHPAFGFVGHWCAG 81

Query: 61  VLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN 120
           VLI P+WV+TAAHCI N+ FSLP+  LWTAVLGDW+R  EE +E RIP++ + +HE+F+N
Sbjct: 82  VLIRPTWVLTAAHCIRNEKFSLPLAALWTAVLGDWNRDVEEHTEERIPIDEVVIHEKFNN 141

Query: 121 YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 180
           Y +DIAL+KLSRPT+  +  VR +CL  +      PK  CV TGWG+VKP G L  KLRQ
Sbjct: 142 YQNDIALMKLSRPTNITNTNVRCLCLPPSTNNTPIPK-VCVTTGWGKVKPNGPLSGKLRQ 200

Query: 181 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGA-CIGDSGGPLQCSLKDGRWYLAG 239
           I+VP+HN SVCRDKYG +V +  GHLC G++DG  G  C+GDSGGPLQCS  +GRW+LAG
Sbjct: 201 IKVPVHNTSVCRDKYGPAVPITDGHLCAGRMDGKGGGPCVGDSGGPLQCSGPNGRWFLAG 260

Query: 240 ITSFGSG 246
           +TSFGSG
Sbjct: 261 LTSFGSG 267

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112336|ref|XP_002000730.1| GI22360 [Drosophila mojavensis] gi|193917324|gb|EDW16191.1| GI22360 [Drosophila mojavensis]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 162/427 (37%), Positives = 225/427 (52%), Gaps = 53/427 (12%)

Query: 6   DTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHP 65
           +   F  DCG   R   R+ R+I G  +  G +PWQ SL++LHP LG + HWCGAVLIH 
Sbjct: 38  NAAQFETDCGCQPRG--REARIIAGASTQEGQFPWQASLELLHPSLGFLGHWCGAVLIHQ 95

Query: 66  SWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDI 125
            W+++AAHC+HND+F+LPIP LWT VLG+ DR  E  +E RIPVE+I +H  +HN+ HD+
Sbjct: 96  YWILSAAHCVHNDLFNLPIPPLWTVVLGEHDRNVESGNEQRIPVEKIVLHHHYHNFRHDV 155

Query: 126 ALLKLSRPTS-ARDKGVRAVCLTDA-DKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 183
            L+KLS+P   +R   +R +CL     +RPV    +  +      +   D++S+    ++
Sbjct: 156 VLMKLSKPADLSRSSYIRRICLPFMLRERPVQEATESES------ESDDDMLSQ----QL 205

Query: 184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 243
            L ++    D +  S +              S     +   P   ++         I + 
Sbjct: 206 ELDDVPEKIDNFLRSAQ--------------SRRRYRNVTAPSSINMSMRELMNMKILN- 250

Query: 244 GSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAV 303
                   +R S R PR +                T   +  L+KL   +    +  R  
Sbjct: 251 ---RLRQSLRQSQRSPRSLKR--------------TRRRNDKLMKLQLESEQETQFARG- 292

Query: 304 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 363
              D+ + P      CVATGWG+    GDL S+L + +VPLH    C D YG  V +HGG
Sbjct: 293 --QDSHELPF---MDCVATGWGKANISGDLSSQLLKTQVPLHQNRRCIDAYGSFVNIHGG 347

Query: 364 HLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYL 422
           HLC GQL+G  G C+GDSGGPLQC L  DG W LAG+TSFGSGCA   +PDVY ++S+YL
Sbjct: 348 HLCAGQLNGEGGTCVGDSGGPLQCRLSHDGPWILAGVTSFGSGCALENFPDVYLRISYYL 407

Query: 423 PWIRKQI 429
            WI   I
Sbjct: 408 NWIEDTI 414

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856150|ref|XP_003703573.1| PREDICTED: transmembrane protease serine 7-like [Megachile rotundata]

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 158/221 (71%), Gaps = 3/221 (1%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R+ NGK S RG+WPWQVSLQ+LHP+LG + HWCG VLI P+WVVTAAHC+HN++F+LPI 
Sbjct: 63  RIFNGKPSKRGSWPWQVSLQLLHPKLGFIGHWCGGVLIEPNWVVTAAHCVHNELFNLPIG 122

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
            LWTAV+G+W+     +   R+PVER+ +HE F+NY HDIAL+KL+RP +   K VR +C
Sbjct: 123 ALWTAVVGEWELDSGGRGSARLPVERVILHERFNNYMHDIALMKLARP-APLSKAVRTIC 181

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L D ++     K QCVA+GWGR  P   L + L +  VPL ++  C   YG SV L  GH
Sbjct: 182 LPDPEEELA--KSQCVASGWGRYGPSQSLSTALLEASVPLLDLEKCTQAYGKSVPLRSGH 239

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           LC G  DG SG+C+GDSGGPLQC   DG W LAG+TSFGSG
Sbjct: 240 LCAGHTDGSSGSCVGDSGGPLQCRRADGVWQLAGVTSFGSG 280

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777878|ref|XP_395901.2| PREDICTED: serine protease 15 [Apis mellifera]

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 124/221 (56%), Positives = 160/221 (72%), Gaps = 3/221 (1%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R+ NGK S RG+WPWQVSLQ+LHP+LG + HWCG VLI P+WVVTAAHCIHN++F+LPI 
Sbjct: 59  RIFNGKPSKRGSWPWQVSLQLLHPKLGFIGHWCGGVLIEPTWVVTAAHCIHNELFNLPIG 118

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
            LWTAV+G+W+     +   R+PVER+ +HE F+NY HDIAL+KL+RP +   K VR +C
Sbjct: 119 ALWTAVVGEWELNSGGRGSARLPVERVILHERFNNYLHDIALMKLARP-APLSKVVRTIC 177

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L + +++  N  + CVA+GWGR  P   L + L +  VPL ++  C   YG SV L  GH
Sbjct: 178 LPEPEEKLAN--RYCVASGWGRYGPSQSLSTALLEASVPLLDLEKCTKAYGKSVSLRNGH 235

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           LC G +DG +G+C+GDSGGPLQC   DG W LAG+TSFGSG
Sbjct: 236 LCAGHIDGSTGSCVGDSGGPLQCRRADGVWQLAGVTSFGSG 276

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023164|ref|XP_003695397.1| PREDICTED: chymotrypsin-like elastase family member 2A-like [Apis florea]

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/221 (56%), Positives = 159/221 (71%), Gaps = 3/221 (1%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R+ NGK S RG+WPWQVSLQ+LHP+LG + HWCG VLI P+WVVTAAHCIHN++F+LPI 
Sbjct: 43  RIFNGKPSKRGSWPWQVSLQLLHPKLGFIGHWCGGVLIEPTWVVTAAHCIHNELFNLPIG 102

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
            LWTAV+G+W+     +   R+PVER+ +HE F+NY HDIAL+KL+RP +   K VR +C
Sbjct: 103 ALWTAVVGEWELNSGGRGSARLPVERVILHERFNNYLHDIALMKLARP-APLSKVVRTIC 161

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L + +++  N  + CVA+GWGR  P   L + L +  VPL ++  C   YG SV L  GH
Sbjct: 162 LPEPEEKLAN--RYCVASGWGRYGPSQSLSTALLEASVPLLDLEKCTKAYGKSVSLRNGH 219

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           LC G  DG +G+C+GDSGGPLQC   DG W LAG+TSFGSG
Sbjct: 220 LCAGHTDGSTGSCVGDSGGPLQCRRADGVWQLAGVTSFGSG 260

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717332|ref|XP_003397138.1| PREDICTED: chymotrypsin-like elastase family member 2A-like [Bombus terrestris]

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 159/221 (71%), Gaps = 3/221 (1%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R+ NGK S RG+WPWQVSLQ+LHP+LG + HWCG VLI P+WVVTAAHCIHN++F+LPI 
Sbjct: 68  RIFNGKPSKRGSWPWQVSLQLLHPKLGFIGHWCGGVLIEPTWVVTAAHCIHNELFNLPIG 127

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
            LWTAV+G+W+     +   R+PVER+ +HE F+NY HDIAL+KL+RP +   K VR +C
Sbjct: 128 ALWTAVVGEWELDSGGRGSARLPVERVILHERFNNYLHDIALMKLARP-APLSKVVRTIC 186

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L + ++   N  +QCVA+GWGR  P   L + L +  VPL ++  C   YG SV L  GH
Sbjct: 187 LPEPEEELAN--RQCVASGWGRYGPSQSLSTALLEASVPLLDLEKCMKAYGKSVSLRSGH 244

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           LC G  DG +G+C+GDSGGPLQC   DG W LAG+TSFGSG
Sbjct: 245 LCAGHTDGSTGSCVGDSGGPLQCRRADGVWQLAGVTSFGSG 285

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407648|ref|XP_003488148.1| PREDICTED: chymotrypsin-like elastase family member 2A-like [Bombus impatiens]

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 159/221 (71%), Gaps = 3/221 (1%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R+ NGK S RG+WPWQVSLQ+LHP+LG + HWCG VLI P+WVVTAAHCIHN++F+LPI 
Sbjct: 68  RIFNGKPSKRGSWPWQVSLQLLHPKLGFIGHWCGGVLIEPTWVVTAAHCIHNELFNLPIG 127

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
            LWTAV+G+W+     +   R+PVER+ +HE F+NY HDIAL+KL+RP +   K VR +C
Sbjct: 128 ALWTAVVGEWELDSGGRGSARLPVERVILHERFNNYLHDIALMKLARP-APLSKVVRTIC 186

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L + ++   N  +QCVA+GWGR  P   L + L +  VPL ++  C   YG SV L  GH
Sbjct: 187 LPEPEEELAN--RQCVASGWGRYGPSQSLSTALLEASVPLLDLEKCMKAYGKSVSLRSGH 244

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           LC G  DG +G+C+GDSGGPLQC   DG W LAG+TSFGSG
Sbjct: 245 LCAGHTDGSTGSCVGDSGGPLQCRRADGVWQLAGVTSFGSG 285

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183199|gb|EFN70108.1| Acrosin [Camponotus floridanus]

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/221 (54%), Positives = 157/221 (71%), Gaps = 3/221 (1%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R+ NGK S +GAWPWQVSLQ+LHP+LG + HWCG VLI P WV+T AHCIHN++F+LPI 
Sbjct: 78  RIFNGKPSRKGAWPWQVSLQLLHPKLGFIGHWCGGVLIDPRWVITVAHCIHNELFNLPIG 137

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
            LWTAV+G+W+     +   R+PVE++ +HE F+NY HDIAL+KL+RP +   K VR +C
Sbjct: 138 ALWTAVVGEWELDAGGRGSARLPVEKVILHERFNNYVHDIALMKLARP-APLSKVVRTIC 196

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L   ++     K+QCVA+GWGR  P   L + L ++ VPL ++  C   YG SV +  GH
Sbjct: 197 LPGPEQ--YIGKRQCVASGWGRYGPSPSLSTALLEVSVPLLDLEECLQAYGTSVPIRKGH 254

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           LC G +DG SG+C+GDSGGPLQC   DG W L G+TSFGSG
Sbjct: 255 LCAGHIDGSSGSCVGDSGGPLQCRRSDGAWQLVGVTSFGSG 295

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212507|gb|EFN88238.1| Ovochymase-2 [Harpegnathos saltator]

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 158/239 (66%), Gaps = 3/239 (1%)

Query: 8   VTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSW 67
           V   +D G     +    R+ NGK S RG+WPWQVSLQ+LHP  G + HWCG VLI P W
Sbjct: 53  VQVLKDTGASSTTTTTTGRIFNGKPSKRGSWPWQVSLQLLHPTHGFIGHWCGGVLIDPKW 112

Query: 68  VVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIAL 127
           V+TAAHCIHN++F+LPI  LWTAV+G+W+         R+PVE++ +HE F+NY HDIAL
Sbjct: 113 VLTAAHCIHNELFNLPIGALWTAVVGEWELDAGGHGSTRLPVEKVILHERFNNYLHDIAL 172

Query: 128 LKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN 187
           +KL+RP +   K VR +CL D ++     ++QCV +GWGR  P   L + L +  VPL N
Sbjct: 173 MKLARP-APLSKVVRTICLPDPEEN--FAERQCVTSGWGRYGPSPSLSTALLEANVPLLN 229

Query: 188 ISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           +  C   YG  V +  GHLC G  DG +G+C+GDSGGPLQC   DG W LAG+TSFGSG
Sbjct: 230 LEECLQVYGTLVPIRKGHLCAGHTDGSTGSCVGDSGGPLQCRRADGVWQLAGVTSFGSG 288

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
FB|FBgn0038447	442	CG14892 [Drosophila melanogast	0.309	0.305	0.528	2.8e-78
UNIPROTKB|E1B9Z9	1095	TMPRSS9 "Uncharacterized prote	0.552	0.220	0.359	3.3e-31
RGD|1309581	1061	Tmprss9 "transmembrane proteas	0.513	0.211	0.356	4.2e-29
UNIPROTKB|F1NP62	983	F1NP62 "Uncharacterized protei	0.516	0.228	0.337	2.9e-54
UNIPROTKB|F1RIS0	855	F1RIS0 "Uncharacterized protei	0.486	0.247	0.378	5.5e-52
UNIPROTKB|Q7Z410	1059	TMPRSS9 "Transmembrane proteas	0.513	0.211	0.379	2.4e-31
UNIPROTKB|I3LDL1	1047	TMPRSS9 "Uncharacterized prote	0.548	0.228	0.356	3.6e-33
UNIPROTKB|F1N633	935	F1N633 "Uncharacterized protei	0.525	0.244	0.352	5.9e-49
UNIPROTKB|F1NZZ9	805	OVCH2 "Uncharacterized protein	0.481	0.260	0.354	8.5e-29
ZFIN|ZDB-GENE-040426-834	556	zgc:55888 "zgc:55888" [Danio r	0.472	0.370	0.367	9.3e-47

FB|FBgn0038447 CG14892 [Drosophila melanogaster (taxid:7227)]

 Score = 421 (153.3 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
 Identities = 73/138 (52%), Positives = 97/138 (70%)

Query:    10 FARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVV 69
             F  DCG   R + R PR+I G  +  G +PWQ SL++LHP LG + HWCGAVLIH  W++
Sbjct:    66 FETDCGC--RPARRGPRIIAGAATNEGQFPWQASLELLHPSLGFLGHWCGAVLIHQYWIL 123

Query:    70 TAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLK 129
             +AAHC+HND+F+LPIP LWT VLG+ DR  E  +E RIPVE+I +H  +HN+ HD+ L+K
Sbjct:   124 SAAHCVHNDLFNLPIPPLWTVVLGEHDRDVESGNEQRIPVEKIVMHHRYHNFKHDVVLMK 183

Query:   130 LSRPTS-ARDKGVRAVCL 146
             LS+P    R   +R +CL
Sbjct:   184 LSKPADLTRASNIRRICL 201

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

UNIPROTKB|E1B9Z9 TMPRSS9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 355 (130.0 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 96/267 (35%), Positives = 137/267 (51%)

Query:    13 DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
             DCG+    +    R++ G  + RG WPWQVSL  L  R     H CGAVL+   W+++AA
Sbjct:   851 DCGLAPAAA--LTRIVGGSAAGRGEWPWQVSLW-LRRR----EHRCGAVLVAERWLLSAA 903

Query:    73 HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKL 130
             HC   D++    P+ W A LG    +  +    R  V RI  H  ++ Y   +D+ALL+L
Sbjct:   904 HCF--DVYG--DPKQWAAFLGTPFLSGADGQLER--VARIHKHPFYNLYTLDYDVALLEL 957

Query:   131 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV 190
               P   R + VR +CL +   RP +  + CV TGWG V+  G +  +L++  V L +   
Sbjct:   958 VGPVR-RSRLVRPICLPEPAPRPPDGAR-CVITGWGSVREGGSMARQLQKAAVRLLSEQT 1015

Query:   191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV 250
             CR  Y   V++    LC G   G   +C GD+GGPL C    GRW L G+TS+G G CG 
Sbjct:  1016 CRRFY--PVQISSRMLCAGFPQGGVDSCSGDAGGPLACREPSGRWVLTGVTSWGYG-CG- 1071

Query:   251 GIRYSHRQPRLINGKESIRGAWPWQNL 277
                   + P +     ++RG W  QN+
Sbjct:  1072 ----RPQFPGVYTRVAAVRG-WIGQNI 1093

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

RGD|1309581 Tmprss9 "transmembrane protease, serine 9" [Rattus norvegicus (taxid:10116)]

 Score = 335 (123.0 bits), Expect = 4.2e-29, P = 4.2e-29
 Identities = 88/247 (35%), Positives = 127/247 (51%)

Query:     7 TVTFAR--DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIH 64
             T  F+   DCG+    +    R++ G  +  G WPWQVSL  L  R     H CGAVL+ 
Sbjct:   810 TTVFSHLPDCGLAPPGA--LTRIVGGSAASLGEWPWQVSLW-LRRR----EHRCGAVLVA 862

Query:    65 PSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--H 122
               W+++AAHC   D++  P+   W A LG    +  E    R  V RI  H  ++ Y   
Sbjct:   863 ERWLLSAAHCF--DVYGDPMQ--WAAFLGTPFLSSTEGQLER--VARIYRHPFYNIYTLD 916

Query:   123 HDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR 182
             +D+ALL+L+ P   R + VR +CL    + P   +  CV TGWG ++  G +  +L++  
Sbjct:   917 YDVALLELAGPVR-RSRLVRPICLPGPTRPPEGAR--CVITGWGSLREGGSMARQLQKAA 973

Query:   183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 242
             V + +   CR  Y   V++    LC G   G   +C GD+GGPL C    G+W L G+TS
Sbjct:   974 VRVLSEQTCRRFY--PVQISSRMLCAGFPQGGVDSCSGDAGGPLACREPSGQWVLTGVTS 1031

Query:   243 FGSGYCG 249
             +G G CG
Sbjct:  1032 WGYG-CG 1037

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1NP62 F1NP62 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 322 (118.4 bits), Expect = 2.9e-54, Sum P(3) = 2.9e-54
 Identities = 84/249 (33%), Positives = 130/249 (52%)

Query:     5 CDTVTFARDCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLI 63
             C   +  + C  G R + +   R++ G E+ RG +PWQVSL+  +       H+CGA ++
Sbjct:   160 CADASDEKGCDCGSRPAMQTASRIVGGTEASRGEFPWQVSLRENNE------HFCGAAIL 213

Query:    64 HPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--Y 121
                W+V+AAHC     F    P +W A  G    +  + S V++ + RI  H  ++    
Sbjct:   214 TEKWLVSAAHCFTE--FQ--DPAMWAAYAGTTSISGADSSAVKMGIARIIPHPSYNTDTA 269

Query:   122 HHDIALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSK--- 177
              +D+A+L+L RP +   K ++ VCL  A    P N K  C+ +GWG +K   D + K   
Sbjct:   270 DYDVAVLELKRPVTFT-KYIQPVCLPHAGHHFPTNKK--CLISGWGYLKE--DFLVKPEF 324

Query:   178 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 237
             L++  V L + ++C   Y  +  L    LC G L+G   +C GDSGGPL C    G+++L
Sbjct:   325 LQKATVKLLDQALCSSLYSHA--LTDRMLCAGYLEGKIDSCQGDSGGPLVCEEPSGKFFL 382

Query:   238 AGITSFGSG 246
             AGI S+G G
Sbjct:   383 AGIVSWGIG 391

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1RIS0 F1RIS0 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 316 (116.3 bits), Expect = 5.5e-52, Sum P(3) = 5.5e-52
 Identities = 89/235 (37%), Positives = 119/235 (50%)

Query:    26 RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
             R++ G ++  G WPWQVSL   H   G   H CG  LI PSWV++AAHC  N+    P  
Sbjct:     1 RIMGGSDARPGTWPWQVSL---HQGGG---HICGGSLIAPSWVLSAAHCFMNNGTLEPAA 54

Query:    86 ELWTAVLGDWDRTEE-EKSEVRIPVERIRVHEEFHNYHH--DIALLKLSRPTSARDKGVR 142
             E W+ VLG   +    + + +R  V  I V + + +     D+ALL+L+ P       VR
Sbjct:    55 E-WSVVLGVHSQDGPLDGAHIRA-VAAILVPDNYSSVEQGADVALLRLASPARL-GPAVR 111

Query:   143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRVPLHNISVCRDKYGD--- 197
              VCL  A  R       C ATGWG V+    L     L+++ + L   + C+  Y     
Sbjct:   112 PVCLPRASHRFARGTA-CWATGWGDVQEADPLPLPWALQEVELRLLGEAACQCLYSRPGP 170

Query:   198 ---SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
                + +L  G LC G  +G    C GDSGGPL C  + GRW+ AGITSFG G CG
Sbjct:   171 FNLTFQLLPGMLCAGYPEGRRDTCQGDSGGPLVCE-EGGRWFQAGITSFGFG-CG 223

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q7Z410 TMPRSS9 "Transmembrane protease serine 9" [Homo sapiens (taxid:9606)]

 Score = 356 (130.4 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 93/245 (37%), Positives = 128/245 (52%)

Query:     7 TVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPS 66
             T T   DCG+         R++ G  + RG WPWQVSL  L  R     H CGAVL+   
Sbjct:   810 THTQLPDCGLA---PAALTRIVGGSAAGRGEWPWQVSLW-LRRR----EHRCGAVLVAER 861

Query:    67 WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHD 124
             W+++AAHC   D++    P+ W A LG    +  E    R  V RI  H  ++ Y   +D
Sbjct:   862 WLLSAAHCF--DVYG--DPKQWAAFLGTPFLSGAEGQLER--VARIYKHPFYNLYTLDYD 915

Query:   125 IALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 184
             +ALL+L+ P   R + VR +CL +   RP +  + CV TGWG V+  G +  +L++  V 
Sbjct:   916 VALLELAGPVR-RSRLVRPICLPEPAPRPPDGTR-CVITGWGSVREGGSMARQLQKAAVR 973

Query:   185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
             L +   CR  Y   V++    LC G   G   +C GD+GGPL C    GRW L G+TS+G
Sbjct:   974 LLSEQTCRRFY--PVQISSRMLCAGFPQGGVDSCSGDAGGPLACREPSGRWVLTGVTSWG 1031

Query:   245 SGYCG 249
              G CG
Sbjct:  1032 YG-CG 1035

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|I3LDL1 TMPRSS9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 373 (136.4 bits), Expect = 3.6e-33, P = 3.6e-33
 Identities = 96/269 (35%), Positives = 142/269 (52%)

Query:    13 DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
             DCG+    +    R++ G  + RG WPWQVSL  L  R     H CGAVL+   W+++AA
Sbjct:   803 DCGLAPAAA--LTRIVGGSAAGRGEWPWQVSLW-LRRR----EHRCGAVLVAERWLLSAA 855

Query:    73 HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEE-FHNYH---HDIALL 128
             HC   D++    P+ W A LG    +  +    R+    +R+H+  F+N +   +D+ALL
Sbjct:   856 HCF--DVYG--DPKQWAAFLGTPFLSGADGQLERV----VRIHKHPFYNVYTLDYDVALL 907

Query:   129 KLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI 188
             +L+ P   R + VR +CL +   RP +  + CV TGWG V+  G +  +L++  V L + 
Sbjct:   908 ELAGPVR-RSRLVRPICLPEPGPRPPDGAR-CVITGWGSVREGGSMARQLQKAAVRLLSE 965

Query:   189 SVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
               CR  Y   V++    LC G   G   +C GD+GGPL C    GRW L G+TS+G G C
Sbjct:   966 QTCRRFY--PVQISSRMLCAGFPQGGVDSCSGDAGGPLACRDPSGRWVLTGVTSWGYG-C 1022

Query:   249 GVGIRYSHRQPRLINGKESIRGAWPWQNL 277
             G       + P +     ++RG W WQN+
Sbjct:  1023 G-----RPQFPGVYTRVAAVRG-WIWQNI 1045

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1N633 F1N633 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 322 (118.4 bits), Expect = 5.9e-49, Sum P(3) = 5.9e-49
 Identities = 90/255 (35%), Positives = 128/255 (50%)

Query:     2 INLCDTVTFARDCGVGIRYSHRQP----RLINGKESIRGAWPWQVSLQVLHPRLGLMPHW 57
             IN  +T  F  +C  G R  ++ P    R++ G E   G WPWQ SLQ      G+  H 
Sbjct:    47 INKTETDNFLNNC-CGTR-RNKTPGQSLRIVGGTEVQEGEWPWQTSLQWD----GI--HR 98

Query:    58 CGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEE 117
             CGA LI+ +W+V+AAHC      +   P  WTA  G          ++R  + RI VHE+
Sbjct:    99 CGATLINDTWLVSAAHCFR----TYKDPARWTASFG----VTIYPPKMRRALRRIIVHEK 150

Query:   118 FH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK-PKGDL 174
             +   ++ +DI++L+LSRP    +  V  +CL DA      P  +   TG+G ++  +G  
Sbjct:   151 YKYPSHDYDISVLELSRPVPYTN-AVHKICLPDASHE-FRPGDEMFVTGFGALQNDEGSS 208

Query:   175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGR 234
              + LRQ++V L +  +C      +  +    LC G L G   AC GDSGGPL        
Sbjct:   209 QNHLRQVQVDLIDAKICNAPQAYNNAITPTMLCAGSLKGNKDACQGDSGGPLVSPDARDI 268

Query:   235 WYLAGITSFGSGYCG 249
             WYLAGI S+G   CG
Sbjct:   269 WYLAGIVSWGDE-CG 282

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1NZZ9 OVCH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 330 (121.2 bits), Expect = 8.5e-29, P = 8.5e-29
 Identities = 82/231 (35%), Positives = 122/231 (52%)

Query:    26 RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHN-DIFSLPI 84
             R+I G+E++  +WPWQVS+Q+         H CG  ++   WV+TAAHC ++ +++    
Sbjct:   565 RIIGGEEAVPHSWPWQVSIQISDQ------HICGGAVLAKEWVITAAHCFNSKELYR--- 615

Query:    85 PELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVR 142
              +LW  V G  D TE+E  + R  V++  +H  F+      DIALL+L+ P       V 
Sbjct:   616 -DLWMVVTGIHDLTEQEYRQKR-SVKQYIIHPSFNKTTMDSDIALLQLAEPLEFNHY-VH 672

Query:   143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD-SVEL 201
              VCL  A +  V P   C+ TGWG  +   +   KL Q+ VP+  +  C+  Y +    +
Sbjct:   673 PVCLP-AKEEVVQPSSVCIITGWGAQEEDREKSKKLYQLEVPILMLEACQTYYINLPSRV 731

Query:   202 HGGHLCGG-QLDGFSGACIGDSGGPLQCSLKDGRWY--LAGITSFGSGYCG 249
                 +C G  L+    +C GDSGGPL C  +DG  +  L GITS+G G CG
Sbjct:   732 TQRMICAGFPLEEGKDSCTGDSGGPLVCPSEDGSGFYTLHGITSWGLG-CG 781

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-040426-834 zgc:55888 "zgc:55888" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 9.3e-47, Sum P(3) = 9.3e-47
 Identities = 85/231 (36%), Positives = 117/231 (50%)

Query:    24 QPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLP 83
             + R+I GKE+   +WPWQVSLQ        +P  CG  ++   WV+TA HC         
Sbjct:    54 ESRIIGGKEAWAHSWPWQVSLQYND-----VPT-CGGAILDQLWVITAGHCFKR----YK 103

Query:    84 IPELWTAVLG--DWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDK 139
              P +W AV+G  + D   E   E  I V++I  H+ ++     +DIALLKL  P     K
Sbjct:   104 KPSMWNAVVGLHNLDNANESSRE-SIQVQKIFSHKNYNQKTNENDIALLKLQSPL-VFSK 161

Query:   140 GVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV 199
              VR + + + D  P+     C  TGWG V   G   S+L+++ V ++    C   Y   V
Sbjct:   162 FVRPIGVFNNDLPPL---VTCTVTGWGSVTENGPQASRLQEVNVTVYEPQKCNRFYRGKV 218

Query:   200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDG-RWYLAGITSFGSGYCG 249
              L    +C G  +G   AC GDSGGPL C   DG R+ LAG+ S+G G CG
Sbjct:   219 -LKS-MICAGANEGGMDACQGDSGGPLSCF--DGERYKLAGVVSWGVG-CG 264

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	436
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	9e-66
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	2e-62
pfam00089	218	pfam00089, Trypsin, Trypsin	6e-45
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	8e-42
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	3e-39
pfam00089	218	pfam00089, Trypsin, Trypsin	3e-26
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	3e-17
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	5e-09

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  209 bits (535), Expect = 9e-66
 Identities = 86/225 (38%), Positives = 120/225 (53%), Gaps = 16/225 (7%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E+  G++PWQVSLQ    R     H+CG  LI P WV+TAAHC+++       P  
Sbjct: 2   VGGSEAKIGSFPWQVSLQYTGGR-----HFCGGSLISPRWVLTAAHCVYS-----SAPSN 51

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
           +T  LG  D +  E     I V+++ VH  ++   Y +DIALLKL RP +  D  VR +C
Sbjct: 52  YTVRLGSHDLSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDN-VRPIC 110

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L  +    +     C  +GWGR    G L   L+++ VP+ + + C+  Y     +    
Sbjct: 111 LPSSG-YNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNM 169

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV 250
           LC G L+G   AC GDSGGPL C+  +GR  L GI S+GSG C  
Sbjct: 170 LCAGGLEGGKDACQGDSGGPLVCN-DNGRGVLVGIVSWGSG-CAR 212

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  201 bits (513), Expect = 2e-62
 Identities = 89/227 (39%), Positives = 120/227 (52%), Gaps = 19/227 (8%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R++ G E+  G++PWQVSLQ    R     H+CG  LI P WV+TAAHC+         P
Sbjct: 1   RIVGGSEANIGSFPWQVSLQYGGGR-----HFCGGSLISPRWVLTAAHCVRG-----SDP 50

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRA 143
                 LG  D +  E+ +V I V ++ +H  ++   Y +DIALLKL  P +  D  VR 
Sbjct: 51  SNIRVRLGSHDLSSGEEGQV-IKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDN-VRP 108

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           +CL  ++   V     C  +GWGR     G L   L+++ VP+ + + CR  Y     + 
Sbjct: 109 ICLPSSN-YNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAIT 167

Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              LC G L+G   AC GDSGGPL C   DGRW L GI S+GSG C 
Sbjct: 168 DNMLCAGGLEGGKDACQGDSGGPLVC--NDGRWVLVGIVSWGSG-CA 211

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score =  155 bits (393), Expect = 6e-45
 Identities = 84/233 (36%), Positives = 114/233 (48%), Gaps = 25/233 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E+  G++PWQVSLQV   +     H+CG  LI  +WV+TAAHC+ N        + 
Sbjct: 2   VGGDEAQPGSFPWQVSLQVSSGK-----HFCGGSLISENWVLTAAHCVSN-------AKS 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-HNYHHDIALLKLSRPTSARDKGVRAVCL 146
              VLG  +    E  E +  V+++ VH  +  +  +DIALLKL  P +  D  VR +CL
Sbjct: 50  VRVVLGAHNIVLREGGEQKFDVKKVIVHPNYNPDTDNDIALLKLKSPVTLGD-TVRPICL 108

Query: 147 TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHL 206
             A    +     C  +GWG  K  G L   L+++ VP+ +   CR  YG +V      +
Sbjct: 109 PTAS-SDLPVGTTCTVSGWGNTKTLG-LPDTLQEVTVPVVSRETCRSAYGGTVT--DNMI 164

Query: 207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQP 259
           C G   G   AC GDSGGPL CS       L GI S+G G C  G       P
Sbjct: 165 CAG--AGGKDACQGDSGGPLVCSDG----ELIGIVSWGYG-CASGNYPGVYTP 210

Length = 218

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  147 bits (373), Expect = 8e-42
 Identities = 61/144 (42%), Positives = 82/144 (56%), Gaps = 3/144 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALLKL RP +  D  VR +CL  +    +     C  +GWGR    G L   L+++ VP+
Sbjct: 92  ALLKLKRPVTLSDN-VRPICLPSSG-YNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPI 149

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + C+  Y     +    LC G L+G   AC GDSGGPL C+  +GR  L GI S+GS
Sbjct: 150 VSNAECKRAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPLVCN-DNGRGVLVGIVSWGS 208

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQ 428
           GCA+  YP VYT++S YL WI+K 
Sbjct: 209 GCARPNYPGVYTRVSSYLDWIQKT 232

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  140 bits (356), Expect = 3e-39
 Identities = 63/142 (44%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVP 343
           ALLKL  P +  D  VR +CL  ++   V     C  +GWGR     G L   L+++ VP
Sbjct: 92  ALLKLKEPVTLSDN-VRPICLPSSN-YNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVP 149

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           + + + CR  Y     +    LC G L+G   AC GDSGGPL C   DGRW L GI S+G
Sbjct: 150 IVSNATCRRAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVC--NDGRWVLVGIVSWG 207

Query: 404 SGCAKSGYPDVYTKLSFYLPWI 425
           SGCA+ G P VYT++S YL WI
Sbjct: 208 SGCARPGKPGVYTRVSSYLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score =  105 bits (263), Expect = 3e-26
 Identities = 59/141 (41%), Positives = 72/141 (51%), Gaps = 11/141 (7%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALLKL  P +  D  VR +CL  A    +     C  +GWG  K  G L   L+++ VP+
Sbjct: 89  ALLKLKSPVTLGD-TVRPICLPTAS-SDLPVGTTCTVSGWGNTKTLG-LPDTLQEVTVPV 145

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   CR  YG +V      +C G   G   AC GDSGGPL CS       L GI S+G 
Sbjct: 146 VSRETCRSAYGGTVT--DNMICAG--AGGKDACQGDSGGPLVCSDG----ELIGIVSWGY 197

Query: 405 GCAKSGYPDVYTKLSFYLPWI 425
           GCA   YP VYT +S YL WI
Sbjct: 198 GCASGNYPGVYTPVSSYLDWI 218

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 83.0 bits (205), Expect = 3e-17
 Identities = 63/235 (26%), Positives = 95/235 (40%), Gaps = 19/235 (8%)

Query: 25  PRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPI 84
            R+I G  +  G +P  V+L V      +   +CG   +   +V+TAAHC      S PI
Sbjct: 31  SRIIGGSNANAGEYPSLVAL-VDRISDYVSGTFCGGSKLGGRYVLTAAHCADA---SSPI 86

Query: 85  PELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVR 142
                 V+   D  +  ++E R  V  I VHE +   N  +DIA+L+L+R  S     + 
Sbjct: 87  SSDVNRVV--VDLNDSSQAE-RGHVRTIYVHEFYSPGNLGNDIAVLELARAASLPRVKIT 143

Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-----VSKLRQIRVPLHNISVCRDKYGD 197
           +   +D     V          +G   P          + L ++ V    +S C    G 
Sbjct: 144 SFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGC 203

Query: 198 SVELHGGHLC--GGQLDGFS-GACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +     G     G         AC GDSGGP+    ++GR    G+ S+G G CG
Sbjct: 204 A-NASDGATGLTGFCAGRPPKDACQGDSGGPIFHKGEEGRVQR-GVVSWGDGGCG 256

Length = 413

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 283 SAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-----VSKL 337
             A+L+L+R  S     + +   +D     V          +G   P          + L
Sbjct: 125 DIAVLELARAASLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTIL 184

Query: 338 RQIRVPLHNISVCRDKYGDSVELHGGHLC--GGQLDGFS-GACIGDSGGPLQCSLKDGRW 394
            ++ V    +S C    G +     G     G         AC GDSGGP+    ++GR 
Sbjct: 185 HEVAVLFVPLSTCAQYKGCA-NASDGATGLTGFCAGRPPKDACQGDSGGPIFHKGEEGRV 243

Query: 395 YLAGITSFG-SGCAKSGYPDVYTKLSFYLPWIRKQIN 430
              G+ S+G  GC  +  P VYT +S Y  WI    N
Sbjct: 244 QR-GVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMTN 279

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	436
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	100.0
KOG3627|consensus	256		100.0
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	100.0
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	100.0
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.96
KOG3627|consensus	256		99.94
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	99.92
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	99.87
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.83
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	99.74
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.61
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	99.48
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	98.67
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	98.27
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.19
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.06
PRK10898	353	serine endoprotease; Provisional	97.94
PRK10139	455	serine endoprotease; Provisional	97.9
PRK10942	473	serine endoprotease; Provisional	97.81
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	97.29
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	96.15
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	93.68
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	90.18
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	85.09
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	82.07
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	81.2
PRK10898	353	serine endoprotease; Provisional	80.99

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=100.00  E-value=5.6e-40  Score=297.75  Aligned_cols=226  Identities=38%  Similarity=0.723  Sum_probs=192.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||+++..++|||+|+|+...     ..++|+||||+++||||||||+....     ...+.|++|...........+.
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~-----~~~~C~GtlIs~~~VLTaAhC~~~~~-----~~~~~v~~g~~~~~~~~~~~~~   70 (232)
T cd00190           1 IVGGSEAKIGSFPWQVSLQYTG-----GRHFCGGSLISPRWVLTAAHCVYSSA-----PSNYTVRLGSHDLSSNEGGGQV   70 (232)
T ss_pred             CcCCeECCCCCCCCEEEEEccC-----CcEEEEEEEeeCCEEEECHHhcCCCC-----CccEEEEeCcccccCCCCceEE
Confidence            6899999999999999998763     16899999999999999999997631     4678899998776654445677


Q ss_pred             EeeeEEEeCCCCCC--CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~~--~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|.++++||+|+.  ..+|||||||++|+. ++.+++|+|||... .....+..+.++|||...........++...+.
T Consensus        71 ~~v~~~~~hp~y~~~~~~~DiAll~L~~~~~-~~~~v~picl~~~~-~~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~  148 (232)
T cd00190          71 IKVKKVIVHPNYNPSTYDNDIALLKLKRPVT-LSDNVRPICLPSSG-YNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVP  148 (232)
T ss_pred             EEEEEEEECCCCCCCCCcCCEEEEEECCccc-CCCcccceECCCcc-ccCCCCCEEEEEeCCcCCCCCCCCceeeEEEee
Confidence            89999999999984  689999999999999 67789999999863 345577899999999987655566789999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CCccccccccee
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VGIRYSHRQPRL  261 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~~~y~~v~~~~  261 (436)
                      +++...|...+.......+.++|+.......+.|.|||||||++.. +++|+|+||+|+|.. |+   .+.+|+++..+.
T Consensus       149 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~lvGI~s~g~~-c~~~~~~~~~t~v~~~~  226 (232)
T cd00190         149 IVSNAECKRAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPLVCND-NGRGVLVGIVSWGSG-CARPNYPGVYTRVSSYL  226 (232)
T ss_pred             eECHHHhhhhccCcccCCCceEeeCCCCCCCccccCCCCCcEEEEe-CCEEEEEEEEehhhc-cCCCCCCCEEEEcHHhh
Confidence            9999999988865345667999998876568899999999999985 589999999999987 77   457899999999


Q ss_pred             cCCcc
Q psy16044        262 INGKE  266 (436)
Q Consensus       262 ~~~~~  266 (436)
                      .||.+
T Consensus       227 ~WI~~  231 (232)
T cd00190         227 DWIQK  231 (232)
T ss_pred             HHhhc
Confidence            99975

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=100.00  E-value=1.6e-37  Score=286.11  Aligned_cols=235  Identities=38%  Similarity=0.688  Sum_probs=188.5

Q ss_pred             CCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc-C
Q psy16044         23 RQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE-E  101 (436)
Q Consensus        23 ~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~-~  101 (436)
                      ...||+||.++.+++|||+|+|+....    ..++|+|+||+++||||||||+....    .. .+.|++|.+..... .
T Consensus         9 ~~~~i~~g~~~~~~~~Pw~~~l~~~~~----~~~~Cggsli~~~~vltaaHC~~~~~----~~-~~~V~~G~~~~~~~~~   79 (256)
T KOG3627|consen    9 PEGRIVGGTEAEPGSFPWQVSLQYGGN----GRHLCGGSLISPRWVLTAAHCVKGAS----AS-LYTVRLGEHDINLSVS   79 (256)
T ss_pred             ccCCEeCCccCCCCCCCCEEEEEECCC----cceeeeeEEeeCCEEEEChhhCCCCC----Cc-ceEEEECccccccccc
Confidence            357999999999999999999987642    25799999999999999999997742    12 77888897654433 1


Q ss_pred             Cc--eEEEeeeEEEeCCCCCC--CC-CceeEEEeCCCCCCCCCceeeeeecCCCCC-CCCCCCcEEEEecCccCCC-CCc
Q psy16044        102 KS--EVRIPVERIRVHEEFHN--YH-HDIALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPK-GDL  174 (436)
Q Consensus       102 ~~--~~~~~v~~i~~hp~y~~--~~-~DiAll~L~~~~~~~~~~v~pi~l~~~~~~-~~~~~~~~~~~GwG~~~~~-~~~  174 (436)
                      ..  .....+.++++||.|+.  .. ||||||+|++++. ++..|+|||||..... ....+..|.++|||.+... ...
T Consensus        80 ~~~~~~~~~v~~~i~H~~y~~~~~~~nDiall~l~~~v~-~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~  158 (256)
T KOG3627|consen   80 EGEEQLVGDVEKIIVHPNYNPRTLENNDIALLRLSEPVT-FSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPL  158 (256)
T ss_pred             cCchhhhceeeEEEECCCCCCCCCCCCCEEEEEECCCcc-cCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCC
Confidence            11  24445778889999984  34 9999999999999 7889999999864332 3445589999999988754 345


Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---C
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---G  251 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~  251 (436)
                      +..|++..+.+++...|...+.......+.++||+......++|+|||||||++.... +|+++||+|||.+.|+.   +
T Consensus       159 ~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~-~~~~~GivS~G~~~C~~~~~P  237 (256)
T KOG3627|consen  159 PDTLQEVDVPIISNSECRRAYGGLGTITDTMLCAGGPEGGKDACQGDSGGPLVCEDNG-RWVLVGIVSWGSGGCGQPNYP  237 (256)
T ss_pred             CceeEEEEEeEcChhHhcccccCccccCCCEEeeCccCCCCccccCCCCCeEEEeeCC-cEEEEEEEEecCCCCCCCCCC
Confidence            6789999999999999999887542344568999986666889999999999998544 89999999999986655   6


Q ss_pred             cccccccceecCCcccc
Q psy16044        252 IRYSHRQPRLINGKESI  268 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~  268 (436)
                      .+|++|..|..||.+.+
T Consensus       238 ~vyt~V~~y~~WI~~~~  254 (256)
T KOG3627|consen  238 GVYTRVSSYLDWIKENI  254 (256)
T ss_pred             eEEeEhHHhHHHHHHHh
Confidence            89999999999998654

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=100.00  E-value=6e-37  Score=277.50  Aligned_cols=223  Identities=38%  Similarity=0.723  Sum_probs=185.8

Q ss_pred             eEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceE
Q psy16044         26 RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEV  105 (436)
Q Consensus        26 ~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~  105 (436)
                      ||+||+++..++|||+|.++...     ..+.|+||||++++|||||||+....     ...+.|++|........ ...
T Consensus         1 ~~~~G~~~~~~~~Pw~~~i~~~~-----~~~~C~GtlIs~~~VLTaahC~~~~~-----~~~~~v~~g~~~~~~~~-~~~   69 (229)
T smart00020        1 RIVGGSEANIGSFPWQVSLQYRG-----GRHFCGGSLISPRWVLTAAHCVYGSD-----PSNIRVRLGSHDLSSGE-EGQ   69 (229)
T ss_pred             CccCCCcCCCCCCCcEEEEEEcC-----CCcEEEEEEecCCEEEECHHHcCCCC-----CcceEEEeCcccCCCCC-Cce
Confidence            58999999999999999998653     26889999999999999999997642     45789999987655432 226


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCC-CCCccccceeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIR  182 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~-~~~~~~~l~~~~  182 (436)
                      .+.|..++.||+|+  ...+|||||+|++|+. ++..++|+||+.. ......+..+.++|||.... .......++...
T Consensus        70 ~~~v~~~~~~p~~~~~~~~~DiAll~L~~~i~-~~~~~~pi~l~~~-~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~  147 (229)
T smart00020       70 VIKVSKVIIHPNYNPSTYDNDIALLKLKSPVT-LSDNVRPICLPSS-NYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVN  147 (229)
T ss_pred             EEeeEEEEECCCCCCCCCcCCEEEEEECcccC-CCCceeeccCCCc-ccccCCCCEEEEEeCCCCCCCCCcCCCEeeEEE
Confidence            68899999999997  4789999999999998 6678999999985 22344678999999998763 234456788999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CCcccccccc
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VGIRYSHRQP  259 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~~~y~~v~~  259 (436)
                      +.+++.+.|...+.......+.++|++......+.|.|||||||++.. + +|+|+||+|+|. .|+   .+.+|+++.+
T Consensus       148 ~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~-~-~~~l~Gi~s~g~-~C~~~~~~~~~~~i~~  224 (229)
T smart00020      148 VPIVSNATCRRAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVCND-G-RWVLVGIVSWGS-GCARPGKPGVYTRVSS  224 (229)
T ss_pred             EEEeCHHHhhhhhccccccCCCcEeecCCCCCCcccCCCCCCeeEEEC-C-CEEEEEEEEECC-CCCCCCCCCEEEEecc
Confidence            999999999988765445677999998876558899999999999975 3 999999999999 587   5678999999


Q ss_pred             eecCC
Q psy16044        260 RLING  264 (436)
Q Consensus       260 ~~~~~  264 (436)
                      +..||
T Consensus       225 ~~~WI  229 (229)
T smart00020      225 YLDWI  229 (229)
T ss_pred             ccccC
Confidence            99997

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.9e-34  Score=259.39  Aligned_cols=215  Identities=36%  Similarity=0.728  Sum_probs=178.3

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.++.+++|||+|.|+....     .++|+|+||+++||||||||+..       ...+.+.+|...........+.
T Consensus         1 i~~g~~~~~~~~p~~v~i~~~~~-----~~~C~G~li~~~~vLTaahC~~~-------~~~~~v~~g~~~~~~~~~~~~~   68 (220)
T PF00089_consen    1 IVGGDPASPGEFPWVVSIRYSNG-----RFFCTGTLISPRWVLTAAHCVDG-------ASDIKVRLGTYSIRNSDGSEQT   68 (220)
T ss_dssp             SBSSEECGTTSSTTEEEEEETTT-----EEEEEEEEEETTEEEEEGGGHTS-------GGSEEEEESESBTTSTTTTSEE
T ss_pred             CCCCEECCCCCCCeEEEEeeCCC-----CeeEeEEeccccccccccccccc-------cccccccccccccccccccccc
Confidence            68999999999999999988642     68899999999999999999976       3567888998444444444588


Q ss_pred             EeeeEEEeCCCCCC--CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~~--~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.+++++.||+|+.  ..+|||||+|++++. +...++|+|++... .....+..+.++|||.....+ ....++...+.
T Consensus        69 ~~v~~~~~h~~~~~~~~~~DiAll~L~~~~~-~~~~~~~~~l~~~~-~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~  145 (220)
T PF00089_consen   69 IKVSKIIIHPKYDPSTYDNDIALLKLDRPIT-FGDNIQPICLPSAG-SDPNVGTSCIVVGWGRTSDNG-YSSNLQSVTVP  145 (220)
T ss_dssp             EEEEEEEEETTSBTTTTTTSEEEEEESSSSE-HBSSBEESBBTSTT-HTTTTTSEEEEEESSBSSTTS-BTSBEEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccc-ccccccccccccccccccccc-ccccccccccc
Confidence            89999999999984  479999999999988 66789999999842 223678899999999976554 55678999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCC---ccccccccee
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG---IRYSHRQPRL  261 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~---~~y~~v~~~~  261 (436)
                      +++.+.|...+...  ..+.++|++.. ...+.|.|||||||++...    +|+||+|++.. |+..   .+|+++..+.
T Consensus       146 ~~~~~~c~~~~~~~--~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~----~lvGI~s~~~~-c~~~~~~~v~~~v~~~~  217 (220)
T PF00089_consen  146 VVSRKTCRSSYNDN--LTPNMICAGSS-GSGDACQGDSGGPLICNNN----YLVGIVSFGEN-CGSPNYPGVYTRVSSYL  217 (220)
T ss_dssp             EEEHHHHHHHTTTT--STTTEEEEETT-SSSBGGTTTTTSEEEETTE----EEEEEEEEESS-SSBTTSEEEEEEGGGGH
T ss_pred             cccccccccccccc--ccccccccccc-cccccccccccccccccee----eecceeeecCC-CCCCCcCEEEEEHHHhh
Confidence            99999999874332  45689999987 5589999999999998643    89999999955 6555   7899999999


Q ss_pred             cCC
Q psy16044        262 ING  264 (436)
Q Consensus       262 ~~~  264 (436)
                      +||
T Consensus       218 ~WI  220 (220)
T PF00089_consen  218 DWI  220 (220)
T ss_dssp             HHH
T ss_pred             ccC
Confidence            986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2e-28  Score=218.63  Aligned_cols=238  Identities=24%  Similarity=0.330  Sum_probs=167.2

Q ss_pred             CCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCC
Q psy16044         23 RQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEK  102 (436)
Q Consensus        23 ~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~  102 (436)
                      ...||+||..|+.++||++|++....... ....+|+|+++..|||||||||+....  ........|..+..+..    
T Consensus        29 vs~rIigGs~Anag~~P~~VaLv~~isd~-~s~tfCGgs~l~~RYvLTAAHC~~~~s--~is~d~~~vv~~l~d~S----  101 (413)
T COG5640          29 VSSRIIGGSNANAGEYPSLVALVDRISDY-VSGTFCGGSKLGGRYVLTAAHCADASS--PISSDVNRVVVDLNDSS----  101 (413)
T ss_pred             cceeEecCcccccccCchHHHHHhhcccc-cceeEeccceecceEEeeehhhccCCC--CccccceEEEecccccc----
Confidence            57899999999999999999998765431 125689999999999999999998753  12233345555444333    


Q ss_pred             ceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCC---Ccc--
Q psy16044        103 SEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG---DLV--  175 (436)
Q Consensus       103 ~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~---~~~--  175 (436)
                      ..+...|..++.|..|.  +..||+|+++|.++...--..+...--+..-...+.........+|+.+....   ..+  
T Consensus       102 q~~rg~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~pr~ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~g  181 (413)
T COG5640         102 QAERGHVRTIYVHEFYSPGNLGNDIAVLELARAASLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKG  181 (413)
T ss_pred             cccCcceEEEeeecccccccccCcceeeccccccccchhheeeccCcccceecccccccccceeeeeeeecCCCCCCCcc
Confidence            23567899999999997  68899999999997762111111111111001112233444566777654321   112  


Q ss_pred             ccceeeeeeccchhhhhhhcCC----CcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCC
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGD----SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG  251 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~  251 (436)
                      ..|++..+..++...|...++.    .....-.-+|++...  .++|+||||||++....+ ...++||+|||.+-|+..
T Consensus       182 t~l~e~~v~fv~~stc~~~~g~an~~dg~~~lT~~cag~~~--~daCqGDSGGPi~~~g~~-G~vQ~GVvSwG~~~Cg~t  258 (413)
T COG5640         182 TILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRPP--KDACQGDSGGPIFHKGEE-GRVQRGVVSWGDGGCGGT  258 (413)
T ss_pred             ceeeeeeeeeechHHhhhhccccccCCCCCCccceecCCCC--cccccCCCCCceEEeCCC-ccEEEeEEEecCCCCCCC
Confidence            3689999999999999988752    111222449998776  799999999999998644 458999999999989765


Q ss_pred             ---cccccccceecCCccccCC
Q psy16044        252 ---IRYSHRQPRLINGKESIRG  270 (436)
Q Consensus       252 ---~~y~~v~~~~~~~~~~~~~  270 (436)
                         .+||+|.-|..||.....+
T Consensus       259 ~~~gVyT~vsny~~WI~a~~~~  280 (413)
T COG5640         259 LIPGVYTNVSNYQDWIAAMTNG  280 (413)
T ss_pred             CcceeEEehhHHHHHHHHHhcC
Confidence               5899999999999875543

>KOG3627|consensus

Probab=99.94  E-value=3.4e-26  Score=210.62  Aligned_cols=158  Identities=39%  Similarity=0.769  Sum_probs=134.1

Q ss_pred             CCCcccccccc-cccceeecccccccCCCCeeeeccCCCCCC-CCCCCCeEEEEecCCCCCC-CCccccceEEEEEeeCc
Q psy16044        271 AWPWQNLITSF-LSAALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNI  347 (436)
Q Consensus       271 ~~p~~~~~~~~-~diali~l~~~~~~~~~~v~picl~~~~~~-~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~~  347 (436)
                      .||.|+..... ||||||+|.+++.++.. |+|||||..... ....+..|.++|||++... ...+..|+++.+++++.
T Consensus        94 ~H~~y~~~~~~~nDiall~l~~~v~~~~~-i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~  172 (256)
T KOG3627|consen   94 VHPNYNPRTLENNDIALLRLSEPVTFSSH-IQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPLPDTLQEVDVPIISN  172 (256)
T ss_pred             ECCCCCCCCCCCCCEEEEEECCCcccCCc-ccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCCCceeEEEEEeEcCh
Confidence            68999998877 99999999999999988 999999855442 3455689999999987654 24578899999999999


Q ss_pred             cccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHHHHH
Q psy16044        348 SVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIR  426 (436)
Q Consensus       348 ~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~WI~  426 (436)
                      ++|+..+.....+.+.|||++......++|+|||||||++... ++++|+||+|||.. |+....|++||+|+.|.+||+
T Consensus       173 ~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~-~~~~~~GivS~G~~~C~~~~~P~vyt~V~~y~~WI~  251 (256)
T KOG3627|consen  173 SECRRAYGGLGTITDTMLCAGGPEGGKDACQGDSGGPLVCEDN-GRWVLVGIVSWGSGGCGQPNYPGVYTRVSSYLDWIK  251 (256)
T ss_pred             hHhcccccCccccCCCEEeeCccCCCCccccCCCCCeEEEeeC-CcEEEEEEEEecCCCCCCCCCCeEEeEhHHhHHHHH
Confidence            9999988653235677899987656568999999999999863 48999999999988 988778999999999999999


Q ss_pred             HHHh
Q psy16044        427 KQIN  430 (436)
Q Consensus       427 ~~i~  430 (436)
                      +.+.
T Consensus       252 ~~~~  255 (256)
T KOG3627|consen  252 ENIG  255 (256)
T ss_pred             HHhc
Confidence            9875

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=99.92  E-value=2.2e-24  Score=195.41  Aligned_cols=156  Identities=41%  Similarity=0.758  Sum_probs=134.4

Q ss_pred             CCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccc
Q psy16044        270 GAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       270 ~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~  349 (436)
                      ..||.|......+|||||+|++|+.++.. ++|||||.... ....+..+.+.|||........+..++...+.+++.++
T Consensus        77 ~~hp~y~~~~~~~DiAll~L~~~~~~~~~-v~picl~~~~~-~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~  154 (232)
T cd00190          77 IVHPNYNPSTYDNDIALLKLKRPVTLSDN-VRPICLPSSGY-NLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAE  154 (232)
T ss_pred             EECCCCCCCCCcCCEEEEEECCcccCCCc-ccceECCCccc-cCCCCCEEEEEeCCcCCCCCCCCceeeEEEeeeECHHH
Confidence            35899988888999999999999999887 99999998763 45678999999999876554556789999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      |...+.....+.++++|+.........|.|||||||++.. +++++|+||+|++..|.....|.+|++|.+|++||+++
T Consensus       155 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~lvGI~s~g~~c~~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         155 CKRAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPLVCND-NGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             hhhhccCcccCCCceEeeCCCCCCCccccCCCCCcEEEEe-CCEEEEEEEEehhhccCCCCCCCEEEEcHHhhHHhhcC
Confidence            9988764335789999998765456899999999999985 58999999999999888656799999999999999864

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=99.87  E-value=9.1e-22  Score=177.99  Aligned_cols=151  Identities=42%  Similarity=0.814  Sum_probs=128.1

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCC-CCCccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~-~~~~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|......+|+|||+|++|+.+... ++||||+.... ....+..+.+.|||.... .......++...+.+++.+.
T Consensus        78 ~~p~~~~~~~~~DiAll~L~~~i~~~~~-~~pi~l~~~~~-~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  155 (229)
T smart00020       78 IHPNYNPSTYDNDIALLKLKSPVTLSDN-VRPICLPSSNY-NVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNAT  155 (229)
T ss_pred             ECCCCCCCCCcCCEEEEEECcccCCCCc-eeeccCCCccc-ccCCCCEEEEEeCCCCCCCCCcCCCEeeEEEEEEeCHHH
Confidence            4788888888999999999999998886 99999998733 345689999999998763 23345678999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI  425 (436)
                      |...+.....+.+.++|++........|.||+||||++.. + +|+|+||+|++..|...+.|.+|++|.+|++||
T Consensus       156 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~-~-~~~l~Gi~s~g~~C~~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      156 CRRAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVCND-G-RWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             hhhhhccccccCCCcEeecCCCCCCcccCCCCCCeeEEEC-C-CEEEEEEEEECCCCCCCCCCCEEEEeccccccC
Confidence            9988765335788999998765456899999999999985 4 999999999999998667799999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.83  E-value=1.8e-20  Score=168.33  Aligned_cols=145  Identities=41%  Similarity=0.810  Sum_probs=124.6

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|......+|+|||+|++++.+... ++|+||+.... ....++.+.+.||+...... ....++...+.+++.+.|
T Consensus        76 ~h~~~~~~~~~~DiAll~L~~~~~~~~~-~~~~~l~~~~~-~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~c  152 (220)
T PF00089_consen   76 IHPKYDPSTYDNDIALLKLDRPITFGDN-IQPICLPSAGS-DPNVGTSCIVVGWGRTSDNG-YSSNLQSVTVPVVSRKTC  152 (220)
T ss_dssp             EETTSBTTTTTTSEEEEEESSSSEHBSS-BEESBBTSTTH-TTTTTSEEEEEESSBSSTTS-BTSBEEEEEEEEEEHHHH
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc-cccccccccccccccccc
Confidence            5788888888999999999999988888 99999998443 34788999999999865443 456899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI  425 (436)
                      ...+..  .+.+.++|+... .....|.|||||||++...    +|+||.|++..|...+.|.+|++|+.|++||
T Consensus       153 ~~~~~~--~~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~----~lvGI~s~~~~c~~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  153 RSSYND--NLTPNMICAGSS-GSGDACQGDSGGPLICNNN----YLVGIVSFGENCGSPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             HHHTTT--TSTTTEEEEETT-SSSBGGTTTTTSEEEETTE----EEEEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred             cccccc--cccccccccccc-cccccccccccccccccee----eecceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence            987544  368899999876 4468999999999998642    8999999999998877799999999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=99.74  E-value=2.4e-17  Score=153.62  Aligned_cols=227  Identities=21%  Similarity=0.334  Sum_probs=142.6

Q ss_pred             cccccCceecCCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCC
Q psy16044          2 INLCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFS   81 (436)
Q Consensus         2 ~~~~~~~~~~~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~   81 (436)
                      |+.+||..++..||..  ......++.+|..+...+.||+|.+.......  ....++|||||+||||||+||+......
T Consensus        19 Lt~eEN~~rl~~CG~~--~~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~--~~~~~~gtlIS~RHiLtss~~~~~~~~~   94 (282)
T PF03761_consen   19 LTEEENEERLETCGKK--KLPYPSKVFNGTPAESGEAPWAVSVYTKNHNE--GNYFSTGTLISPRHILTSSHCVMNDKSK   94 (282)
T ss_pred             CCHHHHHHHHHhcCCC--CCCCcccccCCcccccCCCCCEEEEEeccCcc--cceecceEEeccCeEEEeeeEEEecccc
Confidence            5678899999999943  33355667999999999999999998765332  2466799999999999999999753221


Q ss_pred             C---CCC------cc-eEEEeccc-----cC----CccCCceEEEeeeEEEeCCCC------CCCCCceeEEEeCCCCCC
Q psy16044         82 L---PIP------EL-WTAVLGDW-----DR----TEEEKSEVRIPVERIRVHEEF------HNYHHDIALLKLSRPTSA  136 (436)
Q Consensus        82 ~---~~~------~~-~~v~~g~~-----~~----~~~~~~~~~~~v~~i~~hp~y------~~~~~DiAll~L~~~~~~  136 (436)
                      .   ...      .. ..+.+-..     ..    ...........+.++++...-      .....+++||+|+++   
T Consensus        95 W~~~~~~~~~~C~~~~~~l~vP~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~---  171 (282)
T PF03761_consen   95 WLNGEEFDNKKCEGNNNHLIVPEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED---  171 (282)
T ss_pred             cccCcccccceeeCCCceEEeCHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc---
Confidence            1   000      00 00000000     00    001111123445555542211      135679999999998   


Q ss_pred             CCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCC
Q psy16044        137 RDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG  216 (436)
Q Consensus       137 ~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~  216 (436)
                      ++....|+|||+.. .....+..+.+.|+       .....+....+.+.....|.           ..+|.     ...
T Consensus       172 ~~~~~~~~Cl~~~~-~~~~~~~~~~~yg~-------~~~~~~~~~~~~i~~~~~~~-----------~~~~~-----~~~  227 (282)
T PF03761_consen  172 FSKNVSPPCLADSS-TNWEKGDEVDVYGF-------NSTGKLKHRKLKITNCTKCA-----------YSICT-----KQY  227 (282)
T ss_pred             ccccCCCEEeCCCc-cccccCceEEEeec-------CCCCeEEEEEEEEEEeeccc-----------eeEec-----ccc
Confidence            34568999999863 33556667777777       11233555555554433211           12222     257


Q ss_pred             CccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC-Ccccccccce
Q psy16044        217 ACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV-GIRYSHRQPR  260 (436)
Q Consensus       217 ~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~-~~~y~~v~~~  260 (436)
                      .|.||+||||+... +|+|+|+||.+.+...|.. ...|.+|..+
T Consensus       228 ~~~~d~Gg~lv~~~-~gr~tlIGv~~~~~~~~~~~~~~f~~v~~~  271 (282)
T PF03761_consen  228 SCKGDRGGPLVKNI-NGRWTLIGVGASGNYECNKNNSYFFNVSWY  271 (282)
T ss_pred             cCCCCccCeEEEEE-CCCEEEEEEEccCCCcccccccEEEEHHHh
Confidence            89999999999874 8999999999988866643 3444455433

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=8.8e-15  Score=131.74  Aligned_cols=160  Identities=24%  Similarity=0.355  Sum_probs=108.8

Q ss_pred             CCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC---CCc--cccceEEEEEe
Q psy16044        270 GAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK---GDL--VSKLRQIRVPL  344 (436)
Q Consensus       270 ~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~---~~~--~~~l~~~~~~~  344 (436)
                      ..|-.|-..++.||+|+++|.++...-...+...--+..-.............+|+.+...   ...  ...++++.+..
T Consensus       112 ~~~efY~~~n~~ND~Av~~l~~~a~~pr~ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~gt~l~e~~v~f  191 (413)
T COG5640         112 YVHEFYSPGNLGNDIAVLELARAASLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLF  191 (413)
T ss_pred             eeecccccccccCcceeeccccccccchhheeeccCcccceecccccccccceeeeeeeecCCCCCCCccceeeeeeeee
Confidence            3456666778899999999999655432112111111100112233444555666643211   111  24799999999


Q ss_pred             eCccccccccCC--Ccc--CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCc
Q psy16044        345 HNISVCRDKYGD--SVE--LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLS  419 (436)
Q Consensus       345 ~~~~~C~~~~~~--~~~--~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~  419 (436)
                      .+...|.+..+.  ...  ..-.-+|++...  ++.|+||||||++.+..+| ++|+||+|||.+ |+.+..|.|||+|+
T Consensus       192 v~~stc~~~~g~an~~dg~~~lT~~cag~~~--~daCqGDSGGPi~~~g~~G-~vQ~GVvSwG~~~Cg~t~~~gVyT~vs  268 (413)
T COG5640         192 VPLSTCAQYKGCANASDGATGLTGFCAGRPP--KDACQGDSGGPIFHKGEEG-RVQRGVVSWGDGGCGGTLIPGVYTNVS  268 (413)
T ss_pred             echHHhhhhccccccCCCCCCccceecCCCC--cccccCCCCCceEEeCCCc-cEEEeEEEecCCCCCCCCcceeEEehh
Confidence            999999988741  111  112239998765  6999999999999986444 589999999987 99989999999999


Q ss_pred             ccHHHHHHHHhhh
Q psy16044        420 FYLPWIRKQINIA  432 (436)
Q Consensus       420 ~~~~WI~~~i~~~  432 (436)
                      .|.+||...|+..
T Consensus       269 ny~~WI~a~~~~l  281 (413)
T COG5640         269 NYQDWIAAMTNGL  281 (413)
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999988643

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.48  E-value=1.3e-12  Score=112.11  Aligned_cols=117  Identities=23%  Similarity=0.477  Sum_probs=90.0

Q ss_pred             CCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEecccc--CCccCCceEEEeeeEE
Q psy16044         35 RGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWD--RTEEEKSEVRIPVERI  112 (436)
Q Consensus        35 ~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~--~~~~~~~~~~~~v~~i  112 (436)
                      .-.|||.|.|+..+      .++|+|+||.+.|||++..|+.+-..   ...-+.|.+|...  +....+.+|.+.|..+
T Consensus        13 ~y~WPWlA~IYvdG------~~~CsgvLlD~~WlLvsssCl~~I~L---~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~   83 (267)
T PF09342_consen   13 DYHWPWLADIYVDG------RYWCSGVLLDPHWLLVSSSCLRGISL---SHHYVSALLGGGKTYLSVDGPHEQISRVDCF   83 (267)
T ss_pred             cccCcceeeEEEcC------eEEEEEEEeccceEEEeccccCCccc---ccceEEEEecCcceecccCCChheEEEeeee
Confidence            34699999999875      78999999999999999999976322   1244678888654  2235566777777776


Q ss_pred             EeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCc
Q psy16044        113 RVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  167 (436)
Q Consensus       113 ~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~  167 (436)
                      ..-|.     .+++||.|++|+. |+.+|+|..||.. .........|.++|-..
T Consensus        84 ~~V~~-----S~v~LLHL~~~~~-fTr~VlP~flp~~-~~~~~~~~~CVAVg~d~  131 (267)
T PF09342_consen   84 KDVPE-----SNVLLLHLEQPAN-FTRYVLPTFLPET-SNENESDDECVAVGHDD  131 (267)
T ss_pred             eeccc-----cceeeeeecCccc-ceeeecccccccc-cCCCCCCCceEEEEccc
Confidence            65555     7999999999999 8999999999974 33344556999999543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=98.67  E-value=2.5e-07  Score=82.03  Aligned_cols=177  Identities=20%  Similarity=0.191  Sum_probs=93.5

Q ss_pred             cCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEe-ccccCCccCCceEEEeeeE
Q psy16044         33 SIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVL-GDWDRTEEEKSEVRIPVER  111 (436)
Q Consensus        33 a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~~~v~~  111 (436)
                      ....+|||-+-.......+   ..-|+++||+++.||||+||+.+....  . ..+.+.. |.......   ...+....
T Consensus        44 ~dt~~~Py~av~~~~~~tG---~~~~~~~lI~pntvLTa~Hc~~s~~~G--~-~~~~~~p~g~~~~~~~---~~~~~~~~  114 (251)
T COG3591          44 TDTTQFPYSAVVQFEAATG---RLCTAATLIGPNTVLTAGHCIYSPDYG--E-DDIAAAPPGVNSDGGP---FYGITKIE  114 (251)
T ss_pred             ccCCCCCcceeEEeecCCC---cceeeEEEEcCceEEEeeeEEecCCCC--h-hhhhhcCCcccCCCCC---CCceeeEE
Confidence            4467899998886654332   445777999999999999999775321  0 1122221 22211111   11222223


Q ss_pred             EEeCCC-C---CCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccc
Q psy16044        112 IRVHEE-F---HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN  187 (436)
Q Consensus       112 i~~hp~-y---~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~  187 (436)
                      +...|. +   +....|+..+.|+...+ +...+....++..  .....+....++||-......   ..+.+..-.+..
T Consensus       115 ~~~~~g~~~~~d~~~~~v~~~~~~~g~~-~~~~~~~~~~~~~--~~~~~~d~i~v~GYP~dk~~~---~~~~e~t~~v~~  188 (251)
T COG3591         115 IRVYPGELYKEDGASYDVGEAALESGIN-IGDVVNYLKRNTA--SEAKANDRITVIGYPGDKPNI---GTMWESTGKVNS  188 (251)
T ss_pred             EEecCCceeccCCceeeccHHHhccCCC-ccccccccccccc--cccccCceeEEEeccCCCCcc---eeEeeecceeEE
Confidence            323443 2   24556777777774443 2333343333332  233445558999986544210   001111000000


Q ss_pred             hhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        188 ISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       188 ~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      .+              ..+    ..-..+++.|+||+|++....    +++||.+-|..
T Consensus       189 ~~--------------~~~----l~y~~dT~pG~SGSpv~~~~~----~vigv~~~g~~  225 (251)
T COG3591         189 IK--------------GNK----LFYDADTLPGSSGSPVLISKD----EVIGVHYNGPG  225 (251)
T ss_pred             Ee--------------cce----EEEEecccCCCCCCceEecCc----eEEEEEecCCC
Confidence            00              000    001268999999999997532    89999988765

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=98.27  E-value=4e-06  Score=78.21  Aligned_cols=121  Identities=26%  Similarity=0.504  Sum_probs=82.8

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCcc
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE  359 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  359 (436)
                      ...+.+||+|+++  +... ..|+|||.... ....++...+.|+.       ....+....+++.....|..       
T Consensus       159 ~~~~~mIlEl~~~--~~~~-~~~~Cl~~~~~-~~~~~~~~~~yg~~-------~~~~~~~~~~~i~~~~~~~~-------  220 (282)
T PF03761_consen  159 RPYSPMILELEED--FSKN-VSPPCLADSST-NWEKGDEVDVYGFN-------STGKLKHRKLKITNCTKCAY-------  220 (282)
T ss_pred             cccceEEEEEccc--cccc-CCCEEeCCCcc-ccccCceEEEeecC-------CCCeEEEEEEEEEEeeccce-------
Confidence            3467789999999  5555 89999997765 35566777777771       12335555555554322111       


Q ss_pred             CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        360 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       360 ~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                          .+|     ..+..|.+|+||||+-.. +++|+|+||.+.+. .|...  ...|.+|..|.+=|.+..+
T Consensus       221 ----~~~-----~~~~~~~~d~Gg~lv~~~-~gr~tlIGv~~~~~~~~~~~--~~~f~~v~~~~~~IC~ltG  280 (282)
T PF03761_consen  221 ----SIC-----TKQYSCKGDRGGPLVKNI-NGRWTLIGVGASGNYECNKN--NSYFFNVSWYQDEICELTG  280 (282)
T ss_pred             ----eEe-----cccccCCCCccCeEEEEE-CCCEEEEEEEccCCCccccc--ccEEEEHHHhhhhhcccee
Confidence                122     224789999999999875 89999999998765 34322  5789999999887766543

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.19  E-value=2.2e-05  Score=77.59  Aligned_cols=85  Identities=19%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             CeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCC
Q psy16044         55 PHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRP  133 (436)
Q Consensus        55 ~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~  133 (436)
                      ...++|.+|+++ +|||++|++.+.       ..+.|.+...         ..+..+-+..++.     .||||||++.+
T Consensus        57 ~~~GSGfii~~~G~IlTn~Hvv~~~-------~~i~V~~~~~---------~~~~a~vv~~d~~-----~DlAllkv~~~  115 (428)
T TIGR02037        57 RGLGSGVIISADGYILTNNHVVDGA-------DEITVTLSDG---------REFKAKLVGKDPR-----TDIAVLKIDAK  115 (428)
T ss_pred             cceeeEEEECCCCEEEEcHHHcCCC-------CeEEEEeCCC---------CEEEEEEEEecCC-----CCEEEEEecCC
Confidence            467999999986 999999999663       4455555321         2234444444544     69999999864


Q ss_pred             CCCCCCceeeeeecCCCCCCCCCCCcEEEEecCc
Q psy16044        134 TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  167 (436)
Q Consensus       134 ~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~  167 (436)
                      .     .+.++.|.+.  ..+..++.+.++|+..
T Consensus       116 ~-----~~~~~~l~~~--~~~~~G~~v~aiG~p~  142 (428)
T TIGR02037       116 K-----NLPVIKLGDS--DKLRVGDWVLAIGNPF  142 (428)
T ss_pred             C-----CceEEEccCC--CCCCCCCEEEEEECCC
Confidence            2     2567777653  3456899999999864

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.06  E-value=0.00012  Score=70.08  Aligned_cols=160  Identities=18%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             CCCcceEEEeeeccCCC-----CCCeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEee
Q psy16044         36 GAWPWQVSLQVLHPRLG-----LMPHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPV  109 (436)
Q Consensus        36 ~~~Pw~v~i~~~~~~~~-----~~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v  109 (436)
                      .--|-+|.|........     ......+|.+|+++ +|||++|.+...       ..+.|.+..         ...+..
T Consensus        53 ~~~psVV~I~~~~~~~~~~~~~~~~~~GSG~vi~~~G~IlTn~HVV~~~-------~~i~V~~~d---------g~~~~a  116 (351)
T TIGR02038        53 RAAPAVVNIYNRSISQNSLNQLSIQGLGSGVIMSKEGYILTNYHVIKKA-------DQIVVALQD---------GRKFEA  116 (351)
T ss_pred             hcCCcEEEEEeEeccccccccccccceEEEEEEeCCeEEEecccEeCCC-------CEEEEEECC---------CCEEEE
Confidence            44699999976432110     11346999999977 999999998652       345555432         122344


Q ss_pred             eEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchh
Q psy16044        110 ERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  189 (436)
Q Consensus       110 ~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~  189 (436)
                      +-+..+|.     .||||||++.+-      +.++.+..  ...+..++.+.++|+......     ......+.-+...
T Consensus       117 ~vv~~d~~-----~DlAvlkv~~~~------~~~~~l~~--s~~~~~G~~V~aiG~P~~~~~-----s~t~GiIs~~~r~  178 (351)
T TIGR02038       117 ELVGSDPL-----TDLAVLKIEGDN------LPTIPVNL--DRPPHVGDVVLAIGNPYNLGQ-----TITQGIISATGRN  178 (351)
T ss_pred             EEEEecCC-----CCEEEEEecCCC------CceEeccC--cCccCCCCEEEEEeCCCCCCC-----cEEEEEEEeccCc
Confidence            44444544     799999998541      23444433  345678999999998642211     1111111111110


Q ss_pred             hhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEc
Q psy16044        190 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG  244 (436)
Q Consensus       190 ~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g  244 (436)
                      .    +...  .....+=+     ......|.|||||+-.  +|  .++||.+..
T Consensus       179 ~----~~~~--~~~~~iqt-----da~i~~GnSGGpl~n~--~G--~vIGI~~~~  218 (351)
T TIGR02038       179 G----LSSV--GRQNFIQT-----DAAINAGNSGGALINT--NG--ELVGINTAS  218 (351)
T ss_pred             c----cCCC--CcceEEEE-----CCccCCCCCcceEECC--CC--eEEEEEeee
Confidence            0    0000  00011111     1456789999999953  34  499998764

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=97.94  E-value=0.00035  Score=66.98  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=64.6

Q ss_pred             CCCcceEEEeeeccCCC-----CCCeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEee
Q psy16044         36 GAWPWQVSLQVLHPRLG-----LMPHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPV  109 (436)
Q Consensus        36 ~~~Pw~v~i~~~~~~~~-----~~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v  109 (436)
                      .--|-+|.|........     .....-+|.+|+++ +|||++|=+.+.       ..+.|.+...         ..+..
T Consensus        53 ~~~psvV~v~~~~~~~~~~~~~~~~~~GSGfvi~~~G~IlTn~HVv~~a-------~~i~V~~~dg---------~~~~a  116 (353)
T PRK10898         53 RAAPAVVNVYNRSLNSTSHNQLEIRTLGSGVIMDQRGYILTNKHVINDA-------DQIIVALQDG---------RVFEA  116 (353)
T ss_pred             HhCCcEEEEEeEeccccCcccccccceeeEEEEeCCeEEEecccEeCCC-------CEEEEEeCCC---------CEEEE
Confidence            34588998876532111     01256999999976 999999988652       4455655321         22334


Q ss_pred             eEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCc
Q psy16044        110 ERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  167 (436)
Q Consensus       110 ~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~  167 (436)
                      +-+...|.     .||||||++.+ .     ..++.+..  ...+..+..+.++|+..
T Consensus       117 ~vv~~d~~-----~DlAvl~v~~~-~-----l~~~~l~~--~~~~~~G~~V~aiG~P~  161 (353)
T PRK10898        117 LLVGSDSL-----TDLAVLKINAT-N-----LPVIPINP--KRVPHIGDVVLAIGNPY  161 (353)
T ss_pred             EEEEEcCC-----CCEEEEEEcCC-C-----CCeeeccC--cCcCCCCCEEEEEeCCC
Confidence            43444544     79999999753 1     23444443  23456789999999853

>PRK10139 serine endoprotease; Provisional

Probab=97.90  E-value=0.00014  Score=72.00  Aligned_cols=142  Identities=21%  Similarity=0.228  Sum_probs=81.7

Q ss_pred             CeeeEEEEecC--CEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCC
Q psy16044         55 PHWCGAVLIHP--SWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSR  132 (436)
Q Consensus        55 ~~~C~GtLIs~--~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~  132 (436)
                      ....+|.+|++  -+|||++|.+.+.       ..+.|.+...         ..+..+-+...|.     .||||||++.
T Consensus        89 ~~~GSG~ii~~~~g~IlTn~HVv~~a-------~~i~V~~~dg---------~~~~a~vvg~D~~-----~DlAvlkv~~  147 (455)
T PRK10139         89 EGLGSGVIIDAAKGYVLTNNHVINQA-------QKISIQLNDG---------REFDAKLIGSDDQ-----SDIALLQIQN  147 (455)
T ss_pred             cceEEEEEEECCCCEEEeChHHhCCC-------CEEEEEECCC---------CEEEEEEEEEcCC-----CCEEEEEecC
Confidence            35799999974  6999999998653       4566665321         2344444445554     7999999985


Q ss_pred             CCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCC
Q psy16044        133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD  212 (436)
Q Consensus       133 ~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~  212 (436)
                      +-.     ..++.|.+.  ..+..++.+.++|+.....     .......+.-+....    ..  .......+=+    
T Consensus       148 ~~~-----l~~~~lg~s--~~~~~G~~V~aiG~P~g~~-----~tvt~GivS~~~r~~----~~--~~~~~~~iqt----  205 (455)
T PRK10139        148 PSK-----LTQIAIADS--DKLRVGDFAVAVGNPFGLG-----QTATSGIISALGRSG----LN--LEGLENFIQT----  205 (455)
T ss_pred             CCC-----CceeEecCc--cccCCCCEEEEEecCCCCC-----CceEEEEEccccccc----cC--CCCcceEEEE----
Confidence            422     446666653  4466799999999742111     111111111111100    00  0000011111    


Q ss_pred             CCCCCccCCCCCeeeeEecCCcEEEEEEEeEc
Q psy16044        213 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFG  244 (436)
Q Consensus       213 ~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g  244 (436)
                       ....-.|.|||||+-.  +|  .++||.+..
T Consensus       206 -da~in~GnSGGpl~n~--~G--~vIGi~~~~  232 (455)
T PRK10139        206 -DASINRGNSGGALLNL--NG--ELIGINTAI  232 (455)
T ss_pred             -CCccCCCCCcceEECC--CC--eEEEEEEEE
Confidence             2556789999999953  34  399999874

>PRK10942 serine endoprotease; Provisional

Probab=97.81  E-value=0.0003  Score=70.11  Aligned_cols=84  Identities=24%  Similarity=0.330  Sum_probs=56.4

Q ss_pred             CeeeEEEEecC--CEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCC
Q psy16044         55 PHWCGAVLIHP--SWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSR  132 (436)
Q Consensus        55 ~~~C~GtLIs~--~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~  132 (436)
                      ....+|.+|+.  -+|||++|.+.+       ...+.|.+...         ..+..+-+..+|.     .||||||++.
T Consensus       110 ~~~GSG~ii~~~~G~IlTn~HVv~~-------a~~i~V~~~dg---------~~~~a~vv~~D~~-----~DlAvlki~~  168 (473)
T PRK10942        110 MALGSGVIIDADKGYVVTNNHVVDN-------ATKIKVQLSDG---------RKFDAKVVGKDPR-----SDIALIQLQN  168 (473)
T ss_pred             cceEEEEEEECCCCEEEeChhhcCC-------CCEEEEEECCC---------CEEEEEEEEecCC-----CCEEEEEecC
Confidence            35799999985  499999999865       24566665421         2234444445554     7999999975


Q ss_pred             CCCCCCCceeeeeecCCCCCCCCCCCcEEEEecC
Q psy16044        133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWG  166 (436)
Q Consensus       133 ~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG  166 (436)
                      +-.     ..++.|.+  ...+..+..+.++|+-
T Consensus       169 ~~~-----l~~~~lg~--s~~l~~G~~V~aiG~P  195 (473)
T PRK10942        169 PKN-----LTAIKMAD--SDALRVGDYTVAIGNP  195 (473)
T ss_pred             CCC-----CceeEecC--ccccCCCCEEEEEcCC
Confidence            322     34566654  3446678999999864

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=97.29  E-value=0.00042  Score=55.19  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=19.4

Q ss_pred             eEEEEecCC-EEEecCCCcCCC
Q psy16044         58 CGAVLIHPS-WVVTAAHCIHND   78 (436)
Q Consensus        58 C~GtLIs~~-~VLTAAhC~~~~   78 (436)
                      |+|.+|.++ +|||||||+...
T Consensus         1 GTGf~i~~~g~ilT~~Hvv~~~   22 (120)
T PF13365_consen    1 GTGFLIGPDGYILTAAHVVEDW   22 (120)
T ss_dssp             EEEEEEETTTEEEEEHHHHTCC
T ss_pred             CEEEEEcCCceEEEchhheecc
Confidence            799999999 999999999764

...

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.15  E-value=0.031  Score=58.49  Aligned_cols=66  Identities=18%  Similarity=0.193  Sum_probs=36.9

Q ss_pred             EEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCCCCCC
Q psy16044         59 GAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARD  138 (436)
Q Consensus        59 ~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~  138 (436)
                      ..|||+|++|+|++|=....         -.|.+|....       ..+.+..--.|+.     .|..+-||.+=|.   
T Consensus        68 ~aTLigpqYiVSV~HN~~gy---------~~v~FG~~g~-------~~Y~iV~RNn~~~-----~Df~~pRLnK~VT---  123 (769)
T PF02395_consen   68 VATLIGPQYIVSVKHNGKGY---------NSVSFGNEGQ-------NTYKIVDRNNYPS-----GDFHMPRLNKFVT---  123 (769)
T ss_dssp             S-EEEETTEEEBETTG-TSC---------CEECESCSST-------CEEEEEEEEBETT-----STEBEEEESS------
T ss_pred             eEEEecCCeEEEEEccCCCc---------CceeecccCC-------ceEEEEEccCCCC-----cccceeecCceEE---
Confidence            38999999999999986221         2577776432       2233333333433     5999999998665   


Q ss_pred             CceeeeeecCC
Q psy16044        139 KGVRAVCLTDA  149 (436)
Q Consensus       139 ~~v~pi~l~~~  149 (436)
                       .+.|+.....
T Consensus       124 -EvaP~~~t~~  133 (769)
T PF02395_consen  124 -EVAPAEMTTA  133 (769)
T ss_dssp             -SS----BBSS
T ss_pred             -EEeccccccc
Confidence             2677766553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.68  E-value=0.17  Score=44.55  Aligned_cols=45  Identities=22%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCC
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  326 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~  326 (436)
                      ...+++|++|++|+.|+.+ |+|..||+... .+.....|...|-..
T Consensus        87 ~~S~v~LLHL~~~~~fTr~-VlP~flp~~~~-~~~~~~~CVAVg~d~  131 (267)
T PF09342_consen   87 PESNVLLLHLEQPANFTRY-VLPTFLPETSN-ENESDDECVAVGHDD  131 (267)
T ss_pred             cccceeeeeecCcccceee-ecccccccccC-CCCCCCceEEEEccc
Confidence            4688999999999999999 99999997544 344555999998664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.18  E-value=0.53  Score=49.64  Aligned_cols=54  Identities=26%  Similarity=0.425  Sum_probs=32.5

Q ss_pred             CCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHhhh
Q psy16044        375 GACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       375 ~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      ..-.||||+||+.-+ +..+|+|+|+.+.+.+.....  ..++-+.  .+|+++.+.+.
T Consensus       212 ~~~~GDSGSPlF~YD~~~kKWvl~Gv~~~~~~~~g~~--~~~~~~~--~~f~~~~~~~d  266 (769)
T PF02395_consen  212 YGSPGDSGSPLFAYDKEKKKWVLVGVLSGGNGYNGKG--NWWNVIP--PDFINQIKQND  266 (769)
T ss_dssp             B--TT-TT-EEEEEETTTTEEEEEEEEEEECCCCHSE--EEEEEEC--HHHHHHHHHHC
T ss_pred             ccccCcCCCceEEEEccCCeEEEEEEEccccccCCcc--ceeEEec--HHHHHHHHhhh
Confidence            355699999998876 577999999999876543322  3343332  45555555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=85.09  E-value=5.3  Score=39.58  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=28.0

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCC
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  326 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~  326 (436)
                      ...|+|||+++.+    .. ..++.|....  ....++.+++.|+..
T Consensus       103 ~~~DlAllkv~~~----~~-~~~~~l~~~~--~~~~G~~v~aiG~p~  142 (428)
T TIGR02037       103 PRTDIAVLKIDAK----KN-LPVIKLGDSD--KLRVGDWVLAIGNPF  142 (428)
T ss_pred             CCCCEEEEEecCC----CC-ceEEEccCCC--CCCCCCEEEEEECCC
Confidence            3579999999865    12 5566665332  357899999999864

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=82.07  E-value=27  Score=33.49  Aligned_cols=144  Identities=21%  Similarity=0.220  Sum_probs=75.2

Q ss_pred             eeeEEEEec-CCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCC
Q psy16044         56 HWCGAVLIH-PSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPT  134 (436)
Q Consensus        56 ~~C~GtLIs-~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~  134 (436)
                      ...+|.+++ ..+|||..|=+..       ...+.+.+.         ....+..+.+-..+     ..|+|+||.+..-
T Consensus        72 ~~gSg~i~~~~g~ivTn~hVi~~-------a~~i~v~l~---------dg~~~~a~~vg~d~-----~~dlavlki~~~~  130 (347)
T COG0265          72 GLGSGFIISSDGYIVTNNHVIAG-------AEEITVTLA---------DGREVPAKLVGKDP-----ISDLAVLKIDGAG  130 (347)
T ss_pred             ccccEEEEcCCeEEEecceecCC-------cceEEEEeC---------CCCEEEEEEEecCC-----ccCEEEEEeccCC
Confidence            678999999 7899999998754       234444441         11334444443333     3799999998653


Q ss_pred             CCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCC
Q psy16044        135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF  214 (436)
Q Consensus       135 ~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~  214 (436)
                      .     ...+.+..  ...+..++...+.|-..-.     ........+..+... +-.....    ....+     ...
T Consensus       131 ~-----~~~~~~~~--s~~l~vg~~v~aiGnp~g~-----~~tvt~Givs~~~r~-~v~~~~~----~~~~I-----qtd  188 (347)
T COG0265         131 G-----LPVIALGD--SDKLRVGDVVVAIGNPFGL-----GQTVTSGIVSALGRT-GVGSAGG----YVNFI-----QTD  188 (347)
T ss_pred             C-----CceeeccC--CCCcccCCEEEEecCCCCc-----ccceeccEEeccccc-cccCccc----ccchh-----hcc
Confidence            2     22333333  2334456666677643221     011111112222211 1110000    00111     111


Q ss_pred             CCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        215 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       215 ~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      ...+.|.||||++..  ++  .++||.+....
T Consensus       189 Aain~gnsGgpl~n~--~g--~~iGint~~~~  216 (347)
T COG0265         189 AAINPGNSGGPLVNI--DG--EVVGINTAIIA  216 (347)
T ss_pred             cccCCCCCCCceEcC--CC--cEEEEEEEEec
Confidence            568899999999963  33  49998887654

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=81.20  E-value=2.6  Score=37.94  Aligned_cols=52  Identities=23%  Similarity=0.369  Sum_probs=35.1

Q ss_pred             CCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcc-cHHHHHHHHh
Q psy16044        375 GACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSF-YLPWIRKQIN  430 (436)
Q Consensus       375 ~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~-~~~WI~~~i~  430 (436)
                      +++.|+||+|+.....    +++||.+-+..-.......-.+|+.. +++||++.++
T Consensus       199 dT~pG~SGSpv~~~~~----~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~~  251 (251)
T COG3591         199 DTLPGSSGSPVLISKD----EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNIK  251 (251)
T ss_pred             cccCCCCCCceEecCc----eEEEEEecCCCcccccccCcceEecHHHHHHHHHhhC
Confidence            7888999999987642    79999988764322122233444444 7889887653

>PRK10898 serine endoprotease; Provisional

Probab=80.99  E-value=10  Score=36.48  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=25.4

Q ss_pred             ccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCC
Q psy16044        279 TSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  326 (436)
Q Consensus       279 ~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~  326 (436)
                      ....|+||||++.+ .     ..++.|..  ......++.+++.|+..
T Consensus       122 d~~~DlAvl~v~~~-~-----l~~~~l~~--~~~~~~G~~V~aiG~P~  161 (353)
T PRK10898        122 DSLTDLAVLKINAT-N-----LPVIPINP--KRVPHIGDVVLAIGNPY  161 (353)
T ss_pred             cCCCCEEEEEEcCC-C-----CCeeeccC--cCcCCCCCEEEEEeCCC
Confidence            34689999999764 1     22233322  22456899999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	436
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		1e-29
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		2e-16
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		3e-28
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		3e-14
2any_A	241	Expression, Crystallization And The Three-Dimension		3e-28
2any_A	241	Expression, Crystallization And The Three-Dimension		6e-19
2anw_A	241	Expression, Crystallization And Three-Dimensional S		8e-28
2anw_A	241	Expression, Crystallization And Three-Dimensional S		8e-19
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		1e-27
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		3e-14
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		1e-27
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		3e-16
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		2e-27
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		3e-14
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		3e-27
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		3e-16
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		1e-26
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		1e-17
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		4e-26
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		8e-17
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		5e-26
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		8e-17
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		5e-26
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		1e-16
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		5e-26
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		5e-14
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		6e-26
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		8e-17
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		7e-26
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		4e-16
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		7e-26
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		1e-16
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		9e-26
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		1e-16
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		1e-25
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		8e-17
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		1e-25
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		8e-16
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-25
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-16
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		1e-25
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		1e-16
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		1e-25
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		8e-16
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		1e-25
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		8e-16
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		2e-25
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		5e-18
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-25
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		1e-16
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-25
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		1e-16
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		3e-25
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		3e-16
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		4e-25
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		2e-15
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		8e-25
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		4e-16
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		9e-25
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		4e-16
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		9e-25
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		5e-15
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		1e-24
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		1e-17
1lto_A	245	Human Alpha1-Tryptase Length = 245		1e-24
1lto_A	245	Human Alpha1-Tryptase Length = 245		7e-16
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		1e-24
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		1e-15
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		2e-24
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		7e-16
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		2e-24
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		8e-16
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		2e-24
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		8e-16
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		2e-24
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		8e-16
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		2e-24
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		3e-16
1aut_C	250	Human Activated Protein C Length = 250		4e-24
1aut_C	250	Human Activated Protein C Length = 250		4e-13
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		4e-24
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		4e-13
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		4e-24
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		9e-16
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		9e-23
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		4e-15
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		6e-22
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		2e-13
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		8e-22
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		2e-13
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		1e-21
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		7e-19
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		1e-21
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		7e-19
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		1e-21
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		7e-19
1pfx_C	235	Porcine Factor Ixa Length = 235		1e-21
1pfx_C	235	Porcine Factor Ixa Length = 235		2e-13
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		2e-21
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		5e-14
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		2e-21
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		2e-13
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		2e-21
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		4e-15
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		2e-21
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		4e-14
1kig_H	241	Bovine Factor Xa Length = 241		3e-21
1kig_H	241	Bovine Factor Xa Length = 241		9e-16
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		5e-21
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		2e-13
1elt_A	236	Structure Of Native Pancreatic Elastase From North		6e-21
1elt_A	236	Structure Of Native Pancreatic Elastase From North		9e-13
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		6e-21
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		3e-13
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		6e-21
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		1e-13
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		1e-20
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		8e-17
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		1e-20
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		8e-17
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		1e-20
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		3e-13
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		2e-20
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		3e-13
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		2e-20
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		3e-13
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		3e-20
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		3e-15
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		5e-20
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		4e-14
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		7e-20
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		1e-13
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		8e-20
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		2e-15
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		1e-19
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		5e-17
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		1e-19
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		2e-09
2xrc_A	565	Human Complement Factor I Length = 565		1e-19
2xrc_A	565	Human Complement Factor I Length = 565		3e-13
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		3e-19
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		3e-09
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		4e-19
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		7e-12
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		7e-19
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		2e-09
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		8e-19
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		1e-12
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		1e-18
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		6e-14
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		1e-18
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		4e-14
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		1e-18
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		2e-11
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		2e-18
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		3e-11
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		2e-18
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		3e-11
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		2e-18
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		4e-17
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		2e-18
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		2e-14
2bok_A	241	Factor Xa- Cation Length = 241		2e-18
2bok_A	241	Factor Xa- Cation Length = 241		2e-14
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		5e-18
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		8e-16
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		5e-18
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		6e-12
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		6e-18
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		5e-14
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		6e-18
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		5e-14
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		6e-18
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		5e-14
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		6e-18
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		5e-14
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		7e-18
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		3e-11
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		7e-18
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		5e-14
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		7e-18
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		6e-13
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		7e-18
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		5e-14
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		8e-18
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		5e-14
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		9e-18
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		3e-13
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		1e-17
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		2e-10
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		1e-17
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		7e-13
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		1e-17
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		1e-09
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		1e-17
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		1e-09
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		1e-17
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		4e-13
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		1e-17
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		9e-10
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		1e-17
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		1e-09
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		1e-17
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		1e-09
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		1e-17
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		1e-09
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		1e-17
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		6e-14
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		1e-17
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		1e-09
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		1e-17
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		1e-13
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		1e-17
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		9e-10
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		1e-17
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		6e-13
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		1e-17
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		2e-14
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		2e-17
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		6e-13
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		2e-17
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		1e-09
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		2e-17
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		7e-13
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		2e-17
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		5e-16
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		2e-17
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		7e-13
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		2e-17
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		2e-09
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		2e-17
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		1e-09
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		2e-17
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		2e-14
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		3e-17
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		6e-14
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		3e-17
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		2e-09
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		3e-17
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		2e-14
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		3e-17
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		2e-09
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		3e-17
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		9e-16
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		3e-17
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		6e-12
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		4e-17
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		2e-14
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		4e-17
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		2e-12
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		4e-17
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		6e-16
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		4e-17
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		8e-16
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		4e-17
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		3e-14
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		4e-17
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		9e-16
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		4e-17
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		6e-14
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		4e-17
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		6e-14
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		4e-17
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		2e-09
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		4e-17
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		1e-15
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		4e-17
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		8e-16
2a31_A	223	Trypsin In Complex With Borate Length = 223		5e-17
2a31_A	223	Trypsin In Complex With Borate Length = 223		2e-14
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		5e-17
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		2e-11
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		5e-17
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		1e-15
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		5e-17
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		2e-10
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		5e-17
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		8e-10
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		5e-17
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		9e-10
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		5e-17
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		5e-16
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		5e-17
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		9e-10
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		5e-17
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		9e-10
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		5e-17
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		2e-09
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		6e-17
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		6e-09
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		6e-17
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		1e-09
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		6e-17
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		1e-09
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		6e-17
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		2e-12
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		6e-17
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		1e-15
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		6e-17
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		9e-10
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		6e-17
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		2e-12
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		7e-17
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		8e-11
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		7e-17
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		2e-15
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		7e-17
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		2e-12
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		8e-17
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		4e-15
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		8e-17
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		2e-15
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		8e-17
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		2e-09
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		8e-17
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		2e-09
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		8e-17
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		3e-12
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		8e-17
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		7e-11
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		8e-17
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		9e-10
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		8e-17
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		3e-12
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		8e-17
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		6e-12
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		8e-17
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		6e-12
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		9e-17
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		6e-12
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		9e-17
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		2e-09
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		1e-16
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		5e-12
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		1e-16
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		8e-12
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		1e-16
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		3e-09
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		1e-16
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		2e-09
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		1e-16
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		1e-09
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		1e-16
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		9e-10
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		1e-16
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		2e-09
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		1e-16
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		3e-12
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		1e-16
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		1e-11
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		1e-16
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		3e-15
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		1e-16
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		3e-12
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		1e-16
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		2e-09
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		2e-16
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		8e-10
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		2e-16
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		2e-12
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		2e-16
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		3e-09
1fuj_A	221	Pr3 (Myeloblastin) Length = 221		3e-16
1fuj_A	221	Pr3 (Myeloblastin) Length = 221		4e-10
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		3e-16
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		1e-11
3fzz_A	227	Structure Of Grc Length = 227		3e-16
3fzz_A	227	Structure Of Grc Length = 227		1e-10
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		4e-16
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		6e-09
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		4e-16
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		6e-08
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		5e-16
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		6e-12
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		5e-16
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		9e-11
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		5e-16
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		3e-11
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		6e-16
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		8e-14
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		7e-16
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-09
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		8e-16
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		3e-09
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		9e-16
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		5e-08
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		1e-15
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		1e-07
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		1e-15
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-13
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		2e-15
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		7e-13
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		2e-15
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		3e-13
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		2e-15
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		2e-13
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		2e-15
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		1e-07
1kdq_A	131	Crystal Structure Analysis Of The Mutant S189d Rat		2e-15
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		2e-15
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		1e-10
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		3e-15
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		1e-08
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-15
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		2e-12
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		3e-15
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		3e-13
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		4e-15
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		5e-13
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		4e-15
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-12
2jet_B	128	Crystal Structure Of A Trypsin-Like Mutant (S189d,		4e-15
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		4e-15
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		2e-08
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		5e-15
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		2e-08
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		5e-15
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		6e-13
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		5e-15
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		8e-13
1mtn_B	131	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		7e-15
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		7e-15
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		9e-13
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-14
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		4e-12
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-14
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-12
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		1e-14
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		1e-07
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		1e-14
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		5e-12
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		1e-14
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		1e-07
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		2e-14
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		1e-08
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		2e-14
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		6e-07
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		2e-14
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		5e-12
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		2e-14
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		8e-12
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		3e-14
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		9e-10
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		3e-14
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		6e-13
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		4e-14
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		7e-13
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		6e-14
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		5e-10
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		6e-14
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		4e-10
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		6e-14
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		4e-07
2kai_B	152	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		6e-14
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		7e-14
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		8e-09
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		7e-14
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		1e-12
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		9e-14
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		1e-12
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		1e-13
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-12
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		1e-13
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		1e-11
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		1e-13
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		3e-08
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		2e-13
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		8e-11
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		3e-13
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		5e-10
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		3e-13
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		1e-07
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		3e-13
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		1e-06
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		4e-13
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		5e-10
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		5e-13
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		9e-12
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		6e-13
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		6e-10
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		6e-13
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		3e-06
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		6e-13
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		9e-10
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		6e-13
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		5e-10
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		6e-13
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		1e-05
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		7e-13
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		3e-06
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		7e-13
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		1e-07
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		7e-13
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		6e-10
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		7e-13
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		1e-10
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		7e-13
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		3e-10
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		7e-13
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		3e-06
1b0f_A	218	Crystal Structure Of Human Neutrophil Elastase With		7e-13
1b0f_A	218	Crystal Structure Of Human Neutrophil Elastase With		3e-06
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		9e-13
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		2e-04
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		9e-13
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		8e-11
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		1e-12
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		8e-07
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		1e-12
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		1e-11
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		1e-12
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		8e-10
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		1e-12
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		8e-10
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		1e-12
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		1e-09
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		1e-12
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		4e-07
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		1e-12
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		5e-10
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		1e-12
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		4e-11
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		1e-12
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		6e-10
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		1e-12
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		1e-07
4gso_A	232	Structure Of Jararacussin-I Length = 232		1e-12
4gso_A	232	Structure Of Jararacussin-I Length = 232		3e-07
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		2e-12
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		7e-11
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		2e-12
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		5e-10
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		2e-12
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		2e-09
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		2e-12
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		2e-09
1dpo_A	223	Structure Of Rat Trypsin Length = 223		2e-12
1dpo_A	223	Structure Of Rat Trypsin Length = 223		2e-09
1pjp_A	226	The 2.2 A Crystal Structure Of Human Chymase In Com		2e-12
1pjp_A	226	The 2.2 A Crystal Structure Of Human Chymase In Com		5e-07
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		2e-12
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		5e-10
2rg3_A	218	Covalent Complex Structure Of Elastase Length = 218		2e-12
2rg3_A	218	Covalent Complex Structure Of Elastase Length = 218		1e-05
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		4e-12
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		4e-05
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		4e-12
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		2e-09
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		6e-12
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		5e-06
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		7e-12
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		5e-11
1klt_A	226	Crystal Structure Of Pmsf-Treated Human Chymase At		8e-12
1klt_A	226	Crystal Structure Of Pmsf-Treated Human Chymase At		6e-07
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		8e-12
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		7e-09
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		9e-12
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		8e-07
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		9e-12
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		4e-06
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		9e-12
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		7e-09
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		1e-11
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		4e-06
3n7o_A	226	X-Ray Structure Of Human Chymase In Complex With Sm		1e-11
3n7o_A	226	X-Ray Structure Of Human Chymase In Complex With Sm		8e-07
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		2e-11
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		3e-06
2fmj_A	222	220-Loop Mutant Of Streptomyces Griseus Trypsin Len		2e-11
2fmj_A	222	220-Loop Mutant Of Streptomyces Griseus Trypsin Len		4e-10
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		2e-11
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		5e-06
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		2e-11
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		8e-06
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		2e-11
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		2e-11
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		2e-11
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		4e-06
1oss_A	223	T190p Streptomyces Griseus Trypsin In Complex With		3e-11
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		3e-11
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		4e-06
1nn6_A	228	Human Pro-Chymase Length = 228		4e-11
1nn6_A	228	Human Pro-Chymase Length = 228		7e-07
4afq_A	226	Human Chymase - Fynomer Complex Length = 226		4e-11
4afq_A	226	Human Chymase - Fynomer Complex Length = 226		7e-07
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		4e-11
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		1e-08
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		4e-11
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		2e-08
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		5e-11
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		2e-06
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		5e-11
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		5e-11
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		1e-06
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		6e-11
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		5e-09
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		9e-11
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		3e-06
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		1e-10
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		1e-08
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		1e-10
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		4e-05
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		2e-10
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		2e-10
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		7e-06
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		2e-10
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		2e-05
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		3e-10
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		4e-05
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		3e-10
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		5e-08
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		3e-10
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		6e-05
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		4e-10
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		3e-06
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		4e-10
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		8e-05
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		5e-10
1fy1_A	225	[r23s,F25e]hbp, A Mutant Of Human Heparin Binding P		8e-10
1fy1_A	225	[r23s,F25e]hbp, A Mutant Of Human Heparin Binding P		1e-04
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		8e-10
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		9e-10
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		7e-06
2asu_B	234	Crystal Structure Of The Beta-Chain Of HgflMSP Leng		9e-10
2rdl_A	226	Hamster Chymase 2 Length = 226		1e-09
2rdl_A	226	Hamster Chymase 2 Length = 226		3e-06
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		2e-09
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		2e-09
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		4e-07
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		2e-09
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		5e-09
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		1e-08
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		1e-08
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		2e-07
1au8_A	224	Human Cathepsin G Length = 224		1e-08
1au8_A	224	Human Cathepsin G Length = 224		2e-06
3beu_A	224	Na+-Dependent Allostery Mediates Coagulation Factor		2e-08
3beu_A	224	Na+-Dependent Allostery Mediates Coagulation Factor		2e-07
1kyn_B	235	Cathepsin-G Length = 235		2e-08
1kyn_B	235	Cathepsin-G Length = 235		2e-06
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		2e-08
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		2e-08
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		2e-08
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		2e-05
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		4e-08
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		9e-08
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		2e-07
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		5e-07
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		4e-04
1aks_A	125	Crystal Structure Of The First Active Autolysate Fo		1e-06
2pks_C	102	Thrombin In Complex With Inhibitor Length = 102		3e-06
2hnt_F	105	Crystallographic Structure Of Human Gamma-Thrombin		3e-06
1bbr_E	109	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-06
3h7o_A	228	Crystal Structure Of Scabies Mite Inactivated Prote		2e-04
2kai_A	80	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		4e-04
3h7t_A	235	Crystal Structure Of Scabies Mite Inactivated Prote		7e-04

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 20/238 (8%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG  I   +   R++ G+++I  +WPWQ+SLQ L  R     H CG  LI P+ V+TAAH
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYL--RDNTWRHTCGGTLITPNHVLTAAH 58
Query: 74  CIHNDIFSLPIPELWTAVLGDWD-RTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKL 130
           CI N +        +   LG  +   E+E   + + V+ I VHE+++++   +DIAL+KL
Sbjct: 59  CISNTL-------TYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKL 111
Query: 131 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV 190
           +      D  ++  CL  ++   +     C  TGWGR+   G + ++L+Q   P+ + + 
Sbjct: 112 AETVELGDT-IQVACLP-SEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYAT 169
Query: 191 C--RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C  RD +G +V+     +C G  DG   AC GDSGGPL C   DG+W + GI SFGSG
Sbjct: 170 CSQRDWWGTTVK--ETMVCAGG-DGVISACNGDSGGPLNCQ-ADGQWDVRGIVSFGSG 223

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL+      D  ++  CL  ++   +     C  TGWGR+   G + ++L+Q   P+
Sbjct: 107 ALIKLAETVELGDT-IQVACLP-SEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPV 164
Query: 345 HNISVC--RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
            + + C  RD +G +V+     +C G  DG   AC GDSGGPL C   DG+W + GI SF
Sbjct: 165 VDYATCSQRDWWGTTVK--ETMVCAGG-DGVISACNGDSGGPLNCQ-ADGQWDVRGIVSF 220
Query: 403 GSG--CAKSGYPDVYTKLSFYLPWIRKQINI 431
           GSG  C     P V+T++S Y+ WI +++ +
Sbjct: 221 GSGLSCNTFKKPTVFTRVSAYIDWINQKLQL 251

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 27/228 (11%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHC--IHNDIFSLP 83
           R++NG+E++ G+WPWQVSLQ    + G   H+CG  LI+ +WVVTAAHC    +D+    
Sbjct: 15  RIVNGEEAVPGSWPWQVSLQ---DKTGF--HFCGGSLINENWVVTAAHCGVTTSDVV--- 66
Query: 84  IPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDKGV 141
                  V G++D+    +   ++ + ++  + ++++   ++DI LLKLS   S   + V
Sbjct: 67  -------VAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAAS-FSQTV 118
Query: 142 RAVCLTDADKRPVNPKQQCVATGWGRVK-PKGDLVSKLRQIRVPLHNISVCRDKYGDSVE 200
            AVCL  A          CV TGWG  +    +   +L+Q  +PL + + C+  +G   +
Sbjct: 119 SAVCLPSASDD-FAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWG--TK 175
Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
           +    +C G   G S +C+GDSGGPL C  K+G W L GI S+GS  C
Sbjct: 176 IKDAMICAGA-SGVS-SCMGDSGGPLVCK-KNGAWTLVGIVSWGSSTC 220

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK-PKGDLVSKLRQIRVPL 344
           LLKLS   S   + V AVCL  A          CV TGWG  +    +   +L+Q  +PL
Sbjct: 105 LLKLSTAAS-FSQTVSAVCLPSASDD-FAAGTTCVTTGWGLTRYTNANTPDRLQQASLPL 162
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + C+  +G   ++    +C G   G S +C+GDSGGPL C  K+G W L GI S+GS
Sbjct: 163 LSNTNCKKYWG--TKIKDAMICAGA-SGVS-SCMGDSGGPLVCK-KNGAWTLVGIVSWGS 217
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
               +  P VY +++  + W+++ +
Sbjct: 218 STCSTSTPGVYARVTALVNWVQQTL 242

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ES  G WPWQVSLQV   +L    H CG  LI   WV+TAAHC       LP+ +
Sbjct: 1   IVGGTESSWGEWPWQVSLQV---KLTAQRHLCGGSLIGHQWVLTAAHCFDG----LPLQD 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
           +W    G  + ++  K      ++ I +H+ +     +HDIAL+KL  P    +      
Sbjct: 54  VWRIYSGILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPIS 113
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
             +  D   +     C  TGWG  K KG++ + L+++ +PL     C+ +Y D  ++   
Sbjct: 114 LPSKGDTSTIYTN--CWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQD-YKITQR 170
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C G  +G   AC GDSGGPL C   +G W L GITS+G G
Sbjct: 171 MVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEG 211

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 104/229 (45%), Gaps = 26/229 (11%)
Query: 205 HLCGGQLDGFSGACIGD---SGGPLQ--CSLKDGRWYLAGITSFGSGYCGVGIRYSHRQP 259
           HLCGG L G            G PLQ    +  G   L+ IT   + +  +     H+  
Sbjct: 27  HLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDITK-DTPFSQIKEIIIHQNY 85
Query: 260 RLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQC 319
           ++  G   I        LI         +  +P S   KG  +   T+           C
Sbjct: 86  KVSEGNHDIA-------LIKLQAPLEYTEFQKPISLPSKGDTSTIYTN-----------C 127
Query: 320 VATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIG 379
             TGWG  K KG++ + L+++ +PL     C+ +Y D  ++    +C G  +G   AC G
Sbjct: 128 WVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQD-YKITQRMVCAGYKEGGKDACKG 186
Query: 380 DSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
           DSGGPL C   +G W L GITS+G GCA+   P VYTK++ Y+ WI ++
Sbjct: 187 DSGGPLVCK-HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S  G WPWQVSLQV   +L    H CG  LI   WV+TAAHC       LP+ +
Sbjct: 1   IVGGTNSSWGEWPWQVSLQV---KLTAQRHLCGGSLIGHQWVLTAAHCFD----GLPLQD 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
           +W    G  + ++  K      ++ I +H+ +     +HDIAL+KL  P +  +      
Sbjct: 54  VWRIYSGILNLSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPIS 113
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
             +  D   +     C  TGWG  K KG++ + L+++ +PL     C+ +Y D  ++   
Sbjct: 114 LPSKGDTSTIYTN--CWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQD-YKITQR 170
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C G  +G   AC GDSGGPL C   +G W L GITS+G G
Sbjct: 171 MVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEG 211

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 104/229 (45%), Gaps = 26/229 (11%)
Query: 205 HLCGGQLDGFSGACIGD---SGGPLQ--CSLKDGRWYLAGITSFGSGYCGVGIRYSHRQP 259
           HLCGG L G            G PLQ    +  G   L+ IT   + +  +     H+  
Sbjct: 27  HLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILNLSDITK-DTPFSQIKEIIIHQNY 85
Query: 260 RLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQC 319
           ++  G   I        LI         +  +P S   KG  +   T+           C
Sbjct: 86  KVSEGNHDIA-------LIKLQAPLNYTEFQKPISLPSKGDTSTIYTN-----------C 127
Query: 320 VATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIG 379
             TGWG  K KG++ + L+++ +PL     C+ +Y D  ++    +C G  +G   AC G
Sbjct: 128 WVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQD-YKITQRMVCAGYKEGGKDACKG 186
Query: 380 DSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
           DSGGPL C   +G W L GITS+G GCA+   P VYTK++ Y+ WI ++
Sbjct: 187 DSGGPLVCK-HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 27/227 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHC--IHNDIFSLPI 84
           ++NG+E++ G+WPWQVSLQ    + G   H+CG  LI+ +WVVTAAHC    +D+     
Sbjct: 1   IVNGEEAVPGSWPWQVSLQ---DKTGF--HFCGGSLINENWVVTAAHCGVTTSDVV---- 51
Query: 85  PELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVR 142
                 V G++D+    +   ++ + ++  + ++++   ++DI LLKLS   S   + V 
Sbjct: 52  ------VAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAAS-FSQTVS 104
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVK-PKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
           AVCL  A          CV TGWG  +    +   +L+Q  +PL + + C+  +G   ++
Sbjct: 105 AVCLPSASDD-FAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWG--TKI 161
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
               +C G   G S +C+GDSGGPL C  K+G W L GI S+GS  C
Sbjct: 162 KDAMICAGA-SGVS-SCMGDSGGPLVCK-KNGAWTLVGIVSWGSSTC 205

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK-PKGDLVSKLRQIRVPL 344
           LLKLS   S   + V AVCL  A          CV TGWG  +    +   +L+Q  +PL
Sbjct: 90  LLKLSTAAS-FSQTVSAVCLPSASDD-FAAGTTCVTTGWGLTRYTNANTPDRLQQASLPL 147
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + C+  +G   ++    +C G   G S +C+GDSGGPL C  K+G W L GI S+GS
Sbjct: 148 LSNTNCKKYWG--TKIKDAMICAGA-SGVS-SCMGDSGGPLVCK-KNGAWTLVGIVSWGS 202
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
               +  P VY +++  + W+++ +
Sbjct: 203 STCSTSTPGVYARVTALVNWVQQTL 227

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 114/225 (50%), Gaps = 13/225 (5%)
Query: 24  QPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLP 83
           +PR++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + + 
Sbjct: 385 KPRIVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHC----FYGVE 437
Query: 84  IPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGV 141
            P++     G  +++E ++      V+ I +H+++      +DIALLKL    +  D   
Sbjct: 438 SPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ- 496
Query: 142 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
           R +CL     R V     C  TGWG  K +  + + L++ ++PL     C+ +Y      
Sbjct: 497 RPICLPSKGDRNV-IYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT 555
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           H   +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 556 H-KMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEG 598

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALLKL    +  D   R +CL     R V     C  TGWG  K +  + + L++ ++PL
Sbjct: 482 ALLKLETTVNYTDSQ-RPICLPSKGDRNV-IYTDCWVTGWGYRKLRDKIQNTLQKAKIPL 539
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C+ +Y      H   +C G  +G   AC GDSGGPL C   +  W+L GITS+G 
Sbjct: 540 VTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGE 597
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQ 428
           GCA+   P VYT +  Y+ WI ++
Sbjct: 598 GCAQRERPGVYTNVVEYVDWILEK 621

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 19/234 (8%)
Query: 20  YSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDI 79
           +S    R++NG++++  +W WQVSLQ  + + G   H CG  LI P WVVTA HCI    
Sbjct: 5   FSRPSSRVVNGEDAVPYSWSWQVSLQ--YEKDGAFHHTCGGSLIAPDWVVTAGHCISTS- 61
Query: 80  FSLPIPELWTAVLGDWDRTEEEKSEVRIPVER--IRVHEEFHNY----HHDIALLKLSRP 133
                   +  VLG++DR+  + SE  IP+    + VH  +++      +DIAL+KLSR 
Sbjct: 62  ------RTYQVVLGEYDRSVLQGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRS 115
Query: 134 TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD 193
               DK   A      D  P   +  C  +GWGR+   G L  KL++  +P+ +   C  
Sbjct: 116 AQLGDKVQLANLPPAGDILP--NEAPCYISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQ 173
Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY 247
                + +    +C G  D  SG C GDSGGPL C   DG W + G+TSF S +
Sbjct: 174 YDWWGITVKKTMVCAGG-DTRSG-CDGDSGGPLNCPAADGSWQVHGVTSFVSAF 225

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KLSR     DK   A      D  P   +  C  +GWGR+   G L  KL++  +P+
Sbjct: 108 ALVKLSRSAQLGDKVQLANLPPAGDILP--NEAPCYISGWGRLYTGGPLPDKLQEALLPV 165
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C       + +    +C G  D  SG C GDSGGPL C   DG W + G+TSF S
Sbjct: 166 VDYEHCSQYDWWGITVKKTMVCAGG-DTRSG-CDGDSGGPLNCPAADGSWQVHGVTSFVS 223
Query: 405 --GCAKSGYPDVYTKLSFYLPWIRKQI 429
             GC     P V+T++S ++ WI + I
Sbjct: 224 AFGCNTIKKPTVFTRVSAFIDWINETI 250

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 125/237 (52%), Gaps = 23/237 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++   +WPWQVSLQ  +   G   H CG  L+  SWV+TAAHCI +         
Sbjct: 1   VVGGEDARPNSWPWQVSLQ--YDSSGQWRHTCGGTLVDQSWVLTAAHCISSS-------R 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH----HDIALLKLSRPTSARDKGVR 142
            +  VLG    +  E   + + V ++ VH+++++      +DIALLKL+ P S  DK ++
Sbjct: 52  TYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDK-IQ 110
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK--YGDSVE 200
             CL  A     N    C  TGWGR++  G     L+Q ++ + + + C     +G +V+
Sbjct: 111 LGCLPAAGTILPN-NYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVK 169
Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
            +   +C G  DG   +C GDSGGPL C   +G+W + GI SFGS    +G  Y H+
Sbjct: 170 TN--MICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGS---SLGCNYYHK 220

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 9/158 (5%)
Query: 276 NLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS 335
           N +++    ALLKL+ P S  DK ++  CL  A     N    C  TGWGR++  G    
Sbjct: 86  NQLSNGNDIALLKLASPVSLTDK-IQLGCLPAAGTILPN-NYVCYVTGWGRLQTNGASPD 143
Query: 336 KLRQIRVPLHNISVCRDK--YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGR 393
            L+Q ++ + + + C     +G +V+ +   +C G  DG   +C GDSGGPL C   +G+
Sbjct: 144 ILQQGQLLVVDYATCSKPGWWGSTVKTN--MICAGG-DGIISSCNGDSGGPLNCQGANGQ 200
Query: 394 WYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRKQI 429
           W + GI SFGS  GC     P V+T++S Y+ WI   I
Sbjct: 201 WQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 111/220 (50%), Gaps = 18/220 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E   G WPWQ SLQ          H CGA LI+ +W+V+AAHC      +   P 
Sbjct: 1   IVGGTEVEEGEWPWQASLQWDGS------HRCGATLINATWLVSAAHCF----TTYKNPA 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHD--IALLKLSRPTSARDKGVRAV 144
            WTA  G       + S+++  + RI VHE++ +  HD  I+L +LS P    +  V  V
Sbjct: 51  RWTASFG----VTIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTN-AVHRV 105
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
           CL DA      P      TG+G +K  G   + LRQ +V L + + C +    +  +   
Sbjct: 106 CLPDASYE-FQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPR 164
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
            LC G L+G + AC GDSGGPL  S     WYLAGI S+G
Sbjct: 165 MLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWG 204

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           +L +LS P    +  V  VCL DA      P      TG+G +K  G   + LRQ +V L
Sbjct: 88  SLAELSSPVPYTN-AVHRVCLPDASYE-FQPGDVMFVTGFGALKNDGYSQNHLRQAQVTL 145
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + C +    +  +    LC G L+G + AC GDSGGPL  S     WYLAGI S+G 
Sbjct: 146 IDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGD 205
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQINI 431
            CAK   P VYT+++    WI  +  I
Sbjct: 206 ECAKPNKPGVYTRVTALRDWITSKTGI 232

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 13/222 (5%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
           +     G  +++E ++      V+ I +H+++      +DIALLKL    +  D   R +
Sbjct: 54  ILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ-RPI 112
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
           CL     R V     C  TGWG  K +  + + L++ ++PL     C+ +Y      H  
Sbjct: 113 CLPSKGDRNV-IYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK- 170
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 171 MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 277 LITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 336
           +  S    ALLKL    +  D   R +CL     R V     C  TGWG  K +  + + 
Sbjct: 87  MAESGYDIALLKLETTVNYTDSQ-RPICLPSKGDRNV-IYTDCWVTGWGYRKLRDKIQNT 144
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C   +  W+L
Sbjct: 145 LQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHL 202
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 31/231 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLS---------RPTS 135
           +     G  +++E ++      V+ I +H+++      +DIALLKL          RP S
Sbjct: 54  ILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPIS 113
Query: 136 ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY 195
              KG R V  TD           C  TGWG  K +  + + L++ ++PL     C+ +Y
Sbjct: 114 LPSKGERNVIYTD-----------CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY 162
Query: 196 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
                 H   +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 163 RGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 277 LITSFLSAALLKLS---------RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRV 327
           +  S    ALLKL          RP S   KG R V  TD           C  TGWG  
Sbjct: 87  MAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTD-----------CWVTGWGYR 135
Query: 328 KPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC 387
           K +  + + L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C
Sbjct: 136 KLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSC 194
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
              +  W+L GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 195 KHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 31/231 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLS---------RPTS 135
           +     G  +++E ++      V+ I +H+++      +DIALLKL          RP S
Sbjct: 54  ILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPIS 113
Query: 136 ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY 195
              KG R V  TD           C  TGWG  K +  + + L++ ++PL     C+ +Y
Sbjct: 114 LPSKGDRNVIYTD-----------CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY 162
Query: 196 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
                 H   +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 163 RGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 277 LITSFLSAALLKLS---------RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRV 327
           +  S    ALLKL          RP S   KG R V  TD           C  TGWG  
Sbjct: 87  MAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTD-----------CWVTGWGYR 135
Query: 328 KPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC 387
           K +  + + L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C
Sbjct: 136 KLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSC 194
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
              +  W+L GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 195 KHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 113/225 (50%), Gaps = 19/225 (8%)
Query: 29  NGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELW 88
           NG++++  +W WQVSLQ  + + G   H CG  LI P WVVTA HCI            +
Sbjct: 1   NGEDAVPYSWSWQVSLQ--YEKDGAFHHTCGGSLIAPDWVVTAGHCISTS-------RTY 51
Query: 89  TAVLGDWDRTEEEKSEVRIPVER--IRVHEEFHNY----HHDIALLKLSRPTSARDKGVR 142
             VLG++DR+  E SE  IP+    + VH  +++      +DIAL+KLSR     DK   
Sbjct: 52  QVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQL 111
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           A      D  P   +  C  +GWGR+   G L  KL+Q  +P  +   C       + + 
Sbjct: 112 ANLPPAGDILP--NEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVK 169
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY 247
              +C G  D  SG C GDSGGPL C   DG W + G+TSF S +
Sbjct: 170 KTMVCAGG-DTRSG-CNGDSGGPLNCPAADGSWQVHGVTSFVSAF 212

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KLSR     DK   A      D  P   +  C  +GWGR+   G L  KL+Q  +P 
Sbjct: 95  ALVKLSRSAQLGDKVQLANLPPAGDILP--NEAPCYISGWGRLYTGGPLPDKLQQALLPT 152
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C       + +    +C G  D  SG C GDSGGPL C   DG W + G+TSF S
Sbjct: 153 VDYEHCSQWDWWGITVKKTMVCAGG-DTRSG-CNGDSGGPLNCPAADGSWQVHGVTSFVS 210
Query: 405 --GCAKSGYPDVYTKLSFYLPWIRKQI 429
             GC     P V+T++S ++ WI + I
Sbjct: 211 AFGCNTIKKPTVFTRVSAFIDWIDETI 237

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 13/222 (5%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
           +     G  ++ E ++      V+ I +H+++      +DIALLKL    +  D   R +
Sbjct: 54  ILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQ-RPI 112
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
           CL     R V     C  TGWG  K +  + + L++ ++PL     C+ +Y      H  
Sbjct: 113 CLPSKGDRNV-IYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK- 170
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 171 MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 277 LITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 336
           +  S    ALLKL    +  D   R +CL     R V     C  TGWG  K +  + + 
Sbjct: 87  MAESGYDIALLKLETTVNYADSQ-RPICLPSKGDRNV-IYTDCWVTGWGYRKLRDKIQNT 144
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C   +  W+L
Sbjct: 145 LQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHL 202
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 15/225 (6%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDI-FSLPIP 85
           ++ G ++  G WPWQVSL  L        H CGA LI P+W+V+AAHC  +D  F    P
Sbjct: 1   VVGGTDADEGEWPWQVSLHALG-----QGHICGASLISPNWLVSAAHCYIDDRGFRYSDP 55
Query: 86  ELWTAVLGDWDRTEEEKSEVRIP-VERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVR 142
             WTA LG  D+++     V+   ++RI  H  F+++   +DIALL+L +P       VR
Sbjct: 56  TQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM-VR 114
Query: 143 AVCLTDADKRPVNPKQQCV-ATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            +CL DA    V P  + +  TGWG  +  G     L++  + + N + C +     +  
Sbjct: 115 PICLPDASH--VFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITP 172
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               +C G L G   +C GDSGGPL     DGR + AG+ S+G G
Sbjct: 173 R--MMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDG 215

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Query: 273 PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCV-ATGWGRVKPKG 331
           P+ N  T     ALL+L +P       VR +CL DA    V P  + +  TGWG  +  G
Sbjct: 87  PFFNDFTFDYDIALLELEKPAEYSSM-VRPICLPDASH--VFPAGKAIWVTGWGHTQYGG 143
Query: 332 DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD 391
                L++  + + N + C +     +      +C G L G   +C GDSGGPL     D
Sbjct: 144 TGALILQKGEIRVINQTTCENLLPQQITPR--MMCVGFLSGGVDSCQGDSGGPLSSVEAD 201
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINI 431
           GR + AG+ S+G GCA+   P VYT+L  +  WI++   +
Sbjct: 202 GRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTGV 241

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 111/231 (48%), Gaps = 31/231 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLS---------RPTS 135
           +     G  ++ E ++      V+ I +H+++      +DIALLKL          RP S
Sbjct: 54  ILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPIS 113
Query: 136 ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY 195
              KG R V  TD           C  TGWG  K +  + + L++ ++PL     C+ +Y
Sbjct: 114 LPSKGDRNVIYTD-----------CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY 162
Query: 196 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
                 H   +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 163 RGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 277 LITSFLSAALLKLS---------RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRV 327
           +  S    ALLKL          RP S   KG R V  TD           C  TGWG  
Sbjct: 87  MAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTD-----------CWVTGWGYR 135
Query: 328 KPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC 387
           K +  + + L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C
Sbjct: 136 KLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSC 194
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
              +  W+L GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 195 KHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 111/231 (48%), Gaps = 31/231 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLS---------RPTS 135
           +     G  +++E  +      V+ I +H+++      +DIALLKL          RP S
Sbjct: 54  ILRVYSGILNQSEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPIS 113
Query: 136 ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY 195
              KG R V  TD           C  TGWG  K +  + + L++ ++PL     C+ +Y
Sbjct: 114 LPSKGDRNVIYTD-----------CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY 162
Query: 196 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
                 H   +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 163 RGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 277 LITSFLSAALLKLS---------RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRV 327
           +  S    ALLKL          RP S   KG R V  TD           C  TGWG  
Sbjct: 87  MAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTD-----------CWVTGWGYR 135
Query: 328 KPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC 387
           K +  + + L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C
Sbjct: 136 KLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSC 194
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
              +  W+L GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 195 KHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
           +     G  ++ E  +      V+ I +H+++      +DIALLKL    +  D   R +
Sbjct: 54  ILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQ-RPI 112
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
           CL     R V     C  TGWG  K +  + + L++ ++PL     C+ +Y      H  
Sbjct: 113 CLPSKGDRNV-IYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK- 170
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 171 MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 277 LITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 336
           +  S    ALLKL    +  D   R +CL     R V     C  TGWG  K +  + + 
Sbjct: 87  MAESGYDIALLKLETTVNYADSQ-RPICLPSKGDRNV-IYTDCWVTGWGYRKLRDKIQNT 144
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C   +  W+L
Sbjct: 145 LQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHL 202
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 112/231 (48%), Gaps = 25/231 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+ R  WPWQVSL+V  P      H+CG  LIHP WV+TAAHC+  D+  L    
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWM---HFCGGSLIHPQWVLTAAHCVGPDVKDL---- 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
              A+            +  +PV RI VH +F+      DIALL+L  P       V  V
Sbjct: 54  --AALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSH-VHTV 110
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKY------G 196
            L  A +    P   C  TGWG V     L     L+Q++VP+    +C  KY      G
Sbjct: 111 TLPPASET-FPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTG 169
Query: 197 DSVEL-HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           D V +     LC G  +    +C GDSGGPL C + +G W  AG+ S+G G
Sbjct: 170 DDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEG 217

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRV 342
           ALL+L  P       V  V L  A +    P   C  TGWG V     L     L+Q++V
Sbjct: 93  ALLELEEPVKVSSH-VHTVTLPPASET-FPPGMPCWVTGWGDVDNDERLPPPFPLKQVKV 150
Query: 343 PLHNISVCRDKY------GDSVEL-HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 395
           P+    +C  KY      GD V +     LC G  +    +C GDSGGPL C + +G W 
Sbjct: 151 PIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV-NGTWL 207
Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            AG+ S+G GCA+   P +YT++++YL WI   +
Sbjct: 208 QAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 110/231 (47%), Gaps = 31/231 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLS---------RPTS 135
           +     G  ++ E  +      V+ I +H+++      +DIALLKL          RP S
Sbjct: 54  ILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPIS 113
Query: 136 ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY 195
              KG R V  TD           C  TGWG  K +  + + L++ ++PL     C+ +Y
Sbjct: 114 LPSKGDRNVIYTD-----------CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY 162
Query: 196 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
                 H   +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 163 RGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 277 LITSFLSAALLKLS---------RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRV 327
           +  S    ALLKL          RP S   KG R V  TD           C  TGWG  
Sbjct: 87  MAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTD-----------CWVTGWGYR 135
Query: 328 KPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC 387
           K +  + + L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C
Sbjct: 136 KLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSC 194
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
              +  W+L GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 195 KHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 110/231 (47%), Gaps = 31/231 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLS---------RPTS 135
           +     G  ++ E  +      V+ I +H+++      +DIALLKL          RP S
Sbjct: 54  ILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPIS 113
Query: 136 ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY 195
              KG R V  TD           C  TGWG  K +  + + L++ ++PL     C+ +Y
Sbjct: 114 LPSKGDRNVIYTD-----------CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY 162
Query: 196 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
                 H   +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 163 RGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 277 LITSFLSAALLKLS---------RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRV 327
           +  S    ALLKL          RP S   KG R V  TD           C  TGWG  
Sbjct: 87  MAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTD-----------CWVTGWGYR 135
Query: 328 KPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC 387
           K +  + + L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C
Sbjct: 136 KLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSC 194
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
              +  W+L GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 195 KHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 112/231 (48%), Gaps = 25/231 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+ R  WPWQVSL+V  P      H+CG  LIHP WV+TAAHC+  D+  L    
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWM---HFCGGSLIHPQWVLTAAHCVGPDVKDL---- 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
              A+            +  +PV RI VH +F+      DIALL+L  P       V  V
Sbjct: 54  --AALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSH-VHTV 110
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKY------G 196
            L  A +    P   C  TGWG V     L     L+Q++VP+    +C  KY      G
Sbjct: 111 TLPPASET-FPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTG 169
Query: 197 DSVEL-HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           D V +     LC G  +    +C GDSGGPL C + +G W  AG+ S+G G
Sbjct: 170 DDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEG 217

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRV 342
           ALL+L  P       V  V L  A +    P   C  TGWG V     L     L+Q++V
Sbjct: 93  ALLELEEPVKVSSH-VHTVTLPPASET-FPPGMPCWVTGWGDVDNDERLPPPFPLKQVKV 150
Query: 343 PLHNISVCRDKY------GDSVEL-HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 395
           P+    +C  KY      GD V +     LC G  +    +C GDSGGPL C + +G W 
Sbjct: 151 PIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV-NGTWL 207
Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            AG+ S+G GCA+   P +YT++++YL WI   +
Sbjct: 208 QAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 112/231 (48%), Gaps = 25/231 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+ R  WPWQVSL+V  P      H+CG  LIHP WV+TAAHC+  D+  L    
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWM---HFCGGSLIHPQWVLTAAHCVGPDVKDL---- 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
              A+            +  +PV RI VH +F+      DIALL+L  P       V  V
Sbjct: 54  --AALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSH-VHTV 110
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKY------G 196
            L  A +    P   C  TGWG V     L     L+Q++VP+    +C  KY      G
Sbjct: 111 TLPPASET-FPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTG 169
Query: 197 DSVEL-HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           D V +     LC G  +    +C GDSGGPL C + +G W  AG+ S+G G
Sbjct: 170 DDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEG 217

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRV 342
           ALL+L  P       V  V L  A +    P   C  TGWG V     L     L+Q++V
Sbjct: 93  ALLELEEPVKVSSH-VHTVTLPPASET-FPPGMPCWVTGWGDVDNDERLPPPFPLKQVKV 150
Query: 343 PLHNISVCRDKY------GDSVEL-HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 395
           P+    +C  KY      GD V +     LC G  +    +C GDSGGPL C + +G W 
Sbjct: 151 PIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV-NGTWL 207
Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            AG+ S+G GCA+   P +YT++++YL WI   +
Sbjct: 208 QAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 14/223 (6%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G +P+Q+S Q     +G   H+CGA + + ++ +TA HC++ D +    P 
Sbjct: 1   IVGGTDATLGEFPYQLSFQ--ETFIGFSFHFCGASIYNENYAITAGHCVYGDDYEN--PS 56
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH---HDIALLKLSRPTSARDKGVRA 143
               V G+ D +  E SE  I V +I +HE F +Y+   +DI+LLKLS   +  D  V  
Sbjct: 57  GLQIVAGELDMSVNEGSEQIITVSKIILHENF-DYNLLDNDISLLKLSGSLTFNDN-VAP 114
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           + L +            + TGWG     G+    L+++ VPL +   CR  YG + E+  
Sbjct: 115 IALPEQGHTATG---DVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYG-ADEILD 170
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             +C G  +G   +C GDSGGPL  S   G  YLAGI S+G G
Sbjct: 171 SMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYG 212

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 276 NLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS 335
           NL+ + +S  LLKLS   +  D  V  + L +            + TGWG     G+   
Sbjct: 91  NLLDNDIS--LLKLSGSLTFNDN-VAPIALPEQGHTATG---DVIVTGWGTTSEGGNTPD 144
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 395
            L+++ VPL +   CR  YG + E+    +C G  +G   +C GDSGGPL  S   G  Y
Sbjct: 145 VLQKVTVPLVSDEDCRADYG-ADEILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTY 202
Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
           LAGI S+G GCA+ GYP VYT++S+++ WI+  
Sbjct: 203 LAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 117/232 (50%), Gaps = 27/232 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+ R  WPWQVSL+V   R     H+CG  LIHP WV+TAAHC+  D+  L    
Sbjct: 1   IVGGQEAPRSKWPWQVSLRV---RDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDL---- 53
Query: 87  LWTAVLGDWDRTEEEKSEVR-IPVERIRVHEEFHNYHH--DIALLKLSRPTSARDKGVRA 143
              A L    R +    + + +PV RI VH +F+      DIALL+L  P +   + V  
Sbjct: 54  ---ATLRVQLREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSR-VHT 109
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKY------ 195
           V L  A +    P   C  TGWG V     L     L+Q++VP+    +C  KY      
Sbjct: 110 VMLPPASET-FPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYT 168
Query: 196 GDSVE-LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           GD V  +    LC G  +    +C GDSGGPL C + +G W  AG+ S+G G
Sbjct: 169 GDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVCKV-NGTWLQAGVVSWGEG 217

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 277 LITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 336
           +I +    ALL+L  P +   + V  V L  A +    P   C  TGWG V     L   
Sbjct: 85  IIQTGADIALLELEEPVNISSR-VHTVMLPPASET-FPPGMPCWVTGWGDVDNDEPLPPP 142
Query: 337 --LRQIRVPLHNISVCRDKY------GDSVEL-HGGHLCGGQLDGFSGACIGDSGGPLQC 387
             L+Q++VP+    +C  KY      GD V +     LC G  +    +C GDSGGPL C
Sbjct: 143 FPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVC 200
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            + +G W  AG+ S+G GCA+   P +YT++++YL WI   +
Sbjct: 201 KV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 117/232 (50%), Gaps = 27/232 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+ R  WPWQVSL+V   R     H+CG  LIHP WV+TAAHC+  D+  L    
Sbjct: 1   IVGGQEAPRSKWPWQVSLRV---RDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDL---- 53
Query: 87  LWTAVLGDWDRTEEEKSEVR-IPVERIRVHEEFHNYHH--DIALLKLSRPTSARDKGVRA 143
              A L    R +    + + +PV RI VH +F+      DIALL+L  P +   + V  
Sbjct: 54  ---ATLRVQLREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSR-VHT 109
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKY------ 195
           V L  A +    P   C  TGWG V     L     L+Q++VP+    +C  KY      
Sbjct: 110 VMLPPASET-FPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYT 168
Query: 196 GDSVE-LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           GD V  +    LC G  +    +C GDSGGPL C + +G W  AG+ S+G G
Sbjct: 169 GDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEG 217

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 277 LITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 336
           +I +    ALL+L  P +   + V  V L  A +    P   C  TGWG V     L   
Sbjct: 85  IIQTGADIALLELEEPVNISSR-VHTVMLPPASET-FPPGMPCWVTGWGDVDNDEPLPPP 142
Query: 337 --LRQIRVPLHNISVCRDKY------GDSVEL-HGGHLCGGQLDGFSGACIGDSGGPLQC 387
             L+Q++VP+    +C  KY      GD V +     LC G  +    +C GDSGGPL C
Sbjct: 143 FPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVC 200
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            + +G W  AG+ S+G GCA+   P +YT++++YL WI   +
Sbjct: 201 KV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC     + +  P+
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCF----YGVESPK 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
           +     G  ++ E ++      V+ I +H+++      +DIALLKL    +  D   R +
Sbjct: 54  ILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQ-RPI 112
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
           CL     R V     C  TGWG    +  + + L++ ++PL     C+ +Y      H  
Sbjct: 113 CLPSKGDRNV-IYTDCWVTGWGYRALRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK- 170
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C G  +G   AC GDSGGPL C   +  W+L GITS+G G
Sbjct: 171 MICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEG 211

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 277 LITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 336
           +  S    ALLKL    +  D   R +CL     R V     C  TGWG    +  + + 
Sbjct: 87  MAESGYDIALLKLETTVNYADSQ-RPICLPSKGDRNV-IYTDCWVTGWGYRALRDKIQNT 144
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           L++ ++PL     C+ +Y      H   +C G  +G   AC GDSGGPL C   +  W+L
Sbjct: 145 LQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDACKGDSGGPLSCKHNE-VWHL 202
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            GITS+G GCA+   P VYT +  Y+ WI ++
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDI-FSLPIP 85
           ++ G ++  G WPWQVSL  L        H CGA LI P+W+V+AAHC  +D  F    P
Sbjct: 1   VVGGTDADEGEWPWQVSLHALG-----QGHICGASLISPNWLVSAAHCYIDDRGFRYSDP 55
Query: 86  ELWTAVLGDWDRTEEEKSEVRIP-VERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVR 142
             WTA LG  D+++     V+   ++RI  H  F+++   +DIALL+L +P       VR
Sbjct: 56  TQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM-VR 114
Query: 143 AVCLTDADKRPVNPKQQCV-ATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            +CL DA    V P  + +  TGWG  +  G     L++  + +   + C +     +  
Sbjct: 115 PICLPDASH--VFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCENLLPQQITP 172
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               +C G L G   +C GDSGGPL     DGR + AG+ S+G G
Sbjct: 173 R--MMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDG 215

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 273 PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCV-ATGWGRVKPKG 331
           P+ N  T     ALL+L +P       VR +CL DA    V P  + +  TGWG  +  G
Sbjct: 87  PFFNDFTFDYDIALLELEKPAEYSSM-VRPICLPDASH--VFPAGKAIWVTGWGHTQYGG 143
Query: 332 DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD 391
                L++  + +   + C +     +      +C G L G   +C GDSGGPL     D
Sbjct: 144 TGALILQKGEIRVIQQTTCENLLPQQITPR--MMCVGFLSGGVDSCQGDSGGPLSSVEAD 201
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINI 431
           GR + AG+ S+G GCA+   P VYT+L  +  WI++   +
Sbjct: 202 GRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTGV 241

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score =  111 bits (277), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 115/236 (48%), Gaps = 20/236 (8%)
Query: 13  DCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           DCG       + P R++ G  +   +WPWQVSL+    R G+  H+CG  LI P WV+TA
Sbjct: 6   DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRT---RFGM--HFCGGTLISPEWVLTA 60
Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLS 131
           AHC+       P P  +  +LG       E     I V R+ +         DIALLKLS
Sbjct: 61  AHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT----RKDIALLKLS 112
Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVPLHNISV 190
            P    DK + A CL   +   V  + +C  TGWG    +G      L++ ++P+    V
Sbjct: 113 SPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGET--QGTFGAGLLKEAQLPVIENKV 168
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C      +  +    LC G L G + +C GDSGGPL C  KD ++ L G+TS+G G
Sbjct: 169 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLG 223

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVP 343
           ALLKLS P    DK + A CL   +   V  + +C  TGWG  +  G      L++ ++P
Sbjct: 107 ALLKLSSPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGETQ--GTFGAGLLKEAQLP 162
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +    VC      +  +    LC G L G + +C GDSGGPL C  KD ++ L G+TS+G
Sbjct: 163 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWG 221
Query: 404 SGCAKSGYPDVYTKLSFYLPWIR 426
            GCA+   P VY ++S ++ WI 
Sbjct: 222 LGCARPNKPGVYVRVSRFVTWIE 244

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 115/236 (48%), Gaps = 20/236 (8%)
Query: 13  DCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           DCG       + P R++ G  +   +WPWQVSL+    R G+  H+CG  LI P WV+TA
Sbjct: 3   DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRT---RFGM--HFCGGTLISPEWVLTA 57
Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLS 131
           AHC+       P P  +  +LG       E     I V R+ +         DIALLKLS
Sbjct: 58  AHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT----RKDIALLKLS 109
Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVPLHNISV 190
            P    DK + A CL   +   V  + +C  TGWG    +G      L++ ++P+    V
Sbjct: 110 SPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGET--QGTFGAGLLKEAQLPVIENKV 165
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C      +  +    LC G L G + +C GDSGGPL C  KD ++ L G+TS+G G
Sbjct: 166 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLG 220

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVP 343
           ALLKLS P    DK + A CL   +   V  + +C  TGWG  +  G      L++ ++P
Sbjct: 104 ALLKLSSPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGETQ--GTFGAGLLKEAQLP 159
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +    VC      +  +    LC G L G + +C GDSGGPL C  KD ++ L G+TS+G
Sbjct: 160 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWG 218
Query: 404 SGCAKSGYPDVYTKLSFYLPWIR 426
            GCA+   P VY ++S ++ WI 
Sbjct: 219 LGCARPNKPGVYVRVSRFVTWIE 241

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDI-FSLPIP 85
           ++ G ++  G WPWQVSL  L        H CGA LI P+W+V+AAHC  +D  F    P
Sbjct: 1   VVGGTDADEGEWPWQVSLHALG-----QGHICGASLISPNWLVSAAHCYIDDRGFRYSDP 55
Query: 86  ELWTAVLGDWDRTEEEKSEVRIP-VERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVR 142
             WTA LG  D+++     V+   ++RI  H  F+++   +DIALL+L +P       VR
Sbjct: 56  TQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM-VR 114
Query: 143 AVCLTDADKRPVNPKQQCV-ATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            + L DA    V P  + +  TGWG  +  G     L++  + + N + C +     +  
Sbjct: 115 PISLPDASH--VFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITP 172
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               +C G L G   +C GDSGGPL     DGR + AG+ S+G G
Sbjct: 173 R--MMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDG 215

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 273 PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCV-ATGWGRVKPKG 331
           P+ N  T     ALL+L +P       VR + L DA    V P  + +  TGWG  +  G
Sbjct: 87  PFFNDFTFDYDIALLELEKPAEYSSM-VRPISLPDASH--VFPAGKAIWVTGWGHTQYGG 143
Query: 332 DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD 391
                L++  + + N + C +     +      +C G L G   +C GDSGGPL     D
Sbjct: 144 TGALILQKGEIRVINQTTCENLLPQQITPR--MMCVGFLSGGVDSCQGDSGGPLSSVEAD 201
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINI 431
           GR + AG+ S+G GCA+   P VYT+L  +  WI++   +
Sbjct: 202 GRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTGV 241

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 15/222 (6%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++   +WPWQ+SLQ L  +     H CG  LI  ++V+TAAHCI N         
Sbjct: 1   VVGGEDARPHSWPWQISLQYL--KNDTWRHTCGGTLIASNFVLTAAHCISN------TRT 52
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVRAV 144
              AV  +    E+E+  + + V+ I VH+ ++     +DIAL+KL+      D  ++  
Sbjct: 53  YRVAVGKNNLEVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDT-IQVA 111
Query: 145 CLTDADKRPVNPKQQ-CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           CL + D   + PK   C  TGWGR+   G +  KL+Q   P+ + + C         +  
Sbjct: 112 CLPEKDS--LLPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKK 169
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
             +C G  DG   AC GDSGGPL C L++G W + GI SFGS
Sbjct: 170 TMVCAGG-DGVISACNGDSGGPLNCQLENGSWEVFGIVSFGS 210

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 7/150 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQ-CVATGWGRVKPKGDLVSKLRQIRVP 343
           AL+KL+      D  ++  CL + D   + PK   C  TGWGR+   G +  KL+Q   P
Sbjct: 94  ALIKLAEHVELSDT-IQVACLPEKDS--LLPKDYPCYVTGWGRLWTNGPIADKLQQGLQP 150
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           + + + C         +    +C G  DG   AC GDSGGPL C L++G W + GI SFG
Sbjct: 151 VVDHATCSRIDWWGFRVKKTMVCAGG-DGVISACNGDSGGPLNCQLENGSWEVFGIVSFG 209
Query: 404 S--GCAKSGYPDVYTKLSFYLPWIRKQINI 431
           S  GC     P VYT++S Y+ WI +++ +
Sbjct: 210 SRRGCNTRKKPVVYTRVSAYIDWINEKMQL 239

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 116/232 (50%), Gaps = 27/232 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+ R  WPWQVSL+V   R     H+CG  LIHP WV+TAAHC+  D+  L    
Sbjct: 1   IVGGQEAPRSKWPWQVSLRV---RDRYWMHFCGGSLIHPQWVLTAAHCLGPDVKDL---- 53
Query: 87  LWTAVLGDWDRTEEEKSEVR-IPVERIRVHEEFHNYHH--DIALLKLSRPTSARDKGVRA 143
              A L    R +    + + +PV RI VH +F+      DIALL+L  P +   + V  
Sbjct: 54  ---ATLRVQLREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSR-VHT 109
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKY------ 195
           V L  A +    P   C  TGWG V     L     L+Q++VP+    +C  KY      
Sbjct: 110 VMLPPASET-FPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYT 168
Query: 196 GDSVE-LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           GD V  +    LC G  +    +C GDSGGPL C + +G W  AG+ S+  G
Sbjct: 169 GDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVCKV-NGTWLQAGVVSWDEG 217

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 277 LITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 336
           +I +    ALL+L  P +   + V  V L  A +    P   C  TGWG V     L   
Sbjct: 85  IIQTGADIALLELEEPVNISSR-VHTVMLPPASET-FPPGMPCWVTGWGDVDNDEPLPPP 142
Query: 337 --LRQIRVPLHNISVCRDKY------GDSVEL-HGGHLCGGQLDGFSGACIGDSGGPLQC 387
             L+Q++VP+    +C  KY      GD V +     LC G  +    +C GDSGGPL C
Sbjct: 143 FPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVC 200
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            + +G W  AG+ S+  GCA+   P +YT++++YL WI   +
Sbjct: 201 KV-NGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 120/251 (47%), Gaps = 23/251 (9%)
Query: 1   MINLCDTVTFAR---DCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPH 56
           + + CD    A    DCG       + P R++ G  +   +WPWQVSL+    R G+  H
Sbjct: 532 LYDYCDVPQCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRT---RFGM--H 586
Query: 57  WCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHE 116
           +CG  LI P WV+TAAHC+       P P  +  +LG       E     I V R+ +  
Sbjct: 587 FCGGTLISPEWVLTAAHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEP 642
Query: 117 EFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-V 175
                  DIALLKLS P    DK + A CL   +   V  + +C  TGWG    +G    
Sbjct: 643 T----RKDIALLKLSSPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGET--QGTFGA 694
Query: 176 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW 235
             L++ ++P+    VC      +  +    LC G L G + +C GDSGGPL C  KD ++
Sbjct: 695 GLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KY 753
Query: 236 YLAGITSFGSG 246
            L G+TS+G G
Sbjct: 754 ILQGVTSWGLG 764

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVP 343
           ALLKLS P    DK + A CL   +   V  + +C  TGWG  +  G      L++ ++P
Sbjct: 648 ALLKLSSPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGETQ--GTFGAGLLKEAQLP 703
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +    VC      +  +    LC G L G + +C GDSGGPL C  KD ++ L G+TS+G
Sbjct: 704 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWG 762
Query: 404 SGCAKSGYPDVYTKLSFYLPWIR 426
            GCA+   P VY ++S ++ WI 
Sbjct: 763 LGCARPNKPGVYVRVSRFVTWIE 785

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 115/236 (48%), Gaps = 20/236 (8%)
Query: 13  DCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           DCG       + P R++ G  +   +WPWQVSL+    R G+  H+CG  LI P WV+TA
Sbjct: 6   DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRT---RFGM--HFCGGTLISPEWVLTA 60
Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLS 131
           AHC+       P P  +  +LG       E     I V R+ +         DIALLKLS
Sbjct: 61  AHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT----RKDIALLKLS 112
Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVPLHNISV 190
            P    DK + A CL   +   V  + +C  TGWG    +G      L++ ++P+    V
Sbjct: 113 SPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGET--QGTFGAGLLKEAQLPVIENKV 168
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C      +  +    LC G L G + +C GD+GGPL C  KD ++ L G+TS+G G
Sbjct: 169 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWGLG 223

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVP 343
           ALLKLS P    DK + A CL   +   V  + +C  TGWG  +  G      L++ ++P
Sbjct: 107 ALLKLSSPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGETQ--GTFGAGLLKEAQLP 162
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +    VC      +  +    LC G L G + +C GD+GGPL C  KD ++ L G+TS+G
Sbjct: 163 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWG 221
Query: 404 SGCAKSGYPDVYTKLSFYLPWIR 426
            GCA+   P VY ++S ++ WI 
Sbjct: 222 LGCARPNKPGVYVRVSRFVTWIE 244

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 115/236 (48%), Gaps = 20/236 (8%)
Query: 13  DCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           DCG       + P R++ G  +   +WPWQVSL+    R G+  H+CG  LI P WV+TA
Sbjct: 5   DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRT---RFGM--HFCGGTLISPEWVLTA 59
Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLS 131
           AHC+       P P  +  +LG       E     I V R+ +         DIALLKLS
Sbjct: 60  AHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT----RKDIALLKLS 111
Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVPLHNISV 190
            P    DK + A CL   +   V  + +C  TGWG    +G      L++ ++P+    V
Sbjct: 112 SPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGET--QGTFGAGLLKEAQLPVIENKV 167
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C      +  +    LC G L G + +C GD+GGPL C  KD ++ L G+TS+G G
Sbjct: 168 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWGLG 222

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVP 343
           ALLKLS P    DK + A CL   +   V  + +C  TGWG  +  G      L++ ++P
Sbjct: 106 ALLKLSSPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGETQ--GTFGAGLLKEAQLP 161
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +    VC      +  +    LC G L G + +C GD+GGPL C  KD ++ L G+TS+G
Sbjct: 162 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWG 220
Query: 404 SGCAKSGYPDVYTKLSFYLPWIR 426
            GCA+   P VY ++S ++ WI 
Sbjct: 221 LGCARPNKPGVYVRVSRFVTWIE 243

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 115/236 (48%), Gaps = 20/236 (8%)
Query: 13  DCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           DCG       + P R++ G  +   +WPWQVSL+    R G+  H+CG  LI P WV+TA
Sbjct: 4   DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRT---RFGM--HFCGGTLISPEWVLTA 58
Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLS 131
           AHC+       P P  +  +LG       E     I V R+ +         DIALLKLS
Sbjct: 59  AHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT----RKDIALLKLS 110
Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVPLHNISV 190
            P    DK + A CL   +   V  + +C  TGWG    +G      L++ ++P+    V
Sbjct: 111 SPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGET--QGTFGAGLLKEAQLPVIENKV 166
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C      +  +    LC G L G + +C GD+GGPL C  KD ++ L G+TS+G G
Sbjct: 167 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWGLG 221

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVP 343
           ALLKLS P    DK + A CL   +   V  + +C  TGWG  +  G      L++ ++P
Sbjct: 105 ALLKLSSPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGETQ--GTFGAGLLKEAQLP 160
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +    VC      +  +    LC G L G + +C GD+GGPL C  KD ++ L G+TS+G
Sbjct: 161 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWG 219
Query: 404 SGCAKSGYPDVYTKLSFYLPWIR 426
            GCA+   P VY ++S ++ WI 
Sbjct: 220 LGCARPNKPGVYVRVSRFVTWIE 242

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 115/236 (48%), Gaps = 20/236 (8%)
Query: 13  DCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           DCG       + P R++ G  +   +WPWQVSL+    R G+  H+CG  LI P WV+TA
Sbjct: 3   DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRT---RFGM--HFCGGTLISPEWVLTA 57
Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLS 131
           AHC+       P P  +  +LG       E     I V R+ +         DIALLKLS
Sbjct: 58  AHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT----RKDIALLKLS 109
Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVPLHNISV 190
            P    DK + A CL   +   V  + +C  TGWG    +G      L++ ++P+    V
Sbjct: 110 SPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGET--QGTFGAGLLKEAQLPVIENKV 165
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C      +  +    LC G L G + +C GD+GGPL C  KD ++ L G+TS+G G
Sbjct: 166 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWGLG 220

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVP 343
           ALLKLS P    DK + A CL   +   V  + +C  TGWG  +  G      L++ ++P
Sbjct: 104 ALLKLSSPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGETQ--GTFGAGLLKEAQLP 159
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +    VC      +  +    LC G L G + +C GD+GGPL C  KD ++ L G+TS+G
Sbjct: 160 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWG 218
Query: 404 SGCAKSGYPDVYTKLSFYLPWIR 426
            GCA+   P VY ++S ++ WI 
Sbjct: 219 LGCARPNKPGVYVRVSRFVTWIE 241

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 114/236 (48%), Gaps = 20/236 (8%)
Query: 13  DCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           DCG       + P R++ G  +   +WPWQVSL+    R G   H+CG  LI P WV+TA
Sbjct: 2   DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRT---RFGQ--HFCGGTLISPEWVLTA 56
Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLS 131
           AHC+       P P  +  +LG       E     I V R+ +         DIALLKLS
Sbjct: 57  AHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT----RKDIALLKLS 108
Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVPLHNISV 190
            P    DK + A CL   +   V  + +C  TGWG    +G      L++ ++P+    V
Sbjct: 109 SPAVITDKVIPA-CLPSPNYM-VADRTECFITGWGET--QGTFGAGLLKEAQLPVIENKV 164
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C      +  +    LC G L G + +C GDSGGPL C  KD ++ L G+TS+G G
Sbjct: 165 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLG 219

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVP 343
           ALLKLS P    DK + A CL   +   V  + +C  TGWG  +  G      L++ ++P
Sbjct: 103 ALLKLSSPAVITDKVIPA-CLPSPNYM-VADRTECFITGWGETQ--GTFGAGLLKEAQLP 158
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +    VC      +  +    LC G L G + +C GDSGGPL C  KD ++ L G+TS+G
Sbjct: 159 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWG 217
Query: 404 SGCAKSGYPDVYTKLSFYLPWIR 426
            GCA+   P VY ++S ++ WI 
Sbjct: 218 LGCARPNKPGVYVRVSRFVTWIE 240

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 119/238 (50%), Gaps = 27/238 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           LI+GK + RG  PWQV L     +L      CGAVLIHPSWV+TAAHC+      L    
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLA-----CGAVLIHPSWVLTAAHCMDESKKLL---- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG++D    EK E+ + ++ + VH  +      +DIALL L++P +   + +  +
Sbjct: 52  ---VRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATL-SQTIVPI 107
Query: 145 CLTD---ADKRPVNPKQQCVATGWG-----RVKPKGDLVSKLRQIRVPLHNISVCRDKYG 196
           CL D   A++      Q+ + TGWG       + K +    L  I++P+   + C +   
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167
Query: 197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRY 254
           + V      LC G L     AC GDSGGP+  S   G W+L G+ S+G G CG+   Y
Sbjct: 168 NMVS--ENMLCAGILGDRQDACEGDSGGPMVASFH-GTWFLVGLVSWGEG-CGLLHNY 221

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTD---ADKRPVNPKQQCVATGWG-----RVKPKGDLVSK 336
           ALL L++P +   + +  +CL D   A++      Q+ + TGWG       + K +    
Sbjct: 90  ALLHLAQPATL-SQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFV 148
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           L  I++P+   + C +   + V      LC G L     AC GDSGGP+  S   G W+L
Sbjct: 149 LNFIKIPVVPHNECSEVMSNMVS--ENMLCAGILGDRQDACEGDSGGPMVASFH-GTWFL 205
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            G+ S+G GC       VYTK+S YL WI   I
Sbjct: 206 VGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 119/238 (50%), Gaps = 27/238 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           LI+GK + RG  PWQV L     +L      CGAVLIHPSWV+TAAHC+      L    
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLA-----CGAVLIHPSWVLTAAHCMDESKKLL---- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG++D    EK E+ + ++ + VH  +      +DIALL L++P +   + +  +
Sbjct: 52  ---VRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATL-SQTIVPI 107
Query: 145 CLTD---ADKRPVNPKQQCVATGWG-----RVKPKGDLVSKLRQIRVPLHNISVCRDKYG 196
           CL D   A++      Q+ + TGWG       + K +    L  I++P+   + C +   
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167
Query: 197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRY 254
           + V      LC G L     AC GDSGGP+  S   G W+L G+ S+G G CG+   Y
Sbjct: 168 NMVS--ENMLCAGILGDRQDACEGDSGGPMVASFH-GTWFLVGLVSWGEG-CGLLHNY 221

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTD---ADKRPVNPKQQCVATGWG-----RVKPKGDLVSK 336
           ALL L++P +   + +  +CL D   A++      Q+ + TGWG       + K +    
Sbjct: 90  ALLHLAQPATL-SQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFV 148
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           L  I++P+   + C +   + V      LC G L     AC GDSGGP+  S   G W+L
Sbjct: 149 LNFIKIPVVPHNECSEVMSNMVS--ENMLCAGILGDRQDACEGDSGGPMVASFH-GTWFL 205
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            G+ S+G GC       VYTK+S YL WI   I
Sbjct: 206 VGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 113/236 (47%), Gaps = 20/236 (8%)
Query: 13  DCGVGIRYSHRQP-RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           DCG       + P  ++ G  +   +WPWQVSL+    R G+  H+CG  LI P WV+TA
Sbjct: 3   DCGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRT---RFGM--HFCGGTLISPEWVLTA 57
Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLS 131
           AHC+       P P  +  +LG       E     I V R+ +         DIALLKLS
Sbjct: 58  AHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT----RKDIALLKLS 109
Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVPLHNISV 190
            P    DK + A CL   +   V  + +C  TGWG    +G      L + ++P+    V
Sbjct: 110 SPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGET--QGTFGAGLLMEAQLPVIENKV 165
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C      +  +    LC G L G + +C GDSGGPL C  KD ++ L G+TS+G G
Sbjct: 166 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLG 220

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVP 343
           ALLKLS P    DK + A CL   +   V  + +C  TGWG  +  G      L + ++P
Sbjct: 104 ALLKLSSPAVITDKVIPA-CLPSPNYV-VADRTECFITGWGETQ--GTFGAGLLMEAQLP 159
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +    VC      +  +    LC G L G + +C GDSGGPL C  KD ++ L G+TS+G
Sbjct: 160 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWG 218
Query: 404 SGCAKSGYPDVYTKLSFYLPWIR 426
            GCA+   P VY ++S ++ WI 
Sbjct: 219 LGCARPNKPGVYVRVSRFVTWIE 241

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 124/272 (45%), Gaps = 26/272 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  +  GAWPW VSLQ+         H CG +L++  WV+TAAHC  N         
Sbjct: 1   VVGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCFKNKKKVTD--- 57
Query: 87  LWTAVLGDWDRTEEEKSEVRIP-----VERIRVHEEFHN--YHHDIALLKLSRPTSARDK 139
            W  + G  +        V+ P     VE I +HE++ +    +DIAL+K++ P      
Sbjct: 58  -WRLIFGANEVVWGSNKPVKPPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPC-GP 115
Query: 140 GVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDS 198
            +   CL      P    Q C  TGWG +K KG   S  L++ RV L ++ +C      +
Sbjct: 116 FIGPGCLPQFKAGPPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYN 175
Query: 199 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGYCGVGIRYSHR 257
             +   ++C G   G    C GDSGGPL C  + +  + + GITS+G G C        +
Sbjct: 176 GRIRSTNVCAGYPRGKIDTCQGDSGGPLMCRDRAENTFVVVGITSWGVG-CA-----RAK 229
Query: 258 QPRLINGKESIRGAWPWQNLITSFLSAALLKL 289
           +P +          WP+ N I S + +  L++
Sbjct: 230 RPGVYT------STWPYLNWIASKIGSNALQM 255

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVP 343
           AL+K++ P       +   CL      P    Q C  TGWG +K KG   S  L++ RV 
Sbjct: 103 ALIKITPPVPC-GPFIGPGCLPQFKAGPPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVA 161
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSF 402
           L ++ +C      +  +   ++C G   G    C GDSGGPL C  + +  + + GITS+
Sbjct: 162 LIDLELCNSTRWYNGRIRSTNVCAGYPRGKIDTCQGDSGGPLMCRDRAENTFVVVGITSW 221
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G GCA++  P VYT    YL WI  +I
Sbjct: 222 GVGCARAKRPGVYTSTWPYLNWIASKI 248

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 17/223 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E+ R +WP Q+SLQ  +       H CG  LI  +WV+TAAHC+  ++       
Sbjct: 1   VVGGTEAQRNSWPSQISLQ--YRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVR 142
            +  V+G+ +  + + +E  + V++I VH  ++       +DIALL+L++  +     V+
Sbjct: 52  TFRVVVGEHNLNQNDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSY-VQ 110
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
              L  A     N    C  TGWG  +  G L   L+Q  +P  + ++C         + 
Sbjct: 111 LGVLPRAGTILAN-NSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVK 169
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
              +C G  DG    C GDSGGPL C L +G++ + G+TSF S
Sbjct: 170 NSMVCAGG-DGVRSGCQGDSGGPLHC-LVNGQYAVHGVTSFVS 210

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 319 CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACI 378
           C  TGWG  +  G L   L+Q  +P  + ++C         +    +C G  DG    C 
Sbjct: 127 CYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGG-DGVRSGCQ 185
Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GDSGGPL C L +G++ + G+TSF S  GC  +  P V+T++S Y+ WI   I
Sbjct: 186 GDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E+ R +WP Q+SLQ  +       H CG  LI  +WV+TAAHC+  ++       
Sbjct: 1   VVGGTEAQRNSWPSQISLQ--YRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVR 142
            +  V+G+ +  +   +E  + V++I VH  ++       +DIALL+L++  +     V+
Sbjct: 52  TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSY-VQ 110
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
              L  A     N    C  TGWG  +  G L   L+Q  +P  + ++C         + 
Sbjct: 111 LGVLPRAGTILAN-NSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVK 169
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
              +C G  DG    C GDSGGPL C L +G++ + G+TSF S
Sbjct: 170 NSMVCAGG-DGVRSGCQGDSGGPLHC-LVNGQYAVHGVTSFVS 210

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 319 CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACI 378
           C  TGWG  +  G L   L+Q  +P  + ++C         +    +C G  DG    C 
Sbjct: 127 CYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGG-DGVRSGCQ 185
Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GDSGGPL C L +G++ + G+TSF S  GC  +  P V+T++S Y+ WI   I
Sbjct: 186 GDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +  G  ++ G WPWQVS+       G+  H CG  L+   WV++AAHC  ++       E
Sbjct: 1   ITGGSSAVAGQWPWQVSITYE----GV--HVCGGSLVSEQWVLSAAHCFPSEHHK----E 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   LG        +      ++ I  H  +       DIALL+LSRP +   + +R +
Sbjct: 51  AYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPIT-FSRYIRPI 109
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRVPLHNISVCRDKYGDSVELH 202
            L  A     N    C  TGWG V P   L++   L+Q+ VPL +   C   Y    +  
Sbjct: 110 SLPAAQASFPN-GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPE 168
Query: 203 GGHL------CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR 253
             H       C G ++G   AC GDSGGPL C + +G WYL GI S+G   CG   R
Sbjct: 169 EPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLWYLTGIVSWGDA-CGARNR 223

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRV 342
           ALL+LSRP +   + +R + L  A     N    C  TGWG V P   L++   L+Q+ V
Sbjct: 92  ALLQLSRPIT-FSRYIRPISLPAAQASFPN-GLHCTVTGWGHVAPSVSLLTPKPLQQLEV 149
Query: 343 PLHNISVCRDKYGDSVELHGGHL------CGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           PL +   C   Y    +    H       C G ++G   AC GDSGGPL C + +G WYL
Sbjct: 150 PLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLWYL 208
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            GI S+G  C     P VYT  S Y  WI+ ++ 
Sbjct: 209 TGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +  G  ++ G WPWQVS+       G+  H CG  L+   WV++AAHC  ++       E
Sbjct: 1   ITGGSSAVAGQWPWQVSITYE----GV--HVCGGSLVSEQWVLSAAHCFPSEHHK----E 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   LG        +      ++ I  H  +       DIALL+LSRP +   + +R +
Sbjct: 51  AYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPIT-FSRYIRPI 109
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRVPLHNISVCRDKYGDSVELH 202
            L  A     N    C  TGWG V P   L++   L+Q+ VPL +   C   Y    +  
Sbjct: 110 SLPAAQASFPN-GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPE 168
Query: 203 GGHL------CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR 253
             H       C G ++G   AC GDSGGPL C + +G WYL GI S+G   CG   R
Sbjct: 169 EPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLWYLTGIVSWGDA-CGARNR 223

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRV 342
           ALL+LSRP +   + +R + L  A     N    C  TGWG V P   L++   L+Q+ V
Sbjct: 92  ALLQLSRPIT-FSRYIRPISLPAAQASFPN-GLHCTVTGWGHVAPSVSLLTPKPLQQLEV 149
Query: 343 PLHNISVCRDKYGDSVELHGGHL------CGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           PL +   C   Y    +    H       C G ++G   AC GDSGGPL C + +G WYL
Sbjct: 150 PLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLWYL 208
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            GI S+G  C     P VYT  S Y  WI+ ++ 
Sbjct: 209 TGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +  G  ++ G WPWQVS+       G+  H CG  L+   WV++AAHC  ++       E
Sbjct: 1   ITGGSSAVAGQWPWQVSIT----YEGV--HVCGGSLVSEQWVLSAAHCFPSEHHK----E 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   LG        +      ++ I  H  +       DIALL+LSRP +   + +R +
Sbjct: 51  AYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPIT-FSRYIRPI 109
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRVPLHNISVCRDKYGDSVELH 202
            L  A+    N    C  TGWG V P   L++   L+Q+ VPL +   C   Y    +  
Sbjct: 110 SLPAANASFPN-GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPE 168
Query: 203 GGHL------CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV 250
             H       C G ++G   AC GDSGGPL C + +G WYL GI S+G   CG 
Sbjct: 169 EPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLWYLTGIVSWGDA-CGA 220

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK--LRQIRV 342
           ALL+LSRP +   + +R + L  A+    N    C  TGWG V P   L++   L+Q+ V
Sbjct: 92  ALLQLSRPIT-FSRYIRPISLPAANASFPN-GLHCTVTGWGHVAPSVSLLTPKPLQQLEV 149
Query: 343 PLHNISVCRDKYGDSVELHGGHL------CGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           PL +   C   Y    +    H       C G ++G   AC GDSGGPL C + +G WYL
Sbjct: 150 PLISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLWYL 208
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            GI S+G  C     P VYT  S Y  WI+ ++ 
Sbjct: 209 TGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 23/233 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+ +  G +PWQV L       G +  +CG  +I+  WVVTAAHCI   +       
Sbjct: 1   IVGGENAKPGQFPWQVLLN------GKIDAFCGGSIINEKWVVTAAHCIEPGV------- 47
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVR 142
             T V G+++  E E +E R  V R   H  +    + Y HDIALL+L  P +  +  V 
Sbjct: 48  KITVVAGEYNTEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTL-NSYVT 106
Query: 143 AVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            +C+ D +   +  K      +GWGRV  +G   + L+ ++VPL + + C         +
Sbjct: 107 PICIADKEYTNIFLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRS--TKFTI 164
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRY 254
           +    C G  +G   +C GDSGGP   +  +G  +L GI S+G   C V  +Y
Sbjct: 165 YSNMFCAGFHEGGKDSCQGDSGGP-HVTEVEGTSFLTGIISWGEE-CAVKGKY 215

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
           ALL+L  P +  +  V  +C+ D +   +  K      +GWGRV  +G   + L+ ++VP
Sbjct: 91  ALLELDEPLTL-NSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFNRGRSATILQYLKVP 149
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L + + C         ++    C G  +G   +C GDSGGP   +  +G  +L GI S+G
Sbjct: 150 LVDRATCLRS--TKFTIYSNMFCAGFHEGGKDSCQGDSGGP-HVTEVEGTSFLTGIISWG 206
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQINIA 432
             CA  G   +YTK+S Y+ WI+++  + 
Sbjct: 207 EECAVKGKYGIYTKVSRYVNWIKEKTKLT 235

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 119/248 (47%), Gaps = 20/248 (8%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG+  +YS  Q R+  G  +   + PWQ ++   H R       CG +LI   W+++AAH
Sbjct: 2   CGLR-QYSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAH 60
Query: 74  CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLS 131
           C          P   T +LG   R    + E +  VE+  VH+EF +  Y +DIALL+L 
Sbjct: 61  CFQERF----PPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLK 116
Query: 132 RPTS---ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHN 187
             +S        VR VCL  AD + +    +C  +G+G+ +      S +L++  V L+ 
Sbjct: 117 SDSSRCAQESSVVRTVCLPPADLQ-LPDWTECELSGYGKHEALSPFYSERLKEAHVRLYP 175
Query: 188 ISVCRDKYGDSVELHGGHLC------GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 241
            S C  ++  +  +    LC      GG       AC GDSGGPL C L DGR  L GI 
Sbjct: 176 SSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVC-LNDGRMTLVGII 234
Query: 242 SFGSGYCG 249
           S+G G CG
Sbjct: 235 SWGLG-CG 241

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 285 ALLKLSRPTS---ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQI 340
           ALL+L   +S        VR VCL  AD + +    +C  +G+G+ +      S +L++ 
Sbjct: 111 ALLQLKSDSSRCAQESSVVRTVCLPPADLQ-LPDWTECELSGYGKHEALSPFYSERLKEA 169
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLC------GGQLDGFSGACIGDSGGPLQCSLKDGRW 394
            V L+  S C  ++  +  +    LC      GG       AC GDSGGPL C L DGR 
Sbjct: 170 HVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVC-LNDGRM 228
Query: 395 YLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            L GI S+G GC +   P VYTK++ YL WIR  +
Sbjct: 229 TLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 263

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 17/223 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E+ R +WP Q+SLQ  +       H CG  LI  +WV+TAAHC+  ++       
Sbjct: 1   VVGGTEAQRNSWPSQISLQ--YRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVR 142
            +  V+G+ +  +   +E  + V++I VH  ++       +DIALL+L++  +  +  V+
Sbjct: 52  TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTL-NSYVQ 110
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
              L  A     N    C  TGWG  +  G L   L+Q  +P  + ++C         + 
Sbjct: 111 LGVLPRAGTILRN-NSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVK 169
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
              +C G  DG    C GDSGGPL C L +G++ + G+TSF S
Sbjct: 170 NSMVCAGG-DGVRSGCQGDSGGPLHC-LVNGQYAVHGVTSFVS 210

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 319 CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACI 378
           C  TGWG  +  G L   L+Q  +P  + ++C         +    +C G  DG    C 
Sbjct: 127 CYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGG-DGVRSGCQ 185
Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GDSGGPL C L +G++ + G+TSF S  GC  +  P V+T++S Y+ WI   I
Sbjct: 186 GDSGGPLHC-LVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 16/221 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  GAWPW V L      L      CGA L+   W+V+AAHC++        P 
Sbjct: 1   IVGGSDAKEGAWPWVVGLYYDDRLL------CGASLVSSDWLVSAAHCVYGRNLE---PS 51
Query: 87  LWTAVLG---DWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRA 143
            WTA+LG     + T  +     I    I  H       +DIA++ L    +  D  ++ 
Sbjct: 52  KWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDY-IQP 110
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           + L + + +   P + C   GWG V  +G     L++  VPL +   C+ +  +   +  
Sbjct: 111 ISLPE-ENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPE-YNITE 168
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
             +C G  +G   +C GDSGGPL C  ++ RW+LAG+TSFG
Sbjct: 169 NMICAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFG 208

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 315 PKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 374
           P + C   GWG V  +G     L++  VPL +   C+ +  +   +    +C G  +G  
Sbjct: 122 PGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPE-YNITENMICAGYEEGGI 180
Query: 375 GACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
            +C GDSGGPL C  ++ RW+LAG+TSFG  CA    P VY ++S +  WI+ 
Sbjct: 181 DSCQGDSGGPLMCQ-ENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQS 232

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 18/222 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G +S  GAWPW V+L     ++      CGA L+   W+V+AAHC++        P 
Sbjct: 1   IVGGSDSREGAWPWVVALYFDDQQV------CGASLVSRDWLVSAAHCVYGRNME---PS 51
Query: 87  LWTAVLG--DWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVR 142
            W AVLG          + E R+ +++I ++  ++    ++DIA++ L    +  D  ++
Sbjct: 52  KWKAVLGLHMASNLTSPQIETRL-IDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDY-IQ 109
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
            +CL + + +   P + C   GWG +  +G     L++  VPL +   C+ +  +   + 
Sbjct: 110 PICLPE-ENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPE-YNIT 167
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
              +C G   G   +C GDSGGPL C  ++ RW LAG+TSFG
Sbjct: 168 ENMVCAGYEAGGVDSCQGDSGGPLMCQ-ENNRWLLAGVTSFG 208

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           A++ L    +  D  ++ +CL + + +   P + C   GWG +  +G     L++  VPL
Sbjct: 94  AMMHLEMKVNYTDY-IQPICLPE-ENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPL 151
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C+ +  +   +    +C G   G   +C GDSGGPL C  ++ RW LAG+TSFG 
Sbjct: 152 LSNEKCQQQMPE-YNITENMVCAGYEAGGVDSCQGDSGGPLMCQ-ENNRWLLAGVTSFGY 209
Query: 405 GCAKSGYPDVYTKLSFYLPWIRK 427
            CA    P VY ++  +  WI+ 
Sbjct: 210 QCALPNRPGVYARVPRFTEWIQS 232

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G++   G  PWQ +L V     G    +CG  +++  +V+TAAHC+H         +
Sbjct: 1   IVGGRDCAEGECPWQ-ALLVNEENEG----FCGGTILNEFYVLTAAHCLHQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +T  +GD +  +EE +E+   VE    H  F    Y  DIA+L+L  P   R + V   
Sbjct: 49  RFTVRVGDRNTEQEEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFR-RNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG L S L+ + VP  + S C  K   S  + 
Sbjct: 108 CLPEKDWAEATLMTQKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTC--KLSSSFTIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 PNMFCAGYDTQPEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           A+L+L  P   R + V   CL + D  +  +  ++  + +G+GR   KG L S L+ + V
Sbjct: 90  AVLRLKTPIRFR-RNVAPACLPEKDWAEATLMTQKTGIVSGFGRTHEKGRLSSTLKMLEV 148
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P  + S C  K   S  +     C G       AC GDSGGP     KD  +++ GI S+
Sbjct: 149 PYVDRSTC--KLSSSFTITPNMFCAGYDTQPEDACQGDSGGPHVTRFKD-TYFVTGIVSW 205
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRK 427
           G GCA+ G   VYTK+S +L WI K
Sbjct: 206 GEGCARKGKFGVYTKVSNFLKWIDK 230

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 22/224 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++  G +PWQV L       G +  +CG  +++  W+VTAAHC+   +       
Sbjct: 1   VVGGEDAKPGQFPWQVVLN------GKVDAFCGGSIVNEKWIVTAAHCVETGV------- 47
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVR 142
             T V G+ +  E E +E +  V RI  H  F    + Y+HDIALL+L  P    +  V 
Sbjct: 48  KITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPL-VLNSYVT 106
Query: 143 AVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            +C+ D +   +  K      +GWGRV  KG     L+ +RVPL + + C         +
Sbjct: 107 PICIADKEYTNIFLKFGSGYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRS--TKFTI 164
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
                C G  +G   +C GDSGGP   +  +G  +L GI S+G 
Sbjct: 165 TNNMFCAGFHEGGRDSCQGDSGGP-HVTEVEGTSFLTGIISWGE 207

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
           ALL+L  P    +  V  +C+ D +   +  K      +GWGRV  KG     L+ +RVP
Sbjct: 91  ALLELDEPL-VLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRAALVLQYLRVP 149
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L + + C         +     C G  +G   +C GDSGGP   +  +G  +L GI S+G
Sbjct: 150 LVDRATCLRS--TKFTITNNMFCAGFHEGGRDSCQGDSGGP-HVTEVEGTSFLTGIISWG 206
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQINIA 432
             CA  G   +YTK+S Y+ WI+++  + 
Sbjct: 207 EECAMKGKYGIYTKVSRYVNWIKEKTKLT 235

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 22/223 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+ +   +WPWQ+SLQ  +       H CG  LI   WV+TAAHC+ +         
Sbjct: 1   VVGGRVAQPNSWPWQISLQ--YKSGSSYYHTCGGSLIRQGWVMTAAHCVDS-------AR 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH----HDIALLKLSRPTSARDKGVR 142
            W  VLG+ +    E  E  + V  + +H  +++      +DIALL+L+   S  +  V+
Sbjct: 52  TWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQAS-LNSAVQ 110
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK--YGDSVE 200
              L  +++   N    C  TGWG+    G L   L+Q  +P  + + C     +G +V+
Sbjct: 111 LAALPPSNQILPN-NNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVK 169
Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 243
                +C G   G +  C GDSGGPL C + +G +Y+ G+TSF
Sbjct: 170 TT--MVCAG--GGANSGCNGDSGGPLNCQV-NGSYYVHGVTSF 207

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L+   S  +  V+   L  +++   N    C  TGWG+    G L   L+Q  +P 
Sbjct: 95  ALLRLNTQAS-LNSAVQLAALPPSNQILPN-NNPCYITGWGKTSTGGPLSDSLKQAWLPS 152
Query: 345 HNISVCRDK--YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
            + + C     +G +V+     +C G   G +  C GDSGGPL C + +G +Y+ G+TSF
Sbjct: 153 VDHATCSSSGWWGSTVKTT--MVCAG--GGANSGCNGDSGGPLNCQV-NGSYYVHGVTSF 207
Query: 403 --GSGCAKSGYPDVYTKLSFYLPWIR 426
              SGC  S  P V+T++S Y+ W+ 
Sbjct: 208 VSSSGCNASKKPTVFTRVSAYISWMN 233

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 22/224 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++  G +PWQV L       G +  +CG  +++  W+VTAAHC+   +       
Sbjct: 1   VVGGEDAKPGQFPWQVVLN------GKVDAFCGGSIVNEKWIVTAAHCVETGV------- 47
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVR 142
             T V G+ +  E E +E +  V RI  H  F    + Y+HDIALL+L  P    +  V 
Sbjct: 48  KITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPL-VLNSYVT 106
Query: 143 AVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            +C+ D +   +  K      +GWGRV  KG     L+ +RVPL + + C         +
Sbjct: 107 PICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTI 164
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
                C G  +G   +C GDSGGP   +  +G  +L GI S+G 
Sbjct: 165 TNNMFCAGFHEGGRDSCQGDSGGP-HVTEVEGTSFLTGIISWGE 207

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
           ALL+L  P    +  V  +C+ D +   +  K      +GWGRV  KG     L+ +RVP
Sbjct: 91  ALLELDEPL-VLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVP 149
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L + + C         +     C G  +G   +C GDSGGP   +  +G  +L GI S+G
Sbjct: 150 LVDRATCLRS--TKFTITNNMFCAGFHEGGRDSCQGDSGGP-HVTEVEGTSFLTGIISWG 206
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQINIA 432
             CA  G   +YTK+S Y+ WI+++  + 
Sbjct: 207 EECAMKGKYGIYTKVSRYVNWIKEKTKLT 235

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++  G +PWQV L       G +  +CG  +++  W+VTAAHC+   +       
Sbjct: 1   VVGGEDAKPGQFPWQVVLN------GKVDAFCGGSIVNEKWIVTAAHCVETGV------- 47
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVR 142
             T V G+ +  E E +E +  V RI  H  +    + Y+HDIALL+L  P    +  V 
Sbjct: 48  KITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPL-VLNSYVT 106
Query: 143 AVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            +C+ D +   +  K      +GWGRV  KG     L+ +RVPL + + C         +
Sbjct: 107 PICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTI 164
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
           +    C G  +G   +C GDSGGP   +  +G  +L GI S+G 
Sbjct: 165 YNNMFCAGFHEGGRDSCQGDSGGP-HVTEVEGTSFLTGIISWGE 207

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
           ALL+L  P    +  V  +C+ D +   +  K      +GWGRV  KG     L+ +RVP
Sbjct: 91  ALLELDEPL-VLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVP 149
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L + + C         ++    C G  +G   +C GDSGGP   +  +G  +L GI S+G
Sbjct: 150 LVDRATCLRS--TKFTIYNNMFCAGFHEGGRDSCQGDSGGP-HVTEVEGTSFLTGIISWG 206
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQINIA 432
             CA  G   +YTK+S Y+ WI+++  + 
Sbjct: 207 EECAMKGKYGIYTKVSRYVNWIKEKTKLT 235

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 122/267 (45%), Gaps = 41/267 (15%)
Query: 1   MINLCD------TVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLM 54
           +I++CD           +DCG   R      R++ G+++  G WPWQVSL+         
Sbjct: 89  VISVCDCPRGRFLAAICQDCG---RRKLPVDRIVGGRDTSLGRWPWQVSLRYDG------ 139
Query: 55  PHWCGAVLIHPSWVVTAAHCI--HNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERI 112
            H CG  L+   WV+TAAHC    N + S      W    G     +     +++ V+ +
Sbjct: 140 AHLCGGSLLSGDWVLTAAHCFPERNRVLS-----RWRVFAG--AVAQASPHGLQLGVQAV 192
Query: 113 RVHEEFHNYH--------HDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATG 164
             H  +  +         +DIAL+ LS P    +  ++ VCL  A +  V+ K  C  TG
Sbjct: 193 VYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEY-IQPVCLPAAGQALVDGK-ICTVTG 250
Query: 165 WGRVKPKGDLVSKLRQIRVPLHNISVCR--DKYGDSVELHGGHLCGGQLDGFSGACIGDS 222
           WG  +  G     L++ RVP+ +  VC   D YG+ ++      C G  +G   AC GDS
Sbjct: 251 WGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPK--MFCAGYPEGGIDACQGDS 308
Query: 223 GGPLQCS---LKDGRWYLAGITSFGSG 246
           GGP  C     +  RW L GI S+G+G
Sbjct: 309 GGPFVCEDSISRTPRWRLCGIVSWGTG 335

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+ LS P    +  ++ VCL  A +  V+ K  C  TGWG  +  G     L++ RVP+
Sbjct: 214 ALVHLSSPLPLTEY-IQPVCLPAAGQALVDGKI-CTVTGWGNTQYYGQQAGVLQEARVPI 271
Query: 345 HNISVCR--DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCS---LKDGRWYLAGI 399
            +  VC   D YG+ ++      C G  +G   AC GDSGGP  C     +  RW L GI
Sbjct: 272 ISNDVCNGADFYGNQIKPK--MFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGI 329
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G+GCA +  P VYTK+S +  WI + I 
Sbjct: 330 VSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 122/267 (45%), Gaps = 41/267 (15%)
Query: 1   MINLCDT------VTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLM 54
           +I++CD           +DCG   R      R++ G+++  G WPWQVSL+         
Sbjct: 89  VISVCDCPRGRFLAAICQDCG---RRKLPVDRIVGGRDTSLGRWPWQVSLRYDG------ 139
Query: 55  PHWCGAVLIHPSWVVTAAHCI--HNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERI 112
            H CG  L+   WV+TAAHC    N + S      W    G     +     +++ V+ +
Sbjct: 140 AHLCGGSLLSGDWVLTAAHCFPERNRVLS-----RWRVFAG--AVAQASPHGLQLGVQAV 192
Query: 113 RVHEEFHNYH--------HDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATG 164
             H  +  +         +DIAL+ LS P    +  ++ VCL  A +  V+ K  C  TG
Sbjct: 193 VYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEY-IQPVCLPAAGQALVDGK-ICTVTG 250
Query: 165 WGRVKPKGDLVSKLRQIRVPLHNISVCR--DKYGDSVELHGGHLCGGQLDGFSGACIGDS 222
           WG  +  G     L++ RVP+ +  VC   D YG+ ++      C G  +G   AC GDS
Sbjct: 251 WGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPK--MFCAGYPEGGIDACQGDS 308
Query: 223 GGPLQCS---LKDGRWYLAGITSFGSG 246
           GGP  C     +  RW L GI S+G+G
Sbjct: 309 GGPFVCEDSISRTPRWRLCGIVSWGTG 335

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+ LS P    +  ++ VCL  A +  V+ K  C  TGWG  +  G     L++ RVP+
Sbjct: 214 ALVHLSSPLPLTEY-IQPVCLPAAGQALVDGKI-CTVTGWGNTQYYGQQAGVLQEARVPI 271
Query: 345 HNISVCR--DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCS---LKDGRWYLAGI 399
            +  VC   D YG+ ++      C G  +G   AC GDSGGP  C     +  RW L GI
Sbjct: 272 ISNDVCNGADFYGNQIKPK--MFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGI 329
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G+GCA +  P VYTK+S +  WI + I 
Sbjct: 330 VSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHC--IHNDIFSLPI 84
           +I G+++  GAWPW VSLQ+         H CG  L++  W++TAAHC  I   +     
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTD--- 57
Query: 85  PELWTAVLGDWDRTEEEKSEVRIP-----VERIRVHEEF--HNYHHDIALLKLSRPTSAR 137
              W  + G  +        V+ P     VE+I +HE++   +  +DIAL+K++ P +  
Sbjct: 58  ---WRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTC- 113
Query: 138 DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYG 196
              +   CL      P    Q C   GWG ++      S  L++ RV L ++ +C     
Sbjct: 114 GHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRW 173
Query: 197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCS-LKDGRWYLAGITSFGSG 246
            +  +   ++C G  +G    C GDSGGPL C    +  + + GITS+G G
Sbjct: 174 YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVG 224

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
           AL+K++ P +     +   CL      P    Q C   GWG ++      S  L++ RV 
Sbjct: 103 ALMKITPPVTC-GHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVD 161
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCS-LKDGRWYLAGITSF 402
           L ++ +C      +  +   ++C G  +G    C GDSGGPL C    +  + + GITS+
Sbjct: 162 LIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSW 221
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G GCA++  P VYT    YL WI  +I
Sbjct: 222 GVGCARAKRPGVYTSTWSYLNWIASKI 248

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++  G +PWQV L       G +  +CG  +++  W+VTAAHC+   +       
Sbjct: 1   VVGGEDAKPGQFPWQVVLN------GKVDAFCGGSIVNEKWIVTAAHCVETGV------- 47
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVR 142
             T V G+ +  E E +E +  V RI  H  +    + Y+HDIALL+L  P    +  V 
Sbjct: 48  KITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPL-VLNSYVT 106
Query: 143 AVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            +C+ D +   +  K      +GWGRV  KG     L+ +RVPL + + C         +
Sbjct: 107 PICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTI 164
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
           +    C G  +G   +C GD+GGP   +  +G  +L GI S+G 
Sbjct: 165 YNNMFCAGFHEGGRDSCQGDAGGP-HVTEVEGTSFLTGIISWGE 207

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
           ALL+L  P    +  V  +C+ D +   +  K      +GWGRV  KG     L+ +RVP
Sbjct: 91  ALLELDEPL-VLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVP 149
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L + + C         ++    C G  +G   +C GD+GGP   +  +G  +L GI S+G
Sbjct: 150 LVDRATCLRS--TKFTIYNNMFCAGFHEGGRDSCQGDAGGP-HVTEVEGTSFLTGIISWG 206
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQINIA 432
             CA  G   +YTK+S Y+ WI+++  + 
Sbjct: 207 EECAMKGKYGIYTKVSRYVNWIKEKTKLT 235

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 22/224 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++  G +PWQV L       G +  +CG  +++  W+VTAAHC+   +       
Sbjct: 1   VVGGEDAKPGQFPWQVVLN------GKVDAFCGGSIVNEKWIVTAAHCVETGV------- 47
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVR 142
             T V G+ +  E E +E +  V RI  H  +    + Y+HDIALL+L  P    +  V 
Sbjct: 48  KITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPL-VLNSYVT 106
Query: 143 AVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            +C+ D +   +  K      +GWGRV  KG     L+ +RVPL + + C         +
Sbjct: 107 PICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS--TKFTI 164
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
                C G  +G   +C GDSGGP   +  +G  +L GI S+G 
Sbjct: 165 TNNMFCAGFHEGGRDSCQGDSGGP-HVTEVEGTSFLTGIISWGE 207

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
           ALL+L  P    +  V  +C+ D +   +  K      +GWGRV  KG     L+ +RVP
Sbjct: 91  ALLELDEPL-VLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVP 149
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L + + C         +     C G  +G   +C GDSGGP   +  +G  +L GI S+G
Sbjct: 150 LVDRATCLRS--TKFTITNNMFCAGFHEGGRDSCQGDSGGP-HVTEVEGTSFLTGIISWG 206
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQINIA 432
             CA  G   +YTK+S Y+ WI+++  + 
Sbjct: 207 EECAMKGKYGIYTKVSRYVNWIKEKTKLT 235

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 110/232 (47%), Gaps = 19/232 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ GK+  +G  PWQV L V   +L      CG  LI+  WVV+AAHC       +    
Sbjct: 1   IVGGKDCPKGECPWQVLLLVNGAQL------CGGTLINTIWVVSAAHCFDK----IKNWR 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
              AVLG+ D +E +  E    V ++ +   +     +HDIALL+L +P    D  V  +
Sbjct: 51  NLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDH-VVPL 109
Query: 145 CLTD--ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD---KYGDSV 199
           CL +    +R +   +  + +GWG++  +G     L+ + VP      C     K GDS 
Sbjct: 110 CLPERTFSERTLAFVRFSLVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSP 169
Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
            +     C G  DG   +C GDSGGP     + G WYL GI S+G G   VG
Sbjct: 170 NITEYMFCAGYSDGSKDSCKGDSGGPHATHYR-GTWYLTGIVSWGQGCATVG 220

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTD--ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           ALL+L +P    D  V  +CL +    +R +   +  + +GWG++  +G     L+ + V
Sbjct: 92  ALLRLHQPVVLTDH-VVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALVLQVLNV 150
Query: 343 PLHNISVCRD---KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           P      C     K GDS  +     C G  DG   +C GDSGGP     + G WYL GI
Sbjct: 151 PRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR-GTWYLTGI 209
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
            S+G GCA  G+  VYT++S Y+ W++K
Sbjct: 210 VSWGQGCATVGHFGVYTRVSQYIEWLQK 237

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 107/223 (47%), Gaps = 19/223 (8%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           PWQ ++   H R       CG +LI   W+++AAHC          P   T +LG   R 
Sbjct: 13  PWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERF----PPHHLTVILGRTYRV 68
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTS---ARDKGVRAVCLTDADKRP 153
              + E +  VE+  VH+EF +  Y +DIALL+L   +S        VR VCL  AD + 
Sbjct: 69  VPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQ- 127
Query: 154 VNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDSVELHGGHLC----- 207
           +    +C  +G+G+ +      S +L++  V L+  S C  ++  +  +    LC     
Sbjct: 128 LPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTR 187
Query: 208 -GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            GG       AC GDSGGPL C L DGR  L GI S+G G CG
Sbjct: 188 SGGPQANLHDACQGDSGGPLVC-LNDGRMTLVGIISWGLG-CG 228

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 285 ALLKLSRPTS---ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQI 340
           ALL+L   +S        VR VCL  AD + +    +C  +G+G+ +      S +L++ 
Sbjct: 98  ALLQLKSDSSRCAQESSVVRTVCLPPADLQ-LPDWTECELSGYGKHEALSPFYSERLKEA 156
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLC------GGQLDGFSGACIGDSGGPLQCSLKDGRW 394
            V L+  S C  ++  +  +    LC      GG       AC GDSGGPL C L DGR 
Sbjct: 157 HVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVC-LNDGRM 215
Query: 395 YLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            L GI S+G GC +   P VYTK++ YL WIR  +
Sbjct: 216 TLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 250

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 122/250 (48%), Gaps = 24/250 (9%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG+  +Y   Q     G  +   + PWQ ++   + R       CG +LI   WV+TAAH
Sbjct: 2   CGLR-KYKEPQLHSTGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWVLTAAH 60
Query: 74  CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKL- 130
           C         +P+    VLG   R +  + E    V++  VH+EF +  Y++DIALL+L 
Sbjct: 61  CFQESY----LPDQLKVVLGRTYRVKPGEEEQTFKVKKYIVHKEFDDDTYNNDIALLQLK 116
Query: 131 -SRPTSARDK-GVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHN 187
              P  A++   VRA+CL +A+ + +    +C  +G+G+ K      S +L++  V L+ 
Sbjct: 117 SDSPQCAQESDSVRAICLPEANLQ-LPDWTECELSGYGKHKSSSPFYSEQLKEGHVRLYP 175
Query: 188 ISVCRDKYGDSVELHGGHLCGGQLDGFSG--------ACIGDSGGPLQCSLKDGRWYLAG 239
            S C  K+  +  +    LC G  D  SG        AC GDSGGPL C + D    L G
Sbjct: 176 SSRCAPKFLFNKTVTNNMLCAG--DTRSGEIYPNVHDACQGDSGGPLVC-MNDNHMTLLG 232
Query: 240 ITSFGSGYCG 249
           I S+G G CG
Sbjct: 233 IISWGVG-CG 241

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 14/155 (9%)
Query: 287 LKLSRPTSARDK-GVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPL 344
           LK   P  A++   VRA+CL +A+ + +    +C  +G+G+ K      S +L++  V L
Sbjct: 115 LKSDSPQCAQESDSVRAICLPEANLQ-LPDWTECELSGYGKHKSSSPFYSEQLKEGHVRL 173
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSG--------ACIGDSGGPLQCSLKDGRWYL 396
           +  S C  K+  +  +    LC G  D  SG        AC GDSGGPL C + D    L
Sbjct: 174 YPSSRCAPKFLFNKTVTNNMLCAG--DTRSGEIYPNVHDACQGDSGGPLVC-MNDNHMTL 230
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINI 431
            GI S+G GC +   P VYTK++ YL WIR  +++
Sbjct: 231 LGIISWGVGCGEKDVPGVYTKVTNYLGWIRDNMHL 265

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 109/232 (46%), Gaps = 19/232 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ GK   +G  PWQV L V   +L      CG  LI+  WVV+AAHC       +    
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQL------CGGTLINTIWVVSAAHCFDK----IKNWR 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
              AVLG+ D +E +  E    V ++ +   +     +HDIALL+L +P    D  V  +
Sbjct: 51  NLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDH-VVPL 109
Query: 145 CLTD--ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD---KYGDSV 199
           CL +    +R +   +  + +GWG++  +G    +L  + VP      C     K GDS 
Sbjct: 110 CLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSP 169
Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
            +     C G  DG   +C GDSGGP     + G WYL GI S+G G   VG
Sbjct: 170 NITEYMFCAGYSDGSKDSCKGDSGGPHATHYR-GTWYLTGIVSWGQGCATVG 220

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTD--ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           ALL+L +P    D  V  +CL +    +R +   +  + +GWG++  +G    +L  + V
Sbjct: 92  ALLRLHQPVVLTDH-VVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNV 150
Query: 343 PLHNISVCRD---KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           P      C     K GDS  +     C G  DG   +C GDSGGP     + G WYL GI
Sbjct: 151 PRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR-GTWYLTGI 209
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
            S+G GCA  G+  VYT++S Y+ W++K
Sbjct: 210 VSWGQGCATVGHFGVYTRVSQYIEWLQK 237

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 110/235 (46%), Gaps = 32/235 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCI--HNDIFSLPI 84
           ++ G+++  G WPWQVSL+          H CG  L+   WV+TAAHC    N + S   
Sbjct: 1   IVGGRDTSLGRWPWQVSLRYDGA------HLCGGSLLSGDWVLTAAHCFPERNRVLS--- 51
Query: 85  PELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--------HDIALLKLSRPTSA 136
              W    G     +     +++ V+ +  H  +  +         +DIAL+ LS P   
Sbjct: 52  --RWRVFAG--AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPL 107
Query: 137 RDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCR--DK 194
            +  ++ VCL  A +  V+ K  C  TGWG  +  G     L++ RVP+ +  VC   D 
Sbjct: 108 TEY-IQPVCLPAAGQALVDGK-ICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADF 165
Query: 195 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCS---LKDGRWYLAGITSFGSG 246
           YG+ ++      C G  +G   AC GDSGGP  C     +  RW L GI S+G+G
Sbjct: 166 YGNQIKPK--MFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTG 218

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+ LS P    +  ++ VCL  A +  V+ K  C  TGWG  +  G     L++ RVP+
Sbjct: 97  ALVHLSSPLPLTEY-IQPVCLPAAGQALVDGKI-CTVTGWGNTQYYGQQAGVLQEARVPI 154
Query: 345 HNISVCR--DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCS---LKDGRWYLAGI 399
            +  VC   D YG+ ++      C G  +G   AC GDSGGP  C     +  RW L GI
Sbjct: 155 ISNDVCNGADFYGNQIKPK--MFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGI 212
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            S+G+GCA +  P VYTK+S +  WI + I
Sbjct: 213 VSWGTGCALAQKPGVYTKVSDFREWIFQAI 242

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 123/257 (47%), Gaps = 30/257 (11%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG+         ++ NG+ + +G  PW   L  L+ +      +CG  L+  SW+VTAAH
Sbjct: 143 CGLPKFSRKLMAQIFNGRPAQKGTTPWIAMLSHLNGQ-----PFCGGSLLGSSWIVTAAH 197
Query: 74  CIHNDI---------FSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYH 122
           C+H  +           L  P  +  +LG   R   +++E  + V+   +H ++  + + 
Sbjct: 198 CLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFE 257
Query: 123 HDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQ---CVATGWGRVKPKGDLVSKLR 179
           +D+AL++L   +   +  V  +CL      P  P+Q+    + +GWG+ +        L 
Sbjct: 258 NDVALVELLE-SPVLNAFVMPICL------PEGPQQEGAMVIVSGWGK-QFLQRFPETLM 309
Query: 180 QIRVPLHNISVCRDKYGD-SVELHGGHLCGGQLDGFSGACIGDSGGPL-QCSLKDGRWYL 237
           +I +P+ + S C+  Y     ++    +C G+ +G   AC GDSGGP+   + + G+WYL
Sbjct: 310 EIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYL 369
Query: 238 AGITSFGSGYCGVGIRY 254
            G  S+G   CG   RY
Sbjct: 370 VGTVSWGDD-CGKKDRY 385

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 300 VRAVCLTDADKRPVNPKQQ---CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD 356
           V  +CL      P  P+Q+    + +GWG+ +        L +I +P+ + S C+  Y  
Sbjct: 275 VMPICL------PEGPQQEGAMVIVSGWGK-QFLQRFPETLMEIEIPIVDHSTCQKAYAP 327
Query: 357 -SVELHGGHLCGGQLDGFSGACIGDSGGPL-QCSLKDGRWYLAGITSFGSGCAKSGYPDV 414
              ++    +C G+ +G   AC GDSGGP+   + + G+WYL G  S+G  C K     V
Sbjct: 328 LKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGV 387
Query: 415 YTKLSFYLPWIRK 427
           Y+ +     WI++
Sbjct: 388 YSYIHHNKDWIQR 400

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 19/240 (7%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CGV  R   R+ R++ GK +  G  PWQV+++      G+    CG + I   W++TAAH
Sbjct: 309 CGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIK---DASGIT---CGGIYIGGCWILTAAH 362
Query: 74  CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLS 131
           C+          ++WT V+ DW   + ++  +   V+RI  HE ++   Y +DIAL+++ 
Sbjct: 363 CLRAS--KTHRYQIWTTVV-DWIHPDLKRIVIEY-VDRIIFHENYNAGTYQNDIALIEMK 418
Query: 132 RPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS 189
           +  + +D  +           P    P   C+ +GWGR K   + V  L+   V L  IS
Sbjct: 419 KDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREK-DNERVFSLQWGEVKL--IS 475
Query: 190 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            C   YG+         C G  DG   AC GDSGGPL C   +   Y+ G+ S+G   CG
Sbjct: 476 NCSKFYGNRF-YEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGEN-CG 533

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 315 PKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 374
           P   C+ +GWGR K   + V  L+   V L  IS C   YG+         C G  DG  
Sbjct: 445 PNDTCIVSGWGREK-DNERVFSLQWGEVKL--ISNCSKFYGNRF-YEKEMECAGTYDGSI 500
Query: 375 GACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            AC GDSGGPL C   +   Y+ G+ S+G  C K  +P VYTK++ Y  WI   +
Sbjct: 501 DACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHV 555

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 18/230 (7%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIH---NDIFSL 82
           R+ NG E    + PW   L+  + + G     CG  +I   +++TAAHC+H   ND++ +
Sbjct: 118 RVSNGYEVKLSSRPWMALLR--YQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEI 175
Query: 83  PIPELWTAVLGDWDRTEEEKS----EVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSA 136
            + E   +   D  +   +K      V + +E+  +HE++   H  HDIALLKL+R    
Sbjct: 176 RLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPF 235
Query: 137 RDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK 194
           + K ++ +CL  TD  K           TGWG  +  G     L Q  VPL   S C   
Sbjct: 236 Q-KHIKPICLPITDELKEKAEQISTYFVTGWGTTE-NGSSSDVLLQANVPLQPRSACSQA 293
Query: 195 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
           Y  +V L    LC G  D    +C GDSGGPLQ   +    Y   +  FG
Sbjct: 294 YRRAVPL--SQLCVGGGD-LQDSCKGDSGGPLQAPAQYLGEYAPKMVEFG 340

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           ALLKL+R    + K ++ +CL  TD  K           TGWG  +  G     L Q  V
Sbjct: 225 ALLKLNRSVPFQ-KHIKPICLPITDELKEKAEQISTYFVTGWGTTE-NGSSSDVLLQANV 282
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           PL   S C   Y  +V L    LC G  D    +C GDSGGPLQ   +    Y   +  F
Sbjct: 283 PLQPRSACSQAYRRAVPL--SQLCVGGGD-LQDSCKGDSGGPLQAPAQYLGEYAPKMVEF 339
Query: 403 G------SGCAKSGYPDVYTKLSFYLPWI 425
           G        C +   P +YT +  Y+ WI
Sbjct: 340 GIVSQGVVTCGQISLPGLYTNVGEYVQWI 368

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 19/231 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV 199
             VCL D +     +    +   TGWG +K KG   S L+ + +P+    VC+D     +
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQ-PSVLQVVNLPIVERPVCKD--STRI 172
Query: 200 ELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
            +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 173 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 223

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 10/152 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K KG   S L+ + +
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQ-PSVLQVVNL 158
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAG 398
           P+    VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  G
Sbjct: 159 PIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 216
Query: 399 ITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+G GC + G    YT +     WI+K I+
Sbjct: 217 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 248

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 30/244 (12%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDI------- 79
           + NG+ + +G  PW   L  L+ +      +CG  L+  SW+VTAAHC+H  +       
Sbjct: 1   IFNGRPAQKGTTPWIAMLSHLNGQ-----PFCGGSLLGSSWIVTAAHCLHQSLDPKDPTL 55
Query: 80  --FSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTS 135
               L  P  +  +LG   R   +++E  + V+   +H ++  + + +D+AL++L   + 
Sbjct: 56  RDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLE-SP 114
Query: 136 ARDKGVRAVCLTDADKRPVNPKQQ---CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCR 192
             +  V  +CL      P  P+Q+    + +GWG+ +        L +I +P+ + S C+
Sbjct: 115 VLNAFVMPICL------PEGPQQEGAMVIVSGWGK-QFLQRFPETLMEIEIPIVDHSTCQ 167
Query: 193 DKYGD-SVELHGGHLCGGQLDGFSGACIGDSGGPL-QCSLKDGRWYLAGITSFGSGYCGV 250
             Y     ++    +C G+ +G   AC GDSGGP+   + + G+WYL G  S+G   CG 
Sbjct: 168 KAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDD-CGK 226
Query: 251 GIRY 254
             RY
Sbjct: 227 KDRY 230

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 300 VRAVCLTDADKRPVNPKQQ---CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD 356
           V  +CL      P  P+Q+    + +GWG+ +        L +I +P+ + S C+  Y  
Sbjct: 120 VMPICL------PEGPQQEGAMVIVSGWGK-QFLQRFPETLMEIEIPIVDHSTCQKAYAP 172
Query: 357 -SVELHGGHLCGGQLDGFSGACIGDSGGPL-QCSLKDGRWYLAGITSFGSGCAKSGYPDV 414
              ++    +C G+ +G   AC GDSGGP+   + + G+WYL G  S+G  C K     V
Sbjct: 173 LKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGV 232
Query: 415 YTKLSFYLPWIRK 427
           Y+ +     WI++
Sbjct: 233 YSYIHHNKDWIQR 245

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 42/237 (17%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G +  + + PWQV++        +  + CG VLI PSWV+TAAHC  N+        
Sbjct: 1   IVGGYKCEKNSQPWQVAV--------INEYLCGGVLIDPSWVITAAHCYSNN-------- 44
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRP 133
            +  +LG  +  ++E    R  V +   H ++             H++ +D+ LL LS P
Sbjct: 45  -YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEP 103
Query: 134 TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCR 192
                 GV+ +   D   +       C+A+GWG   P   +VS  L+ + + L +   C 
Sbjct: 104 ADITG-GVKVI---DLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCI 159
Query: 193 DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           + Y D+V      LC G+++G    C GDSGGPL C   DG   L GITS G+  C 
Sbjct: 160 ETYKDNVT--DVMLCAGEMEGGKDTCAGDSGGPLIC---DG--VLQGITSGGATPCA 209

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 252 IRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKR 311
           +R S R P  I    +     P  +     +   LL LS P      GV+ +   D   +
Sbjct: 66  VRQSFRHPDYIPLIVTNDTEQPVHDHSNDLM---LLHLSEPADITG-GVKVI---DLPTK 118
Query: 312 PVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL 370
                  C+A+GWG   P   +VS  L+ + + L +   C + Y D+V      LC G++
Sbjct: 119 EPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVT--DVMLCAGEM 176
Query: 371 DGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRK 427
           +G    C GDSGGPL C   DG   L GITS G+  CAK   P +Y KL  +  WI+K
Sbjct: 177 EGGKDTCAGDSGGPLIC---DG--VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKK 229

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 106/236 (44%), Gaps = 27/236 (11%)
Query: 24  QPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLP 83
           +PR+I G  S+ G+ PW  ++ +          +C   L+H  WVV+AAHC  +     P
Sbjct: 33  RPRIIGGSSSLPGSHPWLAAIYIGD-------SFCAGSLVHTCWVVSAAHCFSHS----P 81
Query: 84  IPELWTAVLGD------WDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRP---T 134
             +  + VLG        D T+    E  IP     ++  F+   HD+ L++L +     
Sbjct: 82  PRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYT---LYSVFNPSDHDLVLIRLKKKGDRC 138
Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRD 193
           + R + V+ +CL +          +C   GWG +        S LR+  VPL     C  
Sbjct: 139 ATRSQFVQPICLPEPGST-FPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSS 197
Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
                 ++    LC G  D  S AC GDSGGPL C  K+G  YL GI S+G G CG
Sbjct: 198 PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDG-CG 251

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 294 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRD 352
           + R + V+ +CL +          +C   GWG +        S LR+  VPL     C  
Sbjct: 139 ATRSQFVQPICLPEPGST-FPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSS 197
Query: 353 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYP 412
                 ++    LC G  D  S AC GDSGGPL C  K+G  YL GI S+G GC +   P
Sbjct: 198 PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKP 256
Query: 413 DVYTKLSFYLPWIRKQI 429
            VYT+++ Y+ WI  +I
Sbjct: 257 GVYTRVANYVDWINDRI 273

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 20/225 (8%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         
Sbjct: 15  RIVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------A 62
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRA 143
           + +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V  
Sbjct: 63  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAP 121
Query: 144 VCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  +
Sbjct: 122 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFII 179
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
                C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 180 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 223

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ 
Sbjct: 102 FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKM 160
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 161 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 217
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            S+G GCA+ G   +YTK++ +L WI + +
Sbjct: 218 VSWGEGCARKGKYGIYTKVTAFLKWIDRSM 247

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV 199
             VCL D +     +    +   TGWG +K      S L+ + +P+    VC+D     +
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPSVLQVVNLPIVERPVCKD--STRI 173
Query: 200 ELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
            +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 174 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 224

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K      S L+ + +
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPSVLQVVNL 159
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAG 398
           P+    VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  G
Sbjct: 160 PIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 217
Query: 399 ITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+G GC + G    YT +     WI+K I+
Sbjct: 218 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 249

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 19/231 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV 199
             VCL D +     +    +   TGWG +K  G   S L+ + +P+    VC+D     +
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQ-PSVLQVVNLPIVERPVCKD--STRI 172
Query: 200 ELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
            +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 173 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 223

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K  G   S L+ + +
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQ-PSVLQVVNL 158
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAG 398
           P+    VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  G
Sbjct: 159 PIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 216
Query: 399 ITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+G GC + G    YT +     WI+K I+
Sbjct: 217 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 248

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 19/231 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTAYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV 199
             VCL D +     +    +   TGWG +K  G   S L+ + +P+    VC+D     +
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQ-PSVLQVVNLPIVERPVCKD--STRI 172
Query: 200 ELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
            +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 173 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 223

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K  G   S L+ + +
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQ-PSVLQVVNL 158
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAG 398
           P+    VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  G
Sbjct: 159 PIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 216
Query: 399 ITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+G GC + G    YT +     WI+K I+
Sbjct: 217 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 248

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG+  ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG+  ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG+  ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG+  ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 29/233 (12%)
Query: 16  VGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCI 75
           +G  ++    +++ G E    + P QVSL   +       H+CG  L++ +WVV+AAHC 
Sbjct: 10  IGAAFATEDDKIVGGYECKPYSQPHQVSLNSGY-------HFCGGSLVNENWVVSAAHCY 62
Query: 76  HNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRP 133
            + +            LG+ +    E SE  I   R+  H  + +Y+  +DI L+KLS+P
Sbjct: 63  KSRV---------EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKP 113
Query: 134 TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD 193
            +  +  V+ V L  +          C  +GWG         +KL+ + +P+ + S C +
Sbjct: 114 AT-LNTYVQPVALPTSCAP---AGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNN 169
Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 170 SYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 215

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L+KLS+P +  +  V+ V L  +          C  +GWG         +KL+ + +P+ 
Sbjct: 107 LIKLSKPAT-LNTYVQPVALPTSCAPA---GTMCTVSGWGNTMSSTADSNKLQCLNIPIL 162
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           + S C + Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 163 SYSDCNNSYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 215
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
           CA+ G P VY K+  +  W+   +
Sbjct: 216 CAEPGNPGVYAKVCIFNDWLTSTM 239

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 29/222 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E++  +WP Q +L +         ++CG  LI P W++TAAHC+    F      
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDM------YFCGGSLISPEWILTAAHCMDGAGFV----- 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVRAV 144
               VLG  +  E+E ++V I      VHE ++++   +DIA+++L  P +     +  V
Sbjct: 50  --DVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLT-AAIATV 106
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHG 203
            L   D   V        TGWG        +S  LRQ+ VP+ + + C   YG   +   
Sbjct: 107 GLPSTD---VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTD--- 160
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
           G++C     G  G C GDSGGPL     +G  Y  GITSFG+
Sbjct: 161 GNICIDSTGG-KGTCNGDSGGPLN---YNGLTY--GITSFGA 196

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 30/153 (19%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
           L+AA+  +  P++  D GV  V         V P      TGWG        +S  LRQ+
Sbjct: 99  LTAAIATVGLPST--DVGVGTV---------VTP------TGWGLPSDSALGISDVLRQV 141
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
            VP+ + + C   YG   +   G++C     G  G C GDSGGPL     +G  Y  GIT
Sbjct: 142 DVPIMSNADCDAVYGIVTD---GNICIDSTGG-KGTCNGDSGGPLN---YNGLTY--GIT 192
Query: 401 SFGS--GCAKSGYPDVYTKLSFYLPWIRKQINI 431
           SFG+  GC ++GYPD +T+++++L WI+ Q  I
Sbjct: 193 SFGAAAGC-EAGYPDAFTRVTYFLDWIQTQTGI 224

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  LI P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHC----FIDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ +CL      P      C  TG+G+      L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 285 ALLKLSRPTSAR----DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQ 339
           ALLK+ R    R     + ++ +CL      P      C  TG+G+      L   +L+ 
Sbjct: 99  ALLKI-RSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKM 156
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
             V L +   C+  +    E+    LC       + +C GDSGGPL CSL+ GR  L GI
Sbjct: 157 TVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGI 215
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            S+G GCA    P VYT++S +LPWIR
Sbjct: 216 VSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  L+ P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLMSPCWVISATHCF----IDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ +CL      P      C  TG+G+      L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTICLPSMYNDP-QFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + AC GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDACQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 285 ALLKLSRPTSAR----DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQ 339
           ALLK+ R    R     + ++ +CL      P      C  TG+G+      L   +L+ 
Sbjct: 99  ALLKI-RSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKEASTDYLYPEQLKM 156
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
             V L +   C+  +    E+    LC       + AC GDSGGPL CSL+ GR  L GI
Sbjct: 157 TVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDACQGDSGGPLVCSLQ-GRMTLTGI 215
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            S+G GCA    P VYT++S +LPWIR
Sbjct: 216 VSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 21/231 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV 199
             VCL D +     +    +   TGWG +K +    S L+ + +P+    VC+D     +
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKGQP---SVLQVVNLPIVERPVCKD--STRI 170
Query: 200 ELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
            +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 171 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 221

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K +    S L+ + +
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKGQP---SVLQVVNL 156
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAG 398
           P+    VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  G
Sbjct: 157 PIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 214
Query: 399 ITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+G GC + G    YT +     WI+K I+
Sbjct: 215 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 246

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 112/248 (45%), Gaps = 22/248 (8%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           ++I G+ +     PW  ++   H R G + + CG  L+ P WV++A HC        P  
Sbjct: 23  KIIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLMSPCWVISATHCF----IDYPKK 77
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSAR---- 137
           E +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R    
Sbjct: 78  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQP 136
Query: 138 DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYG 196
            + ++ +CL      P      C  TG+G+      L   +L+   V L +   C+  + 
Sbjct: 137 SRTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY 195
Query: 197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVG 251
              E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV 
Sbjct: 196 YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVY 254
Query: 252 IRYSHRQP 259
            R SH  P
Sbjct: 255 TRVSHFLP 262

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 285 ALLKLSRPTSAR----DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQ 339
           ALLK+ R    R     + ++ +CL      P      C  TG+G+      L   +L+ 
Sbjct: 122 ALLKI-RSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKM 179
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
             V L +   C+  +    E+    LC       + +C GDSGGPL CSL+ GR  L GI
Sbjct: 180 TVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGI 238
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            S+G GCA    P VYT++S +LPWIR
Sbjct: 239 VSWGRGCALKDKPGVYTRVSHFLPWIR 265

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 27  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 82
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 83  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 142
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 143 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 200
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 201 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 258
Query: 243 FGSG 246
           +G G
Sbjct: 259 WGEG 262

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 133 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 190
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 191 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 248
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 249 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 287

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 25  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 80
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 81  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 140
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 141 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 198
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 199 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256
Query: 243 FGSG 246
           +G G
Sbjct: 257 WGEG 260

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 131 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 188
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 189 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 246
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 247 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 112/247 (45%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  L+ P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLMSPCWVISATHCF----IDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ +CL      P      C  TG+G+ +    L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTICLPSMYNDP-QFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 285 ALLKLSRPTSAR----DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQ 339
           ALLK+ R    R     + ++ +CL      P      C  TG+G+ +    L   +L+ 
Sbjct: 99  ALLKI-RSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKEQSTDYLYPEQLKM 156
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
             V L +   C+  +    E+    LC       + +C GDSGGPL CSL+ GR  L GI
Sbjct: 157 TVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGI 215
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            S+G GCA    P VYT++S +LPWIR
Sbjct: 216 VSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 27  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 82
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 83  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 142
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 143 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 200
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 201 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 258
Query: 243 FGSG 246
           +G G
Sbjct: 259 WGEG 262

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 133 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 190
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 191 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 248
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 249 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 287

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 25  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 80
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 81  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 140
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 141 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 198
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 199 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256
Query: 243 FGSG 246
           +G G
Sbjct: 257 WGEG 260

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 131 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 188
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 189 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 246
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 247 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 31  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 86
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 87  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 146
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 147 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 204
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 205 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 262
Query: 243 FGSG 246
           +G G
Sbjct: 263 WGEG 266

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 137 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 194
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 195 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 252
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 253 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 291

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 24  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 79
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 80  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 139
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 140 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 197
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 198 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 255
Query: 243 FGSG 246
           +G G
Sbjct: 256 WGEG 259

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 130 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 187
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 188 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 245
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 246 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 284

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +   EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTAAEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GDSGGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ + V
Sbjct: 90  AVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEV 148
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P  + + C  K   S  +     C G       AC GDSGGP     KD  +++ GI S+
Sbjct: 149 PYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSW 205
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           G GCA+ G   +YTK++ +L WI + + 
Sbjct: 206 GEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 25  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 80
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 81  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 140
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 141 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 198
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 199 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256
Query: 243 FGSG 246
           +G G
Sbjct: 257 WGEG 260

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 131 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 188
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 189 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 246
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 247 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 20/224 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E   G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGQECKDGECPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           CL + D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C  K   S  + 
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC--KLSSSFIIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G       AC GD+GGP     KD  +++ GI S+G G
Sbjct: 166 QNMFCAGYDTKQEDACQGDAGGPHVTRFKD-TYFVTGIVSWGEG 208

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQ 339
              A+L+L  P + R   V   CL + D  +  +  ++  + +G+GR   KG   ++L+ 
Sbjct: 87  FDIAVLRLKTPITFR-MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKM 145
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           + VP  + + C  K   S  +     C G       AC GD+GGP     KD  +++ GI
Sbjct: 146 LEVPYVDRNSC--KLSSSFIITQNMFCAGYDTKQEDACQGDAGGPHVTRFKD-TYFVTGI 202
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA+ G   +YTK++ +L WI + + 
Sbjct: 203 VSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 31  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 86
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 87  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 146
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 147 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 204
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 205 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 262
Query: 243 FGSG 246
           +G G
Sbjct: 263 WGEG 266

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 137 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 194
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 195 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 252
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 253 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 291

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  L+ P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLMSPCWVISATHCF----IDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ +CL      P      C  TG+G+      L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Query: 285 ALLKLSRPTSAR----DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQ 339
           ALLK+ R    R     + ++ +CL      P      C  TG+G+      L   +L+ 
Sbjct: 99  ALLKI-RSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKM 156
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
             V L +   C+  +    E+    LC       + +C GDSGGPL CSL+ GR  L GI
Sbjct: 157 TVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGI 215
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            S+G GCA    P VYT++S +LPWIR  
Sbjct: 216 VSWGRGCALKDKPGVYTRVSHFLPWIRSH 244

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 30/224 (13%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +++ G      + P+QVSL           H+CG  LI+  WVV+AAHC  + I      
Sbjct: 8   KIVGGYTCAANSIPYQVSLNS-------GSHFCGGSLINSQWVVSAAHCYKSRI------ 54
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRA 143
                 LG+ +    E +E  I   +I  H  F  +   +DI L+KLS P +   +    
Sbjct: 55  ---QVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSR---- 107
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
           V      +       +C+ +GWG  K  G     L Q ++ P+ + S C+  Y    ++ 
Sbjct: 108 VATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPG--QIT 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           G  +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 166 GNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYG 204

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 39/233 (16%)
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLI 262
           G H CGG                   SL + +W ++    + S    + +R       ++
Sbjct: 29  GSHFCGG-------------------SLINSQWVVSAAHCYKSR---IQVRLGEHNIDVL 66
Query: 263 NGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQ 317
            G E    A      P  N  T      L+KLS P +   +    V      +       
Sbjct: 67  EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSR----VATVSLPRSCAAAGT 122
Query: 318 QCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGA 376
           +C+ +GWG  K  G     L Q ++ P+ + S C+  Y    ++ G  +C G L+G   +
Sbjct: 123 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPG--QITGNMICVGFLEGGKDS 180
Query: 377 CIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           C GDSGGP+ C+ +     L GI S+G GCA+   P VYTK+  Y+ WI++ I
Sbjct: 181 CQGDSGGPVVCNGQ-----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 228

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  L+ P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLMSPCWVISATHCF----IDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ +CL      P      C  TG+G+      L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 285 ALLKLSRPTSAR----DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQ 339
           ALLK+ R    R     + ++ +CL      P      C  TG+G+      L   +L+ 
Sbjct: 99  ALLKI-RSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKM 156
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
             V L +   C+  +    E+    LC       + +C GDSGGPL CSL+ GR  L GI
Sbjct: 157 TVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGI 215
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            S+G GCA    P VYT++S +LPWIR
Sbjct: 216 VSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 160 SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 215
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 216 DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 275
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 276 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 333
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 334 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 391
Query: 243 FGSG 246
           +G G
Sbjct: 392 WGEG 395

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 266 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 323
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 324 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 381
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 382 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 420

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  L+ P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLMSPCWVISATHCF----IDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ +CL      P      C  TG+G+      L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTICLPSMYNDP-QFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 285 ALLKLSRPTSAR----DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQ 339
           ALLK+ R    R     + ++ +CL      P      C  TG+G+      L   +L+ 
Sbjct: 99  ALLKI-RSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKEASTDYLYPEQLKM 156
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
             V L +   C+  +    E+    LC       + +C GDSGGPL CSL+ GR  L GI
Sbjct: 157 TVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGI 215
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            S+G GCA    P VYT++S +LPWIR
Sbjct: 216 VSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSAYPG--QITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSAYPG--QITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  L+ P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLMSPCWVISATHCF----IDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ +CL      P      C  TG+G+      L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTICLPSMYNDP-QFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Query: 285 ALLKLSRPTSAR----DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQ 339
           ALLK+ R    R     + ++ +CL      P      C  TG+G+      L   +L+ 
Sbjct: 99  ALLKI-RSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKEASTDYLYPEQLKM 156
Query: 340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
             V L +   C+  +    E+    LC       + +C GDSGGPL CSL+ GR  L GI
Sbjct: 157 TVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGI 215
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            S+G GCA    P VYT++S +LPWIR  
Sbjct: 216 VSWGRGCALKDKPGVYTRVSHFLPWIRSH 244

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 44  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 99
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 100 DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 159
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 160 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 217
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GD+GGP    S  + RWY  GI S
Sbjct: 218 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVS 275
Query: 243 FGSG 246
           +G G
Sbjct: 276 WGEG 279

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 150 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 207
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GD+GGP    S  +
Sbjct: 208 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFN 265
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 266 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 304

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 115/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 25  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 80
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E +  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 81  DKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 140
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 141 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 198
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S
Sbjct: 199 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256
Query: 243 FGSG 246
           +G G
Sbjct: 257 WGEG 260

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 131 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 188
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 189 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 246
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 247 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL           H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCAANSIPYQVSLNS-------GSHFCGGSLINSQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H  F  +   +DI L+KLS P +   +    V
Sbjct: 47  --QVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSR----V 100
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHG 203
                 +       +C+ +GWG  K  G     L Q ++ P+ + S C+  Y    ++ G
Sbjct: 101 ATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPG--QITG 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 159 NMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYG 196

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 12/145 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPL 344
           L+KLS P +   +    V      +       +C+ +GWG  K  G     L Q ++ P+
Sbjct: 87  LIKLSSPATLNSR----VATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPV 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + S C+  Y    ++ G  +C G L+G   +C GDSGGP+ C+ +     L GI S+G 
Sbjct: 143 LSDSSCKSSYPG--QITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGY 195
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+   P VYTK+  Y+ WI++ I
Sbjct: 196 GCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 27/254 (10%)
Query: 13  DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
           DCG    Y     +++NG +++   +PW   +   +         CG  LI+  ++VTAA
Sbjct: 13  DCG----YQVEADKILNGDDTVPEEFPWTAMIGYKNSS-NFEQFACGGSLINNRYIVTAA 67
Query: 73  HCIHNDIFSLPIPELWTAVLGDWDRTEEEK-----------SEVRIPVERIRVHEEF--- 118
           HC+   +  + +  L    LG+W+   +               + + +E    H ++   
Sbjct: 68  HCVAGRVLRV-VGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDG 126
Query: 119 -HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 177
             + +HDIAL++L+R     +  +R VCL   ++  V   Q+    GWGR +  G   + 
Sbjct: 127 SKDRYHDIALIRLNRQVEFTNY-IRPVCLPQPNEE-VQVGQRLTVVGWGRTE-TGQYSTI 183
Query: 178 LRQIRVPLHNISVCRDKYGDS-VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 236
            +++ VP+ +   C   +G + V +    LC G  +    +C GDSGGPL     + +++
Sbjct: 184 KQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLLAERANQQFF 242
Query: 237 LAGITSFGSGYCGV 250
           L G+ SFG+  CG 
Sbjct: 243 LEGLVSFGA-TCGT 255

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL++L+R     +  +R VCL   ++  V   Q+    GWGR +  G   +  +++ VP+
Sbjct: 135 ALIRLNRQVEFTNY-IRPVCLPQPNEE-VQVGQRLTVVGWGRTE-TGQYSTIKQKLAVPV 191
Query: 345 HNISVCRDKYGDS-VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
            +   C   +G + V +    LC G  +    +C GDSGGPL     + +++L G+ SFG
Sbjct: 192 VHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLLAERANQQFFLEGLVSFG 250
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQI 429
           + C   G+P +YTK+  Y  WI   I
Sbjct: 251 ATCGTEGWPGIYTKVGKYRDWIEGNI 276

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 114/239 (47%), Gaps = 26/239 (10%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     
Sbjct: 1   RIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFT 56
Query: 86  ELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKG 140
           E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  
Sbjct: 57  ENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY- 115
Query: 141 VRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVC 191
           +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC
Sbjct: 116 IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVC 174
Query: 192 RDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           +D     + +     C G    +G  G AC GD+GGP    S  + RWY  GI S+G G
Sbjct: 175 KD--STRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEG 231

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 102 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 159
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GD+GGP    S  +
Sbjct: 160 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFN 217
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 218 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 256

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL           H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCAANSVPYQVSLNS-------GSHFCGGSLINSQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H  F  +   +DI L+KLS P +   +    V
Sbjct: 47  --QVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSR----V 100
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHG 203
                 +       +C+ +GWG  K  G     L Q ++ P+ + S C+  Y    ++ G
Sbjct: 101 ATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSAYPG--QITG 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 159 NMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYG 196

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 12/145 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPL 344
           L+KLS P +   +    V      +       +C+ +GWG  K  G     L Q ++ P+
Sbjct: 87  LIKLSSPATLNSR----VATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPV 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + S C+  Y    ++ G  +C G L+G   +C GDSGGP+ C+ +     L GI S+G 
Sbjct: 143 LSDSSCKSAYPG--QITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGY 195
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+   P VYTK+  Y+ WI++ I
Sbjct: 196 GCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 116/244 (47%), Gaps = 26/244 (10%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+   R++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 26  SYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 81
Query: 81  SLPIPELWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTS 135
                E    V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +
Sbjct: 82  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 141
Query: 136 ARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLH 186
             D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +P+ 
Sbjct: 142 FSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIV 199
Query: 187 NISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITS 242
              VC+D     + +     C G    +G  G AC GD+GGP    S  + RWY  GI S
Sbjct: 200 ERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVS 257
Query: 243 FGSG 246
           +G G
Sbjct: 258 WGEG 261

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 132 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 189
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GD+GGP    S  +
Sbjct: 190 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFN 247
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 248 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 286

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +++ G        P+QVSL   +       H+CG  LI+  WVV+AAHC  + I      
Sbjct: 20  KIVGGYTCGANTVPYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI------ 66
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRA 143
                 LG+ +    E +E  I   +  VH  +++   ++DI L+KL    S   + V +
Sbjct: 67  ---QVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VAS 122
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELH 202
           + L  +     +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++ 
Sbjct: 123 ISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QIT 177
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G L+G   +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 178 SNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSG 216

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 25/241 (10%)
Query: 197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQC--SLKDGRWYLAGITSFGSGYCGVGIRY 254
           D  ++ GG+ CG     +    +  + G   C  SL + +W ++    + SG   + +R 
Sbjct: 17  DDDKIVGGYTCGANTVPYQ---VSLNSGYHFCGGSLINSQWVVSAAHCYKSG---IQVRL 70
Query: 255 SHRQPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDAD 309
                 ++ G E    A      P  N  T      L+KL    S   + V ++ L  + 
Sbjct: 71  GEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS- 128
Query: 310 KRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGG 368
               +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G
Sbjct: 129 --CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAG 184
Query: 369 QLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            L+G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ 
Sbjct: 185 YLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQT 239
Query: 429 I 429
           I
Sbjct: 240 I 240

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 16  VGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCI 75
           +G  ++    +++ G E    +   QVSL   +       H+CG  L++ +WVV+AAHC 
Sbjct: 5   IGAAFATEDDKIVGGYECKAYSQAHQVSLNSGY-------HFCGGSLVNENWVVSAAHCY 57
Query: 76  HNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRP 133
            + +            LG+ +    E SE  I   R+  H  + +Y+  +DI L+KLS+P
Sbjct: 58  KSRV---------EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKP 108
Query: 134 TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD 193
            +  +  V+ V L  +          C  +GWG         +KL+ + +P+ + S C +
Sbjct: 109 AT-LNTYVQPVALPTSCAP---AGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNN 164
Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 165 SYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 210

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L+KLS+P +  +  V+ V L  +          C  +GWG         +KL+ + +P+ 
Sbjct: 102 LIKLSKPAT-LNTYVQPVALPTSCAPA---GTMCTVSGWGNTMSSTADSNKLQCLNIPIL 157
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           + S C + Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 158 SYSDCNNSYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 210
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
           CA+ G P VY K+  +  W+   +
Sbjct: 211 CAEPGNPGVYAKVCIFNDWLTSTM 234

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL           H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCAANSIPYQVSLNS-------GSHFCGGSLINSQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H  F  +   +DI L+KLS P +   +    V
Sbjct: 47  --QVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSR----V 100
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHG 203
                 +       +C+ +GWG  K  G     L Q ++ P+ + S C+  Y    ++ G
Sbjct: 101 ATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPG--QITG 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 159 NMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYG 196

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 12/145 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPL 344
           L+KLS P +   +    V      +       +C+ +GWG  K  G     L Q ++ P+
Sbjct: 87  LIKLSSPATLXSR----VATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPV 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + S C+  Y    ++ G  +C G L+G   +C GDSGGP+ C+ +     L GI S+G 
Sbjct: 143 LSDSSCKSSYPG--QITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGY 195
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+   P VYTK+  Y+ WI++ I
Sbjct: 196 GCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 109/246 (44%), Gaps = 18/246 (7%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           ++I G+ +     PW  ++   H R G + + CG  LI P WV++A HC        P  
Sbjct: 15  KIIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHC----FIDYPKK 69
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGV 141
           E +   LG        + E++  VE + +H+++      +H+DIALLK+        +  
Sbjct: 70  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPS 129
Query: 142 RAVCLTDADKRPVNPK--QQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDS 198
           R +          +P+    C  TG+G+      L   +L+   V L +   C+  +   
Sbjct: 130 RTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYG 189
Query: 199 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGIR 253
            E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  R
Sbjct: 190 SEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTR 248
Query: 254 YSHRQP 259
            SH  P
Sbjct: 249 VSHFLP 254

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 319 CVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C  TG+G+      L   +L+   V L +   C+  +    E+    LC       + +C
Sbjct: 150 CEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSC 209
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            GDSGGPL CSL+ GR  L GI S+G GCA    P VYT++S +LPWIR
Sbjct: 210 QGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 257

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +++ G        P+QVSL   +       H+CG  LI+  WVV+AAHC  + I      
Sbjct: 6   KIVGGYTCGANTVPYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI------ 52
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRA 143
                 LG+ +    E +E  I   +  VH  +++   ++DI L+KL    S   + V +
Sbjct: 53  ---QVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VAS 108
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELH 202
           + L  +     +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++ 
Sbjct: 109 ISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QIT 163
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G L+G   +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 164 SNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSG 202

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 25/241 (10%)
Query: 197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQC--SLKDGRWYLAGITSFGSGYCGVGIRY 254
           D  ++ GG+ CG     +    +  + G   C  SL + +W ++    + SG   + +R 
Sbjct: 3   DDDKIVGGYTCGANTVPYQ---VSLNSGYHFCGGSLINSQWVVSAAHCYKSG---IQVRL 56
Query: 255 SHRQPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDAD 309
                 ++ G E    A      P  N  T      L+KL    S   + V ++ L  + 
Sbjct: 57  GEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS- 114
Query: 310 KRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGG 368
               +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G
Sbjct: 115 --CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAG 170
Query: 369 QLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            L+G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ 
Sbjct: 171 YLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQT 225
Query: 429 I 429
           I
Sbjct: 226 I 226

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +++ G        P+QVSL   +       H+CG  LI+  WVV+AAHC  + I      
Sbjct: 14  KIVGGYTCGANTVPYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI------ 60
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRA 143
                 LG+ +    E +E  I   +  VH  +++   ++DI L+KL    S   + V +
Sbjct: 61  ---QVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VAS 116
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELH 202
           + L  +     +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++ 
Sbjct: 117 ISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QIT 171
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G L+G   +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 172 SNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSG 210

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 30  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 67
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 68  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 123
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 124 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 181
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 182 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 234

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL           H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCAANSIPYQVSLNS-------GSHFCGGSLINSQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H  F  +   +DI L+KLS P +   +    V
Sbjct: 47  --QVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSR----V 100
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHG 203
                 +       +C+ +GWG  K  G     L Q ++ P+ + S C+  Y    ++ G
Sbjct: 101 ATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSSYPG--QITG 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             +C G L G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 159 NMICVGFLQGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYG 196

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPL 344
           L+KLS P +   +    V      +       +C+ +GWG  K  G     L Q ++ P+
Sbjct: 87  LIKLSSPATLNSR----VATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPV 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + S C+  Y    ++ G  +C G L G   +C GDSGGP+ C+ +     L GI S+G 
Sbjct: 143 LSNSSCKSSYPG--QITGNMICVGFLQGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGY 195
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+   P VYTK+  Y+ WI++ I
Sbjct: 196 GCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G  S+ G+ PW  ++ +          +C   L+H  WVV+AAHC  +     P  +
Sbjct: 1   IIGGSSSLPGSHPWLAAIYI-------GDSFCAGSLVHTCWVVSAAHCFSHS----PPRD 49
Query: 87  LWTAVLGD------WDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRP---TSAR 137
             + VLG        D T+    E  IP     ++  F+   HD+ L++L +     + R
Sbjct: 50  SVSVVLGQHFFNRTTDVTQTFGIEKYIPYT---LYSVFNPSDHDLVLIRLKKKGDRCATR 106
Query: 138 DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRDKYG 196
            + V+ +CL +          +C   GWG +        S LR+  VPL     C     
Sbjct: 107 SQFVQPICLPEPGST-FPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 165
Query: 197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              ++    LC G  D  S AC GDSGGPL C  K+G  YL GI S+G G CG
Sbjct: 166 YGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDG-CG 216

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 294 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRD 352
           + R + V+ +CL +          +C   GWG +        S LR+  VPL     C  
Sbjct: 104 ATRSQFVQPICLPEPGST-FPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSS 162
Query: 353 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYP 412
                 ++    LC G  D  S AC GDSGGPL C  K+G  YL GI S+G GC +   P
Sbjct: 163 PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKP 221
Query: 413 DVYTKLSFYLPWIRKQI 429
            VYT+++ Y+ WI  +I
Sbjct: 222 GVYTRVANYVDWINDRI 238

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G  S+ G+ PW  ++ +          +C   L+H  WVV+AAHC  +     P  +
Sbjct: 1   IIGGSSSLPGSHPWLAAIYI-------GDSFCAGSLVHTCWVVSAAHCFSHS----PPRD 49
Query: 87  LWTAVLGD------WDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRP---TSAR 137
             + VLG        D T+    E  IP     ++  F+   HD+ L++L +     + R
Sbjct: 50  SVSVVLGQHFFNRTTDVTQTFGIEKYIPYT---LYSVFNPSDHDLVLIRLKKKGDRCATR 106
Query: 138 DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRDKYG 196
            + V+ +CL +          +C   GWG +        S LR+  VPL     C     
Sbjct: 107 SQFVQPICLPEPGST-FPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 165
Query: 197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              ++    LC G  D  S AC GDSGGPL C  K+G  YL GI S+G G CG
Sbjct: 166 YGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDG-CG 216

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 294 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRD 352
           + R + V+ +CL +          +C   GWG +        S LR+  VPL     C  
Sbjct: 104 ATRSQFVQPICLPEPGST-FPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSS 162
Query: 353 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYP 412
                 ++    LC G  D  S AC GDSGGPL C  K+G  YL GI S+G GC +   P
Sbjct: 163 PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKP 221
Query: 413 DVYTKLSFYLPWIRKQI 429
            VYT+++ Y+ WI  +I
Sbjct: 222 GVYTRVANYVDWINDRI 238

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E  + + PWQ +L             CG +L+H  WV+TAAHCI ++       +
Sbjct: 1   IVGGWECEQHSQPWQAAL------YHFSTFQCGGILVHRQWVLTAAHCISDNY------Q 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-------------NYHHDIALLKLSRP 133
           LW   LG  +  ++E +   + V     H  F+             +Y HD+ LL+L+ P
Sbjct: 49  LW---LGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEP 105
Query: 134 TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCR 192
                  V+ V L   +         C+A+GWG ++P+       L+ + + +     C+
Sbjct: 106 ADTITDAVKVVELPTEEPEV---GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECK 162
Query: 193 DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV 250
             +   V      LC G L+G    C+GDSGGPL C   DG   L G+TS+G   CG 
Sbjct: 163 KAHVQKVT--DFMLCVGHLEGGKDTCVGDSGGPLMC---DG--VLQGVTSWGYVPCGT 213

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPL 344
           LL+L+ P       V+ V L   +         C+A+GWG ++P+       L+ + + +
Sbjct: 99  LLRLTEPADTITDAVKVVELPTEEPEV---GSTCLASGWGSIEPENFSFPDDLQCVDLKI 155
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C+  +   V      LC G L+G    C+GDSGGPL C   DG   L G+TS+G 
Sbjct: 156 LPNDECKKAHVQKVT--DFMLCVGHLEGGKDTCVGDSGGPLMC---DG--VLQGVTSWGY 208
Query: 405 -GCAKSGYPDVYTKLSFYLPWIRKQI 429
             C     P V  ++  Y+ WI   I
Sbjct: 209 VPCGTPNKPSVAVRVLSYVKWIEDTI 234

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCXKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGXLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 99/219 (45%), Gaps = 25/219 (11%)
Query: 225 PLQCSLKDGRWYLAG--ITS---FGSGYC---GVGIRYSHRQPRLINGKESIRGAW---- 272
           P Q SL  G  +  G  I S     + +C   G+ +R       ++ G E    A     
Sbjct: 13  PYQVSLNSGYHFCGGSLINSQWVVSAAHCXKSGIQVRLGEDNINVVEGNEQFISASKSIV 72
Query: 273 -PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P  N  T      L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G
Sbjct: 73  HPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSG 128
Query: 332 DLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
                 L+ ++ P+ + S C+  Y    ++     C G L+G   +C GDSGGP+ CS K
Sbjct: 129 TSXPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGXLEGGKDSCQGDSGGPVVCSGK 186
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 187 -----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +++ G        P+QVSL   +       H+CG  LI+  WVV+AAHC  + I      
Sbjct: 5   KIVGGYTCGANTVPYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI------ 51
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRA 143
                 LG+ +    E +E  I   +  VH  +++   ++DI L+KL    S   + V +
Sbjct: 52  ---QVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VAS 107
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELH 202
           + L  +     +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++ 
Sbjct: 108 ISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QIT 162
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G L+G   +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 163 SNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSG 201

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 21  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 58
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 59  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 114
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 115 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 172
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 173 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 225

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G      + P+QVSL           H+CG  LI+  WVV+AAHC  + I        
Sbjct: 2   VGGYTCAANSIPYQVSLNS-------GSHFCGGSLINSQWVVSAAHCYKSRI-------- 46
Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
               LG+ +    E +E  I   +I  H  F  +   +DI L+KLS P +   +    V 
Sbjct: 47  -QVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSR----VA 101
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHGG 204
                +       +C+ +GWG  K  G     L Q ++ P+ + S C+  Y    ++ G 
Sbjct: 102 TVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPG--QITGN 159
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 160 MICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYG 196

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 12/145 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ-IRVPL 344
           L+KLS P +   +    V      +       +C+ +GWG  K  G     L Q ++ P+
Sbjct: 87  LIKLSSPATLNSR----VATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPV 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + S C+  Y    ++ G  +C G L+G   +C GDSGGP+ C+ +     L GI S+G 
Sbjct: 143 LSDSSCKSSYPG--QITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGY 195
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+   P VYTK+  Y+ WI++ I
Sbjct: 196 GCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 21/220 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E    + P+    + L  ++G    +CG  L+   +V+TAAHC    +       
Sbjct: 1   IIGGNEISPHSRPYMAYYEFL--KVGGKKMFCGGFLVRDKFVLTAAHCKGRSM------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
             T  LG  +   +E+++  IPV +   H +++  +  +DI LLKL R  + R + VR +
Sbjct: 52  --TVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVR-NAKRTRAVRPL 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L   +   V P  +C   GWG+V P G+    L ++++ +    VC  ++  S      
Sbjct: 109 NLPRRNAH-VKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYN-RAN 166
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
            +C G       +  GDSGGPL C     +   AGI S+G
Sbjct: 167 EICVGDSKIKGASFRGDSGGPLVC-----KRAAAGIVSYG 201

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           LLKL R  + R + VR + L   +   V P  +C   GWG+V P G+    L ++++ + 
Sbjct: 92  LLKLVR-NAKRTRAVRPLNLPRRNAH-VKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQ 149
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
              VC  ++  S       +C G       +  GDSGGPL C     +   AGI S+G  
Sbjct: 150 KDQVCESQFQSSYN-RANEICVGDSKIKGASFRGDSGGPLVC-----KRAAAGIVSYGQ- 202
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
                 P V+T++  ++ WI+K +
Sbjct: 203 -TDGSAPQVFTRVLSFVSWIKKTM 225

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GCA+ G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWIQKVID 255

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACQGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACQGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI   WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLIDSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +  +  ++DI L+KL +  ++ D  V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYDSNTLNNDIMLIKL-KSAASLDSRVASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL D +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLIDSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  +  T      L+KL +  ++ D  V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYDSNTLNNDIMLIKL-KSAASLDSRVASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC   G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 111/238 (46%), Gaps = 22/238 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L   H R       CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCLLYPPWDKNFTE 60
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 61  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 119
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 120 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 178
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C      +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 179 D--STRIRITDNMFCAYYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 234

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 105 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 162
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C      +G  G AC GDSGGP    S  +
Sbjct: 163 VLQVVNLPIVERPVCKD--STRIRITDNMFCAYYKPDEGKRGDACEGDSGGPFVMKSPFN 220
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 221 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 259

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGKG 230

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKKWIQKVID 255

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  LI P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHC----FIDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ + L      P      C  TG+G+ +    L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTIALPSMYNDP-QFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 319 CVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C  TG+G+ +    L   +L+   V L +   C+  +    E+    LC       + +C
Sbjct: 135 CEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSC 194
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            GDSGGPL CSL+ GR  L GI S+G GCA    P VYT++S +LPWIR
Sbjct: 195 QGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLXSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLXSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKKWIQKVID 255

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  LI P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHC----FIDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ + L      P      C  TG+G+ +    L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTIALPSMYNDP-QFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 319 CVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C  TG+G+ +    L   +L+   V L +   C+  +    E+    LC       + +C
Sbjct: 135 CEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSC 194
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            GDSGGPL CSL+ GR  L GI S+G GCA    P VYT++S +LPWIR
Sbjct: 195 QGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G P  YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWIQKVID 255

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +++ G        P+QVSL   +       H+CG  LI+  WVV+AAHC  + I      
Sbjct: 20  KIVGGYTCGANTVPYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI------ 66
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRA 143
                 LG+ +    E +E  I   +  VH  +++   ++DI L+KL    S   + V +
Sbjct: 67  ---QVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VAS 122
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELH 202
           + L  +     +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++ 
Sbjct: 123 ISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QIT 177
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               C G L+G   +C GD+GGP+ CS K     L GI S+GSG
Sbjct: 178 SNMFCAGYLEGGKDSCQGDAGGPVVCSGK-----LQGIVSWGSG 216

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 25/241 (10%)
Query: 197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQC--SLKDGRWYLAGITSFGSGYCGVGIRY 254
           D  ++ GG+ CG     +    +  + G   C  SL + +W ++    + SG   + +R 
Sbjct: 17  DDDKIVGGYTCGANTVPYQ---VSLNSGYHFCGGSLINSQWVVSAAHCYKSG---IQVRL 70
Query: 255 SHRQPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDAD 309
                 ++ G E    A      P  N  T      L+KL    S   + V ++ L  + 
Sbjct: 71  GEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS- 128
Query: 310 KRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGG 368
               +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G
Sbjct: 129 --CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAG 184
Query: 369 QLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            L+G   +C GD+GGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ 
Sbjct: 185 YLEGGKDSCQGDAGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQT 239
Query: 429 I 429
           I
Sbjct: 240 I 240

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 18/245 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  LI P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHC----FIDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVR 142
            +   LG        + E++  VE + +H+++      +H+DIALLK+        +  R
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSR 115
Query: 143 AVCLTDADKRPVNPK--QQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSV 199
            +          +P+    C  TG+G+      L   +L+   V L +   C+  +    
Sbjct: 116 TIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGIRY 254
           E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  R 
Sbjct: 176 EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRV 234
Query: 255 SHRQP 259
           SH  P
Sbjct: 235 SHFLP 239

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 319 CVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C  TG+G+      L   +L+   V L +   C+  +    E+    LC       + +C
Sbjct: 135 CEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSC 194
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            GDSGGPL CSL+ GR  L GI S+G GCA    P VYT++S +LPWIR
Sbjct: 195 QGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  ++    ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNKRRKNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N         L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNKRRKNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V +V L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASVSLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ C+ K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCAGK-----LQGIVSWGSG 196

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V +V L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASVSLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ C+ K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCAGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S G+G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAG 230

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S G+GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S G+G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAG 230

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S G+GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 18/245 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  LI P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHC----FIDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVR 142
            +   LG        + E++  VE + +H+++      +H+DIALLK+        +  R
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSR 115
Query: 143 AVCLTDADKRPVNPK--QQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSV 199
            +          +P+    C  TG+G+      L   +L+   V L +   C+  +    
Sbjct: 116 TIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGIRY 254
           E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  R 
Sbjct: 176 EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRV 234
Query: 255 SHRQP 259
           SH  P
Sbjct: 235 SHFLP 239

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 319 CVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C  TG+G+      L   +L+   V L +   C+  +    E+    LC       + +C
Sbjct: 135 CEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSC 194
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            GDSGGPL CSL+ GR  L GI S+G GCA    P VYT++S +LPWIR
Sbjct: 195 QGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 37/231 (16%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E I  + PWQ +L     RL      CG VL+   WV+TAAHC           +
Sbjct: 1   ILEGRECIPHSQPWQAAL-FQGERL-----ICGGVLVGDRWVLTAAHCKK---------Q 45
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN-----YHHDIALLKLSRPTSARDKGV 141
            ++  LGD      ++ E  I V +   H  ++N     + HDI L++L    +  DK V
Sbjct: 46  KYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDK-V 104
Query: 142 RAVCLTDADKRPVNPK--QQCVATGWGRV-KPKGDLVSKLRQIRVPLHNISVCRDKYGDS 198
           + V L +     + PK  Q+C+ +GWG V  P+ +  + L    V +++ + C   Y   
Sbjct: 105 KPVQLAN-----LCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGK 159
Query: 199 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +    G +C G  +G +  C GDSGGPL C   DG   L GITS+GS  CG
Sbjct: 160 IT--EGMVCAGSSNG-ADTCQGDSGGPLVC---DG--MLQGITSWGSDPCG 202

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 18/149 (12%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPK--QQCVATGWGRV-KPKGDLVSKLRQIRV 342
           L++L    +  DK V+ V L +     + PK  Q+C+ +GWG V  P+ +  + L    V
Sbjct: 91  LIRLQNSANLGDK-VKPVQLAN-----LCPKVGQKCIISGWGTVTSPQENFPNTLNCAEV 144
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
            +++ + C   Y   +    G +C G  +G +  C GDSGGPL C   DG   L GITS+
Sbjct: 145 KIYSQNKCERAYPGKIT--EGMVCAGSSNG-ADTCQGDSGGPLVC---DG--MLQGITSW 196
Query: 403 GSG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
           GS  C K   P VYTK+  Y  WI+K ++
Sbjct: 197 GSDPCGKPEKPGVYTKICRYTTWIKKTMD 225

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 113/247 (45%), Gaps = 44/247 (17%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHC----------IH 76
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC          I 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFIE 56
Query: 77  NDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSR 132
           ND+            +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +
Sbjct: 57  NDLL---------VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKK 107
Query: 133 PTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRV 183
           P +  D  +  VCL D +     +    +   TGWG +K        KG   S L+ + +
Sbjct: 108 PVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNL 165
Query: 184 PLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAG 239
           P+    VC+D     + +     C G    +G  G AC GDSGGP    S  + RWY  G
Sbjct: 166 PIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 223
Query: 240 ITSFGSG 246
           I S+G G
Sbjct: 224 IVSWGEG 230

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 110/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  LI P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHC----FIDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ + L      P      C  TG+G+      L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTIALPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 319 CVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C  TG+G+      L   +L+   V L +   C+  +    E+    LC       + +C
Sbjct: 135 CEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSC 194
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            GDSGGPL CSL+ GR  L GI S+G GCA    P VYT++S +LPWIR
Sbjct: 195 QGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 29/222 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E    + P QVSL   +       H+CG  L++ +WVV+AAHC  + +       
Sbjct: 1   IVGGYECKAYSQPHQVSLNSGY-------HFCGGSLVNENWVVSAAHCYKSRV------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E SE  I   R+  H  + +Y+  +DI L+KLS+P +  +  V+ V
Sbjct: 47  --EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPAT-LNTYVQPV 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  +          C  +GWG         +KL+ + +P+ + S C + Y   +     
Sbjct: 104 ALPSSCAP---AGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMIT--NA 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 159 MFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L+KLS+P +     V+ V L  +          C  +GWG         +KL+ + +P+ 
Sbjct: 87  LIKLSKPATLNTY-VQPVALPSSCAPA---GTMCTVSGWGNTMSSTADKNKLQCLNIPIL 142
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           + S C + Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 143 SYSDCNNSYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
           CA+ G P VY K+  +  W+   +
Sbjct: 196 CAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E    + P QVSL   +       H+CG  L++ +WVV+AAHC  + +       
Sbjct: 1   IVGGYECKAYSQPHQVSLNSGY-------HFCGGSLVNENWVVSAAHCYKSRV------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E SE  I   R+  H  + +Y+  +DI L+KLS+P +     V+ V
Sbjct: 47  --EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTY-VQPV 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  +          C  +GWG         +KL+ + +P+ + S C + Y   +     
Sbjct: 104 ALPTSCAP---AGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMIT--NA 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 159 MFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L+KLS+P +     V+ V L  +          C  +GWG         +KL+ + +P+ 
Sbjct: 87  LIKLSKPATLNTY-VQPVALPTSCAPA---GTMCTVSGWGNTMSSTADSNKLQCLNIPIL 142
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           + S C + Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 143 SYSDCNNSYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
           CA+ G P VY K+  +  W+   +
Sbjct: 196 CAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 29/222 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E    + P QVSL   +       H+CG  L++ +WVV+AAHC    +       
Sbjct: 1   IVGGYECKAYSQPHQVSLNSGY-------HFCGGSLVNENWVVSAAHCYKTRV------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E SE  I   R+  H  + +Y+  +DI L+KLS+P +     V+ V
Sbjct: 47  --EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTY-VQPV 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  +          C  +GWG         +KL+ + +P+ + S C + Y   +     
Sbjct: 104 ALPSSCAP---AGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMIT--NA 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 159 MFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L+KLS+P +     V+ V L  +          C  +GWG         +KL+ + +P+ 
Sbjct: 87  LIKLSKPATLNTY-VQPVALPSSCAPA---GTMCTVSGWGNTMSSTADKNKLQCLNIPIL 142
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           + S C + Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 143 SYSDCNNSYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
           CA+ G P VY K+  +  W+   +
Sbjct: 196 CAEPGNPGVYAKVCIFNNWLTSTM 219

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E    + P QVSL   +       H+CG  L++ +WVV+AAHC  + +       
Sbjct: 1   IVGGYECKPYSQPHQVSLNSGY-------HFCGGSLVNENWVVSAAHCYKSRV------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E SE  I   R+  H  + +Y+  +DI L+KLS+P +     V+ V
Sbjct: 47  --EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTY-VQPV 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  +          C  +GWG         +KL+ + +P+ + S C + Y   +     
Sbjct: 104 ALPTSCAP---AGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMIT--NA 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 159 MFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L+KLS+P +     V+ V L  +          C  +GWG         +KL+ + +P+ 
Sbjct: 87  LIKLSKPATLNTY-VQPVALPTSCAPA---GTMCTVSGWGNTMSSTADSNKLQCLNIPIL 142
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           + S C + Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 143 SYSDCNNSYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
           CA+ G P VY K+  +  W+   +
Sbjct: 196 CAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 34/234 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G +  + + PW V++      L      CG VL+ P+WV+TAAHC  ++       +
Sbjct: 1   IVGGFKCEKNSQPWHVAVYRYTQYL------CGGVLLDPNWVLTAAHCYDDNY------K 48
Query: 87  LW---TAVLGDWDRTEEEKSEVRIP-----VERIRVHEEF--HNYHHDIALLKLSRPTSA 136
           +W     +  D    +       IP     +  +R H  F  ++Y +D+ LL+LS+P   
Sbjct: 49  VWLGKNNLFKDEPSAQHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPADI 108
Query: 137 RDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVPLHNISVCRDKY 195
            D  V+ + L   + +       C+A+GWG + P K      L  + + L     C   +
Sbjct: 109 TDT-VKPITLPTEEPKL---GSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKAH 164
Query: 196 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            + V      LC G++DG    C GDSGGPL C   DG   L GITS+G   CG
Sbjct: 165 IEKVT--DAMLCAGEMDGGKDTCKGDSGGPLIC---DG--VLQGITSWGHTPCG 211

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVPL 344
           LL+LS+P    D  V+ + L   + +       C+A+GWG + P K      L  + + L
Sbjct: 99  LLRLSKPADITDT-VKPITLPTEEPKL---GSTCLASGWGSITPTKFQFTDDLYCVNLKL 154
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG- 403
                C   + + V      LC G++DG    C GDSGGPL C   DG   L GITS+G 
Sbjct: 155 LPNEDCAKAHIEKVT--DAMLCAGEMDGGKDTCKGDSGGPLIC---DG--VLQGITSWGH 207
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQI 429
           + C +   P VYTKL+ +  WI+  +
Sbjct: 208 TPCGEPDMPGVYTKLNKFTSWIKDTM 233

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 36/249 (14%)
Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
           S+ + R++ G+++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +
Sbjct: 44  SYIEGRIVEGQDAEVGLSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPW 99
Query: 81  --SLPIPELWTAVLGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPT 134
             +  + +L   + G   RT  E+   +I + ++I +H  ++   N   DIALLKL RP 
Sbjct: 100 DKNFTVDDLLVRI-GKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPI 158
Query: 135 SARDKGVRAVCLTDADK--RPVNPKQQCVATGWG-----------RVKPKGDLVSKLRQI 181
              D  +  VCL D     + ++   +   TGWG            V+P     S L+ +
Sbjct: 159 ELSDY-IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQP-----SVLQVV 212
Query: 182 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF---SGACIGDSGGPL-QCSLKDGRWYL 237
            +PL    VC  K    + +     C G   G      AC GDSGGP    S  + RWY 
Sbjct: 213 NLPLVERPVC--KASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQ 270
Query: 238 AGITSFGSG 246
            GI S+G G
Sbjct: 271 MGIVSWGEG 279

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 70/163 (42%), Gaps = 25/163 (15%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADK--RPVNPKQQCVATGWG-----------RVKPKG 331
           ALLKL RP    D  +  VCL D     + ++   +   TGWG            V+P  
Sbjct: 150 ALLKLKRPIELSDY-IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQP-- 206
Query: 332 DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS---GACIGDSGGPL-QC 387
              S L+ + +PL    VC  K    + +     C G   G      AC GDSGGP    
Sbjct: 207 ---SVLQVVNLPLVERPVC--KASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMK 261
Query: 388 SLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           S  + RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 262 SPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 304

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GD+GGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GD+GGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E +  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E +  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    D   G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    D   G AC GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKKWIQKVID 255

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  LI P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHC----FIDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ + L      P      C  TG+G+ +    L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTIALPSMYNDP-QFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GD+GGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDAGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 319 CVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C  TG+G+ +    L   +L+   V L +   C+  +    E+    LC       + +C
Sbjct: 135 CEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSC 194
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            GD+GGPL CSL+ GR  L GI S+G GCA    P VYT++S +LPWIR
Sbjct: 195 QGDAGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 242

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 29/222 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E    + P QVSL   +       H+CG  L++ +WVV+AAHC  + +       
Sbjct: 1   IVGGYECKAYSQPHQVSLNSGY-------HFCGGSLVNENWVVSAAHCYKSRV------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E SE  I   R+  H  + +Y+  +DI L+KLS+P +     V+ V
Sbjct: 47  --AVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTY-VQPV 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  +          C  +GWG          KL+ + +P+ + S C + Y   +     
Sbjct: 104 ALPSSCAP---AGTMCTVSGWGNTMSSTADGDKLQCLNIPILSYSDCNNSYPGMIT--NA 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 159 MFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L+KLS+P +     V+ V L  +          C  +GWG          KL+ + +P+ 
Sbjct: 87  LIKLSKPATLNTY-VQPVALPSSCAPA---GTMCTVSGWGNTMSSTADGDKLQCLNIPIL 142
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           + S C + Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 143 SYSDCNNSYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
           CA+ G P VY K+  +  W+   +
Sbjct: 196 CAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GD GGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDXGGPVVCSGK-----LQGIVSWGSG 196

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GD GGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDXGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 22/215 (10%)
Query: 34  IRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLG 93
           I G +  +   Q     L    H+CG  L++ +WVV+AAHC  + +            LG
Sbjct: 1   IVGGYECKAYSQAHQVSLNSGYHFCGGSLVNENWVVSAAHCYKSRV---------EVRLG 51
Query: 94  DWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAVCLTDADK 151
           + +    E SE  I   R+  H  + +Y+  +DI L+KLS+P +  +  V+ V L  +  
Sbjct: 52  EHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPAT-LNTYVQPVALPTSCA 110
Query: 152 RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL 211
                   C  +GWG          KL+ + +P+ + S C D Y   +       C G L
Sbjct: 111 P---AGTMCTVSGWGNTMSSTADSDKLQCLNIPILSYSDCNDSYPGMIT--NAMFCAGYL 165
Query: 212 DGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           +G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 166 EGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L+KLS+P +     V+ V L  +          C  +GWG          KL+ + +P+ 
Sbjct: 87  LIKLSKPATLNTY-VQPVALPTSCAPA---GTMCTVSGWGNTMSSTADSDKLQCLNIPIL 142
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           + S C D Y   +       C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 143 SYSDCNDSYPGMIT--NAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
           CA+ G P VY K+  +  W+   +
Sbjct: 196 CAEPGNPGVYAKVCIFSDWLTSTM 219

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   +IAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 283 SAALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDL 333
           + AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG  
Sbjct: 99  NIALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ- 156
Query: 334 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSL 389
            S L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S 
Sbjct: 157 PSVLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSP 214
Query: 390 KDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            + RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 215 FNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 110/247 (44%), Gaps = 22/247 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ +     PW  ++   H R G + + CG  L+ P WV++A HC        P  E
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLMSPCWVISATHCF----IDYPKKE 55
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSAR----D 138
            +   LG        + E++  VE + +H+++      +H+DIALLK+ R    R     
Sbjct: 56  DYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI-RSKEGRCAQPS 114
Query: 139 KGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGD 197
           + ++ + L      P      C  TG+G+      L   +L+   V L +   C+  +  
Sbjct: 115 RTIQTIALPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-----GVGI 252
             E+    LC       + +C GDSGGPL CSL+ GR  L GI S+G G       GV  
Sbjct: 174 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYT 232
Query: 253 RYSHRQP 259
           R SH  P
Sbjct: 233 RVSHFLP 239

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 319 CVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C  TG+G+      L   +L+   V L +   C+  +    E+    LC       + +C
Sbjct: 135 CEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSC 194
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ 428
            GDSGGPL CSL+ GR  L GI S+G GCA    P VYT++S +LPWIR  
Sbjct: 195 QGDSGGPLVCSLQ-GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 112/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC  DSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEADSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC  DSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEADSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin) Length = 221

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 29/219 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E+   + P+  SLQ+   R     H+CG  LIHPS+V+TAAHC+ +      IP+
Sbjct: 1   IVGGHEAQPHSRPYMASLQM---RGNPGSHFCGGTLIHPSFVLTAAHCLRD------IPQ 51
Query: 87  -LWTAVLGDWDRTEEEKSEVRIPVERIRVHE-EFHNYHHDIALLKLSRPTSARDKGVRAV 144
            L   VLG  +   +E ++    V ++ ++  +  N  +DI L++LS P +     V  V
Sbjct: 52  RLVNVVLGAHNVRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANL-SASVATV 110
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L   D+ PV    QC+A GWGRV         L+++ V +     CR            
Sbjct: 111 QLPQQDQ-PVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTF-FCRPH---------- 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 243
           ++C       +G C GDSGGPL C   DG   + GI SF
Sbjct: 159 NICTFVPRRKAGICFGDSGGPLIC---DG--IIQGIDSF 192

>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin) Length = 221

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L++LS P +     V  V L   D+ PV    QC+A GWGRV         L+++ V + 
Sbjct: 94  LIQLSSPANL-SASVATVQLPQQDQ-PVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVV 151
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS- 404
               CR            ++C       +G C GDSGGPL C   DG   + GI SF   
Sbjct: 152 TF-FCRPH----------NICTFVPRRKAGICFGDSGGPLIC---DG--IIQGIDSFVIW 195
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA   +PD +T+++ Y+ WIR  +
Sbjct: 196 GCATRLFPDFFTRVALYVDWIRSTL 220

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E  + +  +Q SLQ  +       H+CG  LI  +WVV+AAHC  + I       
Sbjct: 1   IVGGYECRKNSASYQASLQSGY-------HFCGGSLISSTWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   ++ +H  ++  N  +DI L+KLS+P S     V  V
Sbjct: 47  --QVRLGEHNIAVNEGTEQFIDSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSY-VSTV 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVK-PKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
            L  +     +   +C+ +GWG +     +    LR + +P+ + S C   Y    ++  
Sbjct: 104 ALPSS---CASSGTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSAYPG--QITS 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              C G ++G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 159 NMFCAGFMEGGKDSCQGDSGGPVVCNGQ-----LQGVVSWGYG 196

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK-PKGDLVSKLRQIRVPL 344
           L+KLS+P S     V  V L  +     +   +C+ +GWG +     +    LR + +P+
Sbjct: 87  LIKLSKPASLNSY-VSTVALPSS---CASSGTRCLVSGWGNLSGSSSNYPDTLRCLDLPI 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + S C   Y    ++     C G ++G   +C GDSGGP+ C+ +     L G+ S+G 
Sbjct: 143 LSSSSCNSAYPG--QITSNMFCAGFMEGGKDSCQGDSGGPVVCNGQ-----LQGVVSWGY 195
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           GCA+   P VYTK+  Y  WI   ++
Sbjct: 196 GCAQRNKPGVYTKVCNYRSWISSTMS 221

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E    + P+    + L  ++G    +CG  L+   +V+TAAHC    +       
Sbjct: 1   IIGGNEISPHSRPYMAYYEFL--KVGGKKMFCGGFLVRDKFVLTAAHCKGRSM------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
             T  LG  +   +E+++  IPV +   H +++  +  +DI LLKL R  + R + VR +
Sbjct: 52  --TVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVR-NAKRTRAVRPL 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L   +   V P  +C   GWG+V P G+    L ++++ +    VC  ++  S      
Sbjct: 109 NLPRRNAH-VKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYN-RAN 166
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
            +C G       +   DSGGPL C     +   AGI S+G
Sbjct: 167 EICVGDSKIKGASFEEDSGGPLVC-----KRAAAGIVSYG 201

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           LLKL R  + R + VR + L   +   V P  +C   GWG+V P G+    L ++++ + 
Sbjct: 92  LLKLVR-NAKRTRAVRPLNLPRRNAH-VKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQ 149
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
              VC  ++  S       +C G       +   DSGGPL C     +   AGI S+G  
Sbjct: 150 KDQVCESQFQSSYN-RANEICVGDSKIKGASFEEDSGGPLVC-----KRAAAGIVSYGQ- 202
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
                 P V+T++  ++ WI+K +
Sbjct: 203 -TDGSAPQVFTRVLSFVSWIKKTM 225

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 112/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G AC  DSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDACEPDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G AC  DSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDACEPDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 112/238 (47%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVSKLRQIRVPLHNISVCR 192
             VCL D +     +    +   TGWG +K        KG   S L+ + +P+    VC+
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PSVLQVVNLPIVERPVCK 174
Query: 193 DKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           D     + +     C G    +G  G A  GDSGGP    S  + RWY  GI S+G G
Sbjct: 175 D--STRIRITDNMFCAGYKPDEGKRGDAAEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 17/159 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKP-------KGDLVS 335
           AL+KL +P +  D  +  VCL D +     +    +   TGWG +K        KG   S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ-PS 158
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKD 391
            L+ + +P+    VC+D     + +     C G    +G  G A  GDSGGP    S  +
Sbjct: 159 VLQVVNLPIVERPVCKD--STRIRITDNMFCAGYKPDEGKRGDAAEGDSGGPFVMKSPFN 216
Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RWY  GI S+G G  + G    YT +     WI+K I+
Sbjct: 217 NRWYQMGIVSWGEGADRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 104/237 (43%), Gaps = 28/237 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF------ 80
           ++ G E  + + PWQV +      +      CG VL+HP WV+TAAHCI N         
Sbjct: 1   IVGGWECEKHSQPWQVLVASRGRAV------CGGVLVHPQWVLTAAHCIRNKSVILLGRH 54
Query: 81  SLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKG 140
           SL  PE    V            ++ +   + R      +  HD+ LL+LS P    D  
Sbjct: 55  SLFHPEDTGQVFQVSHSFPHPLYDMSL--LKNRFLRPGDDSSHDLMLLRLSEPAELTD-- 110
Query: 141 VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS--VCRDKYGDS 198
             AV + D   +       C A+GWG ++P+  L  K  Q  V LH IS  VC   +   
Sbjct: 111 --AVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQC-VDLHVISNDVCAQVHPQK 167
Query: 199 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
           V      LC G+  G    C GDSGGPL C+       L GITS+GS  C +  R S
Sbjct: 168 VTKF--MLCAGRWTGGKSTCSGDSGGPLVCN-----GVLQGITSWGSEPCALPERPS 217

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           LL+LS P    D    AV + D   +       C A+GWG ++P+  L  K  Q  V LH
Sbjct: 99  LLRLSEPAELTD----AVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQC-VDLH 153
Query: 346 NIS--VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
            IS  VC   +   V      LC G+  G    C GDSGGPL C+       L GITS+G
Sbjct: 154 VISNDVCAQVHPQKVTKF--MLCAGRWTGGKSTCSGDSGGPLVCN-----GVLQGITSWG 206
Query: 404 SG-CAKSGYPDVYTKLSFYLPWIRKQI 429
           S  CA    P +YTK+  Y  WI+  I
Sbjct: 207 SEPCALPERPSLYTKVVHYRKWIKDTI 233

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 22/236 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E+    +PWQVS++    R     H+CG  +I+  WVV AAHC+  +      P 
Sbjct: 1   IVGGIEARPYEFPWQVSVR----RKSSDSHFCGGSIINDRWVVCAAHCMQGE-----APA 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
           L + V+G+ D +          V+ I V+E +      +D++++K +   +  D  V  +
Sbjct: 52  LVSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAIT-FDINVGPI 110
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYGDSVELHG 203
           C  D     V  K QC  +GWG +   G    + LR + + +   + C   Y  S  ++ 
Sbjct: 111 CAPDPANDYVYRKSQC--SGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY-TSDTIYD 167
Query: 204 GHLCGGQLDGFS--GACIGDSGGPLQCSLKDGRWYLAGITSFG----SGYCGVGIR 253
             +C     G +   +C GDSGGPL      G + L GI S+G    SGY GV  R
Sbjct: 168 DMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASGYPGVYSR 223

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 297 DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV-SKLRQIRVPLHNISVCRDKYG 355
           D  V  +C  D     V  K QC  +GWG +   G    + LR + + +   + C   Y 
Sbjct: 104 DINVGPICAPDPANDYVYRKSQC--SGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY- 160
Query: 356 DSVELHGGHLCGGQLDGFSG--ACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPD 413
            S  ++   +C     G +   +C GDSGGPL      G + L GI S+G GCA SGYP 
Sbjct: 161 TSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPG 219
Query: 414 VYTKLSFYLPWIRKQI 429
           VY+++ F+  WI   I
Sbjct: 220 VYSRVGFHAGWITDTI 235

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 29/222 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E    + P QVSL   +       H+CG  L++ +WVV+AAHC  + +       
Sbjct: 1   IVGGYECKAYSQPHQVSLNSGY-------HFCGGSLVNENWVVSAAHCYKSRV------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E SE  I   R+  H  + +Y+  +DI L+KLS+ ++  +  V+ V
Sbjct: 47  --EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSK-SATLNTYVQPV 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  +          C  +GWG         +KL+ + +P+ + S C + Y   +     
Sbjct: 104 ALPSSCAP---AGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMIT--NA 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 159 MFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYG 195

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 318 QCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
            C  +GWG         +KL+ + +P+ + S C + Y   +       C G L+G   +C
Sbjct: 115 MCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMIT--NAMFCAGYLEGGKDSC 172
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            GDSGGP+ C+ +     L G+ S+G GCA+ G P VY K+  +  W+   +
Sbjct: 173 QGDSGGPVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C   L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAYGLEGKG 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 101/238 (42%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C   L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAYGLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGC     P VYTK+  Y+ WI++ I
Sbjct: 168 GKGDSCQGDSGGPVVCSGK-----LQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 109/238 (45%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF--SLPI 84
           ++ G+++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +  +  +
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTV 56
Query: 85  PELWTAVLGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKG 140
            +L   + G   RT  E+   +I + ++I +H  ++   N   DIALLKL RP    D  
Sbjct: 57  DDLLVRI-GKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDY- 114
Query: 141 VRAVCLTDADK--RPVNPKQQCVATGWGRVKPKGDLV------SKLRQIRVPLHNISVCR 192
           +  VCL D     + ++   +   TGWG  +            S L+ + +PL    VC 
Sbjct: 115 IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVC- 173
Query: 193 DKYGDSVELHGGHLCGGQLDGF---SGACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
            K    + +     C G   G      AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 174 -KASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEG 230

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADK--RPVNPKQQCVATGWGRVKPKGDLV------SK 336
           ALLKL RP    D  +  VCL D     + ++   +   TGWG  +            S 
Sbjct: 101 ALLKLKRPIELSDY-IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSV 159
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS---GACIGDSGGPL-QCSLKDG 392
           L+ + +PL    VC  K    + +     C G   G      AC GDSGGP    S  + 
Sbjct: 160 LQVVNLPLVERPVC--KASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNN 217
Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 218 RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 109/238 (45%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF--SLPI 84
           ++ G+++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +  +  +
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTV 56
Query: 85  PELWTAVLGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKG 140
            +L   + G   RT  E+   +I + ++I +H  ++   N   DIALLKL RP    D  
Sbjct: 57  DDLLVRI-GKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDY- 114
Query: 141 VRAVCLTDADK--RPVNPKQQCVATGWGRVKPKGDLV------SKLRQIRVPLHNISVCR 192
           +  VCL D     + ++   +   TGWG  +            S L+ + +PL    VC 
Sbjct: 115 IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVC- 173
Query: 193 DKYGDSVELHGGHLCGGQLDGF---SGACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
            K    + +     C G   G      AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 174 -KASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEG 230

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADK--RPVNPKQQCVATGWGRVKPKGDLV------SK 336
           ALLKL RP    D  +  VCL D     + ++   +   TGWG  +            S 
Sbjct: 101 ALLKLKRPIELSDY-IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSV 159
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS---GACIGDSGGPL-QCSLKDG 392
           L+ + +PL    VC  K    + +     C G   G      AC GDSGGP    S  + 
Sbjct: 160 LQVVNLPLVERPVC--KASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNN 217
Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 218 RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++ +G  PWQV L    P+  L    CGA LI   WV+TAAHCI    +     E
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCILYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I VH  ++   N   DIALLKL +P    D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDL------VSKLRQIRVPLHNISVCRD 193
             VCL D       +    +   TGWG ++            S L+ + +P+    VC  
Sbjct: 116 HPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVC-- 173
Query: 194 KYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           K    + +     C G    D   G AC GDSGGP    S  + RWY  GI S+G G
Sbjct: 174 KASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLV------SK 336
           ALLKL +P    D  +  VCL D       +    +   TGWG ++            S 
Sbjct: 101 ALLKLKKPVPFSDY-IHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSV 159
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDG 392
           L+ + +P+    VC  K    + +     C G    D   G AC GDSGGP    S  + 
Sbjct: 160 LQVVNLPIVERPVC--KASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNN 217
Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 218 RWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWIQKVID 255

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++ +G  PWQV L    P+  L    CGA LI   WV+TAAHCI    +     E
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCILYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I VH  ++   N   DIALLKL +P    D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDL------VSKLRQIRVPLHNISVCRD 193
             VCL D       +    +   TGWG ++            S L+ + +P+    VC  
Sbjct: 116 HPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVC-- 173
Query: 194 KYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           K    + +     C G    D   G AC GDSGGP    S  + RWY  GI S G+G
Sbjct: 174 KASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAG 230

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLV------SK 336
           ALLKL +P    D  +  VCL D       +    +   TGWG ++            S 
Sbjct: 101 ALLKLKKPVPFSDY-IHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSV 159
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDG 392
           L+ + +P+    VC  K    + +     C G    D   G AC GDSGGP    S  + 
Sbjct: 160 LQVVNLPIVERPVC--KASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNN 217
Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           RWY  GI S G+GC + G    YT +     WI+K I+
Sbjct: 218 RWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWIQKVID 255

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DACQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           GSGCA+   P  YTKL  Y+ WI++ I
Sbjct: 194 GSGCAQKNKPGFYTKLCNYVSWIKQTI 220

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DACQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 101/238 (42%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   AC GDSGGP+ CS K     L GI S+GSGCA+   P  YTK+  Y+ WI++ I
Sbjct: 168 GGKDACQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DACQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           GSGCA+   P +YTK+  Y+ WI++ I
Sbjct: 194 GSGCAQKNKPGIYTKVCNYVSWIKQTI 220

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DACQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 102/238 (42%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   AC GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDACQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++ +G  PWQV L    P+  L    CGA LI   WV+TAAHCI    +     E
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCILYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I VH  ++   N   DIALLKL +P    D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDL------VSKLRQIRVPLHNISVCRD 193
             VCL D       +    +   TGWG ++            S L+ + +P+    VC  
Sbjct: 116 HPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVC-- 173
Query: 194 KYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDGRWYLAGITSFGSG 246
           K    + +     C G    D   G AC GD+GGP    S  + RWY  GI S+G G
Sbjct: 174 KASTRIRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEG 230

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP--VNPKQQCVATGWGRVKPKGDLV------SK 336
           ALLKL +P    D  +  VCL D       +    +   TGWG ++            S 
Sbjct: 101 ALLKLKKPVPFSDY-IHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSV 159
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLKDG 392
           L+ + +P+    VC  K    + +     C G    D   G AC GD+GGP    S  + 
Sbjct: 160 LQVVNLPIVERPVC--KASTRIRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKSPFNN 217
Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 218 RWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWIQKVID 255

>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 131

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 17/145 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++NG+++I G+WPWQVSLQ    + G   H+CG  LI   WVVTAAHC         +  
Sbjct: 1   IVNGEDAIPGSWPWQVSLQ---DKTGF--HFCGGSLISEDWVVTAAHC--------GVKT 47
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVRAV 144
               V G++D+  +E++   + + ++  + +F+ +   +DI LLKL+ P    +  V AV
Sbjct: 48  SDVVVAGEFDQGSDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSET-VSAV 106
Query: 145 CLTDADKRPVNPKQQCVATGWGRVK 169
            L + D     P   C  TGWG+ K
Sbjct: 107 SLPNVDD-DFPPGTVCATTGWGKTK 130

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 44/238 (18%)
Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           +  +     + PW V++   +       + CG VL+  +WV+TAAHC +ND +     ++
Sbjct: 5   VQSQVDCENSQPWHVAVYRFNK------YQCGGVLLDRNWVLTAAHC-YNDKY-----QV 52
Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-------------NYHHDIALLKLSRPT 134
           W   LG  +  E+E S+    V +   H +F+             +Y +D+ LL+LS+P 
Sbjct: 53  W---LGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPA 109
Query: 135 SARDKGVRAVCLTDADKRPVNPK--QQCVATGWGRVKP-KGDLVSKLRQIRVPLHNISVC 191
              D  V+ + L   +     PK    C+A+GWG   P K      L+ + + L     C
Sbjct: 110 DITDV-VKPITLPTEE-----PKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDC 163
Query: 192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              +   +++    LC G++DG S  C  DSGGPL C   DG   L GITS+G   CG
Sbjct: 164 DKAH--EMKVTDAMLCAGEMDGGSYTCEHDSGGPLIC---DG--ILQGITSWGPEPCG 214

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPK--QQCVATGWGRVKP-KGDLVSKLRQIRV 342
           LL+LS+P    D  V+ + L   +     PK    C+A+GWG   P K      L+ + +
Sbjct: 102 LLRLSKPADITDV-VKPITLPTEE-----PKLGSTCLASGWGSTTPIKFKYPDDLQCVNL 155
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
            L     C   +   +++    LC G++DG S  C  DSGGPL C   DG   L GITS+
Sbjct: 156 KLLPNEDCDKAH--EMKVTDAMLCAGEMDGGSYTCEHDSGGPLIC---DG--ILQGITSW 208
Query: 403 G-SGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   C +   P VYTKL  +  WIR+ +
Sbjct: 209 GPEPCGEPTEPSVYTKLIKFSSWIRETM 236

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E+   + P+   LQ++    G     CG  LI   +V+TAAHC  + I       
Sbjct: 1   IIGGHEAKPHSRPYMAYLQIMDEYSG--SKKCGGFLIREDFVLTAAHCSGSKI------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAV 144
                LG  +  E+EK +  IPV +I  H  +++    +DI LLKL +  + R   V+ +
Sbjct: 52  --QVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKL-KSKAKRSSAVKPL 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L   + + V P   C   GWG++ P G     L+++ + +     C + Y  +      
Sbjct: 109 NLPRRNVK-VKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKC-ESYLKNYFDKAN 166
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
            +C G       +  GDSGGPL C     +   AGI S+G
Sbjct: 167 EICAGDPKIKRASFRGDSGGPLVC-----KKVAAGIVSYG 201

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 273 PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD 332
           P  N  T      LLKL +  + R   V+ + L   + + V P   C   GWG++ P G 
Sbjct: 79  PAYNSKTISNDIMLLKL-KSKAKRSSAVKPLNLPRRNVK-VKPGDVCYVAGWGKLGPMGK 136
Query: 333 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDG 392
               L+++ + +     C + Y  +       +C G       +  GDSGGPL C     
Sbjct: 137 YSDTLQEVELTVQEDQKC-ESYLKNYFDKANEICAGDPKIKRASFRGDSGGPLVC----- 190
Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +   AGI S+G     +  P  +TK+S +L WI+K +
Sbjct: 191 KKVAAGIVSYGQNDGST--PRAFTKVSTFLSWIKKTM 225

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 101/238 (42%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P  YTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  L++  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLLNSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DACQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLLNSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           GSGCA+   P +YTK+  Y+ WI++ I
Sbjct: 194 GSGCAQKNKPGIYTKVCNYVSWIKQTI 220

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GD+GGP+ CS K     L GI S+GSG
Sbjct: 171 DACQGDAGGPVVCSGK-----LQGIVSWGSG 196

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GD+GGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 194 GSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GD+GGP+ CS K     L GI S+GSG
Sbjct: 171 DACQGDAGGPVVCSGK-----LQGIVSWGSG 196

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GD+GGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           GSGCA+   P  YTK+  Y+ WI++ I
Sbjct: 194 GSGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 128

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 30  GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT 89
           G+++I G+WPWQVSLQ    + G   H+CG  LI   WVVTAAHC         +     
Sbjct: 1   GEDAIPGSWPWQVSLQ---DKTGF--HFCGGSLISEDWVVTAAHC--------GVKTSDV 47
Query: 90  AVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVRAVCLT 147
            V G++D+  +E++   + + ++  + +F+ +   +DI LLKL+ P    +  V AVCL 
Sbjct: 48  VVAGEFDQGSDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSET-VSAVCLP 106
Query: 148 DADKRPVNPKQQCVATGWGRVK 169
           + D     P   C  TGWG+ K
Sbjct: 107 NVDD-DFPPGTVCATTGWGKTK 127

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 99/231 (42%), Gaps = 41/231 (17%)
Query: 27  LINGKESIRGAWPWQVSL---QVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLP 83
           +I+G    RG+ PWQV+L     LH         CG VL++  WV+TAAHC  N+     
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLH---------CGGVLVNERWVLTAAHCKMNE----- 46
Query: 84  IPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHH--DIALLKLSRPT--SARDK 139
               +T  LG    T  ++   RI   +   H  +    H  D+ L+KL+     S+  K
Sbjct: 47  ----YTVHLG--SDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVK 100
Query: 140 GVRAVCLTDADKRPVNPKQQCVATGWG-RVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS 198
            VR         R   P   C  +GWG    P     S L  + V L +   C   Y D 
Sbjct: 101 KVR------LPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDL 154
Query: 199 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +E     LC G  D    AC GDSGGPL C     R  L G+ S+G+  CG
Sbjct: 155 LE--NSMLCAGIPDSKKNACNGDSGGPLVC-----RGTLQGLVSWGTFPCG 198

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 315 PKQQCVATGWGRV-KPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF 373
           P   C  +GWG    P     S L  + V L +   C   Y D +E     LC G  D  
Sbjct: 111 PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLE--NSMLCAGIPDSK 168
Query: 374 SGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
             AC GDSGGPL C     R  L G+ S+G+  C +   P VYT++  +  WI   +
Sbjct: 169 KNACNGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 99/231 (42%), Gaps = 41/231 (17%)
Query: 27  LINGKESIRGAWPWQVSL---QVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLP 83
           +I+G    RG+ PWQV+L     LH         CG VL++  WV+TAAHC  N+     
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLH---------CGGVLVNERWVLTAAHCKMNE----- 46
Query: 84  IPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHH--DIALLKLSRPT--SARDK 139
               +T  LG    T  ++   RI   +   H  +    H  D+ L+KL+     S+  K
Sbjct: 47  ----YTVHLG--SDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVK 100
Query: 140 GVRAVCLTDADKRPVNPKQQCVATGWG-RVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS 198
            VR         R   P   C  +GWG    P     S L  + V L +   C   Y D 
Sbjct: 101 KVR------LPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDL 154
Query: 199 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +E     LC G  D    AC GDSGGPL C     R  L G+ S+G+  CG
Sbjct: 155 LE--NSMLCAGIPDSKKNACNGDSGGPLVC-----RGTLQGLVSWGTFPCG 198

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 315 PKQQCVATGWGRV-KPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF 373
           P   C  +GWG    P     S L  + V L +   C   Y D +E     LC G  D  
Sbjct: 111 PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLE--NSMLCAGIPDSK 168
Query: 374 SGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
             AC GDSGGPL C     R  L G+ S+G+  C +   P VYT++  +  WI   +
Sbjct: 169 KNACNGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GDSGGP+ CS K     L GI S+G G
Sbjct: 171 DACQGDSGGPVVCSGK-----LQGIVSWGEG 196

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G GCA+   P VYTK+  Y+ WI++ I
Sbjct: 194 GEGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GDSGGP+ CS K     L GI S+G G
Sbjct: 171 DACQGDSGGPVVCSGK-----LQGIVSWGEG 196

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G GCA+   P +YTK+  Y+ WI++ I
Sbjct: 194 GEGCAQKNKPGIYTKVCNYVSWIKQTI 220

>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 131

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 21/144 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHC--IHNDIFSLPI 84
           ++NG+E++ G+WPWQVSLQ    + G   H+CG  LI+ +WVVTAAHC    +D+     
Sbjct: 1   IVNGEEAVPGSWPWQVSLQ---DKTGF--HFCGGSLINENWVVTAAHCGVTTSDV----- 50
Query: 85  PELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVR 142
                 V G++D+    +   ++ + ++  + ++++   ++DI LLKLS   S   + V 
Sbjct: 51  -----VVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASF-SQTVS 104
Query: 143 AVCLTDADKRPVNPKQQCVATGWG 166
           AVCL  A          CV TGWG
Sbjct: 105 AVCLPSASD-DFAAGTTCVTTGWG 127

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 32/211 (15%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G   G S
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGLEGGDS 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 --CQGDSGGPVVCSGK-----LQGIVSWGSG 194

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 103/238 (43%), Gaps = 43/238 (18%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y    ++     C G   
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGLEG 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G S  C GDSGGP+ CS K     L GI S+GSGCAK+  P VYTK+  Y+ WI++ I
Sbjct: 168 GDS--CQGDSGGPVVCSGK-----LQGIVSWGSGCAKN-KPGVYTKVCNYVSWIKQTI 217

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GD+GGP+ CS K     L GI S+G G
Sbjct: 171 DACQGDAGGPVVCSGK-----LQGIVSWGEG 196

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GD+GGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G GCA+   P  YTK+  Y+ WI++ I
Sbjct: 194 GEGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GD+GGP+ CS K     L GI S+G G
Sbjct: 171 DACQGDAGGPVVCSGK-----LQGIVSWGEG 196

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GD+GGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G GCA+   P VYTK+  Y+ WI++ I
Sbjct: 194 GEGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 58  CGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEE 117
           CG  LI   +V+TAAHC  + I            LG  +  E+E ++  IPV+R   H  
Sbjct: 29  CGGFLIQDDFVLTAAHCWGSSI---------NVTLGAHNIKEQEPTQQFIPVKRPIPHPA 79
Query: 118 FH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV 175
           ++  N+ +DI LL+L R  + R + V+ + L  ++K  V P Q C   GWG+  P G   
Sbjct: 80  YNPKNFSNDIMLLQLER-KAKRTRAVQPLRLP-SNKAQVKPGQTCSVAGWGQTAPLGKHS 137
Query: 176 SKLRQIRVPLHNISVC----RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 231
             L+++++ +     C    R  Y  ++E     LC G  +    +  GDSGGPL C+  
Sbjct: 138 HTLQEVKMTVQEDRKCESDLRHYYDSTIE-----LCVGDPEIKKTSFKGDSGGPLVCNK- 191
Query: 232 DGRWYLAGITSFG 244
                  GI S+G
Sbjct: 192 ----VAQGIVSYG 200

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           LL+L R  + R + V+ + L  ++K  V P Q C   GWG+  P G     L+++++ + 
Sbjct: 91  LLQLER-KAKRTRAVQPLRLP-SNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQ 148
Query: 346 NISVC----RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
               C    R  Y  ++E     LC G  +    +  GDSGGPL C+         GI S
Sbjct: 149 EDRKCESDLRHYYDSTIE-----LCVGDPEIKKTSFKGDSGGPLVCNK-----VAQGIVS 198
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G        P   TK+S ++ WI+K +
Sbjct: 199 YGRNNGMP--PRACTKVSSFVHWIKKTM 224

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCVGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GDSGGP+ CS K     L GI S+G G
Sbjct: 171 DACQGDSGGPVVCSGK-----LQGIVSWGEG 196

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCVGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G GCA+   P  YTK+  Y+ WI++ I
Sbjct: 194 GEGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 58  CGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEE 117
           CG  LI   +V+TAAHC  + I            LG  +  E+E ++  IPV+R   H  
Sbjct: 29  CGGFLIRDDFVLTAAHCWGSSI---------NVTLGAHNIKEQEPTQQFIPVKRPIPHPA 79
Query: 118 FH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV 175
           ++  N+ +DI LL+L R  + R + V+ + L  ++K  V P Q C   GWG+  P G   
Sbjct: 80  YNPKNFSNDIMLLQLER-KAKRTRAVQPLRLP-SNKAQVKPGQTCSVAGWGQTAPLGKHS 137
Query: 176 SKLRQIRVPLHNISVC----RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 231
             L+++++ +     C    R  Y  ++E     LC G  +    +  GDSGGPL C+  
Sbjct: 138 HTLQEVKMTVQEDRKCESDLRHYYDSTIE-----LCVGDPEIKKTSFKGDSGGPLVCNK- 191
Query: 232 DGRWYLAGITSFG 244
                  GI S+G
Sbjct: 192 ----VAQGIVSYG 200

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           LL+L R  + R + V+ + L  ++K  V P Q C   GWG+  P G     L+++++ + 
Sbjct: 91  LLQLER-KAKRTRAVQPLRLP-SNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQ 148
Query: 346 NISVC----RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
               C    R  Y  ++E     LC G  +    +  GDSGGPL C+         GI S
Sbjct: 149 EDRKCESDLRHYYDSTIE-----LCVGDPEIKKTSFKGDSGGPLVCNK-----VAQGIVS 198
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G        P   TK+S ++ WI+K +
Sbjct: 199 YGRNNGMP--PRACTKVSSFVHWIKKTM 224

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 20/206 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G ESI  + P+   L ++  + GL    CG  LI   +V+TAAHC   +I       
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEK-GLRV-ICGGFLISRQFVLTAAHCKGREI------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAV 144
             T +LG  D  + E ++ +I VE+  +HE +++    HDI LLKL +        V  V
Sbjct: 52  --TVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVEL-TPAVNVV 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD-KYGDSVELHG 203
            L       ++P   C A GWG+   +      LR++ + + +   C D +Y +    + 
Sbjct: 109 PLPSPSDF-IHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYE----YK 163
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCS 229
             +C G       A +GDSGGPL C+
Sbjct: 164 FQVCVGSPTTLRAAFMGDSGGPLLCA 189

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 313 VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD-KYGDSVELHGGHLCGGQLD 371
           ++P   C A GWG+   +      LR++ + + +   C D +Y +    +   +C G   
Sbjct: 117 IHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYE----YKFQVCVGSPT 172
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
               A +GDSGGPL C+         GI S+G   AK   P ++T++S Y+PWI   IN
Sbjct: 173 TLRAAFMGDSGGPLLCA-----GVAHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVIN 224

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 101/222 (45%), Gaps = 17/222 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+E I  + P+  SLQ    R G   H CG VL+HP WV+TAAHC+   +  L +  
Sbjct: 1   IIGGREVIPHSRPYMASLQ----RNG--SHLCGGVLVHPKWVLTAAHCLAQRMAQLRL-V 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCL 146
           L    L     T   K+ ++ P      ++      +D+ALL+L        + +R + L
Sbjct: 54  LGLHTLDSPGLTFHIKAAIQHP-----RYKPVPALENDLALLQLDGKVKP-SRTIRPLAL 107
Query: 147 TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHL 206
             + ++ V    +C   GWG     G L   LR++ + + +  +C +    +  L    +
Sbjct: 108 -PSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMV 166
Query: 207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
           C          C GDSGGPL C    GR  LAG+ SF S  C
Sbjct: 167 CLAADSKDQAPCKGDSGGPLVCG--KGR-VLAGVLSFSSRVC 205

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 96/239 (40%), Gaps = 32/239 (13%)
Query: 195 YGDSVELHGGHLCGGQLDG-----FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           Y  S++ +G HLCGG L        +  C+      L+  L        G+ +  S    
Sbjct: 14  YMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQLRLVL--------GLHTLDSPGLT 65
Query: 250 VGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDAD 309
             I+ + + PR             ++ +       ALL+L        + +R + L  + 
Sbjct: 66  FHIKAAIQHPR-------------YKPVPALENDLALLQLDGKVKP-SRTIRPLAL-PSK 110
Query: 310 KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
           ++ V    +C   GWG     G L   LR++ + + +  +C +    +  L    +C   
Sbjct: 111 RQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAA 170
Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRK 427
                  C GDSGGPL C    GR  LAG+ SF S  C     P V T ++ Y+ WIRK
Sbjct: 171 DSKDQAPCKGDSGGPLVCG--KGR-VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRK 226

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G     G  PWQ +L +     G    +CG  ++   +++TAAHC++         +
Sbjct: 1   IVGGYNCKDGEVPWQ-ALLINEENEG----FCGGTILSEFYILTAAHCLYQ-------AK 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
            +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
            L  A   P     +C+ +GWG     G D   +L+ +  P+ + + C   Y   +  + 
Sbjct: 108 SLPTA---PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSN- 163
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 164 -MFCVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGVVSWGDG 200

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVP 343
           A+L+L  P + R   V    L  A   P     +C+ +GWG     G D   +L+ +  P
Sbjct: 90  AVLRLKTPITFR-MNVAPASLPTA---PPATGTKCLISGWGNTASSGADYPDELQCLDAP 145
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           + + + C   Y   +  +    C G L+G   +C GDSGGP+ C+ +     L G+ S+G
Sbjct: 146 VLSQAKCEASYPGKITSN--MFCVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGVVSWG 198
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQI 429
            GCA+   P VYTK+  Y+ WI+  I
Sbjct: 199 DGCAQKNKPGVYTKVYNYVKWIKNTI 224

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++  Y++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLXSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCVGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            AC GDSGGP+ CS K     L GI S+G G
Sbjct: 171 DACQGDSGGPVVCSGK-----LQGIVSWGEG 196

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLXSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   AC GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCVGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G GCA+   P  YTK+  Y+ WI++ I
Sbjct: 194 GEGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 40/237 (16%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G    + + PWQV++           H CG VL+  +WV+TAAHC  +        E
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKE------HICGGVLLDRNWVLTAAHCYVDQY------E 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-------------NYHHDIALLKLSRP 133
           +W   LG     +EE S     V +   H  F+             ++  D+ LL+LS+P
Sbjct: 49  VW---LGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKP 105
Query: 134 TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVPLHNISVCR 192
               D  V+ + L   + +   P  +C+A+GWG + P +      L+ + + L     C 
Sbjct: 106 ADITDV-VKPIALPTKEPK---PGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCA 161
Query: 193 DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             Y   V      LC G++ G    C  DSGGPL C   DG   L G TS+G   CG
Sbjct: 162 KVYLQKVT--DVMLCAGEMGGGKDTCRDDSGGPLIC---DG--ILQGTTSYGPVPCG 211

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVPL 344
           LL+LS+P    D  V+ + L   + +P     +C+A+GWG + P +      L+ + + L
Sbjct: 99  LLRLSKPADITDV-VKPIALPTKEPKP---GSKCLASGWGSITPTRWQKPDDLQCVFITL 154
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C   Y   V      LC G++ G    C  DSGGPL C   DG   L G TS+G 
Sbjct: 155 LPNENCAKVYLQKVT--DVMLCAGEMGGGKDTCRDDSGGPLIC---DG--ILQGTTSYGP 207
Query: 405 -GCAKSGYPDVYTKLSFYLPWIRKQI 429
             C K G P +YT L  +  WI+  +
Sbjct: 208 VPCGKPGVPAIYTNLIKFNSWIKDTM 233

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSAIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 102/238 (42%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSAIITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSYIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 102/238 (42%), Gaps = 40/238 (16%)
Query: 199 VELHGG-HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
           V L+ G H CGG                   SL + +W ++    + SG   + +R    
Sbjct: 16  VSLNSGYHFCGG-------------------SLINSQWVVSAAHCYKSG---IQVRLGED 53
Query: 258 QPRLINGKESIRGAW-----PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
              ++ G E    A      P  N  T      L+KL    S   + V ++ L  +    
Sbjct: 54  NINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---C 109
Query: 313 VNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            +   QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+
Sbjct: 110 ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSYIITSNMFCAGYLE 167
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G   +C GDSGGP+ CS K     L GI S+GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 168 GGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F    Y++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y    ++ 
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KIT 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y    ++    +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPG--KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F    Y++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C  +   S  + 
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADC--EASSSFIIT 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   AC GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDACQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C  +   S  +    +C G L+G   AC GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADC--EASSSFIITDNMVCVGFLEGGKDACQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 101/222 (45%), Gaps = 17/222 (7%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+E I  + P+  SLQ    R G   H CG VL+HP WV+TAAHC+   +  L +  
Sbjct: 1   IIGGREVIPHSRPYMASLQ----RNG--SHLCGGVLVHPKWVLTAAHCLAQRMAQLRL-V 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCL 146
           L    L     T   K+ ++ P      ++      +++ALL+L        + +R + L
Sbjct: 54  LGLHTLDSPGLTFHIKAAIQHP-----RYKPVPALENNLALLQLDGKVKP-SRTIRPLAL 107
Query: 147 TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHL 206
             + ++ V    +C   GWG     G L   LR++ + + +  +C +    +  L    +
Sbjct: 108 -PSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMV 166
Query: 207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
           C          C GDSGGPL C    GR  LAG+ SF S  C
Sbjct: 167 CLAADSKDQAPCKGDSGGPLVCG--KGR-VLAGVLSFSSRVC 205

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 32/239 (13%)
Query: 195 YGDSVELHGGHLCGGQLDG-----FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           Y  S++ +G HLCGG L        +  C+      L+  L        G+ +  S    
Sbjct: 14  YMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQLRLVL--------GLHTLDSPGLT 65
Query: 250 VGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDAD 309
             I+ + + PR             ++ +     + ALL+L        + +R + L  + 
Sbjct: 66  FHIKAAIQHPR-------------YKPVPALENNLALLQLDGKVKP-SRTIRPLAL-PSK 110
Query: 310 KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
           ++ V    +C   GWG     G L   LR++ + + +  +C +    +  L    +C   
Sbjct: 111 RQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAA 170
Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRK 427
                  C GDSGGPL C    GR  LAG+ SF S  C     P V T ++ Y+ WIRK
Sbjct: 171 DSKDQAPCKGDSGGPLVCG--KGR-VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRK 226

>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 152

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD---LVSKLRQIRV 342
           LL+L  P    D    AV + +   +       C A+GWG ++P  D      +++ +++
Sbjct: 12  LLRLQSPAKITD----AVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQL 67
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
            L   + C D + D V      LC G L G    C+GDSGGPL C   +G W   GITS+
Sbjct: 68  TLLQNTFCADAHPDKVT--ESMLCAGYLPGGKDTCMGDSGGPLIC---NGMW--QGITSW 120
Query: 403 G-SGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           G + C  +  P +YTKL FYL WI   I 
Sbjct: 121 GHTPCGSANKPSIYTKLIFYLDWIDDTIT 149

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 56  HWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVH 115
           H CG  L+   +V+TAAHC+ + I            LG  +  E E+++  IPV R   H
Sbjct: 27  HICGGFLVREDFVLTAAHCLGSSI---------NVTLGAHNIMERERTQQVIPVRRPIPH 77
Query: 116 EEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD 173
            ++++    +DI LLKL+R     DK V  + L  +    V P   C   GWGR+     
Sbjct: 78  PDYNDETLANDIMLLKLTRKADITDK-VSPINLPRSLAE-VKPGMMCSVAGWGRLGVNMP 135
Query: 174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDG 233
              KL+++ + + +   C  ++ + +      +C G       +  GDSGGPL C+    
Sbjct: 136 STDKLQEVDLEVQSEEKCIARFKNYIPF--TQICAGDPSKRKNSFSGDSGGPLVCN---- 189
Query: 234 RWYLAGITSFG 244
                GI S+G
Sbjct: 190 -GVAQGIVSYG 199

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           LLKL+R     DK V  + L  +    V P   C   GWGR+        KL+++ + + 
Sbjct: 91  LLKLTRKADITDK-VSPINLPRSLAE-VKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQ 148
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           +   C  ++ + +      +C G       +  GDSGGPL C+         GI S+G  
Sbjct: 149 SEEKCIARFKNYIPF--TQICAGDPSKRKNSFSGDSGGPLVCN-----GVAQGIVSYGRN 201
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
              +  PDVYT++S +L WI   +
Sbjct: 202 DGTT--PDVYTRISSFLSWIHSTM 223

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSRIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   +C GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSRIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 194 GSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSFIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+G G
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGEG 196

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   +C GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSFIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G GCA+   P VYTK+  Y+ WI++ I
Sbjct: 194 GEGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 13  PYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSGI---------QVRLGEDNIN 56
Query: 99  EEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  I   +  VH  +++   ++DI L+KL    S   + V ++ L  +     + 
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASISLPTS---CASA 112
Query: 157 KQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
             QC+ +GWG  K  G      L+ ++ P+  +S    K   S  +     C G L+G  
Sbjct: 113 GTQCLISGWGNTKSSGTSYPDVLKCLKAPI--LSDSSCKSASSWIITSNMFCAGYLEGGK 170
Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C GDSGGP+ CS K     L GI S+GSG
Sbjct: 171 DSCQGDSGGPVVCSGK-----LQGIVSWGSG 196

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + SG   + +R       ++ G E    A      P  N  T    
Sbjct: 28  SLINSQWVVSAAHCYKSG---IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRV 342
             L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ 
Sbjct: 85  IMLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKA 140
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+  +S    K   S  +     C G L+G   +C GDSGGP+ CS K     L GI S+
Sbjct: 141 PI--LSDSSCKSASSWIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSW 193
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           GSGCA+   P VYTK+  Y+ WI++ I
Sbjct: 194 GSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y    ++ 
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KIT 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G  G+C GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKGSCQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 89/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G  G+C GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKGSCQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    PDVYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPDVYTKVCNYVDWIQDTI 220

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 33/231 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +ING++    + PWQ +L V+   L     +C  VL+HP WV++AAHC  N         
Sbjct: 1   IINGEDCSPHSQPWQAAL-VMENEL-----FCSGVLVHPQWVLSAAHCFQNS-------- 46
Query: 87  LWTAVLG--DWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVR 142
            +T  LG    +  +E  S++      +R H E++     +D+ L+KL    S  D  +R
Sbjct: 47  -YTIGLGLHSLEADQEPGSQMVEASLSVR-HPEYNRPLLANDLMLIKLDESVSESDT-IR 103
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           ++ +  A + P      C+ +GWG +   G + + L+ + V + +  VC   Y D +  H
Sbjct: 104 SISI--ASQCPT-AGNSCLVSGWGLLA-NGRMPTVLQCVNVSVVSEEVCSKLY-DPL-YH 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG-VGI 252
               C G       +C GDSGGPL C       YL G+ SFG   CG VG+
Sbjct: 158 PSMFCAGGGQDQKDSCNGDSGGPLIC-----NGYLQGLVSFGKAPCGQVGV 203

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 234 RWYLAGITSFGSGYC-GVGIRY--SHRQP--RLINGKESIRGAWPWQNLITSFLSAALLK 288
           +W L+    F + Y  G+G+    + ++P  +++    S+R     + L+ + L   L+K
Sbjct: 34  QWVLSAAHCFQNSYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDL--MLIK 91
Query: 289 LSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS 348
           L    S  D  +R++ +  A + P      C+ +GWG +   G + + L+ + V + +  
Sbjct: 92  LDESVSESDT-IRSISI--ASQCPT-AGNSCLVSGWGLLA-NGRMPTVLQCVNVSVVSEE 146
Query: 349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CA 407
           VC   Y D +  H    C G       +C GDSGGPL C       YL G+ SFG   C 
Sbjct: 147 VCSKLY-DPL-YHPSMFCAGGGQDQKDSCNGDSGGPLIC-----NGYLQGLVSFGKAPCG 199
Query: 408 KSGYPDVYTKLSFYLPWIRKQI 429
           + G P VYT L  +  WI K +
Sbjct: 200 QVGVPGVYTNLCKFTEWIEKTV 221

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 98/225 (43%), Gaps = 32/225 (14%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I      
Sbjct: 22  KIVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------ 68
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRA 143
                 LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A
Sbjct: 69  ---QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNA 120
Query: 144 VCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVEL 201
              T A      P   QC+ +GWG     G     L Q +  PL   + C   Y   +  
Sbjct: 121 HVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKIT- 179
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 180 -DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 218

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 50  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 106
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 107 IMLIKLSSPVK-----LNAHVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 161
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 162 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 214
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 215 WGYGCALPDNPGVYTKVCNYVDWIQDTI 242

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 24/222 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  +  G +P+ VS+     R G    WCG  L++ + V+TAAHC+     S     
Sbjct: 1   IVGGTSASAGDFPFIVSIS----RNG--GPWCGGSLLNANTVLTAAHCVSGYAQS----- 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPT-SARDKGVRAVC 145
            +    G   RT      +   +  +RVH  +   ++D+A+LKLS    S  + G   + 
Sbjct: 50  GFQIRAGSLSRTS---GGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLA 106
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDSVELHGG 204
            + +D  PV      VA GWG     G      L ++ VP+ + + CR +YG S  +   
Sbjct: 107 ASGSD--PVAGSSATVA-GWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS-AITNQ 162
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C G   G   +C GDSGGP    + D    L G  S+G+G
Sbjct: 163 MFCAGVSSGGKDSCQGDSGGP----IVDSSNTLIGAVSWGNG 200

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 285 ALLKLSRPT-SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRV 342
           A+LKLS    S  + G   +  + +D  PV      VA GWG     G      L ++ V
Sbjct: 86  AILKLSTSIPSGGNIGYARLAASGSD--PVAGSSATVA-GWGATSEGGSSTPVNLLKVTV 142
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+ + + CR +YG S  +     C G   G   +C GDSGGP    + D    L G  S+
Sbjct: 143 PIVSRATCRAQYGTS-AITNQMFCAGVSSGGKDSCQGDSGGP----IVDSSNTLIGAVSW 197
Query: 403 GSGCAKSGYPDVYTKLSFYLPWI 425
           G+GCA+  Y  VY  +     +I
Sbjct: 198 GNGCARPNYSGVYASVGALRSFI 220

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E+   + P+   +Q L  +       CG +L+   +V+TAAHC  + I       
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEK---SRKRCGGILVRKDFVLTAAHCQGSSI------- 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
                LG  +  E+E+++  IPV+R   H  ++  N+ +DI LL+L R  +     VR +
Sbjct: 51  --NVTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLER-KAKWTTAVRPL 107
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  + K  V P Q C   GWG V     L + L+++ + +     C   +  +      
Sbjct: 108 RL-PSSKAQVKPGQLCSVAGWGYVS-MSTLATTLQEVLLTVQKDCQCERLFHGNYS-RAT 164
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY---CGVGIRYSHRQP 259
            +C G          GDSGGPL C  KD      GI S+G+      GV I+ SH  P
Sbjct: 165 EICVGDPKKTQTGFKGDSGGPLVC--KD---VAQGILSYGNKKGTPPGVYIKVSHFLP 217

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 251 GIRYSHRQPRLINGKESI-RGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDAD 309
            I+   R  + I  K  I   A+  +N     +   L + ++ T+A    VR + L  + 
Sbjct: 58  NIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTA----VRPLRL-PSS 112
Query: 310 KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
           K  V P Q C   GWG V     L + L+++ + +     C   +  +       +C G 
Sbjct: 113 KAQVKPGQLCSVAGWGYVS-MSTLATTLQEVLLTVQKDCQCERLFHGNYS-RATEICVGD 170
Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                    GDSGGPL C  KD      GI S+G+   K   P VY K+S +LPWI++ +
Sbjct: 171 PKKTQTGFKGDSGGPLVC--KD---VAQGILSYGN--KKGTPPGVYIKVSHFLPWIKRTM 223
Query: 430 N 430
Sbjct: 224 K 224

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y    ++ 
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KIT 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKSSCQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y    ++    +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPG--KITDNMVCVGFLEGGKSSCQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+A HC  + I       
Sbjct: 1   IVGGYNCEENSVPYQVSLNSGY-------HFCGGSLINEQWVVSAGHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H ++     ++DI L+KLS       + V  +
Sbjct: 47  --QVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAR-VSTI 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
            L  A   P     +C+ +GWG     G D   +L+ +  P+ + + C   Y   +  + 
Sbjct: 104 SLPTA---PPATGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEASYPGKITSN- 159
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              C G L+G   +C GDSGGP+ C+ +     L G+ S+G G
Sbjct: 160 -MFCVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGVVSWGDG 196

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 93/219 (42%), Gaps = 25/219 (11%)
Query: 225 PLQCSLKDGRWYLAG-------ITSFGSGYCG-VGIRYSHRQPRLINGKESIRGAW---- 272
           P Q SL  G  +  G       + S G  Y   + +R       ++ G E    A     
Sbjct: 13  PYQVSLNSGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIR 72
Query: 273 -PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P  +  T      L+KLS       + V  + L  A   P     +C+ +GWG     G
Sbjct: 73  HPQYDRKTLNNDIMLIKLSSRAVINAR-VSTISLPTA---PPATGTKCLISGWGNTASSG 128
Query: 332 -DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
            D   +L+ +  P+ + + C   Y   +  +    C G L+G   +C GDSGGP+ C+ +
Sbjct: 129 ADXPDELQCLDAPVLSQAKCEASYPGKITSN--MFCVGFLEGGKDSCQGDSGGPVVCNGQ 186
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                L G+ S+G GCA+   P VYTK+  Y+ WI+  I
Sbjct: 187 -----LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 220

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y    ++ 
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KIT 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 34/229 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+ +   AWP+ VSLQ+   R G   H+CGA LI P++V++AAHC+     +     
Sbjct: 1   IVGGRRARPHAWPFMVSLQL---RGG---HFCGATLIAPNFVMSAAHCV-----ANVNVR 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRA 143
               VLG  + +  E +     V+RI   E+ +   N  +DI +L+L+   SA       
Sbjct: 50  AVRVVLGAHNLSRREPTRQVFAVQRI--FEDGYDPVNLLNDIVILQLN--GSATINANVQ 105
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           V    A  R +    QC+A GWG +     + S L+++ V +   S+CR           
Sbjct: 106 VAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS--------- 155
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGI 252
            ++C       +G C GDSG PL C+       + GI SF  G C  G+
Sbjct: 156 -NVCTLVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGL 198

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 308 ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCG 367
           A  R +    QC+A GWG +     + S L+++ V +   S+CR            ++C 
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS----------NVCT 159
Query: 368 GQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF-GSGCAKSGYPDVYTKLSFYLPWIR 426
                 +G C GDSG PL C+       + GI SF   GCA   YPD +  ++ ++ WI 
Sbjct: 160 LVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWID 214
Query: 427 KQI 429
             I
Sbjct: 215 SII 217

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 32/225 (14%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I      
Sbjct: 10  KIVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------ 56
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRA 143
                 LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A
Sbjct: 57  ---QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNA 108
Query: 144 VCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVEL 201
              T A      P   QC+ +GWG     G     L Q +  PL   + C   Y    ++
Sbjct: 109 RVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KI 166
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               +C G L+G   +C GD+GGP+ C+ +     L GI S+G G
Sbjct: 167 TDNMVCVGFLEGGKDSCQGDAGGPVVCNGE-----LQGIVSWGYG 206

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 38  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 94
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 95  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 149
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y    ++    +C G L+G   +C GD+GGP+ C+ +     L GI S
Sbjct: 150 APLLPQADCEASYPG--KITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE-----LQGIVS 202
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 203 WGYGCALPDNPGVYTKVCNYVDWIQDTI 230

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 11  IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 56
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 57  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 109
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y    ++ 
Sbjct: 110 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KIT 167
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 168 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 206

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 38  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 94
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 95  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 149
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y    ++    +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 150 APLLPQADCEASYPG--KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 202
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 203 WGYGCALPDNPGVYTKVCNYVDWIQDTI 230

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 42/238 (17%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHW-CGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +I G E  + + PWQV+  V H       H+ CG VL+HP WV+TAAHC+ +D       
Sbjct: 1   IIGGWECEKHSKPWQVA--VYH-----QGHFQCGGVLVHPQWVLTAAHCMSDDY------ 47
Query: 86  ELWTAVLGDWDRTEEEKS-------------EVRIPVERIRVHEEFHNYHHDIALLKLSR 132
           ++W   LG  + +++E +             +  + + + +    + +  HD+ LL+L++
Sbjct: 48  QIW---LGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQ 104
Query: 133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVC 191
           P    D    AV + D   +       C  +GWG +    +  S  L+ + + L +   C
Sbjct: 105 PARITD----AVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKC 160
Query: 192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              Y +  ++    LC    D     C+GDSGG L C   DG     GITS+G   C 
Sbjct: 161 ARAYPE--KMTEFVLCATHRDDSGSICLGDSGGALIC---DG--VFQGITSWGYSECA 211

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPL 344
           LL+L++P    D    AV + D   +       C  +GWG +    +  S  L+ + + L
Sbjct: 99  LLRLAQPARITD----AVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRL 154
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG- 403
            +   C   Y +  ++    LC    D     C+GDSGG L C   DG     GITS+G 
Sbjct: 155 QSNEKCARAYPE--KMTEFVLCATHRDDSGSICLGDSGGALIC---DG--VFQGITSWGY 207
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           S CA      V+TK+  +  WI++ I 
Sbjct: 208 SECADFNDNFVFTKVMPHKKWIKETIE 234

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 30/227 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+ +   AWP+ VSLQ+   R G   H+CGA LI P++V++AAHC+ N         
Sbjct: 1   IVGGRRARPHAWPFMVSLQL---RGG---HFCGATLIAPNFVMSAAHCVANV-----NVR 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVH-EEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
               VLG  + +  E +     V+RI  +  +  N  +DI +L+L+   SA       V 
Sbjct: 50  AVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLN--GSATINANVQVA 107
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
              A  R +    QC+A GWG +     + S L+++ V +   S+CR            +
Sbjct: 108 QLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS----------N 156
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGI 252
           +C       +G C GDSG PL C+       + GI SF  G C  G+
Sbjct: 157 VCTLVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGL 198

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 308 ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCG 367
           A  R +    QC+A GWG +     + S L+++ V +   S+CR            ++C 
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS----------NVCT 159
Query: 368 GQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF-GSGCAKSGYPDVYTKLSFYLPWIR 426
                 +G C GDSG PL C+       + GI SF   GCA   YPD +  ++ ++ WI 
Sbjct: 160 LVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWID 214
Query: 427 KQI 429
             I
Sbjct: 215 SII 217

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 24/221 (10%)
Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G  +  G +P+ VS+     R G    WCG  L++ + V+TAAHC+     S      
Sbjct: 2   VGGTSASAGDFPFIVSIS----RNG--GPWCGGSLLNANTVLTAAHCVSGYAQS-----G 50
Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPT-SARDKGVRAVCL 146
           +    G   RT      +   +  +RVH  +   ++D+A+LKLS    S  + G   +  
Sbjct: 51  FQIRAGSLSRTS---GGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAA 107
Query: 147 TDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           + +D  PV      VA GWG     G      L ++ VP+ + + CR +YG S  +    
Sbjct: 108 SGSD--PVAGSSATVA-GWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS-AITNQM 163
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            C G   G   +C GDSGGP    + D    L G  S+G+G
Sbjct: 164 FCAGVSSGGKDSCQGDSGGP----IVDSSNTLIGAVSWGNG 200

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 285 ALLKLSRPT-SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRV 342
           A+LKLS    S  + G   +  + +D  PV      VA GWG     G      L ++ V
Sbjct: 86  AILKLSTSIPSGGNIGYARLAASGSD--PVAGSSATVA-GWGATSEGGSSTPVNLLKVTV 142
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+ + + CR +YG S  +     C G   G   +C GDSGGP    + D    L G  S+
Sbjct: 143 PIVSRATCRAQYGTS-AITNQMFCAGVSSGGKDSCQGDSGGP----IVDSSNTLIGAVSW 197
Query: 403 GSGCAKSGYPDVYTKLSFYLPWI 425
           G+GCA+  Y  VY  +     +I
Sbjct: 198 GNGCARPNYSGVYASVGALRSFI 220

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 97/224 (43%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y   +   
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKIT-- 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDHKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 19/223 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G  +  G +PWQ+S Q    + G   H CGA L+  +  ++A+HC+        +P 
Sbjct: 1   VIGGTNASPGEFPWQLSQQ---RQSGSWSHSCGASLLSSTSALSASHCVDG-----VLPN 52
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVR 142
               + G W +++   ++    V+   +HE +     +Y +DIA+L L+  TS    G  
Sbjct: 53  NIRVIAGLWQQSDTSGTQTA-NVDSYTMHENYGAGTASYSNDIAILHLA--TSISLGGNI 109
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD--SVE 200
              +  A+         CV +GWGR     +L   L++  +P+   + C           
Sbjct: 110 QAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGAN 169
Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 243
           +   H+C     G +GAC GDSGGPL C   DG   + G+TS+
Sbjct: 170 IWDNHICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVGVTSW 210

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 279 TSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLR 338
           T+  S  +  L   TS    G     +  A+         CV +GWGR     +L   L+
Sbjct: 87  TASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQ 146
Query: 339 QIRVPLHNISVCRDKYGD--SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           +  +P+   + C           +   H+C     G +GAC GDSGGPL C   DG   +
Sbjct: 147 KSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNC--PDGGTRV 204
Query: 397 AGITSF----GSGCAKSGYPDVYTKLSFYLPWI 425
            G+TS+    G G     YP VYT++S YL WI
Sbjct: 205 VGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 29/222 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G E  + +   QVSL   +       H+CG  L+   WVV+AAHC            
Sbjct: 1   IVGGYECTKHSQAHQVSLNSGY-------HFCGGSLVSKDWVVSAAHCY---------KS 44
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
           +    LG+      E +E  I    +  H  +  +N ++DI L+KL++P +  ++ V AV
Sbjct: 45  VLRVRLGEHHIRVNEGTEQYISSSSVIRHPNYSSYNINNDIMLIKLTKPAT-LNQYVHAV 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L             C  +GWG          KL+ + +P+ + + C + Y   +     
Sbjct: 104 ALP---TECAADATMCTVSGWGNTMSSVADGDKLQCLSLPILSHADCANSYPGMITQ--S 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C G L+G   +C GDSGGP+ C        L G+ S+G G
Sbjct: 159 MFCAGYLEGGKDSCQGDSGGPVVC-----NGVLQGVVSWGYG 195

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           L+KL++P +  ++ V AV L             C  +GWG          KL+ + +P+ 
Sbjct: 87  LIKLTKPAT-LNQYVHAVALP---TECAADATMCTVSGWGNTMSSVADGDKLQCLSLPIL 142
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 405
           + + C + Y   +       C G L+G   +C GDSGGP+ C+       L G+ S+G G
Sbjct: 143 SHADCANSYPGMITQ--SMFCAGYLEGGKDSCQGDSGGPVVCN-----GVLQGVVSWGYG 195
Query: 406 CAKSGYPDVYTKLSFYLPWIRKQI 429
           CA+  +P VY K+     W+R  +
Sbjct: 196 CAERDHPGVYAKVCVLSGWVRDTM 219

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 30/227 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+ +   AWP+ VSLQ+   R G   H+CGA LI P++V++AAHC+ N         
Sbjct: 1   IVGGRRARPHAWPFMVSLQL---RGG---HFCGATLIAPNFVMSAAHCVANV-----NVR 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVH-EEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
               VLG  + +  E +     V+RI  +  +  N  +DI +L+L+   SA       V 
Sbjct: 50  AVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLN--GSATINANVQVA 107
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
              A  R +    QC+A GWG +     + S L+++ V +   S+CR            +
Sbjct: 108 QLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS----------N 156
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGI 252
           +C       +G C GDSG PL C+       + GI SF  G C  G+
Sbjct: 157 VCTLVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGL 198

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 308 ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCG 367
           A  R +    QC+A GWG +     + S L+++ V +   S+CR            ++C 
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS----------NVCT 159
Query: 368 GQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF-GSGCAKSGYPDVYTKLSFYLPWIR 426
                 +G C GDSG PL C+       + GI SF   GCA   YPD +  ++ ++ WI 
Sbjct: 160 LVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWID 214
Query: 427 KQI 429
             I
Sbjct: 215 SII 217

>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl 101, 146 Length = 218

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 36/247 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+ +   AWP+ VSLQ+         H+CGA LI P++V++AAHC+     +     
Sbjct: 1   IVGGRRARPHAWPFMVSLQLAGG------HFCGATLIAPNFVMSAAHCV-----ANVNVR 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRA 143
               VLG  + +  E +     V+RI   E+ +   N  +DI +L+L+   SA       
Sbjct: 50  AVRVVLGAHNLSRREPTRQVFAVQRI--FEDGYDPVNLLNDIVILQLN--GSATINANVQ 105
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           V    A  R +    QC+A GWG +     + S L+++ V +   S+CR           
Sbjct: 106 VAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS--------- 155
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQP--RL 261
            ++C       +G C GDSG PL C+       + GI SF  G C  G+      P  + 
Sbjct: 156 -NVCTLVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQF 209
Query: 262 INGKESI 268
           +N  +SI
Sbjct: 210 VNWIDSI 216

>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl 101, 146 Length = 218

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 308 ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCG 367
           A  R +    QC+A GWG +     + S L+++ V +   S+CR            ++C 
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS----------NVCT 159
Query: 368 GQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF-GSGCAKSGYPDVYTKLSFYLPWIR 426
                 +G C GDSG PL C+       + GI SF   GCA   YPD +  ++ ++ WI 
Sbjct: 160 LVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWID 214
Query: 427 KQI 429
             I
Sbjct: 215 SII 217

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +ING E+  G +P+Q  L +       +  WCG  LI   W++TAAHC+H+ +    +  
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRV--WCGGSLIDNKWILTAAHCVHDAVSV--VVY 56
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
           L +AV        + + E  +  ERI  H  F+   Y +D+AL+K+  P       ++ +
Sbjct: 57  LGSAV--------QYEGEAVVNSERIISHSMFNPDTYLNDVALIKI--PHVEYTDNIQPI 106
Query: 145 CLTDADKRPVNPKQQCV---ATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
            L   ++  +N K + +    +GWG  +   D V       + + N   C  +Y   + +
Sbjct: 107 RLPSGEE--LNNKFENIWATVSGWG--QSNTDTVILQYTYNLVIDN-DRCAQEYPPGIIV 161
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
               +CG   DG S  C GDSGGP   S K+    L G+ SF SG
Sbjct: 162 E-STICGDTSDGKS-PCFGDSGGPFVLSDKN---LLIGVVSFVSG 201

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 365 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF--GSGCAKSGYPDVYTKLSFYL 422
           +CG   DG S  C GDSGGP   S K+    L G+ SF  G+GC +SG P  +++++ Y+
Sbjct: 165 ICGDTSDGKS-PCFGDSGGPFVLSDKN---LLIGVVSFVSGAGC-ESGKPVGFSRVTSYM 219
Query: 423 PWIRKQINI 431
            WI++   I
Sbjct: 220 DWIQQNTGI 228

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI   WVV+AAHC    I       
Sbjct: 1   IVGGYTCEENSLPYQVSLNSGY-------HFCGGSLISEQWVVSAAHCYKTRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H +++     +DI L+KLS P     + V  +
Sbjct: 47  --QVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINAR-VSTI 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
            L  A   P     +C+ +GWG     G D   +L+ +  P+   + C+  Y   +    
Sbjct: 104 SLPTA---PPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKIT--N 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              C G L+G   +C  D+GGP+ C+ +     L G+ S+G G
Sbjct: 159 SMFCVGFLEGGKDSCQRDAGGPVVCNGQ-----LQGVVSWGHG 196

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 25/219 (11%)
Query: 225 PLQCSLKDGRWYLAG-------ITSFGSGY-CGVGIRYSHRQPRLINGKESIRGAW---- 272
           P Q SL  G  +  G       + S    Y   + +R      +++ G E    A     
Sbjct: 13  PYQVSLNSGYHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKIIR 72
Query: 273 -PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P  N  T      L+KLS P     + V  + L  A   P     +C+ +GWG     G
Sbjct: 73  HPKYNRDTLDNDIMLIKLSSPAVINAR-VSTISLPTA---PPAAGTECLISGWGNTLSFG 128
Query: 332 -DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
            D   +L+ +  P+   + C+  Y   +       C G L+G   +C  D+GGP+ C+ +
Sbjct: 129 ADYPDELKCLDAPVLTQAECKASYPGKIT--NSMFCVGFLEGGKDSCQRDAGGPVVCNGQ 186
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                L G+ S+G GCA    P VYTK+  Y+ WI+  I
Sbjct: 187 -----LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E+   + P+   +Q L  +       CG +L+   +V+TAAHC  + I       
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEK---SRKRCGGILVRKDFVLTAAHCQGSSI------- 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
                LG  +  E+E+++  IPV+R   H  ++  N+ ++I LL+L R  +     VR +
Sbjct: 51  --NVTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNNIMLLQLER-KAKWTTAVRPL 107
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  + K  V P Q C   GWG V     L + L+++ + +     C   +  +      
Sbjct: 108 RL-PSSKAQVKPGQLCSVAGWGYVS-MSTLATTLQEVLLTVQKDCQCERLFHGNYS-RAT 164
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY---CGVGIRYSHRQP 259
            +C G          GDSGGPL C  KD      GI S+G+      GV I+ SH  P
Sbjct: 165 EICVGDPKKTQTGFKGDSGGPLVC--KD---VAQGILSYGNKKGTPPGVYIKVSHFLP 217

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 251 GIRYSHRQPRLINGKESI-RGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDAD 309
            I+   R  + I  K  I   A+  +N   + +   L + ++ T+A    VR + L  + 
Sbjct: 58  NIKEQERTQQFIPVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTA----VRPLRL-PSS 112
Query: 310 KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
           K  V P Q C   GWG V     L + L+++ + +     C   +  +       +C G 
Sbjct: 113 KAQVKPGQLCSVAGWGYVS-MSTLATTLQEVLLTVQKDCQCERLFHGNYS-RATEICVGD 170
Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                    GDSGGPL C  KD      GI S+G+   K   P VY K+S +LPWI++ +
Sbjct: 171 PKKTQTGFKGDSGGPLVC--KD---VAQGILSYGN--KKGTPPGVYIKVSHFLPWIKRTM 223
Query: 430 N 430
Sbjct: 224 K 224

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+A HC  + I       
Sbjct: 1   IVGGYNCEENSVPYQVSLNSGY-------HFCGGSLINEQWVVSAGHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H ++     ++DI L+KLS   +  +  V  +
Sbjct: 47  --QVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSS-RAVINAHVSTI 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
            L  A   P     +C+ +GWG     G D   +L+ +  P+ + + C   Y   +  + 
Sbjct: 104 SLPTA---PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSN- 159
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              C G L+G   +C GD+GGP+ C+ +     L G+ S+G G
Sbjct: 160 -MFCVGFLEGGKDSCQGDAGGPVVCNGQ-----LQGVVSWGDG 196

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 25/219 (11%)
Query: 225 PLQCSLKDGRWYLAG-------ITSFGSGYCG-VGIRYSHRQPRLINGKESIRGAW---- 272
           P Q SL  G  +  G       + S G  Y   + +R       ++ G E    A     
Sbjct: 13  PYQVSLNSGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIR 72
Query: 273 -PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P  +  T      L+KLS   +  +  V  + L  A   P     +C+ +GWG     G
Sbjct: 73  HPQYDRKTLNNDIMLIKLSS-RAVINAHVSTISLPTA---PPATGTKCLISGWGNTASSG 128
Query: 332 -DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
            D   +L+ +  P+ + + C   Y   +  +    C G L+G   +C GD+GGP+ C+ +
Sbjct: 129 ADYPDELQCLDAPVLSQAKCEASYPGKITSN--MFCVGFLEGGKDSCQGDAGGPVVCNGQ 186
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                L G+ S+G GCA+   P VYTK+  Y+ WI+  I
Sbjct: 187 -----LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 220

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 97/224 (43%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y   +   
Sbjct: 100 VATIALPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKIT-- 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATIALPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 97/224 (43%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y   +   
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKIT-- 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 98/224 (43%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y    ++ 
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KIT 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GD+GGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDAGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GD+GGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDAGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 24/222 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  +  G +P+ VS+     R G    WCG  L++ + V+TAAHC+     S     
Sbjct: 1   IVGGTSASAGDFPFIVSIS----RNG--GPWCGGSLLNANTVLTAAHCVSGYAQS----- 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPT-SARDKGVRAVC 145
            +    G   RT      +   +  +RVH  +   ++D+A+LKLS    S  + G   + 
Sbjct: 50  GFQIRAGSLSRTS---GGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLA 106
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDSVELHGG 204
            + +D  PV      VA GWG     G      L ++ VP+ + + CR +YG S  +   
Sbjct: 107 ASGSD--PVAGSSATVA-GWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS-AITNQ 162
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             C G   G   +C GD GGP    + D    L G  S+G+G
Sbjct: 163 MFCAGVSSGGKDSCQGDXGGP----IVDSSNTLIGAVSWGNG 200

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 285 ALLKLSRPT-SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRV 342
           A+LKLS    S  + G   +  + +D  PV      VA GWG     G      L ++ V
Sbjct: 86  AILKLSTSIPSGGNIGYARLAASGSD--PVAGSSATVA-GWGATSEGGSSTPVNLLKVTV 142
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P+ + + CR +YG S  +     C G   G   +C GD GGP+     D    L G  S+
Sbjct: 143 PIVSRATCRAQYGTS-AITNQMFCAGVSSGGKDSCQGDXGGPI----VDSSNTLIGAVSW 197
Query: 403 GSGCAKSGYPDVYTKLSFYLPWI 425
           G+GCA+  Y  VY  +     +I
Sbjct: 198 GNGCARPNYSGVYASVGALRSFI 220

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 94/212 (44%), Gaps = 32/212 (15%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 21  PYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI---------QVRLGEHNIN 64
Query: 99  EEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  +   +I  H  F     ++DI L+KLS P       + A   T A      P
Sbjct: 65  VLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNARVATVALPSSCAP 119
Query: 157 K-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF 214
              QC+ +GWG     G     L Q +  PL   + C   Y    ++    +C G L+G 
Sbjct: 120 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KITDNMVCVGFLEGG 177
Query: 215 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 178 KDSCQGDSGGPVVCNGE-----LQGIVSWGYG 204

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 36  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 92
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 93  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 147
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y    ++    +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 148 APLLPQADCEASYPG--KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 200
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 201 WGYGCALPDNPGVYTKVCNYVDWIQDTI 228

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL           H+CG  LI   WVV+AAHC    I       
Sbjct: 1   IVGGYTCEENSLPYQVSLNS-------GSHFCGGSLISEQWVVSAAHCYKTRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H +++     +DI L+KLS P     + V  +
Sbjct: 47  --QVRLGEHNIKVLEGNEQFINAVKIIRHPKYNRDTLDNDIMLIKLSSPAVINAR-VSTI 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
            L  A   P     +C+ +GWG     G D   +L+ +  P+   + C+  Y   +    
Sbjct: 104 SLPTA---PPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKIT--N 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              C G L+G   +C  DSGGP+ C+ +     L G+ S+G G
Sbjct: 159 SMFCVGFLEGGKDSCQRDSGGPVVCNGQ-----LQGVVSWGHG 196

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 91/219 (41%), Gaps = 25/219 (11%)
Query: 225 PLQCSLKDGRWYLAG-------ITSFGSGY-CGVGIRYSHRQPRLINGKESIRGAW---- 272
           P Q SL  G  +  G       + S    Y   + +R      +++ G E    A     
Sbjct: 13  PYQVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAVKIIR 72
Query: 273 -PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P  N  T      L+KLS P     + V  + L  A   P     +C+ +GWG     G
Sbjct: 73  HPKYNRDTLDNDIMLIKLSSPAVINAR-VSTISLPTA---PPAAGTECLISGWGNTLSFG 128
Query: 332 -DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
            D   +L+ +  P+   + C+  Y   +       C G L+G   +C  DSGGP+ C+ +
Sbjct: 129 ADYPDELKCLDAPVLTQAECKASYPGKIT--NSMFCVGFLEGGKDSCQRDSGGPVVCNGQ 186
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                L G+ S+G GCA    P VYTK+  Y+ WI+  I
Sbjct: 187 -----LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 95/212 (44%), Gaps = 32/212 (15%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 21  PYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI---------QVRLGEHNIN 64
Query: 99  EEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  +   +I  H  F     ++DI L+KLS P       + A   T A      P
Sbjct: 65  VLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNARVATVALPSSCAP 119
Query: 157 K-QQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF 214
              QC+ +GWG     G +    L+ +  PL   + C   Y    ++    +C G L+G 
Sbjct: 120 AGTQCLISGWGNTLSSGVNEPDLLKCLDAPLLPQADCEASYPG--KITDNMVCVGFLEGG 177
Query: 215 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 178 KDSCQGDSGGPVVCNGE-----LQGIVSWGYG 204

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 36  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 92
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKG-DLVSKLRQIR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G +    L+ + 
Sbjct: 93  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLKCLD 147
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 148 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 200
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 201 WGYGCALPDNPGVYTKVCNYVDWIQDTI 228

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 115/253 (45%), Gaps = 31/253 (12%)
Query: 17  GIRYSHRQPRLINGK--ESIRGAWPWQVSLQVLH--PRLGLMPHWCGAVLIHPSWVVTAA 72
           GIR        I G+  E+  G +PW V++   +  P  G     CG  LI PS V+T A
Sbjct: 119 GIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGA 178
Query: 73  HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIP-----VERIRVHEEFH--NYHHDI 125
           HC+++   +L   ++     G+WD   E++   R+P     + ++ +H  F+     +D+
Sbjct: 179 HCVNSYQSNLDAIKIRA---GEWDTLTEKE---RLPYQERKIRQVIIHSNFNPKTVVNDV 232
Query: 126 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK--PKGDLVSKLRQIRV 183
           ALL L RP    D  +  +CL    +  +    +C A+GWG+ +   +    + L++I++
Sbjct: 233 ALLLLDRPLVQADN-IGTICLPQQSQ--IFDSTECFASGWGKKEFGSRHRYSNILKKIQL 289
Query: 184 PLHNISVCR-----DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC--SLKDGRWY 236
           P  +   C+      + G    L    +C G   G    C GD G PL C       R+ 
Sbjct: 290 PTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYM 348
Query: 237 LAGITSFGSGYCG 249
             GI ++G G CG
Sbjct: 349 QMGIVAWGIG-CG 360

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 13/163 (7%)
Query: 276 NLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK--PKGDL 333
           N  T     ALL L RP    D  +  +CL    +  +    +C A+GWG+ +   +   
Sbjct: 224 NPKTVVNDVALLLLDRPLVQADN-IGTICLPQQSQ--IFDSTECFASGWGKKEFGSRHRY 280
Query: 334 VSKLRQIRVPLHNISVCR-----DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCS 388
            + L++I++P  +   C+      + G    L    +C G   G    C GD G PL C 
Sbjct: 281 SNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCP 339
Query: 389 --LKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                 R+   GI ++G GC     P VY  ++ +  WI +++
Sbjct: 340 DPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEM 382

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 92/213 (43%), Gaps = 27/213 (12%)
Query: 48  HPRLGLM---PHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSE 104
           HP L  +    ++CG  LI+  WVVTAAHC   + F + +      VL + ++T   K +
Sbjct: 12  HPFLAFLYSHGYFCGLTLINQEWVVTAAHCDSTN-FQMQLGVHSKKVLNEDEQTRNPKEK 70
Query: 105 VRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQ---CV 161
              P + +           DI L+KL +P S   K +  + L      P NP      C 
Sbjct: 71  FICPNKNMS-----EVLDKDIMLIKLDKPIS-NSKHIAPLSL------PSNPPSVGSVCR 118
Query: 162 ATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIG 220
             GWG +    +    +     + L +  VC+  Y          LC G L+G    C+G
Sbjct: 119 IMGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPA--KTTLCAGVLEGGKDTCVG 176
Query: 221 DSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR 253
           DSGGPL C+ +       GI S+G+  CG G +
Sbjct: 177 DSGGPLICNGQ-----FQGIVSYGAHSCGQGPK 204

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQ---CVATGWGRVKPKGDLVSKLRQ-IR 341
           L+KL +P S   K +  + L      P NP      C   GWG +    +    +     
Sbjct: 88  LIKLDKPIS-NSKHIAPLSL------PSNPPSVGSVCRIMGWGSITIPNETYPDVPYCAN 140
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
           + L +  VC+  Y          LC G L+G    C+GDSGGPL C+ +       GI S
Sbjct: 141 INLVDYEVCQGAYNGLPA--KTTLCAGVLEGGKDTCVGDSGGPLICNGQ-----FQGIVS 193
Query: 402 FGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G+  C +   P +YT +  Y  WI++ I
Sbjct: 194 YGAHSCGQGPKPGIYTNVFDYTDWIQRNI 222

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL           H+CG  LI   WVV+AAHC    I       
Sbjct: 1   IVGGYTCEENSLPYQVSLNS-------GSHFCGGSLISEQWVVSAAHCYKTRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H +++     +DI L+KLS P     + V  +
Sbjct: 47  --QVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINAR-VSTI 103
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
            L  A   P     +C+ +GWG     G D   +L+ +  P+   + C+  Y   +    
Sbjct: 104 SLPTA---PPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKIT--N 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              C G L+G   +C  D+GGP+ C+ +     L G+ S+G G
Sbjct: 159 SMFCVGFLEGGKDSCQRDAGGPVVCNGQ-----LQGVVSWGHG 196

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 25/219 (11%)
Query: 225 PLQCSLKDGRWYLAG-------ITSFGSGY-CGVGIRYSHRQPRLINGKESIRGAW---- 272
           P Q SL  G  +  G       + S    Y   + +R      +++ G E    A     
Sbjct: 13  PYQVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKIIR 72
Query: 273 -PWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P  N  T      L+KLS P     + V  + L  A   P     +C+ +GWG     G
Sbjct: 73  HPKYNRDTLDNDIMLIKLSSPAVINAR-VSTISLPTA---PPAAGTECLISGWGNTLSFG 128
Query: 332 -DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
            D   +L+ +  P+   + C+  Y   +       C G L+G   +C  D+GGP+ C+ +
Sbjct: 129 ADYPDELKCLDAPVLTQAECKASYPGKIT--NSMFCVGFLEGGKDSCQRDAGGPVVCNGQ 186
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                L G+ S+G GCA    P VYTK+  Y+ WI+  I
Sbjct: 187 -----LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 97/224 (43%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     +++I L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y   +   
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKIT-- 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T   +
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNN 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 96/224 (42%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y   +   
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKIT-- 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI  +G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVEWGYG 196

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI  
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVE 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 96/224 (42%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y   +   
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKIT-- 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI  +G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVKWGYG 196

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI  
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVK 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 96/224 (42%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  +   +I  H  F     ++DI L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y   +   
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKIT-- 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GD GGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDCGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GD GGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDCGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone Length = 226

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 102/241 (42%), Gaps = 32/241 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E    + P+   L+++         +CG  LI  ++V+TAAHC    I       
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVTSNGP--SKFCGGFLIRRNFVLTAAHCAGRSI------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
             T  LG  + TEEE +  ++ V +   H +++    HHDI LLKL    S         
Sbjct: 52  --TVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASL--TLAVGT 107
Query: 145 CLTDADKRPVNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
               + K  V P + C   GWGR   +KP  D    L+++++ L +   C   + D    
Sbjct: 108 LPFPSQKNFVPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD-- 161
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC---GVGIRYSHRQ 258
           H   LC G       A  GDSGGPL C+         GI S+G        V  R SH Q
Sbjct: 162 HNLQLCVGNPRKTKSAFKGDSGGPLLCA-----GAAQGIVSYGRSDAKPPAVFTRISHYQ 216
Query: 259 P 259
           P
Sbjct: 217 P 217

>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone Length = 226

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 308 ADKRPVNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 364
           + K  V P + C   GWGR   +KP  D    L+++++ L +   C   + D    H   
Sbjct: 112 SQKNFVPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD--HNLQ 165
Query: 365 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW 424
           LC G       A  GDSGGPL C+         GI S+G   AK   P V+T++S Y PW
Sbjct: 166 LCVGNPRKTKSAFKGDSGGPLLCA-----GAAQGIVSYGRSDAKP--PAVFTRISHYQPW 218
Query: 425 IRK 427
           I +
Sbjct: 219 INQ 221

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 97/224 (43%), Gaps = 32/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E  E  +   +I  H  F     +++I L+KLS P       + A 
Sbjct: 47  --QVRLGEHNINVLEGDEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVK-----LNAR 99
Query: 145 CLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELH 202
             T A      P   QC+ +GWG     G     L Q +  PL   + C   Y    ++ 
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KIT 157
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              +C G L+G   +C GDSGGP+ C+ +     L GI S+G G
Sbjct: 158 DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T   +
Sbjct: 28  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGDEQFVNAAKIIKHPNFDRKTLNNN 84
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 85  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 139
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C GDSGGP+ C+ +     L GI S
Sbjct: 140 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVS 192
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 193 WGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase Length = 218

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 30/227 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+ +   AWP+ VSLQ+   R G   H+CGA LI P++V++AAHC+ N         
Sbjct: 1   IVGGRRARPHAWPFMVSLQL---RGG---HFCGATLIAPNFVMSAAHCVANVNVRAV--- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVH-EEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
               VLG  + +  E +     V+RI  +  +  N  +DI +L+L+   SA       V 
Sbjct: 52  --RVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLN--GSATINANVQVA 107
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
              A  R +    QC+A GWG +     + S L+++ V +   S+CR            +
Sbjct: 108 QLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS----------N 156
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGI 252
           +C       +G C GD G PL C+       + GI SF  G C  G+
Sbjct: 157 VCTLVRGRQAGVCFGDXGSPLVCN-----GLIHGIASFVRGGCASGL 198

>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase Length = 218

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 308 ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCG 367
           A  R +    QC+A GWG +     + S L+++ V +   S+CR            ++C 
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRS----------NVCT 159
Query: 368 GQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF-GSGCAKSGYPDVYTKLSFYLPWIR 426
                 +G C GD G PL C+       + GI SF   GCA   YPD +  ++ ++ WI 
Sbjct: 160 LVRGRQAGVCFGDXGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWID 214
Query: 427 KQI 429
             I
Sbjct: 215 SII 217

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           L++G    + + P+Q +L      L      CG VLIHP WV+TAAHC   ++       
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLL------CGGVLIHPLWVLTAAHCKKPNL------- 47
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHH--DIALLKLSRPTSARDKGVRAV 144
                LG  +  + E S+ +  V R  +H ++    H  DI LL+L+RP    +      
Sbjct: 48  --QVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLP 105
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
              D      +    C   GWG+    GD    ++   + L +   C   Y   +  +  
Sbjct: 106 LERDCSANTTS----CHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHAYPGQITQN-- 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            LC G       +C GDSGGPL C       +L G+ S+G+  CG
Sbjct: 159 MLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCG 198

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 319 CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACI 378
           C   GWG+    GD    ++   + L +   C   Y   +  +   LC G       +C 
Sbjct: 117 CHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHAYPGQITQN--MLCAGDEKYGKDSCQ 173
Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           GDSGGPL C       +L G+ S+G+  C     P VYT +  Y  WI+K I 
Sbjct: 174 GDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 94/212 (44%), Gaps = 32/212 (15%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRT 98
           P+QVSL   +       H+CG  LI+  WVV+AAHC  + I            LG+ +  
Sbjct: 21  PYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRI---------QVRLGEHNIN 64
Query: 99  EEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP 156
             E +E  +   +I  H  F     ++DI L+KLS P       + A   T A      P
Sbjct: 65  VLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK-----LNARVATVALPSSCAP 119
Query: 157 K-QQCVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF 214
              QC+ +GWG     G     L Q +  PL   + C   Y    ++    +C G L+G 
Sbjct: 120 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPG--KITDNMVCVGFLEGG 177
Query: 215 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
             +C G+SGGP+ C+ +     L GI S+G G
Sbjct: 178 KDSCQGNSGGPVVCNGE-----LQGIVSWGYG 204

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAW-----PWQNLITSFLS 283
           SL + +W ++    + S    + +R       ++ G E    A      P  +  T    
Sbjct: 36  SLINDQWVVSAAHCYKSR---IQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNND 92
Query: 284 AALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQ-IR 341
             L+KLS P       + A   T A      P   QC+ +GWG     G     L Q + 
Sbjct: 93  IMLIKLSSPVK-----LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLD 147
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            PL   + C   Y   +      +C G L+G   +C G+SGGP+ C+ +     L GI S
Sbjct: 148 APLLPQADCEASYPGKIT--DNMVCVGFLEGGKDSCQGNSGGPVVCNGE-----LQGIVS 200
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G GCA    P VYTK+  Y+ WI+  I
Sbjct: 201 WGYGCALPDNPGVYTKVCNYVDWIQDTI 228

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 21/198 (10%)
Query: 57  WCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHE 116
           +CG  LI+P WVVTAAHC   D F + +      VL        E  + R P E+     
Sbjct: 25  FCGGTLINPEWVVTAAHCDSTD-FQMQLGVHSKKVL-------NEDEQTRNPKEKFICPN 76
Query: 117 EFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL 174
           + +N     DI L+KL +P S      + +        P +    C   GWG + P  + 
Sbjct: 77  KNNNEVLDKDIMLIKLDKPISNS----KHIAPLSLPSSPPSVGSVCRIMGWGSITPVKET 132
Query: 175 VSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDG 233
              +     + L + +VC+  Y + +  +   LC G + G    C GDSGGPL C+ +  
Sbjct: 133 FPDVPYCANINLLDHAVCQAGYPELLAEY-RTLCAGIVQGGKDTCGGDSGGPLICNGQ-- 189
Query: 234 RWYLAGITSFGSGYCGVG 251
                GI S+G+  CG G
Sbjct: 190 ---FQGIVSYGAHPCGQG 204

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 319 CVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C   GWG + P  +    +     + L + +VC+  Y + +  +   LC G + G    C
Sbjct: 118 CRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYR-TLCAGIVQGGKDTC 176
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
            GDSGGPL C+ +       GI S+G+  C +   P +YT +  Y  WI++ I
Sbjct: 177 GGDSGGPLICNGQ-----FQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 33/224 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIH--NDIFSLPI 84
           ++ GK++  G +P+QVSL++         H CGA ++  + V+TAAHC+   +++  L +
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGS------HRCGASILDNNNVLTAAHCVDGLSNLNRLKV 54
Query: 85  PELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNY--HHDIALLKLSRPTSARDKGVR 142
             + T  L        E  +V   VE   V++ + ++   +D+AL+ L+ P    D    
Sbjct: 55  -HVGTNYL-------SESGDV-YDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQP 105
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC-RDKYGDSVEL 201
               T+ +    NP   C  TGWG  +  G+  + L++I + +H    C RD++     +
Sbjct: 106 IKLSTNDEDLESNP---CTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW----RV 158
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
              H+C     G  GAC GDSGGPL   + +G     GI SFGS
Sbjct: 159 IDSHICTLTKRG-EGACHGDSGGPL---VANGAQI--GIVSFGS 196

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 30/236 (12%)
Query: 195 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRY 254
           Y  S+ L G H CG        A I D+   L  +       + G+++       VG  Y
Sbjct: 14  YQVSLRLSGSHRCG--------ASILDNNNVLTAA-----HCVDGLSNLNRLKVHVGTNY 60
Query: 255 SHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVN 314
                 + + ++++        L+ +    AL+ L+ P    D        T+ +    N
Sbjct: 61  LSESGDVYDVEDAVVNKNYDDFLLRN--DVALVHLTNPIKFNDLVQPIKLSTNDEDLESN 118
Query: 315 PKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC-RDKYGDSVELHGGHLCGGQLDGF 373
           P   C  TGWG  +  G+  + L++I + +H    C RD++     +   H+C     G 
Sbjct: 119 P---CTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW----RVIDSHICTLTKRG- 170
Query: 374 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            GAC GDSGGPL   + +G     GI SFGS CA  G PDVYT++S ++ WI   +
Sbjct: 171 EGACHGDSGGPL---VANGAQI--GIVSFGSPCAL-GEPDVYTRVSSFVSWINANL 220

>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9 Angstroms Resolution Length = 226

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 102/241 (42%), Gaps = 32/241 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G ES   + P+   L+++         +CG  LI  ++V+TAAHC    I       
Sbjct: 1   IIGGTESKPHSRPYMAYLEIVTSNGP--SKFCGGFLIRRNFVLTAAHCAGRSI------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
             T  LG  + TEEE +  ++ V +   H +++    HHDI LLKL    S         
Sbjct: 52  --TVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASL--TLAVGT 107
Query: 145 CLTDADKRPVNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
               +    V P + C   GWGR   +KP  D    L+++++ L +   C   + D    
Sbjct: 108 LPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD-- 161
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC---GVGIRYSHRQ 258
           H   LC G       A  GDSGGPL C+         GI S+G        V  R SH +
Sbjct: 162 HNLQLCVGNPRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDAKPPAVFTRISHYR 216
Query: 259 P 259
           P
Sbjct: 217 P 217

>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9 Angstroms Resolution Length = 226

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 313 VNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
           V P + C   GWGR   +KP  D    L+++++ L +   C   + D    H   LC G 
Sbjct: 117 VPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD--HNLQLCVGN 170
Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
                 A  GDSGGPL C+         GI S+G   AK   P V+T++S Y PWI +
Sbjct: 171 PRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQ 221

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 122/281 (43%), Gaps = 41/281 (14%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG+  R +    R+  G+++  G +PWQV        L L        L++ +WV+TAAH
Sbjct: 76  CGLSARTTGG--RIYGGQKAKPGDFPWQV--------LILGGTTAAGALLYDNWVLTAAH 125
Query: 74  CIH---NDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN---YHHDIAL 127
            ++   +D  +L I       +G   R     ++     E + +HE + +   + +DIAL
Sbjct: 126 AVYEQKHDASALDIR------MGTLKRLSPHYTQAW--SEAVFIHEGYTHDAGFDNDIAL 177
Query: 128 LKLSRPTSARDKGVRAVCLTDADKRPVNPKQQC-VATGWGRVKPKGDLVSKLRQIRVPLH 186
           +KL+      +  +  +CL   +            A+GWG  + +G L   L  + +P+ 
Sbjct: 178 IKLNNKV-VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIV 235
Query: 187 NISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQ-CSLKDGRWYLAGIT 241
           +   C   Y       G      LC G   G   +C GDSGG L     +  RW++ GI 
Sbjct: 236 DHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIV 295
Query: 242 SFGSGYCGVGIRYSHRQPRLINGKESIRGAWPW-QNLITSF 281
           S+GS  CG   +Y     ++IN         PW +N+I+ F
Sbjct: 296 SWGSMNCGEAGQYG-VYTKVIN-------YIPWIENIISDF 328

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQC-VATGWGRVKPKGDLVSKLRQIRVP 343
           AL+KL+      +  +  +CL   +            A+GWG  + +G L   L  + +P
Sbjct: 176 ALIKLNNKV-VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIP 233
Query: 344 LHNISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQ-CSLKDGRWYLAG 398
           + +   C   Y       G      LC G   G   +C GDSGG L     +  RW++ G
Sbjct: 234 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 293
Query: 399 ITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+GS  C ++G   VYTK+  Y+PWI   I+
Sbjct: 294 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 326

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+   A P+  S+Q+         H CG VL+   WV++AAHC+ +         
Sbjct: 1   ILGGREAEAHARPYMASVQLNGA------HLCGGVLVAEQWVLSAAHCLEDAADG----- 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
               +LG    ++ E S+    V R   H ++      HD+ LL+LS   +     VR +
Sbjct: 50  KVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDYQPDTIDHDLLLLQLSEKATL-GPAVRPL 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
                D R V P   C   GWG V   G     L+ + +P+ + + C  +      +   
Sbjct: 109 PWQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITER 167
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            +C         +C GDSGGPL C        L G+ S+GS  CG
Sbjct: 168 LMCAES--NRRDSCKGDSGGPLVCG-----GVLEGVVSWGSRVCG 205

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 92/238 (38%), Gaps = 35/238 (14%)
Query: 195 YGDSVELHGGHLCGGQLDG----FSGA-CIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           Y  SV+L+G HLCGG L       S A C+ D+         DG+  +      G+    
Sbjct: 14  YMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAA--------DGKVQVL----LGA---- 57
Query: 250 VGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSAR-DKGVRAVCLTDA 308
               +S  QP        +  A P  +     +   LL L     A     VR +     
Sbjct: 58  ----HSLSQPEPSKRLYDVLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRV 113
Query: 309 DKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGG 368
           D R V P   C   GWG V   G     L+ + +P+ + + C  +      +    +C  
Sbjct: 114 D-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE 172
Query: 369 QLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWI 425
                  +C GDSGGPL C        L G+ S+GS  C     P +YT+++ Y  WI
Sbjct: 173 S--NRRDSCKGDSGGPLVCG-----GVLEGVVSWGSRVCGNRKKPGIYTRVASYAAWI 223

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 24/211 (11%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
            +I GKE    + P+  S+Q          H CG VLI P WV+TAAHC     +     
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGH------HVCGGVLIDPQWVLTAAHC----QYRFTKG 51
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERI----RVHEEFHNYHHDIALLKLSRPTSAR-DKG 140
           +  T VLG    ++ E S+  + +++     RV  +  +  +DI L+KL   T+A+ +K 
Sbjct: 52  QSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQS--NDIMLVKLQ--TAAKLNKH 107
Query: 141 VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDK--YGD 197
           V+ + +    K  +    +C  TGWG   P     S  LR++ V + +  +C  +  Y  
Sbjct: 108 VKMLHI--RSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNG 165
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQC 228
              +    +C G   G   +C GD+GGPL C
Sbjct: 166 DPFITKDMVCAGDAKGQKDSCKGDAGGPLIC 196

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 36/245 (14%)
Query: 195 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI---TSFGSGYCGVG 251
           +  S++  G H+CGG                    L D +W L        F  G     
Sbjct: 16  FMASIQYGGHHVCGG-------------------VLIDPQWVLTAAHCQYRFTKGQSPTV 56
Query: 252 IRYSHRQPRLINGKES--IRGAWPWQNLITSFLSAALLKLSRPTSAR-DKGVRAVCLTDA 308
           +  +H   +    K++  I+   P+  + +   S  ++ +   T+A+ +K V+ + +   
Sbjct: 57  VLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHI--R 114
Query: 309 DKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDK--YGDSVELHGGHL 365
            K  +    +C  TGWG   P     S  LR++ V + +  +C  +  Y     +    +
Sbjct: 115 SKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMV 174
Query: 366 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLS-FYLPW 424
           C G   G   +C GD+GGPL C     +     I S G  C  +  P +YT L+  Y  W
Sbjct: 175 CAGDAKGQKDSCKGDAGGPLIC-----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTW 229
Query: 425 IRKQI 429
           I+  +
Sbjct: 230 IKSNL 234

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 122/281 (43%), Gaps = 41/281 (14%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG+  R +  Q  +  G+++  G +PWQV        L L        L++ +WV+TAAH
Sbjct: 151 CGLSARTTGGQ--IYGGQKAKPGDFPWQV--------LILGGTTAAGALLYDNWVLTAAH 200
Query: 74  CIH---NDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN---YHHDIAL 127
            ++   +D  +L I       +G   R     ++     E + +HE + +   + +DIAL
Sbjct: 201 AVYEQKHDASALDI------RMGTLKRLSPHYTQAW--SEAVFIHEGYTHDAGFDNDIAL 252
Query: 128 LKLSRPTSARDKGVRAVCLTDADKRPVNPKQQC-VATGWGRVKPKGDLVSKLRQIRVPLH 186
           +KL+      +  +  +CL   +            A+GWG  + +G L   L  + +P+ 
Sbjct: 253 IKLNNKV-VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIV 310
Query: 187 NISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQ-CSLKDGRWYLAGIT 241
           +   C   Y       G      LC G   G   +C GDSGG L     +  RW++ GI 
Sbjct: 311 DHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIV 370
Query: 242 SFGSGYCGVGIRYSHRQPRLINGKESIRGAWPW-QNLITSF 281
           S+GS  CG   +Y     ++IN         PW +N+I+ F
Sbjct: 371 SWGSMNCGEAGQYGVYT-KVIN-------YIPWIENIISDF 403

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQC-VATGWGRVKPKGDLVSKLRQIRVP 343
           AL+KL+      +  +  +CL   +            A+GWG  + +G L   L  + +P
Sbjct: 251 ALIKLNNKV-VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIP 308
Query: 344 LHNISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQ-CSLKDGRWYLAG 398
           + +   C   Y       G      LC G   G   +C GDSGG L     +  RW++ G
Sbjct: 309 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 368
Query: 399 ITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+GS  C ++G   VYTK+  Y+PWI   I+
Sbjct: 369 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG  +    ++ R+I G+++  G +PWQV   + H R        G  L+   W++TAAH
Sbjct: 77  CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNI-HGR-------GGGALLGDRWILTAAH 128
Query: 74  CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVH-----EEFHNYHHDIALL 128
            ++               LG  +  EE       P+ R+ VH     +E +N+  DIALL
Sbjct: 129 TLYPKEHEAQSNASLDVFLGHTN-VEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALL 187
Query: 129 KLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI 188
           +L    +     +  +CL D D    +       +G+G ++ K  +   LR +R+P+ N 
Sbjct: 188 ELENSVTL-GPNLLPICLPDNDTF-YDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANP 243
Query: 189 SVCRD--KYGDSVELHGGHL-CGGQLDGFSGACIGDSGGPLQCSLKD---GRWYLAGITS 242
             C +  +  + +++   ++ C G       AC GDSGG    +++D    RW   GI S
Sbjct: 244 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVF--AVRDPNTDRWVATGIVS 301
Query: 243 FGSG 246
           +G G
Sbjct: 302 WGIG 305

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L    +     +  +CL D D    +       +G+G ++ K  +   LR +R+P+
Sbjct: 185 ALLELENSVTL-GPNLLPICLPDNDTF-YDLGLMGYVSGFGVMEEK--IAHDLRFVRLPV 240
Query: 345 HNISVCRD--KYGDSVELHGGHL-CGGQLDGFSGACIGDSGGPLQCSLKD---GRWYLAG 398
            N   C +  +  + +++   ++ C G       AC GDSGG    +++D    RW   G
Sbjct: 241 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVF--AVRDPNTDRWVATG 298
Query: 399 ITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           I S+G GC++ GY   YTK+  Y+ WI+K++
Sbjct: 299 IVSWGIGCSR-GY-GFYTKVLNYVDWIKKEM 327

>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small Molecule Inhibitor Length = 226

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 101/241 (41%), Gaps = 32/241 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E    + P+   L+++         +CG  LI  ++V+TAAHC    I       
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVTSNGP--SKFCGGFLIRRNFVLTAAHCAGRSI------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
             T  LG  + TEEE +  ++ V +   H +++    HHDI LLKL    S         
Sbjct: 52  --TVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASL--TLAVGT 107
Query: 145 CLTDADKRPVNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
               +    V P + C   GWGR   +KP  D    L+++++ L +   C   + D    
Sbjct: 108 LPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD-- 161
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC---GVGIRYSHRQ 258
           H   LC G       A  GDSGGPL C+         GI S+G        V  R SH Q
Sbjct: 162 HNLQLCVGNPRKTKSAFKGDSGGPLLCA-----GAAQGIVSYGRSDAKPPAVFTRISHYQ 216
Query: 259 P 259
           P
Sbjct: 217 P 217

>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small Molecule Inhibitor Length = 226

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 313 VNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
           V P + C   GWGR   +KP  D    L+++++ L +   C   + D    H   LC G 
Sbjct: 117 VPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD--HNLQLCVGN 170
Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
                 A  GDSGGPL C+         GI S+G   AK   P V+T++S Y PWI +
Sbjct: 171 PRKTKSAFKGDSGGPLLCA-----GAAQGIVSYGRSDAKP--PAVFTRISHYQPWINQ 221

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 22/225 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+   A P+  S+QV         H CG VL+   WV++AAHC+ +         
Sbjct: 1   ILGGREAEAHARPYMASVQVNGE------HLCGGVLVAEQWVLSAAHCLEDAADG----- 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
               +LG    ++ E S+    V R   H +       HD+ LL+LS   +     VR +
Sbjct: 50  KVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATL-GPAVRPL 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
                D R V P   C   GWG V   G    +L+ + +P+ + + C  +      +   
Sbjct: 109 PWQRVD-RDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQR 167
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            +C         +C GDSGGPL C        L G+ + GS  CG
Sbjct: 168 MMCAES--NRRDSCKGDSGGPLVCG-----GVLEGVVTSGSRVCG 205

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 311 RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL 370
           R V P   C   GWG V   G    +L+ + +P+ + + C  +      +    +C    
Sbjct: 115 RDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMMCAES- 173
Query: 371 DGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWI 425
                +C GDSGGPL C        L G+ + GS  C     P +YT+++ Y  WI
Sbjct: 174 -NRRDSCKGDSGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223

>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin Length = 222

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 25/220 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  + +G +P+ V L +           CG  L     V+TAAHC+     +  I  
Sbjct: 1   VVGGTRAAQGEFPFMVRLSM----------GCGGALYAQDIVLTAAHCVSGSGNNTSI-- 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCL 146
             TA  G  D   +  S V++   ++     ++    D AL+KL++P       +    L
Sbjct: 49  --TATGGVVDL--QSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQP-------INQPTL 97
Query: 147 TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHL 206
             A     N     VA GWG  +  G     L +  VP  + + CR  YG+ + +    +
Sbjct: 98  KIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPFVSDAACRSAYGNEL-VANEEI 155
Query: 207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           C G   G    C GDSGGP+        W   GI S+G G
Sbjct: 156 CAGYDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGEG 195

>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin Length = 222

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL++P       +    L  A     N     VA GWG  +  G     L +  VP 
Sbjct: 84  ALIKLAQP-------INQPTLKIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPF 135
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + CR  YG+ + +    +C G   G    C GDSGGP+        W   GI S+G 
Sbjct: 136 VSDAACRSAYGNEL-VANEEICAGYDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGE 194
Query: 405 GCAKSGYPDVYTKLSFYLPWI 425
           GCA+ G   VYT++S +   I
Sbjct: 195 GCARKGKYGVYTEVSTFASAI 215

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 21/198 (10%)
Query: 57  WCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHE 116
           +CG  LI+P WVVTAAHC   + F + +      VL        E  + R P E+     
Sbjct: 25  FCGGTLINPEWVVTAAHCDSTN-FQMQLGVHSKKVL-------NEDEQTRNPKEKFICPN 76
Query: 117 EFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL 174
           + +N     DI L+KL +P S      + +        P +    C   GWG + P  + 
Sbjct: 77  KNNNEVLDKDIMLIKLDKPISNS----KHIAPLSLPSSPPSVGSVCRIMGWGSITPVKET 132
Query: 175 VSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDG 233
              +     + L + +VC+  Y + +  +   LC G + G    C GDSGGPL C+ +  
Sbjct: 133 FPDVPYCANINLLDHAVCQAGYPELLAEY-RTLCAGIVQGGKDTCGGDSGGPLICNGQ-- 189
Query: 234 RWYLAGITSFGSGYCGVG 251
                GI S+G+  CG G
Sbjct: 190 ---FQGIVSYGAHPCGQG 204

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 319 CVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C   GWG + P  +    +     + L + +VC+  Y + +  +   LC G + G    C
Sbjct: 118 CRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYR-TLCAGIVQGGKDTC 176
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
            GDSGGPL C+ +       GI S+G+  C +   P +YT +  Y  WI++ I
Sbjct: 177 GGDSGGPLICNGQ-----FQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG  +    ++ R+I G+++  G +PWQV   + H R        G  L+   W++TAAH
Sbjct: 77  CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNI-HGR-------GGGALLGDRWILTAAH 128
Query: 74  CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVH-----EEFHNYHHDIALL 128
            ++               LG  +  EE       P+ R+ VH     +E +N+  DIALL
Sbjct: 129 TLYPKEHEAQSNASLDVFLGHTN-VEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALL 187
Query: 129 KLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI 188
           +L    +     +  +CL D D    +       +G+G ++ K  +   LR +R+P+ N 
Sbjct: 188 ELENSVTL-GPNLLPICLPDNDTF-YDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANP 243
Query: 189 SVCRD--KYGDSVELHGGHL-CGGQLDGFSGACIGDSGGPLQCSLKD---GRWYLAGITS 242
             C +  +  + +++   ++ C G       AC GD+GG    +++D    RW   GI S
Sbjct: 244 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVF--AVRDPNTDRWVATGIVS 301
Query: 243 FGSG 246
           +G G
Sbjct: 302 WGIG 305

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L    +     +  +CL D D    +       +G+G ++ K  +   LR +R+P+
Sbjct: 185 ALLELENSVTL-GPNLLPICLPDNDTF-YDLGLMGYVSGFGVMEEK--IAHDLRFVRLPV 240
Query: 345 HNISVCRD--KYGDSVELHGGHL-CGGQLDGFSGACIGDSGGPLQCSLKD---GRWYLAG 398
            N   C +  +  + +++   ++ C G       AC GD+GG    +++D    RW   G
Sbjct: 241 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVF--AVRDPNTDRWVATG 298
Query: 399 ITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           I S+G GC++ GY   YTK+  Y+ WI+K++
Sbjct: 299 IVSWGIGCSR-GY-GFYTKVLNYVDWIKKEM 327

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL++P       +    L  A     N     VA GWG  +  G     L +  VP 
Sbjct: 84  ALIKLAQP-------INQPTLKIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPF 135
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLD-GFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
            + + CR  YG+ + +    +C G  D G    C GDSGGP+        W   GI S+G
Sbjct: 136 VSDAACRSAYGNEL-VANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWG 194
Query: 404 SGCAKSGYPDVYTKLSFYLPWI 425
            GCA+ GYP VYT++S +   I
Sbjct: 195 YGCARPGYPGVYTEVSTFASAI 216

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL++P       +    L  A     N     VA GWG  +  G     L +  VP 
Sbjct: 84  ALIKLAQP-------INQPTLKIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPF 135
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLD-GFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
            + + CR  YG+ + +    +C G  D G    C GDSGGP+        W   GI S+G
Sbjct: 136 VSDAACRSAYGNEL-VANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWG 194
Query: 404 SGCAKSGYPDVYTKLSFYLPWI 425
            GCA+ GYP VYT++S +   I
Sbjct: 195 YGCARPGYPGVYTEVSTFASAI 216

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 22/226 (9%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           R++ G+E+   A P+  S+Q+         H CG VL+   WV++AAHC+ +        
Sbjct: 7   RILGGREAEAHARPYMASVQLNGA------HLCGGVLVAEQWVLSAAHCLEDAADG---- 56
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRA 143
                +LG    ++ E S+    V R   H +       HD+ LL+LS   +     VR 
Sbjct: 57  -KVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATL-GPAVRP 114
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           +     D R V P   C   GWG V   G     L+ + +P+ + + C  +      +  
Sbjct: 115 LPWQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITE 173
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             +C         +C GDSGGPL C        L G+ + GS  CG
Sbjct: 174 RLMCAES--NRRDSCKGDSGGPLVCG-----GVLEGVVTSGSRVCG 212

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 91/238 (38%), Gaps = 35/238 (14%)
Query: 195 YGDSVELHGGHLCGGQLDG----FSGA-CIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           Y  SV+L+G HLCGG L       S A C+ D+         DG+  +      G+    
Sbjct: 21  YMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAA--------DGKVQVL----LGA---- 64
Query: 250 VGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSAR-DKGVRAVCLTDA 308
               +S  QP        +  A P  +     +   LL L     A     VR +     
Sbjct: 65  ----HSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRV 120
Query: 309 DKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGG 368
           D R V P   C   GWG V   G     L+ + +P+ + + C  +      +    +C  
Sbjct: 121 D-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE 179
Query: 369 QLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWI 425
                  +C GDSGGPL C        L G+ + GS  C     P +YT+++ Y  WI
Sbjct: 180 S--NRRDSCKGDSGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWI 230

>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With Benzamidine Length = 223

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL++P       +    L  A     N     VA GWG  +  G     L +  VP 
Sbjct: 84  ALIKLAQP-------INQPTLKIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPF 135
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLD-GFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
            + + CR  YG+ + +    +C G  D G    C GDSGGP+        W   GI S+G
Sbjct: 136 VSDAACRSAYGNEL-VANEEICAGYPDTGGVDPCQGDSGGPMFRKDNADEWIQVGIVSWG 194
Query: 404 SGCAKSGYPDVYTKLSFYLPWI 425
            GCA+ GYP VYT++S +   I
Sbjct: 195 YGCARPGYPGVYTEVSTFASAI 216

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG  +    ++ ++I G+++  G +PWQV   + H R        G  L+   W++TAAH
Sbjct: 145 CGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNI-HGR-------GGGALLGDRWILTAAH 196
Query: 74  CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVH-----EEFHNYHHDIALL 128
            ++               LG  +  EE       P+ R+ VH     +E +N+  DIALL
Sbjct: 197 TLYPKEHEAQSNASLDVFLGHTN-VEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALL 255
Query: 129 KLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI 188
           +L    +     +  +CL D D    +       +G+G ++ K  +   LR +R+P+ N 
Sbjct: 256 ELENSVTL-GPNLLPICLPDNDTF-YDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANP 311
Query: 189 SVCRD--KYGDSVELHGGHL-CGGQLDGFSGACIGDSGGPLQCSLKD---GRWYLAGITS 242
             C +  +  + +++   ++ C G       AC GDSGG    +++D    RW   GI S
Sbjct: 312 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVF--AVRDPNTDRWVATGIVS 369
Query: 243 FGSG 246
           +G G
Sbjct: 370 WGIG 373

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L    +     +  +CL D D    +       +G+G ++ K  +   LR +R+P+
Sbjct: 253 ALLELENSVTL-GPNLLPICLPDNDTF-YDLGLMGYVSGFGVMEEK--IAHDLRFVRLPV 308
Query: 345 HNISVCRD--KYGDSVELHGGHL-CGGQLDGFSGACIGDSGGPLQCSLKD---GRWYLAG 398
            N   C +  +  + +++   ++ C G       AC GDSGG    +++D    RW   G
Sbjct: 309 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVF--AVRDPNTDRWVATG 366
Query: 399 ITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           I S+G GC++ GY   YTK+  Y+ WI+K++
Sbjct: 367 IVSWGIGCSR-GY-GFYTKVLNYVDWIKKEM 395

>pdb|1NN6|A Chain A, Human Pro-Chymase Length = 228

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 101/242 (41%), Gaps = 32/242 (13%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
            +I G E    + P+   L+++         +CG  LI  ++V+TAAHC    I      
Sbjct: 2   EIIGGTECKPHSRPYMAYLEIVTSNGP--SKFCGGFLIRRNFVLTAAHCAGRSI------ 53
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRA 143
              T  LG  + TEEE +  ++ V +   H +++    HHDI LLKL    S        
Sbjct: 54  ---TVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASL--TLAVG 108
Query: 144 VCLTDADKRPVNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE 200
                +    V P + C   GWGR   +KP  D    L+++++ L +   C   + D   
Sbjct: 109 TLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD- 163
Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC---GVGIRYSHR 257
            H   LC G       A  GDSGGPL C+         GI S+G        V  R SH 
Sbjct: 164 -HNLQLCVGNPRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDAKPPAVFTRISHY 217
Query: 258 QP 259
           +P
Sbjct: 218 RP 219

>pdb|1NN6|A Chain A, Human Pro-Chymase Length = 228

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 313 VNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
           V P + C   GWGR   +KP  D    L+++++ L +   C   + D    H   LC G 
Sbjct: 119 VPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD--HNLQLCVGN 172
Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
                 A  GDSGGPL C+         GI S+G   AK   P V+T++S Y PWI +
Sbjct: 173 PRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQ 223

>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex Length = 226

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 101/241 (41%), Gaps = 32/241 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E    + P+   L+++         +CG  LI  ++V+TAAHC    I       
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVTSNGP--SKFCGGFLIRRNFVLTAAHCAGRSI------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
             T  LG  + TEEE +  ++ V +   H +++    HHDI LLKL    S         
Sbjct: 52  --TVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASL--TLAVGT 107
Query: 145 CLTDADKRPVNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 201
               +    V P + C   GWGR   +KP  D    L+++++ L +   C   + D    
Sbjct: 108 LPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD-- 161
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC---GVGIRYSHRQ 258
           H   LC G       A  GDSGGPL C+         GI S+G        V  R SH +
Sbjct: 162 HNLQLCVGNPRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDAKPPAVFTRISHYR 216
Query: 259 P 259
           P
Sbjct: 217 P 217

>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex Length = 226

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 313 VNPKQQCVATGWGR---VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
           V P + C   GWGR   +KP  D    L+++++ L +   C   + D    H   LC G 
Sbjct: 117 VPPGRMCRVAGWGRTGVLKPGSD---TLQEVKLRLMDPQAC-SHFRDFD--HNLQLCVGN 170
Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
                 A  GDSGGPL C+         GI S+G   AK   P V+T++S Y PWI +
Sbjct: 171 PRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQ 221

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 40/235 (17%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E    + P+ V L +    +      C   LI   WV+TAAHC  N        +
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTI------CAGALIAKDWVLTAAHCNLN--------K 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------HNYHHDIALLKLSRPTSARDK 139
               +LG    T EE ++     + + V +EF            D+ LL+L+     + K
Sbjct: 47  RSQVILGAHSITREEPTK-----QIMLVKKEFPYPCYDPATREGDLKLLQLTE----KAK 97
Query: 140 GVRAVCLTDADKR--PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK--Y 195
             + V +    K+   V P   C   GWGR          LR++ + + +  VC D+  Y
Sbjct: 98  INKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHY 157
Query: 196 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGYCG 249
             +  +    +C G L G   +C GDSG PL C          G+TSFG    CG
Sbjct: 158 NFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLC-----EGVFRGVTSFGLENKCG 207

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 313 VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK--YGDSVELHGGHLCGGQL 370
           V P   C   GWGR          LR++ + + +  VC D+  Y  +  +    +C G L
Sbjct: 114 VKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSL 173
Query: 371 DGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG--SGCAKSGYPDVYTKLS-FYLPWIRK 427
            G   +C GDSG PL C          G+TSFG  + C     P VY  LS  +L WI  
Sbjct: 174 RGGRDSCNGDSGSPLLC-----EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIM 228
Query: 428 QINIAV 433
            I  AV
Sbjct: 229 TIKGAV 234

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 40/235 (17%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E    + P+ V L +    +      C   LI   WV+TAAHC  N        +
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTI------CAGALIAKDWVLTAAHCNLN--------K 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------HNYHHDIALLKLSRPTSARDK 139
               +LG    T EE ++     + + V +EF            D+ LL+L+     + K
Sbjct: 47  RSQVILGAHSITREEPTK-----QIMLVKKEFPYPCYDPATREGDLKLLQLTE----KAK 97
Query: 140 GVRAVCLTDADKR--PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK--Y 195
             + V +    K+   V P   C   GWGR          LR++ + + +  VC D+  Y
Sbjct: 98  INKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHY 157
Query: 196 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGYCG 249
             +  +    +C G L G   +C GDSG PL C          G+TSFG    CG
Sbjct: 158 NFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLC-----EGVFRGVTSFGLENKCG 207

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 313 VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK--YGDSVELHGGHLCGGQL 370
           V P   C   GWGR          LR++ + + +  VC D+  Y  +  +    +C G L
Sbjct: 114 VKPGTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGSL 173
Query: 371 DGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG--SGCAKSGYPDVYTKLS-FYLPWIRK 427
            G   +C GDSG PL C          G+TSFG  + C     P VY  LS  +L WI  
Sbjct: 174 RGGRDSCNGDSGSPLLC-----EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIM 228
Query: 428 QINIAV 433
            I  AV
Sbjct: 229 TIKGAV 234

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 22/225 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+   A P+  S+Q+         H CG VL+   WV++AAHC+ +         
Sbjct: 1   ILGGREAEAHARPYMASVQLNGA------HLCGGVLVAEQWVLSAAHCLEDAADG----- 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
               +LG    ++ E S+    V R   H +       HD+ LL+LS   +     VR +
Sbjct: 50  KVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATL-GPAVRPL 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
                D R V P   C   GWG V   G     L+ + +P+ + + C  +      +   
Sbjct: 109 PWQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITER 167
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            +C         +C GDSGGPL C        L G+ + GS  CG
Sbjct: 168 LMCAES--NRRDSCKGDSGGPLVCG-----GVLEGVVTSGSAVCG 205

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 91/238 (38%), Gaps = 35/238 (14%)
Query: 195 YGDSVELHGGHLCGGQLDG----FSGA-CIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           Y  SV+L+G HLCGG L       S A C+ D+         DG+  +      G+    
Sbjct: 14  YMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAA--------DGKVQVL----LGA---- 57
Query: 250 VGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSAR-DKGVRAVCLTDA 308
               +S  QP        +  A P  +     +   LL L     A     VR +     
Sbjct: 58  ----HSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRV 113
Query: 309 DKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGG 368
           D R V P   C   GWG V   G     L+ + +P+ + + C  +      +    +C  
Sbjct: 114 D-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE 172
Query: 369 QLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWI 425
                  +C GDSGGPL C        L G+ + GS  C     P +YT+++ Y  WI
Sbjct: 173 S--NRRDSCKGDSGGPLVCG-----GVLEGVVTSGSAVCGNRKKPGIYTRVASYAAWI 223

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 395
           KL+Q  +P+ + + C+  +G   ++     C G   G   +C+GDSGGPL C  KDG W 
Sbjct: 8   KLQQAALPIVSEADCKKSWGS--KITDVMTCAGA-SGVD-SCMGDSGGPLVCQ-KDGVWT 62
Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
           LAGI S+GSG   +  P VY++++  +PW+++
Sbjct: 63  LAGIVSWGSGVCSTSTPGVYSRVTALMPWVQQ 94

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +ING +      PWQ +L +   +L     +CGAVL+HP W++TAAHC           +
Sbjct: 1   IINGSDCDMHTQPWQAALLLRPNQL-----YCGAVLVHPQWLLTAAHCRK---------K 46
Query: 87  LWTAVLGDWDRTE--EEKSEVRIPVERIRVHEEFHNYH-HDIALLKLSRPTSARDKGVRA 143
           ++   LG +  +   E   ++   V+ I      H  H +D+ L+KL+R    R +  + 
Sbjct: 47  VFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNR----RIRPTKD 102
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVK-PKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           V   +      +   +C+ +GWG  K P+      L+ + + + +   C D Y   ++  
Sbjct: 103 VRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQID-- 160
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
               C G   G   +C GDSGGP+ C+       L G+ S+G   C 
Sbjct: 161 DTMFCAGDKAG-RDSCQGDSGGPVVCNGS-----LQGLVSWGDYPCA 201

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 309 DKRPVNPKQ-------QCVATGWGRVK-PKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 360
           D RP+N          +C+ +GWG  K P+      L+ + + + +   C D Y   ++ 
Sbjct: 102 DVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQID- 160
Query: 361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLS 419
                C G   G   +C GDSGGP+ C+       L G+ S+G   CA+   P VYT L 
Sbjct: 161 -DTMFCAGDKAG-RDSCQGDSGGPVVCNGS-----LQGLVSWGDYPCARPNRPGVYTNLC 213
Query: 420 FYLPWIRKQIN 430
            +  WI++ I 
Sbjct: 214 KFTKWIQETIQ 224

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 116/268 (43%), Gaps = 39/268 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIH---NDIFSLP 83
           +  G+++  G +PWQV        L L        L++ +WV+TAAH ++   +D  +L 
Sbjct: 1   IYGGQKAKPGDFPWQV--------LILGGTTAAGALLYDNWVLTAAHAVYEQKHDASALD 52
Query: 84  IPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN---YHHDIALLKLSRPTSARDKG 140
           I       +G   R     ++     E + +HE + +   + +DIAL+KL+      +  
Sbjct: 53  IR------MGTLKRLSPHYTQAW--SEAVFIHEGYTHDAGFDNDIALIKLNNKV-VINSN 103
Query: 141 VRAVCLTDADKRPVNPKQQC-VATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV 199
           +  +CL   +            A+GWG  + +G L   L  + +P+ +   C   Y    
Sbjct: 104 ITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIVDHQKCTAAYEKPP 162
Query: 200 ELHG----GHLCGGQLDGFSGACIGDSGGPLQ-CSLKDGRWYLAGITSFGSGYCGVGIRY 254
              G      LC G   G   +C GDSGG L     +  RW++ GI S+GS  CG   +Y
Sbjct: 163 YPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQY 222
Query: 255 SHRQPRLINGKESIRGAWPW-QNLITSF 281
                ++IN         PW +N+I+ F
Sbjct: 223 G-VYTKVIN-------YIPWIENIISDF 242

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQC-VATGWGRVKPKGDLVSKLRQIRVP 343
           AL+KL+      +  +  +CL   +            A+GWG  + +G L   L  + +P
Sbjct: 90  ALIKLNNKV-VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIP 147
Query: 344 LHNISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQ-CSLKDGRWYLAG 398
           + +   C   Y       G      LC G   G   +C GDSGG L     +  RW++ G
Sbjct: 148 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 207
Query: 399 ITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+GS  C ++G   VYTK+  Y+PWI   I+
Sbjct: 208 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 22/225 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+   A P+  S+Q+         H CG VL+   WV++AAHC+ +         
Sbjct: 1   ILGGREAEAHARPYMASVQLNGA------HLCGGVLVAEQWVLSAAHCLEDAADG----- 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
               +LG    ++ E S+    V R   H +       HD+ LL+LS   +     VR +
Sbjct: 50  KVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATL-GPAVRPL 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
                D R V P   C   GWG V   G     L+ + +P+ + + C  +      +   
Sbjct: 109 PWQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITER 167
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            +C         +C GDSGGPL C        L G+ + GS  CG
Sbjct: 168 LMCAES--NRRDSCKGDSGGPLVCG-----GVLEGVVTSGSRVCG 205

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 91/238 (38%), Gaps = 35/238 (14%)
Query: 195 YGDSVELHGGHLCGGQLDG----FSGA-CIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           Y  SV+L+G HLCGG L       S A C+ D+         DG+  +      G+    
Sbjct: 14  YMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAA--------DGKVQVL----LGA---- 57
Query: 250 VGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSAR-DKGVRAVCLTDA 308
               +S  QP        +  A P  +     +   LL L     A     VR +     
Sbjct: 58  ----HSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRV 113
Query: 309 DKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGG 368
           D R V P   C   GWG V   G     L+ + +P+ + + C  +      +    +C  
Sbjct: 114 D-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE 172
Query: 369 QLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWI 425
                  +C GDSGGPL C        L G+ + GS  C     P +YT+++ Y  WI
Sbjct: 173 S--NRRDSCKGDSGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 39/268 (14%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIH---NDIFSLP 83
           +  G+++  G +PWQV        L L        L++ +WV+TAAH ++   +D  +L 
Sbjct: 1   IYGGQKAKPGDFPWQV--------LILGGTTAAGALLYDNWVLTAAHAVYEQKHDASALD 52
Query: 84  IPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN---YHHDIALLKLSRPTSARDKG 140
           I       +G   R     ++     E + +HE + +   + +DIAL+KL+      +  
Sbjct: 53  IR------MGTLKRLSPHYTQAW--SEAVFIHEGYTHDAGFDNDIALIKLNNKV-VINSN 103
Query: 141 VRAVCLTDADKRPVNPKQQC-VATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV 199
           +  +CL   +            A+GWG  + +G L   L  + +P+ +   C   Y    
Sbjct: 104 ITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIVDHQKCTAAYEKPP 162
Query: 200 ELHG----GHLCGGQLDGFSGACIGDSGGPLQ-CSLKDGRWYLAGITSFGSGYCGVGIRY 254
              G      LC G   G   +C GD+GG L     +  RW++ GI S+GS  CG   +Y
Sbjct: 163 YPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLDSETERWFVGGIVSWGSMNCGEAGQY 222
Query: 255 SHRQPRLINGKESIRGAWPW-QNLITSF 281
                ++IN         PW +N+I+ F
Sbjct: 223 G-VYTKVIN-------YIPWIENIISDF 242

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQC-VATGWGRVKPKGDLVSKLRQIRVP 343
           AL+KL+      +  +  +CL   +            A+GWG  + +G L   L  + +P
Sbjct: 90  ALIKLNNKV-VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIP 147
Query: 344 LHNISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQ-CSLKDGRWYLAG 398
           + +   C   Y       G      LC G   G   +C GD+GG L     +  RW++ G
Sbjct: 148 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLDSETERWFVGG 207
Query: 399 ITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+GS  C ++G   VYTK+  Y+PWI   I+
Sbjct: 208 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 29/226 (12%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
           +L++G    + + P+Q +L      L      CG VLIHP WV+TAAHC   ++      
Sbjct: 1   KLVHGGPCDKTSHPYQAALYTSGHLL------CGGVLIHPLWVLTAAHCKKPNL------ 48
Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHH--DIALLKLSRPTSARDKGVRA 143
                 LG  +  ++E S+ +  V R  +H ++    H  DI LL+L+RP    +     
Sbjct: 49  ---QVFLGKHNLRQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 105
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
               D   +  +    C   GWG+    GD    ++   + L +   C   Y   +  + 
Sbjct: 106 PLERDCSAQTTS----CHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHAYPGQITQN- 159
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             LC G       +C GDSGGPL C       +L G+ S+G+  CG
Sbjct: 160 -MLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCG 199

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           LL+L+RP    +         D   +  +    C   GWG+    GD    ++   + L 
Sbjct: 89  LLRLARPAKLSELIQPLPLERDCSAQTTS----CHILGWGKTA-DGDFPDTIQCAYIHLV 143
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS- 404
           +   C   Y   +  +   LC G       +C GDSGGPL C       +L G+ S+G+ 
Sbjct: 144 SREECEHAYPGQITQN--MLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNI 196
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
            C     P VYT +  Y  WI+K I 
Sbjct: 197 PCGSKEKPGVYTNVCRYTNWIQKTIQ 222

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG--ACIGDSGGPLQCSLKDGR 393
           KL+Q  +P+ + + C+  +G  +       C G     SG  +C+GDSGGPL C  KDG 
Sbjct: 8   KLQQAALPIVSEADCKKSWGSKIT--DVMTCAGA----SGVDSCMGDSGGPLVCQ-KDGV 60
Query: 394 WYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
           W LAGI S+GSG   +  P VY++++  +PW+++
Sbjct: 61  WTLAGIVSWGSGVCSTSTPAVYSRVTALMPWVQQ 94

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 22/225 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+E+   A P+  S+Q+         H CG VL+   WV++AAHC+ +         
Sbjct: 1   ILGGREAEAHARPYMASVQLNGA------HLCGGVLVAEQWVLSAAHCLEDAADG----- 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
               +LG    ++ E S+    V R   H +       HD+ LL+LS   +     VR +
Sbjct: 50  KVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATL-GPAVRPL 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
                D R V P   C   GWG V   G     L+ + +P+ + + C  +      +   
Sbjct: 109 PWQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITER 167
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            +C         +C GD+GGPL C        L G+ + GS  CG
Sbjct: 168 LMCAES--NRRDSCKGDAGGPLVCG-----GVLEGVVTSGSRVCG 205

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 91/238 (38%), Gaps = 35/238 (14%)
Query: 195 YGDSVELHGGHLCGGQLDG----FSGA-CIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           Y  SV+L+G HLCGG L       S A C+ D+         DG+  +      G+    
Sbjct: 14  YMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAA--------DGKVQVL----LGA---- 57
Query: 250 VGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSAR-DKGVRAVCLTDA 308
               +S  QP        +  A P  +     +   LL L     A     VR +     
Sbjct: 58  ----HSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRV 113
Query: 309 DKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGG 368
           D R V P   C   GWG V   G     L+ + +P+ + + C  +      +    +C  
Sbjct: 114 D-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE 172
Query: 369 QLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWI 425
                  +C GD+GGPL C        L G+ + GS  C     P +YT+++ Y  WI
Sbjct: 173 S--NRRDSCKGDAGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 27/245 (11%)
Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CGV       + R+I G ++    +PWQV     +P       W G  LI+  WV+TAAH
Sbjct: 70  CGVPREPFEEKQRIIGGSDADIKNFPWQVFFD--NP-------WAGGALINEYWVLTAAH 120
Query: 74  CIHND---IFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKL 130
            +  +      +    + T+ L        E   +    + + V E   N+ +DIAL++L
Sbjct: 121 VVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRL 180
Query: 131 SRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI 188
             P       V  +CL  T +D   ++     + +GWGR + K D   +L+  R+P+  +
Sbjct: 181 KDPVKM-GPTVSPICLPGTSSDYNLMDGDLGLI-SGWGRTE-KRDRAVRLKAARLPVAPL 237
Query: 189 SVCRD-------KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPL--QCSLKDGRWYLAG 239
             C++          ++       +C G   G   +C GDSGG    Q      ++Y AG
Sbjct: 238 RKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMD-SCKGDSGGAFAVQDPNDKTKFYAAG 296
Query: 240 ITSFG 244
           + S+G
Sbjct: 297 LVSWG 301

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           AL++L  P       V  +CL  T +D   ++     + +GWGR + K D   +L+  R+
Sbjct: 176 ALVRLKDPVKM-GPTVSPICLPGTSSDYNLMDGDLGLI-SGWGRTE-KRDRAVRLKAARL 232
Query: 343 PLHNISVCRD-------KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPL--QCSLKDGR 393
           P+  +  C++          ++       +C G   G   +C GDSGG    Q      +
Sbjct: 233 PVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMD-SCKGDSGGAFAVQDPNDKTK 291
Query: 394 WYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +Y AG+ S+G  C   G   +YT++  Y+ WI K +
Sbjct: 292 FYAAGLVSWGPQCGTYG---LYTRVKNYVDWIMKTM 324

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           L++G    + + P+Q +L      L      CG VLIHP WV+TAAHC   ++       
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLL------CGGVLIHPLWVLTAAHCKKPNL------- 47
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHH--DIALLKLSRPTSARDKGVRAV 144
                LG  +  ++E S+ +  V R  +H ++    H  DI LL+L+RP    +      
Sbjct: 48  --QVFLGKHNLGQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLP 105
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
              D   +  +    C   GWG+    GD    ++   + L +   C   Y   +  +  
Sbjct: 106 LERDCSAQTTS----CHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHAYPGQITQN-- 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            LC G       +C GDSGGPL C       +L G+ S+G+  CG
Sbjct: 159 MLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCG 198

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 345
           LL+L+RP    +         D   +  +    C   GWG+    GD    ++   + L 
Sbjct: 88  LLRLARPAKLSELIQPLPLERDCSAQTTS----CHILGWGKTA-DGDFPDTIQCAYIHLV 142
Query: 346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS- 404
           +   C   Y   +  +   LC G       +C GDSGGPL C       +L G+ S+G+ 
Sbjct: 143 SREECEHAYPGQITQN--MLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNI 195
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
            C     P VYT +  Y  WI+K I 
Sbjct: 196 PCGSKEKPGVYTNVCRYTNWIQKTIQ 221

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 23/198 (11%)
Query: 57  WCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLG-DWDRTEEEKSEVRIPVERIRV- 114
           +CG  LI+  WV+TAAHC   +         +   LG    +   E  + R+P E+    
Sbjct: 27  FCGGTLINQEWVLTAAHCDRKN---------FRIKLGMHSKKVPNEDEQTRVPKEKFFCL 77
Query: 115 -HEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KG 172
             + +  +  DI L++L  P     K  + +        P +    C   GWGR+ P +G
Sbjct: 78  SSKNYTLWDKDIMLIRLDSPV----KNSKHIAPFSLPSSPPSVGSVCRIMGWGRISPTEG 133
Query: 173 DLVSKLRQIRVPLHNISVCRDKYGD-SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 231
                   + + L    +CR  Y +  +      LC G L+G    C GDSGGPL C+ +
Sbjct: 134 TYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNGQ 193
Query: 232 DGRWYLAGITSFGSGYCG 249
                  GI S+G   C 
Sbjct: 194 -----FQGIASWGDDPCA 206

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 319 CVATGWGRVKP-KGDLVSKLRQIRVPLHNISVCRDKYGD-SVELHGGHLCGGQLDGFSGA 376
           C   GWGR+ P +G        + + L    +CR  Y +  +      LC G L+G    
Sbjct: 120 CRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDT 179
Query: 377 CIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQI 429
           C GDSGGPL C+ +       GI S+G   CA+   P  YTK+  +L WI   I
Sbjct: 180 CKGDSGGPLICNGQ-----FQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 95/234 (40%), Gaps = 32/234 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++    +P+  S+Q          H+CG  LIH  +V+TAA C     F    P 
Sbjct: 1   IVGGRKARPRQFPFLASIQ------NQGRHFCGGALIHARFVMTAASC-----FQSQNPG 49
Query: 87  LWTAVLGDWD-RTEEEKSEVRIPVERIRVH-EEFHNYHHDIALLKLSRPTSARDK-GVRA 143
           + T VLG +D R  E +S     +  +  +  +     +D+ LL+L R  +      +  
Sbjct: 50  VSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILP 109
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           + L +A    V    +C   GWG  +  G L    R + V +     CR           
Sbjct: 110 LPLQNAT---VEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN--------- 157
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
            ++C G L    G C GD G PL C          G+ SF  G CG G  +  R
Sbjct: 158 -NVCTGVLTRRGGICNGDQGTPLVCE-----GLAHGVASFSLGPCGRGPDFFTR 205

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 87/244 (35%), Gaps = 53/244 (21%)
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG------ 251
           S++  G H CGG                   +L   R+ +   + F S   GV       
Sbjct: 17  SIQNQGRHFCGG-------------------ALIHARFVMTAASCFQSQNPGVSTVVLGA 57
Query: 252 --IRYSHRQPRLINGKESI--RGAWPWQNLITSFLSAALLKLSRPTSARDK-GVRAVCLT 306
             +R   RQ R      S+   G  P QNL        LL+L R  +      +  + L 
Sbjct: 58  YDLRRRERQSRQTFSISSMSENGYDPQQNLN----DLMLLQLDREANLTSSVTILPLPLQ 113
Query: 307 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 366
           +A    V    +C   GWG  +  G L    R + V +     CR            ++C
Sbjct: 114 NAT---VEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN----------NVC 160
Query: 367 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            G L    G C GD G PL C          G+ SF  G    G PD +T+++ +  WI 
Sbjct: 161 TGVLTRRGGICNGDQGTPLVCE-----GLAHGVASFSLGPCGRG-PDFFTRVALFRDWID 214
Query: 427 KQIN 430
             +N
Sbjct: 215 GVLN 218

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 22/229 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+++  G +PWQV   + H R        G  L+   W++TAAH ++          
Sbjct: 1   IIGGQKAKMGNFPWQVFTNI-HGR-------GGGALLGDRWILTAAHTLYPKEHEAQSNA 52
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVH-----EEFHNYHHDIALLKLSRPTSARDKGV 141
                LG     EE       P+ R+ VH     +E +N+  DIALL+L    +     +
Sbjct: 53  SLDVFLGH-TNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTL-GPNL 110
Query: 142 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD--KYGDSV 199
             +CL D D    +       +G+G ++ K  +   LR +R+P+ N   C +  +  + +
Sbjct: 111 LPICLPDNDTF-YDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNRM 167
Query: 200 ELHGGHL-CGGQLDGFSGACIGDSGGPLQC-SLKDGRWYLAGITSFGSG 246
           ++   ++ C G       AC GDSGG          RW   GI S+G G
Sbjct: 168 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG 216

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L    +     +  +CL D D    +       +G+G ++ K  +   LR +R+P+
Sbjct: 96  ALLELENSVTL-GPNLLPICLPDNDTF-YDLGLMGYVSGFGVMEEK--IAHDLRFVRLPV 151
Query: 345 HNISVCRD--KYGDSVELHGGHL-CGGQLDGFSGACIGDSGGPLQC-SLKDGRWYLAGIT 400
            N   C +  +  + +++   ++ C G       AC GDSGG          RW   GI 
Sbjct: 152 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIV 211
Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           S+G GC++ GY   YTK+  Y+ WI+K++
Sbjct: 212 SWGIGCSR-GY-GFYTKVLNYVDWIKKEM 238

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 95/234 (40%), Gaps = 32/234 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++    +P+  S+Q          H+CG  LIH  +V+TAA C     F    P 
Sbjct: 1   IVGGRKARPRQFPFLASIQ------NQGRHFCGGALIHARFVMTAASC-----FQSQNPG 49
Query: 87  LWTAVLGDWD-RTEEEKSEVRIPVERIRVH-EEFHNYHHDIALLKLSRPTSARDK-GVRA 143
           + T VLG +D R  E +S     +  +  +  +     +D+ LL+L R  +      +  
Sbjct: 50  VSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILP 109
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           + L +A    V    +C   GWG  +  G L    R + V +     CR           
Sbjct: 110 LPLQNAT---VEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN--------- 157
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
            ++C G L    G C GD G PL C          G+ SF  G CG G  +  R
Sbjct: 158 -NVCTGVLTRRGGICNGDGGTPLVCE-----GLAHGVASFSLGPCGRGPDFFTR 205

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 87/244 (35%), Gaps = 53/244 (21%)
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG------ 251
           S++  G H CGG                   +L   R+ +   + F S   GV       
Sbjct: 17  SIQNQGRHFCGG-------------------ALIHARFVMTAASCFQSQNPGVSTVVLGA 57
Query: 252 --IRYSHRQPRLINGKESI--RGAWPWQNLITSFLSAALLKLSRPTSARDK-GVRAVCLT 306
             +R   RQ R      S+   G  P QNL        LL+L R  +      +  + L 
Sbjct: 58  YDLRRRERQSRQTFSISSMSENGYDPQQNLN----DLMLLQLDREANLTSSVTILPLPLQ 113
Query: 307 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 366
           +A    V    +C   GWG  +  G L    R + V +     CR            ++C
Sbjct: 114 NAT---VEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN----------NVC 160
Query: 367 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            G L    G C GD G PL C          G+ SF  G    G PD +T+++ +  WI 
Sbjct: 161 TGVLTRRGGICNGDGGTPLVCE-----GLAHGVASFSLGPCGRG-PDFFTRVALFRDWID 214
Query: 427 KQIN 430
             +N
Sbjct: 215 GVLN 218

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 335 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW 394
           S L+ ++ P+ + S C+  Y    ++ G  +C G L+G   +C GDSGGP+ C+ +    
Sbjct: 8   SLLQCLKAPVLSDSSCKSSYPG--QITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ---- 61
Query: 395 YLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            L GI S+G GCA+   P VYTK+  Y+ WI++ I
Sbjct: 62  -LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 95

>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein (Cap37) Length = 225

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 94/234 (40%), Gaps = 32/234 (13%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G+++    +P+  S+Q          H CG  LIH  +V+TAA C     F    P 
Sbjct: 1   IVGGRKARPRQFPFLASIQ------NQGSHECGGALIHARFVMTAASC-----FQSQNPG 49
Query: 87  LWTAVLGDWD-RTEEEKSEVRIPVERIRVH-EEFHNYHHDIALLKLSRPTSARDK-GVRA 143
           + T VLG +D R  E +S     +  +  +  +     +D+ LL+L R  +      +  
Sbjct: 50  VSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILP 109
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           + L +A    V    +C   GWG  +  G L    R + V +     CR           
Sbjct: 110 LPLQNAT---VEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN--------- 157
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
            ++C G L    G C GD G PL C          G+ SF  G CG G  +  R
Sbjct: 158 -NVCTGVLTRRGGICNGDGGTPLVCE-----GLAHGVASFSLGPCGRGPDFFTR 205

>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein (Cap37) Length = 225

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 87/244 (35%), Gaps = 53/244 (21%)
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG------ 251
           S++  G H CGG                   +L   R+ +   + F S   GV       
Sbjct: 17  SIQNQGSHECGG-------------------ALIHARFVMTAASCFQSQNPGVSTVVLGA 57
Query: 252 --IRYSHRQPRLINGKESI--RGAWPWQNLITSFLSAALLKLSRPTSARDK-GVRAVCLT 306
             +R   RQ R      S+   G  P QNL        LL+L R  +      +  + L 
Sbjct: 58  YDLRRRERQSRQTFSISSMSENGYDPQQNLN----DLMLLQLDREANLTSSVTILPLPLQ 113
Query: 307 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 366
           +A    V    +C   GWG  +  G L    R + V +     CR            ++C
Sbjct: 114 NAT---VEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN----------NVC 160
Query: 367 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
            G L    G C GD G PL C          G+ SF  G    G PD +T+++ +  WI 
Sbjct: 161 TGVLTRRGGICNGDGGTPLVCE-----GLAHGVASFSLGPCGRG-PDFFTRVALFRDWID 214
Query: 427 KQIN 430
             +N
Sbjct: 215 GVLN 218

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 335 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW 394
           S L+ ++ P+ + S C+  Y    ++ G  +C G L G   +C GDSGGP+ C+ +    
Sbjct: 8   SLLQCLKAPVLSNSSCKSSYPG--QITGNMICVGFLQGGKDSCQGDSGGPVVCNGQ---- 61
Query: 395 YLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            L GI S+G GCA+   P VYTK+  Y+ WI++ I
Sbjct: 62  -LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 95

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 99/227 (43%), Gaps = 36/227 (15%)
Query: 57  WCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHE 116
           +C   LI+  WV+TAAHC  N  F + +      VL + ++T   K +   P ++   ++
Sbjct: 25  FCSGTLINEEWVLTAAHC-DNTNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKK---ND 80
Query: 117 EFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS 176
           E  +   DI L+KL    S  +  V           P +    C   GWG + P      
Sbjct: 81  EVLD--KDIMLIKLDSRVSNSEHIVPLS----LPSSPPSVGSVCHIMGWGSITP-----I 129
Query: 177 KLRQIRVP------LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL 230
           K+    VP      L + +VC+  Y + +  +   LC G L+G    C GDSGGPL C+ 
Sbjct: 130 KVTYPDVPYCAYINLLDDAVCQAGYPELLTEYR-TLCAGILEGGKDTCGGDSGGPLICNG 188
Query: 231 KDGRWYLAGITSFGSGYCGVGIR---------YSHRQPRLINGKESI 268
           +       GI SFG+  CG G++         Y+H    +I G  ++
Sbjct: 189 Q-----FQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGNTTV 230

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 319 CVATGWGRVKPKGDLVSKLRQIRVP------LHNISVCRDKYGDSVELHGGHLCGGQLDG 372
           C   GWG + P      K+    VP      L + +VC+  Y + +  +   LC G L+G
Sbjct: 118 CHIMGWGSITP-----IKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYR-TLCAGILEG 171
Query: 373 FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQI 429
               C GDSGGPL C+ +       GI SFG+  C +   P VYTK+  Y  WI+  I
Sbjct: 172 GKDTCGGDSGGPLICNGQ-----FQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSII 224

>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP Length = 234

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LLKL R  +   + V  +CL   +   V P  +C   GWG  K  G+       + V L
Sbjct: 87  VLLKLERSVTLNQR-VALICL-PPEWYVVPPGTKCEIAGWGETKGTGNDTV----LNVAL 140
Query: 345 HNI---SVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            N+     C  K+   V      +C   L    GAC GD GGPL C      W L GI  
Sbjct: 141 LNVISNQECNIKHRGRVR--ESEMCTEGLLAPVGACEGDYGGPLAC-FTHNSWVLEGIII 197
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQINI 431
               CA+S +P V+T++S ++ WI K + +
Sbjct: 198 PNRVCARSRWPAVFTRVSVFVDWIHKVMRL 227

>pdb|2RDL|A Chain A, Hamster Chymase 2 Length = 226

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 26/238 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G E    A P+   L+++ P   L    C   LI  ++V+TAAHC    I       
Sbjct: 1   IIGGTECRPHARPYMAYLEIVTPENHL--SACSGFLIRRNFVMTAAHCAGRSI------- 51
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAV 144
             T +LG  ++  +E +  ++ VE+   H ++ +    +DI LLKL    +    GV  +
Sbjct: 52  --TVLLGAHNKKVKEDTWQKLEVEKQFPHPKYDDRLVLNDIMLLKLKEKANL-TLGVGTL 108
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            ++ A    + P + C A GWGR          L+++++ + +   C+       E    
Sbjct: 109 PIS-AKSNSIPPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACKHFEDFHQE---P 164
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF---GSGYCGVGIRYSHRQP 259
            LC G          GDSGGPL C+         GI S+    +    V  R SH +P
Sbjct: 165 QLCVGNPKKIRNVYKGDSGGPLLCA-----GIAQGIASYVLRNAKPPSVFTRISHYRP 217

>pdb|2RDL|A Chain A, Hamster Chymase 2 Length = 226

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 308 ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCG 367
           A    + P + C A GWGR          L+++++ + +   C+       E     LC 
Sbjct: 112 AKSNSIPPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACKHFEDFHQE---PQLCV 168
Query: 368 GQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
           G          GDSGGPL C+         GI S+    AK   P V+T++S Y PWI K
Sbjct: 169 GNPKKIRNVYKGDSGGPLLCA-----GIAQGIASYVLRNAKP--PSVFTRISHYRPWINK 221

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 395
           +L+Q  +PL + + C+  +G   ++    +C G   G S +C+GDSGGPL C  K+G W 
Sbjct: 5   RLQQASLPLLSNTNCKKYWG--TKIKDAMICAGA-SGVS-SCMGDSGGPLVCK-KNGAWT 59
Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           L GI S+GS    +  P VY +++  + W+++ +
Sbjct: 60  LVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 93

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 87/208 (41%), Gaps = 20/208 (9%)
Query: 43  SLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEK 102
           SL VL    G +   CG  LI+  WVVTAAHC  N+ F L        +L + ++T + K
Sbjct: 14  SLVVLFNSNGFL---CGGTLINQDWVVTAAHCDSNN-FQLLFGVHSKKILNEDEQTRDPK 69
Query: 103 SEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVA 162
            +   P  R +  E       DI L+KL    S  +     +        P +    C  
Sbjct: 70  EKFFCP-NRKKDDE----VDKDIMLIKLDSSVSNSEH----IAPLSLPSSPPSVGSVCRI 120
Query: 163 TGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGD 221
            GWG+  P  ++   +     + + + +VCR  Y    ++    LC G L G    C  D
Sbjct: 121 MGWGKTIPTKEIYPDVPHCANINILDHAVCRTAYS-WRQVANTTLCAGILQGGRDTCHFD 179
Query: 222 SGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           SGGPL C+         GI S+G   CG
Sbjct: 180 SGGPLICN-----GIFQGIVSWGGHPCG 202

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 319 CVATGWGRVKPKGDLVSKLRQ-IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
           C   GWG+  P  ++   +     + + + +VCR  Y    ++    LC G L G    C
Sbjct: 118 CRIMGWGKTIPTKEIYPDVPHCANINILDHAVCRTAYS-WRQVANTTLCAGILQGGRDTC 176
Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQI 429
             DSGGPL C+         GI S+G   C + G P VYTK+  YL WI+  I
Sbjct: 177 HFDSGGPLICN-----GIFQGIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSII 224

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL++P       +    L  A     N     VA GWG  +  G     L +  VP 
Sbjct: 91  ALIKLAQP-------INQPTLKIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPF 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLD-GFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
            + + CR      + +    +C G  D G    C GDSGGP+        W   GI S+G
Sbjct: 143 VSDAACRSS-SSFILVANEMICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWG 201
Query: 404 SGCAKSGYPDVYTKLSFYLPWI 425
            GCA+ GYP VYT++S +   I
Sbjct: 202 YGCARPGYPGVYTEVSTFASAI 223

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G ++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +     E
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTE 56
Query: 87  LWTAV-LGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKGV 141
               V +G   RT  E++  +I + E+I +H  ++   N   DIAL+KL +P +  D  +
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-I 115
Query: 142 RAVCLTDADKRP--VNPKQQCVATGWGRVK 169
             VCL D +     +    +   TGWG +K
Sbjct: 116 HPVCLPDRETAASLLQAGYKGRVTGWGNLK 145

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 336 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 395
           +L+Q  +PL + + C+  +G  ++     +C G   G S +C+GDSGGPL C  K+G W 
Sbjct: 6   RLQQASLPLLSNTNCKKYWGTKIK--DAMICAGA-SGVS-SCMGDSGGPLVCK-KNGAWT 60
Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           L GI S+GS    +  P VY +++  + W+++ +
Sbjct: 61  LVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 88/222 (39%), Gaps = 22/222 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  + +G +P+ V L +     G    +CG  L     V+TAAHC+     +  I  
Sbjct: 1   VVGGTRAAQGEFPFMVRL-INEENEG----FCGGALYAQDIVLTAAHCVSGSGNNTSI-- 53
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
             TA  G  D   +  S V++   ++     F    Y  D AL+KL++P       +   
Sbjct: 54  --TATGGVVDL--QSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQP-------INQP 102
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  A     N     VA GWG  +  G     L +  VP  + + CR      + +   
Sbjct: 103 TLKIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPFVSDAACRSS-SSFILVANE 160
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C G        C GDSGGP+        W   GI S+G G
Sbjct: 161 MICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEG 202

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL++P       +    L  A     N     VA GWG  +  G     L +  VP 
Sbjct: 91  ALIKLAQP-------INQPTLKIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPF 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + CR      + +    +C G        C GDSGGP+        W   GI S+G 
Sbjct: 143 VSDAACRSS-SSFILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGE 201
Query: 405 GCAKSGYPDVYTKLSFYLPWI 425
           GCA+ G   VYT++S +   I
Sbjct: 202 GCARKGKYGVYTEVSTFASAI 222

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 93/220 (42%), Gaps = 24/220 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ES   + P+   LQ+  P        CG  L+   +V+TAAHC  ++I       
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSP---AGQSRCGGFLVREDFVLTAAHCWGSNI------- 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAV 144
                LG  +    E ++  I   R   H +++     +DI LL+LS     R++ V  V
Sbjct: 51  --NVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLS-RRVRRNRNVNPV 107
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  A +  + P   C   GWGRV  +      LR++++ +     C   +G        
Sbjct: 108 ALPRAQE-GLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFGSYDPRR-- 163
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
            +C G       A  GDSGGPL C+         GI S+G
Sbjct: 164 QICVGDRRERKAAFKGDSGGPLLCN-----NVAHGIVSYG 198

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 313 VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDG 372
           + P   C   GWGRV  +      LR++++ +     C   +G         +C G    
Sbjct: 116 LRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFGSYDPRR--QICVGDRRE 172
Query: 373 FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
              A  GDSGGPL C+         GI S+G        P+V+T++S +LPWIR  +
Sbjct: 173 RKAAFKGDSGGPLLCN-----NVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222

>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity Length = 224

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 86/222 (38%), Gaps = 27/222 (12%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G  + +G +P+ V L +           CG  L     V+TAAHC+     +  I  
Sbjct: 1   VVGGTRAAQGEFPFMVRLSM----------GCGGALYAQDIVLTAAHCVSGSGNNTSI-- 48
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
             TA  G  D   +  S V++   ++     F    Y  D AL+KL++P       +   
Sbjct: 49  --TATGGVVDL--QSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQP-------INQP 97
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  A     N     VA GWG  +  G     L +  VP  + + CR      + +   
Sbjct: 98  TLKIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPFVSDAACRSS-SSFILVANE 155
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            +C G        C GDSGGP+        W   GI S+G G
Sbjct: 156 MICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEG 197

>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity Length = 224

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL++P       +    L  A     N     VA GWG  +  G     L +  VP 
Sbjct: 86  ALIKLAQP-------INQPTLKIATTTAYNQGTFTVA-GWGANREGGSQQRYLLKANVPF 137
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + CR      + +    +C G        C GDSGGP+        W   GI S+G 
Sbjct: 138 VSDAACRSS-SSFILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGE 196
Query: 405 GCAKSGYPDVYTKLSFYLPWI 425
           GCA+ G   VYT++S +   I
Sbjct: 197 GCARKGKYGVYTEVSTFASAI 217

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 24/220 (10%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I G+ES   + P+   LQ+  P        CG  L+   +V+TAAHC  ++I       
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSP---AGQSRCGGFLVREDFVLTAAHCWGSNI------- 50
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
                LG  +    E ++  I   R   H +++     +DI LL+LSR    R++ V  V
Sbjct: 51  --NVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSR-RVRRNRNVNPV 107
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L  A +  + P   C   GWGRV  +      LR++++ +     C   +G        
Sbjct: 108 ALPRAQE-GLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFGSYDPRR-- 163
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
            +C G       A  GDSGGPL C+         GI S+G
Sbjct: 164 QICVGDRRERKAAFKGDSGGPLLCN-----NVAHGIVSYG 198

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 313 VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDG 372
           + P   C   GWGRV  +      LR++++ +     C   +G         +C G    
Sbjct: 116 LRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFGSYDPRR--QICVGDRRE 172
Query: 373 FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
              A  GDSGGPL C+         GI S+G        P+V+T++S +LPWIR  +
Sbjct: 173 RKAAFKGDSGGPLLCN-----NVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            L+KL+RP +  D  V  + L +     +  K  C   GWG      +    LR   + +
Sbjct: 86  VLMKLARP-AVLDDFVSTIDLPNYGST-IPEKTSCSVYGWGYTGLI-NYDGLLRVAHLYI 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C   +   V L+   +C G     SG C GD GGPL C     R  L G+   G 
Sbjct: 143 MGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVL-GVIVPGR 201
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA    P ++ ++++Y  WI K I
Sbjct: 202 GCAIPNRPGIFVRVAYYAKWIHKII 226

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            L+KL+RP +  D  V  + L +     +  K  C   GWG      +    LR   + +
Sbjct: 86  VLMKLARP-AVLDDFVSTIDLPNYGST-IPEKTSCSVYGWGYTGLI-NYDGLLRVAHLYI 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C   +   V L+   +C G     SG C GD GGPL C     R  L G+   G 
Sbjct: 143 MGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVL-GVIVPGR 201
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA    P ++ ++++Y  WI K I
Sbjct: 202 GCAIPNRPGIFVRVAYYAKWIHKII 226

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 95/238 (39%), Gaps = 41/238 (17%)
Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIH----NDIFS 81
           R++ G    +G++PWQ  + + H  L       GA LI+  W++T A  +     ND  +
Sbjct: 102 RIMGGSLDAKGSFPWQAKM-ISHHNLT-----SGATLINEQWLLTTAKNLRLGHKNDTKA 155
Query: 82  LPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGV 141
             I       +G       +K EV I  E++  H +  N   DI L+KL +     ++ V
Sbjct: 156 KDIAPTLRLYVG-------KKQEVEI--EKVIFHPD--NSTVDIGLIKLKQKVPVNER-V 203
Query: 142 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY-GDSVE 200
             +CL   D   VN       +GWGR     +    L+ + +P+ +   C   Y G +V 
Sbjct: 204 MPICLPSKDY--VNVGLVGYVSGWGR-NANLNFTEHLKYVMLPVADQEKCVQYYEGSTVP 260
Query: 201 --------------LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDG-RWYLAGITSF 243
                         L+    C G        C GD+G       KD   WY AGI SF
Sbjct: 261 EKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSF 318

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 21/167 (12%)
Query: 279 TSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLR 338
            S +   L+KL +     ++ V  +CL   D   VN       +GWGR     +    L+
Sbjct: 183 NSTVDIGLIKLKQKVPVNER-VMPICLPSKDY--VNVGLVGYVSGWGR-NANLNFTEHLK 238
Query: 339 QIRVPLHNISVCRDKY-GDSVE--------------LHGGHLCGGQLDGFSGACIGDSGG 383
            + +P+ +   C   Y G +V               L+    C G        C GD+G 
Sbjct: 239 YVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGS 298
Query: 384 PLQCSLKDG-RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
                 KD   WY AGI SF   C  + Y  VY +++  L WI+  I
Sbjct: 299 AFAVHDKDDDTWYAAGILSFDKSCRTAEY-GVYVRVTSILDWIQTTI 344

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF--SLPI 84
           ++ G+++  G  PWQV L    P+  L    CGA LI   WV+TAAHC+    +  +  +
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELL----CGASLISDRWVLTAAHCLLYPPWDKNFTV 56
Query: 85  PELWTAVLGDWDRTEEEKSEVRIPV-ERIRVHEEFH---NYHHDIALLKLSRPTSARDKG 140
            +L   + G   RT  E+   +I + ++I +H  ++   N   DIALLKL RP    D  
Sbjct: 57  DDLLVRI-GKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDY- 114
Query: 141 VRAVCLTDADK--RPVNPKQQCVATGWG 166
           +  VCL D     + ++   +   TGWG
Sbjct: 115 IHPVCLPDKQTAAKLLHAGFKGRVTGWG 142

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 78/199 (39%), Gaps = 31/199 (15%)
Query: 58  CGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR-IPVERIRVHE 116
           CG  LI+  WV+TA HC   ++            LG  +     K  +R  P E+     
Sbjct: 25  CGGTLINQEWVLTARHCDRGNM---------RIYLGMHNLKVLNKDALRRFPKEKYFCLN 75
Query: 117 EFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQ---CVATGWGRV-KP 170
             ++  +  DI L++L+RP       VR          P NP      C   GWG +  P
Sbjct: 76  TRNDTIWDKDIMLIRLNRP-------VRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSP 128
Query: 171 KGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL 230
              L        + + + +VC+  Y     L    LC G L+G    C GDSGGPL C+ 
Sbjct: 129 NATLPDVPHCANINILDYAVCQAAYKG---LAATTLCAGILEGGKDTCKGDSGGPLICNG 185
Query: 231 KDGRWYLAGITSFGSGYCG 249
           +       GI S G   C 
Sbjct: 186 Q-----FQGILSVGGNPCA 199

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 286 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQ---CVATGWGRV-KPKGDLVSKLRQIR 341
           L++L+RP       VR          P NP      C   GWG +  P   L        
Sbjct: 88  LIRLNRP-------VRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCAN 140
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
           + + + +VC+  Y     L    LC G L+G    C GDSGGPL C+ +       GI S
Sbjct: 141 INILDYAVCQAAYKG---LAATTLCAGILEGGKDTCKGDSGGPLICNGQ-----FQGILS 192
Query: 402 FGSG-CAKSGYPDVYTKLSFYLPWIRKQINIAVD 434
            G   CA+   P +YTK+  Y  WI+  I+   D
Sbjct: 193 VGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNTD 226

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 31/199 (15%)
Query: 58  CGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVER-IRVHE 116
           C   LI+  WV+TAAHC   +I       +   +     R E+E  ++R+P  +   ++ 
Sbjct: 28  CAGALINREWVLTAAHCDRRNI------RIKLGMHSKNIRNEDE--QIRVPRGKYFCLNT 79
Query: 117 EFHN-YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV 175
           +F N    DI L++L RP +        +       R      +C   GWG++       
Sbjct: 80  KFPNGLDKDIMLIRLRRPVTYSTH----IAPVSLPSRSRGVGSRCRIMGWGKI------- 128
Query: 176 SKLRQIRVP-LHNISVCRDKYGDS----VELHGGHLCGGQLDGFSGACIGDSGGPLQCSL 230
           S      VP   NI + + K+ +     V      LC G L G    C GDSGGPL C+ 
Sbjct: 129 STTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDSGGPLICNG 188
Query: 231 KDGRWYLAGITSFGSGYCG 249
           +     + GI + GS  CG
Sbjct: 189 E-----MHGIVAGGSEPCG 202

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 317 QQCVATGWGRVKPKGDLVSKLRQIRVP-LHNISVCRDKYGDS----VELHGGHLCGGQLD 371
            +C   GWG++       S      VP   NI + + K+ +     V      LC G L 
Sbjct: 118 SRCRIMGWGKI-------STTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILK 170
Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQI 429
           G    C GDSGGPL C+ +     + GI + GS  C +   P VYTK+  Y  WI+  I
Sbjct: 171 GGRDTCHGDSGGPLICNGE-----MHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSII 224

>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of The Porcine Alpha Trypsin Length = 125

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 22/145 (15%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           ++ G      + P+QVSL           H+CG  LI+  WVV+AAHC  + I       
Sbjct: 1   IVGGYTCAANSIPYQVSLNS-------GSHFCGGSLINSQWVVSAAHCYKSRI------- 46
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
                LG+ +    E +E  I   +I  H  F  +   +DI L+KLS P +   +    V
Sbjct: 47  --QVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSR----V 100
Query: 145 CLTDADKRPVNPKQQCVATGWGRVK 169
                 +       +C+ +GWG  K
Sbjct: 101 ATVSLPRSCAAAGTECLISGWGNTK 125

>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor Length = 102

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 335 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLK 390
           S L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  
Sbjct: 4   SVLQVVNLPIVERPVCKDS--TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 61
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           + RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 62  NNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 101

>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin Length = 105

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 335 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL--DGFSG-ACIGDSGGPL-QCSLK 390
           S L+ + +P+    VC+D     + +     C G    +G  G AC GDSGGP    S  
Sbjct: 4   SVLQVVNLPIVERPVCKDS--TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 61
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           + RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 62  NNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 101

>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 109

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 335 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS---GACIGDSGGPL-QCSLK 390
           S L+ + +PL    VC  K    + +     C G   G      AC GDSGGP    S  
Sbjct: 8   SVLQVVNLPLVERPVC--KASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPY 65
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           + RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 66  NNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 105

>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-I1 (Smipp-S-I1) Length = 228

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 28/195 (14%)
Query: 39  PWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHND-----IFSLPIPELWTAVLG 93
           PW V+++       L    CG  ++   +V+TAAHC+ +      +       LW     
Sbjct: 12  PWTVAVRTYPGEESLT---CGGAILSQWFVLTAAHCVFDQKPETIVIQYESTNLWE---- 64
Query: 94  DWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRP 153
           D  +++   S V +   R    E      +DIA+L+LSRP        +   L D + RP
Sbjct: 65  DPGKSDPYVSHVYLSFYRQETME------NDIAILELSRPLKLDGLKSKPAKLPDIEFRP 118
Query: 154 VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD---SVELHGGHLCGGQ 210
                  + +G+G  +        L+  ++ + ++  CR KYG    S+++      G  
Sbjct: 119 -KTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQKVGVS 177
Query: 211 LDGFSGACIGDSGGP 225
           L+       GD+G P
Sbjct: 178 LES------GDAGDP 186

>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 80

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHND 78
          +I G+E  + + PWQV+  + H         CG VL++P WV+TAAHC +++
Sbjct: 1  IIGGRECEKNSHPWQVA--IYH----YSSFQCGGVLVNPKWVLTAAHCKNDN 46

>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-D1 (Smipp-S-D1) Length = 235

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 25/224 (11%)
Query: 27  LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
           +I GK+S     PW V + V          +CG  ++  ++V+TAA C+         P 
Sbjct: 1   IIGGKKSDITKEPWAVGVLVDEKP------FCGGSILTANFVITAAQCVDG-----TKPS 49
Query: 87  LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCL 146
             +   G   RT +  S +   +  +R H       ++ A+++   P    DK  + + L
Sbjct: 50  DISIHYGSSYRTTKGTSVMAKKIYIVRYHP--LTMQNNYAVIETEMPIKLDDKTTKKIEL 107
Query: 147 TDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKY----GDSVEL 201
                 P  P    + +GWG    K  +    L +    + +   C ++Y     D    
Sbjct: 108 PSLLYDP-EPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIY 166
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 245
            G    GG+ D  +    GD+G P   ++++G   L G+ S+ S
Sbjct: 167 DGVFCAGGEYDE-TYIGYGDAGDP---AVQNGT--LVGVASYIS 204

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	436
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	5e-73
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	5e-40
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	9e-71
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	4e-38
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	4e-70
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	3e-40
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	2e-69
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	8e-39
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	5e-69
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	1e-40
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	8e-69
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	4e-42
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	8e-69
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	5e-42
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	1e-68
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	1e-41
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	3e-68
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	3e-43
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	4e-68
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	4e-39
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	1e-67
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	2e-37
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	1e-67
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	3e-38
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	1e-67
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	1e-41
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	2e-67
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	3e-39
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	7e-67
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	9e-41
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	8e-67
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	1e-42
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	9e-67
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	7e-40
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	1e-66
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	4e-40
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	1e-66
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	6e-40
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	2e-66
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	2e-37
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	2e-66
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	5e-40
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	3e-66
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	9e-38
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	3e-66
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	3e-45
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	1e-65
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	1e-37
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	2e-65
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	9e-40
1aut_C	250	Activated protein C; serine proteinase, plasma cal	2e-65
1aut_C	250	Activated protein C; serine proteinase, plasma cal	2e-38
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	1e-64
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	2e-36
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	1e-64
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	9e-39
1md8_A	329	C1R complement serine protease; innate immunity, a	3e-64
1md8_A	329	C1R complement serine protease; innate immunity, a	3e-33
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	3e-64
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	6e-38
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	3e-64
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	9e-39
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	4e-64
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	1e-39
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	8e-64
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	5e-39
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	2e-63
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	2e-38
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	3e-63
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	2e-37
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	3e-63
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	3e-40
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	4e-63
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	7e-37
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	9e-63
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	2e-34
1gpz_A	399	Complement C1R component; hydrolase, activation, i	9e-63
1gpz_A	399	Complement C1R component; hydrolase, activation, i	1e-32
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	3e-62
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	2e-37
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	3e-62
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	6e-37
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	3e-62
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	4e-37
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	4e-62
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	8e-35
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	6e-62
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	7e-36
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	1e-61
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	7e-37
1a7s_A	225	Heparin binding protein; serine protease homolog,	1e-61
1a7s_A	225	Heparin binding protein; serine protease homolog,	9e-36
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	2e-61
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	2e-35
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	2e-61
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	6e-35
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	3e-61
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	6e-35
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	5e-61
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	1e-34
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	5e-61
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	6e-35
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	1e-60
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	2e-35
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	2e-60
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	9e-35
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	3e-60
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	1e-35
2xrc_A	565	Human complement factor I; immune system, hydrolas	5e-60
2xrc_A	565	Human complement factor I; immune system, hydrolas	3e-37
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	9e-60
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	3e-39
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	1e-59
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	2e-33
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	2e-59
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	2e-39
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	2e-59
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	1e-39
1elv_A	333	Complement C1S component; trypsin-like serin prote	8e-59
1elv_A	333	Complement C1S component; trypsin-like serin prote	1e-33
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	8e-59
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	3e-35
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	9e-59
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	2e-35
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	2e-58
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	7e-34
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	6e-58
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	7e-38
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	1e-57
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	7e-34
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	2e-57
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	3e-35
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	3e-57
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	2e-34
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	7e-57
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	2e-34
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	7e-57
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	1e-34
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	1e-56
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	5e-36
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	2e-56
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	8e-35
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	4e-56
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	8e-33
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	4e-56
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	2e-35
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	8e-56
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	1e-33
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	1e-55
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	3e-33
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	1e-55
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	8e-35
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	1e-55
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	3e-34
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	3e-55
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	6e-34
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	3e-55
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	4e-34
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	5e-55
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	2e-37
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	2e-54
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	2e-33
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	4e-54
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	1e-31
2aiq_A	231	Protein C activator; snake venom serine proteinase	6e-54
2aiq_A	231	Protein C activator; snake venom serine proteinase	3e-32
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	1e-52
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	4e-33
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	9e-52
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	3e-33
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	9e-52
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	1e-32
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	4e-51
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	4e-28
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	1e-50
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	2e-26
3hrz_D	741	Complement factor B; serine protease, glycosilated	5e-46
3hrz_D	741	Complement factor B; serine protease, glycosilated	2e-26
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	2e-40
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	4e-04
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	7e-34
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	2e-27
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	5e-28
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	1e-15
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	6e-24
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	1e-16
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	3e-10
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  228 bits (584), Expect = 5e-73
 Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 17/240 (7%)

Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG  I   +   R++ G+++I  +WPWQ+SLQ L        H CG  LI P+ V+TAAH
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWR--HTCGGTLITPNHVLTAAH 58

Query: 74  CIHNDIFSLPIPELWTAVLGDWDR-TEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKL 130
           CI N          +   LG  +   E+E   + + V+ I VHE+++     +DIAL+KL
Sbjct: 59  CISN-------TLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKL 111

Query: 131 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV 190
           +      D  ++  CL       +     C  TGWGR+   G + ++L+Q   P+ + + 
Sbjct: 112 AETVELGDT-IQVACLPSEGS-LLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYAT 169

Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
           C  +      +    +C G  DG   AC GDSGGPL C   DG+W + GI SFGSG  C 
Sbjct: 170 CSQRDWWGTTVKETMVCAG-GDGVISACNGDSGGPLNC-QADGQWDVRGIVSFGSGLSCN 227

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  142 bits (361), Expect = 5e-40
 Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 6/149 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL+      D  ++  CL       +     C  TGWGR+   G + ++L+Q   P+
Sbjct: 107 ALIKLAETVELGDT-IQVACLPSEGS-LLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPV 164

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + C  +      +    +C G  DG   AC GDSGGPL C   DG+W + GI SFGS
Sbjct: 165 VDYATCSQRDWWGTTVKETMVCAG-GDGVISACNGDSGGPLNC-QADGQWDVRGIVSFGS 222

Query: 405 G--CAKSGYPDVYTKLSFYLPWIRKQINI 431
           G  C     P V+T++S Y+ WI +++ +
Sbjct: 223 GLSCNTFKKPTVFTRVSAYIDWINQKLQL 251

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  220 bits (564), Expect = 4e-70
 Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 17/227 (7%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+++   +WPWQVSLQ      G   H CG  L+  SWV+TAAHCI +          
Sbjct: 2   VGGEDARPNSWPWQVSLQY--DSSGQWRHTCGGTLVDQSWVLTAAHCISS-------SRT 52

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRA 143
           +  VLG    +  E   + + V ++ VH++++    +  +DIALLKL+ P S  DK ++ 
Sbjct: 53  YRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDK-IQL 111

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
            CL  A    +     C  TGWGR++  G     L+Q ++ + + + C         +  
Sbjct: 112 GCLPAAG-TILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKT 170

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
             +C G  DG   +C GDSGGPL C   +G+W + GI SFGS   C 
Sbjct: 171 NMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCN 216

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  143 bits (362), Expect = 3e-40
 Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 5/147 (3%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALLKL+ P S  DK ++  CL  A    +     C  TGWGR++  G     L+Q ++ +
Sbjct: 95  ALLKLASPVSLTDK-IQLGCLPAAG-TILPNNYVCYVTGWGRLQTNGASPDILQQGQLLV 152

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + C         +    +C G  DG   +C GDSGGPL C   +G+W + GI SFGS
Sbjct: 153 VDYATCSKPGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGS 211

Query: 405 --GCAKSGYPDVYTKLSFYLPWIRKQI 429
             GC     P V+T++S Y+ WI   I
Sbjct: 212 SLGCNYYHKPSVFTRVSNYIDWINSVI 238

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  219 bits (560), Expect = 2e-69
 Identities = 75/234 (32%), Positives = 106/234 (45%), Gaps = 19/234 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
             G  +   + PWQ ++   H R       CG +LI   W+++AAHC          P  
Sbjct: 2   KGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQER----FPPHH 57

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSAR---DKGVR 142
            T +LG   R    + E +  VE+  VH+EF    Y +DIALL+L   +S        VR
Sbjct: 58  LTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVR 117

Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVEL 201
            VCL  AD   +    +C  +G+G+ +      S+ L++  V L+  S C  ++  +  +
Sbjct: 118 TVCLPPAD-LQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTV 176

Query: 202 HGGHLCGGQLDGFSG------ACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
               LC G             AC GDSGGPL C   DGR  L GI S+G G CG
Sbjct: 177 TDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL-NDGRMTLVGIISWGLG-CG 228

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  139 bits (353), Expect = 8e-39
 Identities = 54/155 (34%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 285 ALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
           ALL+L   +S        VR VCL  AD   +    +C  +G+G+ +      S+ L++ 
Sbjct: 98  ALLQLKSDSSRCAQESSVVRTVCLPPAD-LQLPDWTECELSGYGKHEALSPFYSERLKEA 156

Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG------ACIGDSGGPLQCSLKDGRW 394
            V L+  S C  ++  +  +    LC G             AC GDSGGPL C   DGR 
Sbjct: 157 HVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL-NDGRM 215

Query: 395 YLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            L GI S+G GC +   P VYTK++ YL WIR  +
Sbjct: 216 TLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 250

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  218 bits (557), Expect = 5e-69
 Identities = 80/228 (35%), Positives = 111/228 (48%), Gaps = 20/228 (8%)

Query: 29  NGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELW 88
           NG++++  +W WQVSLQ    + G   H CG  LI P WVVTA HCI            +
Sbjct: 1   NGEDAVPYSWSWQVSLQY--EKDGAFHHTCGGSLIAPDWVVTAGHCIST-------SRTY 51

Query: 89  TAVLGDWDRTEEEKSE--VRIPVERIRVHEEFHNY----HHDIALLKLSRPTSARDKGVR 142
             VLG++DR+  E SE  + I    + VH  +++      +DIAL+KLSR     DK V+
Sbjct: 52  QVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDK-VQ 110

Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
              L  A    +  +  C  +GWGR+   G L  KL+Q  +P  +   C       + + 
Sbjct: 111 LANLPPAG-DILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVK 169

Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
              +C G        C GDSGGPL C   DG W + G+TSF S + C 
Sbjct: 170 KTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCN 215

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  143 bits (364), Expect = 1e-40
 Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KLSR     DK V+   L  A    +  +  C  +GWGR+   G L  KL+Q  +P 
Sbjct: 95  ALVKLSRSAQLGDK-VQLANLPPAG-DILPNEAPCYISGWGRLYTGGPLPDKLQQALLPT 152

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C       + +    +C G        C GDSGGPL C   DG W + G+TSF S
Sbjct: 153 VDYEHCSQWDWWGITVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVS 210

Query: 405 --GCAKSGYPDVYTKLSFYLPWIRKQIN 430
             GC     P V+T++S ++ WI + I 
Sbjct: 211 AFGCNTIKKPTVFTRVSAFIDWIDETIA 238

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  217 bits (555), Expect = 8e-69
 Identities = 79/224 (35%), Positives = 113/224 (50%), Gaps = 14/224 (6%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G ES  G WPWQVSLQV   +L    H CG  LI   WV+TAAHC       LP+ ++
Sbjct: 2   VGGTESSWGEWPWQVSLQV---KLTAQRHLCGGSLIGHQWVLTAAHCFDG----LPLQDV 54

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
           W    G  + ++  K      ++ I +H+ +     +HDIAL+KL  P    +   + + 
Sbjct: 55  WRIYSGILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEF-QKPIS 113

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L             C  TGWG  K KG++ + L+++ +PL     C+ +Y D  ++    
Sbjct: 114 LPSKGD-TSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDY-KITQRM 171

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +C G  +G   AC GDSGGPL C   +G W L GITS+G G C 
Sbjct: 172 VCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEG-CA 213

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  148 bits (375), Expect = 4e-42
 Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL  P    +   + + L             C  TGWG  K KG++ + L+++ +PL
Sbjct: 95  ALIKLQAPLEYTEF-QKPISLPSKGD-TSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPL 152

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C+ +Y D  ++    +C G  +G   AC GDSGGPL C   +G W L GITS+G 
Sbjct: 153 VTNEECQKRYQDY-KITQRMVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGE 210

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           GCA+   P VYTK++ Y+ WI ++  
Sbjct: 211 GCARREQPGVYTKVAEYMDWILEKTQ 236

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  217 bits (555), Expect = 8e-69
 Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 14/224 (6%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G  S+RG WPWQV+L           H CG  +I   W++TAAHC +        P++
Sbjct: 2   VGGTASVRGEWPWQVTLHT---TSPTQRHLCGGSIIGNQWILTAAHCFYGV----ESPKI 54

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
                G  +++E ++      V+ I +H+++      +DIALLKL    +  D   R + 
Sbjct: 55  LRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDS-QRPIS 113

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L    +        C  TGWG  K +  + + L++ ++PL     C+ +Y    ++    
Sbjct: 114 LPSKGE-RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH-KITHKM 171

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +C G  +G   AC GDSGGPL C   +  W+L GITS+G G C 
Sbjct: 172 ICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEG-CA 213

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  147 bits (374), Expect = 5e-42
 Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 4/145 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALLKL    +  D   R + L    +        C  TGWG  K +  + + L++ ++PL
Sbjct: 95  ALLKLETTVNYTDS-QRPISLPSKGE-RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPL 152

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C+ +Y    ++    +C G  +G   AC GDSGGPL C   +  W+L GITS+G 
Sbjct: 153 VTNEECQKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGE 210

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+   P VYT +  Y+ WI ++ 
Sbjct: 211 GCAQRERPGVYTNVVEYVDWILEKT 235

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  216 bits (553), Expect = 1e-68
 Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 19/229 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E+    +PWQVS++    R     H+CG  +I+  WVV AAHC+  +      P L
Sbjct: 2   VGGIEARPYEFPWQVSVR----RKSSDSHFCGGSIINDRWVVCAAHCMQGEA-----PAL 52

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
            + V+G+ D +          V+ I V+E +      +D++++K +   +     V  +C
Sbjct: 53  VSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDIN-VGPIC 111

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGG 204
             D     V   ++   +GWG +   G      LR + + +   + C   Y     ++  
Sbjct: 112 APDPANDYVY--RKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSD-TIYDD 168

Query: 205 HLCGGQLDGFSG--ACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
            +C     G +   +C GDSGGPL      G + L GI S+G G C  G
Sbjct: 169 MICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIG-CASG 216

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  146 bits (371), Expect = 1e-41
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 8/149 (5%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
           +++K +   +     V  +C  D     V   ++   +GWG +   G      LR + + 
Sbjct: 93  SVIKTAVAITFDIN-VGPICAPDPANDYVY--RKSQCSGWGTINSGGVCCPAVLRYVTLN 149

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSG--ACIGDSGGPLQCSLKDGRWYLAGITS 401
           +   + C   Y     ++   +C     G +   +C GDSGGPL      G + L GI S
Sbjct: 150 ITTNAFCDAVYTSD-TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVS 208

Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           +G GCA  GYP VY+++ F+  WI   I 
Sbjct: 209 WGIGCAS-GYPGVYSRVGFHAGWITDTIT 236

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  215 bits (551), Expect = 3e-68
 Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 14/226 (6%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDI-FSLPIPE 86
           + G ++  G WPWQVSL  L        H CGA LI P+W+V+AAHC  +D  F    P 
Sbjct: 2   VGGTDADEGEWPWQVSLHALGQG-----HICGASLISPNWLVSAAHCYIDDRGFRYSDPT 56

Query: 87  LWTAVLGDWDRTE-EEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRA 143
            WTA LG  D+++          ++RI  H  F    + +DIALL+L +P       VR 
Sbjct: 57  QWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM-VRP 115

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           + L DA        +    TGWG  +  G     L++  + + N + C +     +    
Sbjct: 116 ISLPDAS-HVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQI--TP 172

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             +C G L G   +C GDSGGPL     DGR + AG+ S+G G C 
Sbjct: 173 RMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDG-CA 217

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  150 bits (382), Expect = 3e-43
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L +P       VR + L DA        +    TGWG  +  G     L++  + +
Sbjct: 99  ALLELEKPAEYSSM-VRPISLPDAS-HVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRV 156

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            N + C +     +      +C G L G   +C GDSGGPL     DGR + AG+ S+G 
Sbjct: 157 INQTTCENLLPQQI--TPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGD 214

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQINI 431
           GCA+   P VYT+L  +  WI++   +
Sbjct: 215 GCAQRNKPGVYTRLPLFRDWIKENTGV 241

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  215 bits (551), Expect = 4e-68
 Identities = 76/240 (31%), Positives = 109/240 (45%), Gaps = 19/240 (7%)

Query: 11  ARDCGV-GIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVV 69
           + DCG   +       R++ G  +   +WPWQVSL+          H+CG  LI P WV+
Sbjct: 1   SFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGM-----HFCGGTLISPEWVL 55

Query: 70  TAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLK 129
           TAAHC+       P P  +  +LG       E     I V R+ +         DIALLK
Sbjct: 56  TAAHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEP----TRKDIALLK 107

Query: 130 LSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS 189
           LS P    DK V   CL   +      + +C  TGWG  +        L++ ++P+    
Sbjct: 108 LSSPAVITDK-VIPACLPSPNYVV-ADRTECFITGWGETQG-TFGAGLLKEAQLPVIENK 164

Query: 190 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           VC      +  +    LC G L G + +C GD+GGPL C  +  ++ L G+TS+G G C 
Sbjct: 165 VCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCF-EKDKYILQGVTSWGLG-CA 222

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  140 bits (354), Expect = 4e-39
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 4/145 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALLKLS P    DK V   CL   +      + +C  TGWG  +        L++ ++P+
Sbjct: 104 ALLKLSSPAVITDK-VIPACLPSPNYVV-ADRTECFITGWGETQG-TFGAGLLKEAQLPV 160

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
               VC      +  +    LC G L G + +C GD+GGPL C  +  ++ L G+TS+G 
Sbjct: 161 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCF-EKDKYILQGVTSWGL 219

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+   P VY ++S ++ WI   +
Sbjct: 220 GCARPNKPGVYVRVSRFVTWIEGVM 244

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  216 bits (552), Expect = 1e-67
 Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 22/245 (8%)

Query: 13  DCGV-GIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
            CG    + +  +PR+I G  S+ G+ PW  ++ +          +C   L+H  WVV+A
Sbjct: 21  ACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIGD-------SFCAGSLVHTCWVVSA 73

Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN---YHHDIALL 128
           AHC  +     P  +  + VLG               +E+   +  +       HD+ L+
Sbjct: 74  AHCFSHS----PPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLI 129

Query: 129 KLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 184
           +L +         + V+ +CL +          +C   GWG +       S  LR+  VP
Sbjct: 130 RLKKKGDRCATRSQFVQPICLPEPGSTFP-AGHKCQIAGWGHLDENVSGYSSSLREALVP 188

Query: 185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
           L     C        ++    LC G  D  S AC GDSGGPL C  K+G  YL GI S+G
Sbjct: 189 LVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWG 247

Query: 245 SGYCG 249
            G CG
Sbjct: 248 DG-CG 251

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  137 bits (346), Expect = 2e-37
 Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 6/150 (4%)

Query: 285 ALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
            L++L +         + V+ +CL +          +C   GWG +       S  LR+ 
Sbjct: 127 VLIRLKKKGDRCATRSQFVQPICLPEPGSTFP-AGHKCQIAGWGHLDENVSGYSSSLREA 185

Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
            VPL     C        ++    LC G  D  S AC GDSGGPL C  K+G  YL GI 
Sbjct: 186 LVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGII 244

Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           S+G GC +   P VYT+++ Y+ WI  +I 
Sbjct: 245 SWGDGCGRLHKPGVYTRVANYVDWINDRIR 274

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  214 bits (548), Expect = 1e-67
 Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 16/230 (6%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G+ +     PW  ++   H R G + + CG  LI P WV++A HC  +     P  E 
Sbjct: 2   IGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHCFIDY----PKKED 56

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSAR---DKG 140
           +   LG        + E++  VE + +H+++      +H+DIALLK+           + 
Sbjct: 57  YIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116

Query: 141 VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSV 199
           ++ + L      P      C  TG+G+      L  + L+   V L +   C+  +    
Sbjct: 117 IQTISLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS 175

Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           E+    LC       + +C GDSGGPL CS   GR  L GI S+G G C 
Sbjct: 176 EVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGRG-CA 223

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  138 bits (349), Expect = 3e-38
 Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 6/149 (4%)

Query: 285 ALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
           ALLK+           + ++ + L      P      C  TG+G+      L  + L+  
Sbjct: 99  ALLKIRSKEGRCAQPSRTIQTISLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMT 157

Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
            V L +   C+  +    E+    LC       + +C GDSGGPL CS   GR  L GI 
Sbjct: 158 VVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIV 216

Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           S+G GCA    P VYT++S +LPWIR   
Sbjct: 217 SWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  216 bits (551), Expect = 1e-67
 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 15/231 (6%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G+++  GAWPW VSLQ+         H CG  L++  W++TAAHC             
Sbjct: 2   IGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIK----KKVTD 57

Query: 88  WTAVLGDWDRTEEEKSEVRIP-----VERIRVHEEF--HNYHHDIALLKLSRPTSARDKG 140
           W  + G  +        V+ P     VE+I +HE++   +  +DIAL+K++ P +     
Sbjct: 58  WRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHF- 116

Query: 141 VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDSV 199
           +   CL      P    Q C   GWG ++      S  L++ RV L ++ +C      + 
Sbjct: 117 IGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNG 176

Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGYCG 249
            +   ++C G  +G    C GDSGGPL C    +  + + GITS+G G C 
Sbjct: 177 RIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVG-CA 226

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  148 bits (375), Expect = 1e-41
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVP 343
           AL+K++ P +     +   CL      P    Q C   GWG ++      S  L++ RV 
Sbjct: 103 ALMKITPPVTCGHF-IGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVD 161

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSF 402
           L ++ +C      +  +   ++C G  +G    C GDSGGPL C    +  + + GITS+
Sbjct: 162 LIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSW 221

Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           G GCA++  P VYT    YL WI  +I 
Sbjct: 222 GVGCARAKRPGVYTSTWSYLNWIASKIG 249

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  225 bits (575), Expect = 2e-67
 Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 15/241 (6%)

Query: 12  RDCGVGIRYSHR-QPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVT 70
           R C +    + + +PR++ G  S+RG WPWQV+L           H CG  +I   W++T
Sbjct: 372 RLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHT---TSPTQRHLCGGSIIGNQWILT 428

Query: 71  AAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALL 128
           AAHC +     +  P++     G  +++E ++      V+ I +H+++      +DIALL
Sbjct: 429 AAHCFYG----VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALL 484

Query: 129 KLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI 188
           KL    +  D   R +CL     R       C  TGWG  K +  + + L++ ++PL   
Sbjct: 485 KLETTVNYTDS-QRPICLPSKGDR-NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTN 542

Query: 189 SVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
             C+ +Y    ++    +C G  +G   AC GDSGGPL C   +  W+L GITS+G G C
Sbjct: 543 EECQKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEG-C 599

Query: 249 G 249
            
Sbjct: 600 A 600

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  148 bits (375), Expect = 3e-39
 Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALLKL    +  D   R +CL     R       C  TGWG  K +  + + L++ ++PL
Sbjct: 482 ALLKLETTVNYTDS-QRPICLPSKGDR-NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPL 539

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C+ +Y    ++    +C G  +G   AC GDSGGPL C   +  W+L GITS+G 
Sbjct: 540 VTNEECQKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGE 597

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+   P VYT +  Y+ WI ++ 
Sbjct: 598 GCAQRERPGVYTNVVEYVDWILEKT 622

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  212 bits (542), Expect = 7e-67
 Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 23/227 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+++  G +PWQV L            +CG  +++  W+VTAAHC+            
Sbjct: 2   VGGEDAKPGQFPWQVVLNGKVD------AFCGGSIVNEKWIVTAAHCVET-------GVK 48

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRA 143
            T V G+ +  E E +E +  V RI  H  F+     Y+HDIALL+L  P       V  
Sbjct: 49  ITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSY-VTP 107

Query: 144 VCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           +C+ D +   +  K      +GWGRV  KG     L+ +RVPL + + C      ++   
Sbjct: 108 ICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTI--T 165

Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
               C G  +G   +C GDSGGP      +G  +L GI S+G   C 
Sbjct: 166 NNMFCAGFHEGGRDSCQGDSGGPHVTE-VEGTSFLTGIISWGEE-CA 210

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  144 bits (365), Expect = 9e-41
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 5/148 (3%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
           ALL+L  P       V  +C+ D +   +  K      +GWGRV  KG     L+ +RVP
Sbjct: 91  ALLELDEPLVLNSY-VTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVP 149

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L + + C      ++       C G  +G   +C GDSGGP      +G  +L GI S+G
Sbjct: 150 LVDRATCLRSTKFTI--TNNMFCAGFHEGGRDSCQGDSGGPHVTE-VEGTSFLTGIISWG 206

Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQINI 431
             CA  G   +YTK+S Y+ WI+++  +
Sbjct: 207 EECAMKGKYGIYTKVSRYVNWIKEKTKL 234

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  212 bits (542), Expect = 8e-67
 Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 17/225 (7%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G ++  GAWPW V L             CGA L+   W+V+AAHC++        P  
Sbjct: 2   VGGSDAKEGAWPWVVGLYYDDR------LLCGASLVSSDWLVSAAHCVYGRNLE---PSK 52

Query: 88  WTAVLGDWDRTE-EEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
           WTA+LG   ++       V   ++ I ++  +      +DIA++ L    +  D  ++ +
Sbjct: 53  WTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDY-IQPI 111

Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L + ++    P + C   GWG V  +G     L++  VPL +   C+ +  +   +   
Sbjct: 112 SLPEENQV-FPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEY-NITEN 169

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            +C G  +G   +C GDSGGPL C  ++ RW+LAG+TSFG   C 
Sbjct: 170 MICAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGYE-CA 212

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  148 bits (377), Expect = 1e-42
 Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           A++ L    +  D  ++ + L + ++    P + C   GWG V  +G     L++  VPL
Sbjct: 94  AMMHLEFKVNYTDY-IQPISLPEENQV-FPPGRNCSIAGWGTVVYQGTTADILQEADVPL 151

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C+ +  +   +    +C G  +G   +C GDSGGPL C  ++ RW+LAG+TSFG 
Sbjct: 152 LSNERCQQQMPEY-NITENMICAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGY 209

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
            CA    P VY ++S +  WI+  ++
Sbjct: 210 ECALPNRPGVYARVSRFTEWIQSFLH 235

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  212 bits (541), Expect = 9e-67
 Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 13/224 (5%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G ++  G +P+Q+S Q          H+CGA + + ++ +TA HC++ D      P  
Sbjct: 2   VGGTDATLGEFPYQLSFQETFIGFSF--HFCGASIYNENYAITAGHCVYGD--DYENPSG 57

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
              V G+ D +  E SE  I V +I +HE F  +   +DI+LLKLS   +  D  V  + 
Sbjct: 58  LQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDN-VAPIA 116

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L +            + TGWG     G+    L+++ VPL +   CR  YG   E+    
Sbjct: 117 LPEQG---HTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGAD-EILDSM 172

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +C G  +G   +C GDSGGPL  S   G  YLAGI S+G G C 
Sbjct: 173 ICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYG-CA 214

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  141 bits (359), Expect = 7e-40
 Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           +LLKLS   +  D  V  + L +            + TGWG     G+    L+++ VPL
Sbjct: 98  SLLKLSGSLTFNDN-VAPIALPEQG---HTATGDVIVTGWGTTSEGGNTPDVLQKVTVPL 153

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   CR  YG   E+    +C G  +G   +C GDSGGPL  S   G  YLAGI S+G 
Sbjct: 154 VSDEDCRADYGAD-EILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGY 211

Query: 405 GCAKSGYPDVYTKLSFYLPWIRK 427
           GCA+ GYP VYT++S+++ WI+ 
Sbjct: 212 GCARPGYPGVYTEVSYHVDWIKA 234

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  213 bits (544), Expect = 1e-66
 Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 29/255 (11%)

Query: 12  RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
            DCG          +++NG +++   +PW   +   +         CG  LI+  ++VTA
Sbjct: 12  NDCGY----QVEADKILNGDDTVPEEFPWTAMIGYKNSS-NFEQFACGGSLINNRYIVTA 66

Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEE-----------KSEVRIPVERIRVHEEF-- 118
           AHC+   +    +  L    LG+W+   +               + + +E    H ++  
Sbjct: 67  AHCVAGRVLR-VVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVD 125

Query: 119 --HNYHHDIALLKLSRPTSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLV 175
              + +HDIAL++L+R     +  +R VCL    ++  V   Q+    GWGR +  G   
Sbjct: 126 GSKDRYHDIALIRLNRQVEFTNY-IRPVCLPQPNEEVQVG--QRLTVVGWGRTE-TGQYS 181

Query: 176 SKLRQIRVPLHNISVCRDKYGD-SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGR 234
           +  +++ VP+ +   C   +G   V +    LC G       +C GDSGGPL     + +
Sbjct: 182 TIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKA-KDSCGGDSGGPLLAERANQQ 240

Query: 235 WYLAGITSFGSGYCG 249
           ++L G+ SFG+  CG
Sbjct: 241 FFLEGLVSFGAT-CG 254

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  143 bits (364), Expect = 4e-40
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 343
           AL++L+R     +  +R VCL    ++  V   Q+    GWGR +  G   +  +++ VP
Sbjct: 135 ALIRLNRQVEFTNY-IRPVCLPQPNEEVQVG--QRLTVVGWGRTE-TGQYSTIKQKLAVP 190

Query: 344 LHNISVCRDKYGD-SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           + +   C   +G   V +    LC G       +C GDSGGPL     + +++L G+ SF
Sbjct: 191 VVHAEQCAKTFGAAGVRVRSSQLCAGGEKA-KDSCGGDSGGPLLAERANQQFFLEGLVSF 249

Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           G+ C   G+P +YTK+  Y  WI   I
Sbjct: 250 GATCGTEGWPGIYTKVGKYRDWIEGNI 276

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  211 bits (540), Expect = 1e-66
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 21/226 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+E   G  PWQ  L            +CG  ++   +++TAAHC++         + 
Sbjct: 2   VGGQECKDGECPWQALLINEENE-----GFCGGTILSEFYILTAAHCLYQ-------AKR 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
           +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   C
Sbjct: 50  FKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN-VAPAC 108

Query: 146 L--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           L   D  +  +  ++  + +G+GR   KG+  ++L+ + VP  + + C+      +    
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFII--TQ 166

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              C G       AC GDSGGP         +++ GI S+G G C 
Sbjct: 167 NMFCAGYDTKQEDACQGDSGGPHVTR-FKDTYFVTGIVSWGEG-CA 210

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  142 bits (360), Expect = 6e-40
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 6/148 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           A+L+L  P + R   V   CL   D  +  +  ++  + +G+GR   KG+  ++L+ + V
Sbjct: 90  AVLRLKTPITFRMN-VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEV 148

Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           P  + + C+      +       C G       AC GDSGGP         +++ GI S+
Sbjct: 149 PYVDRNSCKLSSSFII--TQNMFCAGYDTKQEDACQGDSGGPHVTR-FKDTYFVTGIVSW 205

Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           G GCA+ G   +YTK++ +L WI + + 
Sbjct: 206 GEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  211 bits (539), Expect = 2e-66
 Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 19/227 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+ +   +WPWQ+SLQ          H CG  LI   WV+TAAHC+ +          
Sbjct: 2   VGGRVAQPNSWPWQISLQYKSG--SSYYHTCGGSLIRQGWVMTAAHCVDS-------ART 52

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRA 143
           W  VLG+ +    E  E  + V  + +H  ++       +DIALL+L+   S     V+ 
Sbjct: 53  WRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSA-VQL 111

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
             L  ++ + +     C  TGWG+    G L   L+Q  +P  + + C         +  
Sbjct: 112 AALPPSN-QILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKT 170

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
             +C G   G +  C GDSGGPL C   +G +Y+ G+TSF S   C 
Sbjct: 171 TMVCAG--GGANSGCNGDSGGPLNC-QVNGSYYVHGVTSFVSSSGCN 214

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  135 bits (342), Expect = 2e-37
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L+   S     V+   L  ++ + +     C  TGWG+    G L   L+Q  +P 
Sbjct: 95  ALLRLNTQASLNSA-VQLAALPPSN-QILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPS 152

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF-- 402
            + + C         +    +C G   G +  C GDSGGPL C   +G +Y+ G+TSF  
Sbjct: 153 VDHATCSSSGWWGSTVKTTMVCAG--GGANSGCNGDSGGPLNC-QVNGSYYVHGVTSFVS 209

Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            SGC  S  P V+T++S Y+ W+   +
Sbjct: 210 SSGCNASKKPTVFTRVSAYISWMNGIM 236

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  211 bits (540), Expect = 2e-66
 Identities = 73/229 (31%), Positives = 103/229 (44%), Gaps = 20/229 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + GK   +G  PWQV L V           CG  LI+  WVV+AAHC       +     
Sbjct: 2   VGGKVCPKGECPWQVLLLVNGA------QLCGGTLINTIWVVSAAHCFD----KIKNWRN 51

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
             AVLG+ D +E +  E    V ++ +   +     +HDIALL+L +P    D  V  +C
Sbjct: 52  LIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDH-VVPLC 110

Query: 146 L--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY---GDSVE 200
           L      +R +   +  + +GWG++  +G    +L  + VP      C  +    GDS  
Sbjct: 111 LPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPN 170

Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +     C G  DG   +C GDSGGP       G WYL GI S+G G C 
Sbjct: 171 ITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQG-CA 217

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  142 bits (361), Expect = 5e-40
 Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 7/151 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           ALL+L +P    D  V  +CL      +R +   +  + +GWG++  +G    +L  + V
Sbjct: 92  ALLRLHQPVVLTDH-VVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNV 150

Query: 343 PLHNISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
           P      C  +    GDS  +     C G  DG   +C GDSGGP       G WYL GI
Sbjct: 151 PRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGI 209

Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            S+G GCA  G+  VYT++S Y+ W++K + 
Sbjct: 210 VSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  211 bits (539), Expect = 3e-66
 Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 18/227 (7%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E+ R +WP Q+SLQ          H CG  LI  +WV+TAAHC+            
Sbjct: 2   VGGTEAQRNSWPSQISLQYRSGSSWA--HTCGGTLIRQNWVMTAAHCVDR-------ELT 52

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVRA 143
           +  V+G+ +  +   +E  + V++I VH  ++       +DIALL+L++  +     V+ 
Sbjct: 53  FRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSY-VQL 111

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
             L  A    +     C  TGWG  +  G L   L+Q  +P  + ++C         +  
Sbjct: 112 GVLPRAG-TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKN 170

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
             +C G  DG    C GDSGGPL C L +G++ + G+TSF S   C 
Sbjct: 171 SMVCAG-GDGVRSGCQGDSGGPLHC-LVNGQYAVHGVTSFVSRLGCN 215

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  136 bits (345), Expect = 9e-38
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L++  +     V+   L  A    +     C  TGWG  +  G L   L+Q  +P 
Sbjct: 95  ALLRLAQSVTLNSY-VQLGVLPRAG-TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPT 152

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + ++C         +    +C G  DG    C GDSGGPL C L +G++ + G+TSF S
Sbjct: 153 VDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHC-LVNGQYAVHGVTSFVS 210

Query: 405 --GCAKSGYPDVYTKLSFYLPWIRKQI 429
             GC  +  P V+T++S Y+ WI   I
Sbjct: 211 RLGCNVTRKPTVFTRVSAYISWINNVI 237

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  210 bits (538), Expect = 3e-66
 Identities = 81/222 (36%), Positives = 110/222 (49%), Gaps = 19/222 (8%)

Query: 30  GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT 89
           G E   G WPWQ SLQ          H CGA LI+ +W+V+AAHC          P  WT
Sbjct: 4   GTEVEEGEWPWQASLQWDGS------HRCGATLINATWLVSAAHCFTTY----KNPARWT 53

Query: 90  AVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLT 147
           A  G       + S+++  + RI VHE++   ++ +DI+L +LS P    +  V  VCL 
Sbjct: 54  ASFG----VTIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNA-VHRVCLP 108

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
           DA      P      TG+G +K  G   + LRQ +V L + + C +    +  +    LC
Sbjct: 109 DASYE-FQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLC 167

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            G L+G + AC GDSGGPL  S     WYLAGI S+G   C 
Sbjct: 168 AGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDE-CA 208

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  156 bits (396), Expect = 3e-45
 Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           +L +LS P    +  V  VCL DA      P      TG+G +K  G   + LRQ +V L
Sbjct: 88  SLAELSSPVPYTNA-VHRVCLPDASYE-FQPGDVMFVTGFGALKNDGYSQNHLRQAQVTL 145

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + C +    +  +    LC G L+G + AC GDSGGPL  S     WYLAGI S+G 
Sbjct: 146 IDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGD 205

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQINI 431
            CAK   P VYT+++    WI  +  I
Sbjct: 206 ECAKPNKPGVYTRVTALRDWITSKTGI 232

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  209 bits (534), Expect = 1e-65
 Identities = 65/229 (28%), Positives = 95/229 (41%), Gaps = 21/229 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G  S+ G+ PW  ++ +          +C   L+H  WVV+AAHC  +     P  + 
Sbjct: 2   IGGSSSLPGSHPWLAAIYIGD-------SFCAGSLVHTCWVVSAAHCFSHS----PPRDS 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN---YHHDIALLKLSRPTSAR---DKGV 141
            + VLG               +E+   +  +       HD+ L++L +         + V
Sbjct: 51  VSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFV 110

Query: 142 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVE 200
           + +CL +          +C   GWG +       S  LR+  VPL     C        +
Sbjct: 111 QPICLPEPGSTFP-AGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGAD 169

Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +    LC G  D  S AC GDSGGPL C  K+G  YL GI S+G G CG
Sbjct: 170 ISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDG-CG 216

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  136 bits (344), Expect = 1e-37
 Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 6/150 (4%)

Query: 285 ALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
            L++L +         + V+ +CL +          +C   GWG +       S  LR+ 
Sbjct: 92  VLIRLKKKGDRCATRSQFVQPICLPEPGSTFP-AGHKCQIAGWGHLDENVSGYSSSLREA 150

Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
            VPL     C        ++    LC G  D  S AC GDSGGPL C  K+G  YL GI 
Sbjct: 151 LVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGII 209

Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           S+G GC +   P VYT+++ Y+ WI  +I 
Sbjct: 210 SWGDGCGRLHKPGVYTRVANYVDWINDRIR 239

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  209 bits (535), Expect = 2e-65
 Identities = 74/232 (31%), Positives = 102/232 (43%), Gaps = 24/232 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
             G  ++ G WPWQVS+           H CG  L+   WV++AAHC  ++       E 
Sbjct: 2   TGGSSAVAGQWPWQVSITYEGV------HVCGGSLVSEQWVLSAAHCFPSE----HHKEA 51

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
           +   LG        +      ++ I  H  +       DIALL+LSRP +     +R + 
Sbjct: 52  YEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRY-IRPIS 110

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKYGDSVELHG 203
           L  A          C  TGWG V P   L++   L+Q+ VPL +   C   Y    +   
Sbjct: 111 LPAAQAS-FPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEE 169

Query: 204 GH------LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            H      +C G ++G   AC GDSGGPL C   +G WYL GI S+G   CG
Sbjct: 170 PHFVQEDMVCAGYVEGGKDACQGDSGGPLSCP-VEGLWYLTGIVSWGDA-CG 219

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  142 bits (360), Expect = 9e-40
 Identities = 56/154 (36%), Positives = 74/154 (48%), Gaps = 11/154 (7%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRV 342
           ALL+LSRP +     +R + L  A          C  TGWG V P   L++   L+Q+ V
Sbjct: 92  ALLQLSRPITFSRY-IRPISLPAAQAS-FPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEV 149

Query: 343 PLHNISVCRDKYGDSVELHGGH------LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           PL +   C   Y    +    H      +C G ++G   AC GDSGGPL C   +G WYL
Sbjct: 150 PLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCP-VEGLWYL 208

Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            GI S+G  C     P VYT  S Y  WI+ ++ 
Sbjct: 209 TGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  209 bits (534), Expect = 2e-65
 Identities = 76/232 (32%), Positives = 111/232 (47%), Gaps = 27/232 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I+GK + RG  PWQV L     +       CGAVLIHPSWV+TAAHC+          + 
Sbjct: 2   IDGKMTRRGDSPWQVVLLDSKKK-----LACGAVLIHPSWVLTAAHCMDE-------SKK 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
               LG++D    EK E+ + ++ + VH  +      +DIALL L++P +     +  +C
Sbjct: 50  LLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQT-IVPIC 108

Query: 146 LTDADKRPVN---PKQQCVATGWGRVKPKGDLVSK-----LRQIRVPLHNISVCRDKYGD 197
           L D+           Q+ + TGWG    +     +     L  I++P+   + C +   +
Sbjct: 109 LPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN 168

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            V      LC G L     AC GDSGGP+  S   G W+L G+ S+G G CG
Sbjct: 169 MV--SENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFLVGLVSWGEG-CG 216

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  138 bits (349), Expect = 2e-38
 Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 12/154 (7%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVN---PKQQCVATGWGRVKPKGDLVSK----- 336
           ALL L++P +     +  +CL D+           Q+ + TGWG    +     +     
Sbjct: 90  ALLHLAQPATLSQT-IVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFV 148

Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           L  I++P+   + C +   + V      LC G L     AC GDSGGP+  S   G W+L
Sbjct: 149 LNFIKIPVVPHNECSEVMSNMV--SENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFL 205

Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            G+ S+G GC       VYTK+S YL WI   I 
Sbjct: 206 VGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  208 bits (532), Expect = 1e-64
 Identities = 74/263 (28%), Positives = 107/263 (40%), Gaps = 25/263 (9%)

Query: 4   LCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLI 63
           L +  +        +  S+   R++ G ++  G  PWQV L     R       CGA LI
Sbjct: 8   LFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF----RKSPQELLCGASLI 63

Query: 64  HPSWVVTAAHCIHNDIFSLPI-PELWTAVLGDWDRTE-EEKSEVRIPVERIRVHEEFH-- 119
              WV+TAAHC+    +            +G   RT  E   E    +E+I +H  ++  
Sbjct: 64  SDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR 123

Query: 120 -NYHHDIALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPK----- 171
            N   DIAL+KL +P +  D  +  VCL   +     +    +   TGWG +K       
Sbjct: 124 ENLDRDIALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANV 182

Query: 172 -GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQ 227
                S L+ + +P+    VC+D     +       C G          AC GDSGGP  
Sbjct: 183 GKGQPSVLQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFV 240

Query: 228 C-SLKDGRWYLAGITSFGSGYCG 249
             S  + RWY  GI S+G G C 
Sbjct: 241 MKSPFNNRWYQMGIVSWGEG-CD 262

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  134 bits (339), Expect = 2e-36
 Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 15/158 (9%)

Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPK------GDLVSK 336
           AL+KL +P +  D  +  VCL   +     +    +   TGWG +K            S 
Sbjct: 131 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 189

Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQC-SLKDG 392
           L+ + +P+    VC+D     +       C G          AC GDSGGP    S  + 
Sbjct: 190 LQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 247

Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 248 RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  206 bits (527), Expect = 1e-64
 Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 20/230 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G  +  G +PWQ+S Q    + G   H CGA L+  +  ++A+HC+        +P  
Sbjct: 2   IGGTNASPGEFPWQLSQQR---QSGSWSHSCGASLLSSTSALSASHCVDGV-----LPNN 53

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVRA 143
              + G W +++   ++    V+   +HE +     +Y +DIA+L L+   S     ++A
Sbjct: 54  IRVIAGLWQQSDTSGTQTA-NVDSYTMHENYGAGTASYSNDIAILHLATSISLGGN-IQA 111

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD--SVEL 201
             L   +         CV +GWGR     +L   L++  +P+   + C           +
Sbjct: 112 AVLPANNNND-YAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANI 170

Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
              H+C     G +GAC GDSGGPL C   DG   + G+TS+     G+G
Sbjct: 171 WDNHICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVGVTSWVVS-SGLG 217

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  138 bits (351), Expect = 9e-39
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           A+L L+   S     ++A  L   +         CV +GWGR     +L   L++  +P+
Sbjct: 95  AILHLATSISLGGN-IQAAVLPANNNND-YAGTTCVISGWGRTDGTNNLPDILQKSSIPV 152

Query: 345 HNISVCRDKYGD--SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
              + C           +   H+C     G +GAC GDSGGPL C   DG   + G+TS+
Sbjct: 153 ITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVGVTSW 210

Query: 403 ----GSGCAKSGYPDVYTKLSFYLPWIRKQ 428
               G G     YP VYT++S YL WI   
Sbjct: 211 VVSSGLGACLPDYPSVYTRVSAYLGWIGDN 240

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  208 bits (532), Expect = 3e-64
 Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 23/246 (9%)

Query: 13  DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
            CG  +    ++ R+I G+++  G +PWQV   +            G  L+   W++TAA
Sbjct: 76  VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAA 127

Query: 73  HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-----HNYHHDIAL 127
           H ++               LG  +  E  K     P+ R+ VH ++     +N+  DIAL
Sbjct: 128 HTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNH-PIRRVSVHPDYRQDESYNFEGDIAL 186

Query: 128 LKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN 187
           L+L    +     +  +CL D D    +       +G+G +  +  +   LR +R+P+ N
Sbjct: 187 LELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVAN 242

Query: 188 ISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSF 243
              C +                C G       AC GDSGG       +  RW   GI S+
Sbjct: 243 PQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSW 302

Query: 244 GSGYCG 249
           G G C 
Sbjct: 303 GIG-CS 307

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  126 bits (319), Expect = 3e-33
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L    +     +  +CL D D    +       +G+G ++    +   LR +R+P+
Sbjct: 185 ALLELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVME--EKIAHDLRFVRLPV 240

Query: 345 HNISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGIT 400
            N   C +                C G       AC GDSGG       +  RW   GI 
Sbjct: 241 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIV 300

Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           S+G GC++      YTK+  Y+ WI+K++
Sbjct: 301 SWGIGCSRG--YGFYTKVLNYVDWIKKEM 327

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  205 bits (525), Expect = 3e-64
 Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 24/235 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHND--------- 78
            NG+ + +G  PW   L  L+ +      +CG  L+  SW+VTAAHC+H           
Sbjct: 2   FNGRPAQKGTTPWIAMLSHLNGQ-----PFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLR 56

Query: 79  IFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSA 136
              L  P  +  +LG   R   +++E  + V+   +H ++    + +D+AL++L      
Sbjct: 57  DSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVL 116

Query: 137 RDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYG 196
               V  +CL +            + +GWG+          L +I +P+ + S C+  Y 
Sbjct: 117 NAF-VMPICLPEGP---QQEGAMVIVSGWGKQFL-QRFPETLMEIEIPIVDHSTCQKAYA 171

Query: 197 DSV-ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGYCG 249
               ++    +C G+ +G   AC GDSGGP+    +  G+WYL G  S+G   CG
Sbjct: 172 PLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDD-CG 225

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  137 bits (347), Expect = 6e-38
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL++L          V  +CL +            + +GWG+          L +I +P+
Sbjct: 106 ALVELLESPVLNAF-VMPICLPEGP---QQEGAMVIVSGWGKQFL-QRFPETLMEIEIPI 160

Query: 345 HNISVCRDKYGDSV-ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSF 402
            + S C+  Y     ++    +C G+ +G   AC GDSGGP+    +  G+WYL G  S+
Sbjct: 161 VDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSW 220

Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQINI 431
           G  C K     VY+ +     WI++   +
Sbjct: 221 GDDCGKKDRYGVYSYIHHNKDWIQRVTGV 249

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  205 bits (525), Expect = 3e-64
 Identities = 78/241 (32%), Positives = 117/241 (48%), Gaps = 26/241 (10%)

Query: 14  CGVGIRYSHRQP--RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           CGV           R++NG+E++ G+WPWQVSLQ          H+CG  LI+ +WVVTA
Sbjct: 1   CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGF-----HFCGGSLINENWVVTA 55

Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLK 129
           AHC                V G++D+    +   ++ + ++  + +++    ++DI LLK
Sbjct: 56  AHCGVTTS--------DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLK 107

Query: 130 LSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVPLHNI 188
           LS   S     V AVCL  A          CV TGWG  +    +   +L+Q  +PL + 
Sbjct: 108 LSTAASFSQT-VSAVCLPSASDDF-AAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSN 165

Query: 189 SVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
           + C+  +G  +      +C G       +C+GDSGGPL C  K+G W L GI S+GS   
Sbjct: 166 TNCKKYWGTKI--KDAMICAGA--SGVSSCMGDSGGPLVCK-KNGAWTLVGIVSWGSS-T 219

Query: 249 G 249
            
Sbjct: 220 C 220

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  139 bits (352), Expect = 9e-39
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 8/146 (5%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVP 343
            LLKLS   S     V AVCL  A          CV TGWG  +    +   +L+Q  +P
Sbjct: 104 TLLKLSTAASFSQT-VSAVCLPSASDDF-AAGTTCVTTGWGLTRYTNANTPDRLQQASLP 161

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L + + C+  +G  +      +C G       +C+GDSGGPL C  K+G W L GI S+G
Sbjct: 162 LLSNTNCKKYWGTKI--KDAMICAGA--SGVSSCMGDSGGPLVCK-KNGAWTLVGIVSWG 216

Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQI 429
           S    +  P VY +++  + W+++ +
Sbjct: 217 SSTCSTSTPGVYARVTALVNWVQQTL 242

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  209 bits (535), Expect = 4e-64
 Identities = 72/255 (28%), Positives = 108/255 (42%), Gaps = 28/255 (10%)

Query: 6   DTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHP 65
                 +DCG          R++ G+++  G WPWQVSL+          H CG  L+  
Sbjct: 100 FLAAICQDCGRR---KLPVDRIVGGRDTSLGRWPWQVSLRYDGA------HLCGGSLLSG 150

Query: 66  SWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF------- 118
            WV+TAAHC         +   W    G   +       +++ V+ +  H  +       
Sbjct: 151 DWVLTAAHCFPE---RNRVLSRWRVFAGAVAQASPH--GLQLGVQAVVYHGGYLPFRDPN 205

Query: 119 -HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 177
                +DIAL+ LS P    +  ++ VCL  A +  +   + C  TGWG  +  G     
Sbjct: 206 SEENSNDIALVHLSSPLPLTEY-IQPVCLPAAGQ-ALVDGKICTVTGWGNTQYYGQQAGV 263

Query: 178 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC---SLKDGR 234
           L++ RVP+ +  VC        ++     C G  +G   AC GDSGGP  C     +  R
Sbjct: 264 LQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPR 323

Query: 235 WYLAGITSFGSGYCG 249
           W L GI S+G+G C 
Sbjct: 324 WRLCGIVSWGTG-CA 337

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  145 bits (367), Expect = 1e-39
 Identities = 52/148 (35%), Positives = 74/148 (50%), Gaps = 5/148 (3%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+ LS P    +  ++ VCL  A +  +   + C  TGWG  +  G     L++ RVP+
Sbjct: 214 ALVHLSSPLPLTEY-IQPVCLPAAGQ-ALVDGKICTVTGWGNTQYYGQQAGVLQEARVPI 271

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC---SLKDGRWYLAGITS 401
            +  VC        ++     C G  +G   AC GDSGGP  C     +  RW L GI S
Sbjct: 272 ISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVS 331

Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G+GCA +  P VYTK+S +  WI + I
Sbjct: 332 WGTGCALAQKPGVYTKVSDFREWIFQAI 359

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  204 bits (522), Expect = 8e-64
 Identities = 80/233 (34%), Positives = 106/233 (45%), Gaps = 26/233 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+E+ R  WPWQVSL+V   R     H+CG  LIHP WV+TAAHC+      +     
Sbjct: 2   VGGQEAPRSKWPWQVSLRV---RDRYWMHFCGGSLIHPQWVLTAAHCVGP---DVKDLAT 55

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
               L +         +  +PV RI VH +F       DIALL+L  P +   + V  V 
Sbjct: 56  LRVQLREQHLYY---QDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSR-VHTVM 111

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKYGDSVELHG 203
           L  A +    P   C  TGWG V     L     L+Q++VP+    +C  KY        
Sbjct: 112 LPPASET-FPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGD 170

Query: 204 GH-------LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
                    LC G  +    +C GDSGGPL C   +G W  AG+ S+G G C 
Sbjct: 171 DVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCK-VNGTWLQAGVVSWGEG-CA 219

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  140 bits (354), Expect = 5e-39
 Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRV 342
           ALL+L  P +   + V  V L  A +    P   C  TGWG V     L     L+Q++V
Sbjct: 93  ALLELEEPVNISSR-VHTVMLPPASET-FPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKV 150

Query: 343 PLHNISVCRDKYGDSVELHGGH-------LCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 395
           P+    +C  KY                 LC G  +    +C GDSGGPL C   +G W 
Sbjct: 151 PIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCK-VNGTWL 207

Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            AG+ S+G GCA+   P +YT++++YL WI   + 
Sbjct: 208 QAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVP 242

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  203 bits (519), Expect = 2e-63
 Identities = 61/225 (27%), Positives = 89/225 (39%), Gaps = 23/225 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G+E I  + P+  SLQ          H CG VL+HP WV+TAAHC+            
Sbjct: 2   IGGREVIPHSRPYMASLQRNGS------HLCGGVLVHPKWVLTAAHCLAQR------MAQ 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRAV 144
              VLG       +   +   ++    H  +       +D+ALL+L          +R +
Sbjct: 50  LRLVLGLHTL---DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRT-IRPL 105

Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L     + V    +C   GWG     G L   LR++ + + +  +C +    +  L   
Sbjct: 106 ALPSKR-QVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPS 164

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            +C          C GDSGGPL C        LAG+ SF S  C 
Sbjct: 165 MVCLAADSKDQAPCKGDSGGPLVC---GKGRVLAGVLSFSSRVCT 206

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  138 bits (350), Expect = 2e-38
 Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L          +R + L     + V    +C   GWG     G L   LR++ + +
Sbjct: 88  ALLQLDGKVKPSRT-IRPLALPSKR-QVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQV 145

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +  +C +    +  L    +C          C GDSGGPL C        LAG+ SF S
Sbjct: 146 LDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPLVC---GKGRVLAGVLSFSS 202

Query: 405 G-CAKSGYPDVYTKLSFYLPWIRKQI 429
             C     P V T ++ Y+ WIRK  
Sbjct: 203 RVCTDIFKPPVATAVAPYVSWIRKVT 228

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  204 bits (520), Expect = 3e-63
 Identities = 71/239 (29%), Positives = 99/239 (41%), Gaps = 25/239 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPI-PE 86
           + G ++  G  PWQV L     R       CGA LI   WV+TAAHC+    +       
Sbjct: 2   VEGSDAEIGMSPWQVMLF----RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57

Query: 87  LWTAVLGDWDRTE-EEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVR 142
                +G   RT  E   E    +E+I +H  ++   N   DIAL+KL +P +  D  + 
Sbjct: 58  DLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-IH 116

Query: 143 AVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLV------SKLRQIRVPLHNISVCRDK 194
            VCL   +     +    +   TGWG +K            S L+ + +P+    VC+D 
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176

Query: 195 YGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQC-SLKDGRWYLAGITSFGSGYCG 249
               +       C G          AC GDSGGP    S  + RWY  GI S+G G C 
Sbjct: 177 TRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG-CD 232

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  136 bits (344), Expect = 2e-37
 Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 15/158 (9%)

Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLV------SK 336
           AL+KL +P +  D  +  VCL   +     +    +   TGWG +K            S 
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159

Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQC-SLKDG 392
           L+ + +P+    VC+D     +       C G          AC GDSGGP    S  + 
Sbjct: 160 LQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 217

Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 218 RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  202 bits (516), Expect = 3e-63
 Identities = 53/222 (23%), Positives = 77/222 (34%), Gaps = 28/222 (12%)

Query: 30  GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT 89
           G  + +G +P+ V L             CG  L     V+TAAHC+             T
Sbjct: 4   GTRAAQGEFPFMVRLS----------MGCGGALYAQDIVLTAAHCVSGS----GNNTSIT 49

Query: 90  AVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLT 147
           A  G  D      S V++   ++     F    Y  D AL+KL++P +      +     
Sbjct: 50  ATGGVVDLQSS--SAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN------QPTLKI 101

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
                    +      GWG  +  G     L +  VP  + + CR        +    +C
Sbjct: 102 ATTTAY--NQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFI-LVANEMIC 158

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            G        C GDSGGP+        W   GI S+G G C 
Sbjct: 159 AGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEG-CA 199

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  142 bits (361), Expect = 3e-40
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 9/146 (6%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+KL++P +      +              +      GWG  +  G     L +  VP 
Sbjct: 86  ALIKLAQPIN------QPTLKIATTTAY--NQGTFTVAGWGANREGGSQQRYLLKANVPF 137

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + CR        +    +C G        C GDSGGP+        W   GI S+G 
Sbjct: 138 VSDAACRSSSSFI-LVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGE 196

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           GCA+ G   VYT++S +   I     
Sbjct: 197 GCARKGKYGVYTEVSTFASAIASAAR 222

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  202 bits (516), Expect = 4e-63
 Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 21/223 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E    + P+    + L         +CG  L+   +V+TAAHC             
Sbjct: 2   IGGNEISPHSRPYMAYYEFLKVGGK--KMFCGGFLVRDKFVLTAAHC---------KGRS 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
            T  LG  +   +E+++  IPV +   H ++   +  +DI LLKL R    R + VR + 
Sbjct: 51  MTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAK-RTRAVRPLN 109

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L   +   V P  +C   GWG+V P G+    L ++++ +    VC  ++  S       
Sbjct: 110 LPRRNA-HVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSY-NRANE 167

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
           +C G       +   DSGGPL C     +   AGI S+G    
Sbjct: 168 ICVGDSKIKGASFEEDSGGPLVC-----KRAAAGIVSYGQTDG 205

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  133 bits (338), Expect = 7e-37
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LLKL R    R + VR + L   +   V P  +C   GWG+V P G+    L ++++ +
Sbjct: 91  MLLKLVRNAK-RTRAVRPLNLPRRNA-HVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTV 148

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
               VC  ++  S       +C G       +   DSGGPL C     +   AGI S+G 
Sbjct: 149 QKDQVCESQFQSSY-NRANEICVGDSKIKGASFEEDSGGPLVC-----KRAAAGIVSYGQ 202

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
                  P V+T++  ++ WI+K + 
Sbjct: 203 TDGS--APQVFTRVLSFVSWIKKTMK 226

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  207 bits (529), Expect = 9e-63
 Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 25/263 (9%)

Query: 4   LCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLI 63
           L +  +        +  S+   R++ G ++  G  PWQV L     R       CGA LI
Sbjct: 143 LFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF----RKSPQELLCGASLI 198

Query: 64  HPSWVVTAAHCIHNDIFSLPI-PELWTAVLGDWDRTEEEKS-EVRIPVERIRVHEEFH-- 119
              WV+TAAHC+    +            +G   RT  E++ E    +E+I +H  ++  
Sbjct: 199 SDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR 258

Query: 120 -NYHHDIALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLV- 175
            N   DIAL+KL +P +  D  +  VCL   +     +    +   TGWG +K       
Sbjct: 259 ENLDRDIALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANV 317

Query: 176 -----SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQ 227
                S L+ + +P+    VC+D     +       C G          AC GDSGGP  
Sbjct: 318 GKGQPSVLQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFV 375

Query: 228 C-SLKDGRWYLAGITSFGSGYCG 249
             S  + RWY  GI S+G G C 
Sbjct: 376 MKSPFNNRWYQMGIVSWGEG-CD 397

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  132 bits (333), Expect = 2e-34
 Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 15/158 (9%)

Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLV------SK 336
           AL+KL +P +  D  +  VCL   +     +    +   TGWG +K            S 
Sbjct: 266 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 324

Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQC-SLKDG 392
           L+ + +P+    VC+D     +       C G          AC GDSGGP    S  + 
Sbjct: 325 LQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 382

Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           RWY  GI S+G GC + G    YT +     WI+K I+
Sbjct: 383 RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 420

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  206 bits (527), Expect = 9e-63
 Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 23/246 (9%)

Query: 13  DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
            CG  +    ++ ++I G+++  G +PWQV   +            G  L+   W++TAA
Sbjct: 144 VCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAA 195

Query: 73  HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-----HNYHHDIAL 127
           H ++               LG  +  E  K     P+ R+ VH ++     +N+  DIAL
Sbjct: 196 HTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNH-PIRRVSVHPDYRQDESYNFEGDIAL 254

Query: 128 LKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN 187
           L+L    +     +  +CL D D    +       +G+G +  +  +   LR +R+P+ N
Sbjct: 255 LELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVAN 310

Query: 188 ISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSF 243
              C +                C G       AC GDSGG       +  RW   GI S+
Sbjct: 311 PQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSW 370

Query: 244 GSGYCG 249
           G G C 
Sbjct: 371 GIG-CS 375

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  126 bits (318), Expect = 1e-32
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L    +     +  +CL D D    +       +G+G ++    +   LR +R+P+
Sbjct: 253 ALLELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVME--EKIAHDLRFVRLPV 308

Query: 345 HNISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGIT 400
            N   C +                C G       AC GDSGG       +  RW   GI 
Sbjct: 309 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIV 368

Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           S+G GC++      YTK+  Y+ WI+K++ 
Sbjct: 369 SWGIGCSRG--YGFYTKVLNYVDWIKKEME 396

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  200 bits (510), Expect = 3e-62
 Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 23/223 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G ESI  + P+   L ++  +       CG  LI   +V+TAAHC   +         
Sbjct: 2   IGGVESIPHSRPYMAHLDIVTEKGLR--VICGGFLISRQFVLTAAHCKGRE--------- 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
            T +LG  D  + E ++ +I VE+  +HE +      HDI LLKL +        V  V 
Sbjct: 51  ITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVE-LTPAVNVVP 109

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L       ++P   C A GWG+   +      LR++ + + +   C D        +   
Sbjct: 110 LPSPSD-FIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRY---YEYKFQ 165

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
           +C G       A +GDSGGPL C          GI S+G    
Sbjct: 166 VCVGSPTTLRAAFMGDSGGPLLC-----AGVAHGIVSYGHPDA 203

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  134 bits (341), Expect = 2e-37
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 12/146 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LLKL +        V  V L       ++P   C A GWG+   +      LR++ + +
Sbjct: 91  MLLKLEKKVE-LTPAVNVVPLPSPSD-FIHPGAMCWAAGWGKTGVRDPTSYTLREVELRI 148

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C D        +   +C G       A +GDSGGPL C          GI S+G 
Sbjct: 149 MDEKACVDYRY---YEYKFQVCVGSPTTLRAAFMGDSGGPLLC-----AGVAHGIVSYGH 200

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
             AK   P ++T++S Y+PWI   IN
Sbjct: 201 PDAK--PPAIFTRVSTYVPWINAVIN 224

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  200 bits (510), Expect = 3e-62
 Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 22/223 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E+   + P+   L +   +       CG  LI   +V+TAAHC  +          
Sbjct: 2   IGGHEAKPHSRPYMAYLMIWDQK---SLKRCGGFLIRDDFVLTAAHCWGSS--------- 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
               LG  +  E+E ++  IPV+R   H  +   N+ +DI LL+L R    R + V+ + 
Sbjct: 50  INVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAK-RTRAVQPLR 108

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L       V P Q C   GWG+  P G     L+++++ +     C              
Sbjct: 109 LPSNK-AQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYY-DSTIE 166

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
           LC G  +    +  GDSGGPL C          GI S+G    
Sbjct: 167 LCVGDPEIKKTSFKGDSGGPLVC-----NKVAQGIVSYGRNNG 204

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  133 bits (338), Expect = 6e-37
 Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LL+L R    R + V+ + L       V P Q C   GWG+  P G     L+++++ +
Sbjct: 90  MLLQLERKAK-RTRAVQPLRLPSNK-AQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTV 147

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C              LC G  +    +  GDSGGPL C          GI S+G 
Sbjct: 148 QEDRKCESDLRHYY-DSTIELCVGDPEIKKTSFKGDSGGPLVC-----NKVAQGIVSYGR 201

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
                  P   TK+S ++ WI+K +
Sbjct: 202 NNGM--PPRACTKVSSFVHWIKKTM 224

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  200 bits (510), Expect = 3e-62
 Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 23/223 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E+   + P+   L           H CG  L+   +V+TAAHC+ +          
Sbjct: 2   IGGHEAKPHSRPYMAFLLFKTSG---KSHICGGFLVREDFVLTAAHCLGSS--------- 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
               LG  +  E E+++  IPV R   H ++      +DI LLKL+R        V  + 
Sbjct: 50  INVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKAD-ITDKVSPIN 108

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L  +    V P   C   GWGR+        KL+++ + + +   C  ++ + +      
Sbjct: 109 LPRSLA-EVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYI--PFTQ 165

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
           +C G       +  GDSGGPL C          GI S+G    
Sbjct: 166 ICAGDPSKRKNSFSGDSGGPLVC-----NGVAQGIVSYGRNDG 203

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  134 bits (340), Expect = 4e-37
 Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LLKL+R        V  + L  +    V P   C   GWGR+        KL+++ + +
Sbjct: 90  MLLKLTRKAD-ITDKVSPINLPRSLA-EVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEV 147

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C  ++ + +      +C G       +  GDSGGPL C          GI S+G 
Sbjct: 148 QSEEKCIARFKNYI--PFTQICAGDPSKRKNSFSGDSGGPLVC-----NGVAQGIVSYGR 200

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
                  PDVYT++S +L WI   + 
Sbjct: 201 NDGT--TPDVYTRISSFLSWIHSTMR 224

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  200 bits (510), Expect = 4e-62
 Identities = 58/231 (25%), Positives = 91/231 (39%), Gaps = 23/231 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G+++  G +PWQV   +            G  L+   W++TAAH ++           
Sbjct: 2   IGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNAS 53

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-----HNYHHDIALLKLSRPTSARDKGVR 142
               LG  +  E  K     P+ R+ VH ++     +N+  DIALL+L    +     + 
Sbjct: 54  LDVFLGHTNVEELMKLGNH-PIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN-LL 111

Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY---GDSV 199
            +CL D D    +       +G+G +  +  +   LR +R+P+ N   C +         
Sbjct: 112 PICLPDNDTF-YDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVANPQACENWLRGKNRMD 168

Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSFGSGYCG 249
                  C G       AC GDSGG       +  RW   GI S+G G C 
Sbjct: 169 VFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CS 218

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  128 bits (324), Expect = 8e-35
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALL+L    +     +  +CL D D    +       +G+G ++    +   LR +R+P+
Sbjct: 96  ALLELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVME--EKIAHDLRFVRLPV 151

Query: 345 HNISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGIT 400
            N   C +                C G       AC GDSGG       +  RW   GI 
Sbjct: 152 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIV 211

Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           S+G GC++      YTK+  Y+ WI+K++ 
Sbjct: 212 SWGIGCSRG--YGFYTKVLNYVDWIKKEME 239

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  199 bits (509), Expect = 6e-62
 Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 30/232 (12%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
            +I GKE    + P+  S+Q          H CG VLI P WV+TAAHC +         
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGH------HVCGGVLIDPQWVLTAAHCQYRF----TKG 51

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRP---TSARDKG 140
           +  T VLG    ++ E S+  + +++             +DI L+KL             
Sbjct: 52  QSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKH---- 107

Query: 141 VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVC--RDKYGD 197
           V+ + +    K  +    +C  TGWG   P     S  LR++ V + +  +C  +  Y  
Sbjct: 108 VKMLHI--RSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNG 165

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              +    +C G   G   +C GD+GGPL C     +     I S G   CG
Sbjct: 166 DPFITKDMVCAGDAKGQKDSCKGDAGGPLIC-----KGVFHAIVSGGHE-CG 211

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  131 bits (332), Expect = 7e-36
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 18/152 (11%)

Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
            L+KL             V+ + +    K  +    +C  TGWG   P     S  LR++
Sbjct: 94  MLVKLQTAAKLNKH----VKMLHI--RSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREV 147

Query: 341 RVPLHNISVC--RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAG 398
            V + +  +C  +  Y     +    +C G   G   +C GD+GGPL C     +     
Sbjct: 148 TVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLIC-----KGVFHA 202

Query: 399 ITSFGSGCAKSGYPDVYTKLSF-YLPWIRKQI 429
           I S G  C  +  P +YT L+  Y  WI+  +
Sbjct: 203 IVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  199 bits (507), Expect = 1e-61
 Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 24/231 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
             G+++  G +PWQV +                 L++ +WV+TAAH ++           
Sbjct: 2   YGGQKAKPGDFPWQVLIL--------GGTTAAGALLYDNWVLTAAHAVYEQKHD---ASA 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRAV 144
               +G   R        +   E + +HE +     + +DIAL+KL+         +  +
Sbjct: 51  LDIRMGTLKRLSPH--YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSN-ITPI 107

Query: 145 CL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           CL     +  +       A+GWG  + +G L   L  + +P+ +   C   Y       G
Sbjct: 108 CLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRG 166

Query: 204 ----GHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGYCG 249
                 LC G   G   +C GDSGG L        RW++ GI S+GS  CG
Sbjct: 167 SVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCG 217

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  133 bits (338), Expect = 7e-37
 Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 285 ALLKLSRPTSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 343
           AL+KL+         +  +CL     +  +       A+GWG  + +G L   L  + +P
Sbjct: 90  ALIKLNNKVVINSN-ITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIP 147

Query: 344 LHNISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAG 398
           + +   C   Y       G      LC G   G   +C GDSGG L        RW++ G
Sbjct: 148 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 207

Query: 399 ITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+GS  C ++G   VYTK+  Y+PWI   I+
Sbjct: 208 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  198 bits (505), Expect = 1e-61
 Identities = 58/224 (25%), Positives = 87/224 (38%), Gaps = 30/224 (13%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+++    +P+  S+Q      G   H+CG  LIH  +V+TAA C  +       P +
Sbjct: 2   VGGRKARPRQFPFLASIQ----NQGR--HFCGGALIHARFVMTAASCFQSQ-----NPGV 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
            T VLG +D    E+   +           +      +D+ LL+L R  +     V  + 
Sbjct: 51  STVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREAN-LTSSVTILP 109

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L   +   V    +C   GWG  +  G L    R + V +     CR            +
Sbjct: 110 LPLQN-ATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NN 158

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +C G L    G C GD G PL C          G+ SF  G CG
Sbjct: 159 VCTGVLTRRGGICNGDGGTPLVC-----EGLAHGVASFSLGPCG 197

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  130 bits (330), Expect = 9e-36
 Identities = 38/146 (26%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LL+L R  +     V  + L   +   V    +C   GWG  +  G L    R + V +
Sbjct: 91  MLLQLDREAN-LTSSVTILPLPLQN-ATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTV 148

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                CR            ++C G L    G C GD G PL C          G+ SF  
Sbjct: 149 TPEDQCRP----------NNVCTGVLTRRGGICNGDGGTPLVC-----EGLAHGVASFSL 193

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           G      PD +T+++ +  WI   +N
Sbjct: 194 GPCGR-GPDFFTRVALFRDWIDGVLN 218

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  198 bits (505), Expect = 2e-61
 Identities = 60/224 (26%), Positives = 91/224 (40%), Gaps = 22/224 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+E+   A P+  S+Q+         H CG VL+   WV++AAHC             
Sbjct: 2   LGGREAEAHARPYMASVQLNGA------HLCGGVLVAEQWVLSAAHC-----LEDAADGK 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
              +LG    ++ E S+    V R   H +       HD+ LL+LS   +     VR + 
Sbjct: 51  VQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKAT-LGPAVRPLP 109

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
               D R V P   C   GWG V   G     L+ + +P+ + + C  +      +    
Sbjct: 110 WQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERL 168

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +C         +C GD+GGPL C        L G+ + GS  CG
Sbjct: 169 MCAES--NRRDSCKGDAGGPLVC-----GGVLEGVVTSGSRVCG 205

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  129 bits (327), Expect = 2e-35
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LL+LS   +     VR +     D R V P   C   GWG V   G     L+ + +P+
Sbjct: 91  LLLQLSEKAT-LGPAVRPLPWQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPV 148

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + + C  +      +    +C         +C GD+GGPL C        L G+ + GS
Sbjct: 149 LDRATCNRRTHHDGAITERLMCAES--NRRDSCKGDAGGPLVC-----GGVLEGVVTSGS 201

Query: 405 G-CAKSGYPDVYTKLSFYLPWIRKQI 429
             C     P +YT+++ Y  WI   +
Sbjct: 202 RVCGNRKKPGIYTRVASYAAWIDSVL 227

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  203 bits (519), Expect = 2e-61
 Identities = 75/260 (28%), Positives = 105/260 (40%), Gaps = 38/260 (14%)

Query: 11  ARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVT 70
             DCG  +       R+ NG E    + PW   L+            CG  +I   +++T
Sbjct: 108 NFDCGNFL-----SQRVSNGYEVKLSSRPWMALLRYQQFGES--RFLCGGAMISERYILT 160

Query: 71  AAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSE------------VRIPVERIRVHEEF 118
           AAHC+H         +L+   LG+   + EE               V + +E+  +HE++
Sbjct: 161 AAHCVHG-----LQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKY 215

Query: 119 H--NYHHDIALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDL 174
              +  HDIALLKL+R    +   ++ +CL  TD  K           TGWG  +  G  
Sbjct: 216 DARHIMHDIALLKLNRSVPFQKH-IKPICLPITDELKEKAEQISTYFVTGWGTTE-NGSS 273

Query: 175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK--- 231
              L Q  VPL   S C   Y  +V      LC G  D    +C GDSGGPLQ   +   
Sbjct: 274 SDVLLQANVPLQPRSACSQAYRRAV--PLSQLCVGGGDL-QDSCKGDSGGPLQAPAQYLG 330

Query: 232 --DGRWYLAGITSFGSGYCG 249
               +    GI S G   CG
Sbjct: 331 EYAPKMVEFGIVSQGVVTCG 350

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  133 bits (335), Expect = 6e-35
 Identities = 49/154 (31%), Positives = 64/154 (41%), Gaps = 13/154 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           ALLKL+R    +   ++ +CL  TD  K           TGWG  +  G     L Q  V
Sbjct: 225 ALLKLNRSVPFQKH-IKPICLPITDELKEKAEQISTYFVTGWGTTE-NGSSSDVLLQANV 282

Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-----DGRWYLA 397
           PL   S C   Y  +V      LC G  D    +C GDSGGPLQ   +       +    
Sbjct: 283 PLQPRSACSQAYRRAV--PLSQLCVGGGDL-QDSCKGDSGGPLQAPAQYLGEYAPKMVEF 339

Query: 398 GITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           GI S G   C +   P +YT +  Y+ WI   + 
Sbjct: 340 GIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMA 373

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  203 bits (517), Expect = 3e-61
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 25/254 (9%)

Query: 12  RDCGVGIRYSHRQPRLINGK-ESIRGAWPWQVSLQV--LHPRLGLMPHWCGAVLIHPSWV 68
             CG+         ++     E+  G +PW V++    + P  G     CG  LI PS V
Sbjct: 116 SFCGI-RNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVV 174

Query: 69  VTAAHCIHNDIFSLPIPELWTAVLGDWD--RTEEEKSEVRIPVERIRVHEEFH--NYHHD 124
           +T AHC+++        +      G+WD    +E        + ++ +H  F+     +D
Sbjct: 175 LTGAHCVNS---YQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVND 231

Query: 125 IALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV--SKLRQIR 182
           +ALL L RP    D  +  +CL    +   +   +C A+GWG+ +        + L++I+
Sbjct: 232 VALLLLDRPLVQADN-IGTICLPQQSQIFDS--TECFASGWGKKEFGSRHRYSNILKKIQ 288

Query: 183 VPLHNISVCRDKY-----GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL--KDGRW 235
           +P  +   C+        G    L    +C G   G    C GD G PL C       R+
Sbjct: 289 LPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRY 347

Query: 236 YLAGITSFGSGYCG 249
              GI ++G G CG
Sbjct: 348 MQMGIVAWGIG-CG 360

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  132 bits (334), Expect = 6e-35
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV--SKLRQIRV 342
           ALL L RP    D  +  +CL    +   +   +C A+GWG+ +        + L++I++
Sbjct: 233 ALLLLDRPLVQADN-IGTICLPQQSQIFDS--TECFASGWGKKEFGSRHRYSNILKKIQL 289

Query: 343 PLHNISVCRDKY-----GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL--KDGRWY 395
           P  +   C+        G    L    +C G   G    C GD G PL C       R+ 
Sbjct: 290 PTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYM 348

Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
             GI ++G GC     P VY  ++ +  WI +++
Sbjct: 349 QMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEM 382

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  202 bits (516), Expect = 5e-61
 Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 24/247 (9%)

Query: 17  GIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIH 76
           G+       ++  G+++  G +PWQV +                 L++ +WV+TAAH ++
Sbjct: 152 GLSARTTGGQIYGGQKAKPGDFPWQVLIL--------GGTTAAGALLYDNWVLTAAHAVY 203

Query: 77  NDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRP 133
                          +G   R        +   E + +HE +     + +DIAL+KL+  
Sbjct: 204 EQKHD---ASALDIRMGTLKRLSPH--YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNK 258

Query: 134 TSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCR 192
                  +  +CL     +  +       A+GWG  +  G L   L  + +P+ +   C 
Sbjct: 259 VVINSN-ITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCT 316

Query: 193 DKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGY 247
             Y       G      LC G   G   +C GDSGG L        RW++ GI S+GS  
Sbjct: 317 AAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMN 376

Query: 248 CGVGIRY 254
           CG   +Y
Sbjct: 377 CGEAGQY 383

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  131 bits (332), Expect = 1e-34
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 285 ALLKLSRPTSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 343
           AL+KL+         +  +CL     +  +       A+GWG  +  G L   L  + +P
Sbjct: 251 ALIKLNNKVVINSN-ITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIP 308

Query: 344 LHNISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAG 398
           + +   C   Y       G      LC G   G   +C GDSGG L        RW++ G
Sbjct: 309 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 368

Query: 399 ITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           I S+GS  C ++G   VYTK+  Y+PWI   I+
Sbjct: 369 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  196 bits (502), Expect = 5e-61
 Identities = 61/223 (27%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E    + P+   L+++         +CG  LI  ++V+TAAHC             
Sbjct: 2   IGGTECKPHSRPYMAYLEIVTSNGPS--KFCGGFLIRRNFVLTAAHCAGRS--------- 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
            T  LG  + TEEE +  ++ V +   H ++     HHDI LLKL    S     V  + 
Sbjct: 51  ITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKAS-LTLAVGTLP 109

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
                   V P + C   GWGR          L+++++ L +   C          H   
Sbjct: 110 FPSQFNF-VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRD---FDHNLQ 165

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
           LC G       A  GDSGGPL C          GI S+G    
Sbjct: 166 LCVGNPRKTKSAFKGDSGGPLLC-----AGVAQGIVSYGRSDA 203

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  128 bits (324), Expect = 6e-35
 Identities = 43/146 (29%), Positives = 57/146 (39%), Gaps = 12/146 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LLKL    S     V  +         V P + C   GWGR          L+++++ L
Sbjct: 91  MLLKLKEKAS-LTLAVGTLPFPSQFNF-VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRL 148

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C          H   LC G       A  GDSGGPL C          GI S+G 
Sbjct: 149 MDPQACSHFRD---FDHNLQLCVGNPRKTKSAFKGDSGGPLLC-----AGVAQGIVSYGR 200

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
             AK   P V+T++S Y PWI + + 
Sbjct: 201 SDAK--PPAVFTRISHYRPWINQILQ 224

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  195 bits (499), Expect = 1e-60
 Identities = 62/224 (27%), Positives = 89/224 (39%), Gaps = 25/224 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G+ES   + P+   LQ+  P        CG  L+   +V+TAAHC  ++         
Sbjct: 2   IGGRESRPHSRPYMAYLQIQSPA---GQSRCGGFLVREDFVLTAAHCWGSN--------- 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
               LG  +    E ++  I   R   H ++      +DI LL+LSR    R++ V  V 
Sbjct: 50  INVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVR-RNRNVNPVA 108

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L  A    + P   C   GWGRV         LR++++ +     C   +G         
Sbjct: 109 LPRAQ-EGLRPGTLCTVAGWGRVSM-RRGTDTLREVQLRVQRDRQCLRIFGSYD--PRRQ 164

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +C G       A  GDSGGPL C          GI S+G    G
Sbjct: 165 ICVGDRRERKAAFKGDSGGPLLC-----NNVAHGIVSYGKS-SG 202

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  129 bits (328), Expect = 2e-35
 Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 12/146 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LL+LSR    R++ V  V L  A    + P   C   GWGRV         LR++++ +
Sbjct: 90  MLLQLSRRVR-RNRNVNPVALPRAQ-EGLRPGTLCTVAGWGRVSM-RRGTDTLREVQLRV 146

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C   +G         +C G       A  GDSGGPL C          GI S+G 
Sbjct: 147 QRDRQCLRIFGSYD--PRRQICVGDRRERKAAFKGDSGGPLLC-----NNVAHGIVSYGK 199

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
                  P+V+T++S +LPWIR  + 
Sbjct: 200 SSGV--PPEVFTRVSSFLPWIRTTMR 223

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  195 bits (497), Expect = 2e-60
 Identities = 68/228 (29%), Positives = 103/228 (45%), Gaps = 33/228 (14%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E+   + P+  SLQ+   R     H+CG  LIHPS+V+TAAHC+ +         L
Sbjct: 2   VGGHEAQPHSRPYMASLQM---RGNPGSHFCGGTLIHPSFVLTAAHCLRD-----IPQRL 53

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHE-EFHNYHHDIALLKLSRP---TSARDKGVRA 143
              VLG  +   +E ++    V ++ ++  +  N  +DI L++LS P   +++    V  
Sbjct: 54  VNVVLGAHNVRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSAS----VAT 109

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
           V L   D +PV    QC+A GWGRV         L+++ V +     CR           
Sbjct: 110 VQLPQQD-QPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT-FFCRPH--------- 158

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
            ++C       +G C GDSGGPL C        + GI SF    C   
Sbjct: 159 -NICTFVPRRKAGICFGDSGGPLIC-----DGIIQGIDSFVIWGCATR 200

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  127 bits (322), Expect = 9e-35
 Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 25/149 (16%)

Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR 341
            L++LS P   +++    V  V L   D +PV    QC+A GWGRV         L+++ 
Sbjct: 93  LLIQLSSPANLSAS----VATVQLPQQD-QPVPHGTQCLAMGWGRVGAHDPPAQVLQELN 147

Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
           V +     CR            ++C       +G C GDSGGPL C        + GI S
Sbjct: 148 VTVVT-FFCRPH----------NICTFVPRRKAGICFGDSGGPLIC-----DGIIQGIDS 191

Query: 402 FGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
           F   GCA   +PD +T+++ Y+ WIR  +
Sbjct: 192 FVIWGCATRLFPDFFTRVALYVDWIRSTL 220

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  194 bits (496), Expect = 3e-60
 Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 32/226 (14%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+ +   AWP+ VSLQ+         H+CGA LI P++V++AAHC+ N          
Sbjct: 2   VGGRRARPHAWPFMVSLQLR------GGHFCGATLIAPNFVMSAAHCVAN-----VNVRA 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
              VLG  + +  E +     V+RI     +   N  +DI +L+L+   +  +  V+   
Sbjct: 51  VRVVLGAHNLSRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSAT-INANVQVAQ 108

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L    +R +    QC+A GWG +     + S L+++ V +   S+CR            +
Sbjct: 109 LPAQGRR-LGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRR----------SN 156

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
           +C       +G C GDSG PL C        + GI SF  G C  G
Sbjct: 157 VCTLVRGRQAGVCFGDSGSPLVC-----NGLIHGIASFVRGGCASG 197

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  130 bits (329), Expect = 1e-35
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 19/146 (13%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            +L+L+   +  +  V+   L    +R +    QC+A GWG +     + S L+++ V +
Sbjct: 90  VILQLNGSAT-INANVQVAQLPAQGRR-LGNGVQCLAMGWGLLGRNRGIASVLQELNVTV 147

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
              S+CR            ++C       +G C GDSG PL C        + GI SF  
Sbjct: 148 VT-SLCRR----------SNVCTLVRGRQAGVCFGDSGSPLVC-----NGLIHGIASFVR 191

Query: 405 -GCAKSGYPDVYTKLSFYLPWIRKQI 429
            GCA   YPD +  ++ ++ WI   I
Sbjct: 192 GGCASGLYPDAFAPVAQFVNWIDSII 217

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  204 bits (520), Expect = 5e-60
 Identities = 72/243 (29%), Positives = 103/243 (42%), Gaps = 23/243 (9%)

Query: 13  DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
            CGV  R   R+ R++ GK +  G  PWQV+++            CG + I   W++TAA
Sbjct: 308 SCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASG------ITCGGIYIGGCWILTAA 361

Query: 73  HCIHNDIFSLPIPELWTAVLGDWDRTE-EEKSEVRIPVERIRVHEEFH--NYHHDIALLK 129
           HC+            +       D    + K  V   V+RI  HE ++   Y +DIAL++
Sbjct: 362 HCLRA-----SKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIE 416

Query: 130 LSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 186
           + +               C+  +      P   C+ +GWGR K     V  L+   V L 
Sbjct: 417 MKKDGNKKDCELPRSIPACVPWSP-YLFQPNDTCIVSGWGREKDNER-VFSLQWGEVKL- 473

Query: 187 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
            IS C   YG+         C G  DG   AC GDSGGPL C   +   Y+ G+ S+G  
Sbjct: 474 -ISNCSKFYGNRF-YEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGEN 531

Query: 247 YCG 249
            CG
Sbjct: 532 -CG 533

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  141 bits (358), Expect = 3e-37
 Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 8/149 (5%)

Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR 341
           AL+++ +               C+  +      P   C+ +GWGR K     V  L+   
Sbjct: 413 ALIEMKKDGNKKDCELPRSIPACVPWSP-YLFQPNDTCIVSGWGREKDNER-VFSLQWGE 470

Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
           V L  IS C   YG+         C G  DG   AC GDSGGPL C   +   Y+ G+ S
Sbjct: 471 VKL--ISNCSKFYGNRF-YEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVS 527

Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           +G  C K  +P VYTK++ Y  WI   + 
Sbjct: 528 WGENCGKPEFPGVYTKVANYFDWISYHVG 556

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  193 bits (494), Expect = 9e-60
 Identities = 59/224 (26%), Positives = 84/224 (37%), Gaps = 24/224 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G     G  PW VSL+    +     H+CG  L+   W++TA  C  +          
Sbjct: 2   VGGHP---GNSPWTVSLRNRQGQ-----HFCGGSLVKEQWILTARQCFSS---CHMPLTG 50

Query: 88  WTAVLGDW--DRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
           +   LG    +    E S  R+PV ++            + LLKL R  +   + V  +C
Sbjct: 51  YEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG----SQLVLLKLERSVTLNQR-VALIC 105

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L       V P  +C   GWG  K  G+  + L    + + +   C  K+   V      
Sbjct: 106 LPPEWYV-VPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIKHRGRV--RESE 161

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +C   L    GAC GD GGPL C      W L GI       C 
Sbjct: 162 MCTEGLLAPVGACEGDYGGPLAC-FTHNSWVLEGIIIPNRV-CA 203

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  140 bits (355), Expect = 3e-39
 Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 6/145 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LLKL R  +   + V  +CL       V P  +C   GWG  K  G+  + L    + +
Sbjct: 87  VLLKLERSVTLNQR-VALICLPPEWYV-VPPGTKCEIAGWGETKGTGN-DTVLNVALLNV 143

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C  K+   V      +C   L    GAC GD GGPL C      W L GI     
Sbjct: 144 ISNQECNIKHRGRV--RESEMCTEGLLAPVGACEGDYGGPLAC-FTHNSWVLEGIIIPNR 200

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
            CA+S +P V+T++S ++ WI K +
Sbjct: 201 VCARSRWPAVFTRVSVFVDWIHKVM 225

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  193 bits (492), Expect = 1e-59
 Identities = 67/225 (29%), Positives = 98/225 (43%), Gaps = 29/225 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E++  +WP Q +L +         ++CG  LI P W++TAAHC+            
Sbjct: 2   VGGVEAVPNSWPHQAALFID------DMYFCGGSLISPEWILTAAHCMDG-------AGF 48

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
              VLG  +  E+E ++V I      VHE +      +DIA+++L  P +     +  V 
Sbjct: 49  VDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAA-IATVG 107

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDSVELHGG 204
           L   D   V        TGWG        +S  LRQ+ VP+ + + C   YG    +  G
Sbjct: 108 LPSTD---VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG---IVTDG 161

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           ++C     G  G C GDSGGPL            GITSFG+    
Sbjct: 162 NICIDSTGG-KGTCNGDSGGPLNY-----NGLTYGITSFGAAAGC 200

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  124 bits (314), Expect = 2e-33
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 15/149 (10%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVP 343
           A+++L  P +     +  V L   D   V        TGWG        +S  LRQ+ VP
Sbjct: 89  AVIRLPVPVTLTAA-IATVGLPSTD---VGVGTVVTPTGWGLPSDSALGISDVLRQVDVP 144

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           + + + C   YG    +  G++C     G  G C GDSGGPL  +         GITSFG
Sbjct: 145 IMSNADCDAVYG---IVTDGNICIDSTGG-KGTCNGDSGGPLNYN-----GLTYGITSFG 195

Query: 404 SG-CAKSGYPDVYTKLSFYLPWIRKQINI 431
           +    ++GYPD +T+++++L WI+ Q  I
Sbjct: 196 AAAGCEAGYPDAFTRVTYFLDWIQTQTGI 224

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  193 bits (492), Expect = 2e-59
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 22/224 (9%)

Query: 30  GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT 89
           G+++     PW V+++            CG  ++   +V+TAAHC+ +       PE   
Sbjct: 3   GEKTDIKQVPWTVAVRTYPGEES---LTCGGAILSQWFVLTAAHCVFD-----QKPETIV 54

Query: 90  AVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLT 147
                 +  E+       P         +      +DIA+L+LSRP        +   L 
Sbjct: 55  IQYESTNLWEDP--GKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLP 112

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
           D + RP       + +G+G  +        L+  ++ + ++  CR KYG    L     C
Sbjct: 113 DIEFRPK-TGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPI-FLSLQVFC 170

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
             +         GD+G P        +  L G+ ++       G
Sbjct: 171 AQK--VGVSLESGDAGDPTVQ-----QDTLVGVAAYFPK-RPEG 206

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  140 bits (355), Expect = 2e-39
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 10/145 (6%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           A+L+LSRP        +   L D + RP       + +G+G  +        L+  ++ +
Sbjct: 91  AILELSRPLKLDGLKSKPAKLPDIEFRPK-TGSDVLVSGYGDGQTMDPKDHDLKSAQLTV 149

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            ++  CR KYG    L     C  +         GD+G P        +  L G+ ++  
Sbjct: 150 VDLDECRTKYGPI-FLSLQVFCAQK--VGVSLESGDAGDPTVQ-----QDTLVGVAAYFP 201

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
              + G P+V+TK+  Y+ WI+  I
Sbjct: 202 KRPE-GAPEVFTKVGSYVSWIQDII 225

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  193 bits (493), Expect = 2e-59
 Identities = 61/224 (27%), Positives = 89/224 (39%), Gaps = 23/224 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           +NG  + R    W VSL+  +       H CG  LI  SWV+TA  C  +        + 
Sbjct: 2   VNGIPT-RTNIGWMVSLRYRNK------HICGGSLIKESWVLTARQCFPS-----RDLKD 49

Query: 88  WTAVLGDWD--RTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
           + A LG  D     +EK +  + V ++    E      D+ L+KL+RP    D  V  + 
Sbjct: 50  YEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGS----DLVLMKLARPAVLDDF-VSTID 104

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L +     +  K  C   GWG      +    LR   + +     C   +   V L+   
Sbjct: 105 LPNYGST-IPEKTSCSVYGWGYTGL-INYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESE 162

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           +C G     SG C GD GGPL C  +     + G+   G G C 
Sbjct: 163 ICAGAEKIGSGPCEGDYGGPLVCE-QHKMRMVLGVIVPGRG-CA 204

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  141 bits (358), Expect = 1e-39
 Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 4/145 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            L+KL+RP    D  V  + L +     +  K  C   GWG      +    LR   + +
Sbjct: 86  VLMKLARPAVLDDF-VSTIDLPNYGST-IPEKTSCSVYGWGYTGL-INYDGLLRVAHLYI 142

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C   +   V L+   +C G     SG C GD GGPL C  +     + G+   G 
Sbjct: 143 MGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCE-QHKMRMVLGVIVPGR 201

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA    P ++ ++++Y  WI K I
Sbjct: 202 GCAIPNRPGIFVRVAYYAKWIHKII 226

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  194 bits (496), Expect = 8e-59
 Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 40/256 (15%)

Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CGV       + R+I G ++    +PWQV              W G  LI+  WV+TAAH
Sbjct: 70  CGVPREPFEEKQRIIGGSDADIKNFPWQVFFDN---------PWAGGALINEYWVLTAAH 120

Query: 74  CIHNDIFSLPIPELWTAVLGDWD-RTEEEKSEVRIPVERIRVHEEF---------HNYHH 123
            +             T  +G    +T        +  E + +H  +          N+ +
Sbjct: 121 VVEG-------NREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDN 173

Query: 124 DIALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIR 182
           DIAL++L  P       V  +CL               + +GWGR + K D   +L+  R
Sbjct: 174 DIALVRLKDPVKMGPT-VSPICLPGTSSDYNLMDGDLGLISGWGRTE-KRDRAVRLKAAR 231

Query: 183 VPLHNISVCRDKYGDSVELHGGH-------LCGGQLDGFSGACIGDSGGPLQC--SLKDG 233
           +P+  +  C++   +               +C G   G   +C GDSGG           
Sbjct: 232 LPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMD-SCKGDSGGAFAVQDPNDKT 290

Query: 234 RWYLAGITSFGSGYCG 249
           ++Y AG+ S+G   CG
Sbjct: 291 KFYAAGLVSWGPQ-CG 305

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  127 bits (322), Expect = 1e-33
 Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 16/156 (10%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
           AL++L  P       V  +CL               + +GWGR + K D   +L+  R+P
Sbjct: 176 ALVRLKDPVKMGPT-VSPICLPGTSSDYNLMDGDLGLISGWGRTE-KRDRAVRLKAARLP 233

Query: 344 LHNISVCRDKYGDSVELHGGH-------LCGGQLDGFSGACIGDSGGPLQC--SLKDGRW 394
           +  +  C++   +               +C G   G   +C GDSGG           ++
Sbjct: 234 VAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMD-SCKGDSGGAFAVQDPNDKTKF 292

Query: 395 YLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           Y AG+ S+G  C       +YT++  Y+ WI K + 
Sbjct: 293 YAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQ 325

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  191 bits (487), Expect = 8e-59
 Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 27/225 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G     G  PWQ  L            +CG  ++   +++TAAHC++         + 
Sbjct: 2   VGGYNCKDGEVPWQALLINEENE-----GFCGGTILSEFYILTAAHCLYQ-------AKR 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
           +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V    
Sbjct: 50  FKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN-VAPAS 108

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGG 204
           L  A   P     +C+ +GWG     G      L+ +  P+ + + C   Y   +     
Sbjct: 109 LPTA---PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKI--TSN 163

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             C G L+G   +C GDSGGP+ C        L G+ S+G G C 
Sbjct: 164 MFCVGFLEGGKDSCQGDSGGPVVC-----NGQLQGVVSWGDG-CA 202

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  129 bits (326), Expect = 3e-35
 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
           A+L+L  P + R   V    L  A   P     +C+ +GWG     G      L+ +  P
Sbjct: 90  AVLRLKTPITFRMN-VAPASLPTA---PPATGTKCLISGWGNTASSGADYPDELQCLDAP 145

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           + + + C   Y   +       C G L+G   +C GDSGGP+ C        L G+ S+G
Sbjct: 146 VLSQAKCEASYPGKI--TSNMFCVGFLEGGKDSCQGDSGGPVVC-----NGQLQGVVSWG 198

Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            GCA+   P VYTK+  Y+ WI+  I 
Sbjct: 199 DGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  191 bits (487), Expect = 9e-59
 Identities = 61/227 (26%), Positives = 89/227 (39%), Gaps = 26/227 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E    + P+ V L +           C   LI   WV+TAAHC  N          
Sbjct: 2   IGGNEVTPHSRPYMVLLSLD------RKTICAGALIAKDWVLTAAHCNLNKR-------- 47

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
              +LG    T EE ++  + V++   +  +       D+ LL+L+      +K V  + 
Sbjct: 48  SQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAK-INKYVTILH 106

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV--ELHG 203
           L       V P   C   GWGR          LR++ + + +  VC D+   +    +  
Sbjct: 107 LPKKGD-DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGM 165

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
             +C G L G   +C GDSG PL C          G+TSFG    CG
Sbjct: 166 NMVCAGSLRGGRDSCNGDSGSPLLC-----EGVFRGVTSFGLENKCG 207

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  129 bits (328), Expect = 2e-35
 Identities = 47/154 (30%), Positives = 63/154 (40%), Gaps = 12/154 (7%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LL+L+      +K V  + L       V P   C   GWGR          LR++ + +
Sbjct: 88  KLLQLTEKAK-INKYVTILHLPKKGD-DVKPGTMCQVAGWGRTHNSASWSDTLREVEITI 145

Query: 345 HNISVCRDKYGDSV--ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
            +  VC D+   +    +    +C G L G   +C GDSG PL C          G+TSF
Sbjct: 146 IDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLC-----EGVFRGVTSF 200

Query: 403 GS--GCAKSGYPDVYTKLSF-YLPWIRKQINIAV 433
           G    C     P VY  LS  +L WI   I  AV
Sbjct: 201 GLENKCGDPRGPGVYILLSKKHLNWIIMTIKGAV 234

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  190 bits (486), Expect = 2e-58
 Identities = 59/227 (25%), Positives = 83/227 (36%), Gaps = 27/227 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E       + V+L     R      +CG  LI+  WV+TAAHC           + 
Sbjct: 2   IGGDECNINEHRFLVALYTSRSRT----LFCGGTLINQEWVLTAAHC---------DRKN 48

Query: 88  WTAVLGDWDRTEEEKSE-VRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
           +   LG   +    + E  R+P E+           +  DI L++L  P       +   
Sbjct: 49  FRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKH-IAPF 107

Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKY-GDSVELH 202
            L  +   P +    C   GWGR+ P           + + L    +CR  Y    +   
Sbjct: 108 SLPSS---PPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPAT 164

Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              LC G L+G    C GDSGGPL C          GI S+G   C 
Sbjct: 165 SRTLCAGILEGGKDTCKGDSGGPLIC-----NGQFQGIASWGDDPCA 206

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  125 bits (317), Expect = 7e-34
 Identities = 43/148 (29%), Positives = 58/148 (39%), Gaps = 12/148 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            L++L  P       +    L  +   P +    C   GWGR+ P           + + 
Sbjct: 90  MLIRLDSPVKNSKH-IAPFSLPSS---PPSVGSVCRIMGWGRISPTEGTYPDVPHCVNIN 145

Query: 344 LHNISVCRDKY-GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
           L    +CR  Y    +      LC G L+G    C GDSGGPL C          GI S+
Sbjct: 146 LLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLIC-----NGQFQGIASW 200

Query: 403 GSG-CAKSGYPDVYTKLSFYLPWIRKQI 429
           G   CA+   P  YTK+  +L WI   I
Sbjct: 201 GDDPCAQPHKPAAYTKVFDHLDWIENII 228

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  188 bits (481), Expect = 6e-58
 Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 28/226 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + GK++  G +P+QVSL++         H CGA ++  + V+TAAHC+      L     
Sbjct: 2   VGGKDAPVGKYPYQVSLRLSGS------HRCGASILDNNNVLTAAHCVD----GLSNLNR 51

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
               +G    +E   S     VE   V++ +      +D+AL+ L+ P    D  V+ + 
Sbjct: 52  LKVHVGTNYLSE---SGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDL-VQPIK 107

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L+  D+   +    C  TGWG  +  G+  + L++I + +H    C         +   H
Sbjct: 108 LSTNDEDLES--NPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVIDSH 162

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
           +C     G  GAC GDSGGPL            GI SFGS  C +G
Sbjct: 163 ICTLTKRG-EGACHGDSGGPLVA-----NGAQIGIVSFGSP-CALG 201

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  136 bits (344), Expect = 7e-38
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           AL+ L+ P    D  V+ + L+  D+   +    C  TGWG  +  G+  + L++I + +
Sbjct: 89  ALVHLTNPIKFNDL-VQPIKLSTNDEDLES--NPCTLTGWGSTRLGGNTPNALQEIELIV 145

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
           H    C         +   H+C     G  GAC GDSGGPL            GI SFGS
Sbjct: 146 HPQKQCERDQW---RVIDSHICTLTKRG-EGACHGDSGGPLVA-----NGAQIGIVSFGS 196

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
            CA  G PDVYT++S ++ WI   +
Sbjct: 197 PCAL-GEPDVYTRVSSFVSWINANL 220

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  188 bits (480), Expect = 1e-57
 Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 28/229 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           ING E+  G +P+Q  L +          WCG  LI   W++TAAHC+H+          
Sbjct: 2   INGYEAYTGLFPYQAGLDITLQDQRR--VWCGGSLIDNKWILTAAHCVHD-------AVS 52

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPT-SARDKGVRAV 144
               LG   + E    E  +  ERI  H  F    Y +D+AL+K+     +     ++ +
Sbjct: 53  VVVYLGSAVQYE---GEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDN---IQPI 106

Query: 145 CL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
            L +  +            +GWG+      +   L+     + +   C  +Y   + +  
Sbjct: 107 RLPSGEELNNKFENIWATVSGWGQSNTDTVI---LQYTYNLVIDNDRCAQEYPPGI-IVE 162

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CGVG 251
             +CG         C GDSGGP        +  L G+ SF SG  C  G
Sbjct: 163 STICGD-TSDGKSPCFGDSGGPFVL---SDKNLLIGVVSFVSGAGCESG 207

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  125 bits (317), Expect = 7e-34
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 16/152 (10%)

Query: 285 ALLKLSRPT-SARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           AL+K+     +     ++ + L +  +            +GWG+      +   L+    
Sbjct: 90  ALIKIPHVEYTDN---IQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVI---LQYTYN 143

Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
            + +   C  +Y   + +    +CG         C GDSGGP        +  L G+ SF
Sbjct: 144 LVIDNDRCAQEYPPGI-IVESTICGD-TSDGKSPCFGDSGGPFVL---SDKNLLIGVVSF 198

Query: 403 GS--GCAKSGYPDVYTKLSFYLPWIRKQINIA 432
            S  GC   G P  +++++ Y+ WI++   I 
Sbjct: 199 VSGAGCES-GKPVGFSRVTSYMDWIQQNTGIK 229

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  187 bits (478), Expect = 2e-57
 Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 23/223 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G  +  G +P+ VS+     R G    WCG  L++ + V+TAAHC+            
Sbjct: 2   VGGTSASAGDFPFIVSIS----RNGG--PWCGGSLLNANTVLTAAHCVSG-----YAQSG 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
           +    G   RT      +   +  +RVH  +   ++D+A+LKLS         +    L 
Sbjct: 51  FQIRAGSLSRTS---GGITSSLSSVRVHPSYSGNNNDLAILKLSTSIP-SGGNIGYARLA 106

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHL 206
            +   PV         GWG     G      L ++ VP+ + + CR +YG S  +     
Sbjct: 107 ASGSDPV-AGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS-AITNQMF 164

Query: 207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           C G   G   +C GDSGGP+          L G  S+G+G C 
Sbjct: 165 CAGVSSGGKDSCQGDSGGPIVD----SSNTLIGAVSWGNG-CA 202

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  129 bits (326), Expect = 3e-35
 Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 8/144 (5%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
           A+LKLS         +    L  +   PV         GWG     G      L ++ VP
Sbjct: 86  AILKLSTSIP-SGGNIGYARLAASGSDPV-AGSSATVAGWGATSEGGSSTPVNLLKVTVP 143

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           + + + CR +YG S  +     C G   G   +C GDSGGP+          L G  S+G
Sbjct: 144 IVSRATCRAQYGTS-AITNQMFCAGVSSGGKDSCQGDSGGPIVD----SSNTLIGAVSWG 198

Query: 404 SGCAKSGYPDVYTKLSFYLPWIRK 427
           +GCA+  Y  VY  +     +I  
Sbjct: 199 NGCARPNYSGVYASVGALRSFIDT 222

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  187 bits (477), Expect = 3e-57
 Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 40/238 (16%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
             +  +     + PW V++   +       + CG VL+  +WV+TAAHC ++        
Sbjct: 3   PPVQSQVDCENSQPWHVAVYRFNK------YQCGGVLLDRNWVLTAAHCYNDK------- 49

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSR 132
             +   LG  +  E+E S+    V +   H +F              +Y +D+ LL+LS+
Sbjct: 50  --YQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSK 107

Query: 133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVC 191
           P       V+ + L             C+A+GWG   P        L+ + + L     C
Sbjct: 108 PAD-ITDVVKPITLPT---EEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDC 163

Query: 192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              +   V      LC G++DG S  C  DSGGPL C        L GITS+G   CG
Sbjct: 164 DKAHEMKV--TDAMLCAGEMDGGSYTCEHDSGGPLIC-----DGILQGITSWGPEPCG 214

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  127 bits (322), Expect = 2e-34
 Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            LL+LS+P       V+ + L             C+A+GWG   P        L+ + + 
Sbjct: 101 MLLRLSKPAD-ITDVVKPITLPT---EEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLK 156

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L     C   +   V      LC G++DG S  C  DSGGPL C        L GITS+G
Sbjct: 157 LLPNEDCDKAHEMKV--TDAMLCAGEMDGGSYTCEHDSGGPLIC-----DGILQGITSWG 209

Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
              C +   P VYTKL  +  WIR+ +
Sbjct: 210 PEPCGEPTEPSVYTKLIKFSSWIRETM 236

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  186 bits (474), Expect = 7e-57
 Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 30/225 (13%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           ING++    + PWQ +L + +        +C  VL+HP WV++AAHC  N          
Sbjct: 2   INGEDCSPHSQPWQAALVMENE------LFCSGVLVHPQWVLSAAHCFQNS--------- 46

Query: 88  WTAVLGDWD-RTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
           +T  LG      ++E     +       H E+      +D+ L+KL    S     +R++
Sbjct: 47  YTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVS-ESDTIRSI 105

Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            +     +       C+ +GWG +   G + + L+ + V + +  VC   Y      H  
Sbjct: 106 SIA---SQCPTAGNSCLVSGWGLLAN-GRMPTVLQCVNVSVVSEEVCSKLYDPLY--HPS 159

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             C G       +C GDSGGPL C       YL G+ SFG   CG
Sbjct: 160 MFCAGGGQDQKDSCNGDSGGPLIC-----NGYLQGLVSFGKAPCG 199

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  126 bits (320), Expect = 2e-34
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            L+KL    S     +R++ +     +       C+ +GWG +   G + + L+ + V +
Sbjct: 88  MLIKLDESVS-ESDTIRSISIA---SQCPTAGNSCLVSGWGLLAN-GRMPTVLQCVNVSV 142

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +  VC   Y      H    C G       +C GDSGGPL C       YL G+ SFG 
Sbjct: 143 VSEEVCSKLYDPLY--HPSMFCAGGGQDQKDSCNGDSGGPLIC-----NGYLQGLVSFGK 195

Query: 405 G-CAKSGYPDVYTKLSFYLPWIRKQIN 430
             C + G P VYT L  +  WI K + 
Sbjct: 196 APCGQVGVPGVYTNLCKFTEWIEKTVQ 222

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  186 bits (475), Expect = 7e-57
 Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 42/236 (17%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G +  + + PWQV++   +         CG VLI PSWV+TAAHC  N+         
Sbjct: 2   VGGYKCEKNSQPWQVAVINEY--------LCGGVLIDPSWVITAAHCYSNN--------- 44

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRPT 134
           +  +LG  +  ++E    R  V +   H ++             H++ +D+ LL LS P 
Sbjct: 45  YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPA 104

Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRD 193
                GV+ + L   +         C+A+GWG   P   +VS  L+ + + L +   C +
Sbjct: 105 D-ITGGVKVIDLPTKE---PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIE 160

Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            Y D+V      LC G+++G    C GDSGGPL C        L GITS G+  C 
Sbjct: 161 TYKDNV--TDVMLCAGEMEGGKDTCAGDSGGPLIC-----DGVLQGITSGGATPCA 209

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  127 bits (322), Expect = 1e-34
 Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            LL LS P      GV+ + L   +         C+A+GWG   P   +VS  L+ + + 
Sbjct: 96  MLLHLSEPAD-ITGGVKVIDLPTKE---PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIH 151

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L +   C + Y D+V      LC G+++G    C GDSGGPL C        L GITS G
Sbjct: 152 LLSNEKCIETYKDNV--TDVMLCAGEMEGGKDTCAGDSGGPLIC-----DGVLQGITSGG 204

Query: 404 SG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
           +  CAK   P +Y KL  +  WI+K + 
Sbjct: 205 ATPCAKPKTPAIYAKLIKFTSWIKKVMK 232

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  185 bits (472), Expect = 1e-56
 Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 30/224 (13%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E    + P QVSL           H+CG  L++ +WVV+AAHC             
Sbjct: 2   VGGYECKAYSQPHQVSLN-------SGYHFCGGSLVNENWVVSAAHC---------YKSR 45

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
               LG+ +    E SE  I   R+  H  +  +N  +DI L+KLS+P +     V+ V 
Sbjct: 46  VEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTY-VQPVA 104

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L  +          C  +GWG         +KL+ + +P+ + S C + Y   +      
Sbjct: 105 LPTSC---APAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMI--TNAM 159

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            C G L+G   +C GDSGGP+ C        L G+ S+G G C 
Sbjct: 160 FCAGYLEGGKDSCQGDSGGPVVC-----NGELQGVVSWGYG-CA 197

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  131 bits (331), Expect = 5e-36
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 11/145 (7%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            L+KLS+P +     V+ V L  +          C  +GWG         +KL+ + +P+
Sbjct: 86  MLIKLSKPATLNTY-VQPVALPTSC---APAGTMCTVSGWGNTMSSTADSNKLQCLNIPI 141

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            + S C + Y   +       C G L+G   +C GDSGGP+ C        L G+ S+G 
Sbjct: 142 LSYSDCNNSYPGMI--TNAMFCAGYLEGGKDSCQGDSGGPVVC-----NGELQGVVSWGY 194

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+ G P VY K+  +  W+   +
Sbjct: 195 GCAEPGNPGVYAKVCIFNDWLTSTM 219

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  185 bits (471), Expect = 2e-56
 Identities = 66/225 (29%), Positives = 91/225 (40%), Gaps = 31/225 (13%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I+G    RG+ PWQV+L   +         CG VL++  WV+TAAHC  N+         
Sbjct: 2   IDGAPCARGSHPWQVALLSGNQ------LHCGGVLVNERWVLTAAHCKMNE--------- 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
           +T  LG     +      RI   +   H  +    + +D+ L+KL+         V+ V 
Sbjct: 47  YTVHLGSDTLGDRR--AQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSM-VKKVR 103

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGG 204
           L         P   C  +GWG            L  + V L +   C   Y D +     
Sbjct: 104 LPSR---CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLL--ENS 158

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            LC G  D    AC GDSGGPL C     R  L G+ S+G+  CG
Sbjct: 159 MLCAGIPDSKKNACNGDSGGPLVC-----RGTLQGLVSWGTFPCG 198

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  128 bits (323), Expect = 8e-35
 Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            L+KL+         V+ V L         P   C  +GWG            L  + V 
Sbjct: 85  MLVKLNSQARLSSM-VKKVRLPSR---CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVK 140

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L +   C   Y D +      LC G  D    AC GDSGGPL C     R  L G+ S+G
Sbjct: 141 LISPQDCTKVYKDLL--ENSMLCAGIPDSKKNACNGDSGGPLVC-----RGTLQGLVSWG 193

Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
           +  C +   P VYT++  +  WI   +
Sbjct: 194 TFPCGQPNDPGVYTQVCKFTKWINDTM 220

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  184 bits (469), Expect = 4e-56
 Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 29/224 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           ++G    + + P+Q +L             CG VLIHP WV+TAAHC   +         
Sbjct: 2   VHGGPCDKTSHPYQAALYTSGH------LLCGGVLIHPLWVLTAAHCKKPN--------- 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
               LG  +  + E S+ +  V R  +H ++   ++  DI LL+L+RP    +  ++ + 
Sbjct: 47  LQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSEL-IQPLP 105

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L             C   GWG+    GD    ++   + L +   C   Y   +      
Sbjct: 106 LER---DCSANTTSCHILGWGKTAD-GDFPDTIQCAYIHLVSREECEHAYPGQI--TQNM 159

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           LC G       +C GDSGGPL C       +L G+ S+G+  CG
Sbjct: 160 LCAGDEKYGKDSCQGDSGGPLVC-----GDHLRGLVSWGNIPCG 198

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  122 bits (309), Expect = 8e-33
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            LL+L+RP    +  ++ + L             C   GWG+    GD    ++   + L
Sbjct: 87  MLLRLARPAKLSEL-IQPLPLER---DCSANTTSCHILGWGKTAD-GDFPDTIQCAYIHL 141

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
            +   C   Y   +      LC G       +C GDSGGPL C       +L G+ S+G+
Sbjct: 142 VSREECEHAYPGQI--TQNMLCAGDEKYGKDSCQGDSGGPLVC-----GDHLRGLVSWGN 194

Query: 405 -GCAKSGYPDVYTKLSFYLPWIRKQI 429
             C     P VYT +  Y  WI+K I
Sbjct: 195 IPCGSKEKPGVYTNVCRYTNWIQKTI 220

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  184 bits (470), Expect = 4e-56
 Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 39/236 (16%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E  + + PWQ +L             CG +L+H  WV+TAAHCI ++         
Sbjct: 2   VGGWECEQHSQPWQAALYHF------STFQCGGILVHRQWVLTAAHCISDN--------- 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRPT 134
           +   LG  +  ++E +   + V     H  F              +Y HD+ LL+L+ P 
Sbjct: 47  YQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPA 106

Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRD 193
                 V+ V L   +         C+A+GWG ++P+       L+ + + +     C+ 
Sbjct: 107 DTITDAVKVVELPTEE---PEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKK 163

Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            +   V      LC G L+G    C+GDSGGPL C        L G+TS+G   CG
Sbjct: 164 AHVQKV--TDFMLCVGHLEGGKDTCVGDSGGPLMC-----DGVLQGVTSWGYVPCG 212

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  130 bits (328), Expect = 2e-35
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVP 343
            LL+L+ P       V+ V L   +         C+A+GWG ++P+       L+ + + 
Sbjct: 98  MLLRLTEPADTITDAVKVVELPTEE---PEVGSTCLASGWGSIEPENFSFPDDLQCVDLK 154

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +     C+  +   V      LC G L+G    C+GDSGGPL C        L G+TS+G
Sbjct: 155 ILPNDECKKAHVQKV--TDFMLCVGHLEGGKDTCVGDSGGPLMC-----DGVLQGVTSWG 207

Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
              C     P V  ++  Y+ WI   I
Sbjct: 208 YVPCGTPNKPSVAVRVLSYVKWIEDTI 234

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  183 bits (467), Expect = 8e-56
 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 33/228 (14%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+E I  + PWQ +L             CG VL+   WV+TAAHC             
Sbjct: 2   LEGRECIPHSQPWQAALFQGER------LICGGVLVGDRWVLTAAHCKKQK--------- 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN-----YHHDIALLKLSRPTSARDKGVR 142
           ++  LGD      ++ E  I V +   H  ++N     + HDI L++L    +     V+
Sbjct: 47  YSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSAN-LGDKVK 105

Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVEL 201
            V L +         Q+C+ +GWG V    +     L    V +++ + C   Y   +  
Sbjct: 106 PVQLAN---LCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKI-- 160

Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             G +C G     +  C GDSGGPL C        L GITS+GS  CG
Sbjct: 161 TEGMVCAG-SSNGADTCQGDSGGPLVC-----DGMLQGITSWGSDPCG 202

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  124 bits (314), Expect = 1e-33
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            L++L    +     V+ V L +         Q+C+ +GWG V    +     L    V 
Sbjct: 90  MLIRLQNSAN-LGDKVKPVQLAN---LCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVK 145

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           +++ + C   Y   +    G +C G     +  C GDSGGPL C        L GITS+G
Sbjct: 146 IYSQNKCERAYPGKI--TEGMVCAG-SSNGADTCQGDSGGPLVC-----DGMLQGITSWG 197

Query: 404 SG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
           S  C K   P VYTK+  Y  WI+K ++
Sbjct: 198 SDPCGKPEKPGVYTKICRYTTWIKKTMD 225

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  183 bits (466), Expect = 1e-55
 Identities = 54/225 (24%), Positives = 77/225 (34%), Gaps = 27/225 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E      P+ V+L             C   LI+  WV+TAAHC   +         
Sbjct: 2   VGGDECNINEHPFLVALY----TSASSTIHCAGALINREWVLTAAHCDRRN--------- 48

Query: 88  WTAVLGDWDRTEEEKSE-VRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
               LG   +    + E +R+P  +         +    DI L++L RP +     +  V
Sbjct: 49  IRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTH-IAPV 107

Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L            +C   GWG++              + +     C   Y         
Sbjct: 108 SLPSR---SRGVGSRCRIMGWGKIST-TTYPDVPHCTNIFIVKHKWCEPLYPWV-PADSR 162

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            LC G L G    C GDSGGPL C        + GI + GS  CG
Sbjct: 163 TLCAGILKGGRDTCHGDSGGPLIC-----NGEMHGIVAGGSEPCG 202

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  123 bits (312), Expect = 3e-33
 Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 12/147 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
            L++L RP +     +  V L            +C   GWG++              + +
Sbjct: 90  MLIRLRRPVTYSTH-IAPVSLPSR---SRGVGSRCRIMGWGKIST-TTYPDVPHCTNIFI 144

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
                C   Y          LC G L G    C GDSGGPL C        + GI + GS
Sbjct: 145 VKHKWCEPLYPWV-PADSRTLCAGILKGGRDTCHGDSGGPLIC-----NGEMHGIVAGGS 198

Query: 405 -GCAKSGYPDVYTKLSFYLPWIRKQIN 430
             C +   P VYTK+  Y  WI+  I 
Sbjct: 199 EPCGQHLKPAVYTKVFDYNNWIQSIIA 225

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  182 bits (465), Expect = 1e-55
 Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 31/225 (13%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G        P+QVSL           H+CG  LI+  WVV+AAHC  +          
Sbjct: 2   VGGYTCGANTVPYQVSLN-------SGYHFCGGSLINSQWVVSAAHCYKSG--------- 45

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
               LG+ +    E +E  I   +  VH  +  +  ++DI L+KL    S   + V ++ 
Sbjct: 46  IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASIS 104

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGG 204
           L  +     +   QC+ +GWG  K  G      L+ ++ P+ + S C+  Y   +     
Sbjct: 105 LPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQI--TSN 159

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             C G L+G   +C GDSGGP+ C        L GI S+GSG C 
Sbjct: 160 MFCAGYLEGGKDSCQGDSGGPVVC-----SGKLQGIVSWGSG-CA 198

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  128 bits (323), Expect = 8e-35
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            L+KL    S   + V ++ L  +     +   QC+ +GWG  K  G      L+ ++ P
Sbjct: 86  MLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAP 141

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           + + S C+  Y   +       C G L+G   +C GDSGGP+ C        L GI S+G
Sbjct: 142 ILSDSSCKSAYPGQI--TSNMFCAGYLEGGKDSCQGDSGGPVVC-----SGKLQGIVSWG 194

Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           SGCA+   P VYTK+  Y+ WI++ I 
Sbjct: 195 SGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  183 bits (466), Expect = 1e-55
 Identities = 65/236 (27%), Positives = 95/236 (40%), Gaps = 40/236 (16%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G    + + PWQV++           H CG VL+  +WV+TAAHC  +          
Sbjct: 2   VGGFNCEKNSQPWQVAVYYQKE------HICGGVLLDRNWVLTAAHCYVDQ--------- 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRPT 134
           +   LG     +EE S     V +   H  F              ++  D+ LL+LS+P 
Sbjct: 47  YEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPA 106

Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRD 193
              D  V+ + L   +     P  +C+A+GWG + P        L+ + + L     C  
Sbjct: 107 DITDV-VKPIALPTKE---PKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAK 162

Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            Y   V      LC G++ G    C  DSGGPL C        L G TS+G   CG
Sbjct: 163 VYLQKV--TDVMLCAGEMGGGKDTCRDDSGGPLIC-----DGILQGTTSYGPVPCG 211

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  126 bits (320), Expect = 3e-34
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 13/147 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            LL+LS+P    D  V+ + L   +     P  +C+A+GWG + P        L+ + + 
Sbjct: 98  MLLRLSKPADITDV-VKPIALPTKE---PKPGSKCLASGWGSITPTRWQKPDDLQCVFIT 153

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L     C   Y   V      LC G++ G    C  DSGGPL C        L G TS+G
Sbjct: 154 LLPNENCAKVYLQKV--TDVMLCAGEMGGGKDTCRDDSGGPLIC-----DGILQGTTSYG 206

Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
              C K G P +YT L  +  WI+  +
Sbjct: 207 PVPCGKPGVPAIYTNLIKFNSWIKDTM 233

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  182 bits (464), Expect = 3e-55
 Identities = 62/239 (25%), Positives = 97/239 (40%), Gaps = 46/239 (19%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E  + + PWQV++             CG VL+HP WV+TAAHC+ +D         
Sbjct: 2   IGGWECEKHSKPWQVAVYHQGH------FQCGGVLVHPQWVLTAAHCMSDD--------- 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRP- 133
           +   LG  + +++E +     V    +  +F              +  HD+ LL+L++P 
Sbjct: 47  YQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPA 106

Query: 134 --TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISV 190
             T A    V+ + L     +       C  +GWG +    +  S  L+ + + L +   
Sbjct: 107 RITDA----VKILDLPT---QEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEK 159

Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           C   Y + +      LC    D     C+GDSGG L C          GITS+G   C 
Sbjct: 160 CARAYPEKM--TEFVLCATHRDDSGSICLGDSGGALIC-----DGVFQGITSWGYSECA 211

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  126 bits (318), Expect = 6e-34
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 19/150 (12%)

Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQI 340
            LL+L++P   T A    V+ + L     +       C  +GWG +    +  S  L+ +
Sbjct: 98  MLLRLAQPARITDA----VKILDLPT---QEPKLGSTCYTSGWGLISTFTNRGSGTLQCV 150

Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
            + L +   C   Y + +      LC    D     C+GDSGG L C          GIT
Sbjct: 151 ELRLQSNEKCARAYPEKM--TEFVLCATHRDDSGSICLGDSGGALIC-----DGVFQGIT 203

Query: 401 SFGSG-CAKSGYPDVYTKLSFYLPWIRKQI 429
           S+G   CA      V+TK+  +  WI++ I
Sbjct: 204 SWGYSECADFNDNFVFTKVMPHKKWIKETI 233

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  182 bits (464), Expect = 3e-55
 Identities = 70/239 (29%), Positives = 97/239 (40%), Gaps = 46/239 (19%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E  + + PWQV +             CG VL+HP WV+TAAHCI N          
Sbjct: 2   VGGWECEKHSQPWQVLVASRGR------AVCGGVLVHPQWVLTAAHCIRNK--------- 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRP- 133
              +LG       E +     V     H  +              +  HD+ LL+LS P 
Sbjct: 47  SVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPA 106

Query: 134 --TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISV 190
             T A    V+ + L     +       C A+GWG ++P+  L  K L+ + + + +  V
Sbjct: 107 ELTDA----VKVMDLPT---QEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDV 159

Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
           C   +   V      LC G+  G    C GDSGGPL C        L GITS+GS  C 
Sbjct: 160 CAQVHPQKV--TKFMLCAGRWTGGKSTCSGDSGGPLVC-----NGVLQGITSWGSEPCA 211

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  126 bits (319), Expect = 4e-34
 Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 19/150 (12%)

Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
            LL+LS P   T A    V+ + L     +       C A+GWG ++P+  L  K L+ +
Sbjct: 98  MLLRLSEPAELTDA----VKVMDLPT---QEPALGTTCYASGWGSIEPEEFLTPKKLQCV 150

Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
            + + +  VC   +   V      LC G+  G    C GDSGGPL C        L GIT
Sbjct: 151 DLHVISNDVCAQVHPQKV--TKFMLCAGRWTGGKSTCSGDSGGPLVC-----NGVLQGIT 203

Query: 401 SFGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
           S+GS  CA    P +YTK+  Y  WI+  I
Sbjct: 204 SWGSEPCALPERPSLYTKVVHYRKWIKDTI 233

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  181 bits (462), Expect = 5e-55
 Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 28/230 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I GK+S     PW V + V          +CG  ++  ++V+TAA C+         P  
Sbjct: 2   IGGKKSDITKEPWAVGVLVDEK------PFCGGSILTANFVITAAQCVDG-----TKPSD 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
            +   G   RT +      +  ++I     +H     ++ A+++   P    DK  + + 
Sbjct: 51  ISIHYGSSYRTTK---GTSVMAKKI-YIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIE 106

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHG- 203
           L      P  P    + +GWG    K    S  L +    + +   C ++Y         
Sbjct: 107 LPSLLYDPE-PDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYI 165

Query: 204 --GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
             G  C G     +    GD+G P           L G+ S+ S      
Sbjct: 166 YDGVFCAGGEYDETYIGYGDAGDPAVQ-----NGTLVGVASYISS-MPSE 209

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  135 bits (342), Expect = 2e-37
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 11/150 (7%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
           A+++   P    DK  + + L      P  P    + +GWG    K    S  L +    
Sbjct: 87  AVIETEMPIKLDDKTTKKIELPSLLYDPE-PDTSVLVSGWGSTNFKSLEYSGDLMEANFT 145

Query: 344 LHNISVCRDKYGDSVELHG---GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
           + +   C ++Y           G  C G     +    GD+G P           L G+ 
Sbjct: 146 VVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQ-----NGTLVGVA 200

Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           S+ S      +P V+ ++ +Y+  I+  I+
Sbjct: 201 SYISSMPS-EFPSVFLRVGYYVLDIKDIIS 229

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  180 bits (459), Expect = 2e-54
 Identities = 56/226 (24%), Positives = 80/226 (35%), Gaps = 29/226 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E         V+             +C   LI+  WV+TAAHC             
Sbjct: 2   IGGDECNINEHRSLVAFFNSTG------FFCSGTLINEEWVLTAAHC---------DNTN 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH---HDIALLKLSRPTSARDKGVRAV 144
           +   LG   +    + E     +   +     N      DI L+KL    S  +  +  +
Sbjct: 47  FQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEH-IVPL 105

Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHG 203
            L  +   P +    C   GWG + P             + L + +VC+  Y + +    
Sbjct: 106 SLPSS---PPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELL-TEY 161

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             LC G L+G    C GDSGGPL C          GI SFG+  CG
Sbjct: 162 RTLCAGILEGGKDTCGGDSGGPLIC-----NGQFQGIVSFGAHPCG 202

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  124 bits (314), Expect = 2e-33
 Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 12/148 (8%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            L+KL    S  +  +  + L  +   P +    C   GWG + P             + 
Sbjct: 88  MLIKLDSRVSNSEH-IVPLSLPSS---PPSVGSVCHIMGWGSITPIKVTYPDVPYCAYIN 143

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           L + +VC+  Y + +      LC G L+G    C GDSGGPL C          GI SFG
Sbjct: 144 LLDDAVCQAGYPELL-TEYRTLCAGILEGGKDTCGGDSGGPLIC-----NGQFQGIVSFG 197

Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           +  C +   P VYTK+  Y  WI+  I 
Sbjct: 198 AHPCGQGLKPGVYTKVFDYNHWIQSIIA 225

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  179 bits (456), Expect = 4e-54
 Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 30/226 (13%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           ING +      PWQ +L +   +      +CGAVL+HP W++TAAHC           ++
Sbjct: 2   INGSDCDMHTQPWQAALLLRPNQ-----LYCGAVLVHPQWLLTAAHC---------RKKV 47

Query: 88  WTAVLGDWDRTE-EEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
           +   LG +  +   E  +      +   H  +    + +D+ L+KL+R        VR +
Sbjct: 48  FRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKD-VRPI 106

Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHG 203
            ++       +   +C+ +GWG  K       K L+ + + + +   C D Y   +    
Sbjct: 107 NVSS---HCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQI--DD 161

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              C G   G   +C GDSGGP+ C        L G+ S+G   C 
Sbjct: 162 TMFCAGDKAG-RDSCQGDSGGPVVC-----NGSLQGLVSWGDYPCA 201

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  119 bits (301), Expect = 1e-31
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 14/147 (9%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            L+KL+R        VR + ++       +   +C+ +GWG  K       K L+ + + 
Sbjct: 89  MLIKLNRRIRPTKD-VRPINVSS---HCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNIS 144

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           + +   C D Y   +       C G   G   +C GDSGGP+ C        L G+ S+G
Sbjct: 145 VLSQKRCEDAYPRQI--DDTMFCAGDKAG-RDSCQGDSGGPVVC-----NGSLQGLVSWG 196

Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
              CA+   P VYT L  +  WI++ I
Sbjct: 197 DYPCARPNRPGVYTNLCKFTKWIQETI 223

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  178 bits (455), Expect = 6e-54
 Identities = 54/226 (23%), Positives = 77/226 (34%), Gaps = 32/226 (14%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E       +   +             CG  LI+  WV+TA HC   +         
Sbjct: 2   IGGDECNINEHRFLALVYANG-------SLCGGTLINQEWVLTARHCDRGN--------- 45

Query: 88  WTAVLGDWDRTEEEKSEV-RIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
               LG  +     K  + R P E+           +  DI L++L+RP       +  +
Sbjct: 46  MRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAH-IAPL 104

Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHG 203
            L      P +    C   GWG +      +        + + + +VC+  Y     L  
Sbjct: 105 SLPS---NPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG---LAA 158

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             LC G L+G    C GDSGGPL C          GI S G   C 
Sbjct: 159 TTLCAGILEGGKDTCKGDSGGPLIC-----NGQFQGILSVGGNPCA 199

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  121 bits (306), Expect = 3e-32
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
            L++L+RP       +  + L      P +    C   GWG +      +        + 
Sbjct: 87  MLIRLNRPVRNSAH-IAPLSLPS---NPPSVGSVCRIMGWGTITSPNATLPDVPHCANIN 142

Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
           + + +VC+  Y     L    LC G L+G    C GDSGGPL C          GI S G
Sbjct: 143 ILDYAVCQAAYKG---LAATTLCAGILEGGKDTCKGDSGGPLIC-----NGQFQGILSVG 194

Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
              CA+   P +YTK+  Y  WI+  I+
Sbjct: 195 GNPCAQPRKPGIYTKVFDYTDWIQSIIS 222

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  177 bits (452), Expect = 1e-52
 Identities = 46/234 (19%), Positives = 78/234 (33%), Gaps = 32/234 (13%)

Query: 21  SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
                     +       PWQV L     +      +CG V+I  ++V+T A C      
Sbjct: 88  CACGVLTSEKRAPDLQDLPWQVKLTNSEGK-----DFCGGVIIRENFVLTTAKCSLLH-- 140

Query: 81  SLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARD 138
                     V   ++RT ++   + I +  + VH  +      +D++LL+L  P     
Sbjct: 141 ------RNITVKTYFNRTSQD--PLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPG 192

Query: 139 KGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYG 196
                VC  + D  +  + P+ + + +GW R     DL + L    V L     C     
Sbjct: 193 A-GLPVCTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEECGQVLN 249

Query: 197 DSVELHGGHLC-GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            +V       C    +     A     G  +      G W+L G+        G
Sbjct: 250 VTV--TTRTYCERSSVA----AMHWMDGSVVTRE-HRGSWFLTGVLGSQP--VG 294

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  125 bits (317), Expect = 4e-33
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 14/149 (9%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           +LL+L  P          VC  + D  +  + P+ + + +GW R     DL + L    V
Sbjct: 180 SLLELEWPIQCPGA-GLPVCTPEKDFAEHLLIPRTRGLLSGWARNG--TDLGNSLTTRPV 236

Query: 343 PLHNISVCRDKYGDSVELHGGHLC-GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            L     C      +V       C    +     A     G  +      G W+L G+  
Sbjct: 237 TLVEGEECGQVLNVTV--TTRTYCERSSVA----AMHWMDGSVVTRE-HRGSWFLTGVLG 289

Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
                    +  + TK+S Y  W ++ +N
Sbjct: 290 SQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 317

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  185 bits (470), Expect = 9e-52
 Identities = 75/245 (30%), Positives = 106/245 (43%), Gaps = 18/245 (7%)

Query: 5   CDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIH 64
                        +       R++ G  +   +WPWQVSL+          H+CG  LI 
Sbjct: 540 QCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF-----GMHFCGGTLIS 594

Query: 65  PSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHD 124
           P WV+TAAHC+       P P  +  +LG       E     I V R+ +         D
Sbjct: 595 PEWVLTAAHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEP----TRKD 646

Query: 125 IALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 184
           IALLKLS P    DK V   CL   +   V  + +C  TGWG  +        L++ ++P
Sbjct: 647 IALLKLSSPAVITDK-VIPACLPSPNY-VVADRTECFITGWGETQG-TFGAGLLKEAQLP 703

Query: 185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
           +    VC      +  +    LC G L G + +C GDSGGPL C  +  ++ L G+TS+G
Sbjct: 704 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWG 762

Query: 245 SGYCG 249
            G C 
Sbjct: 763 LG-CA 766

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  131 bits (331), Expect = 3e-33
 Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
           ALLKLS P    DK V   CL   +   V  + +C  TGWG  +        L++ ++P+
Sbjct: 648 ALLKLSSPAVITDK-VIPACLPSPNY-VVADRTECFITGWGETQG-TFGAGLLKEAQLPV 704

Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
               VC      +  +    LC G L G + +C GDSGGPL C  +  ++ L G+TS+G 
Sbjct: 705 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWGL 763

Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
           GCA+   P VY ++S ++ WI   +
Sbjct: 764 GCARPNKPGVYVRVSRFVTWIEGVM 788

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  174 bits (444), Expect = 9e-52
 Identities = 45/243 (18%), Positives = 76/243 (31%), Gaps = 33/243 (13%)

Query: 12  RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           + C    + +         +       PWQV L     +      +CG V+I  ++V+T 
Sbjct: 39  KQCVPHDQCAC-GVLTSEKRAPDLQDLPWQVKLTNSEGK-----DFCGGVIIRENFVLTT 92

Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLK 129
           A C              T            +  + I +  + VH  +      +D++LL+
Sbjct: 93  AKCSLL-------HRNITVKTYFNRT---SQDPLMIKITHVHVHMRYDADAGENDLSLLE 142

Query: 130 LSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN 187
           L  P          VC    D  +  + P+ + + +GW R     DL + L    V L  
Sbjct: 143 LEWPIQCPGA-GLPVCTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVE 199

Query: 188 ISVCRDKYGDSVELHGGHLC-GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
              C      +V       C    +     A     G  +      G W+L G+      
Sbjct: 200 GEECGQVLNVTV--TTRTYCERSSVA----AMHWMDGSVVTRE-HRGSWFLTGVLGSQP- 251

Query: 247 YCG 249
             G
Sbjct: 252 -VG 253

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  123 bits (311), Expect = 1e-32
 Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 14/149 (9%)

Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
           +LL+L  P          VC    D  +  + P+ + + +GW R     DL + L    V
Sbjct: 139 SLLELEWPIQCPGA-GLPVCTPEKDFAEHLLIPRTRGLLSGWARNG--TDLGNSLTTRPV 195

Query: 343 PLHNISVCRDKYGDSVELHGGHLC-GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
            L     C      +V       C    +     A     G  +      G W+L G+  
Sbjct: 196 TLVEGEECGQVLNVTV--TTRTYCERSSVA----AMHWMDGSVVTRE-HRGSWFLTGVLG 248

Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
                    +  + TK+S Y  W ++ +N
Sbjct: 249 SQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 276

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  178 bits (454), Expect = 4e-51
 Identities = 52/272 (19%), Positives = 84/272 (30%), Gaps = 54/272 (19%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
              + K +     PWQ  + V+ P  G     C   ++   +V+TAAHC   D       
Sbjct: 214 VWEHRKGTDYHKQPWQAKISVIRPSKG--HESCMGAVVSEYFVLTAAHCFTVD----DKE 267

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-----------NYHHDIALLKLSRPT 134
                 +G   R         + +E +  H  ++            Y +D+AL+KL    
Sbjct: 268 HSIKVSVGGEKRD--------LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKL 319

Query: 135 SARDKGVRAVCLTDADKRPVNPKQQ----CVATGWGRVKPKGDLV-------SKLRQIRV 183
                 +R +CL   +      +      C       +  +            KL +  V
Sbjct: 320 KYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEV 378

Query: 184 PLHN---ISVCRDKYGDSVELHGGH----------LCGGQLDGFSG--ACIGDSGGPLQC 228
            + N      C      +                 LC G +  ++    C GDSGGPL  
Sbjct: 379 YIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV 438

Query: 229 SLKDGRWYLAGITSFGSGY-CGVGIRYSHRQP 259
             K  R+   G+ S+G    C    R      
Sbjct: 439 H-KRSRFIQVGVISWGVVDVCKNQKRQKQVPA 469

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  115 bits (288), Expect = 4e-28
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 38/182 (20%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQ----CVATGWGRVKPKGDLV------ 334
           AL+KL          +R +CL   +      +      C       +  +          
Sbjct: 311 ALIKLKNKLKYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEE 369

Query: 335 -SKLRQIRVPLHN---ISVCRDKYGDSVELHGGH----------LCGGQLDGFSG--ACI 378
             KL +  V + N      C      +                 LC G +  ++    C 
Sbjct: 370 EKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 429

Query: 379 GDSGGPLQCSLKDGRWYLAGITSFG--SGCAKSG--------YPDVYTKLSFYLPWIRKQ 428
           GDSGGPL    K  R+   G+ S+G    C              D +  L   LPW++++
Sbjct: 430 GDSGGPLIVH-KRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 488

Query: 429 IN 430
           + 
Sbjct: 489 LQ 490

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score =  177 bits (451), Expect = 1e-50
 Identities = 53/291 (18%), Positives = 91/291 (31%), Gaps = 60/291 (20%)

Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CGVG          ++   S +   PW V+++            C   LI   WV+TAAH
Sbjct: 220 CGVGN---------MSANASDQERTPWHVTIKPKSQ------ETCRGALISDQWVLTAAH 264

Query: 74  CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-----------NYH 122
           C  +         LW   +GD       +      +E+  +   F             Y 
Sbjct: 265 CFRDG----NDHSLWRVNVGDPKS----QWGKEFLIEKAVISPGFDVFAKKNQGILEFYG 316

Query: 123 HDIALLKLSRPTSARDKGVRAVCLTDADKRPVN----PKQQCVATGWGRVKPKGDLVS-- 176
            DIALLKL++         R +CL    +  +         C       +  +       
Sbjct: 317 DDIALLKLAQKVKMSTH-ARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFV 375

Query: 177 KLRQIRVPLHNI-----SVCRDKYGDSVELHGGH-----------LCGGQLDGFSGACIG 220
            L   ++ ++       + C +       +               LC G  +     C G
Sbjct: 376 ALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKG 434

Query: 221 DSGGPLQCSLKDGRWYLAGITSFG-SGYCGVGIRYSHRQPRLINGKESIRG 270
           +SGG +    +  R++  G+ S+G    C      + R+    +     R 
Sbjct: 435 ESGGAVFLE-RRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRD 484

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score =  110 bits (276), Expect = 2e-26
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 42/184 (22%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVN----PKQQCVATGWGRVKPKGDLVS--KLR 338
           ALLKL++         R +CL    +  +         C       +  +        L 
Sbjct: 320 ALLKLAQKVKMSTH-ARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALN 378

Query: 339 QIRVPLHNI-----SVCRDKYGDSVELHGGH-----------LCGGQLDGFSGACIGDSG 382
             ++ ++       + C +       +               LC G  +     C G+SG
Sbjct: 379 GSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKGESG 437

Query: 383 GPLQCSLKDGRWYLAGITSFG-----SGCAKSG------------YPDVYTKLSFYLPWI 425
           G +    +  R++  G+ S+G      G A                 D +  L    PW+
Sbjct: 438 GAVFLE-RRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWL 496

Query: 426 RKQI 429
           R+ +
Sbjct: 497 RQHL 500

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score =  168 bits (427), Expect = 5e-46
 Identities = 53/272 (19%), Positives = 84/272 (30%), Gaps = 54/272 (19%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
              + K +     PWQ  + V+ P  G     C   ++   +V+TAAHC   D       
Sbjct: 456 VWEHRKGTDYHKQPWQAKISVIRPSKG--HESCMGAVVSEYFVLTAAHCFTVD----DKE 509

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-----------NYHHDIALLKLSRPT 134
                 +G   R         + +E +  H  ++            Y +D+AL+KL    
Sbjct: 510 HSIKVSVGGEKRD--------LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKL 561

Query: 135 SARDKGVRAVCLTDADKRPVN----PKQQCVATGWGRVKPKGDLV-------SKLRQIRV 183
                 +R +CL   +         P   C       +  +            KL +  V
Sbjct: 562 KYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEV 620

Query: 184 PLHNI---SVCRDKYGDSVELHGGH----------LCGGQLDGFSG--ACIGDSGGPLQC 228
            + N      C      +                 LC G +  ++    C GDSGGPL  
Sbjct: 621 YIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV 680

Query: 229 SLKDGRWYLAGITSFGSGY-CGVGIRYSHRQP 259
             K  R+   G+ S+G    C    R      
Sbjct: 681 H-KRSRFIQVGVISWGVVDVCKNQKRQKQVPA 711

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score =  111 bits (278), Expect = 2e-26
 Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 38/182 (20%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVN----PKQQCVATGWGRVKPKGDLV------ 334
           AL+KL          +R +CL   +         P   C       +  +          
Sbjct: 553 ALIKLKNKLKYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEE 611

Query: 335 -SKLRQIRVPLHNI---SVCRDKYGDSVELHGGH----------LCGGQLDGFSG--ACI 378
             KL +  V + N      C      +                 LC G +  ++    C 
Sbjct: 612 EKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 671

Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSG--------YPDVYTKLSFYLPWIRKQ 428
           GDSGGPL    K  R+   G+ S+G    C              D +  L   LPW++++
Sbjct: 672 GDSGGPLIVH-KRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 730

Query: 429 IN 430
           + 
Sbjct: 731 LQ 732

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score =  139 bits (353), Expect = 2e-40
 Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 17/144 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           +NG+E++ G+WPWQVSLQ          H+CG  LI+ +WVVTAAHC             
Sbjct: 2   VNGEEAVPGSWPWQVSLQDKTGF-----HFCGGSLINENWVVTAAHCGVTTS-------- 48

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
              V G++D+    +   ++ + ++  + ++     ++DI LLKLS   S     V AVC
Sbjct: 49  DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQT-VSAVC 107

Query: 146 LTDADKRPVNPKQQCVATGWGRVK 169
           L  A          CV TGWG  +
Sbjct: 108 LPSASD-DFAAGTTCVTTGWGLTR 130

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK 328
            LLKLS   S     V AVCL  A          CV TGWG  +
Sbjct: 89  TLLKLSTAASFSQT-VSAVCLPSASD-DFAAGTTCVTTGWGLTR 130

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score =  123 bits (310), Expect = 7e-34
 Identities = 52/150 (34%), Positives = 72/150 (48%), Gaps = 15/150 (10%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS---KLRQIR 341
            LL+L  P    D  V+ + L     +       C A+GWG ++P  D      +++ ++
Sbjct: 11  MLLRLQSPAKITDA-VKVLELPT---QEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQ 66

Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
           + L   + C D + D V      LC G L G    C+GDSGGPL C   +G W   GITS
Sbjct: 67  LTLLQNTFCADAHPDKV--TESMLCAGYLPGGKDTCMGDSGGPLIC---NGMWQ--GITS 119

Query: 402 FGSG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
           +G   C  +  P +YTKL FYL WI   I 
Sbjct: 120 WGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score =  105 bits (265), Expect = 2e-27
 Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 14/134 (10%)

Query: 119 HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-- 176
            +Y HD+ LL+L  P    D  V+ + L     +       C A+GWG ++P  D     
Sbjct: 4   KDYSHDLMLLRLQSPAKITDA-VKVLELPT---QEPELGSTCEASGWGSIEPGPDDFEFP 59

Query: 177 -KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW 235
            +++ +++ L   + C D + D V      LC G L G    C+GDSGGPL C   +G W
Sbjct: 60  DEIQCVQLTLLQNTFCADAHPDKV--TESMLCAGYLPGGKDTCMGDSGGPLIC---NGMW 114

Query: 236 YLAGITSFGSGYCG 249
              GITS+G   CG
Sbjct: 115 Q--GITSWGHTPCG 126

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score =  105 bits (265), Expect = 5e-28
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)

Query: 331 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
            +   +L+Q  +PL + + C+  +G  +      +C G       +C+GDSGGPL C  K
Sbjct: 1   ANTPDRLQQASLPLLSNTNCKKYWGTKI--KDAMICAGA--SGVSSCMGDSGGPLVCK-K 55

Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           +G W L GI S+GS    +  P VY +++  + W+++ +
Sbjct: 56  NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score = 71.0 bits (175), Expect = 1e-15
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 172 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 231
            +   +L+Q  +PL + + C+  +G  +      +C G       +C+GDSGGPL C  K
Sbjct: 1   ANTPDRLQQASLPLLSNTNCKKYWGTKI--KDAMICAGA--SGVSSCMGDSGGPLVCK-K 55

Query: 232 DGRWYLAGITSFGSGYCG 249
           +G W L GI S+GS    
Sbjct: 56  NGAWTLVGIVSWGSS-TC 72

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Length = 80

 Score = 93.7 bits (234), Expect = 6e-24
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 15/93 (16%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G+E  + + PWQV++             CG VL++P WV+TAAHC +++         
Sbjct: 2   IGGRECEKNSHPWQVAIYHY------SSFQCGGVLVNPKWVLTAAHCKNDN--------- 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN 120
           +   LG  +  E E +     V     H  F+ 
Sbjct: 47  YEVWLGRHNLFENENTAQFFGVTADFPHPGFNL 79

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 77.7 bits (191), Expect = 1e-16
 Identities = 28/233 (12%), Positives = 60/233 (25%), Gaps = 42/233 (18%)

Query: 36  GAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDW 95
              P+     +           C   LI P+ ++T  HC++N        +  +   G  
Sbjct: 15  RVAPYNSIAYITFGG-----SSCTGTLIAPNKILTNGHCVYNTASRSYSAK-GSVYPG-- 66

Query: 96  DRTEEEKSEVRIPVERIRVHEEFHN---YHHDIALLKLSRPTSARDKGVRAVCLTDADKR 152
              +         +    V   + N     +D A++K                +T+    
Sbjct: 67  -MNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGT 125

Query: 153 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 212
            +        +G+   K +        ++   +                           
Sbjct: 126 TIK------ISGYPGDKMRSTGKVSQWEMSGSVTRED------------------TNLAY 161

Query: 213 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFG--SGYCGVGIRYSHRQPRLIN 263
                  G+SG  +     D    + G+ + G  +G    G + +      IN
Sbjct: 162 YTIDTFSGNSGSAML----DQNQQIVGVHNAGYSNGTINGGPKATAAFVEFIN 210

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Length = 218

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 32/206 (15%)

Query: 56  HWCGAVLI---HPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERI 112
             C A ++   + S V TA HC+H+                 +D  E E        E +
Sbjct: 21  FVCSANIVASANQSTVATAGHCLHDGNGGQFARNF--VFAPAYDYGESEHG--VWAAEEL 76

Query: 113 RVHEEFHN---YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK 169
               E+ N   + HD A   L        +      +  A     N  +    + +G   
Sbjct: 77  VTSAEWANRGDFEHDYAFAVLETKGGTTVQQQ----VGTASPIAFNQPRGQYYSAYG--- 129

Query: 170 PKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCS 229
                         P       ++ +          +             G SGGP    
Sbjct: 130 -------------YPAAAPFNGQELHSCHGTATNDPMGSSTQGIPCNMTGGSSGGPWFLG 176

Query: 230 LKDGRWYLAGITSFGSGYCGVGIRYS 255
                       S+G  +    + + 
Sbjct: 177 -NGTGGAQNSTNSYGYTFLP-NVMFG 200

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 22/146 (15%)

Query: 37  AWPWQ--VSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGD 94
              +     +QV  P           V++    ++T  H +                 GD
Sbjct: 16  NGHYAPVTYIQVEAPTGT---FIASGVVVGKDTLLTNKHVVDATH-------------GD 59

Query: 95  WDRTEE---EKSEVRIPVERIRVHEEFH-NYHHDIALLKLSRPTSARDKGVRAVCLTDAD 150
               +      ++   P       +    +   D+A++K S     +  G      T ++
Sbjct: 60  PHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSN 119

Query: 151 KRPVNPKQQCVATGWGRVKPKGDLVS 176
                  Q    TG+   KP   +  
Sbjct: 120 NAETQTNQNITVTGYPGDKPVATMWE 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 9e-04
 Identities = 71/506 (14%), Positives = 129/506 (25%), Gaps = 175/506 (34%)

Query: 19  RYSHRQPRLINGKESIRGAWPWQVS-----------LQVLHPRLGLMPHW---CG-AVL- 62
            Y  ++ RL N  +       + VS           L  L P   ++       G   + 
Sbjct: 111 MYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 63  ----------------IHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR 106
                           I   W+    +C   +     + +L   +  +W    +  S ++
Sbjct: 168 LDVCLSYKVQCKMDFKIF--WL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 107 IPVE--RIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP-KQQC--- 160
           + +   +  +     +  ++  LL L       +     V     + +  N     C   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVL------LN-----VQ----NAKAWNAFNLSCKIL 269

Query: 161 VATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIG 220
           + T   R K   D +S      + L + S+      +   L         L  +      
Sbjct: 270 LTT---RFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL---------LLKYLDCRPQ 316

Query: 221 D------SGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWP- 273
           D      +  P + S+                                   ESIR     
Sbjct: 317 DLPREVLTTNPRRLSI------------IA---------------------ESIRD-GLA 342

Query: 274 -WQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP-----------VNPKQQCVA 321
            W N    +      KL+      +  +    L  A+ R             +     ++
Sbjct: 343 TWDN----WKHVNCDKLTT---IIESSLN--VLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 322 TGWGRVKPK--GDLVSKLRQ------------IRVP---------------LHNISVCRD 352
             W  V       +V+KL +            I +P               LH   V  D
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--D 451

Query: 353 KYGDSVELHGGHLCGGQLDGFSGACIG---------DSGGPLQCSLKDGRWYLAGITSFG 403
            Y          L    LD +  + IG         +     +    D R+    I    
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 404 SGC-AKSGYPDVYTKLSFYLPWIRKQ 428
           +   A     +   +L FY P+I   
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDN 537

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	436
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	100.0
3hrz_D	741	Complement factor B; serine protease, glycosilated	100.0
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	100.0
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.98
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	99.98
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.98
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	99.98
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	99.98
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	99.97
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	99.97
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	99.97
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	99.97
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	99.97
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	99.97
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	99.97
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	99.97
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	99.97
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	99.97
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	99.97
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	99.97
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	99.97
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	99.97
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	99.97
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	99.97
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	99.97
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	99.97
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	99.97
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	99.97
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	99.97
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	99.97
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	99.97
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.97
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	99.97
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	99.97
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	99.96
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	99.96
1md8_A	329	C1R complement serine protease; innate immunity, a	99.96
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	99.96
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	99.96
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	99.96
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	99.96
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	99.96
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	99.96
1elv_A	333	Complement C1S component; trypsin-like serin prote	99.96
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	99.96
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	99.96
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	99.96
2aiq_A	231	Protein C activator; snake venom serine proteinase	99.96
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	99.96
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	99.96
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	99.96
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	99.96
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	99.96
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	99.96
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	99.96
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	99.96
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	99.96
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	99.96
1gpz_A	399	Complement C1R component; hydrolase, activation, i	99.95
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	99.95
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	99.95
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	99.95
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	99.95
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.95
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	99.95
1a7s_A	225	Heparin binding protein; serine protease homolog,	99.94
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.94
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	99.94
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.94
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.93
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.93
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.93
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.91
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.91
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.91
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.9
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	99.9
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.89
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.89
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.88
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.86
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	99.85
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.82
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.74
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	99.72
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.72
3k6y_A	237	Serine protease, possible membrane-associated seri	99.71
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	99.71
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	99.7
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.67
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	99.67
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	99.66
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	99.65
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	99.65
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	99.64
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	99.64
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	99.64
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	99.64
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	99.63
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	99.63
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	99.63
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	99.62
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.62
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	99.62
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.62
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	99.62
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	99.61
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.59
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	99.59
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.59
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.56
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.55
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.53
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.52
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.52
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	99.52
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	99.51
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	99.51
1aut_C	250	Activated protein C; serine proteinase, plasma cal	99.5
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.49
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.48
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.46
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.45
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.45
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	99.44
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	99.44
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	99.43
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.39
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.36
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	99.31
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	99.26
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.25
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.22
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.22
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.1
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	99.09
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.0
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	98.97
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.86
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	98.85
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	98.78
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	98.74
1hpg_A	187	Glutamic acid specific protease; serine protease,	98.7
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	98.68
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.64
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.56
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	98.53
3k6y_A	237	Serine protease, possible membrane-associated seri	98.49
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	98.46
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	98.45
2w5e_A	163	Putative serine protease; coiled coil, transmembra	98.29
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	98.26
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.24
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	98.22
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.17
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.08
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.08
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	97.98
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	97.94
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.8
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	97.79
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	97.78
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	97.21
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	96.14
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	96.13
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	96.02
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	96.01
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	95.35
3syj_A	1011	Adhesion and penetration protein autotransporter;	94.74
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	92.81
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	91.8
3syj_A	1011	Adhesion and penetration protein autotransporter;	87.85
2fyq_A	194	Chymotrypsin-like cysteine proteinase; protease, n	87.71
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	86.21
3mmg_A	241	Nuclear inclusion protein A; 3C-type protease, TEV	85.61
4ash_A	185	NS6 protease; hydrolase, trypsin-like, calicivirus	84.24
3h09_A	989	IGA1 protease, immunoglobulin A1 protease; serine	83.74
3sze_A	968	Serine protease ESPP; parallel beta-helix, hydrola	80.29

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=3.6e-51  Score=388.84  Aligned_cols=260  Identities=24%  Similarity=0.405  Sum_probs=197.8

Q ss_pred             cCCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEE
Q psy16044         11 ARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTA   90 (436)
Q Consensus        11 ~~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v   90 (436)
                      .+.||++..+....+||+||++|.+++|||+|+|+...      .++|+||||+++||||||||+.....     ....+
T Consensus        87 ~p~CG~p~~~~~~~~RIvGG~~a~~g~~Pw~v~l~~~~------~~~CGGsLIs~~~VLTAAHCv~~~~~-----~~~~~  155 (347)
T 4f4o_C           87 EAVCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHH------NLTSGATLINEQWLLTTAKNLRLGHK-----NDTKA  155 (347)
T ss_dssp             EECCSCCSSCC-----CCSCCBCCSCCCTTCEEEECTT------CCEEECCBCSSSEEEECHHHHTTTSC-----TTCCH
T ss_pred             cCCCCCCCCCCCCCCeEECCEECCCCCCCcEEEEEeCC------CEEEEEEEEcCCEEEeCcccccCCCC-----CcceE
Confidence            45799877766778899999999999999999998643      68999999999999999999965321     11222


Q ss_pred             EeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCC
Q psy16044         91 VLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP  170 (436)
Q Consensus        91 ~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~  170 (436)
                      ..+...........+.+.|+++++||+|+  .||||||||++|+. ++.+++|||||..+  ....+..++++|||.+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~V~~i~~HP~y~--~nDIALlkL~~~v~-~~~~v~PicLp~~~--~~~~g~~~~v~GWG~~~~  230 (347)
T 4f4o_C          156 KDIAPTLRLYVGKKQEVEIEKVIFHPDNS--TVDIGLIKLKQKVP-VNERVMPICLPSKD--YVNVGLVGYVSGWGRNAN  230 (347)
T ss_dssp             HHHGGGCEEEETTTEEECEEEEEECSCTT--TCCCEEEEESSCCC-CSSSCCCCBCCSSC--CCCTTCEEEEEECSBCTT
T ss_pred             EeeeeeeeecCCCeEEEEEEEEEECcCCC--CCCEEEEEECCCcc-CCCceeeeecCccc--cCCCCcEEEEeccccCCC
Confidence            22322222223345788999999999986  58999999999999 78899999999853  345788999999998763


Q ss_pred             CCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC
Q psy16044        171 KGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV  250 (436)
Q Consensus       171 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~  250 (436)
                       +..+..|+++.+++++.+.|...|.......                            .                   
T Consensus       231 -~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~----------------------------~-------------------  262 (347)
T 4f4o_C          231 -LNFTEHLKYVMLPVADQEKCVQYYEGSTVPE----------------------------K-------------------  262 (347)
T ss_dssp             -SSBCSSCEEEEEEEECHHHHHHHHSSCSSGG----------------------------G-------------------
T ss_pred             -CCCCccceEEEEEEeCHHHHHHHhccccccc----------------------------c-------------------
Confidence             4567789999999999999998875321100                            0                   


Q ss_pred             CcccccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC
Q psy16044        251 GIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK  330 (436)
Q Consensus       251 ~~~y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~  330 (436)
                                                                                                      
T Consensus       263 --------------------------------------------------------------------------------  262 (347)
T 4f4o_C          263 --------------------------------------------------------------------------------  262 (347)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCC
Q psy16044        331 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKS  409 (436)
Q Consensus       331 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~  409 (436)
                                       ..+.........++++||||+...+++++|+|||||||++.. .+++|+|+||+|||.+|+. 
T Consensus       263 -----------------~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~~lvGIvS~G~~C~~-  324 (347)
T 4f4o_C          263 -----------------KTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSCRT-  324 (347)
T ss_dssp             -----------------CCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEEEEEEEEEECCCTTT-
T ss_pred             -----------------ccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEEEeCCCCCC-
Confidence                             000000000114688999998877778999999999999976 4789999999999999976 


Q ss_pred             CCCeEEEeCcccHHHHHHHHhhh
Q psy16044        410 GYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       410 ~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      ..|+|||||++|++||+++|+++
T Consensus       325 ~~pgVYTrVs~y~~WI~~~i~~N  347 (347)
T 4f4o_C          325 AEYGVYVRVTSILDWIQTTIADN  347 (347)
T ss_dssp             SSCEEEEEHHHHHHHHHHHHTC-
T ss_pred             CCCeEEEEHHHHHHHHHHHHHcC
Confidence            46999999999999999999764

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=9.7e-50  Score=370.39  Aligned_cols=257  Identities=29%  Similarity=0.551  Sum_probs=197.0

Q ss_pred             ceecCCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcc
Q psy16044          8 VTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL   87 (436)
Q Consensus         8 ~~~~~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~   87 (436)
                      ..++.+||++.  .....||+||++|..++|||+|+|+...... ...|+|+||||+++||||||||+.+.    .....
T Consensus         7 ~~~~~~CG~~~--~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~-~~~~~CgGsLIs~~~VLTAAHCv~~~----~~~~~   79 (276)
T 2vnt_A            7 EELKFQCGQKT--LRPRFKIIGGEFTTIENQPWFAAIYRRHRGG-SVTYVCGGSLMSPCWVISATHCFIDY----PKKED   79 (276)
T ss_dssp             ---CCCTTCCC--C-----CCSSEECCGGGSTTEEEEEEECSSS-CEEEEEEEEEEETTEEEECGGGTTTC----CCGGG
T ss_pred             ccCCCCCCCcC--CCCCCcEECCEECCCCCCCcEEEEEEecCCC-cceeEEEEEEeeCCEEEECcccccCC----CCCcc
Confidence            34567899653  4457899999999999999999998765432 23689999999999999999999763    23466


Q ss_pred             eEEEeccccCCccCCceEEEeeeEEEeCCCCC----CCCCceeEEEeCCCCC---CCCCceeeeeecCCCCCCCCCCCcE
Q psy16044         88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTS---ARDKGVRAVCLTDADKRPVNPKQQC  160 (436)
Q Consensus        88 ~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~----~~~~DiAll~L~~~~~---~~~~~v~pi~l~~~~~~~~~~~~~~  160 (436)
                      +.|++|..++.......+.+.|+++++||+|+    ...+|||||+|+.++.   .++..++|||||..           
T Consensus        80 ~~v~~g~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~-----------  148 (276)
T 2vnt_A           80 YIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSM-----------  148 (276)
T ss_dssp             EEEEESCCBSSSCCTTCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCS-----------
T ss_pred             EEEEeeeeeccCCCCceEEEEEEEEEEccccccccccccchhhhhhhhccccccccCcccccccccccc-----------
Confidence            88999998888777778899999999999997    2468999999998764   14455666666553           


Q ss_pred             EEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEE
Q psy16044        161 VATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI  240 (436)
Q Consensus       161 ~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI  240 (436)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (276)
T 2vnt_A          149 --------------------------------------------------------------------------------  148 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeEcCCCCCCCcccccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEE
Q psy16044        241 TSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCV  320 (436)
Q Consensus       241 ~S~g~~~C~~~~~y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~  320 (436)
                                                                                          .. ....++.|.
T Consensus       149 --------------------------------------------------------------------~~-~~~~~~~~~  159 (276)
T 2vnt_A          149 --------------------------------------------------------------------YN-DPQFGTSCE  159 (276)
T ss_dssp             --------------------------------------------------------------------SC-CCCTTCEEE
T ss_pred             --------------------------------------------------------------------cc-cccccceEE
Confidence                                                                                21 122344455


Q ss_pred             EEecCCCCCCC-CccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEE
Q psy16044        321 ATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI  399 (436)
Q Consensus       321 ~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi  399 (436)
                      ++|||.+.... ..+..++.+.+++++.++|++.+.......+.++|+....+..+.|.|||||||++.. +++|+|+||
T Consensus       160 ~~g~G~~~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~-~~~~~lvGI  238 (276)
T 2vnt_A          160 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL-QGRMTLTGI  238 (276)
T ss_dssp             EEESCCSSTTCSCCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTTSCCCCCTTCTTCEEEEEE-TTEEEEEEE
T ss_pred             EEEeeccccCCCCcchhheeeeeeEecHHHhhhhhccCcccCccceeeccCCCCCCCCCCCCCCeEEEee-CCeEEEEEE
Confidence            55555443322 2345678889999999999988765555677888887777777999999999999985 789999999


Q ss_pred             EEecCCCCCCCCCeEEEeCcccHHHHHHHHhhh
Q psy16044        400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       400 ~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      +|||.+|+..+.|+|||||++|++||+++|+++
T Consensus       239 vS~G~~C~~~~~P~vyt~V~~y~~WI~~~~~~~  271 (276)
T 2vnt_A          239 VSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE  271 (276)
T ss_dssp             EEECSSSSBTTBCEEEEEGGGGHHHHHHHHSCC
T ss_pred             EEECCCCCCCCCCEEEEEHHHHHHHHHHHhhhh
Confidence            999999998888999999999999999999754

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=2.9e-49  Score=360.07  Aligned_cols=239  Identities=34%  Similarity=0.724  Sum_probs=192.1

Q ss_pred             CCCCccCCCC--CCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEE
Q psy16044         14 CGVGIRYSHR--QPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAV   91 (436)
Q Consensus        14 CG~~~~~~~~--~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~   91 (436)
                      ||.+...+..  ..||+||++|.+++|||+|+|+...   +  .++|+||||+++||||||||+..        ..+.|+
T Consensus         1 cg~~~~~p~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~---~--~~~CgGtLI~~~~VLTAAHC~~~--------~~~~v~   67 (245)
T 1t8o_A            1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKT---G--FHFCGGSLINENWVVTAAHCGVT--------TSDVVV   67 (245)
T ss_dssp             CCCCSSCCCCC----CBTCEECCTTSSTTEEEEECTT---C--CEEEEEEEEETTEEEECGGGCCC--------TTSEEE
T ss_pred             CCCCcccccccCCCceECCEECCCCCCCceEEEEcCC---C--CeEEEEEEeeCCEEEEcHHhCcC--------CCcEEE
Confidence            7755544332  3599999999999999999998642   1  68999999999999999999864        345789


Q ss_pred             eccccCCccCCceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccC
Q psy16044         92 LGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK  169 (436)
Q Consensus        92 ~g~~~~~~~~~~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~  169 (436)
                      +|.++........+.+.|.+++.||+|+  ...||||||||++|+. ++.+++|||||.... ....+..++++|||.+.
T Consensus        68 ~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG~~~  145 (245)
T 1t8o_A           68 AGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAAS-FSQTVSAVCLPSASD-DFAAGTTCVTTGWGLTR  145 (245)
T ss_dssp             ESCSBTTCSSSCCEEEEEEEEEECTTCCTTTCCSCCEEEEESSCCC-CBTTBCCCBCCCTTC-CCCTTCEEEEEESCCSC
T ss_pred             EeeeecCCCCCCcEEEEEEEEEeCCCCCCCCCCCCEEEEEECCCCc-CCCceeeeECCCCcc-CCCCCCEEEEEEeCCCC
Confidence            9988876655566889999999999998  4689999999999999 678899999987432 23345566666666432


Q ss_pred             CCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC
Q psy16044        170 PKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG  249 (436)
Q Consensus       170 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~  249 (436)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (245)
T 1t8o_A          146 --------------------------------------------------------------------------------  145 (245)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCC
Q psy16044        250 VGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP  329 (436)
Q Consensus       250 ~~~~y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~  329 (436)
                                                                                                     .
T Consensus       146 -------------------------------------------------------------------------------~  146 (245)
T 1t8o_A          146 -------------------------------------------------------------------------------Y  146 (245)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           1


Q ss_pred             CC-CccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCC
Q psy16044        330 KG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAK  408 (436)
Q Consensus       330 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~  408 (436)
                      .. ..+..|+++.+++++.++|++.+..  .+++.|||++  ..+.+.|.|||||||++.. +++|+|+||+|||..|+.
T Consensus       147 ~~~~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~~-~~~~~l~GI~S~g~~c~~  221 (245)
T 1t8o_A          147 TNANTPDRLQQASLPLLSNTNCKKYWGT--KIKDAMICAG--ASGVSSCMGDSGGPLVCKK-NGAWTLVGIVSWGSSTCS  221 (245)
T ss_dssp             --CCCCSBCEEEEEEEECHHHHHHHHGG--GCCTTEEEEE--CSSCBCCTTCTTCEEEEEE-TTEEEEEEEEEECCTTCC
T ss_pred             CCCCCcchheEEEEeeEcchhhhHhhcC--cCCCceEEcc--CCCCccCcccCcCCEEEEE-CCEEEEEEEEEeCCCCCC
Confidence            11 1255789999999999999988754  4789999997  3446899999999999985 789999999999999988


Q ss_pred             CCCCeEEEeCcccHHHHHHHHhh
Q psy16044        409 SGYPDVYTKLSFYLPWIRKQINI  431 (436)
Q Consensus       409 ~~~p~v~t~V~~~~~WI~~~i~~  431 (436)
                      .+.|++||||+.|++||+++|+.
T Consensus       222 ~~~p~vyt~V~~~~~WI~~~~~~  244 (245)
T 1t8o_A          222 TSTPGVYARVTALVNWVQQTLAA  244 (245)
T ss_dssp             TTSEEEEEEGGGTHHHHHHHHHT
T ss_pred             CCCCEEEEEHHHHHHHHHHHHcc
Confidence            78899999999999999999975

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=1.6e-49  Score=370.58  Aligned_cols=249  Identities=31%  Similarity=0.552  Sum_probs=189.3

Q ss_pred             CCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCC-CCCCcceEEEeccccCCccCC
Q psy16044         24 QPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFS-LPIPELWTAVLGDWDRTEEEK  102 (436)
Q Consensus        24 ~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~-~~~~~~~~v~~g~~~~~~~~~  102 (436)
                      ..||+||.+|..++|||+|+|+....    ..++|+||||+++||||||||+...... ......+.|++|.++......
T Consensus        28 ~~rIvgG~~a~~~~~Pw~v~l~~~~~----~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~  103 (289)
T 2bdy_A           28 DGRIVEGSDAEIGMSPWQVMLFRKSP----QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYER  103 (289)
T ss_dssp             ---CBSCEECCTTSCTTEEEEEETTT----TEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCT
T ss_pred             CCeEECCEECCCCCCCCeEEEEECCC----CCEEEEEEEecCCEEEEcHHhcccCccccccCcccEEEEEccccccccCC
Confidence            46999999999999999999975421    1689999999999999999998542110 112456899999987654332


Q ss_pred             -ceEEEeeeEEEeCCCCC---CCCCceeEEEeCCCCCCCCCceeeeeecCCCCC--CCCCCCcEEEEecCccCCCCCccc
Q psy16044        103 -SEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRAVCLTDADKR--PVNPKQQCVATGWGRVKPKGDLVS  176 (436)
Q Consensus       103 -~~~~~~v~~i~~hp~y~---~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~--~~~~~~~~~~~GwG~~~~~~~~~~  176 (436)
                       ..+.+.|+++++||+|+   ...||||||||++|+. ++.+++|||||.....  ....+..++++|||.+......  
T Consensus       104 ~~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~-~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~--  180 (289)
T 2bdy_A          104 NIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA-FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA--  180 (289)
T ss_dssp             TTCEEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCC-CBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC-----
T ss_pred             CcceeeeeEEEEECCCCCCCCCCCCeEEEEEECCccc-cCCcccccCCCCccccccccCCCCEEEEECCCcCCCcccc--
Confidence             34667899999999997   3579999999999999 7788999999874211  1234566677777644311000  


Q ss_pred             cceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCccccc
Q psy16044        177 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSH  256 (436)
Q Consensus       177 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~  256 (436)
                                                                            .                         
T Consensus       181 ------------------------------------------------------~-------------------------  181 (289)
T 2bdy_A          181 ------------------------------------------------------N-------------------------  181 (289)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------------------------C-------------------------
Confidence                                                                  0                         


Q ss_pred             ccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCcccc
Q psy16044        257 RQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK  336 (436)
Q Consensus       257 v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~  336 (436)
                                                                                              .....+..
T Consensus       182 ------------------------------------------------------------------------~~~~~~~~  189 (289)
T 2bdy_A          182 ------------------------------------------------------------------------VGKGQPSV  189 (289)
T ss_dssp             ---------------------------------------------------------------------------CCCSB
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    00011457


Q ss_pred             ceEEEEEeeCccccccccCCCccCCCCceecccCC---CCCCCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCCCCC
Q psy16044        337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD---GFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKSGYP  412 (436)
Q Consensus       337 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~---~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~~~p  412 (436)
                      |+++.+++++.+.|+..+..  .++++|||++...   ...+.|+|||||||+|.. .+++|+|+||+|||.+|+..+.|
T Consensus       190 L~~~~v~i~~~~~C~~~~~~--~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p  267 (289)
T 2bdy_A          190 LQVVNLPIVERPVCKDSTRI--RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKY  267 (289)
T ss_dssp             CEEEEEEBCCHHHHHHTCSS--CCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCC
T ss_pred             ceEEEEEEECHHHhhccccC--cCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEECCCCCCCCCC
Confidence            99999999999999988754  4789999997543   246899999999999985 36899999999999999987889


Q ss_pred             eEEEeCcccHHHHHHHHhhh
Q psy16044        413 DVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       413 ~v~t~V~~~~~WI~~~i~~~  432 (436)
                      ++||||+.|++||+++|+..
T Consensus       268 ~vyt~V~~y~~WI~~~i~~~  287 (289)
T 2bdy_A          268 GFYTHVFRLKKWIQKVIDQF  287 (289)
T ss_dssp             EEEEETGGGHHHHHHHHHC-
T ss_pred             EEEEEHHHHHHHHHHHHHhc
Confidence            99999999999999999754

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=1.6e-48  Score=354.37  Aligned_cols=235  Identities=35%  Similarity=0.706  Sum_probs=187.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+....  +...++|+||||+++||||||||+..       ...+.|++|..++.......+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~--~~~~~~CgGtLI~~~~VLTAAHC~~~-------~~~~~V~~G~~~~~~~~~~~~~   71 (241)
T 1bru_P            1 VVGGEDARPNSWPWQVSLQYDSS--GQWRHTCGGTLVDQSWVLTAAHCISS-------SRTYRVVLGRHSLSTNEPGSLA   71 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEET--TEEEEEEEEEEEETTEEEECGGGCCT-------TSCEEEEESCSBSSSCCTTCEE
T ss_pred             CCCCeECCCCCcCcEEEEEEecC--CceeeEEEeEEeeCCEEEEcHHhccc-------CCceEEEEEcccccCCCCccEE
Confidence            78999999999999999987532  11248999999999999999999862       2567899999887665556688


Q ss_pred             EeeeEEEeCCCCCC--CC--CceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFHN--YH--HDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~~--~~--~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.|+++++||+|+.  ..  +|||||||++|+. ++..++|||||.... ....+..++++|||                
T Consensus        72 ~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG----------------  133 (241)
T 1bru_P           72 VKVSKLVVHQDWNSNQLSNGNDIALLKLASPVS-LTDKIQLGCLPAAGT-ILPNNYVCYVTGWG----------------  133 (241)
T ss_dssp             EEEEEEEECTTCCTTCGGGCCCCEEEEESSCCC-CCSSCCCCBCCCTTC-CCCTTCEEEEEESC----------------
T ss_pred             EEEEEEEECCCCCCCCCCCCCcEEEEEeCCCcc-cCCccCCcccCCCcC-CCCCCCEEEEEEcc----------------
Confidence            99999999999973  34  9999999999999 677899999987421 12334455555555                


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceec
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLI  262 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~  262 (436)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (241)
T 1bru_P          134 --------------------------------------------------------------------------------  133 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEE
Q psy16044        263 NGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  342 (436)
Q Consensus       263 ~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~  342 (436)
                                                                                     .+......+..|+++.+
T Consensus       134 ---------------------------------------------------------------~~~~~~~~~~~L~~~~~  150 (241)
T 1bru_P          134 ---------------------------------------------------------------RLQTNGASPDILQQGQL  150 (241)
T ss_dssp             ---------------------------------------------------------------CSSTTSCCCSBCEEEEE
T ss_pred             ---------------------------------------------------------------ccCCCCCCCccceeCEE
Confidence                                                                           43322233567889999


Q ss_pred             EeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcc
Q psy16044        343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSF  420 (436)
Q Consensus       343 ~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~  420 (436)
                      ++++.++|+..+.....++++|||++. .+..+.|.|||||||++...+++|+|+||+|||.  +|+..+.|++||||++
T Consensus       151 ~i~~~~~C~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~  229 (241)
T 1bru_P          151 LVVDYATCSKPGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSN  229 (241)
T ss_dssp             EEECHHHHTSTTTTGGGCCTTEEEECC-SSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGG
T ss_pred             EEecHHHhCcccccCCcCCCceEeecC-CCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEHHH
Confidence            999999998863222247899999984 4456899999999999986578999999999997  7887778999999999


Q ss_pred             cHHHHHHHHhhh
Q psy16044        421 YLPWIRKQINIA  432 (436)
Q Consensus       421 ~~~WI~~~i~~~  432 (436)
                      |++||+++|+++
T Consensus       230 ~~~WI~~~i~~n  241 (241)
T 1bru_P          230 YIDWINSVIANN  241 (241)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             hHHHHHHHHhcC
Confidence            999999999753

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=2.2e-48  Score=354.89  Aligned_cols=244  Identities=34%  Similarity=0.668  Sum_probs=192.0

Q ss_pred             CCCCCCccCCC-CCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEE
Q psy16044         12 RDCGVGIRYSH-RQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTA   90 (436)
Q Consensus        12 ~~CG~~~~~~~-~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v   90 (436)
                      .+||++...+. ...||+||++|.+++|||+|+|+...   +  .++|+||||+++||||||||+...    ..+..+.|
T Consensus         2 ~~cg~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~---~--~~~CgGsLIs~~~VLTAAHC~~~~----~~~~~~~v   72 (247)
T 1ddj_A            2 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF---G--MHFCGGTLISPEWVLTAAHCLEKS----PRPSSYKV   72 (247)
T ss_dssp             CCTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTT---S--CEEEEEEEEETTEEEECGGGGTTC----SCGGGCEE
T ss_pred             CccCCCCCCCcccCCCcCCCEECCCCCCCcEEEEEcCC---C--CeEEEEEEeeCCEEEEcHHHcCCC----CCCccEEE
Confidence            36997654432 24699999999999999999997532   1  689999999999999999999653    12456899


Q ss_pred             EeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCC
Q psy16044         91 VLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP  170 (436)
Q Consensus        91 ~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~  170 (436)
                      ++|.++........+.+.|.+++.||.    .||||||||++|+. ++.+++|||||..+ .....+..++++|||    
T Consensus        73 ~~G~~~~~~~~~~~~~~~v~~~~~hp~----~~DIALl~L~~~v~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG----  142 (247)
T 1ddj_A           73 ILGAHQEVNLEPHVQEIEVSRLFLEPT----RKDIALLKLSSPAV-ITDKVIPACLPSPN-YVVADRTECFITGWG----  142 (247)
T ss_dssp             EESCSBSSSCCTTCEEEEEEEEEECTT----SCSCEEEEESSCCC-CCSSCCCCBCCCTT-CCCCTTCEEEEEECC----
T ss_pred             EEcccccCccCCceEEEEeeeEEcCCC----CCcEEEEEeCCcee-eCCCEEeeecCCcc-cCCCCCCEEEEEEcc----
Confidence            999887655555567889999999997    48999999999999 67889999998742 222334455555555    


Q ss_pred             CCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC
Q psy16044        171 KGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV  250 (436)
Q Consensus       171 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~  250 (436)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (247)
T 1ddj_A          143 --------------------------------------------------------------------------------  142 (247)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC
Q psy16044        251 GIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK  330 (436)
Q Consensus       251 ~~~y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~  330 (436)
                                                                                                 .+...
T Consensus       143 ---------------------------------------------------------------------------~~~~~  147 (247)
T 1ddj_A          143 ---------------------------------------------------------------------------ETQGT  147 (247)
T ss_dssp             ---------------------------------------------------------------------------CCSSS
T ss_pred             ---------------------------------------------------------------------------cCCCC
Confidence                                                                                       33211


Q ss_pred             CCccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCC
Q psy16044        331 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSG  410 (436)
Q Consensus       331 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~  410 (436)
                       ..+..|+++.+++++.++|++.......+.+.|||++...++.+.|.|||||||++.. +++|+|+||+|||.+|+..+
T Consensus       148 -~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~~l~GI~S~g~~C~~~~  225 (247)
T 1ddj_A          148 -FGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFE-KDKYILQGVTSWGLGCARPN  225 (247)
T ss_dssp             -TTTTBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEC-SSSEEEEEEECGGGCCBBTT
T ss_pred             -CCCccceEEeeeecCHHHhcchhccCCCCcCCeEeecCCCCCCccccCcCcCcEEEEE-CCcEEEEEEEEECCCCCCCC
Confidence             1245678888889999999875322224688999998766667899999999999984 68999999999999998777


Q ss_pred             CCeEEEeCcccHHHHHHHHhh
Q psy16044        411 YPDVYTKLSFYLPWIRKQINI  431 (436)
Q Consensus       411 ~p~v~t~V~~~~~WI~~~i~~  431 (436)
                      .|++||||+.|++||+++|++
T Consensus       226 ~p~vyt~V~~y~~WI~~~~~~  246 (247)
T 1ddj_A          226 KPGVYVRVSRFVTWIEGVMRN  246 (247)
T ss_dssp             BCEEEEEGGGSHHHHHHHHHT
T ss_pred             CCEEEEEhHHhHHHHHHHhhc
Confidence            899999999999999999975

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=9.8e-49  Score=358.02  Aligned_cols=242  Identities=33%  Similarity=0.648  Sum_probs=199.4

Q ss_pred             CCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEec
Q psy16044         14 CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLG   93 (436)
Q Consensus        14 CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g   93 (436)
                      ||.+...+....||+||++|.+++|||+|+|++....  ...++|+||||+++||||||||+.+       ...+.|++|
T Consensus         1 cg~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~--~~~~~CgGtLIs~~~VLTAAHC~~~-------~~~~~V~~G   71 (251)
T 1pyt_D            1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDN--TWRHTCGGTLITPNHVLTAAHCISN-------TLTYRVALG   71 (251)
T ss_dssp             CCCCSSCCCSSSSCCSSCCCCTTSSTTEEEEEEEETT--EEEEEEEEEEEETTEEEECGGGCCT-------TCCEEEEES
T ss_pred             CCCCccCCccCCccCCCEECCCCCCCceEEEEEEcCC--CcceEEEeEEecCCEEEECHHHhCC-------CceEEEEEc
Confidence            7866555556789999999999999999999865321  1268999999999999999999864       356789999


Q ss_pred             cccCCcc-CCceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCC
Q psy16044         94 DWDRTEE-EKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP  170 (436)
Q Consensus        94 ~~~~~~~-~~~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~  170 (436)
                      .++.... ....+.+.|+++++||+|+  ...||||||||++|+. ++.+++|||||.... ....+..++++|||.+..
T Consensus        72 ~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG~~~~  149 (251)
T 1pyt_D           72 KNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVE-LGDTIQVACLPSEGS-LLPQDYPCFVTGWGRLYT  149 (251)
T ss_dssp             CSBTTCSCCSSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCC-CCSSCCCCBCCCTTC-CCCTTCEEEECBCCCSSC
T ss_pred             ccccccCCCCCcEEEEEEEEEECCCCCCCCCCCCEEEEEECCCcc-cCCCeeeeEcCCCcc-cCCCCCEEEEEecccCCC
Confidence            9876532 2345778899999999997  4689999999999999 788899999998633 345688999999999887


Q ss_pred             CCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC-CCC
Q psy16044        171 KGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCG  249 (436)
Q Consensus       171 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~-~C~  249 (436)
                      .+..+..|++..+++++.+.|...+.......+.||||+. .+..++|.|||||||++.. +++|+|+||+|||.+ .|+
T Consensus       150 ~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-~~~~~l~GI~S~g~~~~C~  227 (251)
T 1pyt_D          150 NGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGG-DGVISACNGDSGGPLNCQA-DGQWDVRGIVSFGSGLSCN  227 (251)
T ss_dssp             CSCCCSBCBCCEEECBCHHHHTSTTTTTTTCCTTEEEECC-SCSSCCCCSCTTCEEEEES-SSSEEEEEEEEECCSSCTT
T ss_pred             CCCcccchheeEeEeeCHHHcchhhccCCCcCCCeEEecC-CCCCccCCCCCCCceEEEE-CCCEEEEEEEEECCCCCCC
Confidence            6666778999999999999998765433345679999986 4447899999999999974 789999999999973 465


Q ss_pred             ---CCcccccccceecCCcccc
Q psy16044        250 ---VGIRYSHRQPRLINGKESI  268 (436)
Q Consensus       250 ---~~~~y~~v~~~~~~~~~~~  268 (436)
                         .+.+|++|.+|..||.+.+
T Consensus       228 ~~~~p~vyt~V~~~~~WI~~~~  249 (251)
T 1pyt_D          228 TFKKPTVFTRVSAYIDWINQKL  249 (251)
T ss_dssp             BTTBCEEEEEGGGGHHHHHHHT
T ss_pred             CCCCCeEEEEHHHHHHHHHHHh
Confidence               3679999999999998765

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=2.6e-48  Score=360.82  Aligned_cols=251  Identities=26%  Similarity=0.579  Sum_probs=201.3

Q ss_pred             CceecCCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCc
Q psy16044          7 TVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE   86 (436)
Q Consensus         7 ~~~~~~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~   86 (436)
                      +..++..||.+    ....||+||++|.+++|||+|+|++.... +...++|+||||+++||||||||+...... ....
T Consensus         7 ~~~l~~~CG~~----~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~-~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~-~~~~   80 (278)
T 2olg_A            7 PELLPNDCGYQ----VEADKILNGDDTVPEEFPWTAMIGYKNSS-NFEQFACGGSLINNRYIVTAAHCVAGRVLR-VVGA   80 (278)
T ss_dssp             GGGSCSSCSCC----CCCCCSCCSSBCCTTSSTTEEEEEEECTT-CCEEEEEEEEECSSSEEEECGGGTSTHHHH-HTCE
T ss_pred             cccChhHhCCC----CCCCceECCEECCCCCCCceEEEEEecCC-CCcceeEEEEEEeCCEEEEhHHhCCCcccc-cccc
Confidence            34456689954    24579999999999999999999876432 222689999999999999999998652100 0124


Q ss_pred             ceEEEeccccCCccC-----------CceEEEeeeEEEeCCCCCC----CCCceeEEEeCCCCCCCCCceeeeeecCCCC
Q psy16044         87 LWTAVLGDWDRTEEE-----------KSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVRAVCLTDADK  151 (436)
Q Consensus        87 ~~~v~~g~~~~~~~~-----------~~~~~~~v~~i~~hp~y~~----~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~  151 (436)
                      .+.|++|.++.....           ...+.+.|+++++||+|+.    ..||||||||++|+. ++.+++|||||....
T Consensus        81 ~~~V~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~-~~~~v~picLp~~~~  159 (278)
T 2olg_A           81 LNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVE-FTNYIRPVCLPQPNE  159 (278)
T ss_dssp             EEEEEESCSBTTCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCC-CCSSCCCCBCCCTTC
T ss_pred             eeEEEeCcccCCCCccccccccccCCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCc-CCCCcCccCcCCCCC
Confidence            578999988765432           2357789999999999973    269999999999999 788899999998633


Q ss_pred             CCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCC-CcCCcCCeEEeccCCCCCCCccCCCCCeeeeEe
Q psy16044        152 RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD-SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL  230 (436)
Q Consensus       152 ~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~  230 (436)
                       ....+..++++|||.+.. +..+..|+++.+++++.+.|...+.. ....++.||||+...+ .++|.|||||||++..
T Consensus       160 -~~~~g~~~~v~GWG~t~~-~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~-~~~C~GDSGGPL~~~~  236 (278)
T 2olg_A          160 -EVQVGQRLTVVGWGRTET-GQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKA-KDSCGGDSGGPLLAER  236 (278)
T ss_dssp             -CCCTTCEEEEEESCCSSS-CCCCSBCEEEEEEBCCGGGGGGGGSSTTCCCCTTEEEECCTTC-TTCCCCCTTCEEEEEE
T ss_pred             -CcCCCCEEEEEcCCcCCC-CCccchhhcccccccCHHHHHHHhccccccCCCceEeeecCCC-CeeCCCccCcceEEEc
Confidence             345789999999998874 34567899999999999999988754 2346779999987554 7899999999999986


Q ss_pred             cCCcEEEEEEEeEcCCCCCC---CcccccccceecCCcccc
Q psy16044        231 KDGRWYLAGITSFGSGYCGV---GIRYSHRQPRLINGKESI  268 (436)
Q Consensus       231 ~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~~~~~~~~~  268 (436)
                      .+++|+|+||+|||.+ |+.   +.+|++|.+|..||.+.+
T Consensus       237 ~~~~~~l~GIvS~g~~-C~~~~~p~vyt~V~~y~~WI~~~i  276 (278)
T 2olg_A          237 ANQQFFLEGLVSFGAT-CGTEGWPGIYTKVGKYRDWIEGNI  276 (278)
T ss_dssp             GGGEEEEEEEEEECCB-CSTTCBCEEEEEGGGGHHHHHTTC
T ss_pred             CCCcEEEEEEEEECCC-CCCCCCCcEEeEHHHHHHHHHHhh
Confidence            6789999999999976 543   679999999999998765

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=3.3e-48  Score=354.34  Aligned_cols=236  Identities=36%  Similarity=0.669  Sum_probs=189.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+...     ..++|+||||+++||||||||+..       ...+.|++|.++........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~-----~~~~CgGsLI~~~~VLTAAHC~~~-------~~~~~v~~G~~~~~~~~~~~~~   68 (250)
T 1aut_C            1 LIDGKMTRRGDSPWQVVLLDSK-----KKLACGAVLIHPSWVLTAAHCMDE-------SKKLLVRLGEYDLRRWEKWELD   68 (250)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT-----SCEEEEEEEEETTEEEECGGGSSS-------CSCCEEEESCCBTTCCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEecCC-----CceEEEEEEeeCCEEEEChHHcCC-------CCceEEEEcccccCCCCCccEE
Confidence            7899999999999999997532     168999999999999999999864       2457899999887665556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCC---CCCCCCCcEEEEecCccCCCCCccccceee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADK---RPVNPKQQCVATGWGRVKPKGDLVSKLRQI  181 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~---~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~  181 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++.+++|||||....   .....+..++++|||.+......       
T Consensus        69 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~-------  140 (250)
T 1aut_C           69 LDIKEVFVHPNYSKSTTDNDIALLHLAQPAT-LSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKE-------  140 (250)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCC-CBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSC-------
T ss_pred             EEEEEEEECCCCCCCCCCCcEEEEEECCccc-CCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCcc-------
Confidence            9999999999997  4679999999999999 778899999987421   11234566777777743311000       


Q ss_pred             eeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCccccccccee
Q psy16044        182 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRL  261 (436)
Q Consensus       182 ~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~  261 (436)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (250)
T 1aut_C          141 --------------------------------------------------------------------------------  140 (250)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEE
Q psy16044        262 INGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  341 (436)
Q Consensus       262 ~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~  341 (436)
                                                                                         .....+..|+++.
T Consensus       141 -------------------------------------------------------------------~~~~~~~~L~~~~  153 (250)
T 1aut_C          141 -------------------------------------------------------------------AKRNRTFVLNFIK  153 (250)
T ss_dssp             -------------------------------------------------------------------CCSSCSSBCEEEE
T ss_pred             -------------------------------------------------------------------ccccccceeeEEE
Confidence                                                                               0001134688999


Q ss_pred             EEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCccc
Q psy16044        342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFY  421 (436)
Q Consensus       342 ~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~  421 (436)
                      +++++.++|++.+..  .+.++|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|
T Consensus       154 ~~i~~~~~C~~~~~~--~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~-~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y  230 (250)
T 1aut_C          154 IPVVPHNECSEVMSN--MVSENMLCAGILGDRQDACEGDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRY  230 (250)
T ss_dssp             EEEECHHHHHHHCSS--CCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEECGGGT
T ss_pred             EEEecHHHhhHHhcc--CCCCCEEEeCCCCCCCCCCCCCCchheEEEE-CCeEEEEEEEEECCCCCCCCCCEEEEEHHHH
Confidence            999999999988765  4689999998766667899999999999975 7899999999999999877789999999999


Q ss_pred             HHHHHHHHhhh
Q psy16044        422 LPWIRKQINIA  432 (436)
Q Consensus       422 ~~WI~~~i~~~  432 (436)
                      ++||+++|+..
T Consensus       231 ~~WI~~~~~~~  241 (250)
T 1aut_C          231 LDWIHGHIRDK  241 (250)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHhhcc
Confidence            99999999754

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=7e-48  Score=372.14  Aligned_cols=257  Identities=25%  Similarity=0.537  Sum_probs=194.4

Q ss_pred             cCCCCCCccCCCCCCeEeCC-cccCCCCCcceEEEeeeccC--CCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcc
Q psy16044         11 ARDCGVGIRYSHRQPRLING-KESIRGAWPWQVSLQVLHPR--LGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL   87 (436)
Q Consensus        11 ~~~CG~~~~~~~~~~~i~~G-~~a~~~~~Pw~v~i~~~~~~--~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~   87 (436)
                      +..||.+... ....||+|| .+|..++|||+|+|+.....  .+...++|+||||+++||||||||+.....   ....
T Consensus       115 ~~~CG~~~~~-~~~~rIvgG~~~a~~~e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~---~~~~  190 (394)
T 2b9l_A          115 PSFCGIRNER-GLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQS---NLDA  190 (394)
T ss_dssp             CCCTTBCCTT-CSSCEEESCSSBCCTTSSTTEEEEEECC------CCSEEEEEEEEETTEEEECHHHHGGGTT---CGGG
T ss_pred             CCCCCCCCCC-CCCceeeCCccccCCCCCCcEEEEeeccccccccccceEeeEEEEeCCEEEeccceecCCCC---Cccc
Confidence            4679954321 124699999 89999999999999875321  112368999999999999999999965311   2356


Q ss_pred             eEEEeccccCCccCC--ceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEE
Q psy16044         88 WTAVLGDWDRTEEEK--SEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVAT  163 (436)
Q Consensus        88 ~~v~~g~~~~~~~~~--~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~  163 (436)
                      +.|++|.++......  ..+.+.|+++++||+|+  ...||||||||++|+. ++.+|+|||||....  ...+..|+++
T Consensus       191 ~~V~~G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~-~~~~v~PicLp~~~~--~~~~~~~~v~  267 (394)
T 2b9l_A          191 IKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLV-QADNIGTICLPQQSQ--IFDSTECFAS  267 (394)
T ss_dssp             EEEEESCCBTTCCCSSSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCB-CCTTCCCCBCCCTTC--CCCCSCEEEE
T ss_pred             EEEEeceeeccCCcCCCccEEEEEEEEEECCCCCCCccccceEEEEecCccc-cCCceeeeEcCCccc--CccCCEEEEE
Confidence            899999987654332  35788999999999998  4689999999999999 778899999997532  2234667777


Q ss_pred             ecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeE
Q psy16044        164 GWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF  243 (436)
Q Consensus       164 GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~  243 (436)
                      |||.+.....                                                                      
T Consensus       268 GWG~t~~~~~----------------------------------------------------------------------  277 (394)
T 2b9l_A          268 GWGKKEFGSR----------------------------------------------------------------------  277 (394)
T ss_dssp             ECCTTTTTCT----------------------------------------------------------------------
T ss_pred             eccCccCCCC----------------------------------------------------------------------
Confidence            7775432110                                                                      


Q ss_pred             cCCCCCCCcccccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEe
Q psy16044        244 GSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATG  323 (436)
Q Consensus       244 g~~~C~~~~~y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~G  323 (436)
                                                                                                      
T Consensus       278 --------------------------------------------------------------------------------  277 (394)
T 2b9l_A          278 --------------------------------------------------------------------------------  277 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCccccceEEEEEeeCccccccccCC-----CccCCCCceecccCCCCCCCccCCCCceeeeEe--cCCcEEE
Q psy16044        324 WGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD-----SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL--KDGRWYL  396 (436)
Q Consensus       324 wg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~--~~~~~~l  396 (436)
                             ...+..|+++.+++++.++|+..+..     .+.+++.||||+... +++.|.|||||||+|..  .+++|+|
T Consensus       278 -------~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~~-g~d~C~GDSGGPLv~~~~~~~~~~~l  349 (394)
T 2b9l_A          278 -------HRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQ-GKDTCTGDGGSPLFCPDPRNPSRYMQ  349 (394)
T ss_dssp             -------TSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCBS-SCSCCSSCTTCEEEEEETTEEEEEEE
T ss_pred             -------CcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCCC-CCcCCCCCcchhhEEEEcCCCCeEEE
Confidence                   01234567777777777777665422     124688999998654 46899999999999974  3578999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHhhh
Q psy16044        397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       397 ~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      +||+|||.+|+..+.|+|||||+.|++||+++|+..
T Consensus       350 vGIvS~G~~C~~~~~PgVYT~V~~y~~WI~~~i~~~  385 (394)
T 2b9l_A          350 MGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQAK  385 (394)
T ss_dssp             EEEESCTTCCCBSSSCEEEEEGGGGHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHHhc
Confidence            999999999987788999999999999999999754

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=3.2e-48  Score=361.45  Aligned_cols=238  Identities=29%  Similarity=0.528  Sum_probs=193.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccC-----
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEE-----  101 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~-----  101 (436)
                      |+||++|..++|||+|+|++.....+...++|+||||+++||||||||+....    ....+.|++|..+.....     
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~~   76 (290)
T 1fiw_A            1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKK----KVTDWRLIFGAKEVEWGTNKPVK   76 (290)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTTTEEEEEEEEEEEETTEEEECGGGGSSCC----SGGGEEEEESCSBCCTTCCSCCC
T ss_pred             CCCCEECCCCCCCcEEEEEEeccCCCccceEEEEEEeeCCEEEECHHhCCCCC----CCcceEEEecceEEeccCCCcCC
Confidence            78999999999999999987532222225899999999999999999996531    235688999987654321     


Q ss_pred             CceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC-ccccc
Q psy16044        102 KSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSKL  178 (436)
Q Consensus       102 ~~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~-~~~~l  178 (436)
                      ...+.+.|+++++||+|+  ...||||||||++|+. ++.+++|||||.........+..|+++|||.+...+. .+..|
T Consensus        77 ~~~~~~~V~~i~~Hp~y~~~~~~nDIALl~L~~~v~-~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L  155 (290)
T 1fiw_A           77 PPLQERYVEKIIIHEKYSASSEANDIALMKITPPVT-CGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPML  155 (290)
T ss_dssp             TTCEEEEEEEEEECTTCBTTTTBTCCEEEEEESCCC-CBTTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBC
T ss_pred             CCceEEEEEEEEECCCCCCCCCCCCEEEEEECCccc-cCCccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCcee
Confidence            235778899999999997  4689999999999999 7888999999975433344578999999998876543 45679


Q ss_pred             eeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEec-CCcEEEEEEEeEcCCCCC--CCcccc
Q psy16044        179 RQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGYCG--VGIRYS  255 (436)
Q Consensus       179 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~-~~~~~l~GI~S~g~~~C~--~~~~y~  255 (436)
                      +++.+++++.+.|+..+.......+.||||+...+..+.|.|||||||++... +++|+|+||+|||.+|+.  .+.+|+
T Consensus       156 ~~~~v~i~~~~~C~~~~~~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt  235 (290)
T 1fiw_A          156 QEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYT  235 (290)
T ss_dssp             EEEEEEEECHHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSSSSBTTBCEEEE
T ss_pred             eEEEEEEecHHHhccccccCCcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECCCCCCCCCCeEEE
Confidence            99999999999998753222345679999997777689999999999999753 689999999999988542  467999


Q ss_pred             cccceecCCccccC
Q psy16044        256 HRQPRLINGKESIR  269 (436)
Q Consensus       256 ~v~~~~~~~~~~~~  269 (436)
                      +|.+|..||.+.+.
T Consensus       236 ~V~~y~~WI~~~~~  249 (290)
T 1fiw_A          236 STWSYLNWIASKIG  249 (290)
T ss_dssp             ESGGGHHHHHHHHC
T ss_pred             EHHHhHHHHHHHhC
Confidence            99999999988775

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=9.3e-48  Score=347.52  Aligned_cols=226  Identities=36%  Similarity=0.607  Sum_probs=190.4

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+..+      .++|+||||+++||||||||+...    ..+..+.|++|.....    ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAhC~~~~----~~~~~~~v~~G~~~~~----~~~~   66 (232)
T 2oq5_A            1 IVGGTEVEEGEWPWQASLQWDG------SHRCGATLINATWLVSAAHCFTTY----KNPARWTASFGVTIKP----SKMK   66 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGGSSC----CCGGGEEEEESSBSTT----CSEE
T ss_pred             CCCCEECCCCCCCeeEEEEeCC------CeeEEEEEEcCCEEEECHHHcCCC----CCCceEEEEEeeEECC----CceE
Confidence            6899999999999999998643      689999999999999999999753    1245688999976432    3467


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...+|||||||++|+. ++..++|||||... .....+..++++|||.+...+..+..|+++.++
T Consensus        67 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~  144 (232)
T 2oq5_A           67 RGLRRIIVHEKYKHPSHDYDISLAELSSPVP-YTNAVHRVCLPDAS-YEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVT  144 (232)
T ss_dssp             EEEEEEEECTTCCTTCCTTCCEEEEESSCCC-CCSSSCCCBCCCTT-CCCCTTCEEEEEESCCSSTTCCCCSBCEEEEEE
T ss_pred             EeEEEEEeCCCCCCCCCCCCEEEEEecCCCc-cCCceeEeECCCcc-ccCCCCCEEEEEECCccCCCCCCCceeeEeEEE
Confidence            8899999999997  4689999999999999 78889999999853 334568899999999988766667889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccceec
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPRLI  262 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~~~  262 (436)
                      +++.+.|+..+.......+.||||+...+..++|.|||||||++...+++|+|+||+|||.+|+.  .+.+|++|.++..
T Consensus       145 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~  224 (232)
T 2oq5_A          145 LIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRD  224 (232)
T ss_dssp             EECHHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSBTTBCEEEEETGGGHH
T ss_pred             EeCHHHcCCccccCCccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCCCCCCCCCCeEEEEhHHhHH
Confidence            99999998765433345679999998776689999999999999866789999999999987542  4679999999999


Q ss_pred             CCcccc
Q psy16044        263 NGKESI  268 (436)
Q Consensus       263 ~~~~~~  268 (436)
                      ||.+.+
T Consensus       225 WI~~~~  230 (232)
T 2oq5_A          225 WITSKT  230 (232)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998654

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=3.5e-48  Score=351.62  Aligned_cols=232  Identities=30%  Similarity=0.589  Sum_probs=194.3

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.+|.+++|||+|+|+....   ...++|+||||+++||||||||+...    ..+..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~---~~~~~CgGtLI~~~~VLTAAHC~~~~----~~~~~~~v~~G~~~~~~~~~~~~~   73 (238)
T 3bg8_A            1 IVGGTASVRGEWPWQVTLHTTSP---TQRHLCGGSIIGNQWILTAAHCFYGV----ESPKILRVYSGILNQSEIKEDTSF   73 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEECSS---SCEEEEEEEEEETTEEEECGGGGTTC----CCGGGEEEECSCSBGGGCCTTSCC
T ss_pred             CCCCeECCCCCcCcEEEEEeecC---CCcEEEEEEEeeCCEEEECHHHCCCC----CCCceEEEEEeeccCCcCCCCceE
Confidence            78999999999999999986532   12689999999999999999999653    124568899998876654445577


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++..++|||||.... ....+..|+++|||.+...+..+..|++..++
T Consensus        74 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~  151 (238)
T 3bg8_A           74 FGVQEIIIHDQYKMAESGYDIALLKLETTVN-YTDSQRPISLPSKGE-RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIP  151 (238)
T ss_dssp             EEEEEEEECTTCCCGGGSCCCEEEEESSCCC-CBTTBCCCBCCCGGG-GSSCCCCEEEEESCCSSSSCCCCSBCEEEECC
T ss_pred             EeeEEEEECCCCCCCCCCCcEEEEEECCccc-cCCCcccCCCCCCcc-CcCCCCeEEEEecCCCCCCCChhhhhcEeeEE
Confidence            8899999999998  3679999999999999 778899999998532 24567899999999988666667889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccceec
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPRLI  262 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~~~  262 (436)
                      +++.+.|+..+... ...+.||||+...+..++|.|||||||++.. +++|+|+||+|||.+|+.  .+.+|++|.+|..
T Consensus       152 ~~~~~~C~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~  229 (238)
T 3bg8_A          152 LVTNEECQKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVD  229 (238)
T ss_dssp             EECHHHHHHHCTTS-CCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHH
T ss_pred             EECHHHhhhhhcCC-CCCCCeEeecCCCCCCCcCCCCCCcceEEEE-CCeEEEEEEEEECCCCCCCCCCcEEEeHHHHHH
Confidence            99999999887542 3567999999776668999999999999984 789999999999987543  4689999999999


Q ss_pred             CCccccC
Q psy16044        263 NGKESIR  269 (436)
Q Consensus       263 ~~~~~~~  269 (436)
                      ||.+.+.
T Consensus       230 WI~~~~~  236 (238)
T 3bg8_A          230 WILEKTQ  236 (238)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHh
Confidence            9987653

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=1.5e-47  Score=345.03  Aligned_cols=224  Identities=31%  Similarity=0.638  Sum_probs=185.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...     ..++|+||||+++||||||||+..       ...+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~-----~~~~CgGtLI~~~~VLTAAHC~~~-------~~~~~V~~G~~~~~~~~~~~~~   68 (228)
T 1fxy_A            1 IVGGYNCKDGEVPWQALLINEE-----NEGFCGGTILSEFYILTAAHCLYQ-------AKRFKVRVGDRNTEQEEGGEAV   68 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT-----SCEEEEEEECSSSEEEECGGGTTS-------CSSCEEEEECSCTTTCCCCEEE
T ss_pred             CCCCEECCCCCcCcEEEEEcCC-----CCeeEEEEEeeCCEEEECHHHCCC-------CCcEEEEECccCccccCCCcEE
Confidence            6899999999999999997542     158999999999999999999853       2457899998877665556788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|++++.||+|+  ...||||||||++|+. ++.+++|||||...   ...+..++++|||.+.               
T Consensus        69 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~---~~~~~~~~v~GwG~~~---------------  129 (228)
T 1fxy_A           69 HEVEVVIKHNRFTKETYDFDIAVLRLKTPIT-FRMNVAPASLPTAP---PATGTKCLISGWGNTA---------------  129 (228)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCC-CBTTBCCCCCCSSC---CCTTCEEEEEESSCCC---------------
T ss_pred             EEEEEEEECCCCCCCCCcCcEEEEEECCccc-CCCceeccCCCCCC---CCCCCEEEEEecCccC---------------
Confidence            8999999999997  4679999999999999 67789999998742   2356667777776432               


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (228)
T 1fxy_A          130 --------------------------------------------------------------------------------  129 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCC-ccccceEEEEE
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSKLRQIRVP  343 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~  343 (436)
                                                                                      .... .+..|+++.++
T Consensus       130 ----------------------------------------------------------------~~~~~~~~~l~~~~~~  145 (228)
T 1fxy_A          130 ----------------------------------------------------------------SSGADYPDELQCLDAP  145 (228)
T ss_dssp             ----------------------------------------------------------------SSSCCCCSSCEEEEEE
T ss_pred             ----------------------------------------------------------------CCCCCCCccceEEEEE
Confidence                                                                            1111 24568899999


Q ss_pred             eeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHH
Q psy16044        344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       344 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~  423 (436)
                      +++.++|+..+..  .++++|||++...+..+.|.|||||||++++     +|+||+|||.+|+..+.|++||||++|++
T Consensus       146 ~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~  218 (228)
T 1fxy_A          146 VLSQAKCEASYPG--KITSNMFCVGFLEGGKDSCQGDSGGPVVCNG-----QLQGVVSWGDGCAQKNKPGVYTKVYNYVK  218 (228)
T ss_dssp             BCCHHHHHHHSTT--TCCTTEEEESCTTCSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSBTTBCEEEEEGGGGHH
T ss_pred             EeCHHHhHhhcCC--CCCCCEEEeccCCCCCccccCccccceEECC-----EEEEEEEECCCCCCCCCCEEEEEhHHHHH
Confidence            9999999988764  4688999998766667899999999999842     59999999999987778999999999999


Q ss_pred             HHHHHHhhh
Q psy16044        424 WIRKQINIA  432 (436)
Q Consensus       424 WI~~~i~~~  432 (436)
                      ||+++|+.+
T Consensus       219 WI~~~~~~~  227 (228)
T 1fxy_A          219 WIKNTIAAN  227 (228)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhcc
Confidence            999999764

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=9.5e-48  Score=348.53  Aligned_cols=232  Identities=32%  Similarity=0.547  Sum_probs=192.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.+|.+++|||+|+|+..... +. .++|+||||+++||||||||+.....  ..+..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~-~~-~~~CgGtLIs~~~VLTAAHC~~~~~~--~~~~~~~v~~G~~~~~~~~~~~~~   76 (237)
T 2f91_A            1 IVGGTDATLGEFPYQLSFQETFIG-FS-FHFCGASIYNENYAITAGHCVYGDDY--ENPSGLQIVAGELDMSVNEGSEQI   76 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETT-EE-EEEEEEEEEETTEEEECGGGTTTSCT--TSCCSEEEEESCSBTTSCCSCCEE
T ss_pred             CCCccCCCCCCCCcEEEEEEecCC-CC-cceEEEEEeeCCEEEEcHHhCCCCcc--CCcccEEEEECCeeccCCCCccEE
Confidence            789999999999999999875311 11 13499999999999999999975321  235678999999887655555688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++.+++|||||....   ..+..++++|||.+...+..+..|+++.++
T Consensus        77 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~---~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~  152 (237)
T 2f91_A           77 ITVSKIILHENFDYNLLDNDISLLKLSGSLT-FNDNVAPIALPEQGH---TATGDVIVTGWGTTSEGGNTPDVLQKVTVP  152 (237)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCBCCCTTC---CCCSEEEEEESCCSSTTCCCCSBCEEEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCcEEEEEECCCcc-cCCceeeccCCCCCC---CCCCcEEEEECCcCCCCCCccceeeEEEEe
Confidence            8999999999997  4689999999999999 778899999997532   467889999999988777677889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccceec
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPRLI  262 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~~~  262 (436)
                      +++.+.|+..+.. ....+.|||++...+..+.|.|||||||++. .+++|+|+||+|||.+|+.  .+.+|++|.+|..
T Consensus       153 ~~~~~~C~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~  230 (237)
T 2f91_A          153 LVSDEDCRADYGA-DEILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVD  230 (237)
T ss_dssp             EECHHHHHHHHCT-TTSCTTEEEECCTTCCCBCCTTCTTCEEEEC-TTSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHH
T ss_pred             EcCHHHhhhhhCC-CCcCCCeEEEecCCCCCCCCCCcCCCCeEEe-cCCCEEEEEEEEecCCCCCCCCCcEEEEHHHhHH
Confidence            9999999988752 2356799999977666899999999999997 5789999999999987442  3679999999999


Q ss_pred             CCcccc
Q psy16044        263 NGKESI  268 (436)
Q Consensus       263 ~~~~~~  268 (436)
                      ||.+.+
T Consensus       231 WI~~~~  236 (237)
T 2f91_A          231 WIKANA  236 (237)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            998653

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=1.5e-47  Score=356.29  Aligned_cols=246  Identities=28%  Similarity=0.535  Sum_probs=198.5

Q ss_pred             cCCCCCCccCCC-CCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceE
Q psy16044         11 ARDCGVGIRYSH-RQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT   89 (436)
Q Consensus        11 ~~~CG~~~~~~~-~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~   89 (436)
                      ...||.+..... ...||+||++|..++|||+|+|+..       .++|+||||+++||||||||+...    .....+.
T Consensus        19 ~~~CG~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~-------~~~CgGsLIs~~~VLTAAHC~~~~----~~~~~~~   87 (283)
T 1yc0_A           19 RQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIG-------DSFCAGSLVHTCWVVSAAHCFSHS----PPRDSVS   87 (283)
T ss_dssp             --CCSCCSCC-------CBSCEECCTTSSTTEEEEEET-------TEEEEEEEEETTEEEECGGGGTTC----CCGGGEE
T ss_pred             CCCcCCcccccccCcCceECCeECCCCCCCeEEEEEcC-------CcEEEEEEeeCCEEEECHHHcCCC----CCCceEE
Confidence            357996644321 2469999999999999999999753       588999999999999999999653    1246789


Q ss_pred             EEeccccCCccCCceEEEeeeEEEeCCCCC---CCCCceeEEEeCCC----CCCCCCceeeeeecCCCCCCCCCCCcEEE
Q psy16044         90 AVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVA  162 (436)
Q Consensus        90 v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~---~~~~DiAll~L~~~----~~~~~~~v~pi~l~~~~~~~~~~~~~~~~  162 (436)
                      |++|.++........+.+.|+++++||+|+   ...||||||+|++|    +. ++.+++|||||... .....+..+++
T Consensus        88 V~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~~~~~v~-~~~~v~picLp~~~-~~~~~g~~~~v  165 (283)
T 1yc0_A           88 VVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT-RSQFVQPICLPEPG-STFPAGHKCQI  165 (283)
T ss_dssp             EEESCCBTTCCCSSCEEECEEEEEECTTCCTTSTTTTCCEEEEECCBTTBSSC-CBTTBCCCBCCCTT-CCCCTTCEEEE
T ss_pred             EEEeeeecccCCCceEEEeeEEEEecCccccCCCCCCceEEEEeCCCcccccc-ccCceeeeECCCCc-CCCCCCCEEEE
Confidence            999998877665667889999999999996   36799999999999    66 67889999999853 33457899999


Q ss_pred             EecCccCCCCC-ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEE
Q psy16044        163 TGWGRVKPKGD-LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT  241 (436)
Q Consensus       163 ~GwG~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~  241 (436)
                      +|||.+..... .+..|+++.+++++.+.|+..+.......+.||||+...+..+.|.|||||||++.. +++|+|+||+
T Consensus       166 ~GwG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~-~g~~~l~GIv  244 (283)
T 1yc0_A          166 AGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEK-NGVAYLYGII  244 (283)
T ss_dssp             EESSCSBTTBCSCCSBCEEEEEEBCCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEE-TTEEEEEEEE
T ss_pred             EEeCccCCCCCccCchheEeEEEEECHHHhcCccccCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEE-CCcEEEEEEE
Confidence            99998875543 467899999999999999875332234567999999876668999999999999985 7899999999


Q ss_pred             eEcCCCC--CCCcccccccceecCCccccCC
Q psy16044        242 SFGSGYC--GVGIRYSHRQPRLINGKESIRG  270 (436)
Q Consensus       242 S~g~~~C--~~~~~y~~v~~~~~~~~~~~~~  270 (436)
                      |||.+|+  +.+.+|++|.+|..||.+.+..
T Consensus       245 S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  275 (283)
T 1yc0_A          245 SWGDGCGRLHKPGVYTRVANYVDWINDRIRP  275 (283)
T ss_dssp             EECSTTTCTTCCEEEEEGGGGHHHHHHHCC-
T ss_pred             EECCCCCCCCCCeEEEEhhhHHHHHHHHhcC
Confidence            9998743  3468999999999999887764

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=2e-47  Score=347.66  Aligned_cols=233  Identities=33%  Similarity=0.565  Sum_probs=197.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCC-CCCCCcceEEEeccccCCcc-CCce
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF-SLPIPELWTAVLGDWDRTEE-EKSE  104 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~-~~~~~~~~~v~~g~~~~~~~-~~~~  104 (436)
                      |+||++|.+++|||+|+|+....     .++|+||||+++||||||||+.+... .......+.|++|..+.... ....
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-----~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~   75 (241)
T 3ncl_A            1 VVGGTDADEGEWPWQVSLHALGQ-----GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGV   75 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTT-----EEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTC
T ss_pred             CCCCeECCCCCCCcEEEEEcCCC-----ceEEEEEEeeCCEEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCc
Confidence            78999999999999999976431     48899999999999999999966421 22235678999998876654 3345


Q ss_pred             EEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        105 VRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       105 ~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.+.|+++++||+|+  ...||||||||++|+. ++..++|||||... .....+..++++|||.+...+..+..|++..
T Consensus        76 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~-~~~~v~piclp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  153 (241)
T 3ncl_A           76 QERRLKRIISHPFFNDFTFDYDIALLELEKPAE-YSSMVRPISLPDAS-HVFPAGKAIWVTGWGHTQYGGTGALILQKGE  153 (241)
T ss_dssp             EEEEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CCSSCCCCBCCCTT-CCCCTTCEEEEEESSBSSTTSCBCSBCEEEE
T ss_pred             eEEEEEEEEECCCCCCCCCCCcEEEEEECCCCc-ccCccCceEcCCcc-cCCCCCCEEEEEEecccCCCCCcCceeeEEe
Confidence            888999999999998  4679999999999999 78889999999863 3345789999999999987777778899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccce
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPR  260 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~  260 (436)
                      +++++.+.|+..+..  ...+.|+|++...+..++|.|||||||++...+++|+|+||+|||.+||.  .+.+|++|..|
T Consensus       154 ~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y  231 (241)
T 3ncl_A          154 IRVINQTTCENLLPQ--QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLF  231 (241)
T ss_dssp             EEECCHHHHHHHSTT--TCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGG
T ss_pred             EEEECHHHhhhhccc--CCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECCCCCCCCCCeEEEEHHHH
Confidence            999999999998764  34569999998777789999999999998877899999999999988553  46799999999


Q ss_pred             ecCCcccc
Q psy16044        261 LINGKESI  268 (436)
Q Consensus       261 ~~~~~~~~  268 (436)
                      ..||.+.+
T Consensus       232 ~~WI~~~~  239 (241)
T 3ncl_A          232 RDWIKENT  239 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998754

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=3e-47  Score=341.54  Aligned_cols=219  Identities=34%  Similarity=0.672  Sum_probs=181.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+.     +  .++|+||||+++||||||||+..         .+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-----~--~~~CgGsLIs~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~~~   64 (222)
T 1hj8_A            1 IVGGYECKAYSQPHQVSLNS-----G--YHFCGGSLVNENWVVSAAHCYKS---------RVEVRLGEHNIKVTEGSEQF   64 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEES-----S--SEEEEEEEEETTEEEECGGGCCS---------SCEEEESCSBTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCEEEEEEc-----C--CcEEEeEEecCCEEEECHHhcCC---------CeEEEEcccccccCCCCcEE
Confidence            68999999999999999963     1  68999999999999999999852         35799999887655556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++..++|||||...   ...+..++++|||.+                
T Consensus        65 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picL~~~~---~~~~~~~~v~GwG~~----------------  124 (222)
T 1hj8_A           65 ISSSRVIRHPNYSSYNIDNDIMLIKLSKPAT-LNTYVQPVALPTSC---APAGTMCTVSGWGNT----------------  124 (222)
T ss_dssp             EEEEEEEECTTCBTTTTBSCCEEEEESSCCC-CSSSCCCCBCCSSC---CCTTCEEEEEESSCC----------------
T ss_pred             EEEEEEEECCCCCCCCCCCcEEEEEECCccc-CCCceeccCCCCCC---CCCCCEEEEEECCCC----------------
Confidence            8999999999997  4689999999999999 67789999998642   234556666666632                


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       125 --------------------------------------------------------------------------------  124 (222)
T 1hj8_A          125 --------------------------------------------------------------------------------  124 (222)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                     ......+..|+++.+++
T Consensus       125 ---------------------------------------------------------------~~~~~~~~~L~~~~~~~  141 (222)
T 1hj8_A          125 ---------------------------------------------------------------MSSTADSNKLQCLNIPI  141 (222)
T ss_dssp             ---------------------------------------------------------------CCSSCCTTBCEEEEEEB
T ss_pred             ---------------------------------------------------------------CCCCCCCceeEEEEEEE
Confidence                                                                           22222245688999999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.++|+..+..  .+.+.|||++...+..+.|.|||||||+++   +  +|+||+|||.+|+..+.|++||||+.|++|
T Consensus       142 ~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~~C~~~~~p~vyt~v~~~~~W  214 (222)
T 1hj8_A          142 LSYSDCNNSYPG--MITNAMFCAGYLEGGKDSCQGDSGGPVVCN---G--ELQGVVSWGYGCAEPGNPGVYAKVCIFNDW  214 (222)
T ss_dssp             CCHHHHHHHSTT--CCCTTEEEESCTTSSCBCCTTCTTCEEEET---T--EEEEEEEECSSSSCTTCCEEEEEGGGGHHH
T ss_pred             cCHHHhhhhccC--CCCCCeEEeccCCCCCccCCCCcccceEEC---C--EEEEEEeecCCCCCCCcCcEEEEhHHhHHH
Confidence            999999988765  468999999876666789999999999984   2  599999999999877789999999999999


Q ss_pred             HHHHHhh
Q psy16044        425 IRKQINI  431 (436)
Q Consensus       425 I~~~i~~  431 (436)
                      |+++|+.
T Consensus       215 I~~~~~~  221 (222)
T 1hj8_A          215 LTSTMAS  221 (222)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhc
Confidence            9999864

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=1.1e-47  Score=349.04  Aligned_cols=233  Identities=33%  Similarity=0.620  Sum_probs=195.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+.....   ..++|+||||+++||||||||+....    .+..+.|++|...........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~---~~~~CgGtLI~~~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~~   73 (241)
T 2any_A            1 IVGGTESSWGEWPWQVSLQVKLTA---QRHLCGGSLIGHQWVLTAAHCFDGLP----LQDVWRIYSGILELSDITKDTPF   73 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSS---EEEEEEEEEEETTEEEECGGGGSSCC----CSTTEEEECSCSBGGGCCTTSCC
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCC---CceEEEEEEecCCEEEECHHHcCCCC----CCccEEEEeeeeeccccccCceE
Confidence            689999999999999999875311   26899999999999999999996531    23567899998776554445567


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||+|++|+. ++.+++|||||.... ....+..|+++|||.+...+..+..|+++.++
T Consensus        74 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~  151 (241)
T 2any_A           74 SQIKEIIIHQNYKVSEGNHDIALIKLQAPLE-YTEFQKPISLPSKGD-TSTIYTNCWVTGWGFSKEKGEIQNILQKVNIP  151 (241)
T ss_dssp             BCEEEEEECTTCCTTSSSSCCEEEEESSCCC-CBTTBCCCCCCCSSC-CSTTCSEEEEEESSCSSTTCCCCSBCEEEEEE
T ss_pred             EeeEEEEECCCCCCCCCCCCeEEEEeCCccc-CCCCcceeEcCCccc-CCCCCCeEEEEecccCCCCCCcCchhheeEeE
Confidence            7899999999997  4679999999999999 788899999998533 34578899999999988766667889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccceec
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPRLI  262 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~~~  262 (436)
                      +++.+.|+..+... ...+.|||++...+..++|.|||||||++.. +++|+|+||+|||.+|+.  .+.+|++|..|..
T Consensus       152 ~~~~~~C~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~  229 (241)
T 2any_A          152 LVTNEECQKRYQDY-KITQRMVCAGYKEGGKDACKGDSGGPLVCKH-NGMWRLVGITSWGEGCARREQPGVYTKVAEYMD  229 (241)
T ss_dssp             EECHHHHHTTSCTT-CSCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHH
T ss_pred             EeCHHHhhhHhccC-CCCcCcEeecCCCCCCccCCCCCCCcEEEEE-CCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHH
Confidence            99999999887542 3567999998776668999999999999984 789999999999998543  4679999999999


Q ss_pred             CCccccCC
Q psy16044        263 NGKESIRG  270 (436)
Q Consensus       263 ~~~~~~~~  270 (436)
                      ||.+.+..
T Consensus       230 WI~~~~~~  237 (241)
T 2any_A          230 WILEKTQS  237 (241)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhhc
Confidence            99877653

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=2.2e-47  Score=345.98  Aligned_cols=229  Identities=28%  Similarity=0.581  Sum_probs=194.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc-CCceE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE-EKSEV  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~-~~~~~  105 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+.+..   ..+..+.|++|....... ....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLI~~~~VLTAAHC~~~~~---~~~~~~~v~~g~~~~~~~~~~~~~   71 (235)
T 4dgj_A            1 IVGGSDAKEGAWPWVVGLYYDD------RLLCGASLVSSDWLVSAAHCVYGRN---LEPSKWTAILGLHMKSNLTSPQTV   71 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEECSSSEEEECHHHHTTSC---SSGGGEEEEESCCBTTCCSCTTCE
T ss_pred             CCCCccCCCCCCCcEEEEeeCC------CeEEEEEEeeCCEEEECHHhcCCCC---CCCccEEEEEeeecccccCCCcee
Confidence            6899999999999999998743      6899999999999999999996532   235678899998765432 33456


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      .+.|+++++||+|+  ...||||||||++|+. ++..++|||||... .....+..++++|||.+...+..+..|++..+
T Consensus        72 ~~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~  149 (235)
T 4dgj_A           72 PRLIDEIVINPHYNRRRKDNDIAMMHLEFKVN-YTDYIQPISLPEEN-QVFPPGRNCSIAGWGTVVYQGTTADILQEADV  149 (235)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCC-CBTTBCCCBCCCTT-CCCCTTCEEEEEESSBSSTTCCBCSBCEEEEE
T ss_pred             EEeEEEEEECCCCCCCCCCCeEEEEEECCccc-cCCcccccCCCCcc-cCCCCCCEEEEEecccCCCCCccchhheEeEe
Confidence            77899999999997  4679999999999999 78889999999863 33457899999999998877777888999999


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCccccccccee
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGIRYSHRQPRL  261 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~~y~~v~~~~  261 (436)
                      ++++.+.|+..+.. ...++.||||+...+..+.|.|||||||++.. +++|+|+||+|||.+|+  +.+.+|++|.+|.
T Consensus       150 ~~~~~~~C~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~  227 (235)
T 4dgj_A          150 PLLSNERCQQQMPE-YNITENMICAGYEEGGIDSCQGDSGGPLMCQE-NNRWFLAGVTSFGYECALPNRPGVYARVSRFT  227 (235)
T ss_dssp             EEECHHHHHHHCTT-SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGTH
T ss_pred             eecCHHHhhhhccC-ccCCCCeEeecCCCCCCccCCCCCCCeEEEEE-CCcEEEEEEEEEcCCCCCCCCCEEEeeHHHHH
Confidence            99999999998754 24567999999877778999999999999984 78999999999998855  3468999999999


Q ss_pred             cCCcccc
Q psy16044        262 INGKESI  268 (436)
Q Consensus       262 ~~~~~~~  268 (436)
                      .||++.+
T Consensus       228 ~WI~~~i  234 (235)
T 4dgj_A          228 EWIQSFL  234 (235)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHh
Confidence            9998765

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=1.4e-47  Score=347.98  Aligned_cols=230  Identities=27%  Similarity=0.525  Sum_probs=194.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.+|.+++|||+|+|+....    ..++|+||||+++||||||||+...     .+..+.|++|.++........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~----~~~~CgGtLIs~~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~   71 (238)
T 1ym0_A            1 IVGGIEARPYEFPWQVSVRRKSS----DSHFCGGSIINDRWVVCAAHCMQGE-----APALVSLVVGEHDSSAASTVRQT   71 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEEGGG----TEEEEEEEEEETTEEEECHHHHTTC-----CGGGEEEEESCSBTTSCCSSCEE
T ss_pred             CCCCEECCCCccCCEEEEEeCCC----CceEEEEEEeeCCEEEECHHhCCCC-----CCceEEEEEcccccCCCCCCceE
Confidence            68999999999999999987531    2689999999999999999999663     34678999999887766556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCc-cccceeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRV  183 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~-~~~l~~~~~  183 (436)
                      +.|+++++||+|+  ...+|||||||++|+. ++..++|||||..... . .+..++++|||.+...+.. +..|++..+
T Consensus        72 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picLp~~~~~-~-~~~~~~~~GwG~~~~~~~~~~~~l~~~~~  148 (238)
T 1ym0_A           72 HDVDSIFVNENYDPATLENDVSVIKTAVAIT-FDINVGPICAPDPAND-Y-VYRKSQCSGWGTINSGGVCCPAVLRYVTL  148 (238)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CSSSCCCCBCCCTTCC-C-TTCEEEEEESCCSSTTCCSCCSBCEEEEE
T ss_pred             EEEEEEEECCCCCCCCCcccEEEEEeCCCcc-ccCcccccCCCCCcCC-C-CCCceEEEeecCCCCCCCcCCccceEEEE
Confidence            9999999999998  4689999999999999 7888999999985432 2 6789999999998766554 678999999


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCC--CCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC-CCCcccccccce
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGF--SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-GVGIRYSHRQPR  260 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~--~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C-~~~~~y~~v~~~  260 (436)
                      ++++.+.|+..+... ...+.|||++...+.  .+.|.|||||||++...+++|+|+||+|||.+|. +.+.+|++|..|
T Consensus       149 ~~~~~~~C~~~~~~~-~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~~~~p~vyt~v~~~  227 (238)
T 1ym0_A          149 NITTNAFCDAVYTSD-TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASGYPGVYSRVGFH  227 (238)
T ss_dssp             EECCHHHHHHHCTTS-CCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSSSSSSSCEEEEEHHHH
T ss_pred             EeeCHHHHhHhhccc-ccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCCCCCCCCcEEEEHHHh
Confidence            999999999887542 356799999876554  7899999999999986578999999999998733 346799999999


Q ss_pred             ecCCccccC
Q psy16044        261 LINGKESIR  269 (436)
Q Consensus       261 ~~~~~~~~~  269 (436)
                      ..||.+.+.
T Consensus       228 ~~WI~~~i~  236 (238)
T 1ym0_A          228 AGWITDTIT  236 (238)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999987653

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=5e-47  Score=340.29  Aligned_cols=219  Identities=32%  Similarity=0.607  Sum_probs=179.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+..+      .++|+||||+++||||||||+..         .+.|++|.++........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~~~   65 (223)
T 1lo6_A            1 LVHGGPCDKTSHPYQAALYTSG------HLLCGGVLIHPLWVLTAAHCKKP---------NLQVFLGKHNLRQRESSQEQ   65 (223)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEEEETTEEEECGGGCCT---------TCEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEecCC------CEEEEeEEecCCEEEECccCCCC---------CeEEEEcceecCCCCCCcEE
Confidence            6899999999999999997532      68999999999999999999742         36899999887665556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|.++++||+|+  ...||||||||++|+. ++..++|||||...   ...+..++++|||                  
T Consensus        66 ~~v~~i~~Hp~y~~~~~~~DIAll~L~~~~~-~~~~v~pi~l~~~~---~~~~~~~~v~GwG------------------  123 (223)
T 1lo6_A           66 SSVVRAVIHPDYDAASHDQDIMLLRLARPAK-LSELIQPLPLERDC---SANTTSCHILGWG------------------  123 (223)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCCBCCCT---TCCCCEEEEEESS------------------
T ss_pred             EEEEEEEECCCCCCCCCcCeEEEEEECCccc-CCCceeecccCCCC---CCCCCEEEEEEEC------------------
Confidence            8999999999997  4689999999999998 67788999987642   1234555555555                  


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (223)
T 1lo6_A          124 --------------------------------------------------------------------------------  123 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                   .+. ....+..|+++.+++
T Consensus       124 -------------------------------------------------------------~~~-~~~~~~~l~~~~~~~  141 (223)
T 1lo6_A          124 -------------------------------------------------------------KTA-DGDFPDTIQCAYIHL  141 (223)
T ss_dssp             -------------------------------------------------------------CCT-TSSCCSBCEEEEEEE
T ss_pred             -------------------------------------------------------------CCC-CCCcCceeeEEEEEE
Confidence                                                                         332 222355688999999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~~  423 (436)
                      ++.++|+..+..  .++++|||++......+.|.|||||||+++   +  +|+||+||| ..|+..+.|++||||+.|++
T Consensus       142 ~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~---~--~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~  214 (223)
T 1lo6_A          142 VSREECEHAYPG--QITQNMLCAGDEKYGKDSCQGDSGGPLVCG---D--HLRGLVSWGNIPCGSKEKPGVYTNVCRYTN  214 (223)
T ss_dssp             ECHHHHHHHSTT--TCCTTEEEEECTTTCCBCCTTTTTCEEEET---T--EEEEEEEECCSSCCCSSSCEEEEEGGGGHH
T ss_pred             eCHHHhhhhhCC--CCCCCeEEeecCCCCCeeccccCCCcEEeC---C--EEEEEEeeCCCCCCCCCCCcEEEEHHHHHH
Confidence            999999988765  468999999876656789999999999994   2  599999999 68987778999999999999


Q ss_pred             HHHHHHhh
Q psy16044        424 WIRKQINI  431 (436)
Q Consensus       424 WI~~~i~~  431 (436)
                      ||+++|+.
T Consensus       215 WI~~~i~~  222 (223)
T 1lo6_A          215 WIQKTIQA  222 (223)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhcc
Confidence            99999975

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=5.2e-47  Score=340.16  Aligned_cols=220  Identities=35%  Similarity=0.667  Sum_probs=181.4

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.+|.+++|||+|+|+ ..      .++|+||||+++||||||||+.         ..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-~~------~~~CgGsLIs~~~VLTAAHC~~---------~~~~v~~G~~~~~~~~~~~~~   64 (223)
T 3mfj_A            1 IVGGYTCGANTVPYQVSLN-SG------YHFCGGSLINSQWVVSAAHCYK---------SGIQVRLGEDNINVVEGNEQF   64 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SS------SEEEEEEEEETTEEEECGGGCC---------SSCEEEESCSSTTSCCSCCEE
T ss_pred             CCCCEECCCCcCCEEEEEE-cC------CeEEEEEEecCCEEEEhHHhcC---------CCcEEEECCceecccCCCcEE
Confidence            6899999999999999994 21      6899999999999999999983         246799999877655556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|.++++||+|+  ...||||||||++|+. ++.+++|||||...   ...+..++++|||.+..              
T Consensus        65 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picL~~~~---~~~~~~~~v~GwG~~~~--------------  126 (223)
T 3mfj_A           65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAAS-LNSRVASISLPTSC---ASAGTQCLISGWGNTKS--------------  126 (223)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCBCCSSC---CCTTCEEEEEESSCCCS--------------
T ss_pred             EEeeEEEECCCCCCCCCCCCEEEEEeCCCcc-cCCcEeeeECCCCC---CCCCCEEEEEeeeccCC--------------
Confidence            8999999999997  4689999999999999 67789999998742   23456667777764320              


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (223)
T 3mfj_A          127 --------------------------------------------------------------------------------  126 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                      .....+..|+++.+++
T Consensus       127 ----------------------------------------------------------------~~~~~~~~L~~~~~~~  142 (223)
T 3mfj_A          127 ----------------------------------------------------------------SGTSYPDVLKCLKAPI  142 (223)
T ss_dssp             ----------------------------------------------------------------SSCCCCSSCEEEEEEB
T ss_pred             ----------------------------------------------------------------CCCcccchheEEEEEE
Confidence                                                                            0111245688999999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.++|+..+..  .+.++|||++...+..+.|.|||||||+++   +  .|+||+|||.+|+..+.|++||||++|++|
T Consensus       143 ~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~C~~~~~p~vyt~V~~~~~W  215 (223)
T 3mfj_A          143 LSDSSCKSAYPG--QITSNMFCAGYLEGGKDSCQGDSGGPVVCS---G--KLQGIVSWGSGCAQKNKPGVYTKVCNYVSW  215 (223)
T ss_dssp             CCHHHHHHHSTT--TCCTTEEEESCTTSSCBCCTTCTTCEEEET---T--EEEEEEEECSSSSBTTBCEEEEEGGGGHHH
T ss_pred             eCHHHhhhhhcC--cCCCCEEEccCCCCCCCcCCCCcccceEEC---C--EEEEEEEECCCCCCCCCCeEEEEHHHhHHH
Confidence            999999988754  468999999876666789999999999994   2  499999999999877789999999999999


Q ss_pred             HHHHHhh
Q psy16044        425 IRKQINI  431 (436)
Q Consensus       425 I~~~i~~  431 (436)
                      |+++|+.
T Consensus       216 I~~~i~~  222 (223)
T 3mfj_A          216 IKQTIAS  222 (223)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999975

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=2.2e-47  Score=367.73  Aligned_cols=244  Identities=30%  Similarity=0.571  Sum_probs=197.2

Q ss_pred             CCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEE
Q psy16044         12 RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAV   91 (436)
Q Consensus        12 ~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~   91 (436)
                      ..||++.   ....||+||.+|..++|||+|+|+...      .++|+||||+++||||||||+....   .....+.|+
T Consensus       106 ~~Cg~~~---~~~~rIvgG~~a~~~~~Pw~v~l~~~~------~~~CgGsLIs~~~VLTAAHCv~~~~---~~~~~~~V~  173 (372)
T 1z8g_A          106 QDCGRRK---LPVDRIVGGRDTSLGRWPWQVSLRYDG------AHLCGGSLLSGDWVLTAAHCFPERN---RVLSRWRVF  173 (372)
T ss_dssp             CCCSCCC---CC---CBSCEECCTTSSTTEEEEEETT------EEEEEEEESSSSEEEECGGGCCGGG---CCGGGEEEE
T ss_pred             cccCCcC---CCCCceECCEECCCCCCCcEEEEEeCC------ceEEEEEEecCCEEEEChhhcCCCC---CccceEEEE
Confidence            3578542   245799999999999999999998642      6899999999999999999995321   134668999


Q ss_pred             eccccCCccCCceEEEeeeEEEeCCCC------C--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEE
Q psy16044         92 LGDWDRTEEEKSEVRIPVERIRVHEEF------H--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVAT  163 (436)
Q Consensus        92 ~g~~~~~~~~~~~~~~~v~~i~~hp~y------~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~  163 (436)
                      +|..+....  ..+.+.|+++++||+|      +  ...||||||||++|+. ++.+++|||||... ..+..+..|+++
T Consensus       174 ~G~~~~~~~--~~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~-~~~~v~PicLp~~~-~~~~~g~~~~v~  249 (372)
T 1z8g_A          174 AGAVAQASP--HGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLP-LTEYIQPVCLPAAG-QALVDGKICTVT  249 (372)
T ss_dssp             ESCSBTTCT--TSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCC-CCSSCCCCBCCCTT-CCCCTTCEEEEE
T ss_pred             EeeEeccCC--CCcEEEEEEEEECCCccccccCCCCCCCccEEEEEECCCCC-CCCceeccccCCcc-cCCCCCCEEEEE
Confidence            998766543  2356899999999999      4  4679999999999999 78889999999853 334568899999


Q ss_pred             ecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEec---CCcEEEEEE
Q psy16044        164 GWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK---DGRWYLAGI  240 (436)
Q Consensus       164 GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~---~~~~~l~GI  240 (436)
                      |||.+...+..+..|+++.+++++.+.|+.........++.||||+...+..++|+|||||||++...   +++|+|+||
T Consensus       250 GWG~t~~~~~~~~~L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGI  329 (372)
T 1z8g_A          250 GWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGI  329 (372)
T ss_dssp             ESSBSSTTSCBCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEE
T ss_pred             ecCCCCCCCCCCceeeEEEEEecChHHhCcchhcCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEE
Confidence            99999876677788999999999999998753222345679999998777789999999999999753   388999999


Q ss_pred             EeEcCCCC--CCCcccccccceecCCccccCCC
Q psy16044        241 TSFGSGYC--GVGIRYSHRQPRLINGKESIRGA  271 (436)
Q Consensus       241 ~S~g~~~C--~~~~~y~~v~~~~~~~~~~~~~~  271 (436)
                      +|||.+|+  +.+.+|++|..|..||.+.+...
T Consensus       330 vS~G~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  362 (372)
T 1z8g_A          330 VSWGTGCALAQKPGVYTKVSDFREWIFQAIKTH  362 (372)
T ss_dssp             EEEBSSSSCTTCCEEEEEGGGGHHHHHHHHHHT
T ss_pred             EEeCCCCCCCCCCeEEEEHHHHHHHHHHHHhcc
Confidence            99998743  24689999999999998877543

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=3.1e-47  Score=348.63  Aligned_cols=235  Identities=31%  Similarity=0.503  Sum_probs=191.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||..|..++|||+|+|+..........++|+||||+++||||||||+...    ..+..+.|++|...........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~----~~~~~~~V~~G~~~~~~~~~~~~~   76 (252)
T 1rtf_B            1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQER----FPPHHLTVILGRTYRVVPGEEEQK   76 (252)
T ss_dssp             CBSSEECCGGGSTTEEEEEEEC----CEEEEEEEEECSSSEEEECGGGGTTC----CCGGGEEEEESCSBSSSCCTTCEE
T ss_pred             CCCCeECCCCCcCCEEEEEEecCCCCCCCEEEEEEEEeCCEEEECHHHCCCC----CCcccEEEEeCcccccCCCCcceE
Confidence            6899999999999999998754222222689999999999999999999653    134678999998877665556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCC----CCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCC-Cccccce
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLR  179 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~----~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~-~~~~~l~  179 (436)
                      +.|+++++||+|+  ...||||||+|++|    +. ++..++|||||... .....+..++++|||.+.... ..+..|+
T Consensus        77 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L~  154 (252)
T 1rtf_B           77 FEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQ-ESSVVRTVCLPPAD-LQLPDWTECELSGYGKHEALSPFYSERLK  154 (252)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEECCSSSCCSC-CBTTBCCCBCCCTT-CCCCTTCEEEEEESCCSSTTCSSCCSBCE
T ss_pred             EEEEEEEeCCCCCcCCCCCCEEEEEECCccccccc-cCCceeceeCCCcc-ccCCCCCEEEEEEcCCCCCCCccccchhe
Confidence            9999999999997  46899999999999    77 67889999999853 334567899999999887544 3467899


Q ss_pred             eeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCC------CCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CC
Q psy16044        180 QIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF------SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VG  251 (436)
Q Consensus       180 ~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~------~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~  251 (436)
                      +..+++++.+.|+..+.......+.|||++...+.      .++|.|||||||++.. +++|+|+||+|||.+|+.  .+
T Consensus       155 ~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p  233 (252)
T 1rtf_B          155 EAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLN-DGRMTLVGIISWGLGCGQKDVP  233 (252)
T ss_dssp             EEEEEECCGGGSSTTTTTTCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCC
T ss_pred             EeeeEEecHHHhhhhhccCCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEe-CCcEEEEEEEEEcCCCCCCCCC
Confidence            99999999999998764444566799999876544      7899999999999974 789999999999987432  36


Q ss_pred             cccccccceecCCcccc
Q psy16044        252 IRYSHRQPRLINGKESI  268 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~  268 (436)
                      .+|++|..|..||.+.+
T Consensus       234 ~vyt~V~~y~~WI~~~~  250 (252)
T 1rtf_B          234 GVYTKVTNYLDWIRDNM  250 (252)
T ss_dssp             EEEEEGGGGHHHHHHHC
T ss_pred             eEEEEHHHHHHHHHHhc
Confidence            79999999999998765

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=2.5e-48  Score=368.08  Aligned_cols=244  Identities=25%  Similarity=0.427  Sum_probs=192.6

Q ss_pred             CCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEE
Q psy16044         12 RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAV   91 (436)
Q Consensus        12 ~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~   91 (436)
                      +.||+.........||+||++|..++|||+|+|..        .++|+||||+++||||||||+............+.|+
T Consensus        75 ~~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~--------~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~V~  146 (329)
T 1md8_A           75 PVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVF  146 (329)
T ss_dssp             ECCSCCSSCCCCC--CBSCCBCCTTSCTTEEEEES--------SSEEEEEEETTTEEEECGGGTSCTTC-----CCCCEE
T ss_pred             CCCCCCCCcccccccccCCEECCCCCCCCeEeecc--------CCCcceEEecCCEEEecCCEEEeCCcccCCCceEEEE
Confidence            46997655555678999999999999999999864        3469999999999999999997432222234567899


Q ss_pred             eccccCCccCCceEEEeeeEEEeCCCCC-----CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecC
Q psy16044         92 LGDWDRTEEEKSEVRIPVERIRVHEEFH-----NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWG  166 (436)
Q Consensus        92 ~g~~~~~~~~~~~~~~~v~~i~~hp~y~-----~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG  166 (436)
                      +|..+..... ..+.+.|+++++||+|+     ...||||||||++|+. ++.+++|||||... .....+..++++|||
T Consensus       147 ~G~~~~~~~~-~~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~-~~~~v~PicLp~~~-~~~~~g~~~~v~GWG  223 (329)
T 1md8_A          147 LGHTNVEELM-KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVT-LGPNLLPICLPDND-TFYDLGLMGYVSGFG  223 (329)
T ss_dssp             ESCSBHHHHH-HHCCCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCC-CBTTBCCCBCCCSG-GGGCTTCEEEEEECC
T ss_pred             eccccccccc-cccceeeEEEEECCCcccccCCCCCccEEEEEECCccc-CCCceEccccCCCc-cccCCCCEEEEEeCC
Confidence            9987543211 12356799999999997     3578999999999999 78889999999753 223467899999999


Q ss_pred             ccCCCCCccccceeeeeeccchhhhhhhcCC---CcCCcCCeEEeccCCCCCCCccCCCCCeeeeEe-cCCcEEEEEEEe
Q psy16044        167 RVKPKGDLVSKLRQIRVPLHNISVCRDKYGD---SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITS  242 (436)
Q Consensus       167 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~---~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~~l~GI~S  242 (436)
                      .+...  .+..|+++.+++++.+.|+..+..   ....+++||||+...+..++|.|||||||++.. .+++|+|+||+|
T Consensus       224 ~t~~~--~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~~l~GIvS  301 (329)
T 1md8_A          224 VMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVS  301 (329)
T ss_dssp             BCSSS--BCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCC--CCccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcEEEEEEEE
Confidence            88643  567899999999999999987632   123567999999876668999999999999963 467999999999


Q ss_pred             EcCCCCCCCcccccccceecCCcccc
Q psy16044        243 FGSGYCGVGIRYSHRQPRLINGKESI  268 (436)
Q Consensus       243 ~g~~~C~~~~~y~~v~~~~~~~~~~~  268 (436)
                      ||.+|...+.+|++|..|..||.+.+
T Consensus       302 ~G~~C~~~~gvyT~V~~y~~WI~~~i  327 (329)
T 1md8_A          302 WGIGCSRGYGFYTKVLNYVDWIKKEM  327 (329)
T ss_dssp             ECSSSSSSCEEEEEGGGTHHHHHHHH
T ss_pred             ECCCcCCCCcEEEEHHHHHHHHHHHH
Confidence            99984445789999999999998754

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=1.3e-47  Score=351.46  Aligned_cols=232  Identities=30%  Similarity=0.525  Sum_probs=195.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+...      .++|+||||+++||||||||+....    ....+.|++|.++........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~~   70 (254)
T 2bz6_H            1 IVGGKVCPKGECPWQVLLLVNG------AQLCGGTLINTIWVVSAAHCFDKIK----NWRNLIAVLGEHDLSEHDGDEQS   70 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEECSSSEEEECGGGGTTCS----CGGGEEEEESCCBTTCCCSCCEE
T ss_pred             CCCCEECCCCCcCCEEEEEeCC------CcEEEEEEecCCEEEECHHHcCCCC----CcceEEEEECCcccCCCCCCcEE
Confidence            7899999999999999998432      6899999999999999999997531    23568999999887766556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCC--CCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKR--PVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~--~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.|.++++||+|+  ...||||||||++|+. ++.+++|||||.....  ....+..++++|||.+...+..+..|++..
T Consensus        71 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  149 (254)
T 2bz6_H           71 RRVAQVIIPSTYVPGTTNHDIALLRLHQPVV-LTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLN  149 (254)
T ss_dssp             EEEEEEEEETTCCTTSCSSCCEEEEESSCCC-CBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEE
T ss_pred             EEEEEEEECCCCCCCCCcCcEEEEEECCccc-cCCCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeee
Confidence            9999999999997  4689999999999999 7888999999974211  234578899999999887666778899999


Q ss_pred             eeccchhhhhhhcCCC---cCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCcccccc
Q psy16044        183 VPLHNISVCRDKYGDS---VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGIRYSHR  257 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~~y~~v  257 (436)
                      +.+++.++|...+...   ....+.||||+...+..++|.|||||||++. .+++|+|+||+|||.+|+  +.+.+|++|
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~-~~g~~~l~GI~S~g~~C~~~~~p~vyt~V  228 (254)
T 2bz6_H          150 VPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQGCATVGHFGVYTRV  228 (254)
T ss_dssp             EEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEG
T ss_pred             eeeecHHHHhhhhhccccCCccCCCEEeecCCCCCCccccccCCCceEEe-ECCEEEEEEEEEECCCCCCCCCCeEEEEH
Confidence            9999999999887542   2456799999877666899999999999997 478999999999998844  246799999


Q ss_pred             cceecCCccccCC
Q psy16044        258 QPRLINGKESIRG  270 (436)
Q Consensus       258 ~~~~~~~~~~~~~  270 (436)
                      ..|..||.+.+..
T Consensus       229 ~~~~~WI~~~~~~  241 (254)
T 2bz6_H          229 SQYIEWLQKLMRS  241 (254)
T ss_dssp             GGGHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987764

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=9.7e-47  Score=341.98  Aligned_cols=221  Identities=34%  Similarity=0.613  Sum_probs=172.3

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...         ..|++|...........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGsLIs~~~VLTAAHC~~~~---------~~v~~G~~~~~~~~~~~~~   65 (237)
T 2zch_P            1 IVGGWECEKHSQPWQVLVASRG------RAVCGGVLVHPQWVLTAAHCIRNK---------SVILLGRHSLFHPEDTGQV   65 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEESSS------SEEEEEEEEETTEEEECGGGCCSS---------CEEEESCSBSSSCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEeeCC------CeEEEEEEecCCEEEEcHHhcCCC---------ceEEEecccccCCCCCcEE
Confidence            7899999999999999997542      689999999999999999998642         3688998877665556688


Q ss_pred             EeeeEEEeCCCCCC--C-----------CCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC
Q psy16044        107 IPVERIRVHEEFHN--Y-----------HHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD  173 (436)
Q Consensus       107 ~~v~~i~~hp~y~~--~-----------~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~  173 (436)
                      +.|+++++||+|+.  .           .+|||||||++|+. ++..++|||||...   .                   
T Consensus        66 ~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~-~~~~v~pi~Lp~~~---~-------------------  122 (237)
T 2zch_P           66 FQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAE-LTDAVKVMDLPTQE---P-------------------  122 (237)
T ss_dssp             EEEEEEEECTTSCGGGGTSSSCCTTCBCTTCCEEEEESSCCC-CCSSCCCCCCCSSC---C-------------------
T ss_pred             EEEEEEecCCCcchhhhcccccccCCCCCcceEEEEeCCCCc-cCCcEeeeECCCCC---C-------------------
Confidence            99999999999963  1           45666666666665 44555666665421   1                   


Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcc
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR  253 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~  253 (436)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (237)
T 2zch_P          123 --------------------------------------------------------------------------------  122 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCC-
Q psy16044        254 YSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-  332 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~-  332 (436)
                                                                                  ..++.|+++|||.+..... 
T Consensus       123 ------------------------------------------------------------~~~~~~~v~GwG~~~~~~~~  142 (237)
T 2zch_P          123 ------------------------------------------------------------ALGTTCYASGWGSIEPEEFL  142 (237)
T ss_dssp             ------------------------------------------------------------CTTCEEEEEESCCSSSSSCC
T ss_pred             ------------------------------------------------------------CCCCEEEEEeCCccCCCCCc
Confidence                                                                        2334455555554433222 


Q ss_pred             ccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCC
Q psy16044        333 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGY  411 (436)
Q Consensus       333 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~  411 (436)
                      .+..|+++.+++++.++|++.+..  .+++.|||++...+..+.|.|||||||+++.     +|+||+|||. +|+..+.
T Consensus       143 ~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~  215 (237)
T 2zch_P          143 TPKKLQCVDLHVISNDVCAQVHPQ--KVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG-----VLQGITSWGSEPCALPER  215 (237)
T ss_dssp             CCSBCEEEEEEEECHHHHHHHCSS--BCCTTEEEEECTTCSCBCCTTCTTCEEESSS-----SEEEEEEECCSSTTCTTC
T ss_pred             CCcccEEeEEEEeCHHHhcccccC--CCCceEEeecCCCCCCcccCCCccCeEEECC-----EEEEEEEeCcCCCCCCCC
Confidence            256789999999999999988754  4688999998766667999999999999953     5999999998 7987778


Q ss_pred             CeEEEeCcccHHHHHHHHhhh
Q psy16044        412 PDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       412 p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      |++||||++|++||+++|+.+
T Consensus       216 p~vyt~V~~~~~WI~~~i~~~  236 (237)
T 2zch_P          216 PSLYTKVVHYRKWIKDTIVAN  236 (237)
T ss_dssp             CEEEEEGGGGHHHHHHHHHTC
T ss_pred             CcEEEEHHHHHHHHHHHHhcC
Confidence            999999999999999999753

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=5.3e-47  Score=349.06  Aligned_cols=230  Identities=31%  Similarity=0.604  Sum_probs=195.4

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+...      .++|+||||+++||||||||+...    .....+.|++|...........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLI~~~~VLTAAhC~~~~----~~~~~~~v~~g~~~~~~~~~~~~~   70 (261)
T 3gyl_B            1 ITGGSSAVAGQWPWQVSITYEG------VHVCGGSLVSEQWVLSAAHCFPSE----HHKEAYEVKLGAHQLDSYSEDAKV   70 (261)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEECSSSEEEECGGGSCTT----SCGGGEEEEESCSBTTSCCSSCEE
T ss_pred             CCCCcCCCCCCCCcEEEEeeCC------ceEEEEEEEcCCEEEECHHHCCCC----CCcccEEEEeCceeccCCCCCceE
Confidence            7899999999999999998643      689999999999999999999643    234668999999888776666788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCc--cccceeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL--VSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~--~~~l~~~~  182 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++.+++|||||... .....+..|+++|||.+......  +..|+++.
T Consensus        71 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~  148 (261)
T 3gyl_B           71 STLKDIIPHPSYLQEGSQGDIALLQLSRPIT-FSRYIRPISLPAAQ-ASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLE  148 (261)
T ss_dssp             ECEEEEEECTTCCSTTCSCCCEEEEESSCCC-CBTTBCCCBCCCTT-CCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEE
T ss_pred             EEEEEEEECCCcCCCCCCCcEEEEEECCCcc-CCCceeccCCCCcc-cCCCCCCEEEEEecCCCCCCCCccCCccceEEE
Confidence            9999999999997  4689999999999999 78889999999853 33557889999999988755433  67899999


Q ss_pred             eeccchhhhhhhcCCC------cCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCccc
Q psy16044        183 VPLHNISVCRDKYGDS------VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGIRY  254 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~------~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~~y  254 (436)
                      +.+++.+.|+..+...      ....+.|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+  +.+.+|
T Consensus       149 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~~lvGI~S~g~~c~~~~~p~vy  227 (261)
T 3gyl_B          149 VPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLWYLTGIVSWGDACGARNRPGVY  227 (261)
T ss_dssp             EEEECHHHHHHHHTTTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEE-TTEEEEEEEECCCCCSSCTTCCEEE
T ss_pred             EEEECHHHhhhhhcccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEEe-CCEEEEEEEEecCCCCCCCCCCCEE
Confidence            9999999999887521      23567999999777778999999999999974 78999999999998754  346799


Q ss_pred             ccccceecCCccccC
Q psy16044        255 SHRQPRLINGKESIR  269 (436)
Q Consensus       255 ~~v~~~~~~~~~~~~  269 (436)
                      ++|..|..||.+.+.
T Consensus       228 t~v~~~~~WI~~~i~  242 (261)
T 3gyl_B          228 TLASSYASWIQSKVT  242 (261)
T ss_dssp             EEGGGGHHHHHHHHH
T ss_pred             EEHHHhHHHHHHHHh
Confidence            999999999987765

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-46  Score=340.99  Aligned_cols=222  Identities=31%  Similarity=0.646  Sum_probs=172.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+.+         .+.|++|.++........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGsLIs~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~~~   65 (238)
T 1spj_A            1 IVGGWECEQHSQPWQAALYHFS------TFQCGGILVHRQWVLTAAHCISD---------NYQLWLGRHNLFDDENTAQF   65 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGCCS---------SEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEeCC------CeeEEEEEecCCEEEEcHHhCCC---------CceEEEEeccccCCCCCceE
Confidence            6899999999999999998642      58999999999999999999853         36899999887666566788


Q ss_pred             EeeeEEEeCCCCC-------------CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC
Q psy16044        107 IPVERIRVHEEFH-------------NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD  173 (436)
Q Consensus       107 ~~v~~i~~hp~y~-------------~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~  173 (436)
                      +.|+++++||+|+             ...+|||||||++|+..++..++|+|||.                         
T Consensus        66 ~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~-------------------------  120 (238)
T 1spj_A           66 VHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPT-------------------------  120 (238)
T ss_dssp             ECEEEEEECTTSCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCS-------------------------
T ss_pred             EEEEEEEcCCCccccccccccccccccCCCCeEEEEECccccccCCceeeccCCC-------------------------
Confidence            8999999999996             23456666666665542344455555554                         


Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcc
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR  253 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~  253 (436)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (238)
T 1spj_A          121 --------------------------------------------------------------------------------  120 (238)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-C
Q psy16044        254 YSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-D  332 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~  332 (436)
                                                                            ...   ..+..|+++|||.+.... .
T Consensus       121 ------------------------------------------------------~~~---~~~~~~~v~GwG~~~~~~~~  143 (238)
T 1spj_A          121 ------------------------------------------------------EEP---EVGSTCLASGWGSIEPENFS  143 (238)
T ss_dssp             ------------------------------------------------------SCC---CTTCEEEEEESSCSSSSSCC
T ss_pred             ------------------------------------------------------CCC---CCCCEEEEEecCCCCCCCCC
Confidence                                                                  221   234445555555443322 2


Q ss_pred             ccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCC
Q psy16044        333 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGY  411 (436)
Q Consensus       333 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~  411 (436)
                      .+..|+++.+++++.++|+..+..  .+++.|||++...+..+.|.|||||||+++.     +|+||+||| ..|+..+.
T Consensus       144 ~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~  216 (238)
T 1spj_A          144 FPDDLQCVDLKILPNDECKKAHVQ--KVTDFMLCVGHLEGGKDTCVGDSGGPLMCDG-----VLQGVTSWGYVPCGTPNK  216 (238)
T ss_dssp             CCSBCEEEEEEEECHHHHHHHCSS--CCCTTEEEEECTTCSSBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTC
T ss_pred             CcCcccEEEEeecCHHHhhhhccC--CCCCCeEEeeCCCCCCCCCCCCCCCcEEEcC-----EEEEEEEeCCCCCCCCCC
Confidence            356799999999999999988754  4689999998766667999999999999842     799999999 68987778


Q ss_pred             CeEEEeCcccHHHHHHHHhhh
Q psy16044        412 PDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       412 p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      |++||||++|++||+++|+++
T Consensus       217 p~vyt~V~~y~~WI~~~i~~~  237 (238)
T 1spj_A          217 PSVAVRVLSYVKWIEDTIAEN  237 (238)
T ss_dssp             CEEEEEGGGGHHHHHHHHHHT
T ss_pred             CeEEEEHHHhHHHHHHHhhcC
Confidence            999999999999999999864

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=7.8e-47  Score=343.17  Aligned_cols=229  Identities=30%  Similarity=0.572  Sum_probs=190.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+....  ....++|+||||+++||||||||+..       ...+.|++|..++.......+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~--~~~~~~CgGsLI~~~~VLTAAHC~~~-------~~~~~v~~G~~~~~~~~~~~~~   71 (240)
T 1gvk_B            1 VVGGTEAQRNSWPSQISLQYRSG--SSWAHTCGGTLIRQNWVMTAAHCVDR-------ELTFRVVVGEHNLNQNNGTEQY   71 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEET--TEEEEEEEEEEEETTEEEECGGGGCS-------CCCEEEEESCSBTTSCCSCCEE
T ss_pred             CCCCeECCCCCcCEEEEEEecCC--CccCceEEEEEeeCCEEEECHHHCCC-------CcceEEEECCeecccCCCcceE
Confidence            78999999999999999986431  11148899999999999999999865       2567899999887766556688


Q ss_pred             EeeeEEEeCCCCCC--C--CCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFHN--Y--HHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~~--~--~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.|+++++||+|+.  .  .+|||||||++|+. ++.+++|+|||.... .+..+..++++|||.+...+..+..|+++.
T Consensus        72 ~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~-~~~~v~pi~lp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  149 (240)
T 1gvk_B           72 VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVT-LNSYVQLGVLPRAGT-ILANNSPCYITGWGLTRTNGQLAQTLQQAY  149 (240)
T ss_dssp             EEEEEEEECTTCCTTCGGGCCCCEEEEESSCCC-CBTTBCCCCCCCTTC-CCCTTCCEEEEESCBSSTTCCBCSBCEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCCCcEEEEEECCccc-cCCCccceecCCCCC-CCCCCCEEEEEecCcCCCCCCcchhccEEE
Confidence            89999999999973  3  78999999999999 778899999998633 345788999999999887777778899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC-CCC---CCccccccc
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCG---VGIRYSHRQ  258 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~-~C~---~~~~y~~v~  258 (436)
                      +++++.+.|+..+.......+.||||+. .+..+.|.|||||||++.. +++|+|+||+|||.. .|+   .+.+|++|.
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~  227 (240)
T 1gvk_B          150 LPTVDYAICSSSSYWGSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVS  227 (240)
T ss_dssp             CCEECHHHHTSTTTTGGGCCTTEEEECC-SSSCBCCTTCTTCEEEEEE-TTEEEEEEEEEECBTTBSSCTTCCEEEEEGG
T ss_pred             EEEEcHHHhccccccCccCCcceEeecC-CCCCcccCCCCcCceEEEE-CCcEEEEEEEEEeCCCCCCCCCCCcEEEeHH
Confidence            9999999998763222235679999984 4457899999999999974 789999999999963 465   467999999


Q ss_pred             ceecCCcccc
Q psy16044        259 PRLINGKESI  268 (436)
Q Consensus       259 ~~~~~~~~~~  268 (436)
                      .|..||.+.+
T Consensus       228 ~~~~WI~~~i  237 (240)
T 1gvk_B          228 AYISWINNVI  237 (240)
T ss_dssp             GSHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=1.1e-46  Score=341.55  Aligned_cols=221  Identities=32%  Similarity=0.639  Sum_probs=172.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+.         ..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLI~~~~VLTAAHC~~---------~~~~v~~G~~~~~~~~~~~~~   65 (237)
T 1ao5_A            1 VVGGFNCEKNSQPWQVAVYYQK------EHICGGVLLDRNWVLTAAHCYV---------DQYEVWLGKNKLFQEEPSAQH   65 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEEEETTEEEECTTCCC---------SSCEEEESCCBSSSCCSSCEE
T ss_pred             CCCCeECCCCCcCCEEEEeeCC------CeEEEEEEeeCCEEEECHHHCC---------CCCEEEecccccccCCCCcEE
Confidence            6899999999999999998642      6899999999999999999984         246899999887655555688


Q ss_pred             EeeeEEEeCCCCCC--C-----------CCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC
Q psy16044        107 IPVERIRVHEEFHN--Y-----------HHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD  173 (436)
Q Consensus       107 ~~v~~i~~hp~y~~--~-----------~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~  173 (436)
                      +.|++++.||+|+.  .           .||||||||++|+. ++..++|||||..                        
T Consensus        66 ~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~-~~~~v~picL~~~------------------------  120 (237)
T 1ao5_A           66 RLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPAD-ITDVVKPIALPTK------------------------  120 (237)
T ss_dssp             CCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCC-CCSSSCCCCCCCS------------------------
T ss_pred             EEEEEEEcCCCcCcccccccccccccCCCCCEEEEEeCCccc-cCCceeCCCcCCC------------------------
Confidence            89999999999962  2           45666666666665 4455555555542                        


Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcc
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR  253 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~  253 (436)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (237)
T 1ao5_A          121 --------------------------------------------------------------------------------  120 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC-CC
Q psy16044        254 YSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GD  332 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~-~~  332 (436)
                                                                             ..   ..++.|.++|||.+... ..
T Consensus       121 -------------------------------------------------------~~---~~~~~~~v~GwG~~~~~~~~  142 (237)
T 1ao5_A          121 -------------------------------------------------------EP---KPGSKCLASGWGSITPTRWQ  142 (237)
T ss_dssp             -------------------------------------------------------CC---CTTCEEEEEESCCSSCC-CC
T ss_pred             -------------------------------------------------------CC---CCCCEEEEEECCccCCCCCC
Confidence                                                                   21   23444555555544332 22


Q ss_pred             ccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCC
Q psy16044        333 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGY  411 (436)
Q Consensus       333 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~  411 (436)
                      .+..|+++.+++++.++|++.+..  .+++.|||++...+..+.|.|||||||+++   +  +|+||+||| .+|+..+.
T Consensus       143 ~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~~~C~~~~~  215 (237)
T 1ao5_A          143 KPDDLQCVFITLLPNENCAKVYLQ--KVTDVMLCAGEMGGGKDTCRDDSGGPLICD---G--ILQGTTSYGPVPCGKPGV  215 (237)
T ss_dssp             CCSBCEEEEEEEECHHHHHHHCSS--CCCTTEEEEECTTCSCBCCTTCTTCEEEET---T--EEEEEEEECCSSTTCTTC
T ss_pred             CCCcccEEEEEecChhHhhhhhcc--cCCCCEEEEccCCCCCCCCCCCCcceEEEC---C--EEeEEEeEcCCCCCCCCC
Confidence            356799999999999999988754  478999999844455689999999999993   2  699999999 78988788


Q ss_pred             CeEEEeCcccHHHHHHHHhhh
Q psy16044        412 PDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       412 p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      |++||||+.|++||+++|+++
T Consensus       216 p~vyt~V~~~~~WI~~~~~~n  236 (237)
T 1ao5_A          216 PAIYTNLIKFNSWIKDTMMKN  236 (237)
T ss_dssp             CEEEECGGGGHHHHHHHHHHC
T ss_pred             CcEEEEHHHHHHHHHHHHhhc
Confidence            999999999999999999764

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-46  Score=338.56  Aligned_cols=229  Identities=29%  Similarity=0.560  Sum_probs=179.8

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc--CCce
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE--EKSE  104 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~--~~~~  104 (436)
                      |+||+   +++|||+|+|+...     ..++|+||||+++||||||||+....   .....+.|++|..+....  ....
T Consensus         1 IvgG~---~~~~Pw~v~l~~~~-----~~~~CgGtLI~~~~VLTAAHC~~~~~---~~~~~~~v~~G~~~~~~~~~~~~~   69 (234)
T 2asu_B            1 VVGGH---PGNSPWTVSLRNRQ-----GQHFCGGSLVKEQWILTARQCFSSCH---MPLTGYEVWLGTLFQNPQHGEPSL   69 (234)
T ss_dssp             CBSCE---ECCCTTEEEEECTT-----SCEEEEEEEEETTEEEEEGGGSSCTT---CCCTTCEEEESCSBSSCCTTCTTC
T ss_pred             CCCcc---cCCCcceEEeeccC-----CCEEEEEEEEeCCEEEECHHHcCCCC---CCcccEEEEEeeeeccCCCCCCce
Confidence            67888   57899999998642     16899999999999999999996531   124668999998876554  4456


Q ss_pred             EEEeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        105 VRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       105 ~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.+.|.+++.||.    .+|||||||++|+. ++.+++|||||... .....+..++++|||.                 
T Consensus        70 ~~~~v~~i~~hp~----~~DiALl~L~~~v~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~-----------------  126 (234)
T 2asu_B           70 QRVPVAKMVCGPS----GSQLVLLKLERSVT-LNQRVALICLPPEW-YVVPPGTKCEIAGWGE-----------------  126 (234)
T ss_dssp             EEEEEEEEEECST----TCCEEEEEESSCCC-CSSSSCCCBCCCTT-CCCCTTCEEEEEESSC-----------------
T ss_pred             EEEEEEEEecCCC----CCCeEEEEeCCcCc-CCCcEeccCCCCcc-ccCCCCCEEEEEeCCc-----------------
Confidence            8889999999997    58999999999999 67789999998742 2233445555555553                 


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (234)
T 2asu_B          127 --------------------------------------------------------------------------------  126 (234)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                    +.... .+..|+++.+++
T Consensus       127 --------------------------------------------------------------~~~~~-~~~~L~~~~~~~  143 (234)
T 2asu_B          127 --------------------------------------------------------------TKGTG-NDTVLNVALLNV  143 (234)
T ss_dssp             --------------------------------------------------------------CTTSS-CTTBCEEEEEEE
T ss_pred             --------------------------------------------------------------cCCCC-CCccceEEEeeE
Confidence                                                                          32211 245688889999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.++|+..+..  .+.+.|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|++|
T Consensus       144 ~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~W  220 (234)
T 2asu_B          144 ISNQECNIKHRG--RVRESEMCTEGLLAPVGACEGDYGGPLACFT-HNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDW  220 (234)
T ss_dssp             ECHHHHHHHTTT--CCCTTEEEECCCSSCCBCCTTCTTCEEEEEE-TTEEEEEEEECCCSSSSCTTCCEEEEEGGGSHHH
T ss_pred             EcHHHcccccCC--ccCcceEeecCCCCCCeeccCCCCCceEEEE-CCeEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHH
Confidence            999999887744  4688999998766567899999999999985 7899999999999999887889999999999999


Q ss_pred             HHHHHhhhhhc
Q psy16044        425 IRKQINIAVDE  435 (436)
Q Consensus       425 I~~~i~~~~~~  435 (436)
                      |+++++...++
T Consensus       221 I~~~~~~~~~~  231 (234)
T 2asu_B          221 IHKVMRLGHHH  231 (234)
T ss_dssp             HHHHC------
T ss_pred             HHHHhhccccc
Confidence            99999876654

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=1.4e-46  Score=344.23  Aligned_cols=233  Identities=27%  Similarity=0.554  Sum_probs=195.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCC---------CCCCCcceEEEeccccC
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF---------SLPIPELWTAVLGDWDR   97 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~---------~~~~~~~~~v~~g~~~~   97 (436)
                      |+||++|.+++|||+|+|.....     .++|+||||+++||||||||+.....         ....+..+.|++|....
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-----~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~   75 (251)
T 3gov_B            1 IFNGRPAQKGTTPWIAMLSHLNG-----QPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWR   75 (251)
T ss_dssp             CBTCEECCTTSCTTEEEEEETTC-----CEEEEEEEETTTEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBS
T ss_pred             CCCCEECCCCCcCeEEEEeccCC-----CeeEEEEEecCCEEEECHhhccccccccccccccccccccccEEEEecceec
Confidence            78999999999999999976421     68899999999999999999965311         11235678999999887


Q ss_pred             CccCCceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCcc
Q psy16044         98 TEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV  175 (436)
Q Consensus        98 ~~~~~~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~  175 (436)
                      .......+.+.|+++++||+|+  ...||||||+|++|+. ++..++|||||....   ..+..++++|||.+... ..+
T Consensus        76 ~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~-~~~~v~picLp~~~~---~~~~~~~v~GwG~~~~~-~~~  150 (251)
T 3gov_B           76 LRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPV-LNAFVMPICLPEGPQ---QEGAMVIVSGWGKQFLQ-RFP  150 (251)
T ss_dssp             SSCCSSCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCC-CSSSCCCCBCCSSCC---CTTCEEEEEECSCCTTS-CCC
T ss_pred             cCCCCcceEeeeEEEEECCCCCCCCCCCCEEEEEeCCccc-CCCceEEeECCCCCC---CCCCEEEEEcCCCCCCC-CCC
Confidence            6666667889999999999997  4679999999999999 788899999998532   46889999999987653 467


Q ss_pred             ccceeeeeeccchhhhhhhcCC-CcCCcCCeEEeccCCCCCCCccCCCCCeeeeEe-cCCcEEEEEEEeEcCCCCC--CC
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGD-SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGYCG--VG  251 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~-~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~~l~GI~S~g~~~C~--~~  251 (436)
                      ..|+++.+++++.+.|+..+.. ....++.|||++...+..++|.|||||||++.. .+++|+|+||+|||.+|+.  .+
T Consensus       151 ~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p  230 (251)
T 3gov_B          151 ETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRY  230 (251)
T ss_dssp             SBCEEEEEEEECHHHHHHHTTTTTCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCC
T ss_pred             ccceEEeeEEECHHHhhhhhhhccCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCC
Confidence            7899999999999999998864 234567999999877778999999999999975 5789999999999987443  35


Q ss_pred             cccccccceecCCccccC
Q psy16044        252 IRYSHRQPRLINGKESIR  269 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~~  269 (436)
                      .+|++|.+|..||.+.+.
T Consensus       231 ~vyt~V~~~~~WI~~~~~  248 (251)
T 3gov_B          231 GVYSYIHHNKDWIQRVTG  248 (251)
T ss_dssp             EEEEETTTTHHHHHHHHC
T ss_pred             EEEEEHHHhHHHHHHHhc
Confidence            799999999999987764

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=1.9e-46  Score=337.52  Aligned_cols=221  Identities=29%  Similarity=0.625  Sum_probs=181.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc-CCceE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE-EKSEV  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~-~~~~~  105 (436)
                      |+||++|.+++|||+|+|+...   +  .++|+||||+++||||||||+..         .+.|++|.++.... ....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---~--~~~CgGtLIs~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~~~   66 (227)
T 2psx_A            1 IINGSDCDMHTQPWQAALLLRP---N--QLYCGAVLVHPQWLLTAAHCRKK---------VFRVRLGHYSLSPVYESGQQ   66 (227)
T ss_dssp             CBTCEECCTTSCTTEEEEEETT---T--EEEEEEEEEETTEEEECGGGCCS---------SCEEEESCCBSSCCCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEEecC---C--CceEEEEEEcCCEEEEhHHcCCC---------CcEEEEeeeecccCCCCCcE
Confidence            7899999999999999998642   1  68999999999999999999853         35899998876543 33457


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      .+.+.++++||+|+  ...||||||||++|+. ++..++|||||..   ....+..++++|||.+.              
T Consensus        67 ~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~-~~~~v~pi~l~~~---~~~~~~~~~v~GwG~~~--------------  128 (227)
T 2psx_A           67 MFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIR-PTKDVRPINVSSH---CPSAGTKCLVSGWGTTK--------------  128 (227)
T ss_dssp             EEEEEEEEECTTCCSSSCTTCCEEEEESSCCC-CCSSSCCCCBCSS---CCCTTCEEEEEESSCSS--------------
T ss_pred             EEEEEEEEeCCCCCCCCCCCCEEEEEeCCCCC-CCCceeeeECCCC---CCCCCCEEEEEeCcccC--------------
Confidence            78999999999997  4689999999999999 6778999999853   23355667777776432              


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecC
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLIN  263 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~  263 (436)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (227)
T 2psx_A          129 --------------------------------------------------------------------------------  128 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEE
Q psy16044        264 GKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRV  342 (436)
Q Consensus       264 ~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~  342 (436)
                                                                                       ... ..+..|+++.+
T Consensus       129 -----------------------------------------------------------------~~~~~~~~~L~~~~~  143 (227)
T 2psx_A          129 -----------------------------------------------------------------SPQVHFPKVLQCLNI  143 (227)
T ss_dssp             -----------------------------------------------------------------SSSCCCCSBCEEEEE
T ss_pred             -----------------------------------------------------------------CCCCCCCchheEEEE
Confidence                                                                             111 12456899999


Q ss_pred             EeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCCCeEEEeCccc
Q psy16044        343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFY  421 (436)
Q Consensus       343 ~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~  421 (436)
                      ++++.++|+..+..  .+.+.|||++. ..+.+.|.|||||||++.+     +|+||+||| .+|+..+.|++||||++|
T Consensus       144 ~i~~~~~C~~~~~~--~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~  215 (227)
T 2psx_A          144 SVLSQKRCEDAYPR--QIDDTMFCAGD-KAGRDSCQGDSGGPVVCNG-----SLQGLVSWGDYPCARPNRPGVYTNLCKF  215 (227)
T ss_dssp             EBCCHHHHHHHSTT--TCCTTEEEECC-STTCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEEGGGC
T ss_pred             EecCHhHhhhhcCC--CCCCCEEcccC-CCCCccCCCCCCcceeeCC-----EEEEEEeecCCCCCCCCCCcEEEEHHHh
Confidence            99999999988765  46899999986 3446899999999999842     699999999 689877789999999999


Q ss_pred             HHHHHHHHhhh
Q psy16044        422 LPWIRKQINIA  432 (436)
Q Consensus       422 ~~WI~~~i~~~  432 (436)
                      ++||+++|+.+
T Consensus       216 ~~WI~~~~~~~  226 (227)
T 2psx_A          216 TKWIQETIQAN  226 (227)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=3.4e-47  Score=345.85  Aligned_cols=228  Identities=27%  Similarity=0.504  Sum_probs=192.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...     ..++|+||||+++||||||||+...       ..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~-----~~~~CgGtLIs~~~VLTAAhC~~~~-------~~~~V~~G~~~~~~~~~~~~~   68 (241)
T 2jkh_A            1 IVGGQECKDGECPWQALLINEE-----NEGFCGGTILSEFYILTAAHCLYQA-------KRFKVRVGDRNTEQEEGGEAV   68 (241)
T ss_dssp             CBSSEECCTTSSTTEEEEECTT-----SCEEEEEEECSSSEEEECGGGGGSC-------SSCEEEESCSBTTCCCSCCEE
T ss_pred             CCCCEECCCCCcCcEEEEEcCC-----CCcEEEEEEeeCCEEEEcHHHcCCC-------CcEEEEECCccCCCCCCCcEE
Confidence            6899999999999999997532     1689999999999999999999652       357899999877665556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCC--CCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKR--PVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~--~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.|+++++||+|+  ...||||||+|++|+. ++.+++|||||..+..  ....+..++++|||.+...+..+..|++..
T Consensus        69 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  147 (241)
T 2jkh_A           69 HEVEVVIKHNRFTKETYDFDIAVLRLKTPIT-FRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLE  147 (241)
T ss_dssp             ECEEEEEECTTCBTTTTBTCCEEEEESSCCC-CBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEE
T ss_pred             EEeEEEEeCCCCCCCCCCCcEEEEEECCccc-CCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEee
Confidence            8999999999997  4689999999999999 7788999999974211  134578999999999887666778899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccce
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPR  260 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~  260 (436)
                      +++++.+.|+..+..  ...+.||||+...+..++|.|||||||++.. +++|+|+||+|||.+|+.  .+.+|++|..|
T Consensus       148 ~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~  224 (241)
T 2jkh_A          148 VPYVDRNSCKLSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRF-KDTYFVTGIVSWGEGCARKGKYGIYTKVTAF  224 (241)
T ss_dssp             EEEECHHHHHHHCSS--CCCTTEEEESCSSSSCBCCTTTTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGG
T ss_pred             eccccHHHhcccccC--cCCCCeEEeeCCCCCCccCcCcCCCeeEEEE-CCEEEEEEEEEECCCCCCCCCceEEEEhHHH
Confidence            999999999987753  3567999998766668999999999999974 789999999999988542  46799999999


Q ss_pred             ecCCccccCC
Q psy16044        261 LINGKESIRG  270 (436)
Q Consensus       261 ~~~~~~~~~~  270 (436)
                      ..||.+.+..
T Consensus       225 ~~WI~~~~~~  234 (241)
T 2jkh_A          225 LKWIDRSMKT  234 (241)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHhcc
Confidence            9999887764

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=8.2e-47  Score=343.14  Aligned_cols=227  Identities=28%  Similarity=0.480  Sum_probs=190.7

Q ss_pred             CeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCce
Q psy16044         25 PRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSE  104 (436)
Q Consensus        25 ~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~  104 (436)
                      .||+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...    .....+.|++|..++.......
T Consensus         1 ~rIvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAHC~~~~----~~~~~~~v~~G~~~~~~~~~~~   70 (240)
T 1mza_A            1 MEIIGGKEVSPHSRPFMASIQYGG------HHVCGGVLIDPQWVLTAAHCQYRF----TKGQSPTVVLGAHSLSKNEASK   70 (240)
T ss_dssp             CCCCCCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGSCTT----CSCSCEEEEESCSBSSSCCTTC
T ss_pred             CceECCEECCCCCCCeEEEEeeCC------ceEEEEEEecCCEEEECHHhCCCC----CCCCCeEEEeCceecCCCCCce
Confidence            389999999999999999998642      689999999999999999998642    1235688999998876655556


Q ss_pred             EEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC-ccccceee
Q psy16044        105 VRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSKLRQI  181 (436)
Q Consensus       105 ~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~-~~~~l~~~  181 (436)
                      +.+.|+++++||+|+  ...||||||||++|+. ++..++|||||..  .....+..++++|||.+...+. .+..|+++
T Consensus        71 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~-~~~~v~pi~l~~~--~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~  147 (240)
T 1mza_A           71 QTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAK-LNKHVKMLHIRSK--TSLRSGTKCKVTGWGATDPDSLRPSDTLREV  147 (240)
T ss_dssp             EEEEEEEEEECCCSSCSSSSSCCEEEEESSCCC-CBTTBCCCCBCSS--CCCCTTCEEEEEECCCSSTTCSSCCSBCEEE
T ss_pred             EEEEEEEEEeCCCccCCCCCceEEEEEeCCCcc-cCCceeeeecCCc--ccCCCCCEEEEEeCCcCCCCCCCccccceEe
Confidence            889999999999997  4689999999999999 7788999999974  2345788999999999886654 57789999


Q ss_pred             eeeccchhhhh--hhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CCccccc
Q psy16044        182 RVPLHNISVCR--DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VGIRYSH  256 (436)
Q Consensus       182 ~~~~~~~~~C~--~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~~~y~~  256 (436)
                      .+++++.+.|+  ..+.......+.||||+...+..++|.|||||||+++   +  +|+||+|||.+ |+   .+.+|++
T Consensus       148 ~~~i~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~---~--~l~Gi~S~g~~-C~~~~~p~vyt~  221 (240)
T 1mza_A          148 TVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICK---G--VFHAIVSGGHE-CGVATKPGIYTL  221 (240)
T ss_dssp             EEEECCHHHHTSTTTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEET---T--EEEEEECSSCC-SSCTTCCEEEEE
T ss_pred             EEEEeCHHHcCCcceeCCCCcCCCCeEeecCCCCCCccCCCCCCCeeEEC---C--EEEEEEEECCC-CCCCCCCcEEEe
Confidence            99999999998  4454322456799999976666899999999999984   2  69999999987 64   3679999


Q ss_pred             ccc-eecCCccccCC
Q psy16044        257 RQP-RLINGKESIRG  270 (436)
Q Consensus       257 v~~-~~~~~~~~~~~  270 (436)
                      |.. |..||.+.+..
T Consensus       222 v~~~y~~WI~~~~~~  236 (240)
T 1mza_A          222 LTKKYQTWIKSNLVP  236 (240)
T ss_dssp             CCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHhccC
Confidence            998 99999987764

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=1.7e-46  Score=342.87  Aligned_cols=230  Identities=28%  Similarity=0.519  Sum_probs=192.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.+|..++|||+|+|+..       .++|+||||+++||||||||+....    ....+.|++|.++........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~-------~~~CgGsLIs~~~VLTAAHC~~~~~----~~~~~~V~~G~~~~~~~~~~~~~   69 (248)
T 2r0l_A            1 IIGGSSSLPGSHPWLAAIYIG-------DSFCAGSLVHTCWVVSAAHCFSHSP----PRDSVSVVLGQHFFNRTTDVTQT   69 (248)
T ss_dssp             CBSCEECCTTSSTTEEEEEET-------TEEEEEEEEETTEEEECGGGGTTCC----CGGGEEEEESCCBTTCCCSSCEE
T ss_pred             CCCCccCCCCCCCeEEEEEcC-------CceEEEEEEcCCEEEECHHHcCCCC----CcCcEEEEEEeEEcCCCCCccEE
Confidence            689999999999999999753       5889999999999999999996531    23678999999887766666788


Q ss_pred             EeeeEEEeCCCCCC---CCCceeEEEeCCC----CCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC-ccccc
Q psy16044        107 IPVERIRVHEEFHN---YHHDIALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSKL  178 (436)
Q Consensus       107 ~~v~~i~~hp~y~~---~~~DiAll~L~~~----~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~-~~~~l  178 (436)
                      +.|+++++||.|+.   ..+|||||||++|    +. ++.+++|||||... .....+..++++|||.+..... .+..|
T Consensus        70 ~~v~~i~~hp~y~~~~~~~~DiALl~L~~~~~~~~~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L  147 (248)
T 2r0l_A           70 FGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT-RSQFVQPICLPEPG-STFPAGHKCQIAGWGHLDENVSGYSSSL  147 (248)
T ss_dssp             ECEEEEEECTTCCTTSTTTTCCEEEEECCSSSCSSC-CBTTBCCCBCCCTT-CCCCTTCEEEEEESCCSSSSCCSCCSBC
T ss_pred             EeeeEEEeCCccCcCCCCCCCEEEEEeCCccccccc-CCCcEEEEECCCCC-CCCCCCCEEEEEEccccCCCCCCCCchh
Confidence            99999999999963   6799999999999    66 67889999999853 3345789999999998875543 46789


Q ss_pred             eeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCccccc
Q psy16044        179 RQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGIRYSH  256 (436)
Q Consensus       179 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~~y~~  256 (436)
                      +++.+++++.+.|+..........+.|||++...+..++|.|||||||++.. +++|+|+||+|||.+|+  +.+.+|++
T Consensus       148 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~g~~~l~GI~S~g~~C~~~~~p~vyt~  226 (248)
T 2r0l_A          148 REALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTR  226 (248)
T ss_dssp             EEEEEEBCCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSTTTCTTCCEEEEE
T ss_pred             eEEEEeeeCHHHhCCccccCCcCCCCEEeECCCCCCCcCCCCccCCeEEEEE-CCcEEEEEEEEeCCCCCCCCCCcEEEE
Confidence            9999999999999875332234567999999876668999999999999984 78999999999998743  34689999


Q ss_pred             ccceecCCccccCC
Q psy16044        257 RQPRLINGKESIRG  270 (436)
Q Consensus       257 v~~~~~~~~~~~~~  270 (436)
                      |.+|..||.+.+..
T Consensus       227 V~~~~~WI~~~~~~  240 (248)
T 2r0l_A          227 VANYVDWINDRIRP  240 (248)
T ss_dssp             GGGGHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999887753

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=3.4e-46  Score=335.33  Aligned_cols=219  Identities=34%  Similarity=0.653  Sum_probs=184.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|...       .++|+||||+++||||||||+..         .+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~-------~~~C~GtLI~~~~VLTAAhC~~~---------~~~v~~g~~~~~~~~~~~~~   64 (223)
T 4i8h_A            1 IVGGYTCGANTVPYQVSLNSG-------YHFCGGSLINSQWVVSAAHCYKS---------GIQVRLGEDNINVVEGNEQF   64 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEESS-------SEEEEEEECSSSEEEECGGGCCS---------SCEEEESCSSTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCeEEEecCC-------CcEEEEEEEcCCEEEecHHhCCC---------CcEEEEccccccccCCCcEE
Confidence            689999999999999999721       68899999999999999999853         46899999887766666788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|.++++||+|+  ...||||||||++|+. ++..++|||||...   ...+..++++|||.+.               
T Consensus        65 ~~v~~~~~hp~y~~~~~~~DIAll~L~~~~~-~~~~v~pi~l~~~~---~~~~~~~~v~GwG~~~---------------  125 (223)
T 4i8h_A           65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAAS-LNSRVASISLPTSC---ASAGTQCLISGWGNTK---------------  125 (223)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCBCCSSC---CCTTCEEEEEESSCCC---------------
T ss_pred             EEEeEEEECcCCCCCCCcCCEEEEEECCcCc-CCCceeceECCCCC---CCCCCEEEEEeccccc---------------
Confidence            8999999999997  4679999999999999 67789999998742   3456667777776432               


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (223)
T 4i8h_A          126 --------------------------------------------------------------------------------  125 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC-CCccccceEEEEE
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVP  343 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~  343 (436)
                                                                                      .. ...+..|+++.++
T Consensus       126 ----------------------------------------------------------------~~~~~~~~~l~~~~~~  141 (223)
T 4i8h_A          126 ----------------------------------------------------------------SSGTSYPDVLKCLKAP  141 (223)
T ss_dssp             ----------------------------------------------------------------SSSCCCCSSCEEEEEE
T ss_pred             ----------------------------------------------------------------CCCCCccccceEEEee
Confidence                                                                            11 1124568899999


Q ss_pred             eeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHH
Q psy16044        344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       344 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~  423 (436)
                      +++.++|+..+..  .++++|||++...+..+.|.|||||||++..     +|+||+|||.+|+..+.|++||||+.|++
T Consensus       142 ~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~  214 (223)
T 4i8h_A          142 ILSDSSCKSAYPG--QITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-----KLQGIVSWGSGCAQKNKPGVYTKVCNYVS  214 (223)
T ss_dssp             BCCHHHHHHHSTT--TCCTTEEEESCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSCTTCCEEEEEGGGGHH
T ss_pred             ecCHHHHHHhhCC--CCCCCeEeccCCCCCCccCCCCCCCcEEECC-----EEEEEEEcCCCCCCCCCCeEEEEHHHHHH
Confidence            9999999998865  5789999998766667999999999999953     59999999999988788999999999999


Q ss_pred             HHHHHHhh
Q psy16044        424 WIRKQINI  431 (436)
Q Consensus       424 WI~~~i~~  431 (436)
                      ||+++|+.
T Consensus       215 WI~~~i~~  222 (223)
T 4i8h_A          215 WIKQTIAS  222 (223)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999975

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=1.2e-46  Score=343.93  Aligned_cols=235  Identities=27%  Similarity=0.466  Sum_probs=196.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+..... +...++|+||||+++||||||||+.+.    .....+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~-~~~~~~CgGtLI~~~~VLTAAHC~~~~----~~~~~~~v~~g~~~~~~~~~~~~~   75 (247)
T 3mhw_U            1 IIGGEFTTIENQPWFAAIYRRHRG-GSVTYVCGGSLISPCWVISATHCFIDY----PKKEDYIVYLGRSRLNSNTQGEMK   75 (247)
T ss_dssp             CBSSEECCGGGSTTEEEEEEECTT-SCEEEEEEEEEEETTEEEECGGGTTTS----CCGGGEEEEESCCBSSSCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEEEecCC-CccceEEEEEEEeCCEEEEcHHhCcCC----CCCccEEEEeccccccCCCCCCEE
Confidence            789999999999999999876432 222578999999999999999999753    134568999999888776667788


Q ss_pred             EeeeEEEeCCCCCC----CCCceeEEEeCCC----CCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC-cccc
Q psy16044        107 IPVERIRVHEEFHN----YHHDIALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSK  177 (436)
Q Consensus       107 ~~v~~i~~hp~y~~----~~~DiAll~L~~~----~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~-~~~~  177 (436)
                      +.|+++++||+|+.    ..||||||||++|    +. ++..++|+|||... .....+..|+++|||.+..... .+..
T Consensus        76 ~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~-~~~~v~pi~lp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~  153 (247)
T 3mhw_U           76 FEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQ-PSRTIQTISLPSMY-NDPQFGTSCEITGFGKENSTDYLYPEQ  153 (247)
T ss_dssp             EEEEEEEECTTCEEC-CCEESCCEEEEEECTTSCCCC-CBTTBCCCBCCCTT-CCCCTTCEEEEEESCCSSTTCSSCCSB
T ss_pred             EEEEEEEECCCCCCCcCCCCCcEEEEEeCCccccccc-cCCcccccccCCCc-CCCCCCCEEEEEecCCcCCCCcccchh
Confidence            99999999999973    4589999999999    56 67789999999853 3345688999999998875543 5678


Q ss_pred             ceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccc
Q psy16044        178 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYS  255 (436)
Q Consensus       178 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~  255 (436)
                      |+...+++++.+.|+..+.......+.|||++...+..++|.|||||||++.. +++|+|+||+|||.+|+.  .+.+|+
T Consensus       154 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~-~~~~~l~Gi~S~g~~c~~~~~p~vyt  232 (247)
T 3mhw_U          154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYT  232 (247)
T ss_dssp             CEEEEEEEECHHHHTSTTTTGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEEEE
T ss_pred             heeeEEEEEChHHhcCccccCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEE-CCCEEEEEEEEECCCCCCCCCCeEEE
Confidence            99999999999999886543345667999999887778999999999999974 789999999999988542  467999


Q ss_pred             cccceecCCccccC
Q psy16044        256 HRQPRLINGKESIR  269 (436)
Q Consensus       256 ~v~~~~~~~~~~~~  269 (436)
                      +|..|..||++.+.
T Consensus       233 ~V~~~~~WI~~~~~  246 (247)
T 3mhw_U          233 RVSHFLPWIRSHTK  246 (247)
T ss_dssp             EGGGCHHHHHHHTT
T ss_pred             EHHHHHHHHHHHhc
Confidence            99999999987654

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=3.2e-47  Score=344.83  Aligned_cols=226  Identities=32%  Similarity=0.559  Sum_probs=190.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|....      .++|+||||+++||||||||+...       ..+.|++|.++........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAhC~~~~-------~~~~v~~G~~~~~~~~~~~~~   67 (235)
T 2wph_S            1 VVGGEDAKPGQFPWQVVLNGKV------DAFCGGSIVNEKWIVTAAHCVETG-------VKITVVAGEHNIEETEHTEQK   67 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEESSS------TTCEEEEEEETTEEEECGGGCCTT-------SCCEEEESCCBTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCeEEEEccCC------CeeEEEEEEeCCEEEECHHHCcCC-------CCEEEEEcccccCCCCCCcEE
Confidence            6899999999999999997542      578999999999999999999652       357899999887766556688


Q ss_pred             EeeeEEEeCCCCCC----CCCceeEEEeCCCCCCCCCceeeeeecCCCCC-CCCCCCcEEEEecCccCCCCCccccceee
Q psy16044        107 IPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSKLRQI  181 (436)
Q Consensus       107 ~~v~~i~~hp~y~~----~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~-~~~~~~~~~~~GwG~~~~~~~~~~~l~~~  181 (436)
                      +.|.++++||+|+.    ..||||||||++|+. ++.+++|||||..... ....+..++++|||.+...+..+..|++.
T Consensus        68 ~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~~-~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  146 (235)
T 2wph_S           68 RNVIRIIPHHNFNAAINTYNHDIALLELDEPLV-LNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYL  146 (235)
T ss_dssp             EEEEEEEECTTTTSSSSCCTTCCEEEEESSCCC-CBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEE
T ss_pred             eeeEEEEeCCCCcccCCcCCCCEEEEEECCcCc-CCCCccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEe
Confidence            89999999999973    578999999999999 7788999999974211 12246789999999988766777889999


Q ss_pred             eeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCcccccccc
Q psy16044        182 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGIRYSHRQP  259 (436)
Q Consensus       182 ~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~~y~~v~~  259 (436)
                      .+++++.+.|...+..  ...+.||||+...+..+.|.|||||||++. .+++|+|+||+|||.+|+  +.+.+|++|..
T Consensus       147 ~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~-~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~  223 (235)
T 2wph_S          147 RVPLVDRATCLRSTKF--TITNNMFCAGFHEGGRDSCQGDSGGPHVTE-VEGTSFLTGIISWGEECAMKGKYGIYTKVSR  223 (235)
T ss_dssp             EEEEECHHHHHHTCSS--CCCTTEEEESCTTCSCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGG
T ss_pred             eeeeeCHHHhcCcccC--CCCCCEEEeCCCCCCCccCCCCCCCceEEe-ECCeEEEEEEEEECCCCCCCCCCeEEEEHHH
Confidence            9999999999987753  346799999876666899999999999997 478999999999998844  24679999999


Q ss_pred             eecCCccccC
Q psy16044        260 RLINGKESIR  269 (436)
Q Consensus       260 ~~~~~~~~~~  269 (436)
                      |..||.+.+.
T Consensus       224 ~~~WI~~~~~  233 (235)
T 2wph_S          224 YVNWIKEKTK  233 (235)
T ss_dssp             GHHHHHHHCC
T ss_pred             hHHHHHHHHh
Confidence            9999988765

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=1.3e-46  Score=342.98  Aligned_cols=229  Identities=35%  Similarity=0.641  Sum_probs=187.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+....   ...++|+||||+++||||||||+....   .....+.|++|..+...   ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~---~~~~~CgGtLIs~~~VLTAAHC~~~~~---~~~~~~~v~~g~~~~~~---~~~~   71 (245)
T 2f9n_A            1 IVGGQEAPRSKWPWQVSLRVRDR---YWMHFCGGSLIHPQWVLTAAHCVGPDV---KDLATLRVQLREQHLYY---QDQL   71 (245)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESS---SEEEEEEEEEEETTEEEECGGGGCSSC---CCGGGEEEECSCSBTTT---TCCC
T ss_pred             CCCCeECCCCCCCcEEEEEEcCC---CcceEEEEEEeeCCEEEECHHhCCCCC---CCcceEEEEeCCccccc---CceE
Confidence            78999999999999999987532   125899999999999999999996431   13456889999876643   2356


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCc--cccceeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL--VSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~--~~~l~~~~  182 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++..++|||||... .....+..|+++|||.+...+..  +..|+++.
T Consensus        72 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~  149 (245)
T 2f9n_A           72 LPVSRIIVHPQFYIIQTGADIALLELEEPVN-ISSRVHTVMLPPAS-ETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVK  149 (245)
T ss_dssp             BCEEEEEECTTCCSSCCTTCCEEEEESSCCC-CCSSSCCCBCCCTT-CCCCTTCCEEEEESCCSBTTBCCCTTCBCEEEE
T ss_pred             EEEEEEEECCCccCCCCCCcEEEEEeCCCCc-CCCCccccCCCCcc-cCCCCCCEEEEEEeCCCCCCCCCCccccceEEE
Confidence            7899999999997  4689999999999999 77889999999753 33457889999999988755433  34799999


Q ss_pred             eeccchhhhhhhcCCC-------cCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCcc
Q psy16044        183 VPLHNISVCRDKYGDS-------VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGIR  253 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~-------~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~~  253 (436)
                      +++++.+.|+..+...       ....+.||||+.  ...+.|.|||||||++.. +++|+|+||+|||.+|+  +.+.+
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~Ca~~--~~~~~C~GDSGgPL~~~~-~g~~~l~GI~S~g~~C~~~~~p~v  226 (245)
T 2f9n_A          150 VPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGN--SQRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGI  226 (245)
T ss_dssp             CCEECHHHHHHHHHTTCCSCTTSCCSCTTEEEECC--SSSBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEE
T ss_pred             EEEcCHHHhhhhhcccccccccccccccccEeecC--CCCCcCCCCCCCceEEEE-CCEEEEEEEEEeCCCCCCCCCCeE
Confidence            9999999999877431       235679999984  347899999999999985 78999999999998854  24689


Q ss_pred             cccccceecCCccccC
Q psy16044        254 YSHRQPRLINGKESIR  269 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~  269 (436)
                      |++|..|..||.+.+.
T Consensus       227 yt~V~~y~~WI~~~~~  242 (245)
T 2f9n_A          227 YTRVTYYLDWIHHYVP  242 (245)
T ss_dssp             EEEGGGGHHHHHHHSC
T ss_pred             EEEHHHHHHHHHHHhh
Confidence            9999999999987765

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=2e-46  Score=337.84  Aligned_cols=224  Identities=27%  Similarity=0.508  Sum_probs=193.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||+++.+++|||+|+|+......  ..++|+||||+++||||||||+.         ..+.|++|.++........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~--~~~~CgGtLI~~~~VLTAAHC~~---------~~~~v~~G~~~~~~~~~~~~~   69 (227)
T 3fzz_A            1 IIGGNEISPHSRPYMAYYEFLKVGG--KKMFCGGFLVRDKFVLTAAHCKG---------RSMTVTLGAHNIKAKEETQQI   69 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSSS--CEEEEEEEEEETTEEEECTTCCC---------EEEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCcCCEEEEEEEeCCC--ceeEEEEEEEeCCEEEECcccCC---------CCcEEEEcccccCCCCCCceE
Confidence            7899999999999999998764322  26899999999999999999973         357899999888776667788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++..++|||||... .....+..++++|||.+...+..+..|+++.++
T Consensus        70 ~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~  147 (227)
T 3fzz_A           70 IPVAKAIPHPDYNPDDRSNDIMLLKLVRNAK-RTRAVRPLNLPRRN-AHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLT  147 (227)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCC-CBTTBCCCCCCCTT-CCCCTTCEEEEEESSCSSTTSCCCSBCEEEEEE
T ss_pred             EEEEEEEECcCCCCCCCcCCEEEEEECCcCC-CCCcccccCCCCcc-cCCCCCCEEEEEECCcccCCCCCCCeeeEEEee
Confidence            9999999999997  4679999999999999 78889999999864 334578999999999988777778899999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.+.|...+.... ..+.++|++...+..+.|.|||||||++..     +|+||+|||.+|+..+.+|++|.+|..||
T Consensus       148 ~~~~~~C~~~~~~~~-~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-----~l~Gi~S~g~~c~~~p~vyt~V~~~~~WI  221 (227)
T 3fzz_A          148 VQKDQVCESQFQSSY-NRANEICVGDSKIKGASFEEDSGGPLVCKR-----AAAGIVSYGQTDGSAPQVFTRVLSFVSWI  221 (227)
T ss_dssp             BCCHHHHHHHHTTTC-CTTTEEEECCCSSCBCCTTTTTTCEEEETT-----EEEEEEEECCTTCSSSEEEEEGGGTHHHH
T ss_pred             eecHHHhhhhhcccc-CCCceEEEeCCCCCCcccccCCccceEEec-----CCcEEEEECCCCCCCCeEEEEhHHhHHHH
Confidence            999999998775433 356899999877778999999999999853     69999999998777789999999999999


Q ss_pred             ccccC
Q psy16044        265 KESIR  269 (436)
Q Consensus       265 ~~~~~  269 (436)
                      .+.+.
T Consensus       222 ~~~i~  226 (227)
T 3fzz_A          222 KKTMK  226 (227)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87654

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=1.7e-46  Score=341.39  Aligned_cols=228  Identities=28%  Similarity=0.544  Sum_probs=189.8

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+....   ...++|+||||+++||||||||+...     .+..+.|++|..+.... ...+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~---~~~~~CgGtLIs~~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~-~~~~~   71 (241)
T 1m9u_A            1 VIGGTNASPGEFPWQLSQQRQSG---SWSHSCGASLLSSTSALSASHCVDGV-----LPNNIRVIAGLWQQSDT-SGTQT   71 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESS---SEEEEEEEEECSSSEEEECHHHHTTC-----CGGGEEEEESCSBTTCC-TTCEE
T ss_pred             CCCCeECCCCCcCeEEEEEecCC---ceeeeeEEEEEeCCEEEecHHhCCCC-----CcceEEEEEEeecCCCC-CCceE
Confidence            78999999999999999987531   22589999999999999999999653     35678999998876643 34578


Q ss_pred             EeeeEEEeCCCC--C--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEF--H--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y--~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.|+++++||+|  +  ...||||||||++|+. ++..++|+|||....... .+..++++|||.+...+..+..|+++.
T Consensus        72 ~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~  149 (241)
T 1m9u_A           72 ANVDSYTMHENYGAGTASYSNDIAILHLATSIS-LGGNIQAAVLPANNNNDY-AGTTCVISGWGRTDGTNNLPDILQKSS  149 (241)
T ss_dssp             EEEEEEEECTTTTCSSSTTTTCCEEEEESSCCC-CCSSCCCCCCCSCSSCCC-TTCEEEEEESSCSSSSSCCCSBCEEEE
T ss_pred             EEEEEEEeCCCcCCCCCcccccEEEEEecCccc-cCCCccccCcCCCcCCCC-CCCEEEEEeCcccCCCCCcccceeEee
Confidence            899999999999  4  4689999999999999 788899999998622223 788999999999887666778899999


Q ss_pred             eeccchhhhhhhcCCCcC--CcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeE--c--CCCC--CCCccc
Q psy16044        183 VPLHNISVCRDKYGDSVE--LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF--G--SGYC--GVGIRY  254 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~--~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~--g--~~~C--~~~~~y  254 (436)
                      +++++.++|+..+.....  ..+.|||++...+..+.|.|||||||++..  ++|+|+||+||  +  .+||  +.+.+|
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~--~~~~l~Gi~S~~~~~g~~C~~~~~p~vy  227 (241)
T 1m9u_A          150 IPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD--GGTRVVGVTSWVVSSGLGACLPDYPSVY  227 (241)
T ss_dssp             EEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES--SSEEEEEEEEECCBCTTSCBCTTSCEEE
T ss_pred             EEEEcHHHhhhhhcccCCCcccCCcEEECcCCCCCeeecCcCCccEEEeC--CCEEEEEEEEEeccCCCCccCCCCCEEE
Confidence            999999999987643222  567999999866668999999999999973  88999999999  4  4544  346899


Q ss_pred             ccccceecCCccc
Q psy16044        255 SHRQPRLINGKES  267 (436)
Q Consensus       255 ~~v~~~~~~~~~~  267 (436)
                      ++|..|..||.+.
T Consensus       228 t~V~~~~~WI~~~  240 (241)
T 1m9u_A          228 TRVSAYLGWIGDN  240 (241)
T ss_dssp             EEGGGTHHHHHHH
T ss_pred             EEhHHhHhHHhhh
Confidence            9999999999764

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=1.6e-46  Score=340.82  Aligned_cols=223  Identities=28%  Similarity=0.503  Sum_probs=187.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...      ...+.|++|..+....   .+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAHC~~~~------~~~~~v~~G~~~~~~~---~~~   65 (240)
T 2zgc_A            1 IIGGREVIPHSRPYMASLQRNG------SHLCGGVLVHPKWVLTAAHCLAQR------MAQLRLVLGLHTLDSP---GLT   65 (240)
T ss_dssp             CBTCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGGCSC------GGGEEEEESCSBSSSC---CEE
T ss_pred             CCCCEECCCCCcCcEEEEEeCC------CeEEEEEEEcCCEEEEcHHhcCCC------CCCEEEEecccccCCC---CeE
Confidence            7899999999999999998632      689999999999999999999653      2368899998776543   377


Q ss_pred             EeeeEEEeCCCCCC---CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        107 IPVERIRVHEEFHN---YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       107 ~~v~~i~~hp~y~~---~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      +.|+++++||+|+.   ..||||||||++|+. ++.+++|||||.... ....+..++++|||.+...+..+..|+++.+
T Consensus        66 ~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~  143 (240)
T 2zgc_A           66 FHIKAAIQHPRYKPVPALENDLALLQLDGKVK-PSRTIRPLALPSKRQ-VVAAGTRCSMAGWGLTHQGGRLSRVLRELDL  143 (240)
T ss_dssp             EEEEEEEECTTCBCTTSCBSCCEEEEESSCCC-CCSSCCCCCCCCTTC-CCCTTCEEEEEECCBSSTTCCBCSBCEEEEE
T ss_pred             EEEEEEEECCCCCCCCCCcccEEEEEeCCccc-CCCceeeeEcCCCCC-CCCCCCEEEEEECCcccCCCCcCceeeeeee
Confidence            89999999999973   679999999999999 788899999998533 3457899999999998866677788999999


Q ss_pred             eccchhhhhh--hcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CCccccccc
Q psy16044        184 PLHNISVCRD--KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VGIRYSHRQ  258 (436)
Q Consensus       184 ~~~~~~~C~~--~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~~~y~~v~  258 (436)
                      ++++.+.|+.  .+..  ...+.|||++...+..++|.|||||||++.   +.|+|+||+|||...|+   .+.+|++|.
T Consensus       144 ~~~~~~~C~~~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~  218 (240)
T 2zgc_A          144 QVLDTRMCNNSRFWNG--SLSPSMVCLAADSKDQAPCKGDSGGPLVCG---KGRVLAGVLSFSSRVCTDIFKPPVATAVA  218 (240)
T ss_dssp             EECCHHHHTSTTTTTT--CCCTTEEEEECSSTTCBCCTTCTTCEEEET---TTTEEEEEECCCCSSTTCTTSCCEEEESG
T ss_pred             eecCHHHhCCccccCC--CCCCceEeeccCCCCCccCCCCccCeeEEC---CCCEEEEEEEECCCCCCCCCCCcEEEEHH
Confidence            9999999987  4433  345689999877666899999999999984   34899999999955565   368999999


Q ss_pred             ceecCCccccCCC
Q psy16044        259 PRLINGKESIRGA  271 (436)
Q Consensus       259 ~~~~~~~~~~~~~  271 (436)
                      .|..||.+.+...
T Consensus       219 ~y~~WI~~~~~~~  231 (240)
T 2zgc_A          219 PYVSWIRKVTGRS  231 (240)
T ss_dssp             GGHHHHHHHHCCC
T ss_pred             HhHHHHHHHHhhc
Confidence            9999998877643

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=8.6e-47  Score=342.89  Aligned_cols=223  Identities=32%  Similarity=0.613  Sum_probs=152.9

Q ss_pred             CeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCce
Q psy16044         25 PRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSE  104 (436)
Q Consensus        25 ~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~  104 (436)
                      .||+||++|..++|||+|+|+ ..   +  .++|+||||+++||||||||+..         .+.|++|..+........
T Consensus         2 arIvgG~~a~~~~~Pw~v~l~-~~---~--~~~CgGsLIs~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~   66 (240)
T 1sgf_A            2 APPVQSQVDCENSQPWHVAVY-RF---N--KYQCGGVLLDRNWVLTAAHCYND---------KYQVWLGKNNFLEDEPSD   66 (240)
T ss_dssp             -----------CCCTTEEEEE-CT---T--SCCEEEEECSSSEEEECGGGCCS---------CCEEEECC----C-CTTC
T ss_pred             CcccCCeECCCCCcCCEEEEE-eC---C--CeEEEEEEecCCEEEECHHhCCC---------CceEEeCCcccccCCCCc
Confidence            589999999999999999994 21   1  58899999999999999999853         357999988776555556


Q ss_pred             EEEeeeEEEeCCCCC-------------CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCC
Q psy16044        105 VRIPVERIRVHEEFH-------------NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK  171 (436)
Q Consensus       105 ~~~~v~~i~~hp~y~-------------~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~  171 (436)
                      +.+.|+++++||+|+             ...||||||||++|+. ++..++|||||...   ...+..++++|||     
T Consensus        67 ~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~-~~~~v~picL~~~~---~~~~~~~~v~GwG-----  137 (240)
T 1sgf_A           67 QHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPAD-ITDVVKPITLPTEE---PKLGSTCLASGWG-----  137 (240)
T ss_dssp             EEEEEEEEEECTTSCGGGC----CCTTCBCTTCCEEEEESSCCC-CCSSCCCCCCCCSC---CCTTCEEEEC--------
T ss_pred             eEEEEEEEEcCCCCcccccccccccccCCCCCceEEEEeCCcCc-CCCcccccCCCCCC---CCCCCEEEEEecC-----
Confidence            888999999999996             2356777777777666 55566666666532   1234455555555     


Q ss_pred             CCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCC
Q psy16044        172 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG  251 (436)
Q Consensus       172 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~  251 (436)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (240)
T 1sgf_A          138 --------------------------------------------------------------------------------  137 (240)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC-
Q psy16044        252 IRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-  330 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~-  330 (436)
                                                                                                .+... 
T Consensus       138 --------------------------------------------------------------------------~~~~~~  143 (240)
T 1sgf_A          138 --------------------------------------------------------------------------STTPIK  143 (240)
T ss_dssp             ------------------------------------------------------------------------------C-
T ss_pred             --------------------------------------------------------------------------CCCCCC
Confidence                                                                                      33221 


Q ss_pred             CCccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCC
Q psy16044        331 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKS  409 (436)
Q Consensus       331 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~  409 (436)
                      ...+..|+++.+++++.++|+..+..  .+++.|||++...+..+.|.|||||||+++   +  +|+||+||| ..|+..
T Consensus       144 ~~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~~C~~~  216 (240)
T 1sgf_A          144 FKYPDDLQCVNLKLLPNEDCDKAHEM--KVTDAMLCAGEMDGGSYTCEHDSGGPLICD---G--ILQGITSWGPEPCGEP  216 (240)
T ss_dssp             --------CEEEEEECTHHHHTTCSS--BCCTTEEEEEECSSSEEECCCCTTCEEEET---T--EEEEEECCCCSSCCCS
T ss_pred             CCCCccccEEeeeEeCHHHhhhhhCC--CcCCCeEeEccCCCCCCCCCCCCcCcEEEc---c--EEEEEEEECCCCCCCC
Confidence            12255688999999999999987754  468999999876555689999999999983   2  699999999 679877


Q ss_pred             CCCeEEEeCcccHHHHHHHHhhh
Q psy16044        410 GYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       410 ~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      +.|++||||+.|++||+++|+.+
T Consensus       217 ~~p~vyt~V~~~~~WI~~~~~~~  239 (240)
T 1sgf_A          217 TEPSVYTKLIKFSSWIRETMANN  239 (240)
T ss_dssp             SCCEEEEESGGGHHHHHHHHHSC
T ss_pred             CCCeEEEeHHHHHHHHHHHHhcC
Confidence            78999999999999999999754

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.5e-47  Score=373.39  Aligned_cols=249  Identities=31%  Similarity=0.550  Sum_probs=193.7

Q ss_pred             CCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCC-CCCCCcceEEEeccccCCccC-
Q psy16044         24 QPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF-SLPIPELWTAVLGDWDRTEEE-  101 (436)
Q Consensus        24 ~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~-~~~~~~~~~v~~g~~~~~~~~-  101 (436)
                      ..||+||..|..++|||+|+|+....    ..++|+||||+++||||||||+..... .......+.|++|.++..... 
T Consensus       163 ~~RIvgG~~a~~g~~Pw~v~l~~~~~----~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~  238 (424)
T 3nxp_A          163 DGRIVEGSDAEIGMSPWQVMLFRKSP----QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYER  238 (424)
T ss_dssp             SSCCCCCEECCTTSCTTEEEEEETTT----TEEEEEEEESSSSEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCT
T ss_pred             CCeeECCEECCCCCCCCEEEEeecCC----CCccceeEEEcCCEEEEhHHhcCccccccccCcccEEEEeCcccccccCC
Confidence            56999999999999999999976432    168999999999999999999853210 011345789999998776543 


Q ss_pred             CceEEEeeeEEEeCCCCC---CCCCceeEEEeCCCCCCCCCceeeeeecCCCCC--CCCCCCcEEEEecCccCCCCCccc
Q psy16044        102 KSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRAVCLTDADKR--PVNPKQQCVATGWGRVKPKGDLVS  176 (436)
Q Consensus       102 ~~~~~~~v~~i~~hp~y~---~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~--~~~~~~~~~~~GwG~~~~~~~~~~  176 (436)
                      ...+.+.|+++++||+|+   ...||||||||++|+. ++.+|+|||||.....  ....+..|+++|||.+.....   
T Consensus       239 ~~~~~~~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~-~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~---  314 (424)
T 3nxp_A          239 NIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA-FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWT---  314 (424)
T ss_dssp             TTCEEECEEEEEECTTCBTTTTSBTCCEEEEESSCCC-CCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHH---
T ss_pred             CceeEEEEEEEEeCCCCCCCCCCcCCeEEEEecCccc-cCCcccccCCCCcccccccccCCCeEEEEecCCCCccCc---
Confidence            235667899999999997   3679999999999999 7888999999874210  122456677777775431000   


Q ss_pred             cceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCccccc
Q psy16044        177 KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSH  256 (436)
Q Consensus       177 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~  256 (436)
                                                                            .                         
T Consensus       315 ------------------------------------------------------~-------------------------  315 (424)
T 3nxp_A          315 ------------------------------------------------------A-------------------------  315 (424)
T ss_dssp             ------------------------------------------------------H-------------------------
T ss_pred             ------------------------------------------------------c-------------------------
Confidence                                                                  0                         


Q ss_pred             ccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCcccc
Q psy16044        257 RQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK  336 (436)
Q Consensus       257 v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~  336 (436)
                                                                                             ......+..
T Consensus       316 -----------------------------------------------------------------------~~~~~~~~~  324 (424)
T 3nxp_A          316 -----------------------------------------------------------------------NVGKGQPSV  324 (424)
T ss_dssp             -----------------------------------------------------------------------C----CCSB
T ss_pred             -----------------------------------------------------------------------ccCCCCCcc
Confidence                                                                                   000112567


Q ss_pred             ceEEEEEeeCccccccccCCCccCCCCceecccCC---CCCCCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCCCCC
Q psy16044        337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD---GFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKSGYP  412 (436)
Q Consensus       337 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~---~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~~~p  412 (436)
                      |+++.+++++.+.|+..+..  .++++||||+...   ...+.|+|||||||+|.. .+++|+|+||+|||.+|+..+.|
T Consensus       325 L~~~~v~ii~~~~C~~~~~~--~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~G~~C~~~~~p  402 (424)
T 3nxp_A          325 LQVVNLPIVERPVCKDSTRI--RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKY  402 (424)
T ss_dssp             CEEEEEEBCCHHHHHHTCSS--CCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECCSSCTTTCCSC
T ss_pred             ceEEEeeEEcHHHhhhhccC--cCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEeCCCCCCCCCC
Confidence            99999999999999988754  5789999998643   234899999999999986 37899999999999999988889


Q ss_pred             eEEEeCcccHHHHHHHHhhh
Q psy16044        413 DVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       413 ~v~t~V~~~~~WI~~~i~~~  432 (436)
                      +|||||+.|++||+++|+..
T Consensus       403 gVyT~Vs~y~~WI~~~i~~~  422 (424)
T 3nxp_A          403 GFYTHVFRLKKWIQKVIDQF  422 (424)
T ss_dssp             EEEEECTTCHHHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHh
Confidence            99999999999999999864

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=3.1e-46  Score=343.64  Aligned_cols=246  Identities=31%  Similarity=0.560  Sum_probs=190.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCC-CCCCCcceEEEeccccCCccCC-ce
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF-SLPIPELWTAVLGDWDRTEEEK-SE  104 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~-~~~~~~~~~v~~g~~~~~~~~~-~~  104 (436)
                      |+||++|.+++|||+|+|+.....    .++|+||||+++||||||||+..... .......+.|++|..+...... ..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~----~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~   76 (259)
T 3rm2_H            1 IVEGSDAEIGMSPWQVMLFRKSPQ----ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIE   76 (259)
T ss_dssp             CBSCEECCTTSSTTEEEEEEETTE----EEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTC
T ss_pred             CCCCEECCCCCcCCEEEEEECCCC----ceEEEEEEEeCCEEEEcHHhCcccccccccCcccEEEEECcccccccccCcc
Confidence            789999999999999999765321    58999999999999999999853211 1113456889999987754433 34


Q ss_pred             EEEeeeEEEeCCCCC---CCCCceeEEEeCCCCCCCCCceeeeeecCCCCC--CCCCCCcEEEEecCccCCCCCccccce
Q psy16044        105 VRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRAVCLTDADKR--PVNPKQQCVATGWGRVKPKGDLVSKLR  179 (436)
Q Consensus       105 ~~~~v~~i~~hp~y~---~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~--~~~~~~~~~~~GwG~~~~~~~~~~~l~  179 (436)
                      +...|+++++||+|+   ...||||||||++|+. ++.+++|||||.....  ....+..++++|||.+......     
T Consensus        77 ~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~-----  150 (259)
T 3rm2_H           77 KISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA-FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA-----  150 (259)
T ss_dssp             EEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCC-CBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC--------
T ss_pred             eeeEEEEEEECCCCCCCCCCCCcEEEEEeCCceE-cCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCc-----
Confidence            555699999999997   3578999999999999 7788999999874211  1235677777888754311000     


Q ss_pred             eeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccc
Q psy16044        180 QIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQP  259 (436)
Q Consensus       180 ~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~  259 (436)
                                                                         .                            
T Consensus       151 ---------------------------------------------------~----------------------------  151 (259)
T 3rm2_H          151 ---------------------------------------------------N----------------------------  151 (259)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------c----------------------------
Confidence                                                               0                            


Q ss_pred             eecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceE
Q psy16044        260 RLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ  339 (436)
Q Consensus       260 ~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~  339 (436)
                                                                                           .....+..|++
T Consensus       152 ---------------------------------------------------------------------~~~~~~~~l~~  162 (259)
T 3rm2_H          152 ---------------------------------------------------------------------VGKGQPSVLQV  162 (259)
T ss_dssp             ------------------------------------------------------------------------CCCSBCEE
T ss_pred             ---------------------------------------------------------------------ccccccccceE
Confidence                                                                                 00111457899


Q ss_pred             EEEEeeCccccccccCCCccCCCCceecccCC---CCCCCccCCCCceeeeEec-CCcEEEEEEEEecCCCCCCCCCeEE
Q psy16044        340 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLD---GFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGCAKSGYPDVY  415 (436)
Q Consensus       340 ~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~---~~~~~c~gdsGgpl~~~~~-~~~~~l~Gi~S~~~~c~~~~~p~v~  415 (436)
                      +.+++++.+.|+..+..  .++++|||++...   ...+.|.|||||||+|... +++|+|+||+|||.+|+..+.|++|
T Consensus       163 ~~~~~~~~~~C~~~~~~--~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~C~~~~~p~vy  240 (259)
T 3rm2_H          163 VNLPIVERPVCKDSTRI--RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY  240 (259)
T ss_dssp             EEEEBCCHHHHHHTCSS--CCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEE
T ss_pred             EEEEEeCHHHhhhhhcc--cCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEECCCCCCCCCCeEE
Confidence            99999999999988754  5789999997542   2348999999999999863 7899999999999999987889999


Q ss_pred             EeCcccHHHHHHHHhhh
Q psy16044        416 TKLSFYLPWIRKQINIA  432 (436)
Q Consensus       416 t~V~~~~~WI~~~i~~~  432 (436)
                      |||+.|++||+++|++.
T Consensus       241 t~V~~~~~WI~~~i~~~  257 (259)
T 3rm2_H          241 THVFRLKKWIQKVIDQF  257 (259)
T ss_dssp             EETGGGHHHHHHHHHHH
T ss_pred             EEHHHhHHHHHHHHHHc
Confidence            99999999999999864

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=1.5e-46  Score=340.69  Aligned_cols=221  Identities=30%  Similarity=0.566  Sum_probs=171.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.+|.+++|||+|+|+..+      .++|+||||+++||||||||+.         ..+.|++|..++.......+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGsLIs~~~VLTAAHC~~---------~~~~v~~G~~~~~~~~~~~~~   65 (237)
T 1gvz_A            1 IIGGWECEKHSKPWQVAVYHQG------HFQCGGVLVHPQWVLTAAHCMS---------DDYQIWLGRHNLSKDEDTAQF   65 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGCC---------SSCEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCeEEEEeeCC------ceEEEeEEeeCCEEEEcHHhCC---------CCCeEEEeecccccCCCCceE
Confidence            6899999999999999997542      5889999999999999999984         246899999887766666788


Q ss_pred             EeeeEEEeCCCCCC--C-----------CCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC
Q psy16044        107 IPVERIRVHEEFHN--Y-----------HHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD  173 (436)
Q Consensus       107 ~~v~~i~~hp~y~~--~-----------~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~  173 (436)
                      +.|.++++||+|+.  .           .||||||||++|+. ++..++|||||.                         
T Consensus        66 ~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~-~~~~v~picLp~-------------------------  119 (237)
T 1gvz_A           66 HQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPAR-ITDAVKILDLPT-------------------------  119 (237)
T ss_dssp             ECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCC-CBTTBCCCCCCS-------------------------
T ss_pred             EEeeeEecCCccCcccccccccccccccCCceEEEEeCCCcc-cCCcEeeeECCC-------------------------
Confidence            99999999999862  2           45555555555555 344455555544                         


Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcc
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR  253 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~  253 (436)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (237)
T 1gvz_A          120 --------------------------------------------------------------------------------  119 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCC-CCCC
Q psy16044        254 YSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK-PKGD  332 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~-~~~~  332 (436)
                                                                            ...   ..++.|.++|||.+. ....
T Consensus       120 ------------------------------------------------------~~~---~~~~~~~v~GwG~~~~~~~~  142 (237)
T 1gvz_A          120 ------------------------------------------------------QEP---KLGSTCYTSGWGLISTFTNR  142 (237)
T ss_dssp             ------------------------------------------------------SCC---CTTCEEEEEEEECSCTTTCS
T ss_pred             ------------------------------------------------------CCC---CCCCEEEEECCCcccCCCCC
Confidence                                                                  321   234455555665542 2223


Q ss_pred             ccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCC
Q psy16044        333 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGY  411 (436)
Q Consensus       333 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~  411 (436)
                      .+..|+++.+++++.++|+..+..  .+++.|||++...+..+.|.|||||||+++   +  +|+||+|||. +|+..+.
T Consensus       143 ~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~~C~~~~~  215 (237)
T 1gvz_A          143 GSGTLQCVELRLQSNEKCARAYPE--KMTEFVLCATHRDDSGSICLGDSGGALICD---G--VFQGITSWGYSECADFND  215 (237)
T ss_dssp             EEEEEEEEEEEEECGGGGCSSCGG--GCCTTEEEEECSSTTCEECGGGTTCEEEET---T--EEEEEECCCSSSCEETTT
T ss_pred             CCCccEEEEEeEeChhHhhhhhhh--cCCCceEEEeeCCCCCccCCCCccCcEeeC---C--EEEEEEEeCCCCCCCCCC
Confidence            456789999999999999988754  478999999876666689999999999984   2  5999999997 7986678


Q ss_pred             CeEEEeCcccHHHHHHHHhhh
Q psy16044        412 PDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       412 p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      |++||||++|++||+++|+++
T Consensus       216 p~vyt~V~~~~~WI~~~~~~~  236 (237)
T 1gvz_A          216 NFVFTKVMPHKKWIKETIEKN  236 (237)
T ss_dssp             SCCEEESGGGHHHHHHHHHHH
T ss_pred             CcEEEEHHHHHHHHHHHHhcc
Confidence            999999999999999999864

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=3.7e-46  Score=335.01  Aligned_cols=220  Identities=28%  Similarity=0.480  Sum_probs=186.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+.....  . .++|+||||+++||||||||+..         .+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--~-~~~CgGsLI~~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~~~   68 (224)
T 1cgh_A            1 IIGGRESRPHSRPYMAYLQIQSPA--G-QSRCGGFLVREDFVLTAAHCWGS---------NINVTLGAHNIQRRENTQQH   68 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESTTT--T-SCEEEEEEEETTEEEECGGGCCS---------SEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEEECCC--C-CeEEEEEEeeCCEEEEhHHhCCC---------CCEEEEeecccCCCCCccEE
Confidence            689999999999999999875321  1 58999999999999999999853         36899999887765556788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++..++|||||.... ....+..++++|||.+. .+..+..|++..++
T Consensus        69 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~  145 (224)
T 1cgh_A           69 ITARRAIRHPQYNQRTIQNDIMLLQLSRRVR-RNRNVNPVALPRAQE-GLRPGTLCTVAGWGRVS-MRRGTDTLREVQLR  145 (224)
T ss_dssp             EEEEEEEECTTCBTTTTBSCCEEEEESSCCC-CBTTBCCCBCCCTTC-CCCTTCEEEEEESCCSS-SSCCCSBCEEEEEE
T ss_pred             EEEEEEEcCCCCCCCCCcCCEEEEEECCCCc-CCCceEeeECCCCCC-CCCCCCEEEEEECCcCC-CCCCCCcceEEEEE
Confidence            9999999999997  4689999999999999 778899999998643 34578999999999887 44556789999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.++|...+..  ...+.|||++...+..+.|.|||||||++++     +|+||+|||..++..+.+|++|..|..||
T Consensus       146 i~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~~~~p~vyt~V~~~~~WI  218 (224)
T 1cgh_A          146 VQRDRQCLRIFGS--YDPRRQICVGDRRERKAAFKGDSGGPLLCNN-----VAHGIVSYGKSSGVPPEVFTRVSSFLPWI  218 (224)
T ss_dssp             BCCHHHHHHHCTT--CCTTTEEEECCTTSCCBCCTTCTTCEEEETT-----EEEEEEEECCTTCCSCEEEEEGGGGHHHH
T ss_pred             eeCHHHHHHHhCc--CCCcceEeeccCCCCCeEeeCCCccceEEcc-----EEEEEEEEECCCCCCCeEEEEHHHhHHHH
Confidence            9999999988743  2345699999876668999999999999842     79999999985456688999999999999


Q ss_pred             cccc
Q psy16044        265 KESI  268 (436)
Q Consensus       265 ~~~~  268 (436)
                      .+.+
T Consensus       219 ~~~~  222 (224)
T 1cgh_A          219 RTTM  222 (224)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8754

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=3.9e-46  Score=337.22  Aligned_cols=223  Identities=30%  Similarity=0.503  Sum_probs=186.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+..        ..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAHC~~~--------~~~~v~~G~~~~~~~~~~~~~   66 (234)
T 1orf_A            1 IIGGNEVTPHSRPYMVLLSLDR------KTICAGALIAKDWVLTAAHCNLN--------KRSQVILGAHSITREEPTKQI   66 (234)
T ss_dssp             CBSCEECCTTSSTTEEEEECSS------SCEEEEEEEETTEEEECTTCCCC--------TTCEEEESCSBSSSCCTTCEE
T ss_pred             CCCCEECCCCCCCeEEEEccCC------ceEEEEEEeeCCEEEEchhcCCC--------CCceEEEeccccCcCCCceEE
Confidence            7899999999999999998642      68899999999999999999864        346899999887665556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++.+++|||||... .....+..++++|||.+...+..+..|+++.++
T Consensus        67 ~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~  144 (234)
T 1orf_A           67 MLVKKEFPYPCYDPATREGDLKLLQLTEKAK-INKYVTILHLPKKG-DDVKPGTMCQVAGWGRTHNSASWSDTLREVEIT  144 (234)
T ss_dssp             ECEEEEEECTTCCTTTCTTCCEEEEESSCCC-CSSSSCCCCCCSSC-CCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEE
T ss_pred             EEEEEEEcCCCCCCCCCCCCEEEEEECCcCc-cCCCeeeeecCCCc-CCCCCCCEEEEEECCcCCCCCCccccceEeEEE
Confidence            9999999999997  4789999999999999 78889999999853 334578899999999988666667889999999


Q ss_pred             ccchhhhh--hhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcC-CCCCC---Cccccccc
Q psy16044        185 LHNISVCR--DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GYCGV---GIRYSHRQ  258 (436)
Q Consensus       185 ~~~~~~C~--~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~-~~C~~---~~~y~~v~  258 (436)
                      +++.+.|+  ..+.......+.||||+...+..++|.|||||||+++   +  +|+||+|||. ..|+.   +.+|++|.
T Consensus       145 ~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~~~C~~~~~p~vyt~v~  219 (234)
T 1orf_A          145 IIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE---G--VFRGVTSFGLENKCGDPRGPGVYILLS  219 (234)
T ss_dssp             EECHHHHTSTTTTTTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEET---T--EEEEEEEECCTTCTTCTTSCEEEEECC
T ss_pred             eeCHHHcCCccccccCCccCCCEEEecCCCCCCcCCCCCCCCeEEEC---C--EEEEEEEEcCCCCCCCCCCCCEEEEch
Confidence            99999998  4443111233489999976666899999999999984   2  6999999998 24754   68999999


Q ss_pred             -ceecCCccccCC
Q psy16044        259 -PRLINGKESIRG  270 (436)
Q Consensus       259 -~~~~~~~~~~~~  270 (436)
                       .|..||.+.+..
T Consensus       220 ~~~~~WI~~~~~~  232 (234)
T 1orf_A          220 KKHLNWIIMTIKG  232 (234)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHh
Confidence             999999877653

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=8e-46  Score=332.68  Aligned_cols=220  Identities=33%  Similarity=0.610  Sum_probs=178.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+. +     ..++|+||||+++||||||||+.         ..+.|++|..+...  ...+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~-----~~~~CgGtLI~~~~VLTAAHC~~---------~~~~v~~G~~~~~~--~~~~~   63 (224)
T 2qxi_A            1 IIDGAPCARGSHPWQVALLS-G-----NQLHCGGVLVNERWVLTAAHCKM---------NEYTVHLGSDTLGD--RRAQR   63 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEE-T-----TEEEEEEEEEETTEEEECGGGCC---------SCEEEEESCSBTTC--TTSEE
T ss_pred             CCCCeECCCCCCCCEEEEee-C-----CCeEEEEEEecCCEEEEhHHcCC---------CCcEEEEeeeecCC--CccEE
Confidence            68999999999999999952 1     13489999999999999999983         34689999877652  33477


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++..++|||||...   ...+..++++|||.+..              
T Consensus        64 ~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picL~~~~---~~~~~~~~v~GwG~~~~--------------  125 (224)
T 2qxi_A           64 IKASKSFRHPGYSTQTHVNDLMLVKLNSQAR-LSSMVKKVRLPSRC---EPPGTTCTVSGWGTTTS--------------  125 (224)
T ss_dssp             EEECEEEECTTCCTTTCTTCCEEEECSSCCC-CBTTBCCCCCCSSC---CCTTCEEEEEESSCSSS--------------
T ss_pred             EEEEEEEECCCCCCCCCcCcEEEEEeCCCCc-CCCceeeEECCCCC---CCCCCEEEEEeCCccCC--------------
Confidence            8999999999997  4679999999999999 67789999998742   23566677777764320              


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (224)
T 2qxi_A          126 --------------------------------------------------------------------------------  125 (224)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                      .....+..|+++.+++
T Consensus       126 ----------------------------------------------------------------~~~~~~~~L~~~~~~~  141 (224)
T 2qxi_A          126 ----------------------------------------------------------------PDVTFPSDLMCVDVKL  141 (224)
T ss_dssp             ----------------------------------------------------------------SSCCCCSBCEEEEEEE
T ss_pred             ----------------------------------------------------------------CCCCCChhheEEEeee
Confidence                                                                            0011245688999999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~~  423 (436)
                      ++.++|+..+..  .+.+.|||++...+..+.|.|||||||+++   +  +|+||+||| ..|+..+.|++||||++|++
T Consensus       142 ~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~  214 (224)
T 2qxi_A          142 ISPQDCTKVYKD--LLENSMLCAGIPDSKKNACNGDSGGPLVCR---G--TLQGLVSWGTFPCGQPNDPGVYTQVCKFTK  214 (224)
T ss_dssp             ECHHHHHHHHGG--GCCTTEEEEECTTCCCBCCTTCTTCEEEET---T--EEEEEEEECCSSSCCTTCCEEEEEGGGSHH
T ss_pred             cCHHHhhHHhcC--cCCCCeEEecCCCCCCccCCCCccccEEEC---C--EEEEEEEeCCCCCCCCCCCeEEEEHHHHHH
Confidence            999999988754  468999999876566789999999999994   2  599999999 68987778999999999999


Q ss_pred             HHHHHHhhh
Q psy16044        424 WIRKQINIA  432 (436)
Q Consensus       424 WI~~~i~~~  432 (436)
                      ||+++|+++
T Consensus       215 WI~~~~~~~  223 (224)
T 2qxi_A          215 WINDTMKKH  223 (224)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhcc
Confidence            999999753

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=1.2e-45  Score=334.37  Aligned_cols=219  Identities=34%  Similarity=0.665  Sum_probs=169.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+.        .++|+||||+++||||||||+.         ..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~--------~~~CgGsLIs~~~VLTAAHC~~---------~~~~v~~G~~~~~~~~~~~~~   63 (235)
T 1ton_A            1 IVGGYKCEKNSQPWQVAVIN--------EYLCGGVLIDPSWVITAAHCYS---------NNYQVLLGRNNLFKDEPFAQR   63 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES--------SSEEEEEEEETTEEEECGGGCC---------SCCEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCcCcEEEEcc--------CCeEEEEEecCCEEEEcHHhCC---------CCcEEEeCcccccCCCCcceE
Confidence            68999999999999999974        1789999999999999999984         246899999887655555688


Q ss_pred             EeeeEEEeCCCCCC-------------CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC
Q psy16044        107 IPVERIRVHEEFHN-------------YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD  173 (436)
Q Consensus       107 ~~v~~i~~hp~y~~-------------~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~  173 (436)
                      +.|+++++||+|+.             ..+|||||||++|+. ++..++|||||.                         
T Consensus        64 ~~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~-~~~~v~picL~~-------------------------  117 (235)
T 1ton_A           64 RLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPAD-ITGGVKVIDLPT-------------------------  117 (235)
T ss_dssp             ECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCC-CCSSCCCCCCCC-------------------------
T ss_pred             EEEEEEEeCCCCcccccccccccccCCCcCCEEEEEcCCccc-cCCcceeeeCCC-------------------------
Confidence            89999999999953             245555555555555 444555555554                         


Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcc
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR  253 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~  253 (436)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (235)
T 1ton_A          118 --------------------------------------------------------------------------------  117 (235)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC-CC
Q psy16044        254 YSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GD  332 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~-~~  332 (436)
                                                                            ...   ..++.|.++|||.+... ..
T Consensus       118 ------------------------------------------------------~~~---~~~~~~~v~GwG~~~~~~~~  140 (235)
T 1ton_A          118 ------------------------------------------------------KEP---KVGSTCLASGWGSTNPSEMV  140 (235)
T ss_dssp             ------------------------------------------------------SCC---CTTCEEEEEESSCSSSSSCC
T ss_pred             ------------------------------------------------------CCC---CCCCEEEEEecCCCCCCCCc
Confidence                                                                  221   23444555555544322 22


Q ss_pred             ccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCC
Q psy16044        333 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGY  411 (436)
Q Consensus       333 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~  411 (436)
                      .+..|+++.+++++.++|+..+..  .+++.|||++...+..+.|.|||||||+++   +  +|+||+||| ..|+..+.
T Consensus       141 ~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~~~C~~~~~  213 (235)
T 1ton_A          141 VSHDLQCVNIHLLSNEKCIETYKD--NVTDVMLCAGEMEGGKDTCAGDSGGPLICD---G--VLQGITSGGATPCAKPKT  213 (235)
T ss_dssp             CCSBCEEEEEEEECGGGCGGGGST--TGGGGEEEEECTTCSCBCCTTCTTCEEEET---T--EEEEEECCCCSSCSCTTC
T ss_pred             cCccceEEEEEEeCHHHHHHHhcC--cCCCCeEeeccCCCCCcCCCCCCccccEEC---C--EEEEEEeeCCCCCCCCCC
Confidence            356799999999999999998865  468899999876566789999999999983   2  699999999 57987778


Q ss_pred             CeEEEeCcccHHHHHHHHhhh
Q psy16044        412 PDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       412 p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      |++||||+.|++||+++|+++
T Consensus       214 p~vyt~V~~~~~WI~~~~~~~  234 (235)
T 1ton_A          214 PAIYAKLIKFTSWIKKVMKEN  234 (235)
T ss_dssp             CEEEEEGGGGHHHHHHHHHHC
T ss_pred             CeEEEEHHHHHHHHHHHHccC
Confidence            999999999999999999764

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=4.1e-46  Score=337.68  Aligned_cols=227  Identities=30%  Similarity=0.588  Sum_probs=189.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+....  +...++|+||||+++||||||||+..       ...+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~--~~~~~~CgGtLIs~~~VLTAAHC~~~-------~~~~~V~~G~~~~~~~~~~~~~   71 (236)
T 1elt_A            1 VVGGRVAQPNSWPWQISLQYKSG--SSYYHTCGGSLIRQGWVMTAAHCVDS-------ARTWRVVLGEHNLNTNEGKEQI   71 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEET--TEEEEEEEEEEEETTEEEECHHHHSS-------CCCEEEEESCSBTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCCEEEEEEecC--CceeeEEEEEEEeCCEEEECHHhhCC-------cCceEEEEccccCCCCCCCcEE
Confidence            68999999999999999987532  11248899999999999999999864       2567899999887766556688


Q ss_pred             EeeeEEEeCCCCCC--C--CCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFHN--Y--HHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~~--~--~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.|+++++||+|+.  .  .+|||||||++|+. ++..++|||||.... ....+..++++|||.+...+..+..|++..
T Consensus        72 ~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~-~~~~v~picL~~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  149 (236)
T 1elt_A           72 MTVNSVFIHSGWNSDDVAGGYDIALLRLNTQAS-LNSAVQLAALPPSNQ-ILPNNNPCYITGWGKTSTGGPLSDSLKQAW  149 (236)
T ss_dssp             ECEEEEEECTTCCTTCGGGCCCCEEEEESSCCC-CSSSCCCCCCCCTTC-CCCTTCCEEEEESCCSSTTCCCCSBCEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCCccEEEEECCCCCc-cCCcEEeccCCCccc-cCCCCCEEEEEeCCCcCCCCCcChhheEeE
Confidence            99999999999973  3  78999999999999 778899999998533 345788999999999876666678899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcC-CCCC---CCccccccc
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GYCG---VGIRYSHRQ  258 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~-~~C~---~~~~y~~v~  258 (436)
                      +++++.+.|+..+.......+.|||++.. + .+.|.|||||||++.. +++|+|+||+|||. ..|+   .+.+|++|.
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~-~-~~~C~GDSGgPL~~~~-~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~  226 (236)
T 1elt_A          150 LPSVDHATCSSSGWWGSTVKTTMVCAGGG-A-NSGCNGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVS  226 (236)
T ss_dssp             CCEECHHHHTSTTTTGGGSCTTEEEECCS-S-CBCCTTCTTCEEEEEE-TTEEEEEEEEEECCSSCTTCTTCCEEEEEGG
T ss_pred             eeecCHHHhccccccCCcCCcceEEecCC-C-CccCCCCCCCeeEEEE-CCEEEEEEEEEEeCCCCCCCCCCCeEEEEHH
Confidence            99999999987643223456799999843 3 7899999999999985 78999999999995 2465   468999999


Q ss_pred             ceecCCccc
Q psy16044        259 PRLINGKES  267 (436)
Q Consensus       259 ~~~~~~~~~  267 (436)
                      .|..||.+.
T Consensus       227 ~~~~WI~~~  235 (236)
T 1elt_A          227 AYISWMNGI  235 (236)
T ss_dssp             GGHHHHHHH
T ss_pred             HhHHHHHhh
Confidence            999999764

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=5.4e-47  Score=344.91  Aligned_cols=230  Identities=26%  Similarity=0.430  Sum_probs=184.8

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|..        .++|+||||+++||||||||+............+.|++|..+..... ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~--------~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~-~~~~   71 (242)
T 2qy0_B            1 IIGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELM-KLGN   71 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEES--------SSEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHH-HHCC
T ss_pred             CCCCEECCCCCCCcEEEEcc--------CCCEEEEEEeCCEEEEcHHhccccccccCCCceEEEEEeeccccccc-cccc
Confidence            78999999999999999964        35799999999999999999975322222345678999986643221 1245


Q ss_pred             EeeeEEEeCCCCC-----CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceee
Q psy16044        107 IPVERIRVHEEFH-----NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQI  181 (436)
Q Consensus       107 ~~v~~i~~hp~y~-----~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~  181 (436)
                      +.|+++++||+|+     ...||||||||++|+. ++.+++|||||... .....+..++++|||.+...  .+..|+++
T Consensus        72 ~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~--~~~~L~~~  147 (242)
T 2qy0_B           72 HPIRRVSVHPDYRQDESYNFEGDIALLELENSVT-LGPNLLPICLPDND-TFYDLGLMGYVSGFGVMEEK--IAHDLRFV  147 (242)
T ss_dssp             CCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCC-CBTTBCCCBCCCSG-GGGCTTCEEEEEECCCCSSS--CCSBCEEE
T ss_pred             eeEEEEEECCCCccCcCCCCCCcEEEEEECCCCc-CCCCcceeecCCCc-cccCCCCeEEEEeeccCCCc--CCccceEE
Confidence            6899999999997     3578999999999999 77889999999753 23456889999999988643  56789999


Q ss_pred             eeeccchhhhhhhcCC---CcCCcCCeEEeccCCCCCCCccCCCCCeeeeE-ecCCcEEEEEEEeEcCCCCCCCcccccc
Q psy16044        182 RVPLHNISVCRDKYGD---SVELHGGHLCGGQLDGFSGACIGDSGGPLQCS-LKDGRWYLAGITSFGSGYCGVGIRYSHR  257 (436)
Q Consensus       182 ~~~~~~~~~C~~~~~~---~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~-~~~~~~~l~GI~S~g~~~C~~~~~y~~v  257 (436)
                      .+++++.+.|+..+..   .....+.||||+...+..++|.|||||||++. ..+++|+|+||+|||.+|...+.+|++|
T Consensus       148 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~vyt~V  227 (242)
T 2qy0_B          148 RLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKV  227 (242)
T ss_dssp             EEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSSSCEEEEEG
T ss_pred             EEEEeCHHHHHHHhccccccccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCcCCCCcEEEEH
Confidence            9999999999987632   12356799999987666899999999999996 3578999999999998744457899999


Q ss_pred             cceecCCccccC
Q psy16044        258 QPRLINGKESIR  269 (436)
Q Consensus       258 ~~~~~~~~~~~~  269 (436)
                      .+|..||.+.+.
T Consensus       228 ~~y~~WI~~~~~  239 (242)
T 2qy0_B          228 LNYVDWIKKEME  239 (242)
T ss_dssp             GGGHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988765

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=9.6e-47  Score=358.85  Aligned_cols=236  Identities=25%  Similarity=0.497  Sum_probs=183.7

Q ss_pred             CCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEE
Q psy16044         12 RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAV   91 (436)
Q Consensus        12 ~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~   91 (436)
                      +.||+.........||+||.+|..++|||+|+|.         .++|+||||+++||||||||+...       ....|+
T Consensus        68 ~~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~---------~~~CgGsLIs~~~VLTAAHC~~~~-------~~~~v~  131 (333)
T 1elv_A           68 PVCGVPREPFEEKQRIIGGSDADIKNFPWQVFFD---------NPWAGGALINEYWVLTAAHVVEGN-------REPTMY  131 (333)
T ss_dssp             ECCSCCSSCC-----CBTCEECCGGGSTTEEEEE---------TTEEEEEEEETTEEEECHHHHTTC-------SSCCEE
T ss_pred             CCcCCCCCcccccceeecCcccCCCCcCeEEEec---------CCceeEEEecCCEEEehhheeCCC-------CCCeEE
Confidence            4799765544456799999999999999999993         237999999999999999999653       123788


Q ss_pred             eccccCCccCCceEEEee---eEEEeCCCCCC---------CCCceeEEEeCCCCCCCCCceeeeeecCCCCC-CCCCCC
Q psy16044         92 LGDWDRTEEEKSEVRIPV---ERIRVHEEFHN---------YHHDIALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQ  158 (436)
Q Consensus        92 ~g~~~~~~~~~~~~~~~v---~~i~~hp~y~~---------~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~-~~~~~~  158 (436)
                      +|.++...  ...+.+.|   +++++||+|+.         ..||||||||++|+. ++.+++|||||..... .+..+.
T Consensus       132 ~G~~~~~~--~~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~-~~~~v~PicLp~~~~~~~~~~g~  208 (333)
T 1elv_A          132 VGSTSVQT--SRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVK-MGPTVSPICLPGTSSDYNLMDGD  208 (333)
T ss_dssp             CSCSBCC---------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCC-CBTTBCCCBCCCSSGGGCCCTTC
T ss_pred             Eeeeeccc--CccceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCCCCc-CCCcccceecCCCcccccccCCc
Confidence            99876632  22344555   99999999972         579999999999999 7888999999975322 244688


Q ss_pred             cEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCC-------cCCcCCeEEeccCCCCCCCccCCCCCeeeeEec
Q psy16044        159 QCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS-------VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK  231 (436)
Q Consensus       159 ~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~-------~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~  231 (436)
                      .++++|||.+... ..+..|+++.+.+++.+.|+..+...       ...+++||||+... +.++|+|||||||++...
T Consensus       209 ~~~v~GWG~t~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~GDSGGPL~~~~~  286 (333)
T 1elv_A          209 LGLISGWGRTEKR-DRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDP  286 (333)
T ss_dssp             EEEEEESCCCSSC-SSCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECS
T ss_pred             EEEEEECcCcCCC-CcCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcCcCCCceEEEEC
Confidence            9999999988753 45678999999999999999876432       24567999998766 589999999999999743


Q ss_pred             -CC-cEEEEEEEeEcCCCCCCCcccccccceecCCccccC
Q psy16044        232 -DG-RWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       232 -~~-~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~~~~~~  269 (436)
                       ++ +|+|+||+|||.+ |+.+.+|++|..|..||.+.+.
T Consensus       287 ~~~~~~~l~GIvS~g~~-C~~~~vyt~V~~y~~WI~~~~~  325 (333)
T 1elv_A          287 NDKTKFYAAGLVSWGPQ-CGTYGLYTRVKNYVDWIMKTMQ  325 (333)
T ss_dssp             SCTTCEEEEEEEEECSS-TTSEEEEEEGGGGHHHHHHHHH
T ss_pred             CCCcEEEEEEEEeeCCC-CCCCcEEeEHHHHHHHHHHHHh
Confidence             34 8999999999987 6668999999999999987654

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=6.6e-46  Score=334.16  Aligned_cols=223  Identities=27%  Similarity=0.475  Sum_probs=186.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+.....  . .++|+||||+++||||||||+..         .+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--~-~~~CgGtLI~~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~~~   68 (227)
T 1iau_A            1 IIGGHEAKPHSRPYMAYLMIWDQK--S-LKRCGGFLIRDDFVLTAAHCWGS---------SINVTLGAHNIKEQEPTQQF   68 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSS--C-EEEEEEEEEETTEEEECGGGCCS---------EEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCeECCCCCcCcEEEEEEECCC--C-ceEEEEEEEcCCEEEECHHhCCC---------ceEEEEccccccCCCCccEE
Confidence            789999999999999999875321  1 48999999999999999999853         37899999887766566788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++..++|||||... ..+..+..++++|||.+...+..+..|+++.++
T Consensus        69 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picLp~~~-~~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~  146 (227)
T 1iau_A           69 IPVKRPIPHPAYNPKNFSNDIMLLQLERKAK-RTRAVQPLRLPSNK-AQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMT  146 (227)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCCCCCTT-CCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEE
T ss_pred             EEEEEEECCCCCCCCCCCCCeEEEEECCccc-CCCceecccCCCCC-CCCCCCCEEEEEEcccCCCCCCcCceeeEeeee
Confidence            9999999999997  4689999999999999 77889999999853 334578999999999988666677889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.+.|+..+.... ..+.|+|++...+..+.|.|||||||++++     +|+||+|||-+....+.+|++|..|..||
T Consensus       147 i~~~~~C~~~~~~~~-~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~gc~~~~~p~vyt~v~~~~~WI  220 (227)
T 1iau_A          147 VQEDRKCESDLRHYY-DSTIELCVGDPEIKKTSFKGDSGGPLVCNK-----VAQGIVSYGRNNGMPPRACTKVSSFVHWI  220 (227)
T ss_dssp             BCCHHHHHHHTTTTC-CTTTEEEESCTTSCCBCCTTCTTSEEEETT-----EEEEEEEEECTTSCSCEEEEEGGGGHHHH
T ss_pred             eechHHhhhHhcccc-CCCcEEEeECCCCCCeeeecCCCchheEee-----EEEEEEeEecCCCCCCeEEEEHHHHHHHH
Confidence            999999998875432 334599999877668999999999999842     79999999921113578999999999999


Q ss_pred             ccccC
Q psy16044        265 KESIR  269 (436)
Q Consensus       265 ~~~~~  269 (436)
                      .+.+.
T Consensus       221 ~~~~~  225 (227)
T 1iau_A          221 KKTMK  225 (227)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87653

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=2.6e-46  Score=362.81  Aligned_cols=239  Identities=31%  Similarity=0.517  Sum_probs=195.2

Q ss_pred             CCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEe
Q psy16044         13 DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVL   92 (436)
Q Consensus        13 ~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~   92 (436)
                      .||.     ....||+||++|..++|||+|+|++...  +...++|+||||+++||||||||+...     ....+.|++
T Consensus       110 ~CG~-----~~~~rIvgG~~a~~~e~Pw~v~L~~~~~--g~~~~~CGGsLIs~~~VLTAAHCv~~~-----~~~~~~V~l  177 (408)
T 2xxl_A          110 DCGN-----FLSQRVSNGYEVKLSSRPWMALLRYQQF--GESRFLCGGAMISERYILTAAHCVHGL-----QNDLYEIRL  177 (408)
T ss_dssp             CCSC-----CCCCCCCSSCBCCTTSSTTEEEEEEECS--SSEEEEEEEEEEETTEEEECGGGTTTC-----TTTEEEEEE
T ss_pred             ccCC-----CCCCceECCEECCCCCCCcEEEEEeecC--CceeEEEEEEEEECCEEEEcHHhcCCC-----CCceEEEEe
Confidence            7992     2357999999999999999999987542  222689999999999999999999653     235689999


Q ss_pred             ccccCCccC------------CceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCC--CCCCC
Q psy16044         93 GDWDRTEEE------------KSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADK--RPVNP  156 (436)
Q Consensus        93 g~~~~~~~~------------~~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~--~~~~~  156 (436)
                      |.++.....            ...+.+.|+++++||+|+  ...||||||||++|+. ++.+++|||||....  .....
T Consensus       178 G~~~~~~~~~~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~-~~~~V~PICLp~~~~~~~~~~~  256 (408)
T 2xxl_A          178 GEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVP-FQKHIKPICLPITDELKEKAEQ  256 (408)
T ss_dssp             SCSBTTCSCCEEEETTEEEECCCCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCC-CBTTBCCCBCCCSHHHHHHTTT
T ss_pred             eeeECCCccchhhcccccccCCceEEEeEEEEEeCCCCCccccccceEEEEECCccc-cccCccccCCCCcccccccccC
Confidence            998765433            234778899999999997  4689999999999999 788999999997532  11346


Q ss_pred             CCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCee------eeEe
Q psy16044        157 KQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPL------QCSL  230 (436)
Q Consensus       157 ~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl------~~~~  230 (436)
                      +..++++|||.+.... .+..|+++.+++++.+.|+..+....  ...||||+... +.++|.|||||||      ++. 
T Consensus       257 ~~~~~v~GWG~t~~~~-~s~~L~~~~v~iv~~~~C~~~~~~~~--~~~~iCAg~~~-g~d~C~GDSGGPL~~~~~~~~~-  331 (408)
T 2xxl_A          257 ISTYFVTGWGTTENGS-SSDVLLQANVPLQPRSACSQAYRRAV--PLSQLCVGGGD-LQDSCKGDSGGPLQAPAQYLGE-  331 (408)
T ss_dssp             CSEEEEEECCCBTTBC-SCSBCEEEEEEEECHHHHHHHHTSCC--CTTEEEECCSC-SSSGGGSCTTCEEEEEECCTTC-
T ss_pred             CCEEEEEEeCcCCCCC-CCchheEeeeeecCHHHHHHHhcccC--CCceEeecCCC-CCccCCCcccChhhcCccceEE-
Confidence            7899999999987544 57789999999999999999886542  34899998765 4799999999999      544 


Q ss_pred             cCCcEEEEEEEeEcCCCCCC---CcccccccceecCCccccC
Q psy16044        231 KDGRWYLAGITSFGSGYCGV---GIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       231 ~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~~~~~~~~~~  269 (436)
                      .+++|+|+||+|||...|+.   +.+||+|..|..||.+.+.
T Consensus       332 ~~~~~~l~GIvS~G~~~Cg~~~~PgVYTrVs~y~~WI~~~i~  373 (408)
T 2xxl_A          332 YAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMA  373 (408)
T ss_dssp             SSCEEEEEEEEEECCCCTTSCCCCEEEEEGGGGHHHHHHHHH
T ss_pred             ECCEEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            36789999999999544753   6799999999999987764

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=4.8e-46  Score=335.46  Aligned_cols=222  Identities=28%  Similarity=0.515  Sum_probs=186.8

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.+|.+++|||+|+|+..+      .++|+||||+++||||||||+...     ....+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~   69 (228)
T 2xw9_A            1 ILGGREAEAHARPYMASVQLNG------AHLCGGVLVAEQWVLSAAHCLEDA-----ADGKVQVLLGAHSLSQPEPSKRL   69 (228)
T ss_dssp             CBCC-CCCTTSCTTEEEEEETT------EEEEEEEEEETTEEEECGGGGSSC-----TTCCEEEEESCSBSSSCCTTCEE
T ss_pred             CCCCeECCCCCCCcEEEEEECC------CeEEEEEEEeCCEEEEcHHhCCCC-----CCCceEEEEcccccCCCCCcceE
Confidence            6899999999999999998643      689999999999999999999653     24568999999887765555688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|.++++||+|+  ...||||||||++|+. ++..++|+|||..+ .....+..++++|||.+...+..+..|++..++
T Consensus        70 ~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~-~~~~v~pi~l~~~~-~~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~  147 (228)
T 2xw9_A           70 YDVLRAVPHPDSQPDTIDHDLLLLQLSEKAT-LGPAVRPLPWQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLP  147 (228)
T ss_dssp             EEEEEEEECTTCCTTCCTTCCEEEEESSCCC-CBTTBCCCCBCCSC-CCCCTTC-CEEEESSCCSTTCCCCSBCEEEECC
T ss_pred             EEEEEEEeCCCCCCCCCCCcEEEEEeCCCcc-cCCCeeecccCCcc-cCCCCCCEEEEEEecccCCCCCCCchheEEEEE
Confidence            8999999999997  4689999999999999 77889999999853 334578899999999988766667889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Cccccccccee
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQPRL  261 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~~  261 (436)
                      +++.++|+..+.......+.|||++.  +..+.|.|||||||+++   +  +|+||+|||...|+.   +.+|++|..|.
T Consensus       148 ~~~~~~C~~~~~~~~~~~~~~~Ca~~--~~~~~C~GDsGgPL~~~---~--~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~  220 (228)
T 2xw9_A          148 VLDRATCNRRTHHDGAITERLMCAES--NRRDSCKGDAGGPLVCG---G--VLEGVVTSGSRVCGNRKKPGIYTRVASYA  220 (228)
T ss_dssp             EECHHHHTSTTTTTTCCCTTEEEECC--SSCBCCTTCTTCEEEET---T--EEEEEECCSCCCSSCTTSCEEEEEGGGGH
T ss_pred             EcChhHhcCccccCCcccCCEEecCC--CCCccCCCCCcccEEEC---C--EEEEEEeecCCcCCCCCCCcEEEEHHHHH
Confidence            99999999877643456779999986  34789999999999984   2  799999999855754   67999999999


Q ss_pred             cCCcccc
Q psy16044        262 INGKESI  268 (436)
Q Consensus       262 ~~~~~~~  268 (436)
                      .||.+.+
T Consensus       221 ~WI~~~i  227 (228)
T 2xw9_A          221 AWIDSVL  227 (228)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998754

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=7.9e-46  Score=332.94  Aligned_cols=219  Identities=26%  Similarity=0.493  Sum_probs=184.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...     ....+.|++|..+...   ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLI~~~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~---~~~~   66 (224)
T 1pq7_A            1 IVGGTSASAGDFPFIVSISRNG------GPWCGGSLLNANTVLTAAHCVSGY-----AQSGFQIRAGSLSRTS---GGIT   66 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECHHHHTTS-----CGGGEEEEESCSBSSS---SSEE
T ss_pred             CCCCEECCCCCcCeEEEEEECC------CeEEEEEEecCCEEEEcHHccCCC-----CCCceEEEeCcceecC---CCEE
Confidence            6899999999999999998532      689999999999999999999652     2456899999877632   3477


Q ss_pred             EeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCC-Cccccceeeeeec
Q psy16044        107 IPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPL  185 (436)
Q Consensus       107 ~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~-~~~~~l~~~~~~~  185 (436)
                      +.|+++++||+|+...+|||||||++|+. ++.+++|||||..... ...+..++++|||.+...+ ..+..|+++.+++
T Consensus        67 ~~v~~i~~hp~y~~~~~DiALl~L~~~~~-~~~~v~picL~~~~~~-~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~  144 (224)
T 1pq7_A           67 SSLSSVRVHPSYSGNNNDLAILKLSTSIP-SGGNIGYARLAASGSD-PVAGSSATVAGWGATSEGGSSTPVNLLKVTVPI  144 (224)
T ss_dssp             ECEEEEEECTTCBTTBTCCEEEEESSCCC-CBTTBCCCCBCCTTCC-CCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEE
T ss_pred             EEEEEEEECCCCCCCCCCEEEEEeCCCCc-CCCcccceecCCcccC-CCCCCEEEEEecCCcCCCCCcccceeeEeEEEE
Confidence            89999999999986689999999999999 7788999999953222 3578999999999987655 5567899999999


Q ss_pred             cchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Ccccccccceec
Q psy16044        186 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQPRLI  262 (436)
Q Consensus       186 ~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~~~  262 (436)
                      ++.+.|+..+.. ....+.|||++...+..++|.|||||||++.  ++  +|+||+|||.+ |+.   +.+|++|..|..
T Consensus       145 ~~~~~C~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~g--~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~  218 (224)
T 1pq7_A          145 VSRATCRAQYGT-SAITNQMFCAGVSSGGKDSCQGDSGGPIVDS--SN--TLIGAVSWGNG-CARPNYSGVYASVGALRS  218 (224)
T ss_dssp             ECHHHHHHHHCT-TTSCTTEEEECCTTCCCBCCTTCTTCEEECT--TC--CEEEEEEECSS-SSCTTCCEEEEETTTSHH
T ss_pred             EcHHHhhHhhcC-CCCCCCeEEeecCCCCCCCCcCCCCcceECc--CC--eEEEEEEeCCC-CCCCCCCeEEEEHHHHHH
Confidence            999999988752 2356799999876667899999999999984  33  69999999987 543   679999999999


Q ss_pred             CCccc
Q psy16044        263 NGKES  267 (436)
Q Consensus       263 ~~~~~  267 (436)
                      ||.+.
T Consensus       219 WI~~~  223 (224)
T 1pq7_A          219 FIDTY  223 (224)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            99764

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=1.9e-45  Score=330.09  Aligned_cols=215  Identities=28%  Similarity=0.559  Sum_probs=181.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc-CCceE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE-EKSEV  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~-~~~~~  105 (436)
                      |+||++|.+++|||+|+|+..+      .++|+||||+++||||||||+.+         .+.|.+|....... ....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGsLIs~~~VLTAAHC~~~---------~~~v~~g~~~~~~~~~~~~~   65 (223)
T 2bdg_A            1 IINGEDCSPHSQPWQAALVMEN------ELFCSGVLVHPQWVLSAAHCFQN---------SYTIGLGLHSLEADQEPGSQ   65 (223)
T ss_dssp             CBTCEECCTTSSTTEEEEECSS------CEEEEEEEEETTEEEECGGGCCS---------SEEEEESCSBSCGGGCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEeeCC------CEEEEEEEecCCEEEEhHHhCCC---------CeEEEEeeeecCCCCCCCcE
Confidence            6899999999999999998632      68999999999999999999853         36789998776532 33457


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      .+.+.++++||+|+  ...||||||||++|+. ++..++|||||...   ...+..++++|||.+... ..+..|+++.+
T Consensus        66 ~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~v~-~~~~v~pi~l~~~~---~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~  140 (223)
T 2bdg_A           66 MVEASLSVRHPEYNRPLLANDLMLIKLDESVS-ESDTIRSISIASQC---PTAGNSCLVSGWGLLANG-RMPTVLQCVNV  140 (223)
T ss_dssp             EEEEEEEEECTTTTSSTTCSCCEEEEESSCCC-CCSSCCCCCBCSSC---CCTTCEEEEEESCCCTTS-CCCSBCEEEEE
T ss_pred             EEEEEEEEeCCCCCCCCCcCcEEEEEECCccc-CCCceecccCCCCC---CCCCCEEEEEeCcccCCC-CCCCcceEEEE
Confidence            78999999999997  4689999999999999 77889999999742   346889999999988754 55678999999


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Ccccccccce
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQPR  260 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~  260 (436)
                      ++++.+.|+..+...  ..+.||||+...+..+.|.|||||||+++.     +|+||+|||...|+.   +.+|++|..|
T Consensus       141 ~~~~~~~C~~~~~~~--~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~  213 (223)
T 2bdg_A          141 SVVSEEVCSKLYDPL--YHPSMFCAGGGQDQKDSCNGDSGGPLICNG-----YLQGLVSFGKAPCGQVGVPGVYTNLCKF  213 (223)
T ss_dssp             EBCCHHHHHHHSTTT--CCTTEEEECCSTTCCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEECGGGT
T ss_pred             EEeCHHHhhhhhCCC--CCCCeEeccCCCCCCCcCCCCCCchheEcc-----EEEEEEEecCCCCCCCCCCcEEEEHHHh
Confidence            999999999987543  456999998766668999999999999852     699999999855753   6799999999


Q ss_pred             ecCCcccc
Q psy16044        261 LINGKESI  268 (436)
Q Consensus       261 ~~~~~~~~  268 (436)
                      ..||.+.+
T Consensus       214 ~~WI~~~i  221 (223)
T 2bdg_A          214 TEWIEKTV  221 (223)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998654

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=1.7e-45  Score=331.51  Aligned_cols=221  Identities=28%  Similarity=0.415  Sum_probs=186.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+......  ..++|+||||+++||||||||+.         ..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~--~~~~CgGtLI~~~~VLTAAhC~~---------~~~~v~~G~~~~~~~~~~~~~   69 (226)
T 4ag1_A            1 IIGGTECKPHSRPYMAYLEIVTSNG--PSKFCGGFLIRRNFVLTAAHCAG---------RSITVTLGAHNITEEEDTWQK   69 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECSSS--SCEEEEEEEEETTEEEECGGGCC---------SEEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCCC--cccEEEEEEEeCCEEEECcccCC---------CCeEEEeCCcccCCCCCcceE
Confidence            7899999999999999998764322  26889999999999999999983         357899999888776666788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|.++++||+|+  ...||||||||++|+. ++..++|+|||... .....+..++++|||.+......+..|++..++
T Consensus        70 ~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~-~~~~v~pi~l~~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~  147 (226)
T 4ag1_A           70 LEVIKQFRHPKYNTSTLHHDIMLLKLKEKAS-LTLAVGTLPFPSQF-NFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLR  147 (226)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CCSSSCCCCCC------CCTTCEEEEEESSBSSTTSCBCSBCEEEEEE
T ss_pred             EEEEEEEeCCCCCCCCCcCcEEEEEECCCCc-cCCceeccccCCcc-cCCCCCCEEEEEECCCCCCCCCCCCEeEEEEEE
Confidence            9999999999997  4679999999999999 78889999999853 334578999999999988766677889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.+.|.....   ...+.+||++...+..+.|.|||||||++..     +|+||+|||.+|+..+.+|++|..|..||
T Consensus       148 ~~~~~~C~~~~~---~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~~p~vyt~v~~~~~WI  219 (226)
T 4ag1_A          148 LMDPQACSHFRD---FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG-----VAQGIVSYGRSDAKPPAVFTRISHYRPWI  219 (226)
T ss_dssp             EECGGGGTTSTT---CCTTTEEEESCTTSCCBCCTTCTTCEEEETT-----EEEEEEEECBTTCCSCEEEEEHHHHHHHH
T ss_pred             EcChHHcccccC---cCccceEeeccCCCCCcCccCCCCCceEEcC-----EEEEEEEECCCCCCCCCEEEEhHHHHHHH
Confidence            999999983321   2356899999877778999999999999842     79999999998666789999999999999


Q ss_pred             cccc
Q psy16044        265 KESI  268 (436)
Q Consensus       265 ~~~~  268 (436)
                      .+.+
T Consensus       220 ~~~i  223 (226)
T 4ag1_A          220 NQIL  223 (226)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=1.2e-45  Score=331.22  Aligned_cols=217  Identities=29%  Similarity=0.501  Sum_probs=182.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+..+      .++|+||||+++||||||||+...    .....+.|++|......   ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAHC~~~~----~~~~~~~v~~G~~~~~~---~~~~   67 (222)
T 1eq9_A            1 IVGGKDAPVGKYPYQVSLRLSG------SHRCGASILDNNNVLTAAHCVDGL----SNLNRLKVHVGTNYLSE---SGDV   67 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEECSSSEEEECHHHHTTC----SCGGGEEEEESCSBTTS---CCEE
T ss_pred             CCCCEECCCCCcceEEEEEeCC------CeEEEEEEeeCCEEEEhhhcCCCC----CCCceEEEEECceecCC---CCeE
Confidence            6899999999999999998642      589999999999999999999653    12466899999876632   3477


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||+|++|+. ++..++|||||.....  ..+..++++|||.+...+..+..|+++.++
T Consensus        68 ~~v~~~~~hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picL~~~~~~--~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~  144 (222)
T 1eq9_A           68 YDVEDAVVNKNYDDFLLRNDVALVHLTNPIK-FNDLVQPIKLSTNDED--LESNPCTLTGWGSTRLGGNTPNALQEIELI  144 (222)
T ss_dssp             EEEEEEEECTTCBTTTTBCCCEEEEESSCCC-CBTTBCCCEECSCCTT--CTTSEEEEEECCCSSTTCCCCSBCEEEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCCEEEEEECCccc-cCCceEccCCCCCCcC--CCCCEEEEEcccccCCCCcccchheEeEEE
Confidence            8999999999997  4679999999999999 7788999999985432  467889999999988766677889999999


Q ss_pred             ccchhhhh-hhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC-CCCcccccccceec
Q psy16044        185 LHNISVCR-DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-GVGIRYSHRQPRLI  262 (436)
Q Consensus       185 ~~~~~~C~-~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C-~~~~~y~~v~~~~~  262 (436)
                      +++.+.|+ ..+.    ..+.|+|++.. ...++|.|||||||+++   +  +|+||+|||.+|. +.+.+|++|.+|..
T Consensus       145 ~~~~~~C~~~~~~----~~~~~~Ca~~~-~~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~C~~~~p~vyt~V~~~~~  214 (222)
T 1eq9_A          145 VHPQKQCERDQWR----VIDSHICTLTK-RGEGACHGDSGGPLVAN---G--AQIGIVSFGSPCALGEPDVYTRVSSFVS  214 (222)
T ss_dssp             EECHHHHHHHSSS----CCTTEEEECCC-TTCBCCTTCTTCEEEET---T--EEEEEEEECSTTTSSSCEEEEEGGGGHH
T ss_pred             EeCHHHhCcccCC----CCccEEeecCC-CCCeeeeCCccceEEEC---C--EEEEEEEECCCcCCCCCCEEEEHHHHHH
Confidence            99999998 4442    45789999874 34789999999999984   2  7999999998733 35789999999999


Q ss_pred             CCccccC
Q psy16044        263 NGKESIR  269 (436)
Q Consensus       263 ~~~~~~~  269 (436)
                      ||.+.+.
T Consensus       215 WI~~~~~  221 (222)
T 1eq9_A          215 WINANLK  221 (222)
T ss_dssp             HHHHTSC
T ss_pred             HHHHHhh
Confidence            9987664

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=1.4e-46  Score=367.03  Aligned_cols=246  Identities=24%  Similarity=0.418  Sum_probs=188.0

Q ss_pred             CCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEE
Q psy16044         12 RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAV   91 (436)
Q Consensus        12 ~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~   91 (436)
                      ..||++........||+||+.|..++|||+|+|..        .++|+||||+++||||||||+............+.|+
T Consensus       143 ~~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~--------~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~  214 (399)
T 1gpz_A          143 PVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVF  214 (399)
T ss_dssp             ECCSCCSSCCCSSCCCCSCEECCTTSSTTEEEEES--------SSEEEEEEETTTEEEECGGGTSCTTC-----CCCEEE
T ss_pred             CCCCCcCCcccCCCEEECCEECCCCCCCCEEEECC--------CCCeEEEEeCCCEEEeChhcccccccccCCcceEEEE
Confidence            47997655445568999999999999999999853        3469999999999999999997543222233567899


Q ss_pred             eccccCCccCCceEEEeeeEEEeCCCCC-----CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecC
Q psy16044         92 LGDWDRTEEEKSEVRIPVERIRVHEEFH-----NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWG  166 (436)
Q Consensus        92 ~g~~~~~~~~~~~~~~~v~~i~~hp~y~-----~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG  166 (436)
                      +|..+..... ..+.+.|+++++||+|+     ...||||||||++|+. ++.+|+|||||.... ....+..++++|||
T Consensus       215 ~G~~~~~~~~-~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG  291 (399)
T 1gpz_A          215 LGHTNVEELM-KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVT-LGPNLLPICLPDNDT-FYDLGLMGYVSGFG  291 (399)
T ss_dssp             ESCSBHHHHH-HTCCCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCC-CBTTBCCCBCCCSGG-GGCTTCEEEEEECC
T ss_pred             eccccccccc-cccccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCc-CCCceeeeecCCCcc-ccCCCCEEEEEccC
Confidence            9987643221 12346799999999996     2578999999999999 788899999998532 23467889999999


Q ss_pred             ccCCCCCccccceeeeeeccchhhhhhhcCCC---cCCcCCeEEeccCCCCCCCccCCCCCeeeeEe-cCCcEEEEEEEe
Q psy16044        167 RVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS---VELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITS  242 (436)
Q Consensus       167 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~~l~GI~S  242 (436)
                      .+..  ..+..|+++.+++++.+.|+..+...   ...+++||||+...+..++|+|||||||++.. .+++|+|+||+|
T Consensus       292 ~~~~--~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~~l~GivS  369 (399)
T 1gpz_A          292 VMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVS  369 (399)
T ss_dssp             -------CCSBCEEEEEEEECHHHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEEEEEEEEC
T ss_pred             CCCC--ccCccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeEEEEEEEE
Confidence            8764  34678999999999999999876431   23467999998766568999999999999875 367899999999


Q ss_pred             EcCCCCCCCcccccccceecCCccccCC
Q psy16044        243 FGSGYCGVGIRYSHRQPRLINGKESIRG  270 (436)
Q Consensus       243 ~g~~~C~~~~~y~~v~~~~~~~~~~~~~  270 (436)
                      ||.+|...+.+|++|..|+.||.+.+..
T Consensus       370 ~g~~C~~~~~vyt~V~~y~~WI~~~~~~  397 (399)
T 1gpz_A          370 WGIGCSRGYGFYTKVLNYVDWIKKEMEE  397 (399)
T ss_dssp             CCTTTTTTEEEEEEGGGGHHHHHHHTC-
T ss_pred             eCCCcCCCCeEEEEhHHhHHHHHHHhcc
Confidence            9998444568999999999999877653

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=3.4e-45  Score=329.42  Aligned_cols=222  Identities=27%  Similarity=0.481  Sum_probs=186.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+....  +. .++|+||||+++||||||||+..         .+.|++|.++........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~--~~-~~~CgGsLI~~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~~~   68 (227)
T 1euf_A            1 IIGGHEAKPHSRPYMAFLLFKTS--GK-SHICGGFLVREDFVLTAAHCLGS---------SINVTLGAHNIMERERTQQV   68 (227)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESS--SS-EEEEEEEEEETTEEEECGGGCCE---------EEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCeECCCCCcCCEEEEEEeCC--CC-ceEEEEEEeeCCEEEECHHHCCC---------CcEEEEcccccCCCCCccEE
Confidence            78999999999999999987532  11 58999999999999999999853         47899999887665556788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++..++|||||.... ....+..++++|||.+......+..|+++.++
T Consensus        69 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~  146 (227)
T 1euf_A           69 IPVRRPIPHPDYNDETLANDIMLLKLTRKAD-ITDKVSPINLPRSLA-EVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLE  146 (227)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CCSSCCCCCCCCTTC-CCCTTCEEEEEESCBSSTTCCBCSBCEEEEEE
T ss_pred             EEEEEEEeCCCCCCCCCcCceEEEEECCcCc-CCCceeccCCCCccc-cCCCCCEEEEEEEccCCCCCCCchhheEeEec
Confidence            9999999999997  4689999999999999 778899999998532 34578999999999988666667889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.+.|...+...  ..+.||||+...+....|.|||||||++++     +|+||+|||-+....+.+|++|..|..||
T Consensus       147 i~~~~~C~~~~~~~--~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~~-----~l~Gi~S~gc~~~~~p~vyt~V~~y~~WI  219 (227)
T 1euf_A          147 VQSEEKCIARFKNY--IPFTQICAGDPSKRKNSFSGDSGGPLVCNG-----VAQGIVSYGRNDGTTPDVYTRISSFLSWI  219 (227)
T ss_dssp             BCCTHHHHTTCTTC--CTTTEEEESCTTSCCBCCTTCTTCEEEETT-----EEEEEEEECCTTCCSCEEEEEGGGTHHHH
T ss_pred             cccHHHhhHhhcCc--CCCcEEEccCCCCCCcccccCCCCceEECC-----EEEEEEEEeCCCCCCCeEEEEHHHhHHHH
Confidence            99999999877543  456899998766545678999999999842     79999999922223478999999999999


Q ss_pred             ccccC
Q psy16044        265 KESIR  269 (436)
Q Consensus       265 ~~~~~  269 (436)
                      .+.+.
T Consensus       220 ~~~~~  224 (227)
T 1euf_A          220 HSTMR  224 (227)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            88764

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=3e-45  Score=332.75  Aligned_cols=224  Identities=27%  Similarity=0.395  Sum_probs=186.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc--CCce
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE--EKSE  104 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~--~~~~  104 (436)
                      |+||++|.. +|||+|+|+..+      .++|+||||+++||||||||+...     ....+.|++|..+....  ....
T Consensus         1 IvgG~~a~~-~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~   68 (240)
T 1si5_H            1 VVNGIPTRT-NIGWMVSLRYRN------KHICGGSLIKESWVLTARQCFPSR-----DLKDYEAWLGIHDVHGRGDEKCK   68 (240)
T ss_dssp             CBSCEECSS-CCTTEEEEEESS------SEEEEEEEEETTEEEEEGGGCSSS-----CGGGEEEEESCSBSSCSTTTTTC
T ss_pred             CCCCeeCCC-CCCeEEEEEeCC------CeEEEEEEeeCCEEEEhHHhcCCC-----CCccEEEEEeeeecCCCCCCCcc
Confidence            689999999 999999998752      689999999999999999999763     24678999999877654  3446


Q ss_pred             EEEeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        105 VRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       105 ~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.+.|.+++.||.    .+|||||+|++|+. ++..++|||||... .....+..++++|||.+.... .+..|++..++
T Consensus        69 ~~~~v~~~~~~p~----~~DiALl~L~~~v~-~~~~v~picLp~~~-~~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~  141 (240)
T 1si5_H           69 QVLNVSQLVYGPE----GSDLVLMKLARPAV-LDDFVSTIDLPNYG-STIPEKTSCSVYGWGYTGLIN-YDGLLRVAHLY  141 (240)
T ss_dssp             EEEEEEEEEECSS----TTCEEEEEESSCCC-CSSSCCCCBCCCTT-CCCCTTCEEEEEESSCCCCSS-CCCBCEEEEEE
T ss_pred             eEEEEEEEEcCCC----CCcEEEEEECCccc-cCCceeccCcCCcC-CCCCCCCEEEEEEeCCCCCCC-CCCeeEEEEEe
Confidence            7889999999987    69999999999999 77889999999853 334578899999999887543 46789999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCcccccccceec
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGIRYSHRQPRLI  262 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~~y~~v~~~~~  262 (436)
                      +++.+.|...+.......+.|||++...+..++|.|||||||++.. +++|+|+||+|||.+|+  +.+.+|++|..|..
T Consensus       142 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~  220 (240)
T 1si5_H          142 IMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAK  220 (240)
T ss_dssp             EECGGGTCC-------CCTTEEEEECSSSCCBCCTTCTTCEEEEEC-SSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHH
T ss_pred             ecCHHHhhhhhcCCccCCCCEEeecCCCCCCEeccCCCCCcEEEEE-CCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHH
Confidence            9999999987754433667999999877668999999999999984 78999999999998743  34689999999999


Q ss_pred             CCccccCC
Q psy16044        263 NGKESIRG  270 (436)
Q Consensus       263 ~~~~~~~~  270 (436)
                      ||.+.+..
T Consensus       221 WI~~~i~~  228 (240)
T 1si5_H          221 WIHKIILT  228 (240)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHhc
Confidence            99887764

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=1.3e-45  Score=331.88  Aligned_cols=221  Identities=29%  Similarity=0.461  Sum_probs=189.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+......  ..++|+||||+++||||||||+.         ..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~--~~~~CgGtLI~~~~VLTAAhC~~---------~~~~v~~g~~~~~~~~~~~~~   69 (224)
T 3rp2_A            1 IIGGVESIPHSRPYMAHLDIVTEKG--LRVICGGFLISRQFVLTAAHCKG---------REITVILGAHDVRKRESTQQK   69 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTS--CEEEEEEEESSSSEEEECGGGCC---------SEEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCC--cEEEEEeEEeeCCEEEEchhcCC---------CCcEEEEeccccCcCCCCcEE
Confidence            7899999999999999998765322  26889999999999999999973         357899999887776667788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  +..||||||||++|+. ++..++|+|||... .....+..++++|||.+...+..+..|++..++
T Consensus        70 ~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~-~~~~v~pi~l~~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~  147 (224)
T 3rp2_A           70 IKVEKQIIHESYNSVPNLHDIMLLKLEKKVE-LTPAVNVVPLPSPS-DFIHPGAMCWAAGWGKTGVRDPTSYTLREVELR  147 (224)
T ss_dssp             EEEEEEEECTTCCSSSCCSCCEEEEESSCCC-CBTTBCCCCCCCTT-CCCCTTCEEEEEESSEEETTEEECSBCEEEEEE
T ss_pred             EEEEEEEECCCccCCCCCccEEEEEcCCCcc-cCCcccceecCCcc-cCCCCCCEEEEEeCCCCCCCCCCCceeeEeeee
Confidence            9999999999997  4679999999999999 78889999999864 334578999999999987666667789999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.+.|....   ....+.++|++...+..+.|.|||||||++..     +|+||+|||.+|+..+.+|++|..|..||
T Consensus       148 ~~~~~~C~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~~p~vyt~v~~y~~WI  219 (224)
T 3rp2_A          148 IMDEKACVDYR---YYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG-----VAHGIVSYGHPDAKPPAIFTRVSTYVPWI  219 (224)
T ss_dssp             EECGGGTTTTT---CCCTTTEEEECCTTSCCBCCTTTTTCEEEETT-----EEEEEEEECCTTCCSCEEEEEHHHHHHHH
T ss_pred             ecChHHhcccc---ccCcCCEEEecCCCCCCeeccCCCCCeEEEcc-----eeeEEEEECCCCCCCCcEEEEHHHhHHHH
Confidence            99999998722   22356899999877778999999999999843     79999999998777789999999999999


Q ss_pred             cccc
Q psy16044        265 KESI  268 (436)
Q Consensus       265 ~~~~  268 (436)
                      .+.+
T Consensus       220 ~~~i  223 (224)
T 3rp2_A          220 NAVI  223 (224)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8754

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=1.4e-45  Score=331.54  Aligned_cols=215  Identities=32%  Similarity=0.597  Sum_probs=180.3

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.+|.+++|||+|+|+...      .++|+||||+++||||||||+.         ..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGsLI~~~~VLTAAHC~~---------~~~~v~~G~~~~~~~~~~~~~   65 (225)
T 1npm_A            1 ILEGRECIPHSQPWQAALFQGE------RLICGGVLVGDRWVLTAAHCKK---------QKYSVRLGDHSLQSRDQPEQE   65 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGCC---------SSCEEEESCSBTTC--CCCEE
T ss_pred             CCCCEECCCCCcCcEEEEeeCC------ceEEEEEEECCCEEEEhHHcCC---------CCceEEEeeeEcCCCCCCcEE
Confidence            6899999999999999997532      6899999999999999999984         236899999887665556688


Q ss_pred             EeeeEEEeCCCC-C----CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccC-CCCCcccccee
Q psy16044        107 IPVERIRVHEEF-H----NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK-PKGDLVSKLRQ  180 (436)
Q Consensus       107 ~~v~~i~~hp~y-~----~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~-~~~~~~~~l~~  180 (436)
                      +.|.++++||+| +    ...||||||||++|+. ++..++|||||...   ...+..++++|||.+. ..+..+..|++
T Consensus        66 ~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~~~-~~~~v~pi~L~~~~---~~~~~~~~v~GwG~~~~~~~~~~~~L~~  141 (225)
T 1npm_A           66 IQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSAN-LGDKVKPVQLANLC---PKVGQKCIISGWGTVTSPQENFPNTLNC  141 (225)
T ss_dssp             ECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCC-CSSSSCCCEECSSC---CCTTCEEEEEESSCSSSSSCCCCSBCEE
T ss_pred             EEEEEEEECCCCCCCCccCccccEEEEeeCCccc-CCCceeceECCCCC---CCCCCEEEEEeCCcccCCCCCCCccceE
Confidence            999999999999 3    3579999999999999 77889999999753   3468899999999874 34556778999


Q ss_pred             eeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CCcccccc
Q psy16044        181 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VGIRYSHR  257 (436)
Q Consensus       181 ~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~~~y~~v  257 (436)
                      +.+++++.+.|+..+..  ...+.||||+... ..+.|.|||||||+++   +  +|+||+|||...|+   .+.+|++|
T Consensus       142 ~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~-~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~~C~~~~~p~vyt~V  213 (225)
T 1npm_A          142 AEVKIYSQNKCERAYPG--KITEGMVCAGSSN-GADTCQGDSGGPLVCD---G--MLQGITSWGSDPCGKPEKPGVYTKI  213 (225)
T ss_dssp             EEEEECCHHHHHHHSTT--TCCTTEEEEECTT-CCBCCTTCTTCEEEET---T--EEEEEEEECCSSSCBTTBCEEEEEH
T ss_pred             eEEeeecHHHhhHHhCC--CCCCCEEeecCCC-CCeecCCCCCchheEC---C--EEEEEEEeCCCCCCCCCCCeEEEEH
Confidence            99999999999998864  3457999998765 4799999999999984   2  59999999955565   46799999


Q ss_pred             cceecCCcccc
Q psy16044        258 QPRLINGKESI  268 (436)
Q Consensus       258 ~~~~~~~~~~~  268 (436)
                      ..|..||.+.+
T Consensus       214 ~~y~~WI~~~~  224 (225)
T 1npm_A          214 CRYTTWIKKTM  224 (225)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998654

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=1.2e-45  Score=360.73  Aligned_cols=241  Identities=25%  Similarity=0.459  Sum_probs=197.4

Q ss_pred             CCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEE
Q psy16044         12 RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAV   91 (436)
Q Consensus        12 ~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~   91 (436)
                      ..||....  ....||+||++|..++|||+|+|+.        .++|+||||+++||||||||+.....   ....+.|+
T Consensus       149 ~~CG~~~~--~~~~rIvgG~~a~~~~~Pw~v~l~~--------~~~CgGsLIs~~~VLTAAHC~~~~~~---~~~~~~V~  215 (403)
T 1zjk_A          149 PVCGLSAR--TTGGQIYGGQKAKPGDFPWQVLILG--------GTTAAGALLYDNWVLTAAHAVYEQKH---DASALDIR  215 (403)
T ss_dssp             ECCCCCSS--CCSCCCSSCEECCTTSSTTEEEEEE--------SCCEEEEEETTTEEEECHHHHGGGTT---CSTTEEEE
T ss_pred             CCCCCCCC--CCCccccCCcCCCCCCcCCEeEecc--------CCceEEEEecCCEEEEcHHhCCCCCC---CcceEEEE
Confidence            47996543  2467999999999999999999975        35799999999999999999965321   24668899


Q ss_pred             eccccCCccCCceEEEeeeEEEeCCCCCC---CCCceeEEEeCCCCCCCCCceeeeeecCCCCC-CCCCCCcEEEEecCc
Q psy16044         92 LGDWDRTEEEKSEVRIPVERIRVHEEFHN---YHHDIALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGR  167 (436)
Q Consensus        92 ~g~~~~~~~~~~~~~~~v~~i~~hp~y~~---~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~-~~~~~~~~~~~GwG~  167 (436)
                      +|.++..  ....+.+.|+++++||+|+.   ..||||||||++|+. ++.+|+|||||..... .+..+..++++|||.
T Consensus       216 ~G~~~~~--~~~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~  292 (403)
T 1zjk_A          216 MGTLKRL--SPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVV-INSNITPICLPRKEAESFMRTDDIGTASGWGL  292 (403)
T ss_dssp             ESCSBTT--CSCCEEEEEEEEEECTTCCTTSCCTTCCEEEEESSCCC-CBTTBCCCBCCCGGGGGGSSTTCEEEEEESCT
T ss_pred             ccccccC--CCCceEEeEEEEEECCCCCCCCCCcccEEEEEeCCcCc-CCCceecccCCCcccccccCCCCeEEEEcCCc
Confidence            9987532  23457789999999999973   579999999999999 7888999999975322 145688999999998


Q ss_pred             cCCCCCccccceeeeeeccchhhhhhhcCCCc----CCcCCeEEeccCCCCCCCccCCCCCeeeeEe-cCCcEEEEEEEe
Q psy16044        168 VKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV----ELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITS  242 (436)
Q Consensus       168 ~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~----~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~~l~GI~S  242 (436)
                      +... ..+..|+++.+++++.+.|+..+....    ..+++||||+...+..++|.|||||||++.. .+++|+|+||+|
T Consensus       293 ~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS  371 (403)
T 1zjk_A          293 TQRG-FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVS  371 (403)
T ss_dssp             TSSS-CCCSBCEEEEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEE
T ss_pred             CCCC-ccCcccEEEEEeEeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEE
Confidence            8754 557789999999999999998875421    4677999999877678999999999999975 467999999999


Q ss_pred             EcCCCCC---CCcccccccceecCCccccC
Q psy16044        243 FGSGYCG---VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       243 ~g~~~C~---~~~~y~~v~~~~~~~~~~~~  269 (436)
                      ||...|+   .+.+|++|..|..||.+.+.
T Consensus       372 ~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~  401 (403)
T 1zjk_A          372 WGSMNCGEAGQYGVYTKVINYIPWIENIIS  401 (403)
T ss_dssp             EECSCC--CCCCEEEEEGGGGHHHHHHHHT
T ss_pred             ECCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            9944475   36799999999999987654

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=1.6e-45  Score=335.29  Aligned_cols=227  Identities=26%  Similarity=0.471  Sum_probs=189.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+  .      .++|+||||+++||||||||+....   .....+.|++|........  .+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~--~------~~~CgGtLI~~~~VLTAAhC~~~~~---~~~~~~~v~~g~~~~~~~~--~~~   67 (242)
T 3tvj_B            1 IYGGQKAKPGDFPWQVLIL--G------GTTAAGALLYDNWVLTAAHAVYEQK---HDASALDIRMGTLKRLSPH--YTQ   67 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEE--S------SEEEEEEEETTTEEEECHHHHSTTT---TCSSCCEEEESCSBTTCSC--CEE
T ss_pred             CcCCeeCCCCCCCCEEEEe--c------CCcEEEEEecCCEEEECHHHCCCCC---CCcceEEEEeccccccCcc--cce
Confidence            7899999999999999997  1      6889999999999999999996531   2346688999987765443  267


Q ss_pred             EeeeEEEeCCCCCC---CCCceeEEEeCCCCCCCCCceeeeeecCCCCC-CCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFHN---YHHDIALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~~---~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~-~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.++++++||+|+.   ..||||||||++|+. ++.+++|||||..... ....+..++++|||.+.. +..+..|+++.
T Consensus        68 ~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~~~-~~~~~~l~~~~  145 (242)
T 3tvj_B           68 AWSEAVFIHEGYTHDAGFDNDIALIKLNNKVV-INSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVD  145 (242)
T ss_dssp             EEEEEEEECTTCCTTSCSTTCCEEEEESSCCC-CBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCCTT-SSCCSBCEEEE
T ss_pred             eeEEEEEeCCCCCCCCCCcCcEEEEEECCccc-cCCCEecCCcCCCcccccccCCCEEEEEEeCCCCC-CCcCccceEEe
Confidence            78999999999974   579999999999999 7888999999986421 355788999999998874 56677899999


Q ss_pred             eeccchhhhhhhcCCC----cCCcCCeEEeccCCCCCCCccCCCCCeeeeEe-cCCcEEEEEEEeEcCCCCCC---Cccc
Q psy16044        183 VPLHNISVCRDKYGDS----VELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGYCGV---GIRY  254 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~----~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~~l~GI~S~g~~~C~~---~~~y  254 (436)
                      +.+++.+.|+..+...    ....+.|||++...+..+.|.|||||||++.. .+++|+|+||+|||...|+.   +.+|
T Consensus       146 ~~i~~~~~C~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~~~p~vy  225 (242)
T 3tvj_B          146 IPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVY  225 (242)
T ss_dssp             EEBCCHHHHHHHHHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEEESSTTCTTCCEEE
T ss_pred             eeEEcHHHHHHhhccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeCCCCCCCCCCCeEE
Confidence            9999999999887542    23567999999877778999999999999975 57899999999999544654   5799


Q ss_pred             ccccceecCCcccc
Q psy16044        255 SHRQPRLINGKESI  268 (436)
Q Consensus       255 ~~v~~~~~~~~~~~  268 (436)
                      ++|.+|..||.+.+
T Consensus       226 t~V~~y~~WI~~~i  239 (242)
T 3tvj_B          226 TKVINYIPWIENII  239 (242)
T ss_dssp             EEGGGGHHHHHHHH
T ss_pred             EEHHHHHHHHHHHH
Confidence            99999999998765

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=4.2e-46  Score=338.48  Aligned_cols=227  Identities=35%  Similarity=0.611  Sum_probs=179.8

Q ss_pred             CCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCce--EE
Q psy16044         29 NGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSE--VR  106 (436)
Q Consensus        29 ~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~--~~  106 (436)
                      ||++|.+++|||+|+|+....  +...++|+||||+++||||||||+..       ...+.|++|..+........  +.
T Consensus         1 gG~~a~~~~~Pw~v~l~~~~~--~~~~~~CgGtLIs~~~VLTAAhC~~~-------~~~~~v~~G~~~~~~~~~~~~~~~   71 (240)
T 1fon_A            1 NGEDAVPYSWSWQVSLQYEKD--GAFHHTCGGSLIAPDWVVTAGHCIST-------SRTYQVVLGEYDRSVLEGSEQVIP   71 (240)
T ss_dssp             --------CEEEEEEEEEEET--TEEEEEECCEEEETTEEEECGGGCCT-------TSCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCccCCcCCcccEEEEEEecC--CcEeeEEEEEEeeCCEEEECHHHCCC-------CCceEEEeeeeeccccCCCceeEe
Confidence            689999999999999987431  11258999999999999999999865       25678999988776543333  67


Q ss_pred             EeeeEEEeCCCCCC--CC--CceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFHN--YH--HDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~~--~~--~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.|+++++||+|+.  ..  ||||||||++|+. ++..++|||||.... .+..+..++++|||.+...+..+..|+++.
T Consensus        72 ~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  149 (240)
T 1fon_A           72 INAGDLFVHPLWNSNCVACGNDIALVKLSRSAQ-LGDKVQLANLPPAGD-ILPNEAPCYISGWGRLYTGGPLPDKLQQAL  149 (240)
T ss_dssp             ECTTSEEECTTCCTTCGGGCCCCEEEECSSCCC-CTTSCCCCBCCCTTC-CCCTTCCCEEEECTTCCCSSSCCSBCEEEE
T ss_pred             eeeeEEEECCCCcCCCccCCCCEEEEEecCccc-cCCcccccCCCCccc-CCCCCCeEEEEEEeEcCCCCCCChhheEEE
Confidence            88999999999983  45  9999999999999 778899999998643 345688999999999887666778899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcC-CCCC---CCccccccc
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GYCG---VGIRYSHRQ  258 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~-~~C~---~~~~y~~v~  258 (436)
                      +++++.+.|+..+.......+.|||++.. + .+.|.|||||||++...+++|+|+||+|||. ..|+   .+.+|++|.
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~-~-~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~  227 (240)
T 1fon_A          150 LPTVDYEHCSQWDWWGITVKKTMVCAGGD-T-RSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVS  227 (240)
T ss_dssp             CCEECHHHHTSTTTTGGGCCTTEEEECCS-S-SCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGG
T ss_pred             EeeeCHHHhccceecCCccccceEeecCC-C-CcccCCCCCCeEEeEcCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEhH
Confidence            99999999987643223456799999853 3 7899999999999986588999999999997 2465   468999999


Q ss_pred             ceecCCcccc
Q psy16044        259 PRLINGKESI  268 (436)
Q Consensus       259 ~~~~~~~~~~  268 (436)
                      .|..||.+.+
T Consensus       228 ~~~~WI~~~~  237 (240)
T 1fon_A          228 AFIDWIDETI  237 (240)
T ss_dssp             GSHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=1.9e-45  Score=330.77  Aligned_cols=217  Identities=31%  Similarity=0.585  Sum_probs=184.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+..       ...+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLI~~~~VLTAAHC~~~-------~~~~~v~~G~~~~~~~~~~~~~   67 (226)
T 1azz_A            1 IVGGVEAVPNSWPHQAALFIDD------MYFCGGSLISPEWILTAAHCMDG-------AGFVDVVLGAHNIREDEATQVT   67 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------TEEEEEEEEETTEEEECHHHHTT-------CSCEEEEESCSBSSSCCTTCEE
T ss_pred             CCCCEECCCCCcCCEEEEEECC------cEEEEEEEecCCEEEEhHHhcCC-------CCceEEEEcceEcCCCCCccEE
Confidence            7899999999999999998732      68999999999999999999864       3567899999887765555688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCC-Cccccceeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRV  183 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~-~~~~~l~~~~~  183 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++..++|||||..+.   ..+..++++|||.+...+ ..+..|++..+
T Consensus        68 ~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~-~~~~v~picL~~~~~---~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~  143 (226)
T 1azz_A           68 IQSTDFTVHENYNSFVISNDIAVIRLPVPVT-LTAAIATVGLPSTDV---GVGTVVTPTGWGLPSDSALGISDVLRQVDV  143 (226)
T ss_dssp             EEECCEEECTTCBTTTTBSCCEEEECSSCCC-CCSSSCCCBCCSSCC---CTTCEEEEEESSCSSTTCSSSCSBCEECCE
T ss_pred             EEEEEEEECCCCCCCCCCCceEEEEECCccc-cCCCcccccCCCCCC---CCCCEEEEEeCCccCCCCCCCCchhEEeeE
Confidence            8999999999997  4689999999999999 788899999998542   568899999999887543 45778999999


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC-CCC--CCcccccccce
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCG--VGIRYSHRQPR  260 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~-~C~--~~~~y~~v~~~  260 (436)
                      ++++.+.|+..+.   ...+.|||++.. +..++|.|||||||+++   +  +|+||+|||.. .|+  .+.+|++|..|
T Consensus       144 ~i~~~~~C~~~~~---~~~~~~~Ca~~~-~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~~~~C~~~~p~vyt~V~~~  214 (226)
T 1azz_A          144 PIMSNADCDAVYG---IVTDGNICIDST-GGKGTCNGDSGGPLNYN---G--LTYGITSFGAAAGCEAGYPDAFTRVTYF  214 (226)
T ss_dssp             EEECHHHHHHHHS---CCCTTEEEECCT-TTCBCCTTCTTCEEEET---T--EEEEEEEEEETTCTTSCCCEEEEESGGG
T ss_pred             EEEChhHhhhhhC---cCCCceEeecCC-CCCccCCCCCCcceEEC---C--EEEEEEEEECCCCCCCCCCCEEEEHHHH
Confidence            9999999999885   356799999864 44789999999999963   2  79999999974 475  35799999999


Q ss_pred             ecCCccccC
Q psy16044        261 LINGKESIR  269 (436)
Q Consensus       261 ~~~~~~~~~  269 (436)
                      ..||.+.+.
T Consensus       215 ~~WI~~~~~  223 (226)
T 1azz_A          215 LDWIQTQTG  223 (226)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999987654

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=2.5e-44  Score=326.59  Aligned_cols=227  Identities=30%  Similarity=0.571  Sum_probs=181.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCc-eE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKS-EV  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~-~~  105 (436)
                      |+||++|..++|||+|+|+....    ..++|+||||+++||||||||+..         .+.|++|.......... ..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~----~~~~CgGtLI~~~~VLTAAHC~~~---------~~~v~~g~~~~~~~~~~~~~   67 (238)
T 4e7n_A            1 IIGGDECNINEHRFLVALYTSRS----RTLFCGGTLINQEWVLTAAHCDRK---------NFRIKLGMHSKKVPNEDEQT   67 (238)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTT----CCEEEEEEECSSSEEEECGGGCCS---------SCEEEESCSCSSSCCTTCEE
T ss_pred             CCCCeeCCCCCcCcEEEEEECCC----CCEEEEEEEecCCEEEEhHHcCCC---------CCeEEeceeeccccCCCcee
Confidence            78999999999999999976531    168999999999999999999743         35789998776644333 34


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      ...+..++.||.|+  ...||||||||++|+. ++..++|||||...   ...+..++++|||.+.              
T Consensus        68 ~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~-~~~~v~pi~l~~~~---~~~~~~~~v~GwG~~~--------------  129 (238)
T 4e7n_A           68 RVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVK-NSKHIAPFSLPSSP---PSVGSVCRIMGWGRIS--------------  129 (238)
T ss_dssp             ECEEEEECSSTTCCCCSSSCCCEEEEESSCCC-CBTTBCCCCCCSSC---CCTTCEEEEEESSCSS--------------
T ss_pred             EeeeeeEEcCCCCCCCCCCCcEEEEEeCCCcc-CCCceeeeeCCCCC---CCCCCEEEEEECCCCC--------------
Confidence            45567777899997  4689999999999998 67789999998742   2236667777776432              


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecC
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLIN  263 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~  263 (436)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (238)
T 4e7n_A          130 --------------------------------------------------------------------------------  129 (238)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC-CCccccceEEEE
Q psy16044        264 GKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRV  342 (436)
Q Consensus       264 ~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~  342 (436)
                                                                                       .. ...+..|+++.+
T Consensus       130 -----------------------------------------------------------------~~~~~~~~~l~~~~~  144 (238)
T 4e7n_A          130 -----------------------------------------------------------------PTEGTYPDVPHCVNI  144 (238)
T ss_dssp             -----------------------------------------------------------------SSSCCCCSSCEEEEE
T ss_pred             -----------------------------------------------------------------CCCCCCCccceEeec
Confidence                                                                             11 122456889999


Q ss_pred             EeeCccccccccCCC-ccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcc
Q psy16044        343 PLHNISVCRDKYGDS-VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSF  420 (436)
Q Consensus       343 ~~~~~~~C~~~~~~~-~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~  420 (436)
                      ++++.++|+..+... ..++++|||++...+..+.|.|||||||+++.     .|+||+|||.. |+..+.|++||||+.
T Consensus       145 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~  219 (238)
T 4e7n_A          145 NLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNG-----QFQGIASWGDDPCAQPHKPAAYTKVFD  219 (238)
T ss_dssp             EEECGGGGTTTCGGGCCCSCCSEEEEECTTCSCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEESGG
T ss_pred             cccCHHHHhhhcccccCCCCCCeEEeCCCCCCCccCCCCCCcceEECC-----EEEEEEEEeCCCCCCCCCCeEEEEhHH
Confidence            999999999887531 24688999998767677999999999999953     39999999987 887788999999999


Q ss_pred             cHHHHHHHHhhhhh
Q psy16044        421 YLPWIRKQINIAVD  434 (436)
Q Consensus       421 ~~~WI~~~i~~~~~  434 (436)
                      |++||+++|+...+
T Consensus       220 ~~~WI~~~i~~~~~  233 (238)
T 4e7n_A          220 HLDWIENIIAGNTD  233 (238)
T ss_dssp             GHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999987654

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=2e-45  Score=371.41  Aligned_cols=248  Identities=31%  Similarity=0.595  Sum_probs=145.3

Q ss_pred             ecCCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceE
Q psy16044         10 FARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT   89 (436)
Q Consensus        10 ~~~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~   89 (436)
                      ++..||++........||+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...     ....+.
T Consensus       305 ~~~~CG~~~~~~~~~~rIvgG~~a~~g~~Pw~v~l~~~~------~~~CGGsLIs~~~VLTAAHCv~~~-----~~~~~~  373 (565)
T 2xrc_A          305 PKLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDAS------GITCGGIYIGGCWILTAAHCLRAS-----KTHRYQ  373 (565)
T ss_dssp             CCCCCCC--------------------CCTTBCEEEESS------SCCCCCEEEETTEEEECHHHHTTC-----SSCCEE
T ss_pred             CccccCCCCCcccCCCceECCEECCCCCCCcEEEEecCC------ceeeeEEEEeCCEEEEChhhcccC-----CCcceE
Confidence            345799766544567899999999999999999997532      578999999999999999999653     245688


Q ss_pred             EEeccccCCccC-CceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCC---CCceeeeeecCCCCCCCCCCCcEEEE
Q psy16044         90 AVLGDWDRTEEE-KSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVAT  163 (436)
Q Consensus        90 v~~g~~~~~~~~-~~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~---~~~v~pi~l~~~~~~~~~~~~~~~~~  163 (436)
                      |++|.++..... ...+.+.|+++++||+|+  +..||||||||++|+.+.   ...++|||||... ....        
T Consensus       374 V~~G~~~~~~~~~~~~~~~~V~~ii~Hp~Y~~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~-~~~~--------  444 (565)
T 2xrc_A          374 IWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSP-YLFQ--------  444 (565)
T ss_dssp             EEC-------------CEEEEEEEEECTTCCTTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCT-TSSC--------
T ss_pred             EEEEEeeccCCCCCccEEEEEEEEEeCCCCCCCcccccceeeeeccccccccccccceeeeecCCcc-cccC--------
Confidence            999987765433 345678899999999998  478999999999998731   1245666666431 1122        


Q ss_pred             ecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeE
Q psy16044        164 GWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF  243 (436)
Q Consensus       164 GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~  243 (436)
                                                                                                      
T Consensus       445 --------------------------------------------------------------------------------  444 (565)
T 2xrc_A          445 --------------------------------------------------------------------------------  444 (565)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCcccccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEe
Q psy16044        244 GSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATG  323 (436)
Q Consensus       244 g~~~C~~~~~y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~G  323 (436)
                                                                                             .++.++++|
T Consensus       445 -----------------------------------------------------------------------~g~~~~v~G  453 (565)
T 2xrc_A          445 -----------------------------------------------------------------------PNDTCIVSG  453 (565)
T ss_dssp             -----------------------------------------------------------------------TTCEEEEEC
T ss_pred             -----------------------------------------------------------------------CCCEEEEEe
Confidence                                                                                   334455555


Q ss_pred             cCCCCCCCCccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec
Q psy16044        324 WGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG  403 (436)
Q Consensus       324 wg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~  403 (436)
                      ||.+... ..+..|+++.+++++  .|+..+... .....||||+...+..++|+|||||||++...+++|+|+||+|||
T Consensus       454 WG~t~~~-~~~~~L~~~~v~i~~--~C~~~~~~~-~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~~~lvGIvS~G  529 (565)
T 2xrc_A          454 WGREKDN-ERVFSLQWGEVKLIS--NCSKFYGNR-FYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWG  529 (565)
T ss_dssp             --------------CEEEEEECS--CTHHHHTTS-CCTTTEEEEEEC----------CCCEEEEECTTCCEEEEEEECC-
T ss_pred             CccCCCC-CccceeeEEeeeehH--HhHHhhccC-cCCCceEEeCCCCCCCccCCCccccceEEEeCCCcEEEEEEEeeC
Confidence            5544322 234567888888887  398877542 234559999877666789999999999998667899999999999


Q ss_pred             CCCCCCCCCeEEEeCcccHHHHHHHHhhh
Q psy16044        404 SGCAKSGYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       404 ~~c~~~~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      .+|+..+.|+|||||++|++||+++|+..
T Consensus       530 ~~C~~~~~PgVYTrVs~y~~WI~~~i~~~  558 (565)
T 2xrc_A          530 ENCGKPEFPGVYTKVANYFDWISYHVGRP  558 (565)
T ss_dssp             -----CCCCEEEEEGGGGHHHHHHHC---
T ss_pred             CCCCCCCCCEEEEEHHHHHHHHHHHhccc
Confidence            99988788999999999999999999654

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=3e-45  Score=374.33  Aligned_cols=242  Identities=31%  Similarity=0.611  Sum_probs=186.4

Q ss_pred             CCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEE
Q psy16044         12 RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAV   91 (436)
Q Consensus        12 ~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~   91 (436)
                      ..||..     ...||+||.+|..++|||+|+|+.....   ..++|+||||+++||||||||+...    ..+..+.|+
T Consensus       378 ~~Cg~~-----~~~rIvgG~~a~~~~~Pw~v~L~~~~~~---~~~~CgGsLIs~~~VLTAAHC~~~~----~~~~~~~V~  445 (625)
T 2f83_A          378 NECTTK-----IKPRIVGGTASVRGEWPWQVTLHTTSPT---QRHLCGGSIIGNQWILTAAHCFYGV----ESPKILRVY  445 (625)
T ss_dssp             CSSCSC-----CCSCCCSSSSCCTTSSTTEEEEEECSSS---SEEEEEEEECSSSEEEECGGGGSSC----CCGGGEEEE
T ss_pred             cccCCC-----CCCceECCEECCCCCCCeEEEEEEecCC---CcEEEEEEEECCCEEEEcHHhCCCC----CCCceEEEE
Confidence            368843     4579999999999999999999875321   2689999999999999999999653    134568899


Q ss_pred             eccccCCccCCceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccC
Q psy16044         92 LGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK  169 (436)
Q Consensus        92 ~g~~~~~~~~~~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~  169 (436)
                      +|..+........+.+.|+++++||+|+  ...||||||||++|+. ++.+++|||||.... ....+..++++|||.+.
T Consensus       446 ~G~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALlkL~~pv~-~~~~v~PicLp~~~~-~~~~~~~~~v~GWG~~~  523 (625)
T 2f83_A          446 SGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVN-YTDSQRPICLPSKGD-RNVIYTDCWVTGWGYRK  523 (625)
T ss_dssp             ESCSBGGGCCSSCCCEEEEEEEECTTCCBTTTBCCCEEEEESSCCC-CBTTBCCCBCCCGGG-TTCCCCCEEECBCC---
T ss_pred             EEeccCCCCCCCceEEeEEEEEECCccCcCCccccEEEEEECCccc-CCCceeeeEcCCccC-CccCCCEEEEEEecCCC
Confidence            9987765444444567899999999998  4679999999999999 788899999998532 33467889999999987


Q ss_pred             CCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC-
Q psy16044        170 PKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-  248 (436)
Q Consensus       170 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C-  248 (436)
                      ..+..+..|+++.+++++.++|+..+.. ..+.+.||||+...++.++|.|||||||++.. +++|+|+||+|||.+|+ 
T Consensus       524 ~~~~~s~~L~~~~v~i~~~~~C~~~~~~-~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~-~~~~~lvGIvS~G~~C~~  601 (625)
T 2f83_A          524 LRDKIQNTLQKAKIPLVTNEECQKRYRG-HKITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQ  601 (625)
T ss_dssp             ---CCCSBCBCCEECCCCHHHHHTTCTT-SCCCTTBCCC----------CCCTTCEEEEEE-TTEEEEEEEEEECCC---
T ss_pred             CCCcCCcccEEEEEEEcCHHHHHHHhcc-CCCCCCeEEeecCCCCCcCCCCCcccceEEEE-CCeEEEEEEEEeCCCCCC
Confidence            6666778899999999999999988753 23567999998776668999999999999974 78999999999998843 


Q ss_pred             -CCCcccccccceecCCccccC
Q psy16044        249 -GVGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       249 -~~~~~y~~v~~~~~~~~~~~~  269 (436)
                       +.+.+|++|..|+.||.+.+.
T Consensus       602 ~~~P~vyT~V~~y~~WI~~~~~  623 (625)
T 2f83_A          602 RERPGVYTNVVEYVDWILEKTQ  623 (625)
T ss_dssp             -CCCCEEEEGGGGHHHHHHTC-
T ss_pred             CCCCeEEEEHHHHHHHHHHHHh
Confidence             346899999999999987653

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=3.7e-44  Score=324.57  Aligned_cols=223  Identities=28%  Similarity=0.485  Sum_probs=177.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCce-E
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSE-V  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~-~  105 (436)
                      |+||++|..++|||+|+|+....    ..++|+||||+++||||||||+..         .+.|++|........... .
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~----~~~~CgGtLI~~~~VLTAAHC~~~---------~~~v~~g~~~~~~~~~~~~~   67 (234)
T 3s9c_A            1 VVGGDECNINEHPFLVALYTSAS----STIHCAGALINREWVLTAAHCDRR---------NIRIKLGMHSKNIRNEDEQI   67 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTE----EEEEEEEEEEETTEEEECGGGCCT---------TEEEEESCSSSSSCCTTCEE
T ss_pred             CCCCeeCCCCCCCeEEEEEECCC----CcEEEeeEEeeCCEEEEchhhcCC---------CceEEEeecccccccCCcce
Confidence            78999999999999999986521    168899999999999999999743         468999988766544333 4


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      ...+..++.||.|+  ...||||||||++|+. ++..++|||||....   ..+..++++|||.                
T Consensus        68 ~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~-~~~~v~pi~L~~~~~---~~~~~~~v~GwG~----------------  127 (234)
T 3s9c_A           68 RVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVT-YSTHIAPVSLPSRSR---GVGSRCRIMGWGK----------------  127 (234)
T ss_dssp             ECEEEEECCSSCSSTTCGGGCCEEEEESSCCC-CBTTBCCCBCCSSCC---CTTCEEEEEESSC----------------
T ss_pred             EEeeeEEEeCCCCCCCCCcCceEEEEECCccc-cCCcccccccCCCCC---CCCCeEEEEeeCC----------------
Confidence            44566677799997  4578999999999998 677899999987421   2355666666653                


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecC
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLIN  263 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~  263 (436)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (234)
T 3s9c_A          128 --------------------------------------------------------------------------------  127 (234)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEE
Q psy16044        264 GKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  343 (436)
Q Consensus       264 ~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~  343 (436)
                                                                                     +... ..+..|+.+.+.
T Consensus       128 ---------------------------------------------------------------~~~~-~~~~~l~~~~~~  143 (234)
T 3s9c_A          128 ---------------------------------------------------------------ISTT-TYPDVPHCTNIF  143 (234)
T ss_dssp             ---------------------------------------------------------------SBTT-BCCSSCEEEEEE
T ss_pred             ---------------------------------------------------------------CCCC-CCCccccccceE
Confidence                                                                           2211 224568899999


Q ss_pred             eeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccH
Q psy16044        344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYL  422 (436)
Q Consensus       344 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~  422 (436)
                      +++.++|+..+... .+.++|||++...+..+.|.|||||||+++.     .|+||+|||.. |+..+.|++||||+.|+
T Consensus       144 ~~~~~~C~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~  217 (234)
T 3s9c_A          144 IVKHKWCEPLYPWV-PADSRTLCAGILKGGRDTCHGDSGGPLICNG-----EMHGIVAGGSEPCGQHLKPAVYTKVFDYN  217 (234)
T ss_dssp             EECGGGTTTTCTTS-CTTSSEEEEECTTSSCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEEGGGGH
T ss_pred             ecCHHHhhhcccCC-CCCcceEEeecCCCCCccCCCCCCCeEEEeC-----CcEEEEEEeCCCCCCCCCCcEEEEhHHhH
Confidence            99999999987632 4689999998766677999999999999953     29999999976 88777899999999999


Q ss_pred             HHHHHHHhhh
Q psy16044        423 PWIRKQINIA  432 (436)
Q Consensus       423 ~WI~~~i~~~  432 (436)
                      +||+++|+..
T Consensus       218 ~WI~~~i~~~  227 (234)
T 3s9c_A          218 NWIQSIIAGN  227 (234)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHcCC
Confidence            9999999765

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=3.9e-44  Score=370.75  Aligned_cols=246  Identities=34%  Similarity=0.645  Sum_probs=197.0

Q ss_pred             cCCCCCCccCCC-CCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceE
Q psy16044         11 ARDCGVGIRYSH-RQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT   89 (436)
Q Consensus        11 ~~~CG~~~~~~~-~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~   89 (436)
                      ...||++...+. ...||+||..|..++|||+|+|+...     ..++|+||||+++||||||||+...    .....+.
T Consensus       545 ~~~CG~~~~~~~~~~~RIvGG~~a~~~~~PW~VsL~~~~-----~~~~CGGSLIs~~wVLTAAHCv~~~----~~~~~~~  615 (791)
T 4dur_A          545 SFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF-----GMHFCGGTLISPEWVLTAAHCLEKS----PRPSSYK  615 (791)
T ss_dssp             SCCTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTT-----SCEEEEEEEEETTEEEECGGGGSSC----CCGGGCE
T ss_pred             ccCcCCcccccccCCCceECCEECCCCCCCeEEEEEecC-----CCeEEEEEEEeCCEEEECHHHcCCc----CCCceEE
Confidence            457997654432 25799999999999999999997542     1689999999999999999999653    1346789


Q ss_pred             EEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccC
Q psy16044         90 AVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK  169 (436)
Q Consensus        90 v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~  169 (436)
                      |++|.+.........+.+.|.++++||.+    ||||||||++|+. ++..|+|||||... .....+..++++|||   
T Consensus       616 V~lG~~~~~~~~~~~q~~~V~~i~~hp~~----nDIALLkL~~pv~-~s~~V~PIcLP~~~-~~~~~g~~~~vsGWG---  686 (791)
T 4dur_A          616 VILGAHQEVNLEPHVQEIEVSRLFLEPTR----KDIALLKLSSPAV-ITDKVIPACLPSPN-YVVADRTECFITGWG---  686 (791)
T ss_dssp             EEESCCBSSSCCTTCEEEEEEEEEECTTC----CSCEEEEESSCCC-CCSSCCCCBCCCTT-CCCCTTCEEEEEECC---
T ss_pred             EEeccccccCCCCccEEEEEEEEECCCCC----CceEEEEecCccc-cCCceeeeeccCcc-cccCCCCEEEEEEeC---
Confidence            99999887766666788999999999984    8999999999999 77889999998742 223344555555555   


Q ss_pred             CCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC
Q psy16044        170 PKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG  249 (436)
Q Consensus       170 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~  249 (436)
                                                                                                      
T Consensus       687 --------------------------------------------------------------------------------  686 (791)
T 4dur_A          687 --------------------------------------------------------------------------------  686 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCC
Q psy16044        250 VGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP  329 (436)
Q Consensus       250 ~~~~y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~  329 (436)
                                                                                                  .+..
T Consensus       687 ----------------------------------------------------------------------------~t~~  690 (791)
T 4dur_A          687 ----------------------------------------------------------------------------ETQG  690 (791)
T ss_dssp             ----------------------------------------------------------------------------CC--
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        3321


Q ss_pred             CCCccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCC
Q psy16044        330 KGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKS  409 (436)
Q Consensus       330 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~  409 (436)
                       ...+..|+++.+++++.+.|+........+.+.||||+...++.++|+|||||||++.. +++|+|+||+|||.+|+..
T Consensus       691 -~~~s~~L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~-~~~~~LvGIvS~G~gC~~~  768 (791)
T 4dur_A          691 -TFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFE-KDKYILQGVTSWGLGCARP  768 (791)
T ss_dssp             --CCTTBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEE-TTEEEEEEECCTTTCCBBT
T ss_pred             -CCCCCeeEEEEEEEeCHHHhhcccccCCCCCCCeEEeccCCCCCCCCCCCcccceEEEe-CCeEEEEEEEEeCCCCCCC
Confidence             11245688889999999999875322235789999998877778999999999999985 7899999999999999987


Q ss_pred             CCCeEEEeCcccHHHHHHHHhhh
Q psy16044        410 GYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       410 ~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      +.|+|||||+.|++||+++|+++
T Consensus       769 ~~PgVYTrVs~y~dWI~~~i~~N  791 (791)
T 4dur_A          769 NKPGVYVRVSRFVTWIEGVMRNN  791 (791)
T ss_dssp             TBCEEEEEGGGTHHHHHHHHHHC
T ss_pred             CCCeEEEEHHHHHHHHHHHHHhC
Confidence            88999999999999999999753

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=1.2e-44  Score=325.55  Aligned_cols=216  Identities=27%  Similarity=0.513  Sum_probs=182.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCce-E
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSE-V  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~-~  105 (436)
                      |+||++|..++|||+|+|+...      .++|+||||+++||||||||+...     ....+.|++|.++........ +
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLI~~~~VLTAAHC~~~~-----~~~~~~V~~G~~~~~~~~~~~~~   69 (225)
T 1a7s_A            1 IVGGRKARPRQFPFLASIQNQG------RHFCGGALIHARFVMTAASCFQSQ-----NPGVSTVVLGAYDLRRRERQSRQ   69 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGC---------CCSEEEEESCSSTTSCCTTTCE
T ss_pred             CCCCEECCCCCCCcEEEEecCC------CcEEEEEEeeCCEEEEchhccCCC-----CCCceEEEEeeeECCCCCCccee
Confidence            6899999999999999998652      689999999999999999999652     345689999998776544333 7


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      .+.|++++.| +|+  ...||||||||++|+. ++..++|+|||.... ....+..++++|||.+...+..+..|++..+
T Consensus        70 ~~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~-~~~~v~pi~L~~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  146 (225)
T 1a7s_A           70 TFSISSMSEN-GYDPQQNLNDLMLLQLDREAN-LTSSVTILPLPLQNA-TVEAGTRCQVAGWGSQRSGGRLSRFPRFVNV  146 (225)
T ss_dssp             EEEEEEEECS-SCBTTTTBSCCEEEEESSCCC-CBTTBCCCCCCCTTC-CCCTTCEEEEEESCCSSTTCCCCSSCEEEEE
T ss_pred             EEeEEEEecc-cccCCCCcCCEEEEEcCCccc-CCCceeEEEcCCCcC-CCCCCCEEEEEeCCcCCCCCCcccccceeee
Confidence            8899999999 997  4679999999999999 778899999998643 3457889999999998877777788999999


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC-Ccccccccceec
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV-GIRYSHRQPRLI  262 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~-~~~y~~v~~~~~  262 (436)
                      ++++.+.|+.          .|+|++...+..+.|.|||||||++.   +  +|+||+|||...|+. +.+|++|..|..
T Consensus       147 ~~~~~~~C~~----------~~~Ca~~~~~~~~~C~GDSGgPl~~~---g--~l~Gi~S~g~~~C~~~p~vyt~V~~~~~  211 (225)
T 1a7s_A          147 TVTPEDQCRP----------NNVCTGVLTRRGGICNGDGGTPLVCE---G--LAHGVASFSLGPCGRGPDFFTRVALFRD  211 (225)
T ss_dssp             EECCGGGSCT----------TEEEEECSSSSCBCCTTCTTCEEEET---T--EEEEEEEEECSSTTSSCEEEEEGGGGHH
T ss_pred             EECCHHHhcc----------CceEEeccCCCCCcccCCCcchheeC---C--EEEEEEEEccCCcCCCCcEEEEhHHhHH
Confidence            9999999965          79999987766899999999999985   2  799999999555765 789999999999


Q ss_pred             CCccccCCC
Q psy16044        263 NGKESIRGA  271 (436)
Q Consensus       263 ~~~~~~~~~  271 (436)
                      ||.+.+...
T Consensus       212 WI~~~~~~~  220 (225)
T 1a7s_A          212 WIDGVLNNP  220 (225)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHhcCC
Confidence            998877543

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=1.3e-44  Score=325.18  Aligned_cols=218  Identities=25%  Similarity=0.420  Sum_probs=181.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|.          +.|+||||+++||||||||+....    ....+.|++|..+....  ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~----------~~CgGtLI~~~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~--~~~~   64 (224)
T 3beu_A            1 VVGGTRAAQGEFPFMVRLS----------MGCGGALYAQDIVLTAAHCVSGSG----NNTSITATGGVVDLQSS--SAVK   64 (224)
T ss_dssp             CBTCEECCTTTSTTEEEET----------TTEEEEEEETTEEEECGGGSCSSE----EBCCCEEEESCSBTTCT--TCEE
T ss_pred             CCCCeECCCCCCCEEEEEC----------CceeEEEeeCCEEEEChhhcCCCC----CcceEEEEeeEeecCCC--CceE
Confidence            6899999999999999984          359999999999999999997531    23567899998776543  2367


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.+.++++||+|+  ...||||||||++|+.     +.|+||+....   ..+..++++|||.+...+..+..|++..++
T Consensus        65 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~-----~~~i~l~~~~~---~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~  136 (224)
T 3beu_A           65 VRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTA---YNQGTFTVAGWGANREGGSQQRYLLKANVP  136 (224)
T ss_dssp             EEEEEEEECTTCCCGGGSCCCEEEEESSCCC-----SCCCEECCSST---TSSSEEEEEESSCSSTTCCCCSBCEEEEEE
T ss_pred             EEEEEEEeCCCcCCCcCCCCEEEEEeCCCCC-----CCccccccccc---cCCCEEEEEecCccCCCCcccceeeEeeCc
Confidence            8899999999997  4689999999999986     35788886422   234589999999988777777889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCcccccccceec
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGIRYSHRQPRLI  262 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~~y~~v~~~~~  262 (436)
                      +++.+.|+..+.. ....+.|||++...+..+.|.|||||||++...+++|+|+||+|||.+|+  +.+.+|++|.+|..
T Consensus       137 ~~~~~~C~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~  215 (224)
T 3beu_A          137 FVSDAACRSSSSF-ILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFAS  215 (224)
T ss_dssp             EECHHHHHHHCSS-CCCGGGEEEECCSSSSCBCCTTCTTCEEEEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHH
T ss_pred             ccCHHHhhhhcCC-ccCCCCeEEeccCCCCCcCCCCcCCCeeEEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHH
Confidence            9999999988753 23456899999776668999999999999986678999999999998744  24679999999999


Q ss_pred             CCccccC
Q psy16044        263 NGKESIR  269 (436)
Q Consensus       263 ~~~~~~~  269 (436)
                      ||.+.+.
T Consensus       216 WI~~~~~  222 (224)
T 3beu_A          216 AIASAAR  222 (224)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9987654

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=1.5e-44  Score=327.49  Aligned_cols=221  Identities=21%  Similarity=0.377  Sum_probs=188.4

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+...      .++|+||||+++||||||||+...     ....+.|++|..+....   .+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLIs~~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~---~~~   66 (235)
T 3h7t_A            1 IIGGKKSDITKEPWAVGVLVDE------KPFCGGSILTANFVITAAQCVDGT-----KPSDISIHYGSSYRTTK---GTS   66 (235)
T ss_dssp             CBTCEECCTTTSTTEEEEEETT------SCCEEEEESSSSEEEECHHHHTTC-----CGGGEEEEESCSBSSSS---SEE
T ss_pred             CCCCEECCCCCCCcEEEEecCC------CceEeEEEeeCCEEEECHHHCCCC-----CCCeeEEEcCccccccC---Cce
Confidence            7899999999999999998753      678999999999999999999642     35678999998876532   377


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCC-ceeeeeecCCCCCCCCCCCcEEEEecCccCCCC-Cccccceeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDK-GVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~-~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~-~~~~~l~~~~  182 (436)
                      +.+.++++| .|+  ...||||||+|++|+. ++. .++|||||... .....+..++++|||.+...+ ..+..|+++.
T Consensus        67 ~~v~~i~~h-~y~~~~~~~DiAll~L~~~v~-~~~~~v~pi~Lp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~  143 (235)
T 3h7t_A           67 VMAKKIYIV-RYHPLTMQNNYAVIETEMPIK-LDDKTTKKIELPSLL-YDPEPDTSVLVSGWGSTNFKSLEYSGDLMEAN  143 (235)
T ss_dssp             EEEEEEEEC-SCBTTTTBTCCEEEEESSCCC-CCSSSCCCCBCCCTT-CCCCTTCEEEEEECCCSSTTCCCCCSBCEEEE
T ss_pred             eeeeeEEee-ecCCCCCCCCeEEEEeccccc-cCCccccceecCccc-cCCCCCCeEEEEecCCCCCCCCchhHHHhhCC
Confidence            899999999 997  4689999999999999 566 89999999864 335678999999999988665 6678899999


Q ss_pred             eeccchhhhhhhcCCC---cCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccc
Q psy16044        183 VPLHNISVCRDKYGDS---VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHR  257 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v  257 (436)
                      +++++.+.|+..+...   ....+.||||+...+..+.|.|||||||++++     .|+||+|||.+ |+  .+.+|++|
T Consensus       144 ~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~-C~~~~p~vyt~v  217 (235)
T 3h7t_A          144 FTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQNG-----TLVGVASYISS-MPSEFPSVFLRV  217 (235)
T ss_dssp             EEEECHHHHHHHHHTTTCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEETT-----EEEEEECCCTT-CCTTSCEEEEEG
T ss_pred             CceeCHHHHHHHhhhcccCccccCCeEecCCCCCCCccccCCCCCceeeCC-----eEEEEEEecCC-CCCCCCceEEEH
Confidence            9999999999887542   23567999999887779999999999999843     39999999988 75  67799999


Q ss_pred             cceecCCccccCC
Q psy16044        258 QPRLINGKESIRG  270 (436)
Q Consensus       258 ~~~~~~~~~~~~~  270 (436)
                      .+|..||.+.+..
T Consensus       218 ~~~~~WI~~~i~~  230 (235)
T 3h7t_A          218 GYYVLDIKDIISG  230 (235)
T ss_dssp             GGGHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999887754

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=1.4e-44  Score=323.38  Aligned_cols=212  Identities=30%  Similarity=0.546  Sum_probs=181.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...     ....+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLI~~~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~   69 (218)
T 2z7f_E            1 IVGGRRARPHAWPFMVSLQLRG------GHFCGATLIAPNFVMSAAHCVANV-----NVRAVRVVLGAHNLSRREPTRQV   69 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECHHHHTTS-----CGGGCEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCccCcEEEEEeCC------CcEEEEEEccCCEEEEcHHhcCCC-----CcCcEEEEEeceecCCCCCceEE
Confidence            6899999999999999998752      689999999999999999999653     24568999999887766666688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|++++.| +|+  ...||||||||++|+. ++..++|||||.... ....+..++++|||.+...+..+..|++..++
T Consensus        70 ~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~-~~~~v~picL~~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~  146 (218)
T 2z7f_E           70 FAVQRIFEN-GYDPVNLLNDIVILQLNGSAT-INANVQVAQLPAQGR-RLGNGVQCLAMGWGLLGRNRGIASVLQELNVT  146 (218)
T ss_dssp             EEEEEEEES-CCBTTTTBSCCEEEEESSCCC-CSSSCCCCCCCCTTC-CCCTTCEEEEEESSBCSSSCCBCSBCEEEEEE
T ss_pred             EEEEEEEcc-CCCCCCCCCCEEEEEECCcCc-CCCceeccCcCCCCC-CCCCCCEEEEEEeCCCCCCCCccchheEeeeE
Confidence            999999999 997  4689999999999999 788899999998643 34578899999999998776677889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Cccccccccee
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQPRL  261 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~~  261 (436)
                      ++ .+.|...          ++|++...+..++|.|||||||+++.     +|+||+||+.+.|+.   +.+|++|..|.
T Consensus       147 ~~-~~~C~~~----------~~Ca~~~~~~~~~C~GDSGgPl~~~~-----~l~Gi~S~~~g~C~~~~~p~vyt~V~~~~  210 (218)
T 2z7f_E          147 VV-TSLCRRS----------NVCTLVRGRQAGVCFGDSGSPLVCNG-----LIHGIASFVRGGCASGLYPDAFAPVAQFV  210 (218)
T ss_dssp             EE-CTTCCTT----------SEEEECTTSCCBCCTTCTTCEEEETT-----EEEEEEEEESSSTTCSSSCEEEEEGGGGH
T ss_pred             Ee-hhHcCcc----------eeeeccCCCCCeeCCCcCCCceEEcc-----EEEEEEEeCCccCCCCCCCeEEEEHHHhH
Confidence            99 8999753          89999877668999999999999842     699999994433764   57999999999


Q ss_pred             cCCcccc
Q psy16044        262 INGKESI  268 (436)
Q Consensus       262 ~~~~~~~  268 (436)
                      .||.+.+
T Consensus       211 ~WI~~~~  217 (218)
T 2z7f_E          211 NWIDSII  217 (218)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998754

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=3.3e-44  Score=323.86  Aligned_cols=216  Identities=26%  Similarity=0.462  Sum_probs=181.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc-CCceE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE-EKSEV  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~-~~~~~  105 (436)
                      |+||++|..++|||+|+|+. +      .++|+||||+++||||||||+..         .+.|++|..+.... ....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~------~~~CgGsLIs~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~~~   64 (231)
T 2aiq_A            1 VIGGDECNINEHRFLALVYA-N------GSLCGGTLINQEWVLTARHCDRG---------NMRIYLGMHNLKVLNKDALR   64 (231)
T ss_dssp             CBSCEECCTTSCTTEEEEEE-T------TEEEEEEECSSSEEEECGGGCCS---------SCEEEESCSCTTSCCTTCEE
T ss_pred             CCCCeECCCCCCCeEEEEEc-C------CCeEEEEEEeCCEEEEcHHcCCC---------CCEEEEecccccccCCCceE
Confidence            78999999999999999973 1      58899999999999999999854         35799998876543 23457


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCC-CCccccceeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIR  182 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~-~~~~~~l~~~~  182 (436)
                      .+.+.+++.||+|+  ...||||||||++|+. ++..++|||||....   ..+..++++|||.+... ...+..|+++.
T Consensus        65 ~~~v~~~~~hp~y~~~~~~~DIALl~L~~~v~-~~~~v~picL~~~~~---~~~~~~~v~GwG~~~~~~~~~~~~l~~~~  140 (231)
T 2aiq_A           65 RFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVR-NSAHIAPLSLPSNPP---SVGSVCRIMGWGTITSPNATLPDVPHCAN  140 (231)
T ss_dssp             ECEEEEECCSSCCSSSTTTTCCEEEEESSCCC-CBTTBCCCCCCSSCC---CTTCEEEEEESSCSSSSSCCCCSSCEEEE
T ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEecCCCC-CCCcEEeeECCCCCC---CCCCEEEEEeCCccCCCCCccCchhhhcc
Confidence            78899999999997  4689999999999999 778899999998532   46889999999987644 34577899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Ccccccccc
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQP  259 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~  259 (436)
                      +++++.+.|+..+..   ..+.|||++...+..+.|.|||||||+++   +  +|+||+|||...|+.   +.+|++|..
T Consensus       141 ~~~~~~~~C~~~~~~---~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~~~C~~~~~p~vyt~V~~  212 (231)
T 2aiq_A          141 INILDYAVCQAAYKG---LAATTLCAGILEGGKDTCKGDSGGPLICN---G--QFQGILSVGGNPCAQPRKPGIYTKVFD  212 (231)
T ss_dssp             EEEECHHHHHHHCTT---CCSSEEEEECTTCSCBCCTTCTTCEEEET---T--EEEEEEEEECSSTTCTTCCEEEEEGGG
T ss_pred             ceecchhhhhhhhcC---CCcCcEEeccCCCCCcccCCcCCCcEEEC---C--EEEEEEEEeCCCCCCCCCCEEEEEHHH
Confidence            999999999988754   56799999876666899999999999984   2  699999999555654   679999999


Q ss_pred             eecCCccccCC
Q psy16044        260 RLINGKESIRG  270 (436)
Q Consensus       260 ~~~~~~~~~~~  270 (436)
                      |..||.+.+..
T Consensus       213 ~~~WI~~~~~~  223 (231)
T 2aiq_A          213 YTDWIQSIISG  223 (231)
T ss_dssp             GHHHHHHHHHT
T ss_pred             HHHHHHHHHcC
Confidence            99999877653

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=9.4e-44  Score=321.92  Aligned_cols=219  Identities=27%  Similarity=0.427  Sum_probs=181.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceE-
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEV-  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~-  105 (436)
                      |+||+++..++|||+|+|+...      .++|+||||+++||||||||+..         .+.|++|...........+ 
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGtLI~~~~VLTAAHC~~~---------~~~v~~g~~~~~~~~~~~~~   65 (234)
T 3s69_A            1 VIGGDECNINEHRSLVAFFNST------GFFCSGTLINEEWVLTAAHCDNT---------NFQMKLGVHSKKVLNEDEQT   65 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEECSS------CEEEEEEEEETTEEEECGGGCCS---------SCEEEESCCCSSSCCTTCEE
T ss_pred             CCCCccCCCCCCceEEEEeeCC------CeEEeEEEeeCCEEEEchhhCCC---------CceEEecccccccccCCcce
Confidence            7899999999999999997642      68999999999999999999743         3678899877654443333 


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCC-Cccccceeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIR  182 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~-~~~~~l~~~~  182 (436)
                      ...+..++.||.|+  ...||||||||++|+. ++..++|||||...   ...+..++++|||.+.... ..+..|+...
T Consensus        66 ~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~-~~~~v~pi~l~~~~---~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~  141 (234)
T 3s69_A           66 RNPKEKFICPNKKNDEVLDKDIMLIKLDSRVS-NSEHIVPLSLPSSP---PSVGSVCHIMGWGSITPIKVTYPDVPYCAY  141 (234)
T ss_dssp             ECEEEEEECTTCCTTCTTSSCCEEEEESSCCC-CBTTBCCCCCCSSC---CCTTCEEEEEESSCSSSSSCCCCSSCEEEE
T ss_pred             eeceEEEECCCccCCCCCcccEEEEeeCCcCC-CCCcceeeecCCCC---CCCCCEEEEEECCCCCCCCcCcccccceeE
Confidence            44566677799997  4679999999999999 78889999999853   2348899999999887544 5567899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Ccccccccc
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQP  259 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~  259 (436)
                      +.+++.+.|+..+.. ....+.+||++...+..+.|.|||||||++..     .|+||+|||.+.|+.   +.+|++|.+
T Consensus       142 ~~~~~~~~C~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~  215 (234)
T 3s69_A          142 INLLDDAVCQAGYPE-LLTEYRTLCAGILEGGKDTCGGDSGGPLICNG-----QFQGIVSFGAHPCGQGLKPGVYTKVFD  215 (234)
T ss_dssp             EEEECHHHHHHHCTT-CCTTSCEEEEECTTCSCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEEGGG
T ss_pred             EeecCHHHHhhhccc-ccCCcceEeccCCCCCCccCCCCCccceEEcC-----EEEEEEEEcccccCCCCCCcEEeeHHH
Confidence            999999999998764 33456899999877778999999999999853     399999999876764   579999999


Q ss_pred             eecCCccccCC
Q psy16044        260 RLINGKESIRG  270 (436)
Q Consensus       260 ~~~~~~~~~~~  270 (436)
                      |..||.+.+..
T Consensus       216 ~~~WI~~~i~~  226 (234)
T 3s69_A          216 YNHWIQSIIAG  226 (234)
T ss_dssp             GHHHHHHHHHT
T ss_pred             HHHHHHHHhcC
Confidence            99999877653

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.1e-44  Score=331.54  Aligned_cols=216  Identities=20%  Similarity=0.298  Sum_probs=167.8

Q ss_pred             CcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEee
Q psy16044         30 GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPV  109 (436)
Q Consensus        30 G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v  109 (436)
                      |..+..++|||+|+|+...     ..++|+||||+++||||||||+..       ...+.|++|.++...   ..+.+.|
T Consensus        56 g~~a~~~~~Pw~v~l~~~~-----~~~~CgGtLI~~~~VLTAAHC~~~-------~~~~~V~~G~~~~~~---~~~~~~v  120 (283)
T 3f1s_B           56 KRAPDLQDLPWQVKLTNSE-----GKDFCGGVIIRENFVLTTAKCSLL-------HRNITVKTYFNRTSQ---DPLMIKI  120 (283)
T ss_dssp             -------CCTTEEEEECTT-----SCEEEEEEEEETTEEEECHHHHTS-------CSSCEEEECTTC-CC---CCEEEEE
T ss_pred             CccccccccCCEEEEEecC-----CCeeeccEEecCCEEEEcHHhcCc-------cCceEEEEeeeeCCC---CcEEEEe
Confidence            9999999999999998632     168999999999999999999954       246789999865533   4578899


Q ss_pred             eEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCC--CCCCCCCcEEEEecCccCCCCCccccceeeeeec
Q psy16044        110 ERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADK--RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  185 (436)
Q Consensus       110 ~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~--~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~  185 (436)
                      +++++||+|+  +..||||||||++|+. ++.+++|||||....  ..+..+..++++|||.  ..+..+..|+++.+++
T Consensus       121 ~~i~~Hp~y~~~~~~nDIALl~L~~pv~-~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~  197 (283)
T 3f1s_B          121 THVHVHMRYDADAGENDLSLLELEWPIQ-CPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTL  197 (283)
T ss_dssp             EEEEECTTCBTTTTBTCCEEEEESSCCC-TTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBC--C-------CEEEEEEE
T ss_pred             EEEEECCCCCCCCCCCCEEEEEeCCccc-CCCCEEeEECCCCccccccccCCCEEEEEECCC--CCCCCCceeeEEEEeE
Confidence            9999999997  4689999999999999 788999999998531  2345688999999998  3455677899999999


Q ss_pred             cchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccceecC
Q psy16044        186 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPRLIN  263 (436)
Q Consensus       186 ~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~~~~  263 (436)
                      ++.+.|+..+..  ..+++||||+...+   .|.|||||||++. .+++|+|+||+|||. +|.  .+.+||+|..|+.|
T Consensus       198 ~~~~~C~~~~~~--~~~~~~~Ca~~~~~---~~~gDSGgPlv~~-~~~~~~l~GIvS~g~-c~~~~~p~vyt~V~~y~~W  270 (283)
T 3f1s_B          198 VEGEECGQVLNV--TVTTRTYCERSSVA---AMHWMDGSVVTRE-HRGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLW  270 (283)
T ss_dssp             ECHHHHHHHHTS--CCCTTEEEEECSSC---GGGBCTTCEEEEE-CSSCEEEEEEECCCS-GGGCSSEEEEEEGGGGHHH
T ss_pred             eCHHHHhhhhcC--CCCCCeEcccCCCC---CCCCCCCCcEEEE-ECCEEEEEEEEEeCC-CCCCCcceEEEEhHHhHHH
Confidence            999999998864  35679999985543   5677999999997 578999999999985 343  34599999999999


Q ss_pred             CccccCC
Q psy16044        264 GKESIRG  270 (436)
Q Consensus       264 ~~~~~~~  270 (436)
                      |.+.+..
T Consensus       271 I~~~~~~  277 (283)
T 3f1s_B          271 FKQIMNA  277 (283)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhhc
Confidence            9887764

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=1.9e-43  Score=318.82  Aligned_cols=222  Identities=27%  Similarity=0.470  Sum_probs=181.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+......  ..++|+||||+++||||||||+.+       ...+.|++|.......   .+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~--~~~~CgGtLIs~~~VLTAAHC~~~-------~~~~~v~~G~~~~~~~---~~~   68 (230)
T 2hlc_A            1 IINGYEAYTGLFPYQAGLDITLQDQ--RRVWCGGSLIDNKWILTAAHCVHD-------AVSVVVYLGSAVQYEG---EAV   68 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTS--CEEEEEEEEEETTEEEECHHHHTT-------EEEEEEEESCSBTTCC---SEE
T ss_pred             CCCCeECCCCCCCcEEEEEEEecCC--CCEEEEEEEeeCCEEEECHHHCCC-------CcceEEEEeeeecCCC---CeE
Confidence            6899999999999999998753222  268999999999999999999864       3567899998766542   377


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCC-CCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~-~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      +.++++++||+|+  ...||||||||+ |+. ++..++|||||..... ....+..++++|||.+....   ..|++..+
T Consensus        69 ~~v~~i~~hp~y~~~~~~~DiALl~L~-~~~-~~~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~~---~~l~~~~~  143 (230)
T 2hlc_A           69 VNSERIISHSMFNPDTYLNDVALIKIP-HVE-YTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDT---VILQYTYN  143 (230)
T ss_dssp             EECSEEEECTTCBTTTTBTCCEEEECS-CCC-CCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCC---CBCEEEEE
T ss_pred             EEEEEEEECCCCCCCCccccEEEEEec-CCC-cCCcEeeeEcCCccccccccCCcEEEEEeeeecCCCC---ceeEEEEE
Confidence            8999999999997  468999999999 998 7788999999985321 23467889999999876443   67999999


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcC-CCCCC--Ccccccccce
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GYCGV--GIRYSHRQPR  260 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~-~~C~~--~~~y~~v~~~  260 (436)
                      .+++.+.|+..+... ...+.|||++... ..++|.|||||||++..   +++|+||+|||. ..|..  +.+|++|..+
T Consensus       144 ~~~~~~~C~~~~~~~-~~~~~~~Ca~~~~-~~~~C~GDSGgPl~~~~---~~~l~Gi~S~g~~~~C~~~~p~vyt~V~~~  218 (230)
T 2hlc_A          144 LVIDNDRCAQEYPPG-IIVESTICGDTSD-GKSPCFGDSGGPFVLSD---KNLLIGVVSFVSGAGCESGKPVGFSRVTSY  218 (230)
T ss_dssp             EEECHHHHHTTSCTT-SSCTTEEEECCTT-SCBCCTTCTTCEEEEGG---GTEEEEEEEECCTTCTTSCCCEEEEEGGGG
T ss_pred             EEeCHHHhhhhhCCC-cccCCeEEecCCC-CCCcCCCCCCCeeEECc---CCEEEEEEEEeCCCCCCCCCCCEEEEhHHh
Confidence            999999999887542 3567999998744 47899999999999863   348999999997 35753  5789999999


Q ss_pred             ecCCccccCC
Q psy16044        261 LINGKESIRG  270 (436)
Q Consensus       261 ~~~~~~~~~~  270 (436)
                      ..||.+.+..
T Consensus       219 ~~WI~~~~~~  228 (230)
T 2hlc_A          219 MDWIQQNTGI  228 (230)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHhhCc
Confidence            9999887653

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=5.8e-43  Score=313.76  Aligned_cols=215  Identities=32%  Similarity=0.575  Sum_probs=180.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+..... +  .++|+||||+++||||||||+...     ....+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~-~--~~~CgGtLIs~~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~   72 (221)
T 1fuj_A            1 IVGGHEAQPHSRPYMASLQMRGNP-G--SHFCGGTLIHPSFVLTAAHCLRDI-----PQRLVNVVLGAHNVRTQEPTQQH   72 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBT-T--CCCEEEEEEETTEEEECGGGGSSS-----CGGGEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCcCCEEEEEEecCC-C--CEEEEEEEecCCEEEEchHhcCcC-----CCCceEEEEeeeeccCCCCceEE
Confidence            689999999999999999875321 1  588999999999999999999763     23568999999887766666788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|.+++.| +|+  ...||||||||++|+. ++..++|||||.... ....+..++++|||.+...+..+..|++..++
T Consensus        73 ~~v~~i~~h-~y~~~~~~~DiALl~L~~~~~-~~~~v~picL~~~~~-~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  149 (221)
T 1fuj_A           73 FSVAQVFLN-NYDAENKLNDILLIQLSSPAN-LSASVATVQLPQQDQ-PVPHGTQCLAMGWGRVGAHDPPAQVLQELNVT  149 (221)
T ss_dssp             EEEEEEEEC-CCBTTTTBCCCEEEEESSCCC-CCSSCCCCBCCCTTC-CCCTTCEEEEEESSBSCSSSCBCSBCEEEEEE
T ss_pred             EEEEEEEeC-CCCCCCCcccEEEEEeCCccc-cCCcceeeECCCCcC-CCCCCCEEEEEEeCCCCCCCCHHHHhhcccce
Confidence            999999999 997  4689999999999999 788899999998643 34578999999999988766677889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Cccccccccee
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQPRL  261 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~~  261 (436)
                      ++ ...|..          .++|++...+..+.|.|||||||+++   +  +|+||+||+...|+.   +.+|++|..|.
T Consensus       150 ~~-~~~C~~----------~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~  213 (221)
T 1fuj_A          150 VV-TFFCRP----------HNICTFVPRRKAGICFGDSGGPLICD---G--IIQGIDSFVIWGCATRLFPDFFTRVALYV  213 (221)
T ss_dssp             EE-CTTCCT----------TEEEEECSSSSCBCCTTCTTCEEEET---T--EEEEEEEECSSSTTCSSSCEEEEEGGGGH
T ss_pred             EE-eeecCC----------ceeeeccCCCCCCCCCCCCCCeeEEC---C--EEeEEEEEeccCCCCCCCCcEEEeHHHHH
Confidence            99 888865          38999987766899999999999984   2  699999996522653   67999999999


Q ss_pred             cCCcccc
Q psy16044        262 INGKESI  268 (436)
Q Consensus       262 ~~~~~~~  268 (436)
                      .||.+.+
T Consensus       214 ~WI~~~i  220 (221)
T 1fuj_A          214 DWIRSTL  220 (221)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998754

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=4.3e-43  Score=316.29  Aligned_cols=222  Identities=20%  Similarity=0.322  Sum_probs=185.2

Q ss_pred             eCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEE
Q psy16044         28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRI  107 (436)
Q Consensus        28 ~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~  107 (436)
                      .||++|.+++|||+|+|+.....   ..++|+||||+++||||||||+...     ....+.|++|..+...... .+.+
T Consensus         1 ~gG~~a~~~~~Pw~v~l~~~~~~---~~~~CgGtLI~~~~VLTAAHC~~~~-----~~~~~~v~~g~~~~~~~~~-~~~~   71 (228)
T 3h7o_A            1 KGGEKTDIKQVPWTVAVRTYPGE---ESLTCGGAILSQWFVLTAAHCVFDQ-----KPETIVIQYESTNLWEDPG-KSDP   71 (228)
T ss_dssp             CCCEECCGGGSTTEEEEEECGGG---CCEEEEEEESSSSEEEECHHHHTTS-----CGGGCEEEESCSBTTTBCC-EEEC
T ss_pred             CCCccCCcCCCCeEEEEeecCCC---CceEeeeEEeeCCEEEEcHHhcccC-----CCCcEEEEecccccccCCC-ceee
Confidence            37999999999999999875421   1348999999999999999999652     3567899999887664333 3778


Q ss_pred             eeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCC-ceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        108 PVERIRVHEEFH--NYHHDIALLKLSRPTSARDK-GVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       108 ~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~-~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      .+++++.| .|+  ...||||||||++|+. ++. .++|+|||... .....+..++++|||.+...+..+..|+++.++
T Consensus        72 ~v~~i~~h-~y~~~~~~~DIALl~L~~~v~-~~~~~v~pi~lp~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~  148 (228)
T 3h7o_A           72 YVSHVYLS-FYRQETMENDIAILELSRPLK-LDGLKSKPAKLPDIE-FRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLT  148 (228)
T ss_dssp             CEEEEEES-SCBTTTTBTCCEEEEESSCCC-CCSSSSCCCBCCCTT-CCCCTTCEEEEEECCCSSCSCGGGGBCEEEEEE
T ss_pred             eEEEEEcc-ccCCCCccCCEEEEEECCccc-ccccccccccCCccc-cCCCCCCeeEEEEEecCCCCCCcccccccceeE
Confidence            89999999 997  4689999999999999 566 89999999863 335678999999999988777777889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccceec
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPRLI  262 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~~~  262 (436)
                      +++.+.|+..+.. ....+.+||++...  .+.|.|||||||+++.     .|+||+|||.+ |+  .+.+|++|..|..
T Consensus       149 ~~~~~~C~~~~~~-~~~~~~~~Ca~~~~--~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~-c~~~~p~vyt~v~~~~~  219 (228)
T 3h7o_A          149 VVDLDECRTKYGP-IFLSLQVFCAQKVG--VSLESGDAGDPTVQQD-----TLVGVAAYFPK-RPEGAPEVFTKVGSYVS  219 (228)
T ss_dssp             EECHHHHHHHHTT-SCCCSSEEEEECTT--CCCCGGGTTCEEEETT-----EEEEEECCCTT-CCTTCCEEEEEGGGTHH
T ss_pred             EEcHHHHHHHhcC-ccCCceEEecCCCC--CcCCCCCCCCcceecC-----eEEEEEeecCc-CCCCCCcEEEEHHHHHH
Confidence            9999999998865 33567999998765  7899999999999843     39999999987 54  5679999999999


Q ss_pred             CCccccCC
Q psy16044        263 NGKESIRG  270 (436)
Q Consensus       263 ~~~~~~~~  270 (436)
                      ||.+.+.+
T Consensus       220 WI~~~i~~  227 (228)
T 3h7o_A          220 WIQDIIKK  227 (228)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhc
Confidence            99887653

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=8.6e-42  Score=322.74  Aligned_cols=214  Identities=21%  Similarity=0.300  Sum_probs=177.9

Q ss_pred             CcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEee
Q psy16044         30 GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPV  109 (436)
Q Consensus        30 G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v  109 (436)
                      |+.+..++|||+|+|+...     ..++|+||||+++||||||||+..       ...+.|++|......   ..+.+.|
T Consensus        97 G~~a~~~~~Pw~v~l~~~~-----~~~~CgGtLIs~~~VLTAAHC~~~-------~~~~~V~~G~~~~~~---~~~~~~v  161 (317)
T 3h5c_B           97 KRAPDLQDLPWQVKLTNSE-----GKDFCGGVIIRENFVLTTAKCSLL-------HRNITVKTYFNRTSQ---DPLMIKI  161 (317)
T ss_dssp             CSSCCTTCCTTEEEEECSS-----SCEEEEEEEEETTEEEECHHHHHS-------CSSCEEEECTTSCTT---SCEEEEE
T ss_pred             cccCccCCCCcEEEEeccC-----CceeeeeEEeeCCEEEEChHhcCc-------CCceEEEEeeecCCC---CcEEEEe
Confidence            8999999999999998532     168999999999999999999854       245789999875533   4578899


Q ss_pred             eEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCC--CCCCCCCcEEEEecCccCCCCCccccceeeeeec
Q psy16044        110 ERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADK--RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  185 (436)
Q Consensus       110 ~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~--~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~  185 (436)
                      +++++||+|+  +..||||||||++|+. ++.+++|||||....  ..+..+..++++|||.  ..+..+..|+++.+++
T Consensus       162 ~~i~~Hp~y~~~~~~~DIALl~L~~pv~-~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~  238 (317)
T 3h5c_B          162 THVHVHMRYDADAGENDLSLLELEWPIQ-CPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTL  238 (317)
T ss_dssp             EEEEECTTCBTTTTBSCCEEEEESSCCC-TTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCT--TCCSSSCCCBCCEEEE
T ss_pred             eEEEECCCCCCCCCCCCeEEEEeCCccc-CCCCccceeCCCcccccccccCCCeEEEEecCC--CCCCCCccceEEEEEE
Confidence            9999999997  4679999999999999 788999999998531  2345688999999998  3456677899999999


Q ss_pred             cchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccceecC
Q psy16044        186 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPRLIN  263 (436)
Q Consensus       186 ~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~~~~  263 (436)
                      ++.++|+..+..  ..++.||||+...   +.|.|||||||++. .+++|+|+||+|||. +|.  .+.+|++|..|..|
T Consensus       239 ~~~~~C~~~~~~--~~~~~~~Ca~~~~---~~~~gDsGgPl~~~-~~~~~~l~Gi~S~g~-~~~~~~p~vyt~V~~y~~W  311 (317)
T 3h5c_B          239 VEGEECGQVLNV--TVTTRTYCERSSV---AAMHWMDGSVVTRE-HRGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLW  311 (317)
T ss_dssp             ECHHHHHHHHTC--CCCTTEEEEECSC---CCCCCCTTCEEEEE-ETTEEEEEEEECCCC-SSCCTTEEEEEEGGGCHHH
T ss_pred             ECHHHHhhhhcC--cCCCceeECCCCC---CCcCCCCCCCEEEe-cCCEEEEEEEEEECC-CCCCCcceEEEEhHHhHHH
Confidence            999999998864  3567999998543   46789999999997 478999999999985 343  34599999999999


Q ss_pred             Ccccc
Q psy16044        264 GKESI  268 (436)
Q Consensus       264 ~~~~~  268 (436)
                      |.+.+
T Consensus       312 I~~~i  316 (317)
T 3h5c_B          312 FKQIM  316 (317)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98754

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=100.00  E-value=5.5e-40  Score=330.84  Aligned_cols=235  Identities=22%  Similarity=0.341  Sum_probs=173.1

Q ss_pred             ecCCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceE
Q psy16044         10 FARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT   89 (436)
Q Consensus        10 ~~~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~   89 (436)
                      ....||.+         .++|.++.+++|||+|+|+...      .++|+||||+++||||||||+...    .....+.
T Consensus       216 ~~~~CG~~---------~~~g~~a~~~~~Pw~v~l~~~~------~~~CgGsLIs~~~VLTAAHC~~~~----~~~~~~~  276 (509)
T 2odp_A          216 TDTICGVG---------NMSANASDQERTPWHVTIKPKS------QETCRGALISDQWVLTAAHCFRDG----NDHSLWR  276 (509)
T ss_dssp             CSCCSSCC---------CCCTTSCHHHHCTTEEEEEC----------CEEEEECSSSEEEECGGGC------------CE
T ss_pred             CCcccCCc---------CCCCCccccCCCCcEEEEEeCC------CcEEEEEEEcCCEEEEcHHHcCCC----CCcceEE
Confidence            44679944         2578999999999999997532      688999999999999999999652    1235678


Q ss_pred             EEeccccCCccCCceEEEeeeEEEeCCCCCC-----------CCCceeEEEeCCCCCCCCCceeeeeecCCCC----CCC
Q psy16044         90 AVLGDWDRTEEEKSEVRIPVERIRVHEEFHN-----------YHHDIALLKLSRPTSARDKGVRAVCLTDADK----RPV  154 (436)
Q Consensus        90 v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~-----------~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~----~~~  154 (436)
                      |++|.++..    ..+.+.|+++++||+|+.           ..||||||||++|+. ++.+++|||||....    ...
T Consensus       277 V~~G~~~~~----~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~-~~~~v~picLp~~~~~~~~~~~  351 (509)
T 2odp_A          277 VNVGDPKSQ----WGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVK-MSTHARPICLPCTMEANLALRR  351 (509)
T ss_dssp             EEECCTTCT----TCEEECEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCC-CBTTBCCCBCTTBHHHHHHTTC
T ss_pred             EEeCCcccC----CCceeeeEEEEECCCCccccccccccccccCCCeEEEEECCccc-CCCCcccccCCCCcccchhhcc
Confidence            999987642    347789999999999973           479999999999999 788899999997421    123


Q ss_pred             CCCCcEEEEecCccCCCCCcc----ccceeeeeec---cchhhhhhhc-------CC----CcCCcCCeEEeccCCCCCC
Q psy16044        155 NPKQQCVATGWGRVKPKGDLV----SKLRQIRVPL---HNISVCRDKY-------GD----SVELHGGHLCGGQLDGFSG  216 (436)
Q Consensus       155 ~~~~~~~~~GwG~~~~~~~~~----~~l~~~~~~~---~~~~~C~~~~-------~~----~~~~~~~~~Ca~~~~~~~~  216 (436)
                      ..+..|++.|||.........    ...+...+.+   ++.+.|...+       ..    ....++.||||+. .++.+
T Consensus       352 ~~g~~~~~~g~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~-~~~~~  430 (509)
T 2odp_A          352 PQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT-QEDES  430 (509)
T ss_dssp             CTTCCHHHHHHHHSCSSEEEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECC-TTCCC
T ss_pred             CCCCccccccccccccccceeeeecccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCC-CCCCc
Confidence            457788889999765322111    1123445555   4789998853       21    1235679999986 34589


Q ss_pred             CccCCCCCeeeeEecCCcEEEEEEEeEcCC-CCCC------------C------cccccccceecCCccccCC
Q psy16044        217 ACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCGV------------G------IRYSHRQPRLINGKESIRG  270 (436)
Q Consensus       217 ~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~-~C~~------------~------~~y~~v~~~~~~~~~~~~~  270 (436)
                      +|+|||||||+|.. +++|+|+||+|||.. .|+.            +      .+|++|.+|..||.+.+..
T Consensus       431 ~C~GDSGGPL~~~~-~~~~~l~GIvS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~~  502 (509)
T 2odp_A          431 PCKGESGGAVFLER-RFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGD  502 (509)
T ss_dssp             CCGGGTTCEEEEEE-TTEEEEEEEEEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHTT
T ss_pred             ccCCCccCceEEEE-CCeEEEEEEEEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhCC
Confidence            99999999999985 789999999999984 5752            1      4789999999999887753

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=100.00  E-value=1.4e-39  Score=327.07  Aligned_cols=236  Identities=24%  Similarity=0.366  Sum_probs=179.8

Q ss_pred             ecCCCCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceE
Q psy16044         10 FARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT   89 (436)
Q Consensus        10 ~~~~CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~   89 (436)
                      ....||+...         .+..+..++|||+|+|++.....  ..++|+||||+++||||||||+....    ....+.
T Consensus       207 ~~~~CG~~~~---------~~~~~~~~~~Pw~v~l~~~~~~~--~~~~CgGsLIs~~~VLTAAHC~~~~~----~~~~~~  271 (497)
T 1rrk_A          207 SLSLCGMVWE---------HRKGTDYHKQPWQAKISVIRPSK--GHESCMGAVVSEYFVLTAAHCFTVDD----KEHSIK  271 (497)
T ss_dssp             GTTCTTCCCC---------CTTCCHHHHSTTEEEEEECC--C--CCEEEEEEECSSSEEEECGGGCCTTC----CGGGEE
T ss_pred             CcCCCCCCCC---------CCCCCCccccCcEEEEEEEcCCC--CCceeEEEEecCCEEEECHHhCCCCC----CceEEE
Confidence            3457995432         14567789999999998753222  26899999999999999999996531    245688


Q ss_pred             EEeccccCCccCCceEEEeeeEEEeCCCCCC-----------CCCceeEEEeCCCCCCCCCceeeeeecCCCC----CCC
Q psy16044         90 AVLGDWDRTEEEKSEVRIPVERIRVHEEFHN-----------YHHDIALLKLSRPTSARDKGVRAVCLTDADK----RPV  154 (436)
Q Consensus        90 v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~-----------~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~----~~~  154 (436)
                      |++|..        .+.+.|+++++||+|+.           ..||||||||++|+. ++.+++|||||....    ...
T Consensus       272 v~~G~~--------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~-~~~~v~picLp~~~~~~~~~~~  342 (497)
T 1rrk_A          272 VSVGGE--------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK-YGQTIRPICLPCTEGTTRALRL  342 (497)
T ss_dssp             EEETTC--------SSCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCC-CBTTBCCCBCTTBHHHHHHTTC
T ss_pred             EEeCCc--------cceeeeEEEEeCCCccccccccccccccCCCcEEEEEECCCCc-CCCCeeeeeCCCCCcccccccc
Confidence            999864        24578999999999973           479999999999999 788999999997421    124


Q ss_pred             CCCCcEEEEecCccCCCC-------Cccccceeeeeeccc---hhhhhhhc------CC----CcCCcCCeEEeccCCC-
Q psy16044        155 NPKQQCVATGWGRVKPKG-------DLVSKLRQIRVPLHN---ISVCRDKY------GD----SVELHGGHLCGGQLDG-  213 (436)
Q Consensus       155 ~~~~~~~~~GwG~~~~~~-------~~~~~l~~~~~~~~~---~~~C~~~~------~~----~~~~~~~~~Ca~~~~~-  213 (436)
                      ..+..|++.|||......       ..+..|++..+.+++   .+.|+..+      ..    ....++.||||+...+ 
T Consensus       343 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~  422 (497)
T 1rrk_A          343 PPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPY  422 (497)
T ss_dssp             CTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSS
T ss_pred             CCCCchhcccccccCCccccceeeccCCCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCC
Confidence            467888889998764321       134678999999998   68998742      11    1235679999987653 


Q ss_pred             -CCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC-CCC-------CCc----ccccccceecCCccccCC
Q psy16044        214 -FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCG-------VGI----RYSHRQPRLINGKESIRG  270 (436)
Q Consensus       214 -~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~-~C~-------~~~----~y~~v~~~~~~~~~~~~~  270 (436)
                       ..++|+|||||||+|.. +++|+|+||+|||.. .|+       .+.    +|++|.+|..||.+.+..
T Consensus       423 ~~~~~C~GDSGGPL~~~~-~~~~~l~GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~~  491 (497)
T 1rrk_A          423 ADPNTCRGDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQD  491 (497)
T ss_dssp             CCCCCCGGGTTCEEEEEE-TTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTT
T ss_pred             CCCcCCCCCCCCeeEEEe-CCEEEEEEEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHHHHHhCc
Confidence             46899999999999974 789999999999984 477       233    789999999999887754

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=100.00  E-value=1.3e-36  Score=319.94  Aligned_cols=227  Identities=23%  Similarity=0.363  Sum_probs=172.7

Q ss_pred             CCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEe
Q psy16044         29 NGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIP  108 (436)
Q Consensus        29 ~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~  108 (436)
                      .|..+..++|||+|+|.......  ..++|+||||+++||||||||+...    .....+.|++|...        +.+.
T Consensus       459 ~~~~~~~~~~Pw~~~v~~~~~~~--~~~~CgGsLIs~~~VLTAAHC~~~~----~~~~~~~V~~G~~~--------~~~~  524 (741)
T 3hrz_D          459 HRKGTDYHKQPWQAKISVIRPSK--GHESCMGAVVSEYFVLTAAHCFTVD----DKEHSIKVSVGGEK--------RDLE  524 (741)
T ss_dssp             C---CCTTTCTTEEEEEECCCC-------EEEEECSSSEEEECGGGCC---------CCEEEEETTCS--------CCEE
T ss_pred             cCCcccccCcCCeEEEEEEeCCC--CCCEEEEEEecCCEEEEchhhcccc----CCcceEEEEeCCCc--------eEEE
Confidence            48899999999999987752221  2689999999999999999998653    13456889999543        4578


Q ss_pred             eeEEEeCCCCCC-----------CCCceeEEEeCCCCCCCCCceeeeeecCCC----CCCCCCCCcEEEEecCccCCCC-
Q psy16044        109 VERIRVHEEFHN-----------YHHDIALLKLSRPTSARDKGVRAVCLTDAD----KRPVNPKQQCVATGWGRVKPKG-  172 (436)
Q Consensus       109 v~~i~~hp~y~~-----------~~~DiAll~L~~~~~~~~~~v~pi~l~~~~----~~~~~~~~~~~~~GwG~~~~~~-  172 (436)
                      |+++++||+|+.           ..||||||||++|+. ++.+++|||||...    ......+..|.+.|||.+.... 
T Consensus       525 v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~-~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~  603 (741)
T 3hrz_D          525 IEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK-YGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDI  603 (741)
T ss_dssp             EEEEEECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCC-CCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEE
T ss_pred             EEEEEECCCCCcccccccccCCccCCcEEEEEECCcCc-CCCCccccccCCcccccchhccCCCCccccccccccccccc
Confidence            999999999973           478999999999999 78889999999642    1234567889999999876443 


Q ss_pred             ------Cccccceeeeeeccc---hhhhhhhcC------C----CcCCcCCeEEeccCCC--CCCCccCCCCCeeeeEec
Q psy16044        173 ------DLVSKLRQIRVPLHN---ISVCRDKYG------D----SVELHGGHLCGGQLDG--FSGACIGDSGGPLQCSLK  231 (436)
Q Consensus       173 ------~~~~~l~~~~~~~~~---~~~C~~~~~------~----~~~~~~~~~Ca~~~~~--~~~~C~gDsGgPl~~~~~  231 (436)
                            .....|+...+.+++   ...|...+.      .    ....++.||||+...+  ..++|+|||||||++.. 
T Consensus       604 ~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~~-  682 (741)
T 3hrz_D          604 KALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-  682 (741)
T ss_dssp             EEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEE-
T ss_pred             cceeccccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcCcCcccCceEEee-
Confidence                  125668899999988   789988432      1    1246789999987653  47899999999999985 


Q ss_pred             CCcEEEEEEEeEcC-CCCCC------C-----cccccccceecCCccccCCC
Q psy16044        232 DGRWYLAGITSFGS-GYCGV------G-----IRYSHRQPRLINGKESIRGA  271 (436)
Q Consensus       232 ~~~~~l~GI~S~g~-~~C~~------~-----~~y~~v~~~~~~~~~~~~~~  271 (436)
                      +++|+|+||+|||. ..|+.      +     .+|++|..+..||.+.+...
T Consensus       683 ~~~~~lvGIvS~G~~~~C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~~~  734 (741)
T 3hrz_D          683 RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  734 (741)
T ss_dssp             TTEEEEEEEEEEESSCCCC------CCCTTCEEEEEEGGGSHHHHHHHTTTS
T ss_pred             CCeEEEEEEEeecCCcccCCcccccCCCCCccceEEEhHHhHHHHHHHhcCC
Confidence            78999999999997 34765      3     68999999999999888764

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=100.00  E-value=5e-36  Score=267.38  Aligned_cols=202  Identities=13%  Similarity=0.082  Sum_probs=154.9

Q ss_pred             CCCeEeCCcccCCCCCcc--eEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc
Q psy16044         23 RQPRLINGKESIRGAWPW--QVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE  100 (436)
Q Consensus        23 ~~~~i~~G~~a~~~~~Pw--~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~  100 (436)
                      ...||++|.+     +||  ++.+.  .   +  .++|+||||+++||||||||+.+.... .....+.|++|..+....
T Consensus         7 ~~~rI~~g~~-----~P~~~~~~~~--~---~--~~~CgGtLIs~~~VLTAAHCv~~~~~~-~~~~~~~v~~G~~~~~~~   73 (215)
T 1p3c_A            7 GRTKVANTRV-----APYNSIAYIT--F---G--GSSCTGTLIAPNKILTNGHCVYNTASR-SYSAKGSVYPGMNDSTAV   73 (215)
T ss_dssp             CCEECSCTTS-----TTGGGEEEEE--C---S--SCEEEEEEEETTEEEECHHHHEETTTT-EECCCCEEEETCBTTBCT
T ss_pred             CCEEecCCCc-----CCCeEEEEEE--c---C--CceEEEEEEeCCEEEECccEeccCCCC-ccccceEEEEcccCCCCC
Confidence            4568888875     688  34443  1   1  689999999999999999999653110 111234899998876543


Q ss_pred             CCceEEEeeeEEEeCCCCC---CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCcccc
Q psy16044        101 EKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK  177 (436)
Q Consensus       101 ~~~~~~~~v~~i~~hp~y~---~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~  177 (436)
                      .   +.+.|+++++||+|+   ...+|||||||++|+   +..++|+|||...   ...+..++++|||.+.. ...+..
T Consensus        74 ~---~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~~---~~~v~pi~l~~~~---~~~g~~~~~~Gwg~~~~-~~~~~~  143 (215)
T 1p3c_A           74 N---GSANMTEFYVPSGYINTGASQYDFAVIKTDTNI---GNTVGYRSIRQVT---NLTGTTIKISGYPGDKM-RSTGKV  143 (215)
T ss_dssp             T---CCEEEEEEECCHHHHHHCCGGGCCEEEEESSCH---HHHHCCCCBCCCS---CCTTCEEEEEECCHHHH-HHHSSC
T ss_pred             C---CeEEEEEEEeCCccccCCCcccCEEEEEECCCC---cccceeeecCCCc---ccCCCeEEEecCCCCCc-ccccce
Confidence            2   357899999999993   568999999999974   4679999999853   25789999999997653 233466


Q ss_pred             ceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccc
Q psy16044        178 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR  257 (436)
Q Consensus       178 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v  257 (436)
                      |++..+.+++.+.|...+.                 ..++|.|||||||++.  ++  +|+||+|||.+|+..+.+|++|
T Consensus       144 l~~~~~~~~~~~~c~~~~~-----------------~~~~C~GDSGgPl~~~--~g--~lvGi~S~g~~c~~~p~v~t~v  202 (215)
T 1p3c_A          144 SQWEMSGSVTREDTNLAYY-----------------TIDTFSGNSGSAMLDQ--NQ--QIVGVHNAGYSNGTINGGPKAT  202 (215)
T ss_dssp             CCEEEEEECCEECSSEEEE-----------------CCCCCTTCTTCEEECT--TS--CEEEECCEEEGGGTEEEEEBCC
T ss_pred             echhccCccCcccchheee-----------------ccccCCCCCCCeeEcc--CC--eEEEEEecccCCCccCceeEec
Confidence            8899999999999976541                 2689999999999984  33  7999999998854556799999


Q ss_pred             cceecCCcccc
Q psy16044        258 QPRLINGKESI  268 (436)
Q Consensus       258 ~~~~~~~~~~~  268 (436)
                      .++..||.+..
T Consensus       203 ~~~~~WI~~~~  213 (215)
T 1p3c_A          203 AAFVEFINYAK  213 (215)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHh
Confidence            99999998754

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.98  E-value=1.9e-32  Score=229.87  Aligned_cols=144  Identities=34%  Similarity=0.702  Sum_probs=125.7

Q ss_pred             cccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC---CccccceEEEEEeeCcccccccc
Q psy16044        278 ITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG---DLVSKLRQIRVPLHNISVCRDKY  354 (436)
Q Consensus       278 ~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~---~~~~~l~~~~~~~~~~~~C~~~~  354 (436)
                      .+..||||||||++|+.++.. |+|||||....   ..++.|+++|||.+....   ..+..|+++.+++++.++|++.+
T Consensus         4 ~~~~nDIALl~L~~~v~~~~~-v~picLp~~~~---~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~   79 (152)
T 2pka_B            4 KDYSHDLMLLRLQSPAKITDA-VKVLELPTQEP---ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAH   79 (152)
T ss_dssp             SBCTTCCEEEEESSCCCCCSS-CCCCCCCSSCC---CTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHC
T ss_pred             CCCCCCEEEEEECCCCcCCCC-EEeEECCCCCC---CCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhh
Confidence            456799999999999999988 99999997654   468999999999887654   45788999999999999999987


Q ss_pred             CCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccHHHHHHHHhhh
Q psy16044        355 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       355 ~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      ..  .++++|||++...+..+.|.|||||||++.   +  +|+||+||| ..|+..+.|++||||+.|++||+++|+.+
T Consensus        80 ~~--~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~---g--~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~~  151 (152)
T 2pka_B           80 PD--KVTESMLCAGYLPGGKDTCMGDSGGPLICN---G--MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITEN  151 (152)
T ss_dssp             SS--BCCTTEEEEECTTSSCBCCTTCTTCEEEET---T--EEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHHHHC
T ss_pred             cC--CCCCCEEeeccCCCCCcccCCccccceEEC---C--EEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHhccC
Confidence            64  468999999876556789999999999995   3  499999999 78987778999999999999999999753

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=99.98  E-value=5.4e-32  Score=244.16  Aligned_cols=158  Identities=34%  Similarity=0.585  Sum_probs=138.3

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....+|||||||++|+.++.. ++|||||.... ....++.|.++|||.+......+..|+++.+++++.++|
T Consensus        74 ~hp~y~~~~~~~DIALl~L~~~~~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  151 (232)
T 2oq5_A           74 VHEKYKHPSHDYDISLAELSSPVPYTNA-VHRVCLPDASY-EFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTC  151 (232)
T ss_dssp             ECTTCCTTCCTTCCEEEEESSCCCCCSS-SCCCBCCCTTC-CCCTTCEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHH
T ss_pred             eCCCCCCCCCCCCEEEEEecCCCccCCc-eeEeECCCccc-cCCCCCEEEEEECCccCCCCCCCceeeEeEEEEeCHHHc
Confidence            5899998889999999999999999988 99999997654 345789999999998876655678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+.....+.++|||++...+..+.|.|||||||++...+++|+|+||+|||.+|+..+.|++||||+.|++||+++++
T Consensus       152 ~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  231 (232)
T 2oq5_A          152 NEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTG  231 (232)
T ss_dssp             TSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSBTTBCEEEEETGGGHHHHHHHHC
T ss_pred             CCccccCCccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            88643333578899999876666789999999999998667899999999999999877789999999999999999875

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.98  E-value=6.9e-32  Score=220.54  Aligned_cols=128  Identities=38%  Similarity=0.723  Sum_probs=109.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...     ..++|+||||+++||||||||+..        ..+.|++|..+........+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~-----~~~~CgGsLIs~~~VLTAAHC~~~--------~~~~v~~G~~~~~~~~~~~~~   67 (131)
T 1yph_C            1 IVNGEEAVPGSWPWQVSLQDKT-----GFHFCGGSLINENWVVTAAHCGVT--------TSDVVVAGEFDQGSSSEKIQK   67 (131)
T ss_dssp             CBTCEECCTTSSTTEEEEECTT-----SCEEEEEEEEETTEEEECGGGCCC--------TTSEEEESCSBTTCSSSCCEE
T ss_pred             CCCCEECCCCCcCcEEEEEeCC-----CCEEEEEEEeeCCEEEECHHHCCC--------CCeEEEEeEccCCCCCCceEE
Confidence            6899999999999999998632     168999999999999999999854        346899999887655556688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccC
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK  169 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~  169 (436)
                      +.|+++++||+|+  ...||||||||++|+. ++.+++|||||.... ....+..|+++|||.+.
T Consensus        68 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~-~~~~v~picLp~~~~-~~~~g~~~~v~GWG~t~  130 (131)
T 1yph_C           68 LKIAKVFKNSKYNSLTINNDITLLKLSTAAS-FSQTVSAVCLPSASD-DFAAGTTCVTTGWGLTR  130 (131)
T ss_dssp             EEEEEEEECTTCCTTTCCSCCEEEEESSCCC-CBTTBCCCBCCCTTC-CCCTTCEEEEEESCCSC
T ss_pred             EEEEEEEeCCCCCCCCCCCCEEEEEECCccc-CCCcCcceECCCccc-CCCCCCEEEEEcCCccC
Confidence            8999999999998  4689999999999999 778899999998643 34578999999999764

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=99.98  E-value=6.7e-32  Score=251.24  Aligned_cols=161  Identities=29%  Similarity=0.551  Sum_probs=138.1

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCC-ccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|+.....||||||||++|+.++.. |+|||||.........+..|+++|||.+..... .+..|+++.+++++.++
T Consensus        89 ~Hp~y~~~~~~nDIALl~L~~~v~~~~~-v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~  167 (290)
T 1fiw_A           89 IHEKYSASSEANDIALMKITPPVTCGHF-IGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGL  167 (290)
T ss_dssp             ECTTCBTTTTBTCCEEEEEESCCCCBTT-BCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEEEEEEEECHHH
T ss_pred             ECCCCCCCCCCCCEEEEEECCccccCCc-cccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeEEEEEEecHHH
Confidence            5999999899999999999999999988 999999976553445689999999998765443 45689999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEec-CCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~-~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      |+........+.+.|||++...+..+.|.|||||||+|... +++|+|+||+|||.+|+..+.|++||||++|++||+++
T Consensus       168 C~~~~~~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~  247 (290)
T 1fiw_A          168 CNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASK  247 (290)
T ss_dssp             HTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSSSSBTTBCEEEEESGGGHHHHHHH
T ss_pred             hccccccCCcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHH
Confidence            98753222247899999987666679999999999999863 68999999999999998777899999999999999999


Q ss_pred             Hhhh
Q psy16044        429 INIA  432 (436)
Q Consensus       429 i~~~  432 (436)
                      |+..
T Consensus       248 ~~~~  251 (290)
T 1fiw_A          248 IGST  251 (290)
T ss_dssp             HCHH
T ss_pred             hCcc
Confidence            9754

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=99.98  E-value=8.5e-32  Score=244.44  Aligned_cols=156  Identities=32%  Similarity=0.589  Sum_probs=140.5

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....+|||||||++|+.++.. ++|||||.... ..+.+..|+++|||.+......+..|+++.+++++.++|
T Consensus        85 ~hp~y~~~~~~~DIALl~L~~~~~~~~~-v~piclp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C  162 (241)
T 3ncl_A           85 SHPFFNDFTFDYDIALLELEKPAEYSSM-VRPISLPDASH-VFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTC  162 (241)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCCSS-CCCCBCCCTTC-CCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCHHHH
T ss_pred             ECCCCCCCCCCCcEEEEEECCCCcccCc-cCceEcCCccc-CCCCCCEEEEEEecccCCCCCcCceeeEEeEEEECHHHh
Confidence            4899998888999999999999999988 99999998765 455789999999999876666678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+..  .+++.|||++...+..+.|.|||||||++...+++|+|+||+|||.+|+..+.|++||||++|++||+++++
T Consensus       163 ~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI~~~~~  240 (241)
T 3ncl_A          163 ENLLPQ--QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             HHHSTT--TCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             hhhccc--CCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            998865  578999999876666799999999999998778899999999999999887889999999999999999875

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=99.97  E-value=1e-31  Score=243.01  Aligned_cols=156  Identities=30%  Similarity=0.626  Sum_probs=139.3

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||+|++|+.++.. ++|||||.... ....+..|.++|||.+......+..|+++.+++++.++|
T Consensus        80 ~hp~y~~~~~~~DiALl~L~~~~~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  157 (235)
T 4dgj_A           80 INPHYNRRRKDNDIAMMHLEFKVNYTDY-IQPISLPEENQ-VFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERC  157 (235)
T ss_dssp             ECTTCBTTTTBTCCEEEEESSCCCCBTT-BCCCBCCCTTC-CCCTTCEEEEEESSBSSTTCCBCSBCEEEEEEEECHHHH
T ss_pred             ECCCCCCCCCCCeEEEEEECCccccCCc-ccccCCCCccc-CCCCCCEEEEEecccCCCCCccchhheEeEeeecCHHHh
Confidence            4899999899999999999999999988 99999998765 456789999999998876666678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+... .++++|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|++||+++|+
T Consensus       158 ~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          158 QQQMPEY-NITENMICAGYEEGGIDSCQGDSGGPLMCQE-NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             HHHCTTS-CCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             hhhccCc-cCCCCeEeecCCCCCCccCCCCCCCeEEEEE-CCcEEEEEEEEEcCCCCCCCCCEEEeeHHHHHHHHHHHhC
Confidence            9987543 4789999998766667999999999999985 7899999999999999987889999999999999998764

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=99.97  E-value=8.1e-32  Score=243.92  Aligned_cols=157  Identities=32%  Similarity=0.610  Sum_probs=138.5

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....+|||||||++|+.++.. ++|||||.... ....+..|+++|||.+......+..|+++.+++++.++|
T Consensus        81 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  158 (238)
T 3bg8_A           81 IHDQYKMAESGYDIALLKLETTVNYTDS-QRPISLPSKGE-RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC  158 (238)
T ss_dssp             ECTTCCCGGGSCCCEEEEESSCCCCBTT-BCCCBCCCGGG-GSSCCCCEEEEESCCSSSSCCCCSBCEEEECCEECHHHH
T ss_pred             ECCCCCCCCCCCcEEEEEECCccccCCC-cccCCCCCCcc-CcCCCCeEEEEecCCCCCCCChhhhhcEeeEEEECHHHh
Confidence            5899998889999999999999999988 99999997654 345788999999998876655678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+... .+++.|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||++|++||+++|+
T Consensus       159 ~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  236 (238)
T 3bg8_A          159 QKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  236 (238)
T ss_dssp             HHHCTTS-CCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred             hhhhcCC-CCCCCeEeecCCCCCCCcCCCCCCcceEEEE-CCeEEEEEEEEECCCCCCCCCCcEEEeHHHHHHHHHHHHh
Confidence            9887543 3689999998766667899999999999985 7899999999999999887889999999999999999986


Q ss_pred             h
Q psy16044        431 I  431 (436)
Q Consensus       431 ~  431 (436)
                      .
T Consensus       237 ~  237 (238)
T 3bg8_A          237 A  237 (238)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=99.97  E-value=2.4e-31  Score=241.38  Aligned_cols=158  Identities=33%  Similarity=0.653  Sum_probs=139.6

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....+|||||+|++|+.++.. ++|||||.... ....+..|+++|||.+......+..|+++.+++++.++|
T Consensus        81 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  158 (241)
T 2any_A           81 IHQNYKVSEGNHDIALIKLQAPLEYTEF-QKPISLPSKGD-TSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEEC  158 (241)
T ss_dssp             ECTTCCTTSSSSCCEEEEESSCCCCBTT-BCCCCCCCSSC-CSTTCSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHH
T ss_pred             ECCCCCCCCCCCCeEEEEeCCcccCCCC-cceeEcCCccc-CCCCCCeEEEEecccCCCCCCcCchhheeEeEEeCHHHh
Confidence            5899998888999999999999999988 99999997765 456789999999998876655678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+... .+++.|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||++|++||+++|+
T Consensus       159 ~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~  236 (241)
T 2any_A          159 QKRYQDY-KITQRMVCAGYKEGGKDACKGDSGGPLVCKH-NGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQ  236 (241)
T ss_dssp             HTTSCTT-CSCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred             hhHhccC-CCCcCcEeecCCCCCCccCCCCCCCcEEEEE-CCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHhh
Confidence            9887543 3689999998766667899999999999985 7899999999999999877789999999999999999997


Q ss_pred             hh
Q psy16044        431 IA  432 (436)
Q Consensus       431 ~~  432 (436)
                      ..
T Consensus       237 ~~  238 (241)
T 2any_A          237 SS  238 (241)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=99.97  E-value=1.3e-31  Score=242.35  Aligned_cols=153  Identities=35%  Similarity=0.657  Sum_probs=135.8

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||||++|+.++.. |+|||||....   ..+..|+++|||.+......+..|+++.+++++.++|
T Consensus        84 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~---~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  159 (237)
T 2f91_A           84 LHENFDYNLLDNDISLLKLSGSLTFNDN-VAPIALPEQGH---TATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDC  159 (237)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCBTT-BCCCBCCCTTC---CCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHH
T ss_pred             ECCCCCCCCCCCcEEEEEECCCcccCCc-eeeccCCCCCC---CCCCcEEEEECCcCCCCCCccceeeEEEEeEcCHHHh
Confidence            5899998889999999999999999988 99999997654   5788999999998876666678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      +..+.. ..+.+.|||++...+..+.|.|||||||++. .+++|+|+||+|||.+|+..+.|++||||++|++||+++|
T Consensus       160 ~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          160 RADYGA-DEILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             HHHHCT-TTSCTTEEEECCTTCCCBCCTTCTTCEEEEC-TTSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             hhhhCC-CCcCCCeEEEecCCCCCCCCCCcCCCCeEEe-cCCCEEEEEEEEecCCCCCCCCCcEEEEHHHhHHHHHHhc
Confidence            988752 2468899999876666799999999999997 4789999999999999988788999999999999999876

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=99.97  E-value=3.1e-31  Score=245.82  Aligned_cols=156  Identities=29%  Similarity=0.639  Sum_probs=135.2

Q ss_pred             CCCccccccc--ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITS--FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~--~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+....  .||||||||++|+.++.. |+|||||.... ....++.|+++|||.+..+ ..+..|+++.+++++.+
T Consensus       119 ~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~-v~picLp~~~~-~~~~g~~~~v~GWG~t~~~-~~~~~l~~~~~~i~~~~  195 (278)
T 2olg_A          119 QHPDYVDGSKDRYHDIALIRLNRQVEFTNY-IRPVCLPQPNE-EVQVGQRLTVVGWGRTETG-QYSTIKQKLAVPVVHAE  195 (278)
T ss_dssp             ECTTCCTTCSSCTTCCEEEEESSCCCCCSS-CCCCBCCCTTC-CCCTTCEEEEEESCCSSSC-CCCSBCEEEEEEBCCGG
T ss_pred             ECCCCcCCCCCCCCeEEEEEECCCCcCCCC-cCccCcCCCCC-CcCCCCEEEEEcCCcCCCC-CccchhhcccccccCHH
Confidence            4899987654  799999999999999988 99999998765 4567899999999988643 35778999999999999


Q ss_pred             ccccccCCC-ccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHH
Q psy16044        349 VCRDKYGDS-VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       349 ~C~~~~~~~-~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~  427 (436)
                      +|++.+... ..++++|||++... +.+.|+|||||||++...+++|+|+||+|||.+|+..+.|++||||+.|++||++
T Consensus       196 ~C~~~~~~~~~~~~~~~~Ca~~~~-~~~~C~GDSGGPL~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~  274 (278)
T 2olg_A          196 QCAKTFGAAGVRVRSSQLCAGGEK-AKDSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEG  274 (278)
T ss_dssp             GGGGGGSSTTCCCCTTEEEECCTT-CTTCCCCCTTCEEEEEEGGGEEEEEEEEEECCBCSTTCBCEEEEEGGGGHHHHHT
T ss_pred             HHHHHhccccccCCCceEeeecCC-CCeeCCCccCcceEEEcCCCcEEEEEEEEECCCCCCCCCCcEEeEHHHHHHHHHH
Confidence            999887542 24789999998654 4689999999999998657899999999999999887789999999999999999


Q ss_pred             HHh
Q psy16044        428 QIN  430 (436)
Q Consensus       428 ~i~  430 (436)
                      +|+
T Consensus       275 ~i~  277 (278)
T 2olg_A          275 NIR  277 (278)
T ss_dssp             TCC
T ss_pred             hhC
Confidence            875

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=99.97  E-value=3.1e-31  Score=240.25  Aligned_cols=157  Identities=27%  Similarity=0.520  Sum_probs=136.8

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCc-cccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL-VSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~-~~~l~~~~~~~~~~~~  349 (436)
                      .||.|+.....+|||||||++|+.++.. ++|||||.....  ..+..|.++|||.+...... +..|+++.+++++.++
T Consensus        79 ~hp~y~~~~~~~DIALl~L~~~~~~~~~-v~picLp~~~~~--~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~  155 (238)
T 1ym0_A           79 VNENYDPATLENDVSVIKTAVAITFDIN-VGPICAPDPAND--YVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAF  155 (238)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCSSS-CCCCBCCCTTCC--CTTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHH
T ss_pred             ECCCCCCCCCcccEEEEEeCCCccccCc-ccccCCCCCcCC--CCCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHH
Confidence            4899998889999999999999999987 999999976652  27889999999988765443 7789999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCC--CCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGF--SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~--~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~  427 (436)
                      |+..+... .+.+.|||++...+.  .+.|.|||||||++...+++|+|+||+|||.+|+ .+.|++||||+.|++||++
T Consensus       156 C~~~~~~~-~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~-~~~p~vyt~v~~~~~WI~~  233 (238)
T 1ym0_A          156 CDAVYTSD-TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWITD  233 (238)
T ss_dssp             HHHHCTTS-CCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSSSS-SSSCEEEEEHHHHHHHHHH
T ss_pred             HhHhhccc-ccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCCCC-CCCCcEEEEHHHhHHHHHH
Confidence            99887543 468999999876544  6899999999999986578999999999999998 5779999999999999999


Q ss_pred             HHhhh
Q psy16044        428 QINIA  432 (436)
Q Consensus       428 ~i~~~  432 (436)
                      +|+++
T Consensus       234 ~i~~n  238 (238)
T 1ym0_A          234 TITNN  238 (238)
T ss_dssp             HHHCC
T ss_pred             HhcCC
Confidence            99753

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=99.97  E-value=6.7e-31  Score=252.75  Aligned_cols=162  Identities=33%  Similarity=0.575  Sum_probs=138.6

Q ss_pred             CCCcc------cccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        271 AWPWQ------NLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       271 ~~p~~------~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                      .||.|      +.....||||||||++|+.++.. |+|||||.... ....++.|+++|||.+......+..|+++.+++
T Consensus       194 ~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~-v~PicLp~~~~-~~~~g~~~~v~GWG~t~~~~~~~~~L~~~~v~i  271 (372)
T 1z8g_A          194 YHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEY-IQPVCLPAAGQ-ALVDGKICTVTGWGNTQYYGQQAGVLQEARVPI  271 (372)
T ss_dssp             EETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSS-CCCCBCCCTTC-CCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEE
T ss_pred             ECCCccccccCCCCCCCccEEEEEECCCCCCCCc-eeccccCCccc-CCCCCCEEEEEecCCCCCCCCCCceeeEEEEEe
Confidence            48888      56678899999999999999988 99999997654 446789999999999876656678999999999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEec---CCcEEEEEEEEecCCCCCCCCCeEEEeCccc
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK---DGRWYLAGITSFGSGCAKSGYPDVYTKLSFY  421 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~---~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~  421 (436)
                      ++.++|+........++++|||++...+..+.|+|||||||++...   +++|+|+||+|||.+|+..+.|++||||+.|
T Consensus       272 i~~~~C~~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~p~vyt~V~~y  351 (372)
T 1z8g_A          272 ISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDF  351 (372)
T ss_dssp             ECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGG
T ss_pred             cChHHhCcchhcCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHH
Confidence            9999998742212247899999987666679999999999999863   3899999999999999887889999999999


Q ss_pred             HHHHHHHHhhhhh
Q psy16044        422 LPWIRKQINIAVD  434 (436)
Q Consensus       422 ~~WI~~~i~~~~~  434 (436)
                      ++||+++|+...+
T Consensus       352 ~~WI~~~i~~~~~  364 (372)
T 1z8g_A          352 REWIFQAIKTHSE  364 (372)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHhccCC
Confidence            9999999986543

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=99.97  E-value=1.2e-30  Score=238.55  Aligned_cols=157  Identities=34%  Similarity=0.537  Sum_probs=134.7

Q ss_pred             CCCcccccccccccceeecccc----cccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEee
Q psy16044        271 AWPWQNLITSFLSAALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLH  345 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~----~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~  345 (436)
                      .||.|+.....||||||+|++|    +.++.. |+|||||.... ....+..|.++|||.+.... ..+..|+++.++++
T Consensus        84 ~Hp~y~~~~~~~DIALl~L~~~~~~~~~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~  161 (252)
T 1rtf_B           84 VHKEFDDDTYDNDIALLQLKSDSSRCAQESSV-VRTVCLPPADL-QLPDWTECELSGYGKHEALSPFYSERLKEAHVRLY  161 (252)
T ss_dssp             ECTTCCTTTCTTCCEEEEECCSSSCCSCCBTT-BCCCBCCCTTC-CCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEEC
T ss_pred             eCCCCCcCCCCCCEEEEEECCccccccccCCc-eeceeCCCccc-cCCCCCEEEEEEcCCCCCCCccccchheEeeeEEe
Confidence            5899998889999999999999    888887 99999997654 45578899999999876543 24678999999999


Q ss_pred             CccccccccCCCccCCCCceecccCCCC------CCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCc
Q psy16044        346 NISVCRDKYGDSVELHGGHLCGGQLDGF------SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLS  419 (436)
Q Consensus       346 ~~~~C~~~~~~~~~~~~~~~C~~~~~~~------~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~  419 (436)
                      +.++|+..+.....+.++|||++...+.      .+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+
T Consensus       162 ~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~  240 (252)
T 1rtf_B          162 PSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLN-DGRMTLVGIISWGLGCGQKDVPGVYTKVT  240 (252)
T ss_dssp             CGGGSSTTTTTTCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGG
T ss_pred             cHHHhhhhhccCCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEe-CCcEEEEEEEEEcCCCCCCCCCeEEEEHH
Confidence            9999998764333578999999865543      6899999999999985 78999999999999998777899999999


Q ss_pred             ccHHHHHHHHh
Q psy16044        420 FYLPWIRKQIN  430 (436)
Q Consensus       420 ~~~~WI~~~i~  430 (436)
                      .|++||+++|+
T Consensus       241 ~y~~WI~~~~~  251 (252)
T 1rtf_B          241 NYLDWIRDNMR  251 (252)
T ss_dssp             GGHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999885

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=99.97  E-value=3.6e-31  Score=240.78  Aligned_cols=157  Identities=34%  Similarity=0.722  Sum_probs=134.1

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCc--cccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL--VSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~--~~~l~~~~~~~~~~~  348 (436)
                      .||.|+.....||||||||++|+.++.. ++|||||.... ....+..|+++|||.+......  +..|+++.+++++.+
T Consensus        79 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~~~~~~~~  156 (245)
T 2f9n_A           79 VHPQFYIIQTGADIALLELEEPVNISSR-VHTVMLPPASE-TFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENH  156 (245)
T ss_dssp             ECTTCCSSCCTTCCEEEEESSCCCCCSS-SCCCBCCCTTC-CCCTTCCEEEEESCCSBTTBCCCTTCBCEEEECCEECHH
T ss_pred             ECCCccCCCCCCcEEEEEeCCCCcCCCC-ccccCCCCccc-CCCCCCEEEEEEeCCCCCCCCCCccccceEEEEEEcCHH
Confidence            5999998889999999999999999988 99999997654 4567899999999987654332  347999999999999


Q ss_pred             ccccccCCC-------ccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCccc
Q psy16044        349 VCRDKYGDS-------VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFY  421 (436)
Q Consensus       349 ~C~~~~~~~-------~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~  421 (436)
                      +|+..+...       ..++++|||++.  ...+.|.|||||||+|.. +++|+|+||+|||.+|+..+.|++||||+.|
T Consensus       157 ~C~~~~~~~~~~~~~~~~~~~~~~Ca~~--~~~~~C~GDSGgPL~~~~-~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y  233 (245)
T 2f9n_A          157 ICDAKYHLGAYTGDDVRIIRDDMLCAGN--SQRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYY  233 (245)
T ss_dssp             HHHHHHHTTCCSCTTSCCSCTTEEEECC--SSSBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEEEEEGGGG
T ss_pred             HhhhhhcccccccccccccccccEeecC--CCCCcCCCCCCCceEEEE-CCEEEEEEEEEeCCCCCCCCCCeEEEEHHHH
Confidence            998876321       246889999974  346899999999999985 7899999999999999877789999999999


Q ss_pred             HHHHHHHHhhh
Q psy16044        422 LPWIRKQINIA  432 (436)
Q Consensus       422 ~~WI~~~i~~~  432 (436)
                      ++||+++|+++
T Consensus       234 ~~WI~~~~~~~  244 (245)
T 2f9n_A          234 LDWIHHYVPKK  244 (245)
T ss_dssp             HHHHHHHSCC-
T ss_pred             HHHHHHHhhcC
Confidence            99999998754

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=99.97  E-value=7.2e-31  Score=239.56  Aligned_cols=156  Identities=32%  Similarity=0.649  Sum_probs=135.4

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||+|++|+.++.. |+|||||.... ..+.+..|+++|||.+..+...+..|+++.+++++.++|
T Consensus        93 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  170 (251)
T 1pyt_D           93 VHEKWNSFLVRNDIALIKLAETVELGDT-IQVACLPSEGS-LLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATC  170 (251)
T ss_dssp             ECTTCBTTTTBSCCEEEEESSCCCCCSS-CCCCBCCCTTC-CCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHHHH
T ss_pred             ECCCCCCCCCCCCEEEEEECCCcccCCC-eeeeEcCCCcc-cCCCCCEEEEEecccCCCCCCcccchheeEeEeeCHHHc
Confidence            5999998889999999999999999988 99999998765 345688999999999876655677899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      +..+.....+++.|||++. .+..+.|.|||||||++.. +++|+|+||+|||.  .|+..+.|++||||+.|++||+++
T Consensus       171 ~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-~~~~~l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~  248 (251)
T 1pyt_D          171 SQRDWWGTTVKETMVCAGG-DGVISACNGDSGGPLNCQA-DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQK  248 (251)
T ss_dssp             TSTTTTTTTCCTTEEEECC-SCSSCCCCSCTTCEEEEES-SSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHH
T ss_pred             chhhccCCCcCCCeEEecC-CCCCccCCCCCCCceEEEE-CCCEEEEEEEEECCCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence            8865322357899999986 4446899999999999985 78999999999996  688767899999999999999998


Q ss_pred             Hh
Q psy16044        429 IN  430 (436)
Q Consensus       429 i~  430 (436)
                      |+
T Consensus       249 ~~  250 (251)
T 1pyt_D          249 LQ  250 (251)
T ss_dssp             TT
T ss_pred             hc
Confidence            85

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=99.97  E-value=4.2e-31  Score=239.71  Aligned_cols=158  Identities=27%  Similarity=0.545  Sum_probs=136.6

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCC--CCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKR--PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~--~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+.....||||||+|++|+.++.. |+|||||.....  ....+..|.++|||.+......+..|+++.+++++.+
T Consensus        76 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~  154 (241)
T 2jkh_A           76 KHNRFTKETYDFDIAVLRLKTPITFRMN-VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRN  154 (241)
T ss_dssp             ECTTCBTTTTBTCCEEEEESSCCCCBTT-BCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEEECHH
T ss_pred             eCCCCCCCCCCCcEEEEEECCcccCCCC-EeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEeeeccccHH
Confidence            4999998889999999999999999988 999999975421  1346789999999988765556788999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      +|+..+..  .++++|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|++||+++
T Consensus       155 ~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~  231 (241)
T 2jkh_A          155 SCKLSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRF-KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS  231 (241)
T ss_dssp             HHHHHCSS--CCCTTEEEESCSSSSCBCCTTTTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred             HhcccccC--cCCCCeEEeeCCCCCCccCcCcCCCeeEEEE-CCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHH
Confidence            99987654  4789999998765557899999999999985 78999999999999998777899999999999999999


Q ss_pred             Hhhh
Q psy16044        429 INIA  432 (436)
Q Consensus       429 i~~~  432 (436)
                      |+..
T Consensus       232 ~~~~  235 (241)
T 2jkh_A          232 MKTR  235 (241)
T ss_dssp             TC--
T ss_pred             hccc
Confidence            9754

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=99.97  E-value=1.2e-30  Score=236.62  Aligned_cols=157  Identities=31%  Similarity=0.618  Sum_probs=134.9

Q ss_pred             CCCccccccc--ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITS--FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~--~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+....  .+|||||+|++|+.++.. ++|||||.... ....+..|+++|||.+......+..|+++.+++++.+
T Consensus        79 ~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~-v~pi~lp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~  156 (240)
T 1gvk_B           79 VHPYWNTDDVAAGYDIALLRLAQSVTLNSY-VQLGVLPRAGT-ILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYA  156 (240)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCBTT-BCCCCCCCTTC-CCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHH
T ss_pred             ECCCCCCCCCCCCCcEEEEEECCccccCCC-ccceecCCCCC-CCCCCCEEEEEecCcCCCCCCcchhccEEEEEEEcHH
Confidence            5899987766  899999999999999988 99999998765 3457889999999998766666788999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcccHHHHH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIR  426 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~~~~WI~  426 (436)
                      .|+..+.....+++.|||++. .+..+.|.|||||||++.. +++|+|+||+||+.  +|+..+.|++||||+.|++||+
T Consensus       157 ~C~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~  234 (240)
T 1gvk_B          157 ICSSSSYWGSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWIN  234 (240)
T ss_dssp             HHTSTTTTGGGCCTTEEEECC-SSSCBCCTTCTTCEEEEEE-TTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHH
T ss_pred             HhccccccCccCCcceEeecC-CCCCcccCCCCcCceEEEE-CCcEEEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHH
Confidence            998863222247899999984 4456899999999999985 78999999999995  7887778999999999999999


Q ss_pred             HHHhh
Q psy16044        427 KQINI  431 (436)
Q Consensus       427 ~~i~~  431 (436)
                      ++|+.
T Consensus       235 ~~i~~  239 (240)
T 1gvk_B          235 NVIAS  239 (240)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99975

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=99.97  E-value=9.4e-31  Score=236.98  Aligned_cols=157  Identities=27%  Similarity=0.472  Sum_probs=134.3

Q ss_pred             CCCcccccc-cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLIT-SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~-~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|+... ..||||||||++|+.++.. ++|||||.... ....++.|+++|||.+......+..|+++.+++++.++
T Consensus        73 ~Hp~y~~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~  150 (240)
T 2zgc_A           73 QHPRYKPVPALENDLALLQLDGKVKPSRT-IRPLALPSKRQ-VVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRM  150 (240)
T ss_dssp             ECTTCBCTTSCBSCCEEEEESSCCCCCSS-CCCCCCCCTTC-CCCTTCEEEEEECCBSSTTCCBCSBCEEEEEEECCHHH
T ss_pred             ECCCCCCCCCCcccEEEEEeCCcccCCCc-eeeeEcCCCCC-CCCCCCEEEEEECCcccCCCCcCceeeeeeeeecCHHH
Confidence            589998876 8899999999999999988 99999998765 45678999999999987655667889999999999999


Q ss_pred             ccc--ccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccHHHHH
Q psy16044        350 CRD--KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYLPWIR  426 (436)
Q Consensus       350 C~~--~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~~WI~  426 (436)
                      |+.  .+..  .+.++|||++...+..+.|.|||||||+|.   +.|+|+||+||| ..|+..+.|++||||+.|++||+
T Consensus       151 C~~~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~  225 (240)
T 2zgc_A          151 CNNSRFWNG--SLSPSMVCLAADSKDQAPCKGDSGGPLVCG---KGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIR  225 (240)
T ss_dssp             HTSTTTTTT--CCCTTEEEEECSSTTCBCCTTCTTCEEEET---TTTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHH
T ss_pred             hCCccccCC--CCCCceEeeccCCCCCccCCCCccCeeEEC---CCCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHH
Confidence            988  4543  468899999876656789999999999994   347899999999 67987778999999999999999


Q ss_pred             HHHhhhhh
Q psy16044        427 KQINIAVD  434 (436)
Q Consensus       427 ~~i~~~~~  434 (436)
                      ++|+...+
T Consensus       226 ~~~~~~~~  233 (240)
T 2zgc_A          226 KVTGRSAL  233 (240)
T ss_dssp             HHHCCC--
T ss_pred             HHHhhcch
Confidence            99976554

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=99.97  E-value=1.1e-30  Score=236.85  Aligned_cols=157  Identities=34%  Similarity=0.607  Sum_probs=135.4

Q ss_pred             CCCcccccccc--cccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITSF--LSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~~--~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+.....  +|||||+|++|+.++.. |+|||||.... ....+..|+++|||.+......+..|+++.+++++.+
T Consensus        79 ~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~  156 (240)
T 1fon_A           79 VHPLWNSNCVACGNDIALVKLSRSAQLGDK-VQLANLPPAGD-ILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYE  156 (240)
T ss_dssp             ECTTCCTTCGGGCCCCEEEECSSCCCCTTS-CCCCBCCCTTC-CCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHH
T ss_pred             ECCCCcCCCccCCCCEEEEEecCccccCCc-ccccCCCCccc-CCCCCCeEEEEEEeEcCCCCCCChhheEEEEeeeCHH
Confidence            59999887777  99999999999999988 99999998765 3467889999999988766566788999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcccHHHHH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIR  426 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~~~~WI~  426 (436)
                      +|++.+.....+.+.|||++. .+ .+.|.|||||||++...+++|+|+||+||+.  +|+..+.|++||||+.|++||+
T Consensus       157 ~C~~~~~~~~~~~~~~~Ca~~-~~-~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~  234 (240)
T 1fon_A          157 HCSQWDWWGITVKKTMVCAGG-DT-RSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWID  234 (240)
T ss_dssp             HHTSTTTTGGGCCTTEEEECC-SS-SCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHH
T ss_pred             HhccceecCCccccceEeecC-CC-CcccCCCCCCeEEeEcCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEhHHHHHHHH
Confidence            998864322246899999984 33 6899999999999986578999999999996  7987678999999999999999


Q ss_pred             HHHhh
Q psy16044        427 KQINI  431 (436)
Q Consensus       427 ~~i~~  431 (436)
                      ++|+.
T Consensus       235 ~~~~~  239 (240)
T 1fon_A          235 ETIAS  239 (240)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99975

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=99.97  E-value=2e-30  Score=236.89  Aligned_cols=156  Identities=26%  Similarity=0.547  Sum_probs=138.3

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....+|||||+|++|+.++.. ++|||||....   ..+..|+++|||.+... ..+..|+++.+++++.++|
T Consensus        92 ~hp~y~~~~~~~DIAll~L~~~~~~~~~-v~picLp~~~~---~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~~~~~~~C  166 (251)
T 3gov_B           92 LHPQYDPNTFENDVALVELLESPVLNAF-VMPICLPEGPQ---QEGAMVIVSGWGKQFLQ-RFPETLMEIEIPIVDHSTC  166 (251)
T ss_dssp             ECTTCBTTTTBTCCEEEEESSCCCCSSS-CCCCBCCSSCC---CTTCEEEEEECSCCTTS-CCCSBCEEEEEEEECHHHH
T ss_pred             ECCCCCCCCCCCCEEEEEeCCcccCCCc-eEEeECCCCCC---CCCCEEEEEcCCCCCCC-CCCccceEEeeEEECHHHh
Confidence            5899999899999999999999999988 99999997765   67899999999987653 3578899999999999999


Q ss_pred             ccccCCC-ccCCCCceecccCCCCCCCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        351 RDKYGDS-VELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       351 ~~~~~~~-~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      +..+... ..++++|||++...+..+.|.|||||||++.. .+++|+|+||+|||.+|+..+.|++||+|+.|++||+++
T Consensus       167 ~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~  246 (251)
T 3gov_B          167 QKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV  246 (251)
T ss_dssp             HHHTTTTTCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETTTTHHHHHHH
T ss_pred             hhhhhhccCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHHH
Confidence            9887542 34789999998877667999999999999985 578999999999999999878899999999999999999


Q ss_pred             Hhh
Q psy16044        429 INI  431 (436)
Q Consensus       429 i~~  431 (436)
                      |+.
T Consensus       247 ~~~  249 (251)
T 3gov_B          247 TGV  249 (251)
T ss_dssp             HCC
T ss_pred             hcc
Confidence            864

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=99.97  E-value=1.4e-30  Score=239.31  Aligned_cols=160  Identities=35%  Similarity=0.647  Sum_probs=139.1

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCC--ccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD--LVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~--~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+.....||||||||++|+.++.. ++|||||.... ....+..|+++|||.+.....  .+..|+++.+++++.+
T Consensus        78 ~hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~  155 (261)
T 3gyl_B           78 PHPSYLQEGSQGDIALLQLSRPITFSRY-IRPISLPAAQA-SFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRE  155 (261)
T ss_dssp             ECTTCCSTTCSCCCEEEEESSCCCCBTT-BCCCBCCCTTC-CCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHH
T ss_pred             ECCCcCCCCCCCcEEEEEECCCccCCCc-eeccCCCCccc-CCCCCCEEEEEecCCCCCCCCccCCccceEEEEEEECHH
Confidence            5899998889999999999999999988 99999997765 455789999999998765433  2678999999999999


Q ss_pred             ccccccCC------CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccH
Q psy16044        349 VCRDKYGD------SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYL  422 (436)
Q Consensus       349 ~C~~~~~~------~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~  422 (436)
                      .|+..+..      ...+.++|||++...+..+.|.|||||||+|.. +++|+|+||+|||.+|+..+.|++||+|+.|+
T Consensus       156 ~C~~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~  234 (261)
T 3gyl_B          156 TCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLWYLTGIVSWGDACGARNRPGVYTLASSYA  234 (261)
T ss_dssp             HHHHHHTTTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEE-TTEEEEEEEECCCCCSSCTTCCEEEEEGGGGH
T ss_pred             HhhhhhcccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEEe-CCEEEEEEEEecCCCCCCCCCCCEEEEHHHhH
Confidence            99987652      124789999998766667999999999999985 78999999999999998878899999999999


Q ss_pred             HHHHHHHhhhh
Q psy16044        423 PWIRKQINIAV  433 (436)
Q Consensus       423 ~WI~~~i~~~~  433 (436)
                      +||+++|++..
T Consensus       235 ~WI~~~i~~~~  245 (261)
T 3gyl_B          235 SWIQSKVTELQ  245 (261)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHhhcc
Confidence            99999997643

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=99.97  E-value=2.5e-30  Score=235.69  Aligned_cols=159  Identities=31%  Similarity=0.609  Sum_probs=135.0

Q ss_pred             CCCcccc-cccccccceeecccc----cccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCC-ccccceEEEEEe
Q psy16044        271 AWPWQNL-ITSFLSAALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSKLRQIRVPL  344 (436)
Q Consensus       271 ~~p~~~~-~~~~~diali~l~~~----~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~  344 (436)
                      .||.|+. ....+|||||+|++|    +.++.. |+|||||.... ....+..|+++|||.+..... .+..|+++.+++
T Consensus        77 ~hp~y~~~~~~~~DiALl~L~~~~~~~~~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~  154 (248)
T 2r0l_A           77 PYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQF-VQPICLPEPGS-TFPAGHKCQIAGWGHLDENVSGYSSSLREALVPL  154 (248)
T ss_dssp             ECTTCCTTSTTTTCCEEEEECCSSSCSSCCBTT-BCCCBCCCTTC-CCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEB
T ss_pred             eCCccCcCCCCCCCEEEEEeCCcccccccCCCc-EEEEECCCCCC-CCCCCCEEEEEEccccCCCCCCCCchheEEEEee
Confidence            4888887 678899999999999    788887 99999997654 456789999999998765433 467899999999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.++|+........+++.|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|++|
T Consensus       155 ~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~W  233 (248)
T 2r0l_A          155 VADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDW  233 (248)
T ss_dssp             CCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHH
T ss_pred             eCHHHhCCccccCCcCCCCEEeECCCCCCCcCCCCccCCeEEEEE-CCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHH
Confidence            999999875322224689999998766567899999999999985 7899999999999999877789999999999999


Q ss_pred             HHHHHhhh
Q psy16044        425 IRKQINIA  432 (436)
Q Consensus       425 I~~~i~~~  432 (436)
                      |+++|+..
T Consensus       234 I~~~~~~~  241 (248)
T 2r0l_A          234 INDRIRPP  241 (248)
T ss_dssp             HHHHHC--
T ss_pred             HHHHhcCC
Confidence            99999754

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=99.97  E-value=4.1e-31  Score=238.90  Aligned_cols=157  Identities=31%  Similarity=0.536  Sum_probs=135.3

Q ss_pred             CCCcccc--cccccccceeecccccccCCCCeeeeccCCCCCC-CCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCc
Q psy16044        271 AWPWQNL--ITSFLSAALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI  347 (436)
Q Consensus       271 ~~p~~~~--~~~~~diali~l~~~~~~~~~~v~picl~~~~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~  347 (436)
                      .||.|+.  ....||||||+|++|+.++.. ++|||||..... ....+..|+++|||.+......+..|+++.+++++.
T Consensus        75 ~Hp~y~~~~~~~~~DIALl~L~~~~~~~~~-v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~  153 (235)
T 2wph_S           75 PHHNFNAAINTYNHDIALLELDEPLVLNSY-VTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDR  153 (235)
T ss_dssp             ECTTTTSSSSCCTTCCEEEEESSCCCCBTT-BCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEEEEEEECH
T ss_pred             eCCCCcccCCcCCCCEEEEEECCcCcCCCC-ccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEeeeeeeCH
Confidence            4899987  677899999999999999987 999999965431 123468899999998876666678899999999999


Q ss_pred             cccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHH
Q psy16044        348 SVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       348 ~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~  427 (436)
                      ++|++.+..  .++++|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|++||++
T Consensus       154 ~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~  230 (235)
T 2wph_S          154 ATCLRSTKF--TITNNMFCAGFHEGGRDSCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE  230 (235)
T ss_dssp             HHHHHTCSS--CCCTTEEEESCTTCSCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred             HHhcCcccC--CCCCCEEEeCCCCCCCccCCCCCCCceEEeE-CCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHH
Confidence            999987754  4689999998766667899999999999984 7899999999999999887889999999999999999


Q ss_pred             HHhh
Q psy16044        428 QINI  431 (436)
Q Consensus       428 ~i~~  431 (436)
                      +|+.
T Consensus       231 ~~~~  234 (235)
T 2wph_S          231 KTKL  234 (235)
T ss_dssp             HCCC
T ss_pred             HHhc
Confidence            8863

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=99.97  E-value=1e-30  Score=239.09  Aligned_cols=161  Identities=30%  Similarity=0.544  Sum_probs=138.1

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCC--CCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKR--PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~--~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+.....||||||+|++|+.++.. |+|||||.....  ....+..|+++|||.+......+..|+++.+++++.+
T Consensus        78 ~hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~  156 (254)
T 2bz6_H           78 IPSTYVPGTTNHDIALLRLHQPVVLTDH-VVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQ  156 (254)
T ss_dssp             EETTCCTTSCSSCCEEEEESSCCCCBTT-BCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHH
T ss_pred             ECCCCCCCCCcCcEEEEEECCccccCCC-ccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeeeeeeecHH
Confidence            4899998889999999999999999988 999999965421  2345789999999988766566788999999999999


Q ss_pred             ccccccCC---CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHH
Q psy16044        349 VCRDKYGD---SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       349 ~C~~~~~~---~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI  425 (436)
                      +|...+..   ...+++.|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|++||
T Consensus       157 ~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~-~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI  235 (254)
T 2bz6_H          157 DCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWL  235 (254)
T ss_dssp             HHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHH
T ss_pred             HHhhhhhccccCCccCCCEEeecCCCCCCccccccCCCceEEeE-CCEEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHH
Confidence            99887643   124688999998766667899999999999985 78999999999999998777899999999999999


Q ss_pred             HHHHhhhh
Q psy16044        426 RKQINIAV  433 (436)
Q Consensus       426 ~~~i~~~~  433 (436)
                      +++|+...
T Consensus       236 ~~~~~~~~  243 (254)
T 2bz6_H          236 QKLMRSEP  243 (254)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHhccC
Confidence            99997543

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=99.97  E-value=2.5e-30  Score=234.93  Aligned_cols=159  Identities=28%  Similarity=0.524  Sum_probs=137.2

Q ss_pred             CCCcccc-cccccccceeecccccccCCCCeeeeccCCCCCC-CCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNL-ITSFLSAALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~-~~~~~diali~l~~~~~~~~~~v~picl~~~~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+. ....||||||||++|+.++.. ++|||||..... ....+..|.++|||.+.. ...+..|+++.+++++.+
T Consensus        75 ~hp~y~~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~~~~~~~~~~~~~~GwG~~~~-~~~~~~l~~~~~~i~~~~  152 (242)
T 3tvj_B           75 IHEGYTHDAGFDNDIALIKLNNKVVINSN-ITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQ  152 (242)
T ss_dssp             ECTTCCTTSCSTTCCEEEEESSCCCCBTT-BCCCBCCCTTGGGGSCTTCEEEEEESCCCTT-SSCCSBCEEEEEEBCCHH
T ss_pred             eCCCCCCCCCCcCcEEEEEECCccccCCC-EecCCcCCCcccccccCCCEEEEEEeCCCCC-CCcCccceEEeeeEEcHH
Confidence            4898887 667899999999999999988 999999976542 356789999999998764 455788999999999999


Q ss_pred             ccccccCCC----ccCCCCceecccCCCCCCCccCCCCceeeeEe-cCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccH
Q psy16044        349 VCRDKYGDS----VELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYL  422 (436)
Q Consensus       349 ~C~~~~~~~----~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~  422 (436)
                      +|+..+...    ..++++|||++...+..+.|.|||||||++.. .+++|+|+||+||| .+|+..+.|++||||+.|+
T Consensus       153 ~C~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~  232 (242)
T 3tvj_B          153 KCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYI  232 (242)
T ss_dssp             HHHHHHHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEEESSTTCTTCCEEEEEGGGGH
T ss_pred             HHHHhhccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeCCCCCCCCCCCeEEEEHHHHH
Confidence            999876432    23789999998766667999999999999986 57899999999999 7898878899999999999


Q ss_pred             HHHHHHHhh
Q psy16044        423 PWIRKQINI  431 (436)
Q Consensus       423 ~WI~~~i~~  431 (436)
                      +||+++|++
T Consensus       233 ~WI~~~i~~  241 (242)
T 3tvj_B          233 PWIENIISD  241 (242)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999875

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=99.97  E-value=3.4e-30  Score=234.73  Aligned_cols=158  Identities=30%  Similarity=0.501  Sum_probs=135.5

Q ss_pred             CCCcccccc--cccccceeecccc----cccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCC-ccccceEEEEE
Q psy16044        271 AWPWQNLIT--SFLSAALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSKLRQIRVP  343 (436)
Q Consensus       271 ~~p~~~~~~--~~~diali~l~~~----~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~  343 (436)
                      .||.|+...  ..||||||+|++|    +.++.. ++|||||.... ....+..|+++|||.+..... .+..|+++.++
T Consensus        83 ~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~-v~pi~lp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~  160 (247)
T 3mhw_U           83 LHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT-IQTISLPSMYN-DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK  160 (247)
T ss_dssp             ECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTT-BCCCBCCCTTC-CCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEE
T ss_pred             ECCCCCCCcCCCCCcEEEEEeCCccccccccCCc-ccccccCCCcC-CCCCCCEEEEEecCCcCCCCcccchhheeeEEE
Confidence            489998766  6799999999999    778877 99999998654 456789999999998765543 47789999999


Q ss_pred             eeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHH
Q psy16044        344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       344 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~  423 (436)
                      +++.++|+..+.....+.++|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|++
T Consensus       161 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~-~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~  239 (247)
T 3mhw_U          161 LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLP  239 (247)
T ss_dssp             EECHHHHTSTTTTGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEEEEEGGGCHH
T ss_pred             EEChHHhcCccccCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEE-CCCEEEEEEEEECCCCCCCCCCeEEEEHHHHHH
Confidence            9999999986433335789999998776667999999999999985 789999999999999998788999999999999


Q ss_pred             HHHHHHhh
Q psy16044        424 WIRKQINI  431 (436)
Q Consensus       424 WI~~~i~~  431 (436)
                      ||+++|++
T Consensus       240 WI~~~~~e  247 (247)
T 3mhw_U          240 WIRSHTKE  247 (247)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHhcC
Confidence            99999864

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=99.97  E-value=3.5e-30  Score=239.18  Aligned_cols=159  Identities=31%  Similarity=0.609  Sum_probs=135.0

Q ss_pred             CCCcccc-cccccccceeecccc----cccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCC-ccccceEEEEEe
Q psy16044        271 AWPWQNL-ITSFLSAALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSKLRQIRVPL  344 (436)
Q Consensus       271 ~~p~~~~-~~~~~diali~l~~~----~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~  344 (436)
                      .||.|+. ....+|||||+|++|    +.++.. |+|||||.... ....+..|+++|||.+..... .+..|+++.+++
T Consensus       112 ~hp~y~~~~~~~~DIALl~L~~~~~~~v~~~~~-v~picLp~~~~-~~~~g~~~~v~GwG~~~~~~~~~~~~L~~~~v~i  189 (283)
T 1yc0_A          112 PYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQF-VQPICLPEPGS-TFPAGHKCQIAGWGHLDENVSGYSSSLREALVPL  189 (283)
T ss_dssp             ECTTCCTTSTTTTCCEEEEECCBTTBSSCCBTT-BCCCBCCCTTC-CCCTTCEEEEEESSCSBTTBCSCCSBCEEEEEEB
T ss_pred             ecCccccCCCCCCceEEEEeCCCccccccccCc-eeeeECCCCcC-CCCCCCEEEEEEeCccCCCCCccCchheEeEEEE
Confidence            4899987 778899999999999    788887 99999997654 446789999999998765432 467899999999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.++|+........+++.|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|++|
T Consensus       190 ~~~~~C~~~~~~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~-~g~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~W  268 (283)
T 1yc0_A          190 VADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDW  268 (283)
T ss_dssp             CCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHH
T ss_pred             ECHHHhcCccccCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEE-CCcEEEEEEEEECCCCCCCCCCeEEEEhhhHHHH
Confidence            999999875322234789999998766567899999999999985 7899999999999999877889999999999999


Q ss_pred             HHHHHhhh
Q psy16044        425 IRKQINIA  432 (436)
Q Consensus       425 I~~~i~~~  432 (436)
                      |+++|+..
T Consensus       269 I~~~i~~~  276 (283)
T 1yc0_A          269 INDRIRPP  276 (283)
T ss_dssp             HHHHCC--
T ss_pred             HHHHhcCC
Confidence            99999754

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.97  E-value=2.3e-31  Score=236.64  Aligned_cols=187  Identities=19%  Similarity=0.192  Sum_probs=131.6

Q ss_pred             CCCCCcceEEEeeeccCCCCCCeeeEEEEec---CCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeee
Q psy16044         34 IRGAWPWQVSLQVLHPRLGLMPHWCGAVLIH---PSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVE  110 (436)
Q Consensus        34 ~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs---~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~  110 (436)
                      .+++|||+++|++...  + ..++|+||||+   ++||||||||+...... .....+.|++|..+....   ...+.|+
T Consensus         2 ~~~~~p~~g~l~~~~~--~-~~~~CgGslI~s~s~~~VLTAAHC~~~~~~~-~~~~~~~v~~G~~~~~~~---~~~~~v~   74 (218)
T 3cp7_A            2 NPADSPHIGKVFFSTN--Q-GDFVCSANIVASANQSTVATAGHCLHDGNGG-QFARNFVFAPAYDYGESE---HGVWAAE   74 (218)
T ss_dssp             -CTTCTTEEEEEEEET--T-EEEEEEEEEBCCTTSCEEEECGGGTBCCTTC-BBCEEEEEEETCSSSCCT---TCCEEEE
T ss_pred             CCCCCceEEEEEEEcC--C-CCeEEEEEEEecCCCCEEEEChHhcCcCCCC-eeecCEEEECcccCCCCC---ccEEEEE
Confidence            3578999999988532  1 26899999999   99999999998652100 113457788887654322   2356799


Q ss_pred             EEEeCCCCC---CCCCceeEEEeCCC--CCCCCCcee-eeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        111 RIRVHEEFH---NYHHDIALLKLSRP--TSARDKGVR-AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       111 ~i~~hp~y~---~~~~DiAll~L~~~--~~~~~~~v~-pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ++++||+|+   ...||||||||++|  +. ++..++ +++|+..  .  ..+..++++|||.+.....  ..|      
T Consensus        75 ~~~~hp~y~~~~~~~~DiAll~L~~~~~~~-~~~~v~~~~~l~~~--~--~~g~~~~v~GwG~~~~~~~--~~l------  141 (218)
T 3cp7_A           75 ELVTSAEWANRGDFEHDYAFAVLETKGGTT-VQQQVGTASPIAFN--Q--PRGQYYSAYGYPAAAPFNG--QEL------  141 (218)
T ss_dssp             EEEECHHHHHHCCGGGCCEEEEECCBTTBC-HHHHHSCCBCBCCS--C--CSSCEEEEEECCCSTTCCS--SSC------
T ss_pred             EEEECcccccCCCCcCCEEEEEEeCCCCcC-hhHhcCcccceeec--C--CCCCEEEEEeCCCCCCCCC--cee------
Confidence            999999995   36799999999999  66 556788 8999763  1  3578899999998653111  112      


Q ss_pred             ccchhhhhhh-cCCC-cCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCccc
Q psy16044        185 LHNISVCRDK-YGDS-VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRY  254 (436)
Q Consensus       185 ~~~~~~C~~~-~~~~-~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y  254 (436)
                          ..|... +... ......|+|+.        |.|||||||++. .+++++|+||+|||.+ |+....|
T Consensus       142 ----~~C~~~~~~~~~~~~~~~~~Ca~--------~~GDSGGPlv~~-~~g~~~lvGIvS~G~g-c~~~~~~  199 (218)
T 3cp7_A          142 ----HSCHGTATNDPMGSSTQGIPCNM--------TGGSSGGPWFLG-NGTGGAQNSTNSYGYT-FLPNVMF  199 (218)
T ss_dssp             ----EEEEEECEECTTSSSCEEEECCC--------CTTCTTCEEEES-SSSSSCEEEECCEEET-TEEEEEE
T ss_pred             ----eEeeeeEEcCCCCCceEEecCCC--------CCCCcCCeeEEc-cCCCeEEEEEEccccC-CCCCcEE
Confidence                356542 1111 11223789982        569999999997 4667899999999987 6654443

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=99.97  E-value=3.9e-30  Score=233.36  Aligned_cols=155  Identities=30%  Similarity=0.551  Sum_probs=132.5

Q ss_pred             CCCcc--cccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQ--NLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~--~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|  +.....+|||||+|++|+.++.. ++|||||....... .++.|+++|||.+......+..|+++.+++++.+
T Consensus        79 ~hp~y~~~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~  156 (241)
T 1m9u_A           79 MHENYGAGTASYSNDIAILHLATSISLGGN-IQAAVLPANNNNDY-AGTTCVISGWGRTDGTNNLPDILQKSSIPVITTA  156 (241)
T ss_dssp             ECTTTTCSSSTTTTCCEEEEESSCCCCCSS-CCCCCCCSCSSCCC-TTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHH
T ss_pred             eCCCcCCCCCcccccEEEEEecCccccCCC-ccccCcCCCcCCCC-CCCEEEEEeCcccCCCCCcccceeEeeEEEEcHH
Confidence            48999  67778999999999999999988 99999998733223 7899999999998765556789999999999999


Q ss_pred             ccccccCCCcc--CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEe----cCCCCCCCCCeEEEeCcccH
Q psy16044        349 VCRDKYGDSVE--LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF----GSGCAKSGYPDVYTKLSFYL  422 (436)
Q Consensus       349 ~C~~~~~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~----~~~c~~~~~p~v~t~V~~~~  422 (436)
                      +|+..+.....  +.++|||++...+..+.|.|||||||++..  ++|+|+||+||    +.+|+..+.|++||||++|+
T Consensus       157 ~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~--~~~~l~Gi~S~~~~~g~~C~~~~~p~vyt~V~~~~  234 (241)
T 1m9u_A          157 QCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD--GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYL  234 (241)
T ss_dssp             HHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES--SSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTH
T ss_pred             HhhhhhcccCCCcccCCcEEECcCCCCCeeecCcCCccEEEeC--CCEEEEEEEEEeccCCCCccCCCCCEEEEEhHHhH
Confidence            99987643222  789999998766667899999999999973  88999999999    46788777899999999999


Q ss_pred             HHHHHHH
Q psy16044        423 PWIRKQI  429 (436)
Q Consensus       423 ~WI~~~i  429 (436)
                      +||+++|
T Consensus       235 ~WI~~~~  241 (241)
T 1m9u_A          235 GWIGDNS  241 (241)
T ss_dssp             HHHHHHC
T ss_pred             hHHhhhC
Confidence            9999875

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=99.97  E-value=2.2e-30  Score=235.21  Aligned_cols=156  Identities=27%  Similarity=0.465  Sum_probs=131.8

Q ss_pred             CCCccccc---ccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCc
Q psy16044        271 AWPWQNLI---TSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI  347 (436)
Q Consensus       271 ~~p~~~~~---~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~  347 (436)
                      .||.|+..   ...||||||||++|+.++.. |+|||||.... ....+..|+++|||.+...  .+..|+++.+++++.
T Consensus        79 ~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~--~~~~L~~~~~~~~~~  154 (242)
T 2qy0_B           79 VHPDYRQDESYNFEGDIALLELENSVTLGPN-LLPICLPDNDT-FYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANP  154 (242)
T ss_dssp             ECTTCCTTCSSCCTTCCEEEEESSCCCCBTT-BCCCBCCCSGG-GGCTTCEEEEEECCCCSSS--CCSBCEEEEEEBCCH
T ss_pred             ECCCCccCcCCCCCCcEEEEEECCCCcCCCC-cceeecCCCcc-ccCCCCeEEEEeeccCCCc--CCccceEEEEEEeCH
Confidence            58999865   67899999999999999988 99999997653 3457889999999987643  567899999999999


Q ss_pred             cccccccCC---CccCCCCceecccCCCCCCCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHH
Q psy16044        348 SVCRDKYGD---SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       348 ~~C~~~~~~---~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~  423 (436)
                      ++|+..+..   ...++++|||++...+..+.|.|||||||++.. .+++|+|+||+|||.+|+.  .|++||||++|++
T Consensus       155 ~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~--~~~vyt~V~~y~~  232 (242)
T 2qy0_B          155 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVD  232 (242)
T ss_dssp             HHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHH
T ss_pred             HHHHHHhccccccccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCcCC--CCcEEEEHHHHHH
Confidence            999986532   124688999998765567999999999999964 5789999999999999975  3899999999999


Q ss_pred             HHHHHHhhh
Q psy16044        424 WIRKQINIA  432 (436)
Q Consensus       424 WI~~~i~~~  432 (436)
                      ||+++|+++
T Consensus       233 WI~~~~~~~  241 (242)
T 2qy0_B          233 WIKKEMEEE  241 (242)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHhhcc
Confidence            999999754

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=99.96  E-value=6.2e-30  Score=229.02  Aligned_cols=148  Identities=30%  Similarity=0.601  Sum_probs=130.3

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||||++|+.++.. ++|||||....   ..++.|.++|||.+... ..+..|+++.+++++.++|
T Consensus        74 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~-v~pi~l~~~~~---~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~~~~~~~C  148 (223)
T 2bdg_A           74 RHPEYNRPLLANDLMLIKLDESVSESDT-IRSISIASQCP---TAGNSCLVSGWGLLANG-RMPTVLQCVNVSVVSEEVC  148 (223)
T ss_dssp             ECTTTTSSTTCSCCEEEEESSCCCCCSS-CCCCCBCSSCC---CTTCEEEEEESCCCTTS-CCCSBCEEEEEEBCCHHHH
T ss_pred             eCCCCCCCCCcCcEEEEEECCcccCCCc-eecccCCCCCC---CCCCEEEEEeCcccCCC-CCCCcceEEEEEEeCHHHh
Confidence            5999998889999999999999999988 99999997543   67889999999987654 4577899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      ++.+..  .+.+.|||++...+..+.|.|||||||++++     +|+||+|||. .|+..+.|++||||+.|++||+++|
T Consensus       149 ~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i  221 (223)
T 2bdg_A          149 SKLYDP--LYHPSMFCAGGGQDQKDSCNGDSGGPLICNG-----YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTV  221 (223)
T ss_dssp             HHHSTT--TCCTTEEEECCSTTCCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHH
T ss_pred             hhhhCC--CCCCCeEeccCCCCCCCcCCCCCCchheEcc-----EEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHh
Confidence            998765  4689999998755567899999999999942     6999999997 6987788999999999999999998


Q ss_pred             h
Q psy16044        430 N  430 (436)
Q Consensus       430 ~  430 (436)
                      +
T Consensus       222 ~  222 (223)
T 2bdg_A          222 Q  222 (223)
T ss_dssp             H
T ss_pred             c
Confidence            6

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=99.96  E-value=1.3e-29  Score=229.25  Aligned_cols=154  Identities=30%  Similarity=0.579  Sum_probs=132.0

Q ss_pred             CCCccccccc--ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITS--FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~--~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+....  .+|||||||++|+.++.. ++|||||.... ..+.++.|.++|||.+......+..|+++.+++++.+
T Consensus        79 ~hp~y~~~~~~~~~DiALl~L~~~~~~~~~-v~picL~~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~  156 (236)
T 1elt_A           79 IHSGWNSDDVAGGYDIALLRLNTQASLNSA-VQLAALPPSNQ-ILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHA  156 (236)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCSSS-CCCCCCCCTTC-CCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHH
T ss_pred             ECCCCCCCCCCCCccEEEEECCCCCccCCc-EEeccCCCccc-cCCCCCEEEEEeCCCcCCCCCcChhheEeEeeecCHH
Confidence            4899987766  899999999999999987 99999997664 3467889999999988766566788999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcccHHHHH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIR  426 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~~~~WI~  426 (436)
                      +|+..+.....+++.|||++. .+ .+.|.|||||||++.. +++|+|+||+||+.  +|+..+.|++||||++|++||+
T Consensus       157 ~C~~~~~~~~~~~~~~~Ca~~-~~-~~~C~GDSGgPL~~~~-~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~  233 (236)
T 1elt_A          157 TCSSSGWWGSTVKTTMVCAGG-GA-NSGCNGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMN  233 (236)
T ss_dssp             HHTSTTTTGGGSCTTEEEECC-SS-CBCCTTCTTCEEEEEE-TTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHH
T ss_pred             HhccccccCCcCCcceEEecC-CC-CccCCCCCCCeeEEEE-CCEEEEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHH
Confidence            999863222247899999984 33 6899999999999985 78999999999985  7987778999999999999999


Q ss_pred             HHH
Q psy16044        427 KQI  429 (436)
Q Consensus       427 ~~i  429 (436)
                      ++|
T Consensus       234 ~~i  236 (236)
T 1elt_A          234 GIM  236 (236)
T ss_dssp             HHC
T ss_pred             hhC
Confidence            875

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=99.96  E-value=3.8e-30  Score=243.37  Aligned_cols=155  Identities=27%  Similarity=0.468  Sum_probs=131.6

Q ss_pred             CCCccccc---ccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCc
Q psy16044        271 AWPWQNLI---TSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI  347 (436)
Q Consensus       271 ~~p~~~~~---~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~  347 (436)
                      .||.|+..   ...||||||+|++|+.++.. |+|||||.... ....+..|+++|||.+...  .+..|+++.+++++.
T Consensus       168 ~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~-v~PicLp~~~~-~~~~g~~~~v~GWG~t~~~--~~~~L~~~~v~i~~~  243 (329)
T 1md8_A          168 VHPDYRQDESYNFEGDIALLELENSVTLGPN-LLPICLPDNDT-FYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANP  243 (329)
T ss_dssp             ECSSCCSSCTTCCTTCCEEEEESSCCCCBTT-BCCCBCCCSGG-GGCTTCEEEEEECCBCSSS--BCSBCEEEEEEBCCH
T ss_pred             ECCCcccccCCCCCccEEEEEECCcccCCCc-eEccccCCCcc-ccCCCCEEEEEeCCCCCCC--CCccceEEEEEEcCH
Confidence            58999864   67899999999999999988 99999997653 3356889999999987643  577899999999999


Q ss_pred             cccccccCC---CccCCCCceecccCCCCCCCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHH
Q psy16044        348 SVCRDKYGD---SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       348 ~~C~~~~~~---~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~  423 (436)
                      ++|++.+..   ...++++||||+...+..+.|+|||||||++.. .+++|+|+||+|||.+|+.  .|++||||+.|++
T Consensus       244 ~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~~l~GIvS~G~~C~~--~~gvyT~V~~y~~  321 (329)
T 1md8_A          244 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVD  321 (329)
T ss_dssp             HHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEEEEEEEEEECSSSSS--SCEEEEEGGGTHH
T ss_pred             HHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcEEEEEEEEECCCcCC--CCcEEEEHHHHHH
Confidence            999886532   124688999998765567999999999999964 5689999999999999984  3899999999999


Q ss_pred             HHHHHHhh
Q psy16044        424 WIRKQINI  431 (436)
Q Consensus       424 WI~~~i~~  431 (436)
                      ||+++|++
T Consensus       322 WI~~~i~~  329 (329)
T 1md8_A          322 WIKKEMEE  329 (329)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99999863

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=99.96  E-value=8.4e-30  Score=230.02  Aligned_cols=155  Identities=32%  Similarity=0.569  Sum_probs=131.2

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+..+..||||||+|++|+.++.. ++|||||.... ....++.|+++|||.+......+..|+++.+++++.++|
T Consensus        74 ~Hp~y~~~~~~~DIALl~L~~~~~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  151 (234)
T 1orf_A           74 PYPCYDPATREGDLKLLQLTEKAKINKY-VTILHLPKKGD-DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVC  151 (234)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCSSS-SCCCCCCSSCC-CCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHH
T ss_pred             cCCCCCCCCCCCCEEEEEECCcCccCCC-eeeeecCCCcC-CCCCCCEEEEEECCcCCCCCCccccceEeEEEeeCHHHc
Confidence            4999998899999999999999999988 99999997665 456789999999998876555678899999999999999


Q ss_pred             cc--ccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCc-ccHHHH
Q psy16044        351 RD--KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLS-FYLPWI  425 (436)
Q Consensus       351 ~~--~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~-~~~~WI  425 (436)
                      ++  .+.....+.++|||++...+..+.|.|||||||+++   +  +|+||+|||.  +|+..+.|++||||+ +|++||
T Consensus       152 ~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~~~C~~~~~p~vyt~v~~~~~~WI  226 (234)
T 1orf_A          152 NDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE---G--VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI  226 (234)
T ss_dssp             TSTTTTTTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEET---T--EEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHH
T ss_pred             CCccccccCCccCCCEEEecCCCCCCcCCCCCCCCeEEEC---C--EEEEEEEEcCCCCCCCCCCCCEEEEchHHHHHHH
Confidence            84  332111234599999876556799999999999994   2  6999999997  798777899999999 999999


Q ss_pred             HHHHhhh
Q psy16044        426 RKQINIA  432 (436)
Q Consensus       426 ~~~i~~~  432 (436)
                      +++|+..
T Consensus       227 ~~~~~~~  233 (234)
T 1orf_A          227 IMTIKGA  233 (234)
T ss_dssp             HHHHCC-
T ss_pred             HHHHHhc
Confidence            9999764

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=99.96  E-value=1.7e-29  Score=228.89  Aligned_cols=148  Identities=28%  Similarity=0.505  Sum_probs=125.9

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL  360 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  360 (436)
                      .+|||||+|++|+.++.. ++|||||.... ....+..|.++|||.+.... .+..|+++.+++++.++|+..+.....+
T Consensus        82 ~~DiALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~~~~~  158 (240)
T 1si5_H           82 GSDLVLMKLARPAVLDDF-VSTIDLPNYGS-TIPEKTSCSVYGWGYTGLIN-YDGLLRVAHLYIMGNEKCSQHHRGKVTL  158 (240)
T ss_dssp             TTCEEEEEESSCCCCSSS-CCCCBCCCTTC-CCCTTCEEEEEESSCCCCSS-CCCBCEEEEEEEECGGGTCC-------C
T ss_pred             CCcEEEEEECCccccCCc-eeccCcCCcCC-CCCCCCEEEEEEeCCCCCCC-CCCeeEEEEEeecCHHHhhhhhcCCccC
Confidence            799999999999999987 99999997654 45678999999999876543 4678999999999999999887543337


Q ss_pred             CCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHhhh
Q psy16044        361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       361 ~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      .+.|||++...+..+.|.|||||||++.. +++|+|+||+|||.+|+..+.|++||||+.|++||+++|+..
T Consensus       159 ~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  229 (240)
T 1si5_H          159 NESEICAGAEKIGSGPCEGDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTY  229 (240)
T ss_dssp             CTTEEEEECSSSCCBCCTTCTTCEEEEEC-SSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSC
T ss_pred             CCCEEeecCCCCCCEeccCCCCCcEEEEE-CCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHhcc
Confidence            89999998766567999999999999985 789999999999999987778999999999999999999754

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=99.96  E-value=9.5e-30  Score=248.17  Aligned_cols=159  Identities=27%  Similarity=0.502  Sum_probs=135.8

Q ss_pred             CCCccccc-ccccccceeecccccccCCCCeeeeccCCCCCC-CCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLI-TSFLSAALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~-~~~~diali~l~~~~~~~~~~v~picl~~~~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+.. ...||||||||++|+.++.. |+|||||..... .+..+..++++|||.+... ..+..|+++.+++++.+
T Consensus       236 ~Hp~y~~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~-~~~~~L~~~~v~v~~~~  313 (403)
T 1zjk_A          236 IHEGYTHDAGFDNDIALIKLNNKVVINSN-ITPICLPRKEAESFMRTDDIGTASGWGLTQRG-FLARNLMYVDIPIVDHQ  313 (403)
T ss_dssp             ECTTCCTTSCCTTCCEEEEESSCCCCBTT-BCCCBCCCGGGGGGSSTTCEEEEEESCTTSSS-CCCSBCEEEEEEEECHH
T ss_pred             ECCCCCCCCCCcccEEEEEeCCcCcCCCc-eecccCCCcccccccCCCCeEEEEcCCcCCCC-ccCcccEEEEEeEeCHH
Confidence            48999877 78899999999999999988 999999976542 2457889999999987654 45788999999999999


Q ss_pred             ccccccCCC----ccCCCCceecccCCCCCCCccCCCCceeeeEe-cCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccH
Q psy16044        349 VCRDKYGDS----VELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYL  422 (436)
Q Consensus       349 ~C~~~~~~~----~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~  422 (436)
                      +|+..+...    ..++++||||+...+.++.|+|||||||++.. .+++|+|+||+||| .+|+..+.|++||||+.|+
T Consensus       314 ~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g~~~C~~~~~p~vyt~V~~y~  393 (403)
T 1zjk_A          314 KCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYI  393 (403)
T ss_dssp             HHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEECSCC--CCCCEEEEEGGGGH
T ss_pred             HHhhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEECCCCCCCCCCCeEEEEHHHHH
Confidence            999877532    14789999998776667999999999999986 46899999999999 7898777899999999999


Q ss_pred             HHHHHHHhh
Q psy16044        423 PWIRKQINI  431 (436)
Q Consensus       423 ~WI~~~i~~  431 (436)
                      +||+++|+.
T Consensus       394 ~WI~~~i~~  402 (403)
T 1zjk_A          394 PWIENIISD  402 (403)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999999975

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=99.96  E-value=9.3e-30  Score=228.65  Aligned_cols=151  Identities=27%  Similarity=0.461  Sum_probs=130.4

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||||++|+.++.. ++|||||.... ....++.|+++|||.+......+..|+++.+++++.++|
T Consensus        76 ~Hp~y~~~~~~~DIALl~L~~~~~~~~~-v~picLp~~~~-~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C  153 (227)
T 1iau_A           76 PHPAYNPKNFSNDIMLLQLERKAKRTRA-VQPLRLPSNKA-QVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKC  153 (227)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCBTT-BCCCCCCCTTC-CCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHH
T ss_pred             CCCCCCCCCCCCCeEEEEECCcccCCCc-eecccCCCCCC-CCCCCCEEEEEEcccCCCCCCcCceeeEeeeeeechHHh
Confidence            5999998889999999999999999988 99999997664 446789999999998876556678999999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+... ...+.|||++...+..+.|.|||||||+++   +  +|+||+|||  |+....|++||||+.|++||+++|+
T Consensus       154 ~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g--c~~~~~p~vyt~v~~~~~WI~~~~~  225 (227)
T 1iau_A          154 ESDLRHY-YDSTIELCVGDPEIKKTSFKGDSGGPLVCN---K--VAQGIVSYG--RNNGMPPRACTKVSSFVHWIKKTMK  225 (227)
T ss_dssp             HHHTTTT-CCTTTEEEESCTTSCCBCCTTCTTSEEEET---T--EEEEEEEEE--CTTSCSCEEEEEGGGGHHHHHHHHH
T ss_pred             hhHhccc-cCCCcEEEeECCCCCCeeeecCCCchheEe---e--EEEEEEeEe--cCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            9887542 234559999877656799999999999994   2  699999999  7665679999999999999999997


Q ss_pred             h
Q psy16044        431 I  431 (436)
Q Consensus       431 ~  431 (436)
                      +
T Consensus       226 ~  226 (227)
T 1iau_A          226 R  226 (227)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=99.96  E-value=8.9e-30  Score=230.82  Aligned_cols=155  Identities=25%  Similarity=0.511  Sum_probs=132.6

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCC-ccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD-LVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|+.....||||||+|++|+.++.. |+|||||...  ....++.|+++|||.+..... .+..|+++.+++++.++
T Consensus        80 ~hp~y~~~~~~~DIALl~L~~~~~~~~~-v~pi~l~~~~--~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~  156 (240)
T 1mza_A           80 PFSRVTSDPQSNDIMLVKLQTAAKLNKH-VKMLHIRSKT--SLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKL  156 (240)
T ss_dssp             ECCCSSCSSSSSCCEEEEESSCCCCBTT-BCCCCBCSSC--CCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHH
T ss_pred             eCCCccCCCCCceEEEEEeCCCcccCCc-eeeeecCCcc--cCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHH
Confidence            4899988888999999999999999988 9999999753  246789999999998876544 57889999999999999


Q ss_pred             cc--cccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcc-cHHHHH
Q psy16044        350 CR--DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSF-YLPWIR  426 (436)
Q Consensus       350 C~--~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~-~~~WI~  426 (436)
                      |+  ..+.....++++|||++...+..+.|.|||||||+|+   +  +|+||+|||.+|+..+.|++||+|+. |++||+
T Consensus       157 C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~---~--~l~Gi~S~g~~C~~~~~p~vyt~v~~~y~~WI~  231 (240)
T 1mza_A          157 CNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICK---G--VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIK  231 (240)
T ss_dssp             HTSTTTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEET---T--EEEEEECSSCCSSCTTCCEEEEECCHHHHHHHH
T ss_pred             cCCcceeCCCCcCCCCeEeecCCCCCCccCCCCCCCeeEEC---C--EEEEEEEECCCCCCCCCCcEEEeChHHHHHHHH
Confidence            98  4454322468999999876566789999999999994   2  69999999999988788999999999 999999


Q ss_pred             HHHhhhh
Q psy16044        427 KQINIAV  433 (436)
Q Consensus       427 ~~i~~~~  433 (436)
                      ++|+...
T Consensus       232 ~~~~~~~  238 (240)
T 1mza_A          232 SNLVPPH  238 (240)
T ss_dssp             HHTCCSC
T ss_pred             HhccCCC
Confidence            9997654

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=99.96  E-value=1.5e-29  Score=227.14  Aligned_cols=150  Identities=31%  Similarity=0.545  Sum_probs=129.7

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+..+..||||||||++|+.++.. ++|||||.... ....++.|.++|||.+......+..|+++.+++++.++|
T Consensus        76 ~Hp~y~~~~~~~DIALl~L~~~~~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C  153 (227)
T 1euf_A           76 PHPDYNDETLANDIMLLKLTRKADITDK-VSPINLPRSLA-EVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKC  153 (227)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCCSS-CCCCCCCCTTC-CCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHH
T ss_pred             eCCCCCCCCCcCceEEEEECCcCcCCCc-eeccCCCCccc-cCCCCCEEEEEEEccCCCCCCCchhheEeEeccccHHHh
Confidence            5999998889999999999999999988 99999997655 456789999999999876556678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+..  .++++|||++...+....|.|||||||+|+   +  +|+||+|||  |+....|++||||+.|++||+++|+
T Consensus       154 ~~~~~~--~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~---~--~l~Gi~S~g--c~~~~~p~vyt~V~~y~~WI~~~~~  224 (227)
T 1euf_A          154 IARFKN--YIPFTQICAGDPSKRKNSFSGDSGGPLVCN---G--VAQGIVSYG--RNDGTTPDVYTRISSFLSWIHSTMR  224 (227)
T ss_dssp             HTTCTT--CCTTTEEEESCTTSCCBCCTTCTTCEEEET---T--EEEEEEEEC--CTTCCSCEEEEEGGGTHHHHHHHTC
T ss_pred             hHhhcC--cCCCcEEEccCCCCCCcccccCCCCceEEC---C--EEEEEEEEe--CCCCCCCeEEEEHHHhHHHHHHHHh
Confidence            988765  468899999876543467899999999994   2  699999998  7666679999999999999999987


Q ss_pred             h
Q psy16044        431 I  431 (436)
Q Consensus       431 ~  431 (436)
                      .
T Consensus       225 ~  225 (227)
T 1euf_A          225 R  225 (227)
T ss_dssp             -
T ss_pred             h
Confidence            4

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=99.96  E-value=2e-29  Score=239.46  Aligned_cols=157  Identities=25%  Similarity=0.510  Sum_probs=130.3

Q ss_pred             CCCcccc-------cccccccceeecccccccCCCCeeeeccCCCCCC-CCCCCCeEEEEecCCCCCCCCccccceEEEE
Q psy16044        271 AWPWQNL-------ITSFLSAALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  342 (436)
Q Consensus       271 ~~p~~~~-------~~~~~diali~l~~~~~~~~~~v~picl~~~~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~  342 (436)
                      .||.|+.       .+..||||||||++|+.++.. |+|||||..... ....+..|+++|||.+... ..+..|+++.+
T Consensus       155 ~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~-v~PicLp~~~~~~~~~~g~~~~v~GWG~t~~~-~~~~~L~~~~v  232 (333)
T 1elv_A          155 IHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPT-VSPICLPGTSSDYNLMDGDLGLISGWGRTEKR-DRAVRLKAARL  232 (333)
T ss_dssp             ECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTT-BCCCBCCCSSGGGCCCTTCEEEEEESCCCSSC-SSCSBCEEEEE
T ss_pred             ECCCCcccccccccCCCcceEEEEEeCCCCcCCCc-ccceecCCCcccccccCCcEEEEEECcCcCCC-CcCceeEEEEE
Confidence            5888884       467899999999999999988 999999976542 2456899999999987653 35778999999


Q ss_pred             EeeCccccccccCCC-------ccCCCCceecccCCCCCCCccCCCCceeeeEec-CC-cEEEEEEEEecCCCCCCCCCe
Q psy16044        343 PLHNISVCRDKYGDS-------VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DG-RWYLAGITSFGSGCAKSGYPD  413 (436)
Q Consensus       343 ~~~~~~~C~~~~~~~-------~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~-~~-~~~l~Gi~S~~~~c~~~~~p~  413 (436)
                      ++++.++|++.+...       ..++++||||+... +++.|+|||||||++... ++ +|+|+||+|||.+|+.   |+
T Consensus       233 ~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~GDSGGPL~~~~~~~~~~~~l~GIvS~g~~C~~---~~  308 (333)
T 1elv_A          233 PVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---YG  308 (333)
T ss_dssp             EEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSSTTS---EE
T ss_pred             EEEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcCcCCCceEEEECCCCcEEEEEEEEeeCCCCCC---Cc
Confidence            999999999876431       24789999998655 568999999999999752 35 9999999999999974   89


Q ss_pred             EEEeCcccHHHHHHHHhhhh
Q psy16044        414 VYTKLSFYLPWIRKQINIAV  433 (436)
Q Consensus       414 v~t~V~~~~~WI~~~i~~~~  433 (436)
                      +||||+.|++||+++|+...
T Consensus       309 vyt~V~~y~~WI~~~~~~~~  328 (333)
T 1elv_A          309 LYTRVKNYVDWIMKTMQENS  328 (333)
T ss_dssp             EEEEGGGGHHHHHHHHHHTC
T ss_pred             EEeEHHHHHHHHHHHHhccC
Confidence            99999999999999997653

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=99.96  E-value=2.1e-29  Score=225.49  Aligned_cols=147  Identities=33%  Similarity=0.603  Sum_probs=127.7

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||+|++|+.++.. ++|||||.....  ..+..|.++|||.+......+..|+++.+++++.++|
T Consensus        75 ~hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picL~~~~~~--~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  151 (222)
T 1eq9_A           75 VNKNYDDFLLRNDVALVHLTNPIKFNDL-VQPIKLSTNDED--LESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQC  151 (222)
T ss_dssp             ECTTCBTTTTBCCCEEEEESSCCCCBTT-BCCCEECSCCTT--CTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHH
T ss_pred             ECCCCCCCCCCCCEEEEEECCccccCCc-eEccCCCCCCcC--CCCCEEEEEcccccCCCCcccchheEeEEEEeCHHHh
Confidence            5899998889999999999999999988 999999977652  5788999999998876555678899999999999999


Q ss_pred             c-cccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        351 R-DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       351 ~-~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      + ..+.    +.+.|||++. ..+.+.|.|||||||+++   +  +|+||+|||.+|+. +.|++||||+.|++||+++|
T Consensus       152 ~~~~~~----~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~C~~-~~p~vyt~V~~~~~WI~~~~  220 (222)
T 1eq9_A          152 ERDQWR----VIDSHICTLT-KRGEGACHGDSGGPLVAN---G--AQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANL  220 (222)
T ss_dssp             HHHSSS----CCTTEEEECC-CTTCBCCTTCTTCEEEET---T--EEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTS
T ss_pred             CcccCC----CCccEEeecC-CCCCeeeeCCccceEEEC---C--EEEEEEEECCCcCC-CCCCEEEEHHHHHHHHHHHh
Confidence            8 4442    5789999976 344689999999999984   2  69999999999987 67999999999999999988


Q ss_pred             hh
Q psy16044        430 NI  431 (436)
Q Consensus       430 ~~  431 (436)
                      ++
T Consensus       221 ~~  222 (222)
T 1eq9_A          221 KK  222 (222)
T ss_dssp             CC
T ss_pred             hC
Confidence            63

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=99.96  E-value=2.8e-29  Score=225.12  Aligned_cols=152  Identities=26%  Similarity=0.407  Sum_probs=131.2

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....+|||||||++|+.     +.|+||+....   ..+..|.++|||.+......+..|+++.+++++.++|
T Consensus        72 ~hp~y~~~~~~~DIALl~L~~~v~-----~~~i~l~~~~~---~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C  143 (224)
T 3beu_A           72 QAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTA---YNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAAC  143 (224)
T ss_dssp             ECTTCCCGGGSCCCEEEEESSCCC-----SCCCEECCSST---TSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHH
T ss_pred             eCCCcCCCcCCCCEEEEEeCCCCC-----CCccccccccc---cCCCEEEEEecCccCCCCcccceeeEeeCcccCHHHh
Confidence            589999888999999999999986     56888886543   3456899999998876666678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+... .+.+.|||++...+..+.|.|||||||++...+++|+|+||+|||.+|+..+.|++||||++|++||+++|+
T Consensus       144 ~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  222 (224)
T 3beu_A          144 RSSSSFI-LVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR  222 (224)
T ss_dssp             HHHCSSC-CCGGGEEEECCSSSSCBCCTTCTTCEEEEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHHHHT
T ss_pred             hhhcCCc-cCCCCeEEeccCCCCCcCCCCcCCCeeEEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            9877532 467899999876666789999999999998667899999999999999877789999999999999999997


Q ss_pred             h
Q psy16044        431 I  431 (436)
Q Consensus       431 ~  431 (436)
                      +
T Consensus       223 ~  223 (224)
T 3beu_A          223 T  223 (224)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=99.96  E-value=3.1e-29  Score=225.38  Aligned_cols=151  Identities=28%  Similarity=0.552  Sum_probs=132.7

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||+|++|+.++.. ++|||||.... ....++.|+++|||.+......+..|+++.+++++.+.|
T Consensus        77 ~hp~y~~~~~~~DIALl~L~~~~~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C  154 (227)
T 3fzz_A           77 PHPDYNPDDRSNDIMLLKLVRNAKRTRA-VRPLNLPRRNA-HVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVC  154 (227)
T ss_dssp             ECTTCBTTTTBTCCEEEEESSCCCCBTT-BCCCCCCCTTC-CCCTTCEEEEEESSCSSTTSCCCSBCEEEEEEBCCHHHH
T ss_pred             ECcCCCCCCCcCCEEEEEECCcCCCCCc-ccccCCCCccc-CCCCCCEEEEEECCcccCCCCCCCeeeEEEeeeecHHHh
Confidence            4999999999999999999999999988 99999998765 456789999999998876666678999999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+... ...++|||++......+.|.|||||||+++.     +|+||+|||..|+..  |++||||++|++||+++|+
T Consensus       155 ~~~~~~~-~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-----~l~Gi~S~g~~c~~~--p~vyt~V~~~~~WI~~~i~  226 (227)
T 3fzz_A          155 ESQFQSS-YNRANEICVGDSKIKGASFEEDSGGPLVCKR-----AAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMK  226 (227)
T ss_dssp             HHHHTTT-CCTTTEEEECCCSSCBCCTTTTTTCEEEETT-----EEEEEEEECCTTCSS--SEEEEEGGGTHHHHHHHHT
T ss_pred             hhhhccc-cCCCceEEEeCCCCCCcccccCCccceEEec-----CCcEEEEECCCCCCC--CeEEEEhHHhHHHHHHHHh
Confidence            9877543 3478999998766667899999999999953     699999999988754  9999999999999999987


Q ss_pred             h
Q psy16044        431 I  431 (436)
Q Consensus       431 ~  431 (436)
                      +
T Consensus       227 ~  227 (227)
T 3fzz_A          227 H  227 (227)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=99.96  E-value=3.9e-29  Score=225.10  Aligned_cols=153  Identities=29%  Similarity=0.540  Sum_probs=132.9

Q ss_pred             CCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEeeCcc
Q psy16044        270 GAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       270 ~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~  348 (436)
                      ..||.|+.....+|||||||++|+.++.. ++|||||....   ..++.|+++|||.+.... ..+..|+++.+++++.+
T Consensus        72 ~~hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picL~~~~~---~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~  147 (231)
T 2aiq_A           72 FCLNTRNDTIWDKDIMLIRLNRPVRNSAH-IAPLSLPSNPP---SVGSVCRIMGWGTITSPNATLPDVPHCANINILDYA  147 (231)
T ss_dssp             CCSSCCSSSTTTTCCEEEEESSCCCCBTT-BCCCCCCSSCC---CTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHH
T ss_pred             EECCCCCCCCCCCCEEEEEecCCCCCCCc-EEeeECCCCCC---CCCCEEEEEeCCccCCCCCccCchhhhccceecchh
Confidence            35899998889999999999999999988 99999997665   568999999999876433 34678999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccHHHHHH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~~WI~~  427 (436)
                      +|+..+..   +.+.|||++...+..+.|.|||||||+++   +  +|+||+||| ..|+..+.|++||||+.|++||++
T Consensus       148 ~C~~~~~~---~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~  219 (231)
T 2aiq_A          148 VCQAAYKG---LAATTLCAGILEGGKDTCKGDSGGPLICN---G--QFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQS  219 (231)
T ss_dssp             HHHHHCTT---CCSSEEEEECTTCSCBCCTTCTTCEEEET---T--EEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hhhhhhcC---CCcCcEEeccCCCCCcccCCcCCCcEEEC---C--EEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHH
Confidence            99988754   68899999866666799999999999994   2  599999999 789877789999999999999999


Q ss_pred             HHhhhhh
Q psy16044        428 QINIAVD  434 (436)
Q Consensus       428 ~i~~~~~  434 (436)
                      +|+.+.+
T Consensus       220 ~~~~~~~  226 (231)
T 2aiq_A          220 IISGNTD  226 (231)
T ss_dssp             HHHTCSS
T ss_pred             HHcCCCC
Confidence            9987543

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=99.96  E-value=5.9e-29  Score=222.93  Aligned_cols=150  Identities=27%  Similarity=0.494  Sum_probs=128.3

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|+..  .+|||||||++|+.++.. ++|||||.... ....++.|+++|||.+.... ..+..|+++.+++++.++
T Consensus        74 ~hp~y~~~--~~DiALl~L~~~~~~~~~-v~picL~~~~~-~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~  149 (224)
T 1pq7_A           74 VHPSYSGN--NNDLAILKLSTSIPSGGN-IGYARLAASGS-DPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRAT  149 (224)
T ss_dssp             ECTTCBTT--BTCCEEEEESSCCCCBTT-BCCCCBCCTTC-CCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHH
T ss_pred             ECCCCCCC--CCCEEEEEeCCCCcCCCc-ccceecCCccc-CCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHH
Confidence            48888765  899999999999999988 99999996443 34678999999999887554 456789999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      |+..+... .+.+.|||++...+..+.|.|||||||++.  ++  +|+||+|||.+|+..+.|++||||+.|++||+++|
T Consensus       150 C~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~g--~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          150 CRAQYGTS-AITNQMFCAGVSSGGKDSCQGDSGGPIVDS--SN--TLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             HHHHHCTT-TSCTTEEEECCTTCCCBCCTTCTTCEEECT--TC--CEEEEEEECSSSSCTTCCEEEEETTTSHHHHHHHC
T ss_pred             hhHhhcCC-CCCCCeEEeecCCCCCCCCcCCCCcceECc--CC--eEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHhhC
Confidence            99887522 468999999876666799999999999984  33  69999999999988778999999999999999875

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=99.96  E-value=2e-29  Score=244.41  Aligned_cols=157  Identities=29%  Similarity=0.504  Sum_probs=133.7

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCC--CCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADK--RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~--~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+..+..||||||+|++|+.++.. |+|||||....  .....+..|+++|||.+.... .+..|+++.+++++.+
T Consensus       211 ~Hp~y~~~~~~nDIALL~L~~~v~~~~~-V~PICLp~~~~~~~~~~~~~~~~v~GWG~t~~~~-~s~~L~~~~v~iv~~~  288 (408)
T 2xxl_A          211 IHEKYDARHIMHDIALLKLNRSVPFQKH-IKPICLPITDELKEKAEQISTYFVTGWGTTENGS-SSDVLLQANVPLQPRS  288 (408)
T ss_dssp             ECTTCBTTTTBSCCEEEEESSCCCCBTT-BCCCBCCCSHHHHHHTTTCSEEEEEECCCBTTBC-SCSBCEEEEEEEECHH
T ss_pred             eCCCCCccccccceEEEEECCccccccC-ccccCCCCcccccccccCCCEEEEEEeCcCCCCC-CCchheEeeeeecCHH
Confidence            4999998899999999999999999988 99999997642  113568899999999887544 5788999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEe-----cCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-----KDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYL  422 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-----~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~  422 (436)
                      +|++.+...  +..+||||+... +++.|.|||||||++..     .+++|+|+||+||| .+|+..+.|+|||||+.|+
T Consensus       289 ~C~~~~~~~--~~~~~iCAg~~~-g~d~C~GDSGGPL~~~~~~~~~~~~~~~l~GIvS~G~~~Cg~~~~PgVYTrVs~y~  365 (408)
T 2xxl_A          289 ACSQAYRRA--VPLSQLCVGGGD-LQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYV  365 (408)
T ss_dssp             HHHHHHTSC--CCTTEEEECCSC-SSSGGGSCTTCEEEEEECCTTCSSCEEEEEEEEEECCCCTTSCCCCEEEEEGGGGH
T ss_pred             HHHHHhccc--CCCceEeecCCC-CCccCCCcccChhhcCccceEEECCEEEEEEEEEECCCCCCCCCCCeEEEEHHHHH
Confidence            999988653  456999998754 46999999999994432     35799999999999 7898878899999999999


Q ss_pred             HHHHHHHhhh
Q psy16044        423 PWIRKQINIA  432 (436)
Q Consensus       423 ~WI~~~i~~~  432 (436)
                      +||+++|+..
T Consensus       366 ~WI~~~i~~~  375 (408)
T 2xxl_A          366 QWITDTMASN  375 (408)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999999753

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=99.96  E-value=6.5e-29  Score=222.58  Aligned_cols=148  Identities=32%  Similarity=0.557  Sum_probs=127.2

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||||++|+.++.. ++|||||.... ....++.|.++|||.+. ....+..|+++.+++++.++|
T Consensus        76 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~i~~~~~C  152 (224)
T 1cgh_A           76 RHPQYNQRTIQNDIMLLQLSRRVRRNRN-VNPVALPRAQE-GLRPGTLCTVAGWGRVS-MRRGTDTLREVQLRVQRDRQC  152 (224)
T ss_dssp             ECTTCBTTTTBSCCEEEEESSCCCCBTT-BCCCBCCCTTC-CCCTTCEEEEEESCCSS-SSCCCSBCEEEEEEBCCHHHH
T ss_pred             cCCCCCCCCCcCCEEEEEECCCCcCCCc-eEeeECCCCCC-CCCCCCEEEEEECCcCC-CCCCCCcceEEEEEeeCHHHH
Confidence            4999998889999999999999999987 99999997765 45678999999999887 344577899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+..  ...+.|||++...+..+.|.|||||||+++   +  +|+||+|||. |.. ..|++||||+.|++||+++|+
T Consensus       153 ~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~-~~~-~~p~vyt~V~~~~~WI~~~~~  223 (224)
T 1cgh_A          153 LRIFGS--YDPRRQICVGDRRERKAAFKGDSGGPLLCN---N--VAHGIVSYGK-SSG-VPPEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             HHHCTT--CCTTTEEEECCTTSCCBCCTTCTTCEEEET---T--EEEEEEEECC-TTC-CSCEEEEEGGGGHHHHHHHHH
T ss_pred             HHHhCc--CCCcceEeeccCCCCCeEeeCCCccceEEc---c--EEEEEEEEEC-CCC-CCCeEEEEHHHhHHHHHHHhh
Confidence            988743  345669999876656789999999999994   2  6999999998 433 459999999999999999986

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=99.96  E-value=2.7e-29  Score=225.24  Aligned_cols=148  Identities=34%  Similarity=0.674  Sum_probs=126.9

Q ss_pred             CCCcc-cc--cccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCC-CCCCccccceEEEEEeeC
Q psy16044        271 AWPWQ-NL--ITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK-PKGDLVSKLRQIRVPLHN  346 (436)
Q Consensus       271 ~~p~~-~~--~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~-~~~~~~~~l~~~~~~~~~  346 (436)
                      .||.| +.  ....+|||||||++|+.++.. ++|||||....   ..++.|+++|||.+. .....+..|+++.+++++
T Consensus        73 ~Hp~y~~~~~~~~~~DIALl~L~~~~~~~~~-v~pi~L~~~~~---~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~  148 (225)
T 1npm_A           73 QHPCYNNSNPEDHSHDIMLIRLQNSANLGDK-VKPVQLANLCP---KVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYS  148 (225)
T ss_dssp             ECTTCCSSCTTCCTTCCEEEEESSCCCCSSS-SCCCEECSSCC---CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECC
T ss_pred             ECCCCCCCCccCccccEEEEeeCCcccCCCc-eeceECCCCCC---CCCCEEEEEeCCcccCCCCCCCccceEeEEeeec
Confidence            48988 54  677899999999999999987 99999997643   578999999999874 334457889999999999


Q ss_pred             ccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccHHHH
Q psy16044        347 ISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       347 ~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~~WI  425 (436)
                      .++|+..+..  .++++|||++... +.+.|.|||||||+++   +  +|+||+||| ..|+..+.|++||||++|++||
T Consensus       149 ~~~C~~~~~~--~~~~~~~Ca~~~~-~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI  220 (225)
T 1npm_A          149 QNKCERAYPG--KITEGMVCAGSSN-GADTCQGDSGGPLVCD---G--MLQGITSWGSDPCGKPEKPGVYTKICRYTTWI  220 (225)
T ss_dssp             HHHHHHHSTT--TCCTTEEEEECTT-CCBCCTTCTTCEEEET---T--EEEEEEEECCSSSCBTTBCEEEEEHHHHHHHH
T ss_pred             HHHhhHHhCC--CCCCCEEeecCCC-CCeecCCCCCchheEC---C--EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHH
Confidence            9999998865  4689999998654 4689999999999984   2  599999999 5798767899999999999999


Q ss_pred             HHHHh
Q psy16044        426 RKQIN  430 (436)
Q Consensus       426 ~~~i~  430 (436)
                      +++|+
T Consensus       221 ~~~~~  225 (225)
T 1npm_A          221 KKTMD  225 (225)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99874

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=99.96  E-value=7.2e-29  Score=224.08  Aligned_cols=153  Identities=29%  Similarity=0.446  Sum_probs=133.2

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|+.....||||||+|++|+.++.. ++|||||....   ..+..|+++|||.+.... ..+..|+.+.+++++.+.
T Consensus        74 ~h~~~~~~~~~~DIALl~L~~~v~~~~~-v~pi~l~~~~~---~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~  149 (234)
T 3s69_A           74 CPNKKNDEVLDKDIMLIKLDSRVSNSEH-IVPLSLPSSPP---SVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAV  149 (234)
T ss_dssp             CTTCCTTCTTSSCCEEEEESSCCCCBTT-BCCCCCCSSCC---CTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHH
T ss_pred             CCCccCCCCCcccEEEEeeCCcCCCCCc-ceeeecCCCCC---CCCCEEEEEECCCCCCCCcCcccccceeEEeecCHHH
Confidence            4899998889999999999999999988 99999998765   458999999999876543 456789999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      |+..+... .+.++|||++...+..+.|.|||||||+++.     .|+||+|||.. |+..+.|++||||+.|++||+++
T Consensus       150 C~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~  223 (234)
T 3s69_A          150 CQAGYPEL-LTEYRTLCAGILEGGKDTCGGDSGGPLICNG-----QFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSI  223 (234)
T ss_dssp             HHHHCTTC-CTTSCEEEEECTTCSCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred             Hhhhcccc-cCCcceEeccCCCCCCccCCCCCccceEEcC-----EEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHH
Confidence            99987642 4678999998776677999999999999953     39999999976 88777899999999999999999


Q ss_pred             Hhhhh
Q psy16044        429 INIAV  433 (436)
Q Consensus       429 i~~~~  433 (436)
                      |+.+.
T Consensus       224 i~~~~  228 (234)
T 3s69_A          224 IAGNT  228 (234)
T ss_dssp             HHTCT
T ss_pred             hcCCc
Confidence            98654

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=99.96  E-value=4.3e-29  Score=224.53  Aligned_cols=151  Identities=27%  Similarity=0.533  Sum_probs=130.4

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....+|||||+|++|+.++.. ++|||||.... ....++.|.++|||.+......+..|+++.+++++.++|
T Consensus        77 ~hp~y~~~~~~~DIAll~L~~~~~~~~~-v~pi~l~~~~~-~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C  154 (228)
T 2xw9_A           77 PHPDSQPDTIDHDLLLLQLSEKATLGPA-VRPLPWQRVDR-DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATC  154 (228)
T ss_dssp             ECTTCCTTCCTTCCEEEEESSCCCCBTT-BCCCCBCCSCC-CCCTTC-CEEEESSCCSTTCCCCSBCEEEECCEECHHHH
T ss_pred             eCCCCCCCCCCCcEEEEEeCCCcccCCC-eeecccCCccc-CCCCCCEEEEEEecccCCCCCCCchheEEEEEEcChhHh
Confidence            4899998889999999999999999887 99999998654 456788999999998876656678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      ++.+.....+.+.|||++.  ...+.|.|||||||+++   +  +|+||+||+. .|+..+.|++||||++|++||+++|
T Consensus       155 ~~~~~~~~~~~~~~~Ca~~--~~~~~C~GDsGgPL~~~---~--~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i  227 (228)
T 2xw9_A          155 NRRTHHDGAITERLMCAES--NRRDSCKGDAGGPLVCG---G--VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL  227 (228)
T ss_dssp             TSTTTTTTCCCTTEEEECC--SSCBCCTTCTTCEEEET---T--EEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHH
T ss_pred             cCccccCCcccCCEEecCC--CCCccCCCCCcccEEEC---C--EEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHh
Confidence            9887643357899999975  44689999999999994   2  6999999997 7987778999999999999999987


Q ss_pred             h
Q psy16044        430 N  430 (436)
Q Consensus       430 ~  430 (436)
                      +
T Consensus       228 ~  228 (228)
T 2xw9_A          228 A  228 (228)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.7e-29  Score=234.36  Aligned_cols=154  Identities=19%  Similarity=0.270  Sum_probs=126.0

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCC--CCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADK--RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~--~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+..+..||||||||++|+.++.. |+|||||....  ..+..+..++++|||.  .....+..|+++.+++++.+
T Consensus       125 ~Hp~y~~~~~~nDIALl~L~~pv~~~~~-v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~~~~~  201 (283)
T 3f1s_B          125 VHMRYDADAGENDLSLLELEWPIQCPGA-GLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGE  201 (283)
T ss_dssp             ECTTCBTTTTBTCCEEEEESSCCCTTTT-CCCCBCCCHHHHHHTTTTTSCEEEEECBC--C-------CEEEEEEEECHH
T ss_pred             ECCCCCCCCCCCCEEEEEeCCcccCCCC-EEeEECCCCccccccccCCCEEEEEECCC--CCCCCCceeeEEEEeEeCHH
Confidence            5899999899999999999999999998 99999997652  2346789999999998  33455788999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      +|++.+..  .++++|||++...   ..|.|||||||++. .+++|+|+||+||+. |+..+.|+|||||+.|++||+++
T Consensus       202 ~C~~~~~~--~~~~~~~Ca~~~~---~~~~gDSGgPlv~~-~~~~~~l~GIvS~g~-c~~~~~p~vyt~V~~y~~WI~~~  274 (283)
T 3f1s_B          202 ECGQVLNV--TVTTRTYCERSSV---AAMHWMDGSVVTRE-HRGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQI  274 (283)
T ss_dssp             HHHHHHTS--CCCTTEEEEECSS---CGGGBCTTCEEEEE-CSSCEEEEEEECCCS-GGGCSSEEEEEEGGGGHHHHHHH
T ss_pred             HHhhhhcC--CCCCCeEcccCCC---CCCCCCCCCcEEEE-ECCEEEEEEEEEeCC-CCCCCcceEEEEhHHhHHHHHHH
Confidence            99998865  5789999997543   35678999999998 478999999999986 66667899999999999999999


Q ss_pred             Hhhhhh
Q psy16044        429 INIAVD  434 (436)
Q Consensus       429 i~~~~~  434 (436)
                      |++..+
T Consensus       275 ~~~~~~  280 (283)
T 3f1s_B          275 MNAHHH  280 (283)
T ss_dssp             HTC---
T ss_pred             hhcchh
Confidence            986654

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=99.96  E-value=9.1e-29  Score=222.12  Aligned_cols=150  Identities=31%  Similarity=0.477  Sum_probs=127.5

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||||++|+.++.. ++|||||.... ....+..|.++|||.+......+..|+++.+++++.++|
T Consensus        77 ~hp~y~~~~~~~DIALl~L~~~~~~~~~-v~pi~l~~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  154 (226)
T 4ag1_A           77 RHPKYNTSTLHHDIMLLKLKEKASLTLA-VGTLPFPSQFN-FVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQAC  154 (226)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCCSS-SCCCCCC------CCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECGGGG
T ss_pred             eCCCCCCCCCcCcEEEEEECCCCccCCc-eeccccCCccc-CCCCCCEEEEEECCCCCCCCCCCCEeEEEEEEEcChHHc
Confidence            4999999899999999999999999988 99999997655 456799999999999876666678999999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +... .  ...+.|||++...+..+.|.|||||||++..     +|+||+|||..|+..  |++||||+.|++||+++|+
T Consensus       155 ~~~~-~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~~--p~vyt~v~~~~~WI~~~i~  224 (226)
T 4ag1_A          155 SHFR-D--FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG-----VAQGIVSYGRSDAKP--PAVFTRISHYRPWINQILQ  224 (226)
T ss_dssp             TTST-T--CCTTTEEEESCTTSCCBCCTTCTTCEEEETT-----EEEEEEEECBTTCCS--CEEEEEHHHHHHHHHHHHH
T ss_pred             cccc-C--cCccceEeeccCCCCCcCccCCCCCceEEcC-----EEEEEEEECCCCCCC--CCEEEEhHHHHHHHHHHHh
Confidence            8432 2  3478999998766667999999999999942     699999999988764  9999999999999999997


Q ss_pred             hh
Q psy16044        431 IA  432 (436)
Q Consensus       431 ~~  432 (436)
                      .+
T Consensus       225 ~n  226 (226)
T 4ag1_A          225 AN  226 (226)
T ss_dssp             HC
T ss_pred             cC
Confidence            53

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=99.96  E-value=8.2e-29  Score=223.87  Aligned_cols=154  Identities=20%  Similarity=0.337  Sum_probs=132.5

Q ss_pred             CCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEeeCcccc
Q psy16044        272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       272 ~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~~C  350 (436)
                      | .|+.....||||||+|++|+.++...++|||||.... ....++.|+++|||.+.... ..+..|+++.+++++.++|
T Consensus        75 h-~y~~~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C  152 (235)
T 3h7t_A           75 V-RYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLY-DPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSC  152 (235)
T ss_dssp             C-SCBTTTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTC-CCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHH
T ss_pred             e-ecCCCCCCCCeEEEEeccccccCCccccceecCcccc-CCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHH
Confidence            5 6677788899999999999999983399999998764 45789999999999987655 5678999999999999999


Q ss_pred             ccccCCC---ccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHH
Q psy16044        351 RDKYGDS---VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       351 ~~~~~~~---~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~  427 (436)
                      +..+...   ..+.++|||++...+..+.|.|||||||++++   +  |+||+||+.+|.. +.|++||||++|++||++
T Consensus       153 ~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~---~--l~Gi~S~g~~C~~-~~p~vyt~v~~~~~WI~~  226 (235)
T 3h7t_A          153 EEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQNG---T--LVGVASYISSMPS-EFPSVFLRVGYYVLDIKD  226 (235)
T ss_dssp             HHHHHTTTCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEETT---E--EEEEECCCTTCCT-TSCEEEEEGGGGHHHHHH
T ss_pred             HHHhhhcccCccccCCeEecCCCCCCCccccCCCCCceeeCC---e--EEEEEEecCCCCC-CCCceEEEHHHHHHHHHH
Confidence            9887542   23789999998877667999999999999843   2  9999999999987 789999999999999999


Q ss_pred             HHhhhh
Q psy16044        428 QINIAV  433 (436)
Q Consensus       428 ~i~~~~  433 (436)
                      +|+...
T Consensus       227 ~i~~~~  232 (235)
T 3h7t_A          227 IISGKV  232 (235)
T ss_dssp             HHTTCS
T ss_pred             HHhCCc
Confidence            998654

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=99.96  E-value=4.7e-29  Score=254.76  Aligned_cols=157  Identities=32%  Similarity=0.632  Sum_probs=121.9

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....||||||+|++|+.++.. |+|||||.... ....++.|+++|||.+......+..|+++.+++++.++|
T Consensus       468 ~Hp~y~~~~~~nDIALlkL~~pv~~~~~-v~PicLp~~~~-~~~~~~~~~v~GWG~~~~~~~~s~~L~~~~v~i~~~~~C  545 (625)
T 2f83_A          468 IHDQYKMAESGYDIALLKLETTVNYTDS-QRPICLPSKGD-RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC  545 (625)
T ss_dssp             ECTTCCBTTTBCCCEEEEESSCCCCBTT-BCCCBCCCGGG-TTCCCCCEEECBCC------CCCSBCBCCEECCCCHHHH
T ss_pred             ECCccCcCCccccEEEEEECCcccCCCc-eeeeEcCCccC-CccCCCEEEEEEecCCCCCCcCCcccEEEEEEEcCHHHH
Confidence            4999998889999999999999999988 99999997654 345678999999998876555678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+... .+++.|||++...++.+.|.|||||||++.. +++|+|+||+|||.+|+..+.|+|||||+.|++||+++|+
T Consensus       546 ~~~~~~~-~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~-~~~~~lvGIvS~G~~C~~~~~P~vyT~V~~y~~WI~~~~~  623 (625)
T 2f83_A          546 QKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  623 (625)
T ss_dssp             HTTCTTS-CCCTTBCCC----------CCCTTCEEEEEE-TTEEEEEEEEEECCC----CCCCEEEEGGGGHHHHHHTC-
T ss_pred             HHHhccC-CCCCCeEEeecCCCCCcCCCCCcccceEEEE-CCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            9887542 4789999998766667899999999999985 7899999999999999877889999999999999999886


Q ss_pred             h
Q psy16044        431 I  431 (436)
Q Consensus       431 ~  431 (436)
                      .
T Consensus       624 ~  624 (625)
T 2f83_A          624 A  624 (625)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=99.95  E-value=7.4e-29  Score=241.73  Aligned_cols=156  Identities=26%  Similarity=0.462  Sum_probs=124.1

Q ss_pred             CCCccccc---ccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCc
Q psy16044        271 AWPWQNLI---TSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI  347 (436)
Q Consensus       271 ~~p~~~~~---~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~  347 (436)
                      .||.|+..   ...||||||||++|+.++.. |+|||||.... ....+..++++|||.+..  ..+..|+++.+++++.
T Consensus       236 ~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~-v~picLp~~~~-~~~~~~~~~v~GwG~~~~--~~~~~L~~~~~~i~~~  311 (399)
T 1gpz_A          236 VHPDYRQDESYNFEGDIALLELENSVTLGPN-LLPICLPDNDT-FYDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANP  311 (399)
T ss_dssp             ECSSCCSSSSSCCTTCCEEEEESSCCCCBTT-BCCCBCCCSGG-GGCTTCEEEEEECC-------CCSBCEEEEEEEECH
T ss_pred             ECCCCCcCCCCCCCCcEEEEEECCcCcCCCc-eeeeecCCCcc-ccCCCCEEEEEccCCCCC--ccCccceEEEEEEcCH
Confidence            48999753   56799999999999999988 99999997654 334688999999998763  3467899999999999


Q ss_pred             cccccccCCC---ccCCCCceecccCCCCCCCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHH
Q psy16044        348 SVCRDKYGDS---VELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       348 ~~C~~~~~~~---~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~  423 (436)
                      ++|++.+...   ..++++||||+...+..+.|+|||||||++.. .+++|+|+||+|||.+|+.  .|++||||+.|++
T Consensus       312 ~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~~l~GivS~g~~C~~--~~~vyt~V~~y~~  389 (399)
T 1gpz_A          312 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVD  389 (399)
T ss_dssp             HHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEEEEEEEECCCTTTTT--TEEEEEEGGGGHH
T ss_pred             HHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeEEEEEEEEeCCCcCC--CCeEEEEhHHhHH
Confidence            9999876431   23688999998765557899999999999976 4679999999999999975  3899999999999


Q ss_pred             HHHHHHhhh
Q psy16044        424 WIRKQINIA  432 (436)
Q Consensus       424 WI~~~i~~~  432 (436)
                      ||+++|+++
T Consensus       390 WI~~~~~~~  398 (399)
T 1gpz_A          390 WIKKEMEEE  398 (399)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHHhccC
Confidence            999999764

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=99.95  E-value=2.1e-28  Score=219.49  Aligned_cols=147  Identities=34%  Similarity=0.667  Sum_probs=127.5

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|+.....||||||||++|+.++.. ++|||||....   ..++.|.++|||.+.... ..+..|+++.+++++.++
T Consensus        75 ~hp~y~~~~~~~DiALl~L~~~~~~~~~-v~picL~~~~~---~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~  150 (226)
T 1azz_A           75 VHENYNSFVISNDIAVIRLPVPVTLTAA-IATVGLPSTDV---GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNAD  150 (226)
T ss_dssp             ECTTCBTTTTBSCCEEEECSSCCCCCSS-SCCCBCCSSCC---CTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHH
T ss_pred             ECCCCCCCCCCCceEEEEECCccccCCC-cccccCCCCCC---CCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhH
Confidence            5999998889999999999999999988 99999997664   678999999999876533 457789999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcccHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~~~~WI~~  427 (436)
                      |+..+.   .+++.|||++. .+..+.|.|||||||+++   +  +|+||+|||.  +|.. +.|++||||+.|++||++
T Consensus       151 C~~~~~---~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~~~~C~~-~~p~vyt~V~~~~~WI~~  220 (226)
T 1azz_A          151 CDAVYG---IVTDGNICIDS-TGGKGTCNGDSGGPLNYN---G--LTYGITSFGAAAGCEA-GYPDAFTRVTYFLDWIQT  220 (226)
T ss_dssp             HHHHHS---CCCTTEEEECC-TTTCBCCTTCTTCEEEET---T--EEEEEEEEEETTCTTS-CCCEEEEESGGGHHHHHH
T ss_pred             hhhhhC---cCCCceEeecC-CCCCccCCCCCCcceEEC---C--EEEEEEEEECCCCCCC-CCCCEEEEHHHHHHHHHH
Confidence            998875   36899999976 344689999999999963   3  7999999997  5654 679999999999999999


Q ss_pred             HHhh
Q psy16044        428 QINI  431 (436)
Q Consensus       428 ~i~~  431 (436)
                      +|+.
T Consensus       221 ~~~~  224 (226)
T 1azz_A          221 QTGI  224 (226)
T ss_dssp             HHCC
T ss_pred             HhCC
Confidence            9875

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=99.95  E-value=1.8e-28  Score=219.99  Aligned_cols=148  Identities=30%  Similarity=0.516  Sum_probs=129.1

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+..+..||||||||++|+.++.. ++|||||.... ....+..|+++|||.+......+..|+++.+++++.++|
T Consensus        77 ~hp~y~~~~~~~DIALl~L~~~~~~~~~-v~pi~l~~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C  154 (224)
T 3rp2_A           77 IHESYNSVPNLHDIMLLKLEKKVELTPA-VNVVPLPSPSD-FIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKAC  154 (224)
T ss_dssp             ECTTCCSSSCCSCCEEEEESSCCCCBTT-BCCCCCCCTTC-CCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGT
T ss_pred             ECCCccCCCCCccEEEEEcCCCcccCCc-ccceecCCccc-CCCCCCEEEEEeCCCCCCCCCCCceeeEeeeeecChHHh
Confidence            5899999889999999999999999988 99999997765 456789999999998876555677899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +.. ..  ...+.+||++......+.|.|||||||++..     +|+||+|||..|+..  |++||||+.|++||+++|+
T Consensus       155 ~~~-~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~~--p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          155 VDY-RY--YEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG-----VAHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             TTT-TC--CCTTTEEEECCTTSCCBCCTTTTTCEEEETT-----EEEEEEEECCTTCCS--CEEEEEHHHHHHHHHHHHC
T ss_pred             ccc-cc--cCcCCEEEecCCCCCCeeccCCCCCeEEEcc-----eeeEEEEECCCCCCC--CcEEEEHHHhHHHHHHHhC
Confidence            873 22  3578899998776667999999999999942     699999999988764  9999999999999999874

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=99.95  E-value=2.5e-28  Score=219.65  Aligned_cols=148  Identities=23%  Similarity=0.378  Sum_probs=129.0

Q ss_pred             cccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccc
Q psy16044        274 WQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK  353 (436)
Q Consensus       274 ~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~  353 (436)
                      .|+..+..||||||+|++|+.++...++|||||.... ....++.|.++|||.+......+..|+++.+++++.++|+..
T Consensus        80 ~y~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~  158 (228)
T 3h7o_A           80 FYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEF-RPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTK  158 (228)
T ss_dssp             SCBTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTC-CCCTTCEEEEEECCCSSCSCGGGGBCEEEEEEEECHHHHHHH
T ss_pred             ccCCCCccCCEEEEEECCcccccccccccccCCcccc-CCCCCCeeEEEEEecCCCCCCcccccccceeEEEcHHHHHHH
Confidence            6777788999999999999999983399999998764 457889999999999877666678899999999999999998


Q ss_pred             cCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHhh
Q psy16044        354 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINI  431 (436)
Q Consensus       354 ~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~~  431 (436)
                      +... .+.++|||++...  .+.|.|||||||+++.     .|+||+||+..|.. +.|++||||+.|++||+++|++
T Consensus       159 ~~~~-~~~~~~~Ca~~~~--~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~-~~p~vyt~v~~~~~WI~~~i~~  227 (228)
T 3h7o_A          159 YGPI-FLSLQVFCAQKVG--VSLESGDAGDPTVQQD-----TLVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDIIKK  227 (228)
T ss_dssp             HTTS-CCCSSEEEEECTT--CCCCGGGTTCEEEETT-----EEEEEECCCTTCCT-TCCEEEEEGGGTHHHHHHHHTT
T ss_pred             hcCc-cCCceEEecCCCC--CcCCCCCCCCcceecC-----eEEEEEeecCcCCC-CCCcEEEEHHHHHHHHHHHhhc
Confidence            8652 4689999997654  6899999999999843     39999999998887 7799999999999999999975

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=99.95  E-value=1.6e-27  Score=214.55  Aligned_cols=151  Identities=25%  Similarity=0.455  Sum_probs=127.0

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCC-CCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|+.....||||||+|+ |+.++.. ++|||||..... ....+..|.++|||.+...   ...|+++.+++++.++
T Consensus        76 ~hp~y~~~~~~~DiALl~L~-~~~~~~~-v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~---~~~l~~~~~~~~~~~~  150 (230)
T 2hlc_A           76 SHSMFNPDTYLNDVALIKIP-HVEYTDN-IQPIRLPSGEELNNKFENIWATVSGWGQSNTD---TVILQYTYNLVIDNDR  150 (230)
T ss_dssp             ECTTCBTTTTBTCCEEEECS-CCCCCSS-CCCCBCCCGGGGGCCCTTCEEEEEESSCCSSC---CCBCEEEEEEEECHHH
T ss_pred             ECCCCCCCCccccEEEEEec-CCCcCCc-EeeeEcCCccccccccCCcEEEEEeeeecCCC---CceeEEEEEEEeCHHH
Confidence            49999998999999999999 9999888 999999976542 2357889999999987543   2679999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcccHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~~~~WI~~  427 (436)
                      |++.+... .+.+.|||++.. .+.+.|.|||||||++..   +++|+||+||+.  +| ..+.|.+||||++|++||++
T Consensus       151 C~~~~~~~-~~~~~~~Ca~~~-~~~~~C~GDSGgPl~~~~---~~~l~Gi~S~g~~~~C-~~~~p~vyt~V~~~~~WI~~  224 (230)
T 2hlc_A          151 CAQEYPPG-IIVESTICGDTS-DGKSPCFGDSGGPFVLSD---KNLLIGVVSFVSGAGC-ESGKPVGFSRVTSYMDWIQQ  224 (230)
T ss_dssp             HHTTSCTT-SSCTTEEEECCT-TSCBCCTTCTTCEEEEGG---GTEEEEEEEECCTTCT-TSCCCEEEEEGGGGHHHHHH
T ss_pred             hhhhhCCC-cccCCeEEecCC-CCCCcCCCCCCCeeEECc---CCEEEEEEEEeCCCCC-CCCCCCEEEEhHHhHHHHHH
Confidence            99887542 468899999764 346899999999999853   348999999987  67 44679999999999999999


Q ss_pred             HHhhh
Q psy16044        428 QINIA  432 (436)
Q Consensus       428 ~i~~~  432 (436)
                      +++..
T Consensus       225 ~~~~~  229 (230)
T 2hlc_A          225 NTGIK  229 (230)
T ss_dssp             HHCCC
T ss_pred             hhCcC
Confidence            99764

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.95  E-value=9.9e-28  Score=226.38  Aligned_cols=150  Identities=20%  Similarity=0.279  Sum_probs=129.4

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCC--CCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADK--RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~--~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.|+..+..||||||||++|+.++.. |+|||||....  ..+..++.++++|||.  .....+..|+++.+++++.+
T Consensus       166 ~Hp~y~~~~~~~DIALl~L~~pv~~~~~-v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~~~~~  242 (317)
T 3h5c_B          166 VHMRYDADAGENDLSLLELEWPIQCPGA-GLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGE  242 (317)
T ss_dssp             ECTTCBTTTTBSCCEEEEESSCCCTTTS-CCCCBCCCHHHHHHTTTTTSCEEEEBCCT--TCCSSSCCCBCCEEEEECHH
T ss_pred             ECCCCCCCCCCCCeEEEEeCCcccCCCC-ccceeCCCcccccccccCCCeEEEEecCC--CCCCCCccceEEEEEEECHH
Confidence            5899999899999999999999999988 99999997642  2346789999999998  33455788999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      +|++.+..  .++++|||++...   ..|.|||||||++.. +++|+|+||+||+. |+..+.|++||||+.|++||+++
T Consensus       243 ~C~~~~~~--~~~~~~~Ca~~~~---~~~~gDsGgPl~~~~-~~~~~l~Gi~S~g~-~~~~~~p~vyt~V~~y~~WI~~~  315 (317)
T 3h5c_B          243 ECGQVLNV--TVTTRTYCERSSV---AAMHWMDGSVVTREH-RGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQI  315 (317)
T ss_dssp             HHHHHHTC--CCCTTEEEEECSC---CCCCCCTTCEEEEEE-TTEEEEEEEECCCC-SSCCTTEEEEEEGGGCHHHHHHH
T ss_pred             HHhhhhcC--cCCCceeECCCCC---CCcCCCCCCCEEEec-CCEEEEEEEEEECC-CCCCCcceEEEEhHHhHHHHHHH
Confidence            99998865  5789999997543   468899999999984 78999999999975 66667899999999999999998


Q ss_pred             Hh
Q psy16044        429 IN  430 (436)
Q Consensus       429 i~  430 (436)
                      |+
T Consensus       316 i~  317 (317)
T 3h5c_B          316 MN  317 (317)
T ss_dssp             HC
T ss_pred             hC
Confidence            74

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=99.95  E-value=3.4e-27  Score=210.53  Aligned_cols=139  Identities=28%  Similarity=0.586  Sum_probs=120.8

Q ss_pred             CCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccc
Q psy16044        272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCR  351 (436)
Q Consensus       272 ~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~  351 (436)
                      | .|+.....||||||||++|+.++.. ++|||||.... ....+..|.++|||.+......+..|+++.++++ .+.|+
T Consensus        78 h-~y~~~~~~~DIALl~L~~~~~~~~~-v~picL~~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~-~~~C~  153 (218)
T 2z7f_E           78 N-GYDPVNLLNDIVILQLNGSATINAN-VQVAQLPAQGR-RLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCR  153 (218)
T ss_dssp             S-CCBTTTTBSCCEEEEESSCCCCSSS-CCCCCCCCTTC-CCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEE-CTTCC
T ss_pred             c-CCCCCCCCCCEEEEEECCcCcCCCc-eeccCcCCCCC-CCCCCCEEEEEEeCCCCCCCCccchheEeeeEEe-hhHcC
Confidence            5 7777778899999999999999988 99999997765 3467899999999998766666788999999999 89997


Q ss_pred             cccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEe--cCCCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        352 DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF--GSGCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       352 ~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~--~~~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      ..          |||++...+..+.|.|||||||++++     +|+||+||  +. |+....|++||||+.|++||+++|
T Consensus       154 ~~----------~~Ca~~~~~~~~~C~GDSGgPl~~~~-----~l~Gi~S~~~g~-C~~~~~p~vyt~V~~~~~WI~~~~  217 (218)
T 2z7f_E          154 RS----------NVCTLVRGRQAGVCFGDSGSPLVCNG-----LIHGIASFVRGG-CASGLYPDAFAPVAQFVNWIDSII  217 (218)
T ss_dssp             TT----------SEEEECTTSCCBCCTTCTTCEEEETT-----EEEEEEEEESSS-TTCSSSCEEEEEGGGGHHHHHHHH
T ss_pred             cc----------eeeeccCCCCCeeCCCcCCCceEEcc-----EEEEEEEeCCcc-CCCCCCCeEEEEHHHhHHHHHHHh
Confidence            64          89998766567899999999999842     69999999  65 887677999999999999999987


Q ss_pred             h
Q psy16044        430 N  430 (436)
Q Consensus       430 ~  430 (436)
                      +
T Consensus       218 ~  218 (218)
T 2z7f_E          218 Q  218 (218)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=99.94  E-value=4.4e-27  Score=210.92  Aligned_cols=141  Identities=28%  Similarity=0.562  Sum_probs=122.9

Q ss_pred             CCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccc
Q psy16044        272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCR  351 (436)
Q Consensus       272 ~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~  351 (436)
                      | .|+.....||||||+|++|+.++.. ++|||||.... ....+..|.++|||.+......+..|+++.+++++.++|+
T Consensus        79 h-~y~~~~~~~DIALl~L~~~~~~~~~-v~pi~L~~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~  155 (225)
T 1a7s_A           79 N-GYDPQQNLNDLMLLQLDREANLTSS-VTILPLPLQNA-TVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR  155 (225)
T ss_dssp             S-SCBTTTTBSCCEEEEESSCCCCBTT-BCCCCCCCTTC-CCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSC
T ss_pred             c-cccCCCCcCCEEEEEcCCcccCCCc-eeEEEcCCCcC-CCCCCCEEEEEeCCcCCCCCCcccccceeeeEECCHHHhc
Confidence            5 6777778899999999999999987 99999997765 4467899999999998766666789999999999999997


Q ss_pred             cccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEec-CCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        352 DKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG-SGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       352 ~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~-~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      .          +|+|++...+..+.|.|||||||++.   +  +|+||+||| ..|+..  |++||||+.|++||+++|+
T Consensus       156 ~----------~~~Ca~~~~~~~~~C~GDSGgPl~~~---g--~l~Gi~S~g~~~C~~~--p~vyt~V~~~~~WI~~~~~  218 (225)
T 1a7s_A          156 P----------NNVCTGVLTRRGGICNGDGGTPLVCE---G--LAHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVLN  218 (225)
T ss_dssp             T----------TEEEEECSSSSCBCCTTCTTCEEEET---T--EEEEEEEEECSSTTSS--CEEEEEGGGGHHHHHHHHH
T ss_pred             c----------CceEEeccCCCCCcccCCCcchheeC---C--EEEEEEEEccCCcCCC--CcEEEEhHHhHHHHHHHhc
Confidence            6          69999876656789999999999995   2  799999999 678764  9999999999999999997


Q ss_pred             hh
Q psy16044        431 IA  432 (436)
Q Consensus       431 ~~  432 (436)
                      ..
T Consensus       219 ~~  220 (225)
T 1a7s_A          219 NP  220 (225)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.94  E-value=3.3e-27  Score=197.84  Aligned_cols=139  Identities=32%  Similarity=0.628  Sum_probs=116.7

Q ss_pred             CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCC---CccccceeeeeeccchhhhhhhcC
Q psy16044        120 NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG---DLVSKLRQIRVPLHNISVCRDKYG  196 (436)
Q Consensus       120 ~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~---~~~~~l~~~~~~~~~~~~C~~~~~  196 (436)
                      +..||||||||++|+. ++.+++|||||....   ..+..++++|||.+...+   ..+..|+++.+++++.+.|+..+.
T Consensus         5 ~~~nDIALl~L~~~v~-~~~~v~picLp~~~~---~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~   80 (152)
T 2pka_B            5 DYSHDLMLLRLQSPAK-ITDAVKVLELPTQEP---ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAHP   80 (152)
T ss_dssp             BCTTCCEEEEESSCCC-CCSSCCCCCCCSSCC---CTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHCS
T ss_pred             CCCCCEEEEEECCCCc-CCCCEEeEECCCCCC---CCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhhc
Confidence            4579999999999999 788899999998532   358899999999988665   567889999999999999999875


Q ss_pred             CCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CCcccccccceecCCccccC
Q psy16044        197 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       197 ~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~~~y~~v~~~~~~~~~~~~  269 (436)
                      .  ...+.||||+...+..++|.|||||||++.   +  +|+||+|||...|+   .+.+|++|.+|..||.+.+.
T Consensus        81 ~--~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~---g--~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  149 (152)
T 2pka_B           81 D--KVTESMLCAGYLPGGKDTCMGDSGGPLICN---G--MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT  149 (152)
T ss_dssp             S--BCCTTEEEEECTTSSCBCCTTCTTCEEEET---T--EEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             C--CCCCCEEeeccCCCCCcccCCccccceEEC---C--EEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence            4  346799999976666899999999999985   2  59999999943464   36899999999999987653

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=99.94  E-value=2.8e-26  Score=205.11  Aligned_cols=139  Identities=35%  Similarity=0.688  Sum_probs=119.8

Q ss_pred             cccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccc
Q psy16044        274 WQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK  353 (436)
Q Consensus       274 ~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~  353 (436)
                      .|+.....+|||||+|++|+.++.. ++|||||.... ....++.|.++|||.+......+..|+++.++++ .+.|+..
T Consensus        82 ~y~~~~~~~DiALl~L~~~~~~~~~-v~picL~~~~~-~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~-~~~C~~~  158 (221)
T 1fuj_A           82 NYDAENKLNDILLIQLSSPANLSAS-VATVQLPQQDQ-PVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVV-TFFCRPH  158 (221)
T ss_dssp             CCBTTTTBCCCEEEEESSCCCCCSS-CCCCBCCCTTC-CCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEE-CTTCCTT
T ss_pred             CCCCCCCcccEEEEEeCCccccCCc-ceeeECCCCcC-CCCCCCEEEEEEeCCCCCCCCHHHHhhcccceEE-eeecCCc
Confidence            6666778899999999999999988 99999998765 4567899999999998766666788999999999 8888753


Q ss_pred             cCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        354 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       354 ~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                                |+|++...+..+.|.|||||||+++   +  +|+||+||+. +|+..+.|++||||++|++||+++|+
T Consensus       159 ----------~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          159 ----------NICTFVPRRKAGICFGDSGGPLICD---G--IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             ----------EEEEECSSSSCBCCTTCTTCEEEET---T--EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ----------eeeeccCCCCCCCCCCCCCCeeEEC---C--EEeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence                      8999876656789999999999993   2  6999999964 48877789999999999999999885

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.94  E-value=1e-26  Score=213.18  Aligned_cols=198  Identities=14%  Similarity=0.054  Sum_probs=132.5

Q ss_pred             cCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEE
Q psy16044         33 SIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERI  112 (436)
Q Consensus        33 a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i  112 (436)
                      +..++|||++.+........ ..++|+|+||+++||||||||+....   .....+.|++|..........  .+.+.++
T Consensus        12 ~~~~~~P~~~~v~l~~~~~~-g~~~CgG~lI~~~~VLTAAHCv~~~~---~~~~~i~V~~G~~~~~~~~~g--~~~~~~i   85 (268)
T 1wcz_A           12 TDTTNGHYAPVTYIQVEAPT-GTFIASGVVVGKDTLLTNKHVVDATH---GDPHALKAFPSAINQDNYPNG--GFTAEQI   85 (268)
T ss_dssp             SCTTSGGGTTEEEEEEEC-C-CEEEEEEEECSSSEEEECHHHHGGGT---TCGGGEEEEETCCBTTBCTTC--CEEEEEE
T ss_pred             cCCCCCCccEEEEEEEEcCC-CCEEEEEEEEECCEEEEChhhCCCcc---CCcceEEEEecccCcccccCC--cEEEEEE
Confidence            56688898876443321111 15899999999999999999996531   112458899997765432222  3567778


Q ss_pred             EeCCCCCCCCCceeEEEeCCCCC--CCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhh
Q psy16044        113 RVHEEFHNYHHDIALLKLSRPTS--ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  190 (436)
Q Consensus       113 ~~hp~y~~~~~DiAll~L~~~~~--~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~  190 (436)
                      +.|+.    .+|||||||++++.  .++..++|+||+..  .....+..++++|||....     ..++.....++..  
T Consensus        86 ~~~~~----~~DIALLkL~~~~~~~~~~~~v~pi~L~~~--~~~~~g~~v~v~Gwg~~~~-----~~~~~~~~g~i~~--  152 (268)
T 1wcz_A           86 TKYSG----EGDLAIVKFSPNEQNKHIGEVVKPATMSNN--AETQVNQNITVTGYPGDKP-----VATMWESKGKITY--  152 (268)
T ss_dssp             EECSS----SSCCEEEEECCCTTSCCHHHHSCCCCBCCC--SSCCTTCEEEEEECCTTSS-----TTCEEEEEEEEEE--
T ss_pred             ecCCC----CCcEEEEEecCcccccccccccceeecccc--cccCCCCEEEEEECCCCCC-----CceEEeecceEEe--
Confidence            88763    58999999999973  13456899999863  2345789999999996542     1233333332221  


Q ss_pred             hhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCCccccC
Q psy16044        191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       191 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~~~~~~  269 (436)
                                ....++|.+     .++|.|||||||++.  +  +.|+||+|||.+|+. ...|..+..+..||.+.+.
T Consensus       153 ----------~~~~~i~~~-----~~~c~GdSGGPLv~~--~--g~lvGIvS~G~~~~~-~~~~~~~~~~~~wI~~~i~  211 (268)
T 1wcz_A          153 ----------LKGEAMQYD-----LSTTGGNSGSPVFNE--K--NEVIGIHWGGVPNEF-NGAVFINENVRNFLKQNIE  211 (268)
T ss_dssp             ----------EETTEEEES-----BCCCTTCTTCEEECT--T--SCEEEEEEEEETTTE-EEEEECCHHHHHHHHHHCT
T ss_pred             ----------eCCCeEEEe-----cccCCCCccCeEEcc--C--CEEEEEEeCCccCCc-ceeEEcCHHHHHHHHHHHH
Confidence                      113577763     689999999999963  2  359999999987443 3334445667888876554

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.93  E-value=2.2e-26  Score=211.72  Aligned_cols=198  Identities=14%  Similarity=0.056  Sum_probs=131.5

Q ss_pred             cCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEE
Q psy16044         33 SIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERI  112 (436)
Q Consensus        33 a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i  112 (436)
                      +..++|||++.++....... ..++|+|+||+++||||||||+....   .....+.|++|..........  .+.+.++
T Consensus        12 ~~~~~~P~~~~v~i~~~~~~-~~~~C~G~lI~~~~VLTAAHCv~~~~---~~~~~i~V~~G~~~~~~~~~g--~~~~~~i   85 (274)
T 2o8l_A           12 TDTTNGHYAPVTYIQVEAPT-GTFIASGVVVGKDTLLTNKHVVDATH---GDPHALKAFPSAINQDNYPNG--GFTAEQI   85 (274)
T ss_dssp             SSTTSGGGTTEEEEEEEETT-EEEEEEEEEEETTEEEECHHHHHTTT---TCGGGEEEEETCCBTTBCTTC--CEEEEEE
T ss_pred             cCCCCCCcceEEEEEEEcCC-CCEEEEEEEEECCEEEEChhhCcccC---CCcceEEEEecccCcccccCc--cEEEEEE
Confidence            55678888866443211111 15899999999999999999996531   112458899997654332222  3567888


Q ss_pred             EeCCCCCCCCCceeEEEeCCCCC--CCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhh
Q psy16044        113 RVHEEFHNYHHDIALLKLSRPTS--ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  190 (436)
Q Consensus       113 ~~hp~y~~~~~DiAll~L~~~~~--~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~  190 (436)
                      +.|+.    .+|||||||++++.  .++..++|+||+..  .....+..++++|||.....     .++.....++..  
T Consensus        86 ~~~~~----~~DIALLkL~~~~~~~~~~~~v~pi~L~~~--~~~~~g~~v~v~Gwg~~~~~-----~~~~~~~g~i~~--  152 (274)
T 2o8l_A           86 TKYSG----EGDLAIVKFSPNEQNKHIGEVVKPATMSNN--AETQTNQNITVTGYPGDKPV-----ATMWESKGKITY--  152 (274)
T ss_dssp             EECSS----SSCCEEEEECCCTTSCCTTTSSCCCEECCC--TTCCTTCEEEEEECCTTSST-----TCEEEEEEEEEE--
T ss_pred             EeCCC----CCcEEEEEecCccccccccccccccccccc--ccccCCCEEEEEECCCCCCC-----ceEEecCceEEe--
Confidence            88864    58999999999973  24667999999863  23457899999999965421     122222222211  


Q ss_pred             hhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCCccccC
Q psy16044        191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       191 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~~~~~~  269 (436)
                                ....++|..     .++|.|||||||++.  +  +.|+||+|||.+|+. ...|..+..+..||.+.+.
T Consensus       153 ----------~~~~~i~~~-----~~~c~GdSGGPLv~~--~--g~lvGIvS~G~~~~~-~~~~~~~~~~~~wI~~~i~  211 (274)
T 2o8l_A          153 ----------LKGEAMQYD-----LSTTGGNSGSPVFNE--K--NEVIGIHWGGVPNEF-NGAVFINENVRNFLKQNIE  211 (274)
T ss_dssp             ----------EETTEEEES-----CCCCTTCTTCEEECT--T--SCEEEEEEEEETTTE-EEEEECCHHHHHHHHHHCT
T ss_pred             ----------cCCCeEEeC-----cccCCCCchhheecc--C--CeEEEEEeCcccCCC-CceEEecHHHHHHHHHHHh
Confidence                      112566653     689999999999963  2  359999999987543 3333345667788876554

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.93  E-value=8.1e-27  Score=212.19  Aligned_cols=179  Identities=16%  Similarity=0.141  Sum_probs=116.9

Q ss_pred             CeeeEEEEecC------CEEEecCCCcCCCCCCCCCCcceEEEeccccCCccC-----------CceEEEeeeEEEeCCC
Q psy16044         55 PHWCGAVLIHP------SWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEE-----------KSEVRIPVERIRVHEE  117 (436)
Q Consensus        55 ~~~C~GtLIs~------~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~-----------~~~~~~~v~~i~~hp~  117 (436)
                      .|+|+|+||++      +||||||||+....   .....+.|.++........           .......+..++.|+.
T Consensus        33 ~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~---~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i~h~~  109 (268)
T 1arb_A           33 TLACTGSLVNNTANDRKMYFLTAHHCGMGTA---STAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKATY  109 (268)
T ss_dssp             EEEEEEEEBCCTTCCCCCEEEEEGGGSCCSH---HHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEEEEEE
T ss_pred             ccEEeEEEEcCCCCCCCCEEEEcHHhCCCcc---CcceEEEEEeCCCCCccccccccccccccCCcceEEeccceEecCC
Confidence            68999999998      69999999986410   0123467777653321110           0111123677788883


Q ss_pred             CCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCcc--ccceeeeeeccchhhhhh--
Q psy16044        118 FHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV--SKLRQIRVPLHNISVCRD--  193 (436)
Q Consensus       118 y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~--~~l~~~~~~~~~~~~C~~--  193 (436)
                         ..||||||||++|+.                    .+..++++|||.+.......  ..++...++.++...|..  
T Consensus       110 ---~~nDIALLrL~~~v~--------------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  166 (268)
T 1arb_A          110 ---ATSDFTLLELNNAAN--------------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSF  166 (268)
T ss_dssp             ---TTTTEEEEEESSCCC--------------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCCEE
T ss_pred             ---CCCceEEEEecCCCC--------------------CCCceEEeCcCccCCCCCcceeeccCCcccEEEEeecccccc
Confidence               579999999998753                    12346899999987543311  112233455566666652  


Q ss_pred             -hcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC-----CcccccccceecCCc
Q psy16044        194 -KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV-----GIRYSHRQPRLINGK  265 (436)
Q Consensus       194 -~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~-----~~~y~~v~~~~~~~~  265 (436)
                       .|..  ...+.|+|++...+..++|.|||||||++.    .++|+||+|||...|+.     +.+|++|..+...+.
T Consensus       167 ~~~~~--~~~~~~iCag~~~~~gdtC~gdsGgPl~~~----~~~~~Gi~s~g~~~C~~~~~~~p~vyt~v~~~~~~~~  238 (268)
T 1arb_A          167 VAWGG--GAGTTHLNVQWQPSGGVTEPGSSGSPIYSP----EKRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGG  238 (268)
T ss_dssp             ECTTS--SSCSSEEEEECCTTSCCCCTTCTTCEEECT----TSCEEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTTS
T ss_pred             ccccc--cccCCeEEEeeecCCCCCccCcccCCcEee----CCEEEEEEeecCcccCCCCCCCCceEEEeeeeeccCC
Confidence             2321  234689999754222479999999999973    24599999999866863     578999987766553

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.93  E-value=6.2e-26  Score=205.59  Aligned_cols=179  Identities=17%  Similarity=0.118  Sum_probs=122.0

Q ss_pred             ccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccC--CceEEEee
Q psy16044         32 ESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEE--KSEVRIPV  109 (436)
Q Consensus        32 ~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~--~~~~~~~v  109 (436)
                      ++..++|||++.+......    .++|+|+||+++||||||||+.....   ....+.+..|........  ...+.+.+
T Consensus        35 ~a~~~~~p~~~~v~i~~~~----~~~c~G~lI~~~~VLTAaHcv~~~~~---~~~~v~~~~G~~~~~~~~~~~~~~~~~~  107 (242)
T 1agj_A           35 EKDRQKYPYNTIGNVFVKG----QTSATGVLIGKNTVLTNRHIAKFANG---DPSKVSFRPSINTDDNGNTETPYGEYEV  107 (242)
T ss_dssp             TTGGGSTTGGGEEEEEETT----TEEEEEEECSSSEEEECHHHHGGGTT---CGGGEEEEETCEECTTSCEECTTCCEEE
T ss_pred             cccccccccceEEEEEECC----CccEEEEEEeCCEEEEChhhcccCCC---CceEEEEecCccccccccccccCCceeE
Confidence            4778899999776554311    58999999999999999999965311   112344444765432110  01134667


Q ss_pred             eEEEeCCCCCCCCCceeEEEeCCCCCC--CCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccc
Q psy16044        110 ERIRVHEEFHNYHHDIALLKLSRPTSA--RDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN  187 (436)
Q Consensus       110 ~~i~~hp~y~~~~~DiAll~L~~~~~~--~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~  187 (436)
                      +.+..|| |+ ..+|||||||+.|+..  ++..++|+||+..  .....+..++++|||.....    ..++...+.+++
T Consensus       108 ~~i~~~~-~~-~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~--~~~~~g~~~~v~Gwg~~~~~----~~l~~~~~~~~~  179 (242)
T 1agj_A          108 KEILQEP-FG-AGVDLALIRLKPDQNGVSLGDKISPAKIGTS--NDLKDGDKLELIGYPFDHKV----NQMHRSEIELTT  179 (242)
T ss_dssp             EEEESCT-TC-TTSCCEEEEECCCTTSCCHHHHSCCCEECCS--TTCCTTCEEEEEECCTTTST----TCCEEEEEEECC
T ss_pred             EEEEeCC-CC-CCCcEEEEEEcCCCccccccccccceecCcc--ccCCCCCEEEEEeCCCCCCC----ccceeeeeeEec
Confidence            8888999 75 5789999999999641  2346899999863  23457899999999976532    245666665554


Q ss_pred             hhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC
Q psy16044        188 ISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC  248 (436)
Q Consensus       188 ~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C  248 (436)
                      ..              ..++..     .++|.|||||||++.  ++  .|+||+|||.+|+
T Consensus       180 ~~--------------~~~~~~-----~~~c~GdSGGPl~~~--~g--~lvGI~s~g~~c~  217 (242)
T 1agj_A          180 LS--------------RGLRYY-----GFTVPGNSGSGIFNS--NG--ELVGIHSSKVSHL  217 (242)
T ss_dssp             GG--------------GSEEEE-----CCCCGGGTTCEEECT--TS--EEEEEEEEEEECS
T ss_pred             CC--------------ceEEEe-----CCcCCCCCchHhccc--CC--EEEEEEecccccc
Confidence            21              112221     468999999999963  23  6999999998844

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.91  E-value=1.9e-25  Score=224.15  Aligned_cols=160  Identities=24%  Similarity=0.402  Sum_probs=125.3

Q ss_pred             CCCccccc---------ccccccceeecccccccCCCCeeeeccCCCCC----CCCCCCCeEEEEecCCCCCCC------
Q psy16044        271 AWPWQNLI---------TSFLSAALLKLSRPTSARDKGVRAVCLTDADK----RPVNPKQQCVATGWGRVKPKG------  331 (436)
Q Consensus       271 ~~p~~~~~---------~~~~diali~l~~~~~~~~~~v~picl~~~~~----~~~~~~~~~~~~Gwg~~~~~~------  331 (436)
                      .||.|+..         +..||||||+|++|+.++.. |+|||||....    ...+.+..|++.|||......      
T Consensus       288 ~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~-v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~  366 (497)
T 1rrk_A          288 FHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFV  366 (497)
T ss_dssp             ECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTT-BCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEE
T ss_pred             eCCCccccccccccccccCCCcEEEEEECCCCcCCCC-eeeeeCCCCCccccccccCCCCchhcccccccCCccccceee
Confidence            58999864         56899999999999999988 99999997532    134568889999999654321      


Q ss_pred             -CccccceEEEEEeeC---cccccccc------CC----CccCCCCceecccCCC--CCCCccCCCCceeeeEecCCcEE
Q psy16044        332 -DLVSKLRQIRVPLHN---ISVCRDKY------GD----SVELHGGHLCGGQLDG--FSGACIGDSGGPLQCSLKDGRWY  395 (436)
Q Consensus       332 -~~~~~l~~~~~~~~~---~~~C~~~~------~~----~~~~~~~~~C~~~~~~--~~~~c~gdsGgpl~~~~~~~~~~  395 (436)
                       ..+..|+++.+++++   .++|++.+      ..    ...++++|||++...+  .++.|+|||||||+|.. +++|+
T Consensus       367 ~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C~GDSGGPL~~~~-~~~~~  445 (497)
T 1rrk_A          367 SEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFI  445 (497)
T ss_dssp             EESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEE-TTEEE
T ss_pred             ccCCCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCCCCcCCCCCCCCeeEEEe-CCEEE
Confidence             134679999999998   68998642      11    1137899999987543  36899999999999985 78999


Q ss_pred             EEEEEEecC--CCC----CCCCCe----EEEeCcccHHHHHHHHhhh
Q psy16044        396 LAGITSFGS--GCA----KSGYPD----VYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       396 l~Gi~S~~~--~c~----~~~~p~----v~t~V~~~~~WI~~~i~~~  432 (436)
                      |+||+|||.  +|+    ..+.|+    +||+|++|++||+++|+..
T Consensus       446 l~GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~~~  492 (497)
T 1rrk_A          446 QVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  492 (497)
T ss_dssp             EEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTTS
T ss_pred             EEEEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHHHHHhCcc
Confidence            999999997  698    445675    9999999999999999754

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.91  E-value=2.3e-25  Score=195.90  Aligned_cols=185  Identities=16%  Similarity=0.056  Sum_probs=118.6

Q ss_pred             ccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeE
Q psy16044         32 ESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVER  111 (436)
Q Consensus        32 ~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~  111 (436)
                      .+..++|||+|++.         .++|+|+||+++||||||||+....     .....+.++....   ....+.+.+.+
T Consensus         7 i~~~~~~P~~v~~~---------~~~c~G~lI~~~~VLTaaHcv~~~~-----~~~~~v~v~~~~~---~~~~~~~~~~~   69 (200)
T 2w7s_A            7 ITDATKEPYNSVVA---------FVGGTGVVVGKNTIVTNKHIAKSND-----IFKNRVSAHHSSK---GKGGGNYDVKD   69 (200)
T ss_dssp             ESCTTSTTGGGEEE---------ETTEEEEEEETTEEEECHHHHHHHH-----HTTCCEEETCCSS---SCCCCEECEEE
T ss_pred             eeccccCCcccccc---------cceEEEEEEECCEEEEChhhcCCcc-----cCCcEEEEEecCc---cCCCcEEEEEE
Confidence            37789999999874         2469999999999999999985421     0012344443221   11224466666


Q ss_pred             EEeCCCCCCCCCceeEEEeCCC----CCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccc
Q psy16044        112 IRVHEEFHNYHHDIALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN  187 (436)
Q Consensus       112 i~~hp~y~~~~~DiAll~L~~~----~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~  187 (436)
                      ++.+..    .+|||||||+.+    +. ++..++|+||+.    ....+..++++||+......    ..+.....+++
T Consensus        70 i~~~~~----~~DiAll~l~~~~~~~~~-~~~~v~pi~l~~----~~~~g~~v~v~G~p~g~~~~----~~~~~~~g~v~  136 (200)
T 2w7s_A           70 IVEYPG----KEDLAIVHVHETSTEGLN-FNKNVSYTKFAD----GAKVKDRISVIGYPKGAQTK----YKMFESTGTIN  136 (200)
T ss_dssp             EEECSS----SSSCEEEEECSBCTTSCB-GGGSCCCCCBCC----CCCTTCEEEEEECTTHHHHT----SCEEEEEEEEE
T ss_pred             EecCCC----cceEEEEEECCCCCCccc-ccccccceeccc----cCCCCCEEEEEECCCCCCCc----cceEEeEEEEE
Confidence            664432    589999999986    66 566799999973    24568899999986321110    01223333333


Q ss_pred             hhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC-CCC--cc-cccccceecC
Q psy16044        188 ISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-GVG--IR-YSHRQPRLIN  263 (436)
Q Consensus       188 ~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C-~~~--~~-y~~v~~~~~~  263 (436)
                      .  +          ...++|..     .+.|.|||||||++.  ++  .|+||+|||.++| ...  .+ |+  ..+..|
T Consensus       137 ~--~----------~~~~~~~~-----~~~~~GdSGGPl~~~--~g--~lvGI~s~g~~~~~~~~~~~v~~~--~~~~~w  193 (200)
T 2w7s_A          137 H--I----------SGTFMEFD-----AYAQPGNSGSPVLNS--KH--ELIGILYAGSGKDESEKNFGVYFT--PQLKEF  193 (200)
T ss_dssp             E--E----------ETTEEEEC-----SCCCTTCTTCEEECT--TS--CEEEEEEEEC----CCCEEEEECC--HHHHHH
T ss_pred             c--c----------CCCEEEEc-----ceeCCCCccCeEECc--CC--EEEEEEeccccCCCCccceeeecH--HHHHHH
Confidence            2  1          12567763     578999999999963  23  5999999998753 322  33 44  667888


Q ss_pred             CccccC
Q psy16044        264 GKESIR  269 (436)
Q Consensus       264 ~~~~~~  269 (436)
                      |.+.+.
T Consensus       194 I~~~~~  199 (200)
T 2w7s_A          194 IQNNIE  199 (200)
T ss_dssp             HHHTSC
T ss_pred             HHhhcc
Confidence            876553

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.91  E-value=8.4e-25  Score=193.01  Aligned_cols=185  Identities=13%  Similarity=0.068  Sum_probs=119.2

Q ss_pred             ccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeE
Q psy16044         32 ESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVER  111 (436)
Q Consensus        32 ~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~  111 (436)
                      .+..++|||+|.+.         .++|+|+||+++||||||||+....    ....+.+..+. .  .  .....+.+.+
T Consensus         7 ~~~~~~~P~~~~~~---------~~~c~G~lI~~~~VLTaaHcv~~~~----~~~~v~v~~~~-~--~--~~~~~~~~~~   68 (204)
T 2vid_A            7 VKDTNIFPYTGVVA---------FKSATGFVVGKNTILTNKHVSKNYK----VGDRITAHPNS-D--K--GNGGIYSIKK   68 (204)
T ss_dssp             CSCTTSTTGGGEEE---------CSSCEEEEEETTEEEECHHHHTTCC----TTCEEEESCCS-S--S--CCSCEEEEEE
T ss_pred             eccCCcCchhheEE---------eeeEEEEEEECCEEEEChhHCCCcc----CCceEEEEecc-c--c--CCCcEEEeeE
Confidence            47789999999764         2469999999999999999996531    11223332211 1  1  1223466777


Q ss_pred             EEeCCCCCCCCCceeEEEeCC--------CCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        112 IRVHEEFHNYHHDIALLKLSR--------PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       112 i~~hp~y~~~~~DiAll~L~~--------~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      ++.|+.    .+|||||||+.        ++. ++..++|+||+.    ....+..++++|||......   ..+. ...
T Consensus        69 i~~~~~----~~DiAll~l~~~~~~~~~~~~~-~~~~v~pi~l~~----~~~~g~~~~~~G~g~~~~~~---~~~~-~~~  135 (204)
T 2vid_A           69 IINYPG----KEDVSVIQVEERAIERGPKGFN-FNDNVTPFKYAA----GAKAGERIKVIGYPHPYKNK---YVLY-EST  135 (204)
T ss_dssp             EEECSS----SSCCEEEEECSEEEEEETTEEE-HHHHCCCCCBCS----CCCTTCEEEEEECCCCCC-----CCCE-EEE
T ss_pred             EecCCC----CCeEEEEEEcCccccccccccc-ccccccccccCC----cCCCCCEEEEEeCCCCCCCC---cceE-eec
Confidence            777653    57999999995        454 445689999975    24578899999999754221   1111 111


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC--CCCCC--cccccccc
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG--YCGVG--IRYSHRQP  259 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~--~C~~~--~~y~~v~~  259 (436)
                      ..+..            ....++|..     .++|.|||||||++.  +  +.|+||+|+|.+  .|...  .+|.. ..
T Consensus       136 g~v~~------------~~~~~~~~~-----~~~~~GdSGGPl~~~--~--g~lvGI~s~g~~~~~~~~~~~~~~~~-~~  193 (204)
T 2vid_A          136 GPVMS------------VEGSSIVYS-----AHTESGNSGSPVLNS--N--NELVGIHFASDVKNDDNRNAYGVYFT-PE  193 (204)
T ss_dssp             EEEEE------------EETTEEEEC-----CCCCGGGTTCEEECT--T--SCEEEEEEEECC---CCCCEEEECCC-HH
T ss_pred             cEEee------------ccCCeEEEe-----cccCCCCccCcEECC--C--CeEEEEEecCccCCCcccccceeEeC-HH
Confidence            11111            123678873     679999999999953  2  359999999985  34432  23333 66


Q ss_pred             eecCCccccC
Q psy16044        260 RLINGKESIR  269 (436)
Q Consensus       260 ~~~~~~~~~~  269 (436)
                      +..||.+.+.
T Consensus       194 ~~~wI~~~~~  203 (204)
T 2vid_A          194 IKKFIAENID  203 (204)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHhhcC
Confidence            7888876543

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.90  E-value=8.1e-24  Score=191.86  Aligned_cols=177  Identities=18%  Similarity=0.177  Sum_probs=117.1

Q ss_pred             cCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCc-c--CCceEEEee
Q psy16044         33 SIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTE-E--EKSEVRIPV  109 (436)
Q Consensus        33 a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~-~--~~~~~~~~v  109 (436)
                      +..++|||++.+.....  +  .++|+|+||+++||||||||+.+...   ....+.+..|...... .  ......+.+
T Consensus        29 ~~~~~~P~~~~~~i~~~--~--~~~c~G~lI~~~~VLTAaHcv~~~~~---~~~~v~v~~G~~~~~~~~~~~~~~~~~~~  101 (246)
T 1qtf_A           29 TDNARSPYNSVGTVFVK--G--STLATGVLIGKNTIVTNYHVAREAAK---NPSNIIFTPAQNRDAEKNEFPTPYGKFEA  101 (246)
T ss_dssp             SCCSSTTGGGEEEEEET--T--TEEEEEEEEETTEEEECHHHHGGGTT---CGGGEEEEETCCCCTTTTCCCCTTCCEEE
T ss_pred             hhcCcCchhcEEEEEEC--C--CceEEEEEEECCEEEECHHhCCCCCC---CceEEEEecCccccccccccccCCceEEE
Confidence            56789999987543221  1  68999999999999999999965311   1245778888654321 0  001135678


Q ss_pred             eEEEeCCCCCCCCCceeEEEeCCCCC--CCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccc
Q psy16044        110 ERIRVHEEFHNYHHDIALLKLSRPTS--ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN  187 (436)
Q Consensus       110 ~~i~~hp~y~~~~~DiAll~L~~~~~--~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~  187 (436)
                      +.+..|| |+ ..+|||||+|+.++.  .++..++|++|+...  ....+..++++||+.....    ..+....+.+.+
T Consensus       102 ~~i~~hp-~~-~~~DiALLkl~~~~~~~~~~~~v~~i~L~~~~--~~~~g~~v~v~G~p~g~~~----~~~~~~~~~~~~  173 (246)
T 1qtf_A          102 EEIKESP-YG-QGLDLAIIKLKPNEKGESAGDLIQPANIPDHI--DIAKGDKYSLLGYPYNYSA----YSLYQSQIEMFN  173 (246)
T ss_dssp             EEEESCT-TC-TTSCCEEEEECCCTTSCCHHHHSCCCCCCSSC--CCCTTCEEEEEECCTTTST----TCCEEEEEEESS
T ss_pred             EEEEeCC-CC-CCCCEEEEEEeCCccccccccceeeeecCCcc--ccCCCCEEEEEECCCCCCC----ceeEeeeeeecC
Confidence            8889999 54 468999999999972  134468999998642  3457899999999753321    122222333322


Q ss_pred             hhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC
Q psy16044        188 ISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV  250 (436)
Q Consensus       188 ~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~  250 (436)
                      .          .    ..        ..++|.|||||||+..  +|  .|+||+|||...+..
T Consensus       174 ~----------~----~~--------~~~~~~GdSGGPlv~~--~g--~lvGI~s~g~~~~~i  210 (246)
T 1qtf_A          174 D----------S----QY--------FGYTEVGNSGSGIFNL--KG--ELIGIHSGKGGQHNL  210 (246)
T ss_dssp             S----------S----BE--------ESCCCGGGTTCEEECT--TC--CEEEEEEEEETTTTE
T ss_pred             c----------E----EE--------eCCCCCCCchhheECC--CC--EEEEEEeccccCccc
Confidence            0          0    00        1468999999999952  33  499999999754433

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=99.90  E-value=3.6e-24  Score=215.44  Aligned_cols=160  Identities=19%  Similarity=0.307  Sum_probs=121.4

Q ss_pred             CCCccccc---------ccccccceeecccccccCCCCeeeeccCCCCC----CCCCCCCeEEEEecCCCCCCCCcc---
Q psy16044        271 AWPWQNLI---------TSFLSAALLKLSRPTSARDKGVRAVCLTDADK----RPVNPKQQCVATGWGRVKPKGDLV---  334 (436)
Q Consensus       271 ~~p~~~~~---------~~~~diali~l~~~~~~~~~~v~picl~~~~~----~~~~~~~~~~~~Gwg~~~~~~~~~---  334 (436)
                      .||.|+..         +..||||||+|++|+.++.. |+|||||....    .....+..|.+.|||.........   
T Consensus       297 ~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~-v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~~~~~~~~~~  375 (509)
T 2odp_A          297 ISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTH-ARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFV  375 (509)
T ss_dssp             ECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCCCBTT-BCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEE
T ss_pred             ECCCCccccccccccccccCCCeEEEEECCcccCCCC-cccccCCCCcccchhhccCCCCccccccccccccccceeeee
Confidence            49999864         56799999999999999988 99999996532    123568889999999764321111   


Q ss_pred             -ccceEEEEEee---Ccccccccc-------CC----CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEE
Q psy16044        335 -SKLRQIRVPLH---NISVCRDKY-------GD----SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI  399 (436)
Q Consensus       335 -~~l~~~~~~~~---~~~~C~~~~-------~~----~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi  399 (436)
                       ...+++.+.++   +.++|+..+       ..    ...++++|||++. .++.+.|+|||||||+|.. +++|+|+||
T Consensus       376 ~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~-~~~~~~C~GDSGGPL~~~~-~~~~~l~GI  453 (509)
T 2odp_A          376 ALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKGESGGAVFLER-RFRFFQVGL  453 (509)
T ss_dssp             CTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECC-TTCCCCCGGGTTCEEEEEE-TTEEEEEEE
T ss_pred             cccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCC-CCCCcccCCCccCceEEEE-CCeEEEEEE
Confidence             11245566664   689998752       21    1247899999986 4456899999999999985 689999999


Q ss_pred             EEecC--CCCC---------CCCC------eEEEeCcccHHHHHHHHhhhh
Q psy16044        400 TSFGS--GCAK---------SGYP------DVYTKLSFYLPWIRKQINIAV  433 (436)
Q Consensus       400 ~S~~~--~c~~---------~~~p------~v~t~V~~~~~WI~~~i~~~~  433 (436)
                      +|||.  +|+.         ...|      ++||||++|++||+++|+...
T Consensus       454 vS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~~~~  504 (509)
T 2odp_A          454 VSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGDVL  504 (509)
T ss_dssp             EEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHTTTS
T ss_pred             EEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhCCcc
Confidence            99997  6862         3345      599999999999999997653

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.89  E-value=1.1e-23  Score=161.69  Aligned_cols=94  Identities=31%  Similarity=0.769  Sum_probs=83.6

Q ss_pred             ccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCC
Q psy16044        333 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYP  412 (436)
Q Consensus       333 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p  412 (436)
                      .+..|+++.++++++++|++.+..  .++++|||++.  .+.+.|.|||||||++.. +++|+|+||+|||..|+..+.|
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~~~--~i~~~~iCa~~--~~~~~C~GDSGGPL~~~~-~~~~~l~GIvS~g~~c~~~~~p   77 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYWGT--KIKDAMICAGA--SGVSSCMGDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTSTP   77 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHGG--GCCTTEEEEEC--SSCBCCTTCTTCEEEEEE-TTEEEEEEEEEECCTTCCTTSE
T ss_pred             cCccceEEEEEECCHHHhhHHhcC--CCCCceEeecC--CCCCCCcCCCCCcEEEEe-CCeEEEEEEEEeCCCCCCCCCC
Confidence            367899999999999999988754  47899999983  346899999999999986 7899999999999998877889


Q ss_pred             eEEEeCcccHHHHHHHHhh
Q psy16044        413 DVYTKLSFYLPWIRKQINI  431 (436)
Q Consensus       413 ~v~t~V~~~~~WI~~~i~~  431 (436)
                      ++||||++|++||+++|+.
T Consensus        78 ~vyt~V~~y~~WI~~~~~~   96 (97)
T 1yph_E           78 GVYARVTALVNWVQQTLAA   96 (97)
T ss_dssp             EEEEEHHHHHHHHHHHHHH
T ss_pred             eEEEEHHHhHHHHHHHHcc
Confidence            9999999999999999875

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.89  E-value=7.1e-23  Score=181.12  Aligned_cols=165  Identities=14%  Similarity=0.094  Sum_probs=112.4

Q ss_pred             cCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEE
Q psy16044         33 SIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERI  112 (436)
Q Consensus        33 a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i  112 (436)
                      +..++|||+|++.         .++|+|+||+++||||||||+.+..    ....+.|.+|...     ...+.+.+.++
T Consensus         9 ~~~~~~P~~v~~~---------~~~c~G~lI~~~~VLTaaHcv~~~~----~~~~i~v~~~~~~-----~~g~~~~~~~v   70 (210)
T 2as9_A            9 KDTNNFPYNGVVS---------FKDATGFVIGKNTIITNKHVSKDYK----VGDRITAHPNGDK-----GNGGIYKIKSI   70 (210)
T ss_dssp             SCTTSTTGGGEEE---------CSSCEEEEEETTEEEECHHHHHHCC----TTCEEEESCCGGG-----CCSCEEEEEEE
T ss_pred             ecCCcCCeEEEEE---------eeeEEEEEEeCCEEEECHhHCCccC----CCCEEEEEeCccc-----CCCCEEEEEEE
Confidence            5578999999763         3569999999999999999986521    1234566555421     11234556666


Q ss_pred             EeCCCCCCCCCceeEEEeCC--------CCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        113 RVHEEFHNYHHDIALLKLSR--------PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       113 ~~hp~y~~~~~DiAll~L~~--------~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.+.    ..+|||||||+.        |+. ++..++|++|+.    ....+..++++||+......   ..+ .....
T Consensus        71 ~~~~----~~~DiAll~l~~~~~~~~~~~~~-~~~~v~~i~l~~----~~~~g~~v~v~G~p~~~~~~---~~l-~~~~g  137 (210)
T 2as9_A           71 SDYP----GDEDISVMNIEEQAVERGPKGFN-FNENVQAFNFAK----DAKVDDKIKVIGYPLPAQNS---FKQ-FESTG  137 (210)
T ss_dssp             EECS----SSSSCEEEEECSEEEEEETTEEE-GGGSCCCCCBCS----CCCTTCEEEEEECSSTTTTT---SCC-EEEEE
T ss_pred             EeCC----CCCcEEEEEecCccccccccccc-cccccceeecCC----CCCCCCEEEEEeCCCCCCCC---cce-EEeee
Confidence            5533    258999999998        566 566789999963    24578999999998643221   122 33444


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG  249 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~  249 (436)
                      +++..            ...++|+.     ...|.|||||||++.  +|  .|+||+|||...++
T Consensus       138 ~v~~~------------~~~~i~~~-----~~~~~GdSGGPlv~~--~g--~lvGI~s~g~~~~~  181 (210)
T 2as9_A          138 TIKRI------------KDNILNFD-----AYIEPGNSGSPVLNS--NN--EVIGVVYGGIGKIG  181 (210)
T ss_dssp             EEEEE------------ETTEEEEE-----CCCCTTCTTCEEECT--TS--CEEEEECCSCCCTT
T ss_pred             EEccc------------cCCeEEEc-----CccCCCCccCcEECC--CC--eEEEEEecccccCC
Confidence            44332            12578874     578999999999963  34  49999999987554

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.88  E-value=9.9e-24  Score=221.87  Aligned_cols=161  Identities=24%  Similarity=0.382  Sum_probs=129.2

Q ss_pred             CCCcccccc---------cccccceeecccccccCCCCeeeeccCCCCC----CCCCCCCeEEEEecCCCCCCC------
Q psy16044        271 AWPWQNLIT---------SFLSAALLKLSRPTSARDKGVRAVCLTDADK----RPVNPKQQCVATGWGRVKPKG------  331 (436)
Q Consensus       271 ~~p~~~~~~---------~~~diali~l~~~~~~~~~~v~picl~~~~~----~~~~~~~~~~~~Gwg~~~~~~------  331 (436)
                      .||.|+...         ..||||||+|++|+.++.. |+|||||....    .....+..|.+.|||......      
T Consensus       530 ~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~-v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~~~~~~  608 (741)
T 3hrz_D          530 FHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFV  608 (741)
T ss_dssp             ECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSS-CCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEE
T ss_pred             ECCCCCcccccccccCCccCCcEEEEEECCcCcCCCC-ccccccCCcccccchhccCCCCccccccccccccccccceec
Confidence            489998654         6899999999999999988 99999996432    235678899999999765432      


Q ss_pred             -CccccceEEEEEeeC---ccccccccC------C----CccCCCCceecccCCC--CCCCccCCCCceeeeEecCCcEE
Q psy16044        332 -DLVSKLRQIRVPLHN---ISVCRDKYG------D----SVELHGGHLCGGQLDG--FSGACIGDSGGPLQCSLKDGRWY  395 (436)
Q Consensus       332 -~~~~~l~~~~~~~~~---~~~C~~~~~------~----~~~~~~~~~C~~~~~~--~~~~c~gdsGgpl~~~~~~~~~~  395 (436)
                       .....|+.+.+.+++   .+.|+..+.      .    ...++++|||++...+  ..+.|+|||||||++.. +++|+
T Consensus       609 ~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~~-~~~~~  687 (741)
T 3hrz_D          609 SEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFI  687 (741)
T ss_dssp             EESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEE-TTEEE
T ss_pred             cccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcCcCcccCceEEee-CCeEE
Confidence             125578999999998   788987421      1    1247899999987652  46899999999999986 78999


Q ss_pred             EEEEEEecC--CCCC---CCCC-----eEEEeCcccHHHHHHHHhhhh
Q psy16044        396 LAGITSFGS--GCAK---SGYP-----DVYTKLSFYLPWIRKQINIAV  433 (436)
Q Consensus       396 l~Gi~S~~~--~c~~---~~~p-----~v~t~V~~~~~WI~~~i~~~~  433 (436)
                      |+||+|||.  +|+.   .+.|     ++||+|+.|++||+++|+.+.
T Consensus       688 lvGIvS~G~~~~C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~~~~  735 (741)
T 3hrz_D          688 QVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDED  735 (741)
T ss_dssp             EEEEEEEESSCCCC------CCCTTCEEEEEEGGGSHHHHHHHTTTSS
T ss_pred             EEEEEeecCCcccCCcccccCCCCCccceEEEhHHhHHHHHHHhcCCC
Confidence            999999997  8987   5778     999999999999999998753

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.86  E-value=1.6e-21  Score=144.24  Aligned_cols=79  Identities=33%  Similarity=0.611  Sum_probs=67.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.++..++|||+|+|+...      .++|+||||+++||||||||+..         .+.|++|..++.......+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~CgGslIs~~~VLTAAHC~~~---------~~~v~~G~~~~~~~~~~~~~   65 (80)
T 2pka_A            1 IIGGRECEKNSHPWQVAIYHYS------SFQCGGVLVNPKWVLTAAHCKND---------NYEVWLGRHNLFENENTAQF   65 (80)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEEEETTEEEECGGGCCS---------CCEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------ceEEEEEEEcCCEEEECHHHCCC---------CcEEEEeeeEcCCCCCCcEE
Confidence            6899999999999999998542      68999999999999999999854         24699999887765555688


Q ss_pred             EeeeEEEeCCCCCC
Q psy16044        107 IPVERIRVHEEFHN  120 (436)
Q Consensus       107 ~~v~~i~~hp~y~~  120 (436)
                      +.|+++++||+|+.
T Consensus        66 ~~v~~i~~Hp~y~~   79 (80)
T 2pka_A           66 FGVTADFPHPGFNL   79 (80)
T ss_dssp             EEEEEEEECTTTTT
T ss_pred             EEEEEEEECcCCCC
Confidence            89999999999963

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=99.85  E-value=6.9e-23  Score=182.19  Aligned_cols=131  Identities=10%  Similarity=-0.040  Sum_probs=107.8

Q ss_pred             CCCCccc-ccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        270 GAWPWQN-LITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       270 ~~~p~~~-~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      ..||.|+ .....+|||||+|++|  ++.. ++|||||....   ..++.|+++|||.+.. ...+..|+++.+.+++.+
T Consensus        83 ~~hp~y~~~~~~~~DiAll~L~~~--~~~~-v~pi~l~~~~~---~~g~~~~~~Gwg~~~~-~~~~~~l~~~~~~~~~~~  155 (215)
T 1p3c_A           83 YVPSGYINTGASQYDFAVIKTDTN--IGNT-VGYRSIRQVTN---LTGTTIKISGYPGDKM-RSTGKVSQWEMSGSVTRE  155 (215)
T ss_dssp             ECCHHHHHHCCGGGCCEEEEESSC--HHHH-HCCCCBCCCSC---CTTCEEEEEECCHHHH-HHHSSCCCEEEEEECCEE
T ss_pred             EeCCccccCCCcccCEEEEEECCC--Cccc-ceeeecCCCcc---cCCCeEEEecCCCCCc-ccccceechhccCccCcc
Confidence            3589994 5677899999999997  4444 99999997653   6789999999996543 223567999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      .|...+.                 ..+.|.|||||||++.  ++  +|+||+|||..|+  ..|.+||+|++|++||+++
T Consensus       156 ~c~~~~~-----------------~~~~C~GDSGgPl~~~--~g--~lvGi~S~g~~c~--~~p~v~t~v~~~~~WI~~~  212 (215)
T 1p3c_A          156 DTNLAYY-----------------TIDTFSGNSGSAMLDQ--NQ--QIVGVHNAGYSNG--TINGGPKATAAFVEFINYA  212 (215)
T ss_dssp             CSSEEEE-----------------CCCCCTTCTTCEEECT--TS--CEEEECCEEEGGG--TEEEEEBCCHHHHHHHHHH
T ss_pred             cchheee-----------------ccccCCCCCCCeeEcc--CC--eEEEEEecccCCC--ccCceeEechHHHHHHHHH
Confidence            9987641                 2478999999999984  33  6999999998887  5699999999999999998


Q ss_pred             Hh
Q psy16044        429 IN  430 (436)
Q Consensus       429 i~  430 (436)
                      ++
T Consensus       213 ~~  214 (215)
T 1p3c_A          213 KA  214 (215)
T ss_dssp             HT
T ss_pred             hc
Confidence            75

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.82  E-value=1.3e-21  Score=169.56  Aligned_cols=166  Identities=19%  Similarity=0.253  Sum_probs=109.7

Q ss_pred             CeeeE-EEEec---CCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEe
Q psy16044         55 PHWCG-AVLIH---PSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKL  130 (436)
Q Consensus        55 ~~~C~-GtLIs---~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L  130 (436)
                      ...|+ |.++.   ++||||||||+...       ..+.+..+  ..       +...  . ..+..|  ..+|||||||
T Consensus        11 ~~~ct~Gf~v~~~~~~~ilTaaHcv~~~-------~~~~v~~~--~~-------~~~g--~-~~~~~~--~~~DiAll~l   69 (185)
T 2qa9_E           11 TGRCSLGFNVRSGSTYYFLTAGHCTDGA-------TTWWANSA--RT-------TVLG--T-TSGSSF--PNNDYGIVRY   69 (185)
T ss_dssp             SCEEECCEEEEETTEEEEEECHHHHTTC-------SEEESSTT--SC-------SEEE--E-EEEEEC--SBSCEEEEEE
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCC-------CcEEecCC--Cc-------eEeE--E-Eecccc--CCCCEEEEEe
Confidence            35799 99987   47999999998653       22222111  00       0000  0 011111  3489999999


Q ss_pred             CC-CCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEec
Q psy16044        131 SR-PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGG  209 (436)
Q Consensus       131 ~~-~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~  209 (436)
                      ++ ++. ++..++|++|+..  .....+..+.++||+..    .....|+...+++ ....|. .+.   .....++|+ 
T Consensus        70 ~~~~~~-~~~~v~~~~l~~~--~~~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v-~~~~~~-~~~---~~~~~~~ca-  136 (185)
T 2qa9_E           70 TNTTIP-KDGTVGGQDITSA--ANATVGMAVTRRGSTTG----THSGSVTALNATV-NYGGGD-VVY---GMIRTNVCA-  136 (185)
T ss_dssp             CCSSSC-CCCEETTEECCEE--CCCCTTCEEEEEETTTE----EEEEEEEEEEEEE-ECSTTC-EEE---EEEEESCCC-
T ss_pred             cCCCcc-ccCccceeeeCCc--ccCCCCCEEEEecCCCc----eeEeEEEEEEEEE-EcCCCC-EEe---ceEEecccC-
Confidence            99 887 6778899998753  23457899999999642    2234577766664 333332 111   112356665 


Q ss_pred             cCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccceecCCccc
Q psy16044        210 QLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPRLINGKES  267 (436)
Q Consensus       210 ~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~~~~~~~~  267 (436)
                              |+|||||||++.   +  .|+||+|||.++|.  .+.+|++|..+..||...
T Consensus       137 --------c~GDSGGPlv~~---~--~~vGI~s~g~~~~~~~~p~vyt~v~~~~~wI~~~  183 (185)
T 2qa9_E          137 --------EPGDSGGPLYSG---T--RAIGLTSGGSGNCSSGGTTFFQPVTEALSAYGVS  183 (185)
T ss_dssp             --------CTTCTTCEEEET---T--EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTCE
T ss_pred             --------CCCCccceEEEC---C--EEEEEEEecCCCCCCCCcEEEEEHHHHHHhhCcE
Confidence                    999999999974   2  69999999988785  457899999999998654

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.74  E-value=1.1e-18  Score=133.67  Aligned_cols=90  Identities=30%  Similarity=0.659  Sum_probs=76.8

Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CC
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VG  251 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~  251 (436)
                      .+..|+++.+++++.++|+..+..  ...+.||||+.  ...++|.|||||||++.. +++|+|+||+|||.+||.  .+
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~~~--~i~~~~iCa~~--~~~~~C~GDSGGPL~~~~-~~~~~l~GIvS~g~~c~~~~~p   77 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYWGT--KIKDAMICAGA--SGVSSCMGDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTSTP   77 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHGG--GCCTTEEEEEC--SSCBCCTTCTTCEEEEEE-TTEEEEEEEEEECCTTCCTTSE
T ss_pred             cCccceEEEEEECCHHHhhHHhcC--CCCCceEeecC--CCCCCCcCCCCCcEEEEe-CCeEEEEEEEEeCCCCCCCCCC
Confidence            356799999999999999988753  35679999983  346899999999999985 789999999999998775  36


Q ss_pred             cccccccceecCCcccc
Q psy16044        252 IRYSHRQPRLINGKESI  268 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~  268 (436)
                      .+|++|.+|..||.+.+
T Consensus        78 ~vyt~V~~y~~WI~~~~   94 (97)
T 1yph_E           78 GVYARVTALVNWVQQTL   94 (97)
T ss_dssp             EEEEEHHHHHHHHHHHH
T ss_pred             eEEEEHHHhHHHHHHHH
Confidence            79999999999998654

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=99.72  E-value=8.3e-18  Score=151.97  Aligned_cols=93  Identities=28%  Similarity=0.501  Sum_probs=76.6

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC-CCC---C
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCG---V  250 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~-~C~---~  250 (436)
                      +..|++..+++++.+.|+..+.......+.||||+. .+..++|.|||||||++...+++|+|+||+|||.. .|+   .
T Consensus       142 ~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~~~~C~~~~~  220 (241)
T 1bru_P          142 PDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHK  220 (241)
T ss_dssp             CSBCEEEEEEEECHHHHTSTTTTGGGCCTTEEEECC-SSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTC
T ss_pred             CccceeCEEEEecHHHhCcccccCCcCCCceEeecC-CCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcCCCCCCCCCC
Confidence            467999999999999998864322345679999984 44578999999999999866889999999999973 365   4


Q ss_pred             CcccccccceecCCcccc
Q psy16044        251 GIRYSHRQPRLINGKESI  268 (436)
Q Consensus       251 ~~~y~~v~~~~~~~~~~~  268 (436)
                      +.+|++|.+|..||.+.+
T Consensus       221 p~vyt~V~~~~~WI~~~i  238 (241)
T 1bru_P          221 PSVFTRVSNYIDWINSVI  238 (241)
T ss_dssp             CEEEEEGGGSHHHHHHHH
T ss_pred             CcEEEEHHHhHHHHHHHH
Confidence            689999999999998764

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.72  E-value=8.4e-19  Score=151.72  Aligned_cols=124  Identities=18%  Similarity=0.180  Sum_probs=93.6

Q ss_pred             cccccceeeccc-ccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCc
Q psy16044        280 SFLSAALLKLSR-PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV  358 (436)
Q Consensus       280 ~~~diali~l~~-~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~  358 (436)
                      ..+|||||||+. ++.++.. ++|++|+...  .+..++.+.++||+..    .....|+.+.+++ +...|. .+.   
T Consensus        60 ~~~DiAll~l~~~~~~~~~~-v~~~~l~~~~--~~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v-~~~~~~-~~~---  127 (185)
T 2qa9_E           60 PNNDYGIVRYTNTTIPKDGT-VGGQDITSAA--NATVGMAVTRRGSTTG----THSGSVTALNATV-NYGGGD-VVY---  127 (185)
T ss_dssp             SBSCEEEEEECCSSSCCCCE-ETTEECCEEC--CCCTTCEEEEEETTTE----EEEEEEEEEEEEE-ECSTTC-EEE---
T ss_pred             CCCCEEEEEecCCCccccCc-cceeeeCCcc--cCCCCCEEEEecCCCc----eeEeEEEEEEEEE-EcCCCC-EEe---
Confidence            358999999999 8888877 8999997532  3467899999999641    2345677777775 333442 121   


Q ss_pred             cCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        359 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       359 ~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      .+...|+|+         |+|||||||++.   +  .|+||+||+.+|+..+.|++|++|+.|++||+..+
T Consensus       128 ~~~~~~~ca---------c~GDSGGPlv~~---~--~~vGI~s~g~~~~~~~~p~vyt~v~~~~~wI~~~l  184 (185)
T 2qa9_E          128 GMIRTNVCA---------EPGDSGGPLYSG---T--RAIGLTSGGSGNCSSGGTTFFQPVTEALSAYGVSV  184 (185)
T ss_dssp             EEEEESCCC---------CTTCTTCEEEET---T--EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTCEE
T ss_pred             ceEEecccC---------CCCCccceEEEC---C--EEEEEEEecCCCCCCCCcEEEEEHHHHHHhhCcEE
Confidence            123467886         999999999974   2  69999999988776677999999999999997543

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.71  E-value=1e-16  Score=144.25  Aligned_cols=166  Identities=20%  Similarity=0.213  Sum_probs=105.2

Q ss_pred             CCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEe
Q psy16044         35 RGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRV  114 (436)
Q Consensus        35 ~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~  114 (436)
                      ..-.|.+|.|.......+ ....|+|+||+++||||||||+.+       ...+.|.++.          ..+..+.+..
T Consensus        38 ~~~~~svV~I~~~~~~~~-~~~~GsG~iI~~~~VlTaaH~v~~-------~~~~~V~~~~----------~~~~~~~v~~   99 (237)
T 3k6y_A           38 AATEPSVVKIRSLAPRCQ-KVLEGTGFVISPDRVMTNAHVVAG-------SNNVTVYAGD----------KPFEATVVSY   99 (237)
T ss_dssp             HHHGGGEEEEEEEEGGGT-EEEEEEEEEEETTEEEECGGGTTT-------CSEEEEEETT----------EEEECEEEEE
T ss_pred             HHhcCCEEEEEEEecCCC-cceeEEEEEEECCEEEECHHHcCC-------CceEEEEECC----------cEEEEEEEEE
Confidence            345789999987542222 146799999999999999999865       2456777764          1334455566


Q ss_pred             CCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhh
Q psy16044        115 HEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK  194 (436)
Q Consensus       115 hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~  194 (436)
                      |+.     +|||||||+.      ..++|++|+.   .....+..++++||+.....     .+....+.......|...
T Consensus       100 ~~~-----~DiAll~l~~------~~~~~~~l~~---~~~~~G~~v~v~G~p~g~~~-----~~~~g~v~~~~~~~~~~~  160 (237)
T 3k6y_A          100 DPS-----VDVAILAVPH------LPPPPLVFAA---EPAKTGADVVVLGYPGGGNF-----TATPARIREAIRLSGPDI  160 (237)
T ss_dssp             ETT-----TTEEEEECTT------CCSCCCCBCS---SCCCTTCEEEEEECGGGCSC-----EEEEEEEEEEEEEEECCT
T ss_pred             cCC-----CCEEEEEeCC------CCCCceecCC---CCCCCCCEEEEEECCCCCCC-----ccceeEEEeeEeeccccc
Confidence            665     7999999982      2478889973   33557899999999864321     122222222222233332


Q ss_pred             cCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        195 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       195 ~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      +.........+++.     ....|.|||||||++.  +|+  |+||+|++..
T Consensus       161 ~~~~~~~~~~~~~~-----~~~~~~GdSGGPLv~~--~G~--vvGI~s~~~~  203 (237)
T 3k6y_A          161 YGDPEPVTRDVYTI-----RADVEQGDSGGPLIDL--NGQ--VLGVVFGAAI  203 (237)
T ss_dssp             TCCSSCEEEEEEEE-----ESCCCTTCTTCEEECT--TSC--EEEEEEEECS
T ss_pred             ccCCCcccccEEEe-----cCccCCCccHHHEECC--CCE--EEEEEEeecc
Confidence            22110000123333     2578999999999963  343  9999999865

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=99.71  E-value=1.9e-17  Score=153.80  Aligned_cols=93  Identities=29%  Similarity=0.457  Sum_probs=77.0

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCC---CCCCCccCCCCCeeeeEec-CCcEEEEEEEeEcCCCCC-
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD---GFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGYCG-  249 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~---~~~~~C~gDsGgPl~~~~~-~~~~~l~GI~S~g~~~C~-  249 (436)
                      +..|+++.+++++.+.|+..+..  ..++.||||+...   ...++|.|||||||++... +++|+|+||+|||.+|+. 
T Consensus       187 ~~~L~~~~v~i~~~~~C~~~~~~--~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~  264 (289)
T 2bdy_A          187 PSVLQVVNLPIVERPVCKDSTRI--RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD  264 (289)
T ss_dssp             CSBCEEEEEEBCCHHHHHHTCSS--CCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCT
T ss_pred             cccceEEEEEEECHHHhhccccC--cCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEECCCCCCC
Confidence            46799999999999999988753  3567999998643   2578999999999999752 789999999999987432 


Q ss_pred             -CCcccccccceecCCccccC
Q psy16044        250 -VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       250 -~~~~y~~v~~~~~~~~~~~~  269 (436)
                       .+.+|++|..|..||.+.+.
T Consensus       265 ~~p~vyt~V~~y~~WI~~~i~  285 (289)
T 2bdy_A          265 GKYGFYTHVFRLKKWIQKVID  285 (289)
T ss_dssp             TCCEEEEETGGGHHHHHHHHH
T ss_pred             CCCEEEEEHHHHHHHHHHHHH
Confidence             46799999999999987653

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=99.70  E-value=1.7e-17  Score=150.31  Aligned_cols=89  Identities=30%  Similarity=0.671  Sum_probs=76.0

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~  252 (436)
                      +..|+++.+++++.+.|+..+..  ...+.|||++  ....+.|.|||||||++.. +++|+|+||+|||.+||.  .+.
T Consensus       152 ~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~~-~~~~~l~GI~S~g~~c~~~~~p~  226 (245)
T 1t8o_A          152 PDRLQQASLPLLSNTNCKKYWGT--KIKDAMICAG--ASGVSSCMGDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTSTPG  226 (245)
T ss_dssp             CSBCEEEEEEEECHHHHHHHHGG--GCCTTEEEEE--CSSCBCCTTCTTCEEEEEE-TTEEEEEEEEEECCTTCCTTSEE
T ss_pred             cchheEEEEeeEcchhhhHhhcC--cCCCceEEcc--CCCCccCcccCcCCEEEEE-CCEEEEEEEEEeCCCCCCCCCCE
Confidence            45799999999999999988753  3467999998  3447899999999999985 789999999999998764  357


Q ss_pred             ccccccceecCCcccc
Q psy16044        253 RYSHRQPRLINGKESI  268 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~  268 (436)
                      +|++|..|..||.+.+
T Consensus       227 vyt~V~~~~~WI~~~~  242 (245)
T 1t8o_A          227 VYARVTALVNWVQQTL  242 (245)
T ss_dssp             EEEEGGGTHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHH
Confidence            9999999999998765

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.67  E-value=2.6e-17  Score=141.69  Aligned_cols=156  Identities=20%  Similarity=0.185  Sum_probs=100.0

Q ss_pred             CeeeE-EEEec---CCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEe
Q psy16044         55 PHWCG-AVLIH---PSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKL  130 (436)
Q Consensus        55 ~~~C~-GtLIs---~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L  130 (436)
                      ...|+ |.||+   ++||||||||+...         ..+.+|...               -..+     ..+|||||||
T Consensus        11 ~~~ct~G~~v~~~~~~~vlTaaHc~~~~---------~~~~~G~~~---------------~~~~-----~~~DiAlikl   61 (181)
T 2sga_A           11 GSRCSLGFNVSVNGVAHALTAGHCTNIS---------ASWSIGTRT---------------GTSF-----PNNDYGIIRH   61 (181)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTC---------SEETTEEEE---------------EEEC-----SBSCEEEEEE
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCC---------Cceeeccee---------------CCcC-----CCCCEEEEEc
Confidence            35799 99998   78999999998542         123333321               0111     2479999999


Q ss_pred             CCCCCCCCCceeee----eecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeE
Q psy16044        131 SRPTSARDKGVRAV----CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHL  206 (436)
Q Consensus       131 ~~~~~~~~~~v~pi----~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~  206 (436)
                      ++++. ++..++++    +++.. ...+..+..+.+.||....    ....++...+.+ +...+. .+       ..++
T Consensus        62 ~~~~~-~~~~v~~i~~~~~~~~~-~~~~~~G~~v~~~G~~~~~----t~G~v~~~~~~v-~~~~~~-~~-------~~~i  126 (181)
T 2sga_A           62 SNPAA-ADGRVYLYNGSYQDITT-AGNAFVGQAVQRSGSTTGL----RSGSVTGLNATV-NYGSSG-IV-------YGMI  126 (181)
T ss_dssp             SCGGG-CCCEEECSSSCEEECCE-ECCCCTTCEEEEEETTTEE----EEEEEEEEEEEE-ECGGGC-EE-------EEEE
T ss_pred             cCCCc-ccceEEecCCcceeecc-cccCCCCCEEEEeecCCCc----cEEEEEEeEEEE-ECCCCC-EE-------eeeE
Confidence            99887 56678887    66642 2335678899999987431    122355555553 322221 01       1233


Q ss_pred             EeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC--CcccccccceecCC
Q psy16044        207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV--GIRYSHRQPRLING  264 (436)
Q Consensus       207 Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~--~~~y~~v~~~~~~~  264 (436)
                      +..     .-.|+|||||||++.   +  .++||+|||.++|+.  +..|+++..+..|.
T Consensus       127 ~~~-----~c~~~GDSGGPlv~~---~--~~vGI~s~g~~~~~~~~~~v~~~v~~~~~~l  176 (181)
T 2sga_A          127 QTN-----VCAQPGDSGGSLFAG---S--TALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             EES-----CCCCTTCTTCEEEET---T--EEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             ecc-----cccCCCCCCCEEEEC---C--EEEEEEEeeCCCCcCCCceEEEEHHHHHHhc
Confidence            321     234689999999964   2  699999999887863  46788887766553

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=99.67  E-value=7.8e-17  Score=143.64  Aligned_cols=88  Identities=30%  Similarity=0.549  Sum_probs=73.5

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~  252 (436)
                      +..|++..+++++.++|+..+..  ...+.|||++...+..+.|.|||||||+++   +  +|+||+|||.+|+  +.+.
T Consensus       131 ~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~Gi~S~g~~C~~~~~p~  203 (222)
T 1hj8_A          131 SNKLQCLNIPILSYSDCNNSYPG--MITNAMFCAGYLEGGKDSCQGDSGGPVVCN---G--ELQGVVSWGYGCAEPGNPG  203 (222)
T ss_dssp             TTBCEEEEEEBCCHHHHHHHSTT--CCCTTEEEESCTTSSCBCCTTCTTCEEEET---T--EEEEEEEECSSSSCTTCCE
T ss_pred             CceeEEEEEEEcCHHHhhhhccC--CCCCCeEEeccCCCCCccCCCCcccceEEC---C--EEEEEEeecCCCCCCCcCc
Confidence            45799999999999999998754  345799999876666899999999999984   2  5999999998743  2468


Q ss_pred             ccccccceecCCccccC
Q psy16044        253 RYSHRQPRLINGKESIR  269 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~~  269 (436)
                      +|++|.+|..||.+.+.
T Consensus       204 vyt~v~~~~~WI~~~~~  220 (222)
T 1hj8_A          204 VYAKVCIFNDWLTSTMA  220 (222)
T ss_dssp             EEEEGGGGHHHHHHHHH
T ss_pred             EEEEhHHhHHHHHHHhh
Confidence            99999999999987653

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=99.66  E-value=1.4e-16  Score=142.15  Aligned_cols=88  Identities=26%  Similarity=0.427  Sum_probs=74.0

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CC
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VG  251 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~  251 (436)
                      +..|++..+++++.++|+..+..  ...+.|||++...+..+.|.|||||||++++     +|+||+|||...|+   .+
T Consensus       131 ~~~l~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p  203 (223)
T 1lo6_A          131 PDTIQCAYIHLVSREECEHAYPG--QITQNMLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKP  203 (223)
T ss_dssp             CSBCEEEEEEEECHHHHHHHSTT--TCCTTEEEEECTTTCCBCCTTTTTCEEEETT-----EEEEEEEECCSSCCCSSSC
T ss_pred             CceeeEEEEEEeCHHHhhhhhCC--CCCCCeEEeecCCCCCeeccccCCCcEEeCC-----EEEEEEeeCCCCCCCCCCC
Confidence            46799999999999999998754  3457999999876668999999999999842     59999999954575   36


Q ss_pred             cccccccceecCCccccC
Q psy16044        252 IRYSHRQPRLINGKESIR  269 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~~  269 (436)
                      .+|++|.+|..||.+.+.
T Consensus       204 ~vyt~V~~~~~WI~~~i~  221 (223)
T 1lo6_A          204 GVYTNVCRYTNWIQKTIQ  221 (223)
T ss_dssp             EEEEEGGGGHHHHHHHHC
T ss_pred             cEEEEHHHHHHHHHHHhc
Confidence            799999999999987654

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=99.65  E-value=1.6e-16  Score=142.21  Aligned_cols=87  Identities=28%  Similarity=0.518  Sum_probs=73.2

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~  252 (436)
                      +..|++..+++++.+.|+..+..  ...+.|||++...+..+.|.|||||||+++.     +|+||+|||.+|+  +.+.
T Consensus       136 ~~~l~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~C~~~~~p~  208 (228)
T 1fxy_A          136 PDELQCLDAPVLSQAKCEASYPG--KITSNMFCVGFLEGGKDSCQGDSGGPVVCNG-----QLQGVVSWGDGCAQKNKPG  208 (228)
T ss_dssp             CSSCEEEEEEBCCHHHHHHHSTT--TCCTTEEEESCTTCSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSBTTBCE
T ss_pred             CccceEEEEEEeCHHHhHhhcCC--CCCCCEEEeccCCCCCccccCccccceEECC-----EEEEEEEECCCCCCCCCCE
Confidence            45799999999999999998754  3456899998766668999999999999852     6999999998743  2468


Q ss_pred             ccccccceecCCcccc
Q psy16044        253 RYSHRQPRLINGKESI  268 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~  268 (436)
                      +|++|.+|..||.+.+
T Consensus       209 vyt~V~~y~~WI~~~~  224 (228)
T 1fxy_A          209 VYTKVYNYVKWIKNTI  224 (228)
T ss_dssp             EEEEGGGGHHHHHHHH
T ss_pred             EEEEhHHHHHHHHHHH
Confidence            9999999999998765

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=99.65  E-value=1.8e-16  Score=142.85  Aligned_cols=106  Identities=28%  Similarity=0.559  Sum_probs=88.2

Q ss_pred             CCcEEEEecCccCCCC-CccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcE
Q psy16044        157 KQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW  235 (436)
Q Consensus       157 ~~~~~~~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~  235 (436)
                      +..++++|||.+...+ ..+..|+++.+++++.++|+..+...  ..+.|||++...+..++|.|||||||+++.     
T Consensus       126 ~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~--~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----  198 (238)
T 1spj_A          126 GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQK--VTDFMLCVGHLEGGKDTCVGDSGGPLMCDG-----  198 (238)
T ss_dssp             TCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHCSSC--CCTTEEEEECTTCSSBCCTTCTTCEEEETT-----
T ss_pred             CCEEEEEecCCCCCCCCCCcCcccEEEEeecCHHHhhhhccCC--CCCCeEEeeCCCCCCCCCCCCCCCcEEEcC-----
Confidence            5679999999887554 45678999999999999999887543  467999999866668999999999999842     


Q ss_pred             EEEEEEeEcCCCCC---CCcccccccceecCCccccC
Q psy16044        236 YLAGITSFGSGYCG---VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       236 ~l~GI~S~g~~~C~---~~~~y~~v~~~~~~~~~~~~  269 (436)
                      +|+||+|||...|+   .+.+|++|.+|..||.+.+.
T Consensus       199 ~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~  235 (238)
T 1spj_A          199 VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA  235 (238)
T ss_dssp             EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHhh
Confidence            79999999954465   46799999999999987653

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=99.64  E-value=1.9e-16  Score=142.77  Aligned_cols=92  Identities=29%  Similarity=0.516  Sum_probs=77.1

Q ss_pred             cccceeeeeeccchhhhhhhcCCC-cCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDS-VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---  250 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~-~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---  250 (436)
                      +..|+...+.+++.+.|+..+... ....+.|||++...+..++|.|||||||+++.     .|+||+|||.+.|+.   
T Consensus       136 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~  210 (238)
T 4e7n_A          136 PDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNG-----QFQGIASWGDDPCAQPHK  210 (238)
T ss_dssp             CSSCEEEEEEEECGGGGTTTCGGGCCCSCCSEEEEECTTCSCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTC
T ss_pred             CccceEeeccccCHHHHhhhcccccCCCCCCeEEeCCCCCCCccCCCCCCcceEECC-----EEEEEEEEeCCCCCCCCC
Confidence            457899999999999999887531 34567999999877778999999999999853     399999999886754   


Q ss_pred             CcccccccceecCCccccCCC
Q psy16044        251 GIRYSHRQPRLINGKESIRGA  271 (436)
Q Consensus       251 ~~~y~~v~~~~~~~~~~~~~~  271 (436)
                      +.+|++|.+|..||.+.+...
T Consensus       211 p~vyt~V~~~~~WI~~~i~~~  231 (238)
T 4e7n_A          211 PAAYTKVFDHLDWIENIIAGN  231 (238)
T ss_dssp             CEEEEESGGGHHHHHHHHTTC
T ss_pred             CeEEEEhHHHHHHHHHHHhcC
Confidence            679999999999999877643

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=99.64  E-value=2.2e-16  Score=142.23  Aligned_cols=104  Identities=34%  Similarity=0.568  Sum_probs=86.8

Q ss_pred             cEEEEecCccCCCCCc-cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEE
Q psy16044        159 QCVATGWGRVKPKGDL-VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL  237 (436)
Q Consensus       159 ~~~~~GwG~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l  237 (436)
                      .++++|||.+...+.. +..|+++.+++++.+.|...+..  ...+.||||+...+..++|.|||||||+++.     +|
T Consensus       127 ~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l  199 (237)
T 2zch_P          127 TCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQ--KVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG-----VL  199 (237)
T ss_dssp             EEEEEESCCSSSSSCCCCSBCEEEEEEEECHHHHHHHCSS--BCCTTEEEEECTTCSCBCCTTCTTCEEESSS-----SE
T ss_pred             EEEEEeCCccCCCCCcCCcccEEeEEEEeCHHHhcccccC--CCCceEEeecCCCCCCcccCCCccCeEEECC-----EE
Confidence            5789999998755443 67899999999999999988754  3456999999876678999999999999853     69


Q ss_pred             EEEEeEcCCCCC---CCcccccccceecCCccccC
Q psy16044        238 AGITSFGSGYCG---VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       238 ~GI~S~g~~~C~---~~~~y~~v~~~~~~~~~~~~  269 (436)
                      +||+|||...|+   .+.+|++|.+|..||.+.+.
T Consensus       200 ~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  234 (237)
T 2zch_P          200 QGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV  234 (237)
T ss_dssp             EEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence            999999985564   46899999999999987654

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.64  E-value=2.8e-16  Score=140.10  Aligned_cols=87  Identities=32%  Similarity=0.571  Sum_probs=72.5

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~  252 (436)
                      +..|+++.+++++.+.|+..+..  ...+.|||++...+..++|.|||||||+++.     +|+||+|||.+|+  +.+.
T Consensus       132 ~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~GI~S~g~~C~~~~~p~  204 (223)
T 3mfj_A          132 PDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-----KLQGIVSWGSGCAQKNKPG  204 (223)
T ss_dssp             CSSCEEEEEEBCCHHHHHHHSTT--TCCTTEEEESCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSBTTBCE
T ss_pred             cchheEEEEEEeCHHHhhhhhcC--cCCCCEEEccCCCCCCCcCCCCcccceEECC-----EEEEEEEECCCCCCCCCCe
Confidence            35699999999999999988754  3456999998766668999999999999842     5999999998743  2468


Q ss_pred             ccccccceecCCcccc
Q psy16044        253 RYSHRQPRLINGKESI  268 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~  268 (436)
                      +|++|.+|..||.+.+
T Consensus       205 vyt~V~~~~~WI~~~i  220 (223)
T 3mfj_A          205 VYTKVCNYVSWIKQTI  220 (223)
T ss_dssp             EEEEGGGGHHHHHHHH
T ss_pred             EEEEHHHhHHHHHHHH
Confidence            9999999999998754

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=99.64  E-value=3.4e-16  Score=141.03  Aligned_cols=106  Identities=30%  Similarity=0.569  Sum_probs=87.2

Q ss_pred             CCcEEEEecCccCCC-CCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcE
Q psy16044        157 KQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW  235 (436)
Q Consensus       157 ~~~~~~~GwG~~~~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~  235 (436)
                      +..++++|||.+... ...+..|+++.+++++.+.|...+..  ...+.||||+...+..++|.|||||||+++   +  
T Consensus       125 ~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--  197 (237)
T 1ao5_A          125 GSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQ--KVTDVMLCAGEMGGGKDTCRDDSGGPLICD---G--  197 (237)
T ss_dssp             TCEEEEEESCCSSCC-CCCCSBCEEEEEEEECHHHHHHHCSS--CCCTTEEEEECTTCSCBCCTTCTTCEEEET---T--
T ss_pred             CCEEEEEECCccCCCCCCCCCcccEEEEEecChhHhhhhhcc--cCCCCEEEEccCCCCCCCCCCCCcceEEEC---C--
Confidence            467899999988765 45677899999999999999998754  346799999854555899999999999984   2  


Q ss_pred             EEEEEEeEcCCCCCC---CcccccccceecCCccccC
Q psy16044        236 YLAGITSFGSGYCGV---GIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       236 ~l~GI~S~g~~~C~~---~~~y~~v~~~~~~~~~~~~  269 (436)
                      +|+||+|||...|+.   +.+|++|..|..||.+.+.
T Consensus       198 ~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~  234 (237)
T 1ao5_A          198 ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM  234 (237)
T ss_dssp             EEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHH
T ss_pred             EEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence            699999999544653   6799999999999987653

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=99.63  E-value=3.3e-16  Score=140.04  Aligned_cols=87  Identities=25%  Similarity=0.452  Sum_probs=71.6

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CC
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VG  251 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~  251 (436)
                      +..|++..+++++.+.|+..+..  ...+.|||++.. ...+.|.|||||||++..     +|+||+|||...|+   .+
T Consensus       135 ~~~L~~~~~~i~~~~~C~~~~~~--~~~~~~~Ca~~~-~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p  206 (227)
T 2psx_A          135 PKVLQCLNISVLSQKRCEDAYPR--QIDDTMFCAGDK-AGRDSCQGDSGGPVVCNG-----SLQGLVSWGDYPCARPNRP  206 (227)
T ss_dssp             CSBCEEEEEEBCCHHHHHHHSTT--TCCTTEEEECCS-TTCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCC
T ss_pred             CchheEEEEEecCHhHhhhhcCC--CCCCCEEcccCC-CCCccCCCCCCcceeeCC-----EEEEEEeecCCCCCCCCCC
Confidence            45799999999999999988764  346799999863 347899999999999853     69999999954454   46


Q ss_pred             cccccccceecCCccccC
Q psy16044        252 IRYSHRQPRLINGKESIR  269 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~~  269 (436)
                      .+|++|..|..||.+.+.
T Consensus       207 ~vyt~V~~~~~WI~~~~~  224 (227)
T 2psx_A          207 GVYTNLCKFTKWIQETIQ  224 (227)
T ss_dssp             EEEEEGGGCHHHHHHHHH
T ss_pred             cEEEEHHHhHHHHHHHHh
Confidence            799999999999987653

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=99.63  E-value=3e-16  Score=141.19  Aligned_cols=106  Identities=32%  Similarity=0.615  Sum_probs=88.1

Q ss_pred             CCcEEEEecCccCCC-CCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcE
Q psy16044        157 KQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW  235 (436)
Q Consensus       157 ~~~~~~~GwG~~~~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~  235 (436)
                      +..|+++|||.+... ...+..|+++.+++++.+.|...+..  ...+.||||+...+..++|.|||||||+++   +  
T Consensus       123 ~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--  195 (235)
T 1ton_A          123 GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKD--NVTDVMLCAGEMEGGKDTCAGDSGGPLICD---G--  195 (235)
T ss_dssp             TCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGCGGGGST--TGGGGEEEEECTTCSCBCCTTCTTCEEEET---T--
T ss_pred             CCEEEEEecCCCCCCCCccCccceEEEEEEeCHHHHHHHhcC--cCCCCeEeeccCCCCCcCCCCCCccccEEC---C--
Confidence            578999999998754 44567899999999999999998864  345689999976666899999999999984   2  


Q ss_pred             EEEEEEeEcCCCCC---CCcccccccceecCCccccC
Q psy16044        236 YLAGITSFGSGYCG---VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       236 ~l~GI~S~g~~~C~---~~~~y~~v~~~~~~~~~~~~  269 (436)
                      +|+||+|||...|+   .+.+|++|.+|..||.+.+.
T Consensus       196 ~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~  232 (235)
T 1ton_A          196 VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK  232 (235)
T ss_dssp             EEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHHc
Confidence            69999999965575   46799999999999987653

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=99.63  E-value=3.1e-16  Score=140.96  Aligned_cols=90  Identities=29%  Similarity=0.381  Sum_probs=76.1

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---C
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---G  251 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~  251 (436)
                      +..|+...+.+++.+.|+..+.. ....+.|||++...+..++|.|||||||+++.     .|+||+|||.+.|+.   +
T Consensus       134 ~~~l~~~~~~~~~~~~C~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~-----~l~Gi~S~g~~~C~~~~~p  207 (234)
T 3s9c_A          134 PDVPHCTNIFIVKHKWCEPLYPW-VPADSRTLCAGILKGGRDTCHGDSGGPLICNG-----EMHGIVAGGSEPCGQHLKP  207 (234)
T ss_dssp             CSSCEEEEEEEECGGGTTTTCTT-SCTTSSEEEEECTTSSCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCC
T ss_pred             CccccccceEecCHHHhhhcccC-CCCCcceEEeecCCCCCccCCCCCCCeEEEeC-----CcEEEEEEeCCCCCCCCCC
Confidence            45789999999999999988753 34567999999877778999999999999853     399999999886764   5


Q ss_pred             cccccccceecCCccccCC
Q psy16044        252 IRYSHRQPRLINGKESIRG  270 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~~~  270 (436)
                      .+|++|.+|..||.+.+..
T Consensus       208 ~vyt~V~~y~~WI~~~i~~  226 (234)
T 3s9c_A          208 AVYTKVFDYNNWIQSIIAG  226 (234)
T ss_dssp             EEEEEGGGGHHHHHHHHHT
T ss_pred             cEEEEhHHhHHHHHHHHcC
Confidence            7999999999999877653

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=99.62  E-value=2.9e-16  Score=153.34  Aligned_cols=93  Identities=29%  Similarity=0.447  Sum_probs=77.2

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCC---CCCCCccCCCCCeeeeEe-cCCcEEEEEEEeEcCCCCC-
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD---GFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGYCG-  249 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~---~~~~~C~gDsGgPl~~~~-~~~~~~l~GI~S~g~~~C~-  249 (436)
                      +..|+++.+.+++.+.|...+..  ..++.||||+...   ...++|+|||||||++.. .+++|+|+||+|||.+|+. 
T Consensus       322 ~~~L~~~~v~ii~~~~C~~~~~~--~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~G~~C~~~  399 (424)
T 3nxp_A          322 PSVLQVVNLPIVERPVCKDSTRI--RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD  399 (424)
T ss_dssp             CSBCEEEEEEBCCHHHHHHTCSS--CCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECCSSCTTTC
T ss_pred             CccceEEEeeEEcHHHhhhhccC--cCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEeCCCCCCC
Confidence            56799999999999999988753  4567999998643   236899999999999975 3789999999999988442 


Q ss_pred             -CCcccccccceecCCccccC
Q psy16044        250 -VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       250 -~~~~y~~v~~~~~~~~~~~~  269 (436)
                       .+.+|++|..|..||.+++.
T Consensus       400 ~~pgVyT~Vs~y~~WI~~~i~  420 (424)
T 3nxp_A          400 GKYGFYTHVFRLKKWIQKVID  420 (424)
T ss_dssp             CSCEEEEECTTCHHHHHHHHH
T ss_pred             CCCEEEEEHHHHHHHHHHHHH
Confidence             36799999999999987653

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.62  E-value=9.3e-16  Score=137.40  Aligned_cols=148  Identities=20%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             CeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCC
Q psy16044         55 PHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRP  133 (436)
Q Consensus        55 ~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~  133 (436)
                      .+.|+|+||+++ ||||+|||+.+.       ..+.|.++..         +.+.++-+..+     ..+|||||||+.+
T Consensus        55 ~~~gsG~iI~~~g~ILTnaHvv~~~-------~~i~V~~~~g---------~~~~a~vv~~d-----~~~DlAllkl~~~  113 (239)
T 1l1j_A           55 ASLGSGFIFDPEGYILTNYHVVGGA-------DNITVTMLDG---------SKYDAEYIGGD-----EELDIAVIKIKAS  113 (239)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHSSC-------SSCEEECTTS---------CEEEBCCCEEE-----TTTTEEEEEBCCS
T ss_pred             CceEEEEEEeCCCEEEEChHHhCCC-------CEEEEEECCC---------CEEEEEEEEEc-----CCCCEEEEEEcCC
Confidence            467999999986 999999998652       3567777631         12233322222     3589999999987


Q ss_pred             CCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCC
Q psy16044        134 TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDG  213 (436)
Q Consensus       134 ~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~  213 (436)
                      +    ..+++++|+..  ..+..++.++++||+.....        ....-+++...|.............++|+.    
T Consensus       114 ~----~~~~~~~l~~s--~~~~~G~~v~~iG~p~g~~~--------~vt~Givs~~~r~~~~~~~~~~~~~~i~td----  175 (239)
T 1l1j_A          114 D----KKFPYLEFGDS--DKVKIGEWAIAIGNPLGFQH--------TVTVGVVSATNRRIPKPDGSGYYVGLIQTD----  175 (239)
T ss_dssp             S----SCCCCCEECCG--GGCCTTCEEEEEECTTSSSC--------EEEEEEEEEEEEEEECTTSSCEEEEEEEES----
T ss_pred             C----CCCceEEecCc--cCCccccEEEEEECCCCCCC--------cEEEEEEeccccccccCCCccccCCEEEEC----
Confidence            5    23778899863  23457899999999764311        111222222222100000000123678874    


Q ss_pred             CCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        214 FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       214 ~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                       ...|.|||||||+..  +|  .|+||+|++..
T Consensus       176 -a~i~~G~SGGPLv~~--~G--~vvGI~s~~~~  203 (239)
T 1l1j_A          176 -AAINPGNSGGPLLNI--HG--EVIGINTAIVN  203 (239)
T ss_dssp             -SCCCTTTTTSEEECS--SS--EEEEEECCCSC
T ss_pred             -CCCCCCCccHHhccC--CC--eEEEEEeeeec
Confidence             678999999999953  33  49999999864

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.62  E-value=5.7e-16  Score=138.20  Aligned_cols=88  Identities=32%  Similarity=0.557  Sum_probs=74.4

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~  252 (436)
                      +..|++..+.+++.+.|+..+..  ...+.|||++...+..+.|.|||||||++..     +|+||+|||.+|+.  .+.
T Consensus       132 ~~~l~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~~~~p~  204 (223)
T 4i8h_A          132 PDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-----KLQGIVSWGSGCAQKNKPG  204 (223)
T ss_dssp             CSSCEEEEEEBCCHHHHHHHSTT--TCCTTEEEESCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSCTTCCE
T ss_pred             cccceEEEeeecCHHHHHHhhCC--CCCCCeEeccCCCCCCccCCCCCCCcEEECC-----EEEEEEEcCCCCCCCCCCe
Confidence            35699999999999999998864  3456999998777778999999999999853     69999999998553  367


Q ss_pred             ccccccceecCCccccC
Q psy16044        253 RYSHRQPRLINGKESIR  269 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~~  269 (436)
                      +|++|.+|..||.+.+.
T Consensus       205 vyt~v~~~~~WI~~~i~  221 (223)
T 4i8h_A          205 VYTKVCNYVSWIKQTIA  221 (223)
T ss_dssp             EEEEGGGGHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHh
Confidence            99999999999987653

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.62  E-value=4.4e-15  Score=132.63  Aligned_cols=166  Identities=18%  Similarity=0.168  Sum_probs=98.8

Q ss_pred             CCCcceEEEeeeccC--C--CCCCeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeee
Q psy16044         36 GAWPWQVSLQVLHPR--L--GLMPHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVE  110 (436)
Q Consensus        36 ~~~Pw~v~i~~~~~~--~--~~~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~  110 (436)
                      .--|.+|.|......  .  ......++|+||+++ ||||||||+.+       ...+.|.++..         ..+.++
T Consensus        39 ~~~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~~G~VLTaaHvv~~-------~~~i~V~~~~g---------~~~~a~  102 (231)
T 3tjo_A           39 KIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN-------KHRVKVELKNG---------ATYEAK  102 (231)
T ss_dssp             HHGGGEEEEEEEEECTTSSCEEEEEEEEEEECSTTCEEEEETTTCCS-------SSEEEEECTTS---------CEEEEE
T ss_pred             HhcCcEEEEEEEeccccCCCccccceEEEEEEeCCCEEEEchhcccC-------CceEEEEcCCC---------CEEEEE
Confidence            346888998764421  0  011257999999998 99999999965       24566665421         234444


Q ss_pred             EEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhh
Q psy16044        111 RIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  190 (436)
Q Consensus       111 ~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~  190 (436)
                      .+..++.     +|||||||+.+..     +.++.|+..  ..+..+..++++||+....     ..+....+.-.....
T Consensus       103 v~~~d~~-----~DlAlL~l~~~~~-----~~~~~l~~~--~~~~~G~~v~~~G~p~g~~-----~~~~~g~vs~~~~~~  165 (231)
T 3tjo_A          103 IKDVDEK-----ADIALIKIDHQGK-----LPVLLLGRS--SELRPGEFVVAIGSPFSLQ-----NTVTTGIVSTTQRGG  165 (231)
T ss_dssp             EEEEETT-----TTEEEEECCCSSC-----CCCCCBCCG--GGCCTTCEEEEEEEEETTE-----EEEEEEEEEECC---
T ss_pred             EEEecCC-----CCEEEEEecCCCC-----CCceecCCc--CCCCCCCEEEEEECCCCCC-----CceeeEEEeeccccc
Confidence            5555654     7999999997633     567777653  2355789999999985321     111111121111111


Q ss_pred             hhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       191 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      +...+.   .....++++.     ...|.|||||||+..  +|+  |+||+||+..
T Consensus       166 ~~~~~~---~~~~~~i~~d-----a~i~~G~SGGPLv~~--~G~--vVGI~s~~~~  209 (231)
T 3tjo_A          166 KELGLR---NSDMDYIQTD-----AIINYGNAGGPLVNL--DGE--VIGINTLKVT  209 (231)
T ss_dssp             -------------CCEEES-----SCCCTTTTTSEEECT--TSC--EEEEEEEEEE
T ss_pred             cccccC---CCcccEEEEc-----CCcCCCCchhHeecC--CCe--EEEEEeEEec
Confidence            111000   0111345543     568899999999942  343  9999999753

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=99.62  E-value=4.9e-16  Score=138.61  Aligned_cols=88  Identities=33%  Similarity=0.482  Sum_probs=73.0

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CC
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VG  251 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~  251 (436)
                      +..|+++.+++++.++|+..+..  ...+.|||++...+..+.|.|||||||+++.     +|+||+|||...|+   .+
T Consensus       131 ~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p  203 (224)
T 2qxi_A          131 PSDLMCVDVKLISPQDCTKVYKD--LLENSMLCAGIPDSKKNACNGDSGGPLVCRG-----TLQGLVSWGTFPCGQPNDP  203 (224)
T ss_dssp             CSBCEEEEEEEECHHHHHHHHGG--GCCTTEEEEECTTCCCBCCTTCTTCEEEETT-----EEEEEEEECCSSSCCTTCC
T ss_pred             ChhheEEEeeecCHHHhhHHhcC--cCCCCeEEecCCCCCCccCCCCccccEEECC-----EEEEEEEeCCCCCCCCCCC
Confidence            35699999999999999988753  3456999999766668999999999999842     59999999954575   36


Q ss_pred             cccccccceecCCccccC
Q psy16044        252 IRYSHRQPRLINGKESIR  269 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~~  269 (436)
                      .+|++|.+|..||.+.+.
T Consensus       204 ~vyt~V~~~~~WI~~~~~  221 (224)
T 2qxi_A          204 GVYTQVCKFTKWINDTMK  221 (224)
T ss_dssp             EEEEEGGGSHHHHHHHHH
T ss_pred             eEEEEHHHHHHHHHHHHh
Confidence            799999999999987653

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=99.61  E-value=2.6e-16  Score=141.78  Aligned_cols=105  Identities=29%  Similarity=0.561  Sum_probs=87.3

Q ss_pred             CCcEEEEecCccC-CCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcE
Q psy16044        157 KQQCVATGWGRVK-PKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW  235 (436)
Q Consensus       157 ~~~~~~~GwG~~~-~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~  235 (436)
                      +..++++|||.+. ..+..+..|+++.+++++.+.|+..+..  ...+.|||++...+..++|.|||||||+++   +  
T Consensus       125 ~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--  197 (237)
T 1gvz_A          125 GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPE--KMTEFVLCATHRDDSGSICLGDSGGALICD---G--  197 (237)
T ss_dssp             TCEEEEEEEECSCTTTCSEEEEEEEEEEEEECGGGGCSSCGG--GCCTTEEEEECSSTTCEECGGGTTCEEEET---T--
T ss_pred             CCEEEEECCCcccCCCCCCCCccEEEEEeEeChhHhhhhhhh--cCCCceEEEeeCCCCCccCCCCccCcEeeC---C--
Confidence            5789999999874 3455677899999999999999987753  346799999986666889999999999984   2  


Q ss_pred             EEEEEEeEcCCCCC---CCcccccccceecCCcccc
Q psy16044        236 YLAGITSFGSGYCG---VGIRYSHRQPRLINGKESI  268 (436)
Q Consensus       236 ~l~GI~S~g~~~C~---~~~~y~~v~~~~~~~~~~~  268 (436)
                      +|+||+|||...|+   .+.+|++|..|..||.+.+
T Consensus       198 ~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  233 (237)
T 1gvz_A          198 VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETI  233 (237)
T ss_dssp             EEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHH
T ss_pred             EEEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHHH
Confidence            69999999984475   4679999999999998765

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.59  E-value=9.1e-15  Score=137.73  Aligned_cols=169  Identities=17%  Similarity=0.142  Sum_probs=101.0

Q ss_pred             CCCcceEEEeeeccCCCCCCeeeEEEEecC-CEEEecCCCcCCCCCC--CCCCcceEEEeccccCCccCCceEEEeeeEE
Q psy16044         36 GAWPWQVSLQVLHPRLGLMPHWCGAVLIHP-SWVVTAAHCIHNDIFS--LPIPELWTAVLGDWDRTEEEKSEVRIPVERI  112 (436)
Q Consensus        36 ~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~-~~VLTAAhC~~~~~~~--~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i  112 (436)
                      ...|++|.|......   ....|+|+||++ .||||||||+.+....  ......+.|.++..         +.+.++-+
T Consensus        14 ~~~~svV~I~~~~~~---~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g---------~~~~a~vv   81 (324)
T 1y8t_A           14 KVVPSVVMLETDLGR---QSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDG---------RTAPFTVV   81 (324)
T ss_dssp             HHGGGEEEEEEEC-------CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEETTC---------CEECEEEE
T ss_pred             HhcCcEEEEEEEccC---CCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEeCCC---------CEEEEEEE
Confidence            457999999865321   157899999998 6999999999653100  00023567777631         22333322


Q ss_pred             EeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhh
Q psy16044        113 RVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCR  192 (436)
Q Consensus       113 ~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~  192 (436)
                      ..+     ..+|||||||+.+.     .++|++|+..  ..+..+..++++||......     ..   ...+++...+.
T Consensus        82 ~~d-----~~~DlAllkl~~~~-----~~~~~~l~~~--~~~~~G~~v~~~G~p~g~~~-----~~---~~G~vs~~~~~  141 (324)
T 1y8t_A           82 GAD-----PTSDIAVVRVQGVS-----GLTPISLGSS--SDLRVGQPVLAIGSPLGLEG-----TV---TTGIVSALNRP  141 (324)
T ss_dssp             ECC-----TTTTEEEEEECSCC-----SCCCCEECCS--TTCCTTCEEEEEECGGGCTT-----EE---EEEEEEEEEEE
T ss_pred             EeC-----CCCCEEEEEECCCC-----CCceEEecCc--ccCCCCCEEEEEEcCCCCCC-----cE---eeeEEeecccc
Confidence            222     35899999999762     3678899763  33557899999999543211     00   11111111110


Q ss_pred             hh----cCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        193 DK----YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       193 ~~----~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      ..    .+. ......++|+.     ...|.|||||||+..  +|  .|+||+|++..
T Consensus       142 ~~~~~~~g~-~~~~~~~i~~d-----~~~~~G~SGGPlv~~--~G--~vvGI~s~~~~  189 (324)
T 1y8t_A          142 VSTTGEAGN-QNTVLDAIQTD-----AAINPGNSGGALVNM--NA--QLVGVNSAIAT  189 (324)
T ss_dssp             ECC--------CCCEEEEEEC-----SCCCTTCTTEEEECT--TS--EEEEEEEEECC
T ss_pred             cccccccCc-ccccCCEEEEc-----CCCCCCCccCcEECC--CC--eEEEEEeeecc
Confidence            00    000 01123688884     678999999999963  34  59999999754

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=99.59  E-value=3.9e-16  Score=140.87  Aligned_cols=89  Identities=31%  Similarity=0.500  Sum_probs=70.0

Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---  250 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---  250 (436)
                      .+..|+++.+++++.++|+..+..  ...+.|||++...+..+.|.|||||||+++   +  +|+||+|||...|+.   
T Consensus       146 ~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~--~l~GI~S~g~~~C~~~~~  218 (240)
T 1sgf_A          146 YPDDLQCVNLKLLPNEDCDKAHEM--KVTDAMLCAGEMDGGSYTCEHDSGGPLICD---G--ILQGITSWGPEPCGEPTE  218 (240)
T ss_dssp             ------CEEEEEECTHHHHTTCSS--BCCTTEEEEEECSSSEEECCCCTTCEEEET---T--EEEEEECCCCSSCCCSSC
T ss_pred             CCccccEEeeeEeCHHHhhhhhCC--CcCCCeEeEccCCCCCCCCCCCCcCcEEEc---c--EEEEEEEECCCCCCCCCC
Confidence            346799999999999999987753  346799999986666789999999999984   2  699999999655753   


Q ss_pred             CcccccccceecCCccccC
Q psy16044        251 GIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       251 ~~~y~~v~~~~~~~~~~~~  269 (436)
                      +.+|++|..|..||.+.+.
T Consensus       219 p~vyt~V~~~~~WI~~~~~  237 (240)
T 1sgf_A          219 PSVYTKLIKFSSWIRETMA  237 (240)
T ss_dssp             CEEEEESGGGHHHHHHHHH
T ss_pred             CeEEEeHHHHHHHHHHHHh
Confidence            6799999999999987654

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.59  E-value=4.8e-16  Score=141.20  Aligned_cols=119  Identities=17%  Similarity=0.164  Sum_probs=80.3

Q ss_pred             ccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCcc--ccceEEEEEeeCcccccc---c
Q psy16044        279 TSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV--SKLRQIRVPLHNISVCRD---K  353 (436)
Q Consensus       279 ~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~--~~l~~~~~~~~~~~~C~~---~  353 (436)
                      ...||||||||++|+.                    .+..++++|||++.......  ..++...++.++...|..   .
T Consensus       109 ~~~nDIALLrL~~~v~--------------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  168 (268)
T 1arb_A          109 YATSDFTLLELNNAAN--------------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVA  168 (268)
T ss_dssp             ETTTTEEEEEESSCCC--------------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCCEEEC
T ss_pred             CCCCceEEEEecCCCC--------------------CCCceEEeCcCccCCCCCcceeeccCCcccEEEEeecccccccc
Confidence            4579999999999742                    24468999999886543211  112223444555555642   2


Q ss_pred             cCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCC--CCCeEEEeCcccHH
Q psy16044        354 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKS--GYPDVYTKLSFYLP  423 (436)
Q Consensus       354 ~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~--~~p~v~t~V~~~~~  423 (436)
                      +..  .+.+.|+|++...+..++|.|||||||++.  +  ++|+||+|||. .|...  ..|++||||+.|.+
T Consensus       169 ~~~--~~~~~~iCag~~~~~gdtC~gdsGgPl~~~--~--~~~~Gi~s~g~~~C~~~~~~~p~vyt~v~~~~~  235 (268)
T 1arb_A          169 WGG--GAGTTHLNVQWQPSGGVTEPGSSGSPIYSP--E--KRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWT  235 (268)
T ss_dssp             TTS--SSCSSEEEEECCTTSCCCCTTCTTCEEECT--T--SCEEEEEEECSCCTTCCGGGSEEEEEEHHHHHH
T ss_pred             ccc--cccCCeEEEeeecCCCCCccCcccCCcEee--C--CEEEEEEeecCcccCCCCCCCCceEEEeeeeec
Confidence            322  356899999643112269999999999973  2  35999999997 68765  37999999986654

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.56  E-value=1.5e-14  Score=137.42  Aligned_cols=169  Identities=19%  Similarity=0.185  Sum_probs=103.9

Q ss_pred             CCcceEEEeeeccCCCCC--------CeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEE
Q psy16044         37 AWPWQVSLQVLHPRLGLM--------PHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRI  107 (436)
Q Consensus        37 ~~Pw~v~i~~~~~~~~~~--------~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~  107 (436)
                      --|-+|.|.........+        ...++|+||+++ ||||||||+.+       ...+.|.+...         ..+
T Consensus        26 ~~~sVV~I~~~~~~~~~~~~~~~~~~~g~GSG~iI~~~G~IlT~aHvv~~-------~~~i~V~~~~g---------~~~   89 (348)
T 3qo6_A           26 NTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRG-------ASDLRVTLADQ---------TTF   89 (348)
T ss_dssp             HGGGEEEEEEEEEEECSSSCCEEEEEEEEEEEEEEETTTEEEECHHHHTT-------CSEEEEECTTS---------CEE
T ss_pred             hCCCEEEEEEEeecccccccccccccCceEEEEEEeCCCEEEECHHHhCC-------CcEEEEEECCC---------CEE
Confidence            346777776532211110        246999999998 99999999865       24566665421         223


Q ss_pred             eeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccc
Q psy16044        108 PVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN  187 (436)
Q Consensus       108 ~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~  187 (436)
                      ..+.+..++.     +|||||||+.|.    ..++|++|+..  ..+..+..++++||+.....     .+....+..+.
T Consensus        90 ~a~~v~~d~~-----~DlAlLkl~~~~----~~~~~i~l~~s--~~~~~G~~v~~iG~p~g~~~-----~~~~g~vs~~~  153 (348)
T 3qo6_A           90 DAKVVGFDQD-----KDVAVLRIDAPK----NKLRPIPVGVS--ADLLVGQKVFAIGNPFGLDH-----TLTTGVISGLR  153 (348)
T ss_dssp             EEEEEEEEGG-----GTEEEEECCCCG----GGCCCCCBCCS--TTCCTTCEEEEEECGGGCTT-----EEEEEEEEEEE
T ss_pred             EEEEEEEcCc-----CCEEEEEEcCCC----CCceeEEecCc--ccCCCCCEEEEEECCCCCCC-----cEeEEEEEeec
Confidence            4444455554     699999999863    24788888764  33567899999999865422     22222233222


Q ss_pred             hhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC
Q psy16044        188 ISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG  249 (436)
Q Consensus       188 ~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~  249 (436)
                      ...|......   ....+++..     ...|.|||||||+..  +|+  |+||+|++...++
T Consensus       154 ~~~~~~~~~~---~~~~~i~~d-----a~i~~G~SGGPLvn~--~G~--vvGI~s~~~~~~~  203 (348)
T 3qo6_A          154 REISSAATGR---PIQDVIQTD-----AAINPGNSGGPLLDS--SGT--LIGINTAIYSPSG  203 (348)
T ss_dssp             EEECCSSSSS---CEEEEEEEC-----SCCCTTCTTCEEECT--TSC--EEEEEEEEECSSS
T ss_pred             cccccccCCC---cccCEEEEe-----CCcCCCCcHHHhhCC--CCe--EEEEEEeeecCCC
Confidence            2222211110   001234432     578999999999953  443  9999999876554

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.55  E-value=2e-14  Score=135.14  Aligned_cols=164  Identities=18%  Similarity=0.159  Sum_probs=103.4

Q ss_pred             CCcceEEEeeeccC--CC--CCCeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeE
Q psy16044         37 AWPWQVSLQVLHPR--LG--LMPHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVER  111 (436)
Q Consensus        37 ~~Pw~v~i~~~~~~--~~--~~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~  111 (436)
                      --|.+|.|......  .+  .....|+|+||+++ ||||+|||+.+.       ..+.|.++..         ..+.++-
T Consensus        24 ~~~sVV~I~~~~~~~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~~-------~~i~V~~~~g---------~~~~a~v   87 (325)
T 1lcy_A           24 TAPAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHVVADR-------RRVRVRLLSG---------DTYEAVV   87 (325)
T ss_dssp             HGGGEEEEEEEEEETTTTEEEEEEEEEEEEEETTTEEEECHHHHTTC-------SEEEEECTTS---------CEEEEEE
T ss_pred             hCCcEEEEEEEecCccCCCccccccEEEEEEeCCCEEEECHHHcCCC-------CEEEEEeCCC---------CEEEEEE
Confidence            35788888643211  11  11367999999998 999999999652       4567766531         1223322


Q ss_pred             EEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhh
Q psy16044        112 IRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  191 (436)
Q Consensus       112 i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C  191 (436)
                      +...     ..+||||||++.+.     .+.+++|+..  ..+..++.++++||+....        +.....+++...|
T Consensus        88 ~~~d-----~~~DlAllkl~~~~-----~~~~~~l~~~--~~~~~G~~v~~~G~p~~~~--------~~v~~G~vs~~~~  147 (325)
T 1lcy_A           88 TAVD-----PVADIATLRIQTKE-----PLPTLPLGRS--ADVRQGEFVVAMGSPFALQ--------NTITSGIVSSAQR  147 (325)
T ss_dssp             EEEE-----TTTTEEEEECCCSS-----CCCCCCBCCG--GGCCTTCEEEECCCTTSSS--------SCCEEEEBCSCSC
T ss_pred             EEEC-----CCCCEEEEEEcCCC-----CCceEEeccc--ccCCCCCEEEEEECCCCCC--------CcEEeEEEecccc
Confidence            2222     35899999998763     2567888763  2355789999999986432        1234455555555


Q ss_pred             hhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcC
Q psy16044        192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS  245 (436)
Q Consensus       192 ~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~  245 (436)
                      .............++|+.     ...|.|||||||+..  +|+  |+||++++.
T Consensus       148 ~~~~~g~~~~~~~~i~~d-----~~~~~G~SGGPl~~~--~G~--vVGI~s~~~  192 (325)
T 1lcy_A          148 PARDLGLPQTNVEYIQTD-----AAIDFGNAGGPLVNL--DGE--VIGVNTMKV  192 (325)
T ss_dssp             C---------CCCCEEES-----SCCSTTTTTSEEEET--TSC--EEEEEEEEE
T ss_pred             cccccCCCCCCCCEEEEc-----CCCCCCCccccEECC--CCE--EEEEEeEee
Confidence            421111011234789985     578999999999953  443  999999975

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.53  E-value=8e-14  Score=125.13  Aligned_cols=163  Identities=17%  Similarity=0.155  Sum_probs=101.9

Q ss_pred             CCCcceEEEeeeccCCC-----CCCeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEee
Q psy16044         36 GAWPWQVSLQVLHPRLG-----LMPHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPV  109 (436)
Q Consensus        36 ~~~Pw~v~i~~~~~~~~-----~~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v  109 (436)
                      .--|-+|.|........     .....++|+||+++ ||||+|||+.+.       ..+.|.+..         ...+..
T Consensus        28 ~~~~sVV~I~~~~~~~~~~~~~~~~~~GsG~ii~~~G~IlTaaHvv~~~-------~~~~V~~~~---------g~~~~a   91 (237)
T 3lgi_A           28 RAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDA-------DQIIVALQD---------GRVFEA   91 (237)
T ss_dssp             HHGGGEEEEEEECCTTTCTTSCCEEEEEEEEEEETTTEEEEEHHHHTTC-------SEEEEECTT---------SCEEEE
T ss_pred             HhCCcEEEEEEEecccCcccccccceEEEEEEEeCCCEEEEeeeecCCC-------CEEEEEeCC---------CCEEEE
Confidence            34688888876543211     01347999999998 999999999652       445665532         123445


Q ss_pred             eEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchh
Q psy16044        110 ERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  189 (436)
Q Consensus       110 ~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~  189 (436)
                      +.+..||.     +|||||||+.+..     +.++.|+..  ..+..+..++++||+.....     .+....+..+...
T Consensus        92 ~vv~~d~~-----~DlAll~l~~~~~-----~~~~~l~~~--~~~~~G~~v~~~G~p~~~~~-----~~~~g~vs~~~~~  154 (237)
T 3lgi_A           92 LLVGSDSL-----TDLAVLKINATGG-----LPTIPINAR--RVPHIGDVVLAIGNPYNLGQ-----TITQGIISATGRI  154 (237)
T ss_dssp             EEEEEETT-----TTEEEEECCCSSC-----CCCCCCCTT--CCCCTTBEEEEEECGGGSCS-----EEEEEEEEEECCS
T ss_pred             EEEEEcCC-----CCEEEEEecCCCC-----CceEeccCc--ccCCCCCEEEEEECCCCCCC-----cEEEEEEEecccc
Confidence            55566665     6999999987642     567777753  34567899999999864311     1222222222211


Q ss_pred             hhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        190 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       190 ~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      .+..      ......++..     ...|.|||||||+..  +|+  |+||+|++..
T Consensus       155 ~~~~------~~~~~~i~~d-----~~i~~G~SGGPlv~~--~G~--vvGI~s~~~~  196 (237)
T 3lgi_A          155 GLNP------TGRQNFLQTD-----ASINHGNSGGALVNS--LGE--LMGINTLSFD  196 (237)
T ss_dssp             SCCT------TSCSCCEEEC-----SCCCTTCTTCEEECT--TCC--EEEEECCCCC
T ss_pred             cccC------CCcCCEEEEc-----CccCCCCchHHeeCC--CCe--EEEEEeeeec
Confidence            1111      0112345543     567999999999953  443  9999999754

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.52  E-value=1.2e-13  Score=130.50  Aligned_cols=165  Identities=18%  Similarity=0.174  Sum_probs=96.8

Q ss_pred             CCcceEEEeeeccC--C--CCCCeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeE
Q psy16044         37 AWPWQVSLQVLHPR--L--GLMPHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVER  111 (436)
Q Consensus        37 ~~Pw~v~i~~~~~~--~--~~~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~  111 (436)
                      -.|.+|.|......  .  ......++|+||+++ ||||||||+.+       ...+.|.++..         ..+.++.
T Consensus        23 ~~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~~G~ILTaaHvv~~-------~~~i~V~~~~g---------~~~~a~~   86 (332)
T 3num_A           23 IAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN-------KHRVKVELKNG---------ATYEAKI   86 (332)
T ss_dssp             HGGGEEEEEEEEECTTSSCEEEEEEEEEEEEETTTEEEECTTTCCT-------TSEEEEEETTS---------CEEEEEE
T ss_pred             hcCcEEEEEEEeccccCCCcceeeeEEEEEEeCCCEEEEChHHcCC-------CCEEEEEECCC---------CEEEEEE
Confidence            35778888653211  0  011357999999998 99999999965       24566666431         2345566


Q ss_pred             EEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhh
Q psy16044        112 IRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  191 (436)
Q Consensus       112 i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C  191 (436)
                      +..||.     +|||||+|+.+..     +.++.|+..  ..+..+..++++||+.....     .+....+.......+
T Consensus        87 ~~~d~~-----~DlAlL~l~~~~~-----~~~~~l~~~--~~~~~G~~v~~~G~p~g~~~-----~~~~g~vs~~~~~~~  149 (332)
T 3num_A           87 KDVDEK-----ADIALIKIDHQGK-----LPVLLLGRS--SELRPGEFVVAIGSPFSLQN-----TVTTGIVSTTQRGGK  149 (332)
T ss_dssp             EEEETT-----TTEEEEEECCSSC-----CCCCCBCCT--TSCCTTCEEEEECC-----C-----CEEEEEEEEC-----
T ss_pred             EEecCC-----CCeEEEEEcCCCC-----CceeeecCc--ccCCCCCEEEEEECCCCCCc-----ceeeeEEEeeccccc
Confidence            677776     6999999997632     567777653  34567899999999864321     112222222222111


Q ss_pred             hhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       192 ~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      ...+..   ....+++..     ...|.|||||||+..  +|+  |+||+||+..
T Consensus       150 ~~~~~~---~~~~~i~~d-----~~i~~G~SGGPlv~~--~G~--vvGI~s~~~~  192 (332)
T 3num_A          150 ELGLRN---SDMDYIQTD-----AIINYGNAGGPLVNL--DGE--VIGINTLKVT  192 (332)
T ss_dssp             ------------CCEEES-----SCCCTTTTTSEEEET--TSC--EEEEEEEEEE
T ss_pred             ccCcCC---CcCCEEEEE-----CCcCCCCcHHHhhCC--CCc--EEEEEeeEec
Confidence            111110   111344543     467899999999953  343  9999999754

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.52  E-value=3.8e-15  Score=131.92  Aligned_cols=130  Identities=17%  Similarity=0.124  Sum_probs=89.6

Q ss_pred             CCCcccc-cccccccceeecccc--cccCCCCee-eeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeC
Q psy16044        271 AWPWQNL-ITSFLSAALLKLSRP--TSARDKGVR-AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN  346 (436)
Q Consensus       271 ~~p~~~~-~~~~~diali~l~~~--~~~~~~~v~-picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~  346 (436)
                      .||.|+. ....||||||||++|  +.++.. ++ +++|+...    ..++.|.++|||.+.....  ..|         
T Consensus        78 ~hp~y~~~~~~~~DiAll~L~~~~~~~~~~~-v~~~~~l~~~~----~~g~~~~v~GwG~~~~~~~--~~l---------  141 (218)
T 3cp7_A           78 TSAEWANRGDFEHDYAFAVLETKGGTTVQQQ-VGTASPIAFNQ----PRGQYYSAYGYPAAAPFNG--QEL---------  141 (218)
T ss_dssp             ECHHHHHHCCGGGCCEEEEECCBTTBCHHHH-HSCCBCBCCSC----CSSCEEEEEECCCSTTCCS--SSC---------
T ss_pred             ECcccccCCCCcCCEEEEEEeCCCCcChhHh-cCcccceeecC----CCCCEEEEEeCCCCCCCCC--cee---------
Confidence            5888874 467899999999999  777666 88 89998532    3678999999997642111  111         


Q ss_pred             cccccccc-CCC-ccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        347 ISVCRDKY-GDS-VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       347 ~~~C~~~~-~~~-~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                       ..|.... ... ......|+|+.        |.|||||||++. .+++++|+||+|||.+|...   .+|  -..|-+.
T Consensus       142 -~~C~~~~~~~~~~~~~~~~~Ca~--------~~GDSGGPlv~~-~~g~~~lvGIvS~G~gc~~~---~~~--~p~~~~~  206 (218)
T 3cp7_A          142 -HSCHGTATNDPMGSSTQGIPCNM--------TGGSSGGPWFLG-NGTGGAQNSTNSYGYTFLPN---VMF--GPYFGSG  206 (218)
T ss_dssp             -EEEEEECEECTTSSSCEEEECCC--------CTTCTTCEEEES-SSSSSCEEEECCEEETTEEE---EEE--ECCCCHH
T ss_pred             -eEeeeeEEcCCCCCceEEecCCC--------CCCCcCCeeEEc-cCCCeEEEEEEccccCCCCC---cEE--cCcCCHH
Confidence             4676532 211 11233789982        569999999996 36677899999999988641   233  3445677


Q ss_pred             HHHHHhh
Q psy16044        425 IRKQINI  431 (436)
Q Consensus       425 I~~~i~~  431 (436)
                      |+...+.
T Consensus       207 ~~~l~~~  213 (218)
T 3cp7_A          207 AQQNYNY  213 (218)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665544

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=99.52  E-value=7e-15  Score=133.18  Aligned_cols=94  Identities=27%  Similarity=0.478  Sum_probs=77.8

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~  252 (436)
                      +..|+++.+++++.+.|+..........+.||||+...++.++|.|||||||++. .+++|+|+||+|||.+|+  +.+.
T Consensus       150 ~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~~~~~~l~GI~S~g~~C~~~~~p~  228 (247)
T 1ddj_A          150 AGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCF-EKDKYILQGVTSWGLGCARPNKPG  228 (247)
T ss_dssp             TTBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEE-CSSSEEEEEEECGGGCCBBTTBCE
T ss_pred             CccceEEeeeecCHHHhcchhccCCCCcCCeEeecCCCCCCccccCcCcCcEEEE-ECCcEEEEEEEEECCCCCCCCCCE
Confidence            3579999999999999987533233456799999977666899999999999997 478999999999998854  3468


Q ss_pred             ccccccceecCCccccC
Q psy16044        253 RYSHRQPRLINGKESIR  269 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~~  269 (436)
                      +|++|..|..||.+.+.
T Consensus       229 vyt~V~~y~~WI~~~~~  245 (247)
T 1ddj_A          229 VYVRVSRFVTWIEGVMR  245 (247)
T ss_dssp             EEEEGGGSHHHHHHHHH
T ss_pred             EEEEhHHhHHHHHHHhh
Confidence            99999999999987653

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=99.51  E-value=1.1e-14  Score=134.25  Aligned_cols=114  Identities=28%  Similarity=0.401  Sum_probs=96.2

Q ss_pred             CCCcEEEEecCccCCCC-CccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCc
Q psy16044        156 PKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGR  234 (436)
Q Consensus       156 ~~~~~~~~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~  234 (436)
                      .+..+.++|||.+...+ .....|+.+.+.+++.++|...+.......+.++|++...+..++|.|||||||++.. +++
T Consensus       154 ~~~~~~~~g~G~~~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~-~~~  232 (276)
T 2vnt_A          154 FGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL-QGR  232 (276)
T ss_dssp             TTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTTSCCCCCTTCTTCEEEEEE-TTE
T ss_pred             ccceEEEEEeeccccCCCCcchhheeeeeeEecHHHhhhhhccCcccCccceeeccCCCCCCCCCCCCCCeEEEee-CCe
Confidence            35778999999886554 3456788999999999999988766556667899988888778999999999999984 789


Q ss_pred             EEEEEEEeEcCCCCC--CCcccccccceecCCccccCC
Q psy16044        235 WYLAGITSFGSGYCG--VGIRYSHRQPRLINGKESIRG  270 (436)
Q Consensus       235 ~~l~GI~S~g~~~C~--~~~~y~~v~~~~~~~~~~~~~  270 (436)
                      |+|+||+|||.+||.  .+.+||+|.+|..||++.+..
T Consensus       233 ~~lvGIvS~G~~C~~~~~P~vyt~V~~y~~WI~~~~~~  270 (276)
T 2vnt_A          233 MTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE  270 (276)
T ss_dssp             EEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHSC
T ss_pred             EEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhhh
Confidence            999999999998653  457999999999999987764

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=99.51  E-value=1.4e-14  Score=130.13  Aligned_cols=92  Identities=22%  Similarity=0.286  Sum_probs=77.8

Q ss_pred             ccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCcc
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGIR  253 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~~  253 (436)
                      ..|++..+++++.+.|+..+..  ...+.+||++...+..++|.|||||||++.. +++|+|+||+|||.+|+  +.+.+
T Consensus       134 ~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p~v  210 (234)
T 2asu_B          134 TVLNVALLNVISNQECNIKHRG--RVRESEMCTEGLLAPVGACEGDYGGPLACFT-HNSWVLEGIIIPNRVCARSRWPAV  210 (234)
T ss_dssp             TBCEEEEEEEECHHHHHHHTTT--CCCTTEEEECCCSSCCBCCTTCTTCEEEEEE-TTEEEEEEEECCCSSSSCTTCCEE
T ss_pred             ccceEEEeeEEcHHHcccccCC--ccCcceEeecCCCCCCeeccCCCCCceEEEE-CCeEEEEEEEEcCCCCCCCCCCeE
Confidence            5799999999999999988743  3467999998876668999999999999985 78999999999998744  24689


Q ss_pred             cccccceecCCccccCC
Q psy16044        254 YSHRQPRLINGKESIRG  270 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~~  270 (436)
                      |++|..|..||.+.+..
T Consensus       211 yt~V~~~~~WI~~~~~~  227 (234)
T 2asu_B          211 FTRVSVFVDWIHKVMRL  227 (234)
T ss_dssp             EEEGGGSHHHHHHHC--
T ss_pred             EEEHHHHHHHHHHHhhc
Confidence            99999999999887754

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=99.50  E-value=2e-14  Score=130.36  Aligned_cols=94  Identities=30%  Similarity=0.487  Sum_probs=79.0

Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCC
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVG  251 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~  251 (436)
                      ....|+++.+++++.++|+..+..  ...+.||||+...+..++|.|||||||++. .+++|+|+||+|||.+|+  +.+
T Consensus       145 ~~~~L~~~~~~i~~~~~C~~~~~~--~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~-~~g~~~l~GI~S~g~~C~~~~~p  221 (250)
T 1aut_C          145 RTFVLNFIKIPVVPHNECSEVMSN--MVSENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFLVGLVSWGEGCGLLHNY  221 (250)
T ss_dssp             CSSBCEEEEEEEECHHHHHHHCSS--CCCTTEEEECCTTCCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCC
T ss_pred             ccceeeEEEEEEecHHHhhHHhcc--CCCCCEEEeCCCCCCCCCCCCCCchheEEE-ECCeEEEEEEEEECCCCCCCCCC
Confidence            345799999999999999988754  345799999877666899999999999997 478999999999998743  246


Q ss_pred             cccccccceecCCccccCC
Q psy16044        252 IRYSHRQPRLINGKESIRG  270 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~~~  270 (436)
                      .+|++|.+|..||.+.+..
T Consensus       222 ~vyt~V~~y~~WI~~~~~~  240 (250)
T 1aut_C          222 GVYTKVSRYLDWIHGHIRD  240 (250)
T ss_dssp             EEEECGGGTHHHHHHHHC-
T ss_pred             EEEEEHHHHHHHHHHHhhc
Confidence            7999999999999877653

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.49  E-value=1.6e-14  Score=126.43  Aligned_cols=118  Identities=19%  Similarity=0.148  Sum_probs=79.6

Q ss_pred             ccccceeecccc----cccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCC
Q psy16044        281 FLSAALLKLSRP----TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD  356 (436)
Q Consensus       281 ~~diali~l~~~----~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  356 (436)
                      .+|||||||+.+    +.++.. ++|+||+.    ....++.+++.||+.-...   . ..+.+...+++.  +      
T Consensus        76 ~~DiAll~l~~~~~~~~~~~~~-v~pi~l~~----~~~~g~~v~v~G~p~g~~~---~-~~~~~~~g~v~~--~------  138 (200)
T 2w7s_A           76 KEDLAIVHVHETSTEGLNFNKN-VSYTKFAD----GAKVKDRISVIGYPKGAQT---K-YKMFESTGTINH--I------  138 (200)
T ss_dssp             SSSCEEEEECSBCTTSCBGGGS-CCCCCBCC----CCCTTCEEEEEECTTHHHH---T-SCEEEEEEEEEE--E------
T ss_pred             cceEEEEEECCCCCCccccccc-ccceeccc----cCCCCCEEEEEECCCCCCC---c-cceEEeEEEEEc--c------
Confidence            589999999996    777776 99999973    2457899999998642111   1 112334444432  1      


Q ss_pred             CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCC-CCCCCeE-EEeCcccHHHHHHHHh
Q psy16044        357 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCA-KSGYPDV-YTKLSFYLPWIRKQIN  430 (436)
Q Consensus       357 ~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~-~~~~p~v-~t~V~~~~~WI~~~i~  430 (436)
                          ...++|..     ...|.|||||||++.  ++  .|+||+||+..|+ ....+++ |+  +.|++||+++|+
T Consensus       139 ----~~~~~~~~-----~~~~~GdSGGPl~~~--~g--~lvGI~s~g~~~~~~~~~~~v~~~--~~~~~wI~~~~~  199 (200)
T 2w7s_A          139 ----SGTFMEFD-----AYAQPGNSGSPVLNS--KH--ELIGILYAGSGKDESEKNFGVYFT--PQLKEFIQNNIE  199 (200)
T ss_dssp             ----ETTEEEEC-----SCCCTTCTTCEEECT--TS--CEEEEEEEEC----CCCEEEEECC--HHHHHHHHHTSC
T ss_pred             ----CCCEEEEc-----ceeCCCCccCeEECc--CC--EEEEEEeccccCCCCccceeeecH--HHHHHHHHhhcc
Confidence                13456652     378999999999963  33  3999999998774 2222356 55  899999999875

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.48  E-value=2.8e-13  Score=127.08  Aligned_cols=162  Identities=17%  Similarity=0.146  Sum_probs=99.7

Q ss_pred             CCcceEEEeeeccCCC-----CCCeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeee
Q psy16044         37 AWPWQVSLQVLHPRLG-----LMPHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVE  110 (436)
Q Consensus        37 ~~Pw~v~i~~~~~~~~-----~~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~  110 (436)
                      -.|.+|.|........     .....|+|+||+++ ||||+|||+.+.       ..+.|.++..         ..+..+
T Consensus        18 ~~~sVV~I~~~~~~~~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~~-------~~i~V~~~~g---------~~~~a~   81 (318)
T 1te0_A           18 AAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDA-------DQIIVALQDG---------RVFEAL   81 (318)
T ss_dssp             HGGGEEEEEEEEECSSSSCCEEEEEEEEEEECSTTCEEEEEHHHHTTC-------SEEEEECTTS---------CEEEEE
T ss_pred             cCCcEEEEEeEeccCCcccccccCccEEEEEEeCCCEEEECHHHcCCC-------CEEEEEeCCC---------CEEEEE
Confidence            3578888866532211     01478999999998 999999999652       3456665431         122333


Q ss_pred             EEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhh
Q psy16044        111 RIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  190 (436)
Q Consensus       111 ~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~  190 (436)
                      -+..++     .+||||||++.+-     .+.+++|+..  ..+..+..++++||.....     .   .....+++...
T Consensus        82 v~~~d~-----~~DlAllk~~~~~-----~~~~~~l~~~--~~~~~G~~v~~~G~p~g~~-----~---~~~~g~vs~~~  141 (318)
T 1te0_A           82 LVGSDS-----LTDLAVLIIKATG-----GLPTIPINAR--RVPHIGDVVLAIGNPYNLG-----Q---TITQGIISATG  141 (318)
T ss_dssp             EEEEET-----TTTEEEEECCCSS-----CCCCCCCCTT--CCCCTTCEEEEECCCSSSS-----C---CEEEEEEEECC
T ss_pred             EEEeCC-----CceEEEEEEeCCC-----CCceEEeeCc--cCCCCCCEEEEEEcCCCCC-----C---cEEeeEEeccc
Confidence            222333     4899999998762     3677888753  3456789999999753221     1   11122222111


Q ss_pred             hhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       191 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      . ..+..  .....++|+.     ...|.|+|||||+..  +|  .|+||++++..
T Consensus       142 ~-~~~~~--~~~~~~i~~d-----~~~~~G~SGGPl~~~--~G--~vvGI~s~~~~  185 (318)
T 1te0_A          142 R-IGLNP--TGRQNFLQTD-----ASINHGNSGGALVNS--LG--ELMGINTLSFD  185 (318)
T ss_dssp             C-CCCCT--TCSCCSEEES-----SCCCTTTTTSEEECT--TC--CEEEEEECCSS
T ss_pred             c-cccCC--CCcCCEEEEC-----CCCCCCCCcCceECC--CC--eEEEEEeeeec
Confidence            1 01110  1123678874     578999999999963  44  39999999865

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.46  E-value=6.8e-14  Score=127.88  Aligned_cols=119  Identities=16%  Similarity=0.113  Sum_probs=84.5

Q ss_pred             ccccceeecccccc---cCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCC
Q psy16044        281 FLSAALLKLSRPTS---ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS  357 (436)
Q Consensus       281 ~~diali~l~~~~~---~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~  357 (436)
                      .+|||||||.+++.   ++.. ++|+||+...  ....++.++++|||...     ...++.....++..          
T Consensus        91 ~~DIALLkL~~~~~~~~~~~~-v~pi~L~~~~--~~~~g~~v~v~Gwg~~~-----~~~~~~~~~g~i~~----------  152 (268)
T 1wcz_A           91 EGDLAIVKFSPNEQNKHIGEV-VKPATMSNNA--ETQVNQNITVTGYPGDK-----PVATMWESKGKITY----------  152 (268)
T ss_dssp             SSCCEEEEECCCTTSCCHHHH-SCCCCBCCCS--SCCTTCEEEEEECCTTS-----STTCEEEEEEEEEE----------
T ss_pred             CCcEEEEEecCcccccccccc-cceeeccccc--ccCCCCEEEEEECCCCC-----CCceEEeecceEEe----------
Confidence            58999999999973   4445 8999998643  24578999999999643     12233333333321          


Q ss_pred             ccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHhh
Q psy16044        358 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINI  431 (436)
Q Consensus       358 ~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~~  431 (436)
                        +...++|..     ..+|.|||||||++.  .+  .|+||+|||..|+. . +.+|+ ++.|++||+++|+.
T Consensus       153 --~~~~~i~~~-----~~~c~GdSGGPLv~~--~g--~lvGIvS~G~~~~~-~-~~~~~-~~~~~~wI~~~i~~  212 (268)
T 1wcz_A          153 --LKGEAMQYD-----LSTTGGNSGSPVFNE--KN--EVIGIHWGGVPNEF-N-GAVFI-NENVRNFLKQNIED  212 (268)
T ss_dssp             --EETTEEEES-----BCCCTTCTTCEEECT--TS--CEEEEEEEEETTTE-E-EEEEC-CHHHHHHHHHHCTT
T ss_pred             --eCCCeEEEe-----cccCCCCccCeEEcc--CC--EEEEEEeCCccCCc-c-eeEEc-CHHHHHHHHHHHHh
Confidence              234567752     478999999999963  23  49999999988864 2 45554 78999999998854

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.45  E-value=3.7e-14  Score=124.53  Aligned_cols=118  Identities=15%  Similarity=0.163  Sum_probs=79.5

Q ss_pred             ccccceeeccc--------ccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccccc
Q psy16044        281 FLSAALLKLSR--------PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD  352 (436)
Q Consensus       281 ~~diali~l~~--------~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~  352 (436)
                      .+|||||||+.        ++.++.. ++|+||+.    ....++.+++.|||.....   ...+ ......+..     
T Consensus        75 ~~DiAll~l~~~~~~~~~~~~~~~~~-v~pi~l~~----~~~~g~~~~~~G~g~~~~~---~~~~-~~~~g~v~~-----  140 (204)
T 2vid_A           75 KEDVSVIQVEERAIERGPKGFNFNDN-VTPFKYAA----GAKAGERIKVIGYPHPYKN---KYVL-YESTGPVMS-----  140 (204)
T ss_dssp             SSCCEEEEECSEEEEEETTEEEHHHH-CCCCCBCS----CCCTTCEEEEEECCCCCC-----CCC-EEEEEEEEE-----
T ss_pred             CCeEEEEEEcCccccccccccccccc-ccccccCC----cCCCCCEEEEEeCCCCCCC---Ccce-EeeccEEee-----
Confidence            57999999995        4556655 89999974    2457899999999974321   1112 111112211     


Q ss_pred             ccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC---CCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        353 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG---CAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       353 ~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~---c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                             +...++|..     ...|.|||||||++.  ++  .|+||+||+..   |...+. .+|.. +.|++||+++|
T Consensus       141 -------~~~~~~~~~-----~~~~~GdSGGPl~~~--~g--~lvGI~s~g~~~~~~~~~~~-~~~~~-~~~~~wI~~~~  202 (204)
T 2vid_A          141 -------VEGSSIVYS-----AHTESGNSGSPVLNS--NN--ELVGIHFASDVKNDDNRNAY-GVYFT-PEIKKFIAENI  202 (204)
T ss_dssp             -------EETTEEEEC-----CCCCGGGTTCEEECT--TS--CEEEEEEEECC---CCCCEE-EECCC-HHHHHHHHHHS
T ss_pred             -------ccCCeEEEe-----cccCCCCccCcEECC--CC--eEEEEEecCccCCCcccccc-eeEeC-HHHHHHHHhhc
Confidence                   134578863     378999999999963  23  49999999973   444332 34444 88999999987


Q ss_pred             h
Q psy16044        430 N  430 (436)
Q Consensus       430 ~  430 (436)
                      +
T Consensus       203 ~  203 (204)
T 2vid_A          203 D  203 (204)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.45  E-value=1.6e-13  Score=125.83  Aligned_cols=120  Identities=17%  Similarity=0.137  Sum_probs=84.2

Q ss_pred             ccccceeecccccc---cCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCC
Q psy16044        281 FLSAALLKLSRPTS---ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS  357 (436)
Q Consensus       281 ~~diali~l~~~~~---~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~  357 (436)
                      .+|||||||++++.   +... ++|+||+...  ....++.|+++|||....     ..++......+..          
T Consensus        91 ~~DIALLkL~~~~~~~~~~~~-v~pi~L~~~~--~~~~g~~v~v~Gwg~~~~-----~~~~~~~~g~i~~----------  152 (274)
T 2o8l_A           91 EGDLAIVKFSPNEQNKHIGEV-VKPATMSNNA--ETQTNQNITVTGYPGDKP-----VATMWESKGKITY----------  152 (274)
T ss_dssp             SSCCEEEEECCCTTSCCTTTS-SCCCEECCCT--TCCTTCEEEEEECCTTSS-----TTCEEEEEEEEEE----------
T ss_pred             CCcEEEEEecCcccccccccc-cccccccccc--cccCCCEEEEEECCCCCC-----CceEEecCceEEe----------
Confidence            58999999999973   6666 9999998543  346789999999996431     1122222222211          


Q ss_pred             ccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHhhh
Q psy16044        358 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       358 ~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                        +...++|..     ...|.|||||||++.  .+  .|+||+|||..|+. . +.+| .++.|++||++.|+..
T Consensus       153 --~~~~~i~~~-----~~~c~GdSGGPLv~~--~g--~lvGIvS~G~~~~~-~-~~~~-~~~~~~~wI~~~i~~~  213 (274)
T 2o8l_A          153 --LKGEAMQYD-----LSTTGGNSGSPVFNE--KN--EVIGIHWGGVPNEF-N-GAVF-INENVRNFLKQNIEDI  213 (274)
T ss_dssp             --EETTEEEES-----CCCCTTCTTCEEECT--TS--CEEEEEEEEETTTE-E-EEEE-CCHHHHHHHHHHCTTC
T ss_pred             --cCCCeEEeC-----cccCCCCchhheecc--CC--eEEEEEeCcccCCC-C-ceEE-ecHHHHHHHHHHHhhh
Confidence              124466652     478999999999963  23  49999999988864 2 4554 4789999999988653

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=99.44  E-value=1e-13  Score=126.43  Aligned_cols=93  Identities=29%  Similarity=0.457  Sum_probs=77.0

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCC---CCCCCccCCCCCeeeeEec-CCcEEEEEEEeEcCCCCC-
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD---GFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGYCG-  249 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~---~~~~~C~gDsGgPl~~~~~-~~~~~l~GI~S~g~~~C~-  249 (436)
                      +..|+.+.+++++.+.|...+..  ...+.|||++...   ...++|.|||||||++... +++|+|+||+|||.+|+. 
T Consensus       157 ~~~l~~~~~~~~~~~~C~~~~~~--~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~C~~~  234 (259)
T 3rm2_H          157 PSVLQVVNLPIVERPVCKDSTRI--RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRD  234 (259)
T ss_dssp             CSBCEEEEEEBCCHHHHHHTCSS--CCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCT
T ss_pred             cccceEEEEEEeCHHHhhhhhcc--cCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEECCCCCCC
Confidence            56799999999999999998743  4567999997542   2358999999999999853 789999999999987543 


Q ss_pred             -CCcccccccceecCCccccC
Q psy16044        250 -VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       250 -~~~~y~~v~~~~~~~~~~~~  269 (436)
                       .+.+|++|..|..||.+.+.
T Consensus       235 ~~p~vyt~V~~~~~WI~~~i~  255 (259)
T 3rm2_H          235 GKYGFYTHVFRLKKWIQKVID  255 (259)
T ss_dssp             TCCEEEEETGGGHHHHHHHHH
T ss_pred             CCCeEEEEHHHhHHHHHHHHH
Confidence             45799999999999987653

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=99.44  E-value=5.2e-14  Score=135.57  Aligned_cols=92  Identities=26%  Similarity=0.534  Sum_probs=76.6

Q ss_pred             ccceeeeeeccchhhhhhhcCC-----CcCCcCCeEEeccCCCCCCCccCCCCCeeeeEe--cCCcEEEEEEEeEcCCCC
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGD-----SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL--KDGRWYLAGITSFGSGYC  248 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~--~~~~~~l~GI~S~g~~~C  248 (436)
                      ..|+++.+++++.+.|+..+..     .+.+.+.||||+...+ .++|.|||||||++..  .+++|+|+||+|||.+ |
T Consensus       282 ~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~~g-~d~C~GDSGGPLv~~~~~~~~~~~lvGIvS~G~~-C  359 (394)
T 2b9l_A          282 NILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIG-C  359 (394)
T ss_dssp             CBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCBSS-CSCCSSCTTCEEEEEETTEEEEEEEEEEESCTTC-C
T ss_pred             ccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCCCC-CcCCCCCcchhhEEEEcCCCCeEEEEEEEEECCC-C
Confidence            4699999999999999987642     2346779999986554 7999999999999963  3578999999999987 6


Q ss_pred             C---CCcccccccceecCCccccC
Q psy16044        249 G---VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       249 ~---~~~~y~~v~~~~~~~~~~~~  269 (436)
                      +   .+.+|++|..|+.||.+.+.
T Consensus       360 ~~~~~PgVYT~V~~y~~WI~~~i~  383 (394)
T 2b9l_A          360 GDENVPGVYANVAHFRNWIDQEMQ  383 (394)
T ss_dssp             CBSSSCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCCCeEEEEHHHhHHHHHHHHH
Confidence            4   46899999999999987764

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=99.43  E-value=1.6e-12  Score=116.60  Aligned_cols=144  Identities=21%  Similarity=0.256  Sum_probs=87.3

Q ss_pred             CeeeEEEEecCC--EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCC
Q psy16044         55 PHWCGAVLIHPS--WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSR  132 (436)
Q Consensus        55 ~~~C~GtLIs~~--~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~  132 (436)
                      ...++|+||+++  ||||+|||+.+.       ..+.|.+..         ...+..+-+..++.     +|||||||+.
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHvv~~a-------~~i~V~~~d---------g~~~~a~vv~~d~~-----~DlAlLkv~~  120 (245)
T 3sti_A           62 EGLGSGVIINASKGYVLTNNHVINQA-------QKISIQLND---------GREFDAKLIGSDDQ-----SDIALLQIQN  120 (245)
T ss_dssp             --CCEEEEEETTTTEEEECGGGC-----------CEEEECTT---------SCEEEEEEEEEETT-----TTEEEEEESS
T ss_pred             cceEEEEEEeCCCCEEEEcHHHhCCC-------CEEEEEECC---------CCEEEEEEEEecCC-----CCEEEEEecc
Confidence            356999999998  999999999652       445666542         12344555556665     7999999986


Q ss_pred             CCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCC
Q psy16044        133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD  212 (436)
Q Consensus       133 ~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~  212 (436)
                      +..     +.++.|...  ..+..++.++++||......        ....-+++...+.. +.  ......++|+.   
T Consensus       121 ~~~-----~~~~~l~~s--~~~~~G~~v~aiG~P~g~~~--------~vt~G~vs~~~~~~-~~--~~~~~~~i~td---  179 (245)
T 3sti_A          121 PSK-----LTQIAIADS--DKLRVGDFAVAVGNPFGLGQ--------TATSGIVSALGRSG-LN--LEGLENFIQTD---  179 (245)
T ss_dssp             CCS-----CCCCCBCCG--GGCCTTBEEEEEECGGGSCC--------EEEEEEEEECSSCS-SC--CTTCSSCEEES---
T ss_pred             CCC-----CceeeecCc--CCCCCCCEEEEEECCCCCCC--------cEEeeEEeeecccc-cC--CCCccCEEEEc---
Confidence            533     567777653  33567899999998543211        11112222221210 11  11123456663   


Q ss_pred             CCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        213 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       213 ~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                        ...|.|+|||||+..  +|+  |+||+|+...
T Consensus       180 --a~i~~G~SGGPLvn~--~G~--vVGI~s~~~~  207 (245)
T 3sti_A          180 --ASINRGNSGGALLNL--NGE--LIGINTAILA  207 (245)
T ss_dssp             --SCCCTTTTTSEEECT--TSC--EEEEEECCC-
T ss_pred             --CCcCCCcchhHeecC--CCe--EEEEEEeEEC
Confidence              568999999999942  343  9999999754

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.39  E-value=1.3e-13  Score=118.52  Aligned_cols=121  Identities=19%  Similarity=0.169  Sum_probs=83.5

Q ss_pred             ccccceeecccccccCCCCeeee----ccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAV----CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD  356 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~pi----cl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  356 (436)
                      .+|||||||+.++.+... |+++    +++.... .+..++.+.+.||...    .....++.+.+.+ +...+.. +..
T Consensus        53 ~~DiAlikl~~~~~~~~~-v~~i~~~~~~~~~~~-~~~~G~~v~~~G~~~~----~t~G~v~~~~~~v-~~~~~~~-~~~  124 (181)
T 2sga_A           53 NNDYGIIRHSNPAAADGR-VYLYNGSYQDITTAG-NAFVGQAVQRSGSTTG----LRSGSVTGLNATV-NYGSSGI-VYG  124 (181)
T ss_dssp             BSCEEEEEESCGGGCCCE-EECSSSCEEECCEEC-CCCTTCEEEEEETTTE----EEEEEEEEEEEEE-ECGGGCE-EEE
T ss_pred             CCCEEEEEccCCCcccce-EEecCCcceeecccc-cCCCCCEEEEeecCCC----ccEEEEEEeEEEE-ECCCCCE-Eee
Confidence            579999999999888766 8988    7764322 4578999999998742    1234466666664 3333321 111


Q ss_pred             CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHH
Q psy16044        357 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR  426 (436)
Q Consensus       357 ~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~  426 (436)
                        .+ ..++|+         |.|||||||++.   +  .++||+||+..|+....|++|++|..|++|+.
T Consensus       125 --~i-~~~~c~---------~~GDSGGPlv~~---~--~~vGI~s~g~~~~~~~~~~v~~~v~~~~~~l~  177 (181)
T 2sga_A          125 --MI-QTNVCA---------QPGDSGGSLFAG---S--TALGLTSGGSGNCRTGGTTFYQPVTEALSAYG  177 (181)
T ss_dssp             --EE-EESCCC---------CTTCTTCEEEET---T--EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHT
T ss_pred             --eE-eccccc---------CCCCCCCEEEEC---C--EEEEEEEeeCCCCcCCCceEEEEHHHHHHhcC
Confidence              01 113443         579999999974   2  59999999976444456999999999999985

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.36  E-value=1e-12  Score=118.49  Aligned_cols=118  Identities=17%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             cccccceeecccccc---cCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCC
Q psy16044        280 SFLSAALLKLSRPTS---ARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD  356 (436)
Q Consensus       280 ~~~diali~l~~~~~---~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  356 (436)
                      ..+|||||+|+.|+.   ++.. ++|+||+...  ....++.++++|||.....    ..++...+.+++...       
T Consensus       117 ~~~DiAll~l~~~~~~~~~~~~-v~~i~L~~~~--~~~~g~~~~v~Gwg~~~~~----~~l~~~~~~~~~~~~-------  182 (242)
T 1agj_A          117 AGVDLALIRLKPDQNGVSLGDK-ISPAKIGTSN--DLKDGDKLELIGYPFDHKV----NQMHRSEIELTTLSR-------  182 (242)
T ss_dssp             TTSCCEEEEECCCTTSCCHHHH-SCCCEECCST--TCCTTCEEEEEECCTTTST----TCCEEEEEEECCGGG-------
T ss_pred             CCCcEEEEEEcCCCcccccccc-ccceecCccc--cCCCCCEEEEEeCCCCCCC----ccceeeeeeEecCCc-------
Confidence            579999999999964   4444 8999998543  3467899999999975432    246666666554211       


Q ss_pred             CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCC-CCCCCeEEEeCcccHHHHHH
Q psy16044        357 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCA-KSGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       357 ~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~-~~~~p~v~t~V~~~~~WI~~  427 (436)
                             .++..     ..+|.|||||||++.  ++  .|+||+||+.+|. ......+.+.|...+.|+.+
T Consensus       183 -------~~~~~-----~~~c~GdSGGPl~~~--~g--~lvGI~s~g~~c~~~~~~~~~~~~i~~~~~~~l~  238 (242)
T 1agj_A          183 -------GLRYY-----GFTVPGNSGSGIFNS--NG--ELVGIHSSKVSHLDREHQINYGVGIGNYVKRIIN  238 (242)
T ss_dssp             -------SEEEE-----CCCCGGGTTCEEECT--TS--EEEEEEEEEEECSSTTCEEEEEEECCHHHHHHHH
T ss_pred             -------eEEEe-----CCcCCCCCchHhccc--CC--EEEEEEeccccccCcCCCceeeEEehHHHHHHHH
Confidence                   12211     268999999999963  33  5999999999987 33346778999866665543

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=99.31  E-value=8.7e-13  Score=136.85  Aligned_cols=93  Identities=27%  Similarity=0.456  Sum_probs=78.8

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~  252 (436)
                      +..|+++.+.+++.+.|+........+.+.||||+...++.++|+|||||||++.. +++|+|+||+|||.+|+  +.+.
T Consensus       694 s~~L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~-~~~~~LvGIvS~G~gC~~~~~Pg  772 (791)
T 4dur_A          694 AGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFE-KDKYILQGVTSWGLGCARPNKPG  772 (791)
T ss_dssp             TTBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEE-TTEEEEEEECCTTTCCBBTTBCE
T ss_pred             CCeeEEEEEEEeCHHHhhcccccCCCCCCCeEEeccCCCCCCCCCCCcccceEEEe-CCeEEEEEEEEeCCCCCCCCCCe
Confidence            45799999999999999876433345677999999887778999999999999974 78999999999998854  2468


Q ss_pred             ccccccceecCCcccc
Q psy16044        253 RYSHRQPRLINGKESI  268 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~  268 (436)
                      +|++|..|+.||.+++
T Consensus       773 VYTrVs~y~dWI~~~i  788 (791)
T 4dur_A          773 VYVRVSRFVTWIEGVM  788 (791)
T ss_dssp             EEEEGGGTHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHH
Confidence            9999999999998765

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=99.26  E-value=1.7e-11  Score=116.01  Aligned_cols=72  Identities=24%  Similarity=0.484  Sum_probs=62.7

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD  356 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  356 (436)
                      .||||||||++|+.++.. |+|||||..+.  ...+..++++|||.+.. ...+..|+++.+++++.++|++.+..
T Consensus       185 ~nDIALlkL~~~v~~~~~-v~PicLp~~~~--~~~g~~~~v~GWG~~~~-~~~s~~L~~~~v~iv~~~~C~~~~~~  256 (347)
T 4f4o_C          185 TVDIGLIKLKQKVPVNER-VMPICLPSKDY--VNVGLVGYVSGWGRNAN-LNFTEHLKYVMLPVADQEKCVQYYEG  256 (347)
T ss_dssp             TCCCEEEEESSCCCCSSS-CCCCBCCSSCC--CCTTCEEEEEECSBCTT-SSBCSSCEEEEEEEECHHHHHHHHSS
T ss_pred             CCCEEEEEECCCccCCCc-eeeeecCcccc--CCCCcEEEEeccccCCC-CCCCccceEEEEEEeCHHHHHHHhcc
Confidence            489999999999999998 99999997654  45789999999998754 34578899999999999999998765

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.25  E-value=2.5e-12  Score=129.79  Aligned_cols=106  Identities=32%  Similarity=0.569  Sum_probs=64.8

Q ss_pred             EEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEE
Q psy16044        160 CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAG  239 (436)
Q Consensus       160 ~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~G  239 (436)
                      ++++|||.+... ..+..|+.+.+++++.  |+..+...+ ..+.||||+...+..++|+|||||||++...+++|+|+|
T Consensus       449 ~~v~GWG~t~~~-~~~~~L~~~~v~i~~~--C~~~~~~~~-~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~~~lvG  524 (565)
T 2xrc_A          449 CIVSGWGREKDN-ERVFSLQWGEVKLISN--CSKFYGNRF-YEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWG  524 (565)
T ss_dssp             EEEEC--------------CEEEEEECSC--THHHHTTSC-CTTTEEEEEEC----------CCCEEEEECTTCCEEEEE
T ss_pred             EEEEeCccCCCC-CccceeeEEeeeehHH--hHHhhccCc-CCCceEEeCCCCCCCccCCCccccceEEEeCCCcEEEEE
Confidence            689999988753 3567799999999874  998876532 234599999877778999999999999986678999999


Q ss_pred             EEeEcCCCCC---CCcccccccceecCCccccCC
Q psy16044        240 ITSFGSGYCG---VGIRYSHRQPRLINGKESIRG  270 (436)
Q Consensus       240 I~S~g~~~C~---~~~~y~~v~~~~~~~~~~~~~  270 (436)
                      |+|||.+ |+   .+.+|++|..|+.||.+.+..
T Consensus       525 IvS~G~~-C~~~~~PgVYTrVs~y~~WI~~~i~~  557 (565)
T 2xrc_A          525 VVSWGEN-CGKPEFPGVYTKVANYFDWISYHVGR  557 (565)
T ss_dssp             EECC-------CCCCEEEEEGGGGHHHHHHHC--
T ss_pred             EEeeCCC-CCCCCCCEEEEEHHHHHHHHHHHhcc
Confidence            9999987 54   467999999999999887753

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.22  E-value=9.2e-11  Score=110.73  Aligned_cols=145  Identities=21%  Similarity=0.247  Sum_probs=91.1

Q ss_pred             CeeeEEEEecCC--EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCC
Q psy16044         55 PHWCGAVLIHPS--WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSR  132 (436)
Q Consensus        55 ~~~C~GtLIs~~--~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~  132 (436)
                      ...++|.||+++  ||||+|||+.+.       ..+.|.+..         ...+..+-+..||.     +||||||++.
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHVv~~~-------~~i~V~~~d---------g~~~~a~vv~~d~~-----~DlAlLkv~~  120 (345)
T 3stj_A           62 EGLGSGVIINASKGYVLTNNHVINQA-------QKISIQLND---------GREFDAKLIGSDDQ-----SDIALLQIQN  120 (345)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTTE-------EEEEEECTT---------SCEEEEEEEEEETT-----TTEEEEEESS
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCCC-------CEEEEEeCC---------CcEEEEEEEEEcCC-----CCEEEEEEcc
Confidence            357999999997  999999998652       445565532         13455666677776     6999999976


Q ss_pred             CCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCC
Q psy16044        133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD  212 (436)
Q Consensus       133 ~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~  212 (436)
                      +..     +.++.|...  ..+..+..++++||......        ....-+++...+.. ..  ......++++.   
T Consensus       121 ~~~-----~~~~~l~~s--~~~~~G~~V~aiG~p~g~~~--------~vt~G~Vs~~~~~~-~~--~~~~~~~iq~d---  179 (345)
T 3stj_A          121 PSK-----LTQIAIADS--DKLRVGDFAVAVGNPFGLGQ--------TATSGIVSALGRSG-LN--LEGLENFIQTD---  179 (345)
T ss_dssp             CCS-----CCCCCBCCG--GGCCTTBEEEEEECGGGCSC--------EEEEEEEEEEEECC-SS--SSSSCCEEEEC---
T ss_pred             cCC-----CceEeecCc--ccCCCCCEEEEEECCCCCCC--------cEEeeEEeeecccc-cC--CCCccCEEEEe---
Confidence            533     456666653  33567899999999643211        11111222111110 00  01112455553   


Q ss_pred             CCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCC
Q psy16044        213 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY  247 (436)
Q Consensus       213 ~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~  247 (436)
                        ...|.|+|||||+..  +|+  ++||.++....
T Consensus       180 --a~i~~GnSGGPLvn~--~G~--vVGI~s~~~~~  208 (345)
T 3stj_A          180 --ASINRGNSGGALLNL--NGE--LIGINTAILAP  208 (345)
T ss_dssp             --SCCCTTCTTCEEECT--TSC--EEEEEEEEECT
T ss_pred             --cccCCCcCccceeCC--CCE--EEEEEeccccC
Confidence              568999999999953  444  99999986543

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.22  E-value=5.3e-11  Score=102.34  Aligned_cols=156  Identities=19%  Similarity=0.172  Sum_probs=89.4

Q ss_pred             CeeeE-EEEecC---CEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEe
Q psy16044         55 PHWCG-AVLIHP---SWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKL  130 (436)
Q Consensus        55 ~~~C~-GtLIs~---~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L  130 (436)
                      ...|+ |.++++   .+||||+||+...       .  .+.++...       ...-.+.. ..+|     .+|+|||||
T Consensus        11 ~~~CT~Gfiv~~~g~~~ilT~~Hv~~~~-------~--~v~~~~~~-------~~~g~~~~-~~~~-----~~DiAlikl   68 (187)
T 1hpg_A           11 GSRCSAAFNVTKGGARYFVTAGHCTNIS-------A--NWSASSGG-------SVVGVREG-TSFP-----TNDYGIVRY   68 (187)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTC-------S--EEESSTTC-------CEEEEEEE-EECS-----BSCEEEEEE
T ss_pred             CCcCcceEEEEECCeeEEEECcccCCCC-------C--eEEeCCCc-------eeEEEEeC-ccCC-----CCCEEEEEe
Confidence            46799 888887   4999999998652       1  22222100       00000110 1113     379999999


Q ss_pred             CCCCCCCCCceee-----eeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCe
Q psy16044        131 SRPTSARDKGVRA-----VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH  205 (436)
Q Consensus       131 ~~~~~~~~~~v~p-----i~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~  205 (436)
                      +.++. ....+..     +.+..  ...+..++.+..+||....    ....+......+.        +...  ....+
T Consensus        69 ~~~~~-~~~~v~~~~g~~~~i~~--~~~~~~G~~v~~~G~~~g~----t~G~v~~~~~~v~--------~~~~--~~~~~  131 (187)
T 1hpg_A           69 TDGSS-PAGTVDLYNGSTQDISS--AANAVVGQAIKKSGSTTKV----TSGTVTAVNVTVN--------YGDG--PVYNM  131 (187)
T ss_dssp             CSSCC-CCSEEECSSSCEEECCE--ECCCCTTCEEEEEETTTEE----EEEEEEEEEEEEE--------ETTE--EEEEE
T ss_pred             CCCCC-cCceEEecCCceeeecc--ccCCCCCCEEEEEEcCCCE----eEEEEEEeEEEEE--------eCCC--eEeee
Confidence            98765 3332221     22322  2345678899999987421    1112333332221        1100  12368


Q ss_pred             EEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC--Ccccccccc
Q psy16044        206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV--GIRYSHRQP  259 (436)
Q Consensus       206 ~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~--~~~y~~v~~  259 (436)
                      +|+.     ...|.|||||||++.   +  .++||+|++...|..  ...|+++..
T Consensus       132 i~t~-----~~~~~GdSGgpl~~~---~--~~vGi~s~~~~~~~~~~~~~~~~i~~  177 (187)
T 1hpg_A          132 VRTT-----ACSAGGDSGGAHFAG---S--VALGIHSGSSGCSGTAGSAIHQPVTE  177 (187)
T ss_dssp             EEEC-----CCCCTTCTTCEEEET---T--EEEEEEEEESCCBTTBCCCEEEEHHH
T ss_pred             EEec-----cccCCCCCCCeEEEC---C--EEEEEEEeeCCCCCCCCceEEEEHHH
Confidence            8874     567899999999964   2  699999999876753  345665543

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.10  E-value=2.2e-10  Score=100.65  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=74.9

Q ss_pred             ccccceeeccc--------ccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccccc
Q psy16044        281 FLSAALLKLSR--------PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRD  352 (436)
Q Consensus       281 ~~diali~l~~--------~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~  352 (436)
                      .+|||||+|+.        |+.++.. ++|+||+.    ....++.+++.||+.....   ...+ .+...+++..    
T Consensus        76 ~~DiAll~l~~~~~~~~~~~~~~~~~-v~~i~l~~----~~~~g~~v~v~G~p~~~~~---~~~l-~~~~g~v~~~----  142 (210)
T 2as9_A           76 DEDISVMNIEEQAVERGPKGFNFNEN-VQAFNFAK----DAKVDDKIKVIGYPLPAQN---SFKQ-FESTGTIKRI----  142 (210)
T ss_dssp             SSSCEEEEECSEEEEEETTEEEGGGS-CCCCCBCS----CCCTTCEEEEEECSSTTTT---TSCC-EEEEEEEEEE----
T ss_pred             CCcEEEEEecCccccccccccccccc-cceeecCC----CCCCCCEEEEEeCCCCCCC---Ccce-EEeeeEEccc----
Confidence            58999999998        5777776 99999973    3467899999999863321   1122 4444454432    


Q ss_pred             ccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCc-ccHHHHH
Q psy16044        353 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLS-FYLPWIR  426 (436)
Q Consensus       353 ~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~-~~~~WI~  426 (436)
                              ...++|..     ...|.|||||||++.  +|+  |+||+||+........ ..|+.+. ..+.|++
T Consensus       143 --------~~~~i~~~-----~~~~~GdSGGPlv~~--~g~--lvGI~s~g~~~~~~~~-~~~~~~~~~i~~f~~  199 (210)
T 2as9_A          143 --------KDNILNFD-----AYIEPGNSGSPVLNS--NNE--VIGVVYGGIGKIGSEY-NGAVYFTPQIKDFIQ  199 (210)
T ss_dssp             --------ETTEEEEE-----CCCCTTCTTCEEECT--TSC--EEEEECCSCCCTTCSS-EEEEECCHHHHHHHH
T ss_pred             --------cCCeEEEc-----CccCCCCccCcEECC--CCe--EEEEEecccccCCccc-cccEEEcHHHHHHHH
Confidence                    13567763     368999999999973  343  9999999975322122 2355553 2444443

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=99.09  E-value=6.5e-11  Score=101.59  Aligned_cols=149  Identities=22%  Similarity=0.264  Sum_probs=79.6

Q ss_pred             CeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCC
Q psy16044         55 PHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPT  134 (436)
Q Consensus        55 ~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~  134 (436)
                      ...|+.-.+-.++||||+||+...       .  .|.+.  +       ...       .+..|  ..+|||||||+.+.
T Consensus        14 ~~~CT~Gf~~~~~ilTa~Hc~~~~-------~--~v~~~--d-------g~v-------~~~~~--~~~DiAlikl~~~~   66 (189)
T 2ea3_A           14 RSRCSIGFAVNGGFITAGHCGRTG-------A--TTANP--T-------GTF-------AGSSF--PGNDYAFVRTGAGV   66 (189)
T ss_dssp             EEEEECCEEETTEEEECGGGCCTT-------C--EEETT--T-------EEE-------EEEEC--SBSCEEEEEECTTC
T ss_pred             CCCCccCEEccCeEEEchhcCCCC-------C--EEEeC--C-------cEE-------EeeCC--CCCCEEEEEECCCC
Confidence            357995555555999999998542       1  12221  0       111       11111  23799999999886


Q ss_pred             CCCCCcee-----eeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCC--cCCcCCeEE
Q psy16044        135 SARDKGVR-----AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS--VELHGGHLC  207 (436)
Q Consensus       135 ~~~~~~v~-----pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~C  207 (436)
                      . ....++     ++.|+..  ..+..++.+.  .||.+.       .+....+..++...+   +...  ......++|
T Consensus        67 ~-~~~~v~~~~g~~v~l~~s--~~~~vG~~v~--~~G~~t-------G~t~G~Vs~~~~~v~---~~~~~~~~~~~~~~~  131 (189)
T 2ea3_A           67 N-LLAQVNNYSGGRVQVAGH--TAAPVGSAVC--RSGSTT-------GWHCGTITALNSSVT---YPEGTVRGLIRTTVC  131 (189)
T ss_dssp             E-EEEEEECSSSCEEECCBC--CCCCTTCEEE--EEETTT-------EEEEEEEEEEEEEEE---ETTEEEEEEEEESCC
T ss_pred             c-cccceEecCCceeecCCC--cCCCCCCEEE--EEEeCC-------ccEEEEEEecceEEE---eCCccCcceEEeeee
Confidence            5 333444     5666652  2344566544  444332       122222332222211   1000  001113344


Q ss_pred             eccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCC--cccccccc
Q psy16044        208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG--IRYSHRQP  259 (436)
Q Consensus       208 a~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~--~~y~~v~~  259 (436)
                      +.         +|||||||++.   +  .++||+||+.++|+..  ..|+++..
T Consensus       132 ~~---------~GDSGgpl~~~---~--~~vGi~s~~~~~c~~~~~~~~~pi~~  171 (189)
T 2ea3_A          132 AE---------PGDSGGSLLAG---N--QAQGVTSGGSGNCRTGGTTFFQPVNP  171 (189)
T ss_dssp             CC---------TTCTTCEEEET---T--EEEEEEEEEEEETTTEEEEEEEEHHH
T ss_pred             cc---------CCCccCeEEEC---C--EEEEEEeecCCCCCCCCcEEEEEHHH
Confidence            42         79999999963   3  5999999998767643  45555544

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.00  E-value=3.6e-09  Score=103.26  Aligned_cols=145  Identities=20%  Similarity=0.223  Sum_probs=91.1

Q ss_pred             CeeeEEEEecCC--EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCC
Q psy16044         55 PHWCGAVLIHPS--WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSR  132 (436)
Q Consensus        55 ~~~C~GtLIs~~--~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~  132 (436)
                      ...++|.+|+++  ||||+|||+.+.       ..+.|.+..         ...+..+-+..||.     +||||||++.
T Consensus        62 ~~~GSGfii~~~~G~IlTn~Hvv~~a-------~~i~V~~~d---------g~~~~a~vv~~d~~-----~DlAllkv~~  120 (436)
T 4a8c_A           62 EGLGSGVIINASKGYVLTNNHVINQA-------QKISIQLND---------GREFDAKLIGSDDQ-----SDIALLQIQN  120 (436)
T ss_pred             ceEEEEEEEECCCCEEEECHHHhCCC-------CEEEEEeCC---------CCEEEEEEEEEcCC-----CCEEEEEecC
Confidence            467999999997  999999999652       455666532         13455666677776     6999999976


Q ss_pred             CCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCC
Q psy16044        133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD  212 (436)
Q Consensus       133 ~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~  212 (436)
                      +..     +.++.|.+.  ..+..+..+.++||.....     .....   -+++...+.. +..  .....++.+.   
T Consensus       121 ~~~-----l~~~~l~~s--~~~~~G~~v~aiG~P~g~~-----~~vt~---G~vs~~~r~~-~~~--~~~~~~iq~d---  179 (436)
T 4a8c_A          121 PSK-----LTQIAIADS--DKLRVGDFAVAVGNPFGLG-----QTATS---GIVSALGRSG-LNL--EGLENFIQTD---  179 (436)
T ss_pred             CCC-----CceEeccCc--ccCCCCCEEEEEEcCCCCC-----ccEEE---EEEeeecccc-cCC--CCccCEEEEc---
Confidence            532     567777753  3456789999999854321     11111   1222111110 000  0011344442   


Q ss_pred             CCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCC
Q psy16044        213 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY  247 (436)
Q Consensus       213 ~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~  247 (436)
                        ...|.|+|||||+..  +|  .++||.++....
T Consensus       180 --a~i~~GnSGGPl~n~--~G--~vvGI~~~~~~~  208 (436)
T 4a8c_A          180 --ASINRGNAGGALLNL--NG--ELIGINTAILAP  208 (436)
T ss_pred             --CccCCCCCcCcccCC--CC--EEEEEEeeeccC
Confidence              567899999999953  34  499999987553

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=98.97  E-value=4.9e-10  Score=90.54  Aligned_cols=56  Identities=36%  Similarity=0.490  Sum_probs=49.4

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCC
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK  328 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~  328 (436)
                      .||.|+..+..||||||||++|+.++.. |+|||||.... ....++.|+++|||.+.
T Consensus        75 ~hp~y~~~~~~~DIALl~L~~~~~~~~~-v~picLp~~~~-~~~~g~~~~v~GWG~t~  130 (131)
T 1yph_C           75 KNSKYNSLTINNDITLLKLSTAASFSQT-VSAVCLPSASD-DFAAGTTCVTTGWGLTR  130 (131)
T ss_dssp             ECTTCCTTTCCSCCEEEEESSCCCCBTT-BCCCBCCCTTC-CCCTTCEEEEEESCCSC
T ss_pred             eCCCCCCCCCCCCEEEEEECCcccCCCc-CcceECCCccc-CCCCCCEEEEEcCCccC
Confidence            4899998889999999999999999988 99999997665 35678999999999763

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.86  E-value=9.4e-09  Score=100.54  Aligned_cols=147  Identities=24%  Similarity=0.258  Sum_probs=86.4

Q ss_pred             CeeeEEEEecC--CEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCC
Q psy16044         55 PHWCGAVLIHP--SWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSR  132 (436)
Q Consensus        55 ~~~C~GtLIs~--~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~  132 (436)
                      ...++|.+|++  .||||+|||+.+.       ..+.|.+..         ...+..+-+..||.     .||||||++.
T Consensus        76 ~~~GSGfiI~~~~G~IlTn~HVv~~a-------~~i~V~~~d---------g~~~~a~vv~~d~~-----~DlAlLkv~~  134 (451)
T 3pv2_A           76 ESIGSGVIIDPNNGVIITNDHVIRNA-------SLITVTLQD---------GRRLKARLIGGDSE-----TDLAVLKIDA  134 (451)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTTE-------EEEEEECTT---------SCEEECEEEEEETT-----TTEEEEECCC
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCCC-------CEEEEEEcC---------CCEEEEEEEecCcC-----CcEEEEEEcC
Confidence            45799999997  4999999999652       445666532         13455666677776     6999999964


Q ss_pred             CCCCCCCceeeeeecCCCCCCCCCCCcEEEEe--cCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEecc
Q psy16044        133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATG--WGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ  210 (436)
Q Consensus       133 ~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~G--wG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~  210 (436)
                            ..+.++.|.+.  ..+..++.++++|  ||.....  .........+.-+.....    ..  .....++++. 
T Consensus       135 ------~~l~~~~l~~s--~~~~~G~~V~aiG~P~G~~~~~--~~~~vt~Givs~~~r~~~----~~--~~~~~~iqtd-  197 (451)
T 3pv2_A          135 ------KNLKSLVIGDS--DKLEVGDFVVAIGNPFGLNSFG--NSQSATFGIVSALKRSDL----NI--EGVENFIQTD-  197 (451)
T ss_dssp             ------SSCCCCCBCCG--GGCCTTCEEEEEECCCCC-------CCEEEEEEEEEEC----------------CCEEES-
T ss_pred             ------cCCceeEecCc--ccCCCCCEEEEEECCCCccccc--cCCceeEEEEeecccccc----CC--CCcceEEEEe-
Confidence                  12456666542  3456789999999  5543211  011122222222211100    00  0112445553 


Q ss_pred             CCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCC
Q psy16044        211 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY  247 (436)
Q Consensus       211 ~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~  247 (436)
                          ...+.|+|||||+..  +|+  |+||.++....
T Consensus       198 ----a~i~~GnSGGPl~n~--~G~--VIGI~t~~~~~  226 (451)
T 3pv2_A          198 ----AAINPGNSGGALVNA--KGE--LIGINTAILSP  226 (451)
T ss_dssp             ----SCCCGGGTTSEEEET--TCC--EEEEEECCC--
T ss_pred             ----cccCCCCCcCcccCC--CCe--EEEEEeEeecC
Confidence                567899999999953  444  99999987543

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=98.85  E-value=2.8e-09  Score=91.08  Aligned_cols=34  Identities=38%  Similarity=0.588  Sum_probs=25.2

Q ss_pred             cCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCC--cccccc
Q psy16044        219 IGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG--IRYSHR  257 (436)
Q Consensus       219 ~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~--~~y~~v  257 (436)
                      +|||||||++.   +  .++||+||+.+.|...  ..|+++
T Consensus       137 ~GDSGgpl~~~---~--~~vGi~s~g~~~c~~~~~~~~~pi  172 (186)
T 2pfe_A          137 GGDSGGPWLTG---S--QAQGVTSGGTGDCRSGGITFFQPI  172 (186)
T ss_dssp             TTCTTCEEEET---T--EEEEEEEEEEEETTTEEEEEEEEH
T ss_pred             CCCccCeEEEC---C--EEEEEEeecCCCCCCCCcEEEEEH
Confidence            69999999963   2  5999999998767543  344444

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=98.78  E-value=6.5e-09  Score=93.59  Aligned_cols=93  Identities=24%  Similarity=0.268  Sum_probs=62.0

Q ss_pred             cccccceeeccccc---ccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCC
Q psy16044        280 SFLSAALLKLSRPT---SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD  356 (436)
Q Consensus       280 ~~~diali~l~~~~---~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  356 (436)
                      ..+|||||+|+.++   .++.. ++|+||+....  ...++.+++.||+.....   + .+....+.+.+      ..  
T Consensus       111 ~~~DiALLkl~~~~~~~~~~~~-v~~i~L~~~~~--~~~g~~v~v~G~p~g~~~---~-~~~~~~~~~~~------~~--  175 (246)
T 1qtf_A          111 QGLDLAIIKLKPNEKGESAGDL-IQPANIPDHID--IAKGDKYSLLGYPYNYSA---Y-SLYQSQIEMFN------DS--  175 (246)
T ss_dssp             TTSCCEEEEECCCTTSCCHHHH-SCCCCCCSSCC--CCTTCEEEEEECCTTTST---T-CCEEEEEEESS------SS--
T ss_pred             CCCCEEEEEEeCCccccccccc-eeeeecCCccc--cCCCCEEEEEECCCCCCC---c-eeEeeeeeecC------cE--
Confidence            47899999999997   44444 89999986532  467899999999753211   1 12222333332      00  


Q ss_pred             CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC
Q psy16044        357 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  405 (436)
Q Consensus       357 ~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~  405 (436)
                             .      . ....|.|||||||++.  ++  .|+||+||+..
T Consensus       176 -------~------~-~~~~~~GdSGGPlv~~--~g--~lvGI~s~g~~  206 (246)
T 1qtf_A          176 -------Q------Y-FGYTEVGNSGSGIFNL--KG--ELIGIHSGKGG  206 (246)
T ss_dssp             -------B------E-ESCCCGGGTTCEEECT--TC--CEEEEEEEEET
T ss_pred             -------E------E-eCCCCCCCchhheECC--CC--EEEEEEecccc
Confidence                   0      0 1257999999999963  33  39999999864

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=98.74  E-value=1.8e-08  Score=86.33  Aligned_cols=27  Identities=44%  Similarity=0.674  Sum_probs=22.0

Q ss_pred             cCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC
Q psy16044        219 IGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV  250 (436)
Q Consensus       219 ~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~  250 (436)
                      +|||||||++.   +  .++||+|++.+.|+.
T Consensus       140 ~GDSGgpl~~~---~--~~vGi~s~~~~~~~~  166 (188)
T 2oua_A          140 PGDSGGSFISG---T--QAQGVTSGGSGNCRT  166 (188)
T ss_dssp             TTCTTCEEEET---T--EEEEEEEEEEEETTT
T ss_pred             CCCccceEEEC---C--EEEEEEeccCCCCCC
Confidence            79999999953   3  599999999766754

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=98.70  E-value=2.3e-08  Score=85.72  Aligned_cols=117  Identities=16%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             ccccceeecccccccCCCCeee-----eccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRA-----VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYG  355 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~p-----icl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  355 (436)
                      .+|+||||++.+...... +..     +.+..  ...+..++.+...||..-    .....+..+...+.        +.
T Consensus        60 ~~DiAlikl~~~~~~~~~-v~~~~g~~~~i~~--~~~~~~G~~v~~~G~~~g----~t~G~v~~~~~~v~--------~~  124 (187)
T 1hpg_A           60 TNDYGIVRYTDGSSPAGT-VDLYNGSTQDISS--AANAVVGQAIKKSGSTTK----VTSGTVTAVNVTVN--------YG  124 (187)
T ss_dssp             BSCEEEEEECSSCCCCSE-EECSSSCEEECCE--ECCCCTTCEEEEEETTTE----EEEEEEEEEEEEEE--------ET
T ss_pred             CCCEEEEEeCCCCCcCce-EEecCCceeeecc--ccCCCCCCEEEEEEcCCC----EeEEEEEEeEEEEE--------eC
Confidence            479999999986554322 221     33322  224578999999998731    11223333333321        11


Q ss_pred             CCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHHHH
Q psy16044        356 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       356 ~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~WI  425 (436)
                      .  ....+++|+.     ...|.|||||||++.   +  .++||.||+.. |.. ..|.+|++|..+++.+
T Consensus       125 ~--~~~~~~i~t~-----~~~~~GdSGgpl~~~---~--~~vGi~s~~~~~~~~-~~~~~~~~i~~~~~~l  182 (187)
T 1hpg_A          125 D--GPVYNMVRTT-----ACSAGGDSGGAHFAG---S--VALGIHSGSSGCSGT-AGSAIHQPVTEALSAY  182 (187)
T ss_dssp             T--EEEEEEEEEC-----CCCCTTCTTCEEEET---T--EEEEEEEEESCCBTT-BCCCEEEEHHHHHHHH
T ss_pred             C--CeEeeeEEec-----cccCCCCCCCeEEEC---C--EEEEEEEeeCCCCCC-CCceEEEEHHHHHHHc
Confidence            1  1134578874     257899999999974   2  59999999975 654 5699999999887765

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=98.68  E-value=5e-09  Score=89.81  Aligned_cols=117  Identities=21%  Similarity=0.223  Sum_probs=71.8

Q ss_pred             ccccceeecccccccCCCCee-----eeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVR-----AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYG  355 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~-----picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  355 (436)
                      .+|+|||||+.+...... ++     +++|+...  .+..++.+.  .||++.       -++...+..++...+... .
T Consensus        54 ~~DiAlikl~~~~~~~~~-v~~~~g~~v~l~~s~--~~~vG~~v~--~~G~~t-------G~t~G~Vs~~~~~v~~~~-~  120 (189)
T 2ea3_A           54 GNDYAFVRTGAGVNLLAQ-VNNYSGGRVQVAGHT--AAPVGSAVC--RSGSTT-------GWHCGTITALNSSVTYPE-G  120 (189)
T ss_dssp             BSCEEEEEECTTCEEEEE-EECSSSCEEECCBCC--CCCTTCEEE--EEETTT-------EEEEEEEEEEEEEEEETT-E
T ss_pred             CCCEEEEEECCCCccccc-eEecCCceeecCCCc--CCCCCCEEE--EEEeCC-------ccEEEEEEecceEEEeCC-c
Confidence            579999999988654443 54     66776533  245666554  455321       133344444433322100 0


Q ss_pred             CCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHHHH
Q psy16044        356 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       356 ~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~WI  425 (436)
                      ....+...++|+.         .|||||||++.   +  .++||.||+.. |.. ..+.+|++|..+++|.
T Consensus       121 ~~~~~~~~~~~~~---------~GDSGgpl~~~---~--~~vGi~s~~~~~c~~-~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          121 TVRGLIRTTVCAE---------PGDSGGSLLAG---N--QAQGVTSGGSGNCRT-GGTTFFQPVNPILQAY  176 (189)
T ss_dssp             EEEEEEEESCCCC---------TTCTTCEEEET---T--EEEEEEEEEEEETTT-EEEEEEEEHHHHHHHH
T ss_pred             cCcceEEeeeecc---------CCCccCeEEEC---C--EEEEEEeecCCCCCC-CCcEEEEEHHHHHHHC
Confidence            0001233456653         69999999963   3  49999999976 544 4589999999999887

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.64  E-value=2.1e-07  Score=90.89  Aligned_cols=143  Identities=21%  Similarity=0.238  Sum_probs=84.8

Q ss_pred             CeeeEEEEecCC--EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCC
Q psy16044         55 PHWCGAVLIHPS--WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSR  132 (436)
Q Consensus        55 ~~~C~GtLIs~~--~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~  132 (436)
                      ...|+|.+|+++  ||||++||+.+.       ..+.|.+...         ..+..+-+..++.     .||||||++.
T Consensus        85 ~~~GSG~ii~~~~g~IlTn~HVv~~a-------~~i~V~~~dg---------~~~~a~vv~~d~~-----~DlAvlkv~~  143 (448)
T 1ky9_A           85 MALGSGVIIDADKGYVVTNNHVVDNA-------TVIKVQLSDG---------RKFDAKMVGKDPR-----SDIALIQIQN  143 (448)
T ss_dssp             EEEEEEEEEETTTTEEEEEHHHHTTE-------EEEEEEETTS---------CEEEEEEEEEETT-----TTEEEEEESS
T ss_pred             ccEEEEEEEECCCCEEEEChHHhCCC-------CEEEEEECCC---------CEEEEEEEEEcCC-----CCEEEEEecC
Confidence            467999999985  999999999652       4566666421         2233333344444     7999999986


Q ss_pred             CCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCC
Q psy16044        133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD  212 (436)
Q Consensus       133 ~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~  212 (436)
                      +-.     +.++.|.+.  ..+..++.+.++||.....     .......+.-+....    ..  ......++++.   
T Consensus       144 ~~~-----~~~~~l~~s--~~~~~G~~V~aiG~P~g~~-----~tvt~Givs~~~r~~----~~--~~~~~~~iqtd---  202 (448)
T 1ky9_A          144 PKN-----LTAIKMADS--DALRVGDYTVAIGNPFGLG-----ETVTSGIVSALGRSG----LN--AENYENFIQTD---  202 (448)
T ss_dssp             CCS-----CCCCCBCCG--GGCCTTCEEEEEECTTSSS-----CEEEEEEEEEESSCC-----------CCCCEEES---
T ss_pred             CCC-----CceEEeccc--ccCCCCCEEEEEECCCCCC-----CeEEeEEEeeccccc----cC--CCCccCEEEEc---
Confidence            422     455666542  3456789999999753221     111111121111110    00  00112445553   


Q ss_pred             CCCCCccCCCCCeeeeEecCCcEEEEEEEeEcC
Q psy16044        213 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS  245 (436)
Q Consensus       213 ~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~  245 (436)
                        ...+.|+|||||+..  +|+  ++||.+...
T Consensus       203 --a~i~~GnSGGpl~n~--~G~--vvGI~~~~~  229 (448)
T 1ky9_A          203 --AAINRGNAGGALVNL--NGE--LIGINTAIL  229 (448)
T ss_dssp             --CCCTTSCCCSEEECT--TSC--EEEEEECSS
T ss_pred             --CCCCCCCCCCeeECC--CCE--EEEEEEEee
Confidence              567899999999953  453  999999764

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.56  E-value=3.2e-07  Score=86.83  Aligned_cols=128  Identities=17%  Similarity=0.122  Sum_probs=83.7

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCcc
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE  359 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  359 (436)
                      ..+||||||++.|..   . ++|++|+....  +..++.+++.||+....     ..+....+..+....|......   
T Consensus        98 ~~~DlAlLkl~~~~~---~-~~~i~l~~s~~--~~~G~~v~~iG~p~g~~-----~~~~~g~vs~~~~~~~~~~~~~---  163 (348)
T 3qo6_A           98 QDKDVAVLRIDAPKN---K-LRPIPVGVSAD--LLVGQKVFAIGNPFGLD-----HTLTTGVISGLRREISSAATGR---  163 (348)
T ss_dssp             GGGTEEEEECCCCGG---G-CCCCCBCCSTT--CCTTCEEEEEECGGGCT-----TEEEEEEEEEEEEEECCSSSSS---
T ss_pred             CcCCEEEEEEcCCCC---C-ceeEEecCccc--CCCCCEEEEEECCCCCC-----CcEeEEEEEeeccccccccCCC---
Confidence            357999999998732   2 78899976543  56899999999986432     2233334444433333322111   


Q ss_pred             CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        360 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       360 ~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      ....+++..     ...|.|||||||+..  +|+  |+||.|++.. ++.....+.+..+...++||++.++
T Consensus       164 ~~~~~i~~d-----a~i~~G~SGGPLvn~--~G~--vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~  226 (348)
T 3qo6_A          164 PIQDVIQTD-----AAINPGNSGGPLLDS--SGT--LIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVR  226 (348)
T ss_dssp             CEEEEEEEC-----SCCCTTCTTCEEECT--TSC--EEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             cccCEEEEe-----CCcCCCCcHHHhhCC--CCe--EEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHh
Confidence            011233331     367899999999963  444  9999999753 4433457888999999999988765

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=98.53  E-value=1.5e-07  Score=83.98  Aligned_cols=127  Identities=17%  Similarity=0.138  Sum_probs=77.6

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCcc
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE  359 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  359 (436)
                      ..+||||||++.+.   .. +.|++|+...  .+..++.+++.||+....     .   .+..-+++...|.-.......
T Consensus       101 ~~~DlAllkl~~~~---~~-~~~~~l~~s~--~~~~G~~v~~iG~p~g~~-----~---~vt~Givs~~~r~~~~~~~~~  166 (239)
T 1l1j_A          101 EELDIAVIKIKASD---KK-FPYLEFGDSD--KVKIGEWAIAIGNPLGFQ-----H---TVTVGVVSATNRRIPKPDGSG  166 (239)
T ss_dssp             TTTTEEEEEBCCSS---SC-CCCCEECCGG--GCCTTCEEEEEECTTSSS-----C---EEEEEEEEEEEEEEECTTSSC
T ss_pred             CCCCEEEEEEcCCC---CC-CceEEecCcc--CCccccEEEEEECCCCCC-----C---cEEEEEEeccccccccCCCcc
Confidence            46899999999875   23 8889998643  246899999999985321     1   222223333333211100000


Q ss_pred             CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        360 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       360 ~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      ....++|+.     ...|.|||||||+..  +|  .|+||.|++..-......+...-+...++++++.+
T Consensus       167 ~~~~~i~td-----a~i~~G~SGGPLv~~--~G--~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~  227 (239)
T 1l1j_A          167 YYVGLIQTD-----AAINPGNSGGPLLNI--HG--EVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL  227 (239)
T ss_dssp             EEEEEEEES-----SCCCTTTTTSEEECS--SS--EEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred             ccCCEEEEC-----CCCCCCCccHHhccC--CC--eEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHH
Confidence            124578873     368999999999963  34  39999999865111112455666666666665544

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=98.49  E-value=1.6e-07  Score=83.91  Aligned_cols=102  Identities=19%  Similarity=0.184  Sum_probs=62.5

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL  360 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  360 (436)
                      .+|||||||+.     .. ++|++|+..   ....++.+++.||+....     ..+....+.......|...+......
T Consensus       102 ~~DiAll~l~~-----~~-~~~~~l~~~---~~~~G~~v~v~G~p~g~~-----~~~~~g~v~~~~~~~~~~~~~~~~~~  167 (237)
T 3k6y_A          102 SVDVAILAVPH-----LP-PPPLVFAAE---PAKTGADVVVLGYPGGGN-----FTATPARIREAIRLSGPDIYGDPEPV  167 (237)
T ss_dssp             TTTEEEEECTT-----CC-SCCCCBCSS---CCCTTCEEEEEECGGGCS-----CEEEEEEEEEEEEEEECCTTCCSSCE
T ss_pred             CCCEEEEEeCC-----CC-CCceecCCC---CCCCCCEEEEEECCCCCC-----CccceeEEEeeEeecccccccCCCcc
Confidence            58999999982     23 889999832   457899999999985321     12233333333333444433221001


Q ss_pred             CCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC
Q psy16044        361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  405 (436)
Q Consensus       361 ~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~  405 (436)
                      ...+++.     ....|.|||||||++.  +|+  |+||+|++..
T Consensus       168 ~~~~~~~-----~~~~~~GdSGGPLv~~--~G~--vvGI~s~~~~  203 (237)
T 3k6y_A          168 TRDVYTI-----RADVEQGDSGGPLIDL--NGQ--VLGVVFGAAI  203 (237)
T ss_dssp             EEEEEEE-----ESCCCTTCTTCEEECT--TSC--EEEEEEEECS
T ss_pred             cccEEEe-----cCccCCCccHHHEECC--CCE--EEEEEEeecc
Confidence            1122332     1368999999999963  344  9999999753

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=98.46  E-value=2.2e-07  Score=82.58  Aligned_cols=122  Identities=15%  Similarity=0.116  Sum_probs=70.1

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL  360 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  360 (436)
                      .+|||||+++.+..     +.+++|+...  ....++.+++.||+...     ...+....+.-.....+...+.   ..
T Consensus       109 ~~DlAlL~l~~~~~-----~~~~~l~~~~--~~~~G~~v~~~G~p~g~-----~~~~~~g~vs~~~~~~~~~~~~---~~  173 (231)
T 3tjo_A          109 KADIALIKIDHQGK-----LPVLLLGRSS--ELRPGEFVVAIGSPFSL-----QNTVTTGIVSTTQRGGKELGLR---NS  173 (231)
T ss_dssp             TTTEEEEECCCSSC-----CCCCCBCCGG--GCCTTCEEEEEEEEETT-----EEEEEEEEEEECC--------------
T ss_pred             CCCEEEEEecCCCC-----CCceecCCcC--CCCCCCEEEEEECCCCC-----CCceeeEEEeeccccccccccC---CC
Confidence            58999999997632     6777776543  24679999999998532     1112222222222111111111   01


Q ss_pred             CCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       361 ~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      ...+++..     ...|.|||||||+..  +|+  |+||.||+..++    ......+...++|+++..+
T Consensus       174 ~~~~i~~d-----a~i~~G~SGGPLv~~--~G~--vVGI~s~~~~~g----~~~aip~~~i~~~l~~~~~  230 (231)
T 3tjo_A          174 DMDYIQTD-----AIINYGNAGGPLVNL--DGE--VIGINTLKVTAG----ISFAIPSDKIKKFLTESHD  230 (231)
T ss_dssp             --CCEEES-----SCCCTTTTTSEEECT--TSC--EEEEEEEEEETT----EEEEEEHHHHHHHHHHHHT
T ss_pred             cccEEEEc-----CCcCCCCchhHeecC--CCe--EEEEEeEEecCC----eEEEEEHHHHHHHHHHHhh
Confidence            12345542     257889999999953  344  999999986432    3455666667777766543

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=98.45  E-value=6.2e-07  Score=77.35  Aligned_cols=27  Identities=44%  Similarity=0.713  Sum_probs=21.1

Q ss_pred             cCCCCCeeeeEecCCcEEEEEEEeEcC-----CCCC
Q psy16044        219 IGDSGGPLQCSLKDGRWYLAGITSFGS-----GYCG  249 (436)
Q Consensus       219 ~gDsGgPl~~~~~~~~~~l~GI~S~g~-----~~C~  249 (436)
                      +|||||||+..  ++  .++||+|++.     +.|.
T Consensus       140 ~GDSGGPl~~~--~g--~~vGI~s~~~~~~~~~~c~  171 (198)
T 2h5c_A          140 RGDSGGSWITS--AG--QAQGVMSGGNVQSNGNNCG  171 (198)
T ss_dssp             TTCTTCEEECT--TC--BEEEEEEEECCCTTSBSTT
T ss_pred             CCcceeEEEee--CC--EEEEEEEeecCccCCCccc
Confidence            79999999931  33  4999999986     6673

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=98.29  E-value=4.7e-06  Score=69.27  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=48.5

Q ss_pred             CeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCC
Q psy16044         55 PHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPT  134 (436)
Q Consensus        55 ~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~  134 (436)
                      ...++|.+| +.+|||++||+.+.       ..+.|.++          ...+..+ +...|     ..||||||++.+.
T Consensus        20 ~~~GSGfii-~g~IlTn~HVV~~~-------~~i~V~~d----------g~~~~a~-vv~d~-----~~DlAlLkv~~~~   75 (163)
T 2w5e_A           20 EGKGTGFFS-GNDIVTAAHVVGNN-------TFVNVCYE----------GLMYEAK-VRYMP-----EKDIAFITCPGDL   75 (163)
T ss_dssp             TEEEEEEEE-TTEEEEEHHHHTTC-------SEEEEEET----------TEEEEEE-EEECC-----SSSEEEEECCTTC
T ss_pred             ceeEEEEEE-CCEEEecHHHhCCC-------ceEEEEEC----------CEEEEEE-EEEEC-----CCCEEEEEecCCC
Confidence            567999999 89999999999653       34555541          1223333 22333     4799999998643


Q ss_pred             CCCCCceeeeeecCCCCCCCCCCCcEEEEecC
Q psy16044        135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWG  166 (436)
Q Consensus       135 ~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG  166 (436)
                          ..+.|+.|....     ......++|+.
T Consensus        76 ----~~~~~l~l~~~~-----~~~~v~~~G~p   98 (163)
T 2w5e_A           76 ----HPTARLKLSKNP-----DYSCVTVMAYV   98 (163)
T ss_dssp             ----CCSCCCCBCSSC-----CTTEEEEEEEE
T ss_pred             ----CCcceEEcCCCC-----CCCEEEEEEeC
Confidence                123444554421     12566777764

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=98.26  E-value=4.1e-07  Score=77.57  Aligned_cols=115  Identities=18%  Similarity=0.276  Sum_probs=64.1

Q ss_pred             ccccceeecccccccCCCCee-----eeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVR-----AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYG  355 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~-----picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  355 (436)
                      .+|+||||++.+...... ++     ++.+....  .+..++.+...|.-.    .........+...+.-   ....+.
T Consensus        57 ~~D~Alikl~~~~~~~~~-v~~~~g~~~~i~~~~--~~~vG~~vc~~G~~t----G~t~G~vs~~~~tv~~---~~~~~~  126 (186)
T 2pfe_A           57 GRDMGWVRITSADTVTPL-VNRYNGGTVTVTGSQ--EAATGSSVCRSGATT----GWRCGTIQSKNQTVRY---AEGTVT  126 (186)
T ss_dssp             BSCEEEEEECTTSEEEEE-EECSSSCEEECCBCC--CCCTTCEEEEEETTT----EEEEEEEEEEEEEEEE---TTEEEE
T ss_pred             CCCEEEEEeCCCcccccc-eeccCCceEecCCCC--CCCCCCeEEEEEeCC----ceEEEEEEEEeeeEEe---CCceEe
Confidence            479999999987543332 33     34444322  345677655444321    0011122222222210   011111


Q ss_pred             CCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHH
Q psy16044        356 DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       356 ~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~  423 (436)
                         .+...++|+.         .|||||||++.   +  .++||+||+.. |.. ..+.+|++|...++
T Consensus       127 ---~~~~~~~c~~---------~GDSGgpl~~~---~--~~vGi~s~g~~~c~~-~~~~~~~pi~~~l~  177 (186)
T 2pfe_A          127 ---GLTRTTACAE---------GGDSGGPWLTG---S--QAQGVTSGGTGDCRS-GGITFFQPINPLLS  177 (186)
T ss_dssp             ---EEEEESCCCC---------TTCTTCEEEET---T--EEEEEEEEEEEETTT-EEEEEEEEHHHHHH
T ss_pred             ---ceEeccEEec---------CCCccCeEEEC---C--EEEEEEeecCCCCCC-CCcEEEEEHHHHHH
Confidence               1234567764         59999999973   2  49999999875 544 44899999886654

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.24  E-value=5.2e-06  Score=77.72  Aligned_cols=127  Identities=12%  Similarity=0.013  Sum_probs=75.7

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccC---C
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYG---D  356 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~---~  356 (436)
                      ..+|||||+++.+    .. +.|++|+...  .+..++.+++.||..-...        .+..-+++...+.....   .
T Consensus        85 ~~~DlAllkl~~~----~~-~~~~~l~~~~--~~~~G~~v~~~G~p~g~~~--------~~~~G~vs~~~~~~~~~~~~g  149 (324)
T 1y8t_A           85 PTSDIAVVRVQGV----SG-LTPISLGSSS--DLRVGQPVLAIGSPLGLEG--------TVTTGIVSALNRPVSTTGEAG  149 (324)
T ss_dssp             TTTTEEEEEECSC----CS-CCCCEECCST--TCCTTCEEEEEECGGGCTT--------EEEEEEEEEEEEEECC-----
T ss_pred             CCCCEEEEEECCC----CC-CceEEecCcc--cCCCCCEEEEEEcCCCCCC--------cEeeeEEeecccccccccccC
Confidence            3689999999987    22 7899997543  3468999999999532111        11111222111111000   0


Q ss_pred             CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCC--------CCCCCeEEEeCcccHHHHHHH
Q psy16044        357 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCA--------KSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       357 ~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~--------~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      .......++|+.     ...|.|||||||+..  +|  .|+||.||+..-.        .......+.-+...++++.+.
T Consensus       150 ~~~~~~~~i~~d-----~~~~~G~SGGPlv~~--~G--~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l  220 (324)
T 1y8t_A          150 NQNTVLDAIQTD-----AAINPGNSGGALVNM--NA--QLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADEL  220 (324)
T ss_dssp             --CCCEEEEEEC-----SCCCTTCTTEEEECT--TS--EEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHH
T ss_pred             cccccCCEEEEc-----CCCCCCCccCcEECC--CC--eEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHH
Confidence            001235688873     368999999999963  34  3999999975321        111245667777777777665


Q ss_pred             Hh
Q psy16044        429 IN  430 (436)
Q Consensus       429 i~  430 (436)
                      ++
T Consensus       221 ~~  222 (324)
T 1y8t_A          221 IS  222 (324)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=98.22  E-value=7.8e-06  Score=72.81  Aligned_cols=123  Identities=15%  Similarity=0.094  Sum_probs=74.1

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL  360 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  360 (436)
                      .+|||||+++.+..     +.+++|+...  ....++.+++.||+....     ..+....+..+....+..      ..
T Consensus        99 ~~DlAll~l~~~~~-----~~~~~l~~~~--~~~~G~~v~~~G~p~~~~-----~~~~~g~vs~~~~~~~~~------~~  160 (237)
T 3lgi_A           99 LTDLAVLKINATGG-----LPTIPINARR--VPHIGDVVLAIGNPYNLG-----QTITQGIISATGRIGLNP------TG  160 (237)
T ss_dssp             TTTEEEEECCCSSC-----CCCCCCCTTC--CCCTTBEEEEEECGGGSC-----SEEEEEEEEEECCSSCCT------TS
T ss_pred             CCCEEEEEecCCCC-----CceEeccCcc--cCCCCCEEEEEECCCCCC-----CcEEEEEEEecccccccC------CC
Confidence            47999999998652     6777887532  356899999999985321     122223333222222211      11


Q ss_pred             CCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCC----CCCCeEEEeCcccHHHHHHHHh
Q psy16044        361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAK----SGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       361 ~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~----~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      ....++..     ...|.|||||||+..  +|+  |+||.||+..-..    .........+...++++++.++
T Consensus       161 ~~~~i~~d-----~~i~~G~SGGPlv~~--~G~--vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~  225 (237)
T 3lgi_A          161 RQNFLQTD-----ASINHGNSGGALVNS--LGE--LMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  225 (237)
T ss_dssp             CSCCEEEC-----SCCCTTCTTCEEECT--TCC--EEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             cCCEEEEc-----CccCCCCchHHeeCC--CCe--EEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHH
Confidence            23345442     257999999999963  444  9999999754321    1123555666666777766664

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.17  E-value=3.8e-06  Score=78.58  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCcc
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE  359 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  359 (436)
                      ..+|+||||++.+.    . +.|++|+...  ....++.+++.||+....        +.+..-+++...|.........
T Consensus        92 ~~~DlAllkl~~~~----~-~~~~~l~~~~--~~~~G~~v~~~G~p~~~~--------~~v~~G~vs~~~~~~~~~g~~~  156 (325)
T 1lcy_A           92 PVADIATLRIQTKE----P-LPTLPLGRSA--DVRQGEFVVAMGSPFALQ--------NTITSGIVSSAQRPARDLGLPQ  156 (325)
T ss_dssp             TTTTEEEEECCCSS----C-CCCCCBCCGG--GCCTTCEEEECCCTTSSS--------SCCEEEEBCSCSCC--------
T ss_pred             CCCCEEEEEEcCCC----C-CceEEecccc--cCCCCCEEEEEECCCCCC--------CcEEeEEEecccccccccCCCC
Confidence            46899999999763    2 7788887542  346799999999996421        2344556666667532111112


Q ss_pred             CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC
Q psy16044        360 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS  404 (436)
Q Consensus       360 ~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~  404 (436)
                      ....++|+.     ...|.|||||||+..  +|+  |+||.||+.
T Consensus       157 ~~~~~i~~d-----~~~~~G~SGGPl~~~--~G~--vVGI~s~~~  192 (325)
T 1lcy_A          157 TNVEYIQTD-----AAIDFGNAGGPLVNL--DGE--VIGVNTMKV  192 (325)
T ss_dssp             -CCCCEEES-----SCCSTTTTTSEEEET--TSC--EEEEEEEEE
T ss_pred             CCCCEEEEc-----CCCCCCCccccEECC--CCE--EEEEEeEee
Confidence            356789984     367999999999853  444  999999975

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.08  E-value=2.3e-05  Score=73.08  Aligned_cols=124  Identities=15%  Similarity=0.082  Sum_probs=77.1

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCcc
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE  359 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  359 (436)
                      ..+|+|||+++.+    .. +.|++|+...  .+..++.+++.||..-..     .   .+..-+++.... ..+..  .
T Consensus        87 ~~~DlAllk~~~~----~~-~~~~~l~~~~--~~~~G~~v~~~G~p~g~~-----~---~~~~g~vs~~~~-~~~~~--~  148 (318)
T 1te0_A           87 SLTDLAVLIIKAT----GG-LPTIPINARR--VPHIGDVVLAIGNPYNLG-----Q---TITQGIISATGR-IGLNP--T  148 (318)
T ss_dssp             TTTTEEEEECCCS----SC-CCCCCCCTTC--CCCTTCEEEEECCCSSSS-----C---CEEEEEEEECCC-CCCCT--T
T ss_pred             CCceEEEEEEeCC----CC-CceEEeeCcc--CCCCCCEEEEEEcCCCCC-----C---cEEeeEEecccc-cccCC--C
Confidence            4689999999986    22 7788887533  356899999999764211     1   122223322221 11111  1


Q ss_pred             CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCC----CCCCCeEEEeCcccHHHHHHHHh
Q psy16044        360 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCA----KSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       360 ~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~----~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      ....++|..     ...|.|||||||+..  +|+  |+||.||+..-.    .......+.-+.....|+++.++
T Consensus       149 ~~~~~i~~d-----~~~~~G~SGGPl~~~--~G~--vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~  214 (318)
T 1te0_A          149 GRQNFLQTD-----ASINHGNSGGALVNS--LGE--LMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  214 (318)
T ss_dssp             CSCCSEEES-----SCCCTTTTTSEEECT--TCC--EEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             CcCCEEEEC-----CCCCCCCCcCceECC--CCe--EEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHH
Confidence            245688873     367999999999963  444  999999986421    11224566777777777776553

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.08  E-value=1e-05  Score=75.86  Aligned_cols=121  Identities=15%  Similarity=0.118  Sum_probs=66.8

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL  360 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  360 (436)
                      .+|||||+++.+..     +.++.|+...  .+..++.+++.||+....     ..+....+.......+...+..   .
T Consensus        92 ~~DlAlL~l~~~~~-----~~~~~l~~~~--~~~~G~~v~~~G~p~g~~-----~~~~~g~vs~~~~~~~~~~~~~---~  156 (332)
T 3num_A           92 KADIALIKIDHQGK-----LPVLLLGRSS--ELRPGEFVVAIGSPFSLQ-----NTVTTGIVSTTQRGGKELGLRN---S  156 (332)
T ss_dssp             TTTEEEEEECCSSC-----CCCCCBCCTT--SCCTTCEEEEECC----------CCEEEEEEEEC---------------
T ss_pred             CCCeEEEEEcCCCC-----CceeeecCcc--cCCCCCEEEEEECCCCCC-----cceeeeEEEeecccccccCcCC---C
Confidence            47999999998622     6677776543  356799999999985321     1222222332222222221111   1


Q ss_pred             CCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       361 ~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      ...+++..     ...|.|||||||+..  +|+  |+||.||+...+    .+....+.....|+.+.+
T Consensus       157 ~~~~i~~d-----~~i~~G~SGGPlv~~--~G~--vvGI~s~~~~~g----~~~aip~~~i~~~l~~~~  212 (332)
T 3num_A          157 DMDYIQTD-----AIINYGNAGGPLVNL--DGE--VIGINTLKVTAG----ISFAIPSDKIKKFLTESH  212 (332)
T ss_dssp             --CCEEES-----SCCCTTTTTSEEEET--TSC--EEEEEEEEEETT----EEEEEEHHHHHHHHHHHC
T ss_pred             cCCEEEEE-----CCcCCCCcHHHhhCC--CCc--EEEEEeeEeccc----ceEEECHHHHHHHHHHHh
Confidence            12344442     256789999999963  344  999999976422    345566666666666543

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=97.98  E-value=4.4e-05  Score=68.07  Aligned_cols=124  Identities=17%  Similarity=0.109  Sum_probs=72.2

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL  360 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  360 (436)
                      .+||||||++.+..     +.++.|....  .+..++.+++.||..-..     .   .+..-+++...+.. +..  ..
T Consensus       110 ~~DlAlLkv~~~~~-----~~~~~l~~s~--~~~~G~~v~aiG~P~g~~-----~---~vt~G~vs~~~~~~-~~~--~~  171 (245)
T 3sti_A          110 QSDIALLQIQNPSK-----LTQIAIADSD--KLRVGDFAVAVGNPFGLG-----Q---TATSGIVSALGRSG-LNL--EG  171 (245)
T ss_dssp             TTTEEEEEESSCCS-----CCCCCBCCGG--GCCTTBEEEEEECGGGSC-----C---EEEEEEEEECSSCS-SCC--TT
T ss_pred             CCCEEEEEeccCCC-----CceeeecCcC--CCCCCCEEEEEECCCCCC-----C---cEEeeEEeeecccc-cCC--CC
Confidence            57999999986532     5667776432  356899999999753211     1   12222333222221 111  12


Q ss_pred             CCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCC-CCCCCeEEEeCcccHHHHHHHHhh
Q psy16044        361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCA-KSGYPDVYTKLSFYLPWIRKQINI  431 (436)
Q Consensus       361 ~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~-~~~~p~v~t~V~~~~~WI~~~i~~  431 (436)
                      ...++|..     ...|.|+|||||+..  +|+  |+||.|+..... .....+...-+...++++++.++.
T Consensus       172 ~~~~i~td-----a~i~~G~SGGPLvn~--~G~--vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~  234 (245)
T 3sti_A          172 LENFIQTD-----ASINRGNSGGALLNL--NGE--LIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDF  234 (245)
T ss_dssp             CSSCEEES-----SCCCTTTTTSEEECT--TSC--EEEEEECCC------CCCEEEEEHHHHHHHHHHHHHH
T ss_pred             ccCEEEEc-----CCcCCCcchhHeecC--CCe--EEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHHc
Confidence            34556653     257889999999853  444  999999976432 112245556666667777666643

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=97.94  E-value=3.7e-06  Score=71.88  Aligned_cols=115  Identities=20%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             ccccceeecccccccCCCCeee------eccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccccccc
Q psy16044        281 FLSAALLKLSRPTSARDKGVRA------VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY  354 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~p------icl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  354 (436)
                      .+|+||||++.+...... +++      +.|+...  .+..++.+...|.-.    ......+..+...+...+   ..+
T Consensus        59 ~~DiAlikl~~~~~~~~~-v~~~g~~~~~~l~~~~--~~~vG~~v~~~G~~t----G~t~G~v~~~~~~v~~~~---~~~  128 (188)
T 2oua_A           59 GNDAAFVRGTSNFTLTNL-VSRYNSGGYATVSGSS--TAPIGSQVCRSGSTT----GWYCGTIQARNQTVSYPQ---GTV  128 (188)
T ss_dssp             BSCEEEEEEEESCEEEEE-EECGGGCSEEECCBCC--CCCTTCEEEEEETTT----EEEEEEEEEEEEEEEETT---EEE
T ss_pred             CCCEEEEEeCCCCccccc-eeecCCcceEeccCcc--CCCCCCeEEEEEcCC----CeEEEEEEEEeeEEEeCC---CcE
Confidence            379999999887543222 332      3454322  355677666654210    001112222222221000   001


Q ss_pred             CCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHH
Q psy16044        355 GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       355 ~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~  423 (436)
                      .   .+...++|+.         .|||||||++.   +  .++||.||+.. |.. ..+.+|++|...++
T Consensus       129 ~---~~~~~~~~~~---------~GDSGgpl~~~---~--~~vGi~s~~~~~~~~-~~~~~~~pi~~~l~  180 (188)
T 2oua_A          129 H---SLTRTSVCAE---------PGDSGGSFISG---T--QAQGVTSGGSGNCRT-GGTTFYQEVNPMLN  180 (188)
T ss_dssp             E---EEEEESCCCC---------TTCTTCEEEET---T--EEEEEEEEEEEETTT-EEEEEEEESHHHHH
T ss_pred             e---eeEeeeeecC---------CCCccceEEEC---C--EEEEEEeccCCCCCC-CCceEEEEHHHHHH
Confidence            0   1223456653         59999999963   3  49999999874 654 34789999876554

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.80  E-value=0.00011  Score=72.49  Aligned_cols=86  Identities=19%  Similarity=0.212  Sum_probs=53.2

Q ss_pred             eeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCCC
Q psy16044         56 HWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTS  135 (436)
Q Consensus        56 ~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~  135 (436)
                      ..-+|.+|++.+|||.+|++.+.       ..+.|.+-.    .    ...+..+-+...|.     .||||||++.+-.
T Consensus        74 s~GSGfiI~dG~IlTN~HVV~~a-------~~i~V~~~~----d----g~~~~A~vv~~D~~-----~DLAvLkv~~~~~  133 (539)
T 4fln_A           74 STGSAFMIGDGKLLTNAHCVEHD-------TQVKVKRRG----D----DRKYVAKVLVRGVD-----CDIALLSVESEDF  133 (539)
T ss_dssp             EEEEEEEEETTEEEECGGGGTTE-------EEEEEECTT----C----CCCEEEEEEEEETT-----TTEEEEEECCSSS
T ss_pred             eEEEEEEEECCEEEEChHHcCCC-------CeEEEEEcc----C----CEEEEEEEEEECCC-----CCEEEEEEeCCcC
Confidence            45789999999999999998652       445554421    0    11223333334444     6999999986532


Q ss_pred             CCCCceeeeeecCCCCCCCCCCCcEEEEecCc
Q psy16044        136 ARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  167 (436)
Q Consensus       136 ~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~  167 (436)
                        ...+.|+.+..    ....+..+.++|+-.
T Consensus       134 --~~~~~pl~~g~----~~~vGd~V~aiG~P~  159 (539)
T 4fln_A          134 --WKGAEPLRLGH----LPRLQDSVTVVGYPL  159 (539)
T ss_dssp             --STTCCCCCBCC----CCCTTCEEEEEECCS
T ss_pred             --CcCCceeecCC----cCcCCCeEEEEEcCC
Confidence              12244555543    234578899999753

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=97.79  E-value=7.9e-05  Score=77.60  Aligned_cols=84  Identities=19%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             eEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCCCCC
Q psy16044         58 CGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSAR  137 (436)
Q Consensus        58 C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~  137 (436)
                      =.+|||+|+||+|+||=. ..         -.|.+|..        ...+   +++.|++|..  .|+++.||.+.+.- 
T Consensus        58 G~aTLI~pqYiVSvaHn~-gy---------~~v~fG~~--------~n~Y---~iV~rnn~~~--~Dy~~pRL~K~VTE-  113 (1048)
T 1wxr_A           58 GVATLINPQYIASVKHNG-GY---------TNVSFGDG--------ENRY---NIVDRNNAPS--LDFHAPRLDKLVTE-  113 (1048)
T ss_dssp             CCCEEEETTEEEBCTTCC-SC---------CEECCTTS--------CCCE---EEEECCBCSS--SSCBCCEESSCCCS-
T ss_pred             ceEEEEcCcEEEEeeecC-CC---------ceEEeCCC--------cceE---EEEeeCCCCC--CCeeeeeccccccc-
Confidence            468999999999999932 11         24556640        0122   2367777753  49999999998872 


Q ss_pred             CCceeeeeecCCC-----CCCCCCCCcEEEEecCcc
Q psy16044        138 DKGVRAVCLTDAD-----KRPVNPKQQCVATGWGRV  168 (436)
Q Consensus       138 ~~~v~pi~l~~~~-----~~~~~~~~~~~~~GwG~~  168 (436)
                         +.|+.+....     ..........+-+|=|..
T Consensus       114 ---vaP~~~t~~g~~~~~y~d~ery~~f~RvGsG~q  146 (1048)
T 1wxr_A          114 ---VAPTAVTAQGAVAGAYLDKERYPVFYRLGSGTQ  146 (1048)
T ss_dssp             ---SCCCCBCSSCSCTTGGGCTTTCCCEEEEECSCE
T ss_pred             ---ccceeeccccCccccccccccCceEEEECCcEE
Confidence               7787776542     111234556677787765

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=97.78  E-value=4.3e-05  Score=64.80  Aligned_cols=31  Identities=16%  Similarity=0.015  Sum_probs=24.1

Q ss_pred             eEEEeeeccCCCCCCeeeEEEEe---cCCEEEecCCCcCC
Q psy16044         41 QVSLQVLHPRLGLMPHWCGAVLI---HPSWVVTAAHCIHN   77 (436)
Q Consensus        41 ~v~i~~~~~~~~~~~~~C~GtLI---s~~~VLTAAhC~~~   77 (436)
                      ++.|+..+      .|+|.|+.+   ..+++||||||+..
T Consensus        18 vv~l~~~d------~h~G~g~~V~~~G~~~LlTA~Hv~~~   51 (191)
T 1zyo_A           18 LVAIKSGP------TTIGFGCRTKIDGEDCLLTAHHVWCN   51 (191)
T ss_dssp             EEEEEETT------EEEEEEEEEEC--CEEEEECHHHHTS
T ss_pred             EEEEEeCC------eEEEEEEEEEECCCcEEEEChhhCcC
Confidence            66665532      789999999   56899999999855

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=97.21  E-value=0.0023  Score=60.06  Aligned_cols=121  Identities=17%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL  360 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  360 (436)
                      ..||||||++.+..     +.++.|....  .+..++.+++.||..-..        ..+..-+++...+.. +..  ..
T Consensus       110 ~~DlAlLkv~~~~~-----~~~~~l~~s~--~~~~G~~V~aiG~p~g~~--------~~vt~G~Vs~~~~~~-~~~--~~  171 (345)
T 3stj_A          110 QSDIALLQIQNPSK-----LTQIAIADSD--KLRVGDFAVAVGNPFGLG--------QTATSGIVSALGRSG-LNL--EG  171 (345)
T ss_dssp             TTTEEEEEESSCCS-----CCCCCBCCGG--GCCTTBEEEEEECGGGCS--------CEEEEEEEEEEEECC-SSS--SS
T ss_pred             CCCEEEEEEcccCC-----CceEeecCcc--cCCCCCEEEEEECCCCCC--------CcEEeeEEeeecccc-cCC--CC
Confidence            47999999976532     5566665432  356899999999964221        112222232222221 111  11


Q ss_pred             CCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHHHHHHH
Q psy16044        361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       361 ~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      ...+++..     ...|.|+|||||+..  +|+  ++||.|+... .+.....+...-+.....++++.
T Consensus       172 ~~~~iq~d-----a~i~~GnSGGPLvn~--~G~--vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l  231 (345)
T 3stj_A          172 LENFIQTD-----ASINRGNSGGALLNL--NGE--LIGINTAILAPGGGSVGIGFAIPSNMARTLAQQL  231 (345)
T ss_dssp             SCCEEEEC-----SCCCTTCTTCEEECT--TSC--EEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHH
T ss_pred             ccCEEEEe-----cccCCCcCccceeCC--CCE--EEEEEeccccCCCCcceeEEEEehHHHHHHHHHH
Confidence            23445542     257899999999863  454  9999998643 22211233444444444444443

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=96.14  E-value=0.04  Score=45.51  Aligned_cols=23  Identities=17%  Similarity=0.021  Sum_probs=19.0

Q ss_pred             CeeeEEEEecCC-EEEecCCCcCC
Q psy16044         55 PHWCGAVLIHPS-WVVTAAHCIHN   77 (436)
Q Consensus        55 ~~~C~GtLIs~~-~VLTAAhC~~~   77 (436)
                      ...++|-.|+.+ +||||+|-+.+
T Consensus        14 ~G~GsgF~i~~~g~vVTA~HVv~~   37 (198)
T 1mbm_A           14 YGTGSVWTRNNEVVVLTASHVVGR   37 (198)
T ss_dssp             EEEEEEEEETTEEEEEEEHHHHCT
T ss_pred             CCccceEEECCCeEEEEeeeEEcc
Confidence            466999999976 69999998854

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=96.13  E-value=0.031  Score=54.30  Aligned_cols=124  Identities=18%  Similarity=0.127  Sum_probs=63.2

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEe--cCCCCCCCCccccceEEEEEeeCccccccccCCCc
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATG--WGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV  358 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~G--wg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~  358 (436)
                      ..|+||||++.     .. +.++.|....  .+..++.+++.|  ||.....  .........+.-+...    .+..  
T Consensus       124 ~~DlAlLkv~~-----~~-l~~~~l~~s~--~~~~G~~V~aiG~P~G~~~~~--~~~~vt~Givs~~~r~----~~~~--  187 (451)
T 3pv2_A          124 ETDLAVLKIDA-----KN-LKSLVIGDSD--KLEVGDFVVAIGNPFGLNSFG--NSQSATFGIVSALKRS----DLNI--  187 (451)
T ss_dssp             TTTEEEEECCC-----SS-CCCCCBCCGG--GCCTTCEEEEEECCCCC-------CCEEEEEEEEEEC------------
T ss_pred             CCcEEEEEEcC-----cC-CceeEecCcc--cCCCCCEEEEEECCCCccccc--cCCceeEEEEeecccc----ccCC--
Confidence            57999999964     12 5566665432  356899999999  6643211  1122222223222221    0110  


Q ss_pred             cCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        359 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       359 ~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      .....+++..     ...+.|+|||||+..  +|+  ++||.++... .+.....+...-+.....++++.+
T Consensus       188 ~~~~~~iqtd-----a~i~~GnSGGPl~n~--~G~--VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  250 (451)
T 3pv2_A          188 EGVENFIQTD-----AAINPGNSGGALVNA--KGE--LIGINTAILSPYGGNVGIGFAIPINMVKDVAQQII  250 (451)
T ss_dssp             ----CCEEES-----SCCCGGGTTSEEEET--TCC--EEEEEECCC------CCCEEEEEHHHHHHHHHHHH
T ss_pred             CCcceEEEEe-----cccCCCCCcCcccCC--CCe--EEEEEeEeecCCCCccceeeeehhHHHHHHHHHHH
Confidence            1123455542     256789999999853  454  9999998653 212122344455555555555444

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=96.02  E-value=0.035  Score=53.77  Aligned_cols=98  Identities=18%  Similarity=0.166  Sum_probs=56.8

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCccC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL  360 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  360 (436)
                      ..|+||||++.+..     +.++.|....  .+..++.+++.||.....     ......   +++...+.. +..  .-
T Consensus       110 ~~DlAllkv~~~~~-----l~~~~l~~s~--~~~~G~~v~aiG~P~g~~-----~~vt~G---~vs~~~r~~-~~~--~~  171 (436)
T 4a8c_A          110 QSDIALLQIQNPSK-----LTQIAIADSD--KLRVGDFAVAVGNPFGLG-----QTATSG---IVSALGRSG-LNL--EG  171 (436)
T ss_pred             CCCEEEEEecCCCC-----CceEeccCcc--cCCCCCEEEEEEcCCCCC-----ccEEEE---EEeeecccc-cCC--CC
Confidence            47999999976432     6677776433  356899999999964221     111122   222222211 110  01


Q ss_pred             CCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC
Q psy16044        361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  405 (436)
Q Consensus       361 ~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~  405 (436)
                      ....+...     ...|.|+|||||+..  +|+  ++||.++...
T Consensus       172 ~~~~iq~d-----a~i~~GnSGGPl~n~--~G~--vvGI~~~~~~  207 (436)
T 4a8c_A          172 LENFIQTD-----ASINRGNAGGALLNL--NGE--LIGINTAILA  207 (436)
T ss_pred             ccCEEEEc-----CccCCCCCcCcccCC--CCE--EEEEEeeecc
Confidence            12344432     256889999999864  343  9999988653

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=96.01  E-value=0.0054  Score=52.52  Aligned_cols=40  Identities=33%  Similarity=0.518  Sum_probs=25.6

Q ss_pred             cCCCCceeeeEecCCcEEEEEEEEecC-----C-CC--CCCCCeEEEeCccc
Q psy16044        378 IGDSGGPLQCSLKDGRWYLAGITSFGS-----G-CA--KSGYPDVYTKLSFY  421 (436)
Q Consensus       378 ~gdsGgpl~~~~~~~~~~l~Gi~S~~~-----~-c~--~~~~p~v~t~V~~~  421 (436)
                      .|||||||+..  ++  .++||.|++.     + |.  .......|+.|...
T Consensus       140 ~GDSGGPl~~~--~g--~~vGI~s~~~~~~~~~~c~~~~~~g~~f~~Pi~~v  187 (198)
T 2h5c_A          140 RGDSGGSWITS--AG--QAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPI  187 (198)
T ss_dssp             TTCTTCEEECT--TC--BEEEEEEEECCCTTSBSTTSCGGGCCEEEEEHHHH
T ss_pred             CCcceeEEEee--CC--EEEEEEEeecCccCCCccccccCCceEEEEEHHHH
Confidence            59999999931  33  3999999984     3 41  11124667766543

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A

Probab=95.35  E-value=0.16  Score=42.62  Aligned_cols=37  Identities=22%  Similarity=0.045  Sum_probs=23.6

Q ss_pred             CCCcceEEEeeeccCCCCCCeeeEEEEecC-CEEEecCCCcCCC
Q psy16044         36 GAWPWQVSLQVLHPRLGLMPHWCGAVLIHP-SWVVTAAHCIHND   78 (436)
Q Consensus        36 ~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~-~~VLTAAhC~~~~   78 (436)
                      +.-|-.|.+.-..      ....+|.-|+. ..||||+|-+.+.
T Consensus        16 ~~~~N~v~V~G~~------~GsGt~F~i~g~~~VvTA~HVVg~~   53 (213)
T 3fan_A           16 KPSLNTVNVVGSS------MGSGGVFTIDGKIKCVTAAHVLTGN   53 (213)
T ss_dssp             SCCTTEEEEESSS------EEEEEEEEETTEEEEEEEGGGSBTT
T ss_pred             CCCCCeEEEeecC------CCceEEEEECCcEEEEEeccEeCCC
Confidence            3445566664322      34566777773 4899999988663

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=94.74  E-value=0.15  Score=52.62  Aligned_cols=31  Identities=29%  Similarity=0.584  Sum_probs=23.2

Q ss_pred             CCccCCCCCeeeeE-ecCCcEEEEEEEeEcCC
Q psy16044        216 GACIGDSGGPLQCS-LKDGRWYLAGITSFGSG  246 (436)
Q Consensus       216 ~~C~gDsGgPl~~~-~~~~~~~l~GI~S~g~~  246 (436)
                      ..-.||||+||+.- ...++|+|+|+.+.+.+
T Consensus       212 yg~~GDSGSPLFayD~~~~KWvl~Gv~~~~~~  243 (1011)
T 3syj_A          212 AGSKGDSGSPMFIYDAEKQKWLINGILREGNP  243 (1011)
T ss_dssp             BCCTTCTTCEEEEEETTTTEEEEEEEECC---
T ss_pred             CCCCCCCCCcceeeEcCCCeEEEEEEeecccc
Confidence            35689999999874 45779999999987654

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=92.81  E-value=0.19  Score=52.74  Aligned_cols=56  Identities=27%  Similarity=0.506  Sum_probs=38.8

Q ss_pred             CCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHhhhhh
Q psy16044        375 GACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIAVD  434 (436)
Q Consensus       375 ~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~~~~~  434 (436)
                      ..-.||||+||+.-+ +.++|+|+|+.|.+..-+..+  --|.-+..  +|+++++++..+
T Consensus       201 ~~~~GDSGSPlF~yD~~~kKWvLvGv~s~g~~~g~~~--~~~~~~~~--~f~~~~~~~d~~  257 (1048)
T 1wxr_A          201 YGEAGDSGSPLFAFDTVQNKWVLVGVLTAGNGAGGRG--NNWAVIPL--DFIGQKFNEDND  257 (1048)
T ss_dssp             BCCTTCTTCEEEEEETTTTEEEEEEEEEEESSTTCSC--EEEEECCH--HHHHHHHHTTBC
T ss_pred             CCCCCCCCCeeeEEEcCCCeEEEEEEecccccCCccc--ceEEEeCH--HHhhhhhhcccc
Confidence            455699999998876 578999999998554312211  45555553  898888765543

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=91.80  E-value=1.4  Score=42.53  Aligned_cols=98  Identities=20%  Similarity=0.196  Sum_probs=55.3

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCcc
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE  359 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  359 (436)
                      ...|+|||+++.+.    . +.++.|....  .+..++.+++.||..-..     .....-.+.-+...    ....  .
T Consensus       132 ~~~DlAvlkv~~~~----~-~~~~~l~~s~--~~~~G~~V~aiG~P~g~~-----~tvt~Givs~~~r~----~~~~--~  193 (448)
T 1ky9_A          132 PRSDIALIQIQNPK----N-LTAIKMADSD--ALRVGDYTVAIGNPFGLG-----ETVTSGIVSALGRS----GLNA--E  193 (448)
T ss_dssp             TTTTEEEEEESSCC----S-CCCCCBCCGG--GCCTTCEEEEEECTTSSS-----CEEEEEEEEEESSC----C------
T ss_pred             CCCCEEEEEecCCC----C-CceEEecccc--cCCCCCEEEEEECCCCCC-----CeEEeEEEeecccc----ccCC--C
Confidence            35899999998642    1 4555554332  356899999999754211     11222222222211    0000  0


Q ss_pred             CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC
Q psy16044        360 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS  404 (436)
Q Consensus       360 ~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~  404 (436)
                      -...++++.     ...+.|+|||||+..  +|+  ++||.++..
T Consensus       194 ~~~~~iqtd-----a~i~~GnSGGpl~n~--~G~--vvGI~~~~~  229 (448)
T 1ky9_A          194 NYENFIQTD-----AAINRGNAGGALVNL--NGE--LIGINTAIL  229 (448)
T ss_dssp             -CCCCEEES-----CCCTTSCCCSEEECT--TSC--EEEEEECSS
T ss_pred             CccCEEEEc-----CCCCCCCCCCeeECC--CCE--EEEEEEEee
Confidence            123445542     256789999999863  454  999999764

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=87.85  E-value=0.72  Score=47.75  Aligned_cols=55  Identities=16%  Similarity=0.341  Sum_probs=35.2

Q ss_pred             CCccCCCCceeeeEe-cCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHhhhh
Q psy16044        375 GACIGDSGGPLQCSL-KDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINIAV  433 (436)
Q Consensus       375 ~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~~~~  433 (436)
                      ..-.||||+||+.-+ +.++|+|+|+.+.+.+....  ---|+-+.  .+|+.+++.+..
T Consensus       212 yg~~GDSGSPLFayD~~~~KWvl~Gv~~~~~~~~g~--~n~~~i~~--~~f~~~~~~~D~  267 (1011)
T 3syj_A          212 AGSKGDSGSPMFIYDAEKQKWLINGILREGNPFEGK--ENGFQLVR--KSYFDEIFERDL  267 (1011)
T ss_dssp             BCCTTCTTCEEEEEETTTTEEEEEEEECC----------EEEEECC--HHHHHHHHHHHC
T ss_pred             CCCCCCCCCcceeeEcCCCeEEEEEEeeccccccCc--ccceEEec--hHHhhhhhhccc
Confidence            345699999998876 67899999999875433221  12355443  589988887554

>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A*

Probab=87.71  E-value=2.9  Score=32.94  Aligned_cols=42  Identities=24%  Similarity=0.449  Sum_probs=26.4

Q ss_pred             CeEEeccCCC--CCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        204 GHLCGGQLDG--FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       204 ~~~Ca~~~~~--~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      .|+-++....  .-++-.||-|.|.++. .++.|+++||-.-+..
T Consensus       132 GmlltganaK~mdLGT~PGDCGcPYvyk-rgndwvv~GVH~Aatr  175 (194)
T 2fyq_A          132 GMLLTGANAKGMDLGTIPGDCGAPYVHK-RGNDWVVCGVHAAATK  175 (194)
T ss_dssp             EEECC-----------CGGGTTCEEEEE-ETTEEEEEEEEEEECS
T ss_pred             eeEEecCCcccCcCCCCCCCCCCceEEe-eCCceEEEEEEEeecc
Confidence            4555443332  2456799999999987 5899999999876643

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=86.21  E-value=4.3  Score=39.98  Aligned_cols=40  Identities=13%  Similarity=0.087  Sum_probs=25.3

Q ss_pred             ccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCC
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  326 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~  326 (436)
                      ..|+||||++.+-.+..  +.|+.+...    ...++.+.+.|+-.
T Consensus       120 ~~DLAvLkv~~~~~~~~--~~pl~~g~~----~~vGd~V~aiG~P~  159 (539)
T 4fln_A          120 DCDIALLSVESEDFWKG--AEPLRLGHL----PRLQDSVTVVGYPL  159 (539)
T ss_dssp             TTTEEEEEECCSSSSTT--CCCCCBCCC----CCTTCEEEEEECCS
T ss_pred             CCCEEEEEEeCCcCCcC--CceeecCCc----CcCCCeEEEEEcCC
Confidence            47999999986532211  344444322    34688899998753

>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0

Probab=85.61  E-value=6.7  Score=33.84  Aligned_cols=28  Identities=32%  Similarity=0.478  Sum_probs=21.5

Q ss_pred             CCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       216 ~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      ++=.|+-|.||+.. .+|.  ++||-|.+..
T Consensus       145 sT~~G~CGlPlVs~-~Dg~--IVGiHsl~~~  172 (241)
T 3mmg_A          145 TTKDGQAGSPLVSI-IDGN--ILGIHSLTHT  172 (241)
T ss_dssp             CCCTTCTTCEEEET-TTCC--EEEEEEEEET
T ss_pred             CCCCCcCCCeEEEc-CCCc--EEEEEecccC
Confidence            45578999999986 3554  9999998754

>4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine norovirus 1}

Probab=84.24  E-value=2.7  Score=33.01  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=28.5

Q ss_pred             CeEEeccCCC--CCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        204 GHLCGGQLDG--FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       204 ~~~Ca~~~~~--~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      .|+-++....  .-++-.||-|.|.++. .++.|+++||..-+..
T Consensus       121 GmlltganaK~mdLGT~PGDCGcPYvyk-rgn~~vv~GVHtAatr  164 (185)
T 4ash_A          121 GMLLTGSNAKAQDLGTIPGDAGCPYVYK-KGNTWVVIGVHVAATR  164 (185)
T ss_dssp             EEECC-------CCSCCTTCTTCEEEEE-ETTEEEEEEEEEEECS
T ss_pred             eeEEecCCcccCcCCCCCCCCCCceEEe-eCCceEEEEEEEeecc
Confidence            4444433322  2456799999999987 5899999999877643

>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}

Probab=83.74  E-value=0.66  Score=47.90  Aligned_cols=28  Identities=39%  Similarity=0.750  Sum_probs=23.4

Q ss_pred             CccCCCCCeeeeE-ecCCcEEEEEEEeEc
Q psy16044        217 ACIGDSGGPLQCS-LKDGRWYLAGITSFG  244 (436)
Q Consensus       217 ~C~gDsGgPl~~~-~~~~~~~l~GI~S~g  244 (436)
                      .-.||||+||+.- ...++|+|+||.++.
T Consensus       258 ~~~GDSGSPlF~yD~~~~kWvl~Gvl~~~  286 (989)
T 3h09_A          258 AVLGDSGSPLFVYDREKGKWLFLGSYDFW  286 (989)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEEEEE
T ss_pred             CCcCCCCCccceeecccceEEEEEEeecc
Confidence            4689999999875 457799999999874

>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}

Probab=80.29  E-value=0.98  Score=46.72  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=22.0

Q ss_pred             CccCCCCCeeeeE-ecCCcEEEEEEEeE
Q psy16044        217 ACIGDSGGPLQCS-LKDGRWYLAGITSF  243 (436)
Q Consensus       217 ~C~gDsGgPl~~~-~~~~~~~l~GI~S~  243 (436)
                      .-.||||+||+.- ...++|+|+||.+-
T Consensus       203 ~~~GDSGSPlFaYD~~~~KWvl~GVl~~  230 (968)
T 3sze_A          203 ASQGDAGSALFVYDNQKKKWVVAGTVWG  230 (968)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEEEE
T ss_pred             CCcCCCCCcceeEEcCCCeEEEEEEEec
Confidence            4689999999874 45779999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	436
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	5e-36
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	8e-25
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	1e-35
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	4e-24
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	3e-35
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	2e-24
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	7e-35
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	3e-23
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	5e-34
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	3e-24
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	1e-33
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	4e-22
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	3e-33
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	1e-23
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	5e-33
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	7e-24
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	2e-32
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	2e-24
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	2e-31
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	2e-21
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	6e-31
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	4e-20
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	1e-30
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	3e-21
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	2e-30
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	6e-23
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	3e-30
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	1e-21
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	4e-30
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	1e-20
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	7e-30
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	7e-22
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	7e-30
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	4e-16
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	7e-30
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	3e-20
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	2e-29
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	4e-18
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	2e-29
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	1e-21
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	6e-29
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	3e-20
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	4e-28
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	2e-16
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	8e-28
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	3e-18
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	1e-27
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	4e-18
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	4e-27
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	3e-19
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	5e-27
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	1e-17
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	8e-27
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	1e-20
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	9e-27
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	5e-18
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	1e-26
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	3e-17
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	1e-26
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	8e-18
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	1e-26
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	8e-18
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	2e-26
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	2e-19
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	3e-26
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	2e-17
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	3e-26
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	7e-17
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	6e-26
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	7e-19
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	8e-26
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	4e-15
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	3e-25
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	3e-16
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	9e-25
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	7e-16
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	1e-24
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	8e-17
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	2e-24
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	1e-13
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	4e-24
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	3e-14
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	2e-23
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	2e-16
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	3e-23
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	2e-19
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	4e-23
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	5e-13
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	1e-22
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	7e-17
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	1e-22
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	1e-15
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	1e-22
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	6e-15
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	2e-22
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	4e-14
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	4e-22
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	2e-14
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	6e-22
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	5e-12
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	6e-22
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	2e-13
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	8e-22
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	8e-14
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	1e-21
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	9e-12
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	1e-21
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	1e-13
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	8e-19
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	4e-13
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	2e-18
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	5e-12
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	2e-17
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	5e-09
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	2e-16
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	2e-12
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	1e-08
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	2e-05
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	1e-07
d1agja_	242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	2e-06
d1qtfa_	246	b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus	4e-04

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score =  130 bits (328), Expect = 5e-36
 Identities = 75/226 (33%), Positives = 112/226 (49%), Gaps = 12/226 (5%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G ++  G +P+Q+S Q     +G   H+CGA + + ++ +TA HC++ D      P  
Sbjct: 2   VGGTDATLGEFPYQLSFQ--ETFIGFSFHFCGASIYNENYAITAGHCVYGD--DYENPSG 57

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
              V G+ D +  E SE  I V +I +HE F  +   +DI+LLKLS   +  D  V  + 
Sbjct: 58  LQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDN-VAPIA 116

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L +            + TGWG     G+    L+++ VPL +   CR  YG + E+    
Sbjct: 117 LPEQGHTATG---DVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYG-ADEILDSM 172

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
           +C G  +G   +C GDSGGPL  S   G  YLAGI S+G G    G
Sbjct: 173 ICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPG 217

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score =  100 bits (248), Expect = 8e-25
 Identities = 54/156 (34%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
               +        +LLKLS   +  D  V  + L +            + TGWG     G
Sbjct: 85  HENFDYNLLDNDISLLKLSGSLTFNDN-VAPIALPEQGHTATG---DVIVTGWGTTSEGG 140

Query: 332 DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD 391
           +    L+++ VPL +   CR  YG + E+    +C G  +G   +C GDSGGPL  S   
Sbjct: 141 NTPDVLQKVTVPLVSDEDCRADYG-ADEILDSMICAGVPEGGKDSCQGDSGGPLAAS-DT 198

Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
           G  YLAGI S+G GCA+ GYP VYT++S+++ WI+ 
Sbjct: 199 GSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKA 234

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 3e-35
 Identities = 68/226 (30%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDI-FSLPIPE 86
           + G ++  G WPWQVSL  L        H CGA LI P+W+V+AAHC  +D  F    P 
Sbjct: 2   VGGTDADEGEWPWQVSLHALGQG-----HICGASLISPNWLVSAAHCYIDDRGFRYSDPT 56

Query: 87  LWTAVLGDWDRTEEEKSEV-RIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
            WTA LG  D+++     V    ++RI  H  F+++  D  +  L     A    +    
Sbjct: 57  QWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPI 116

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
                       +    TGWG  +  G     L++  + + N + C +     +      
Sbjct: 117 CLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQI--TPRM 174

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
           +C G L G   +C GDSGGPL     DGR + AG+ S+G G     
Sbjct: 175 MCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRN 220

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (245), Expect = 2e-24
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 313 VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDG 372
               +    TGWG  +  G     L++  + + N + C +     +      +C G L G
Sbjct: 125 FPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQI--TPRMMCVGFLSG 182

Query: 373 FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINI 431
              +C GDSGGPL     DGR + AG+ S+G GCA+   P VYT+L  +  WI++   +
Sbjct: 183 GVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTGV 241

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  127 bits (320), Expect = 7e-35
 Identities = 79/237 (33%), Positives = 116/237 (48%), Gaps = 14/237 (5%)

Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CG  I   +   R++ G+++I  +WPWQ+SLQ L        H CG  LI P+ V+TAAH
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWR--HTCGGTLITPNHVLTAAH 58

Query: 74  CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLS 131
           CI N +          A+  +    E+E   + + V+ I VHE++      +DIAL+KL+
Sbjct: 59  CISNTL------TYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLA 112

Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC 191
                    ++  CL             C  TGWGR+   G + ++L+Q   P+ + + C
Sbjct: 113 ETVE-LGDTIQVACLPSEGSLL-PQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATC 170

Query: 192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
             +      +    +C G  DG   AC GDSGGPL C   DG+W + GI SFGSG  
Sbjct: 171 SQRDWWGTTVKETMVCAGG-DGVISACNGDSGGPLNCQ-ADGQWDVRGIVSFGSGLS 225

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.0 bits (237), Expect = 3e-23
 Identities = 60/233 (25%), Positives = 90/233 (38%), Gaps = 24/233 (10%)

Query: 203 GGHLCGGQL--DGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPR 260
             H CGG L                L   +  G+  L      GS Y GV   + H +  
Sbjct: 39  WRHTCGGTLITPNHVLTAAHCISNTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWN 98

Query: 261 LINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCV 320
               +  I      + +                      ++  CL             C 
Sbjct: 99  SFLVRNDIALIKLAETVELGD-----------------TIQVACLPSEGSLL-PQDYPCF 140

Query: 321 ATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGD 380
            TGWGR+   G + ++L+Q   P+ + + C  +      +    +C G  DG   AC GD
Sbjct: 141 VTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGG-DGVISACNGD 199

Query: 381 SGGPLQCSLKDGRWYLAGITSFGSG--CAKSGYPDVYTKLSFYLPWIRKQINI 431
           SGGPL C   DG+W + GI SFGSG  C     P V+T++S Y+ WI +++ +
Sbjct: 200 SGGPLNCQ-ADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQL 251

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 5e-34
 Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 21/232 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+++  G +PWQV L       G +  +CG  +++  W+VTAAHC+            
Sbjct: 2   VGGEDAKPGQFPWQVVLN------GKVDAFCGGSIVNEKWIVTAAHCVET-------GVK 48

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRA 143
            T V G+ +  E E +E +  V RI  H  ++     Y+HDIALL+L  P          
Sbjct: 49  ITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPI 108

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
                              +GWGRV  KG     L+ +RVPL + + C      ++  + 
Sbjct: 109 CIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTI--YN 166

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
              C G  +G   +C GDSGGP    + +G  +L GI S+G   C +  +Y 
Sbjct: 167 NMFCAGFHEGGRDSCQGDSGGPHVTEV-EGTSFLTGIISWGEE-CAMKGKYG 216

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (243), Expect = 3e-24
 Identities = 52/240 (21%), Positives = 82/240 (34%), Gaps = 28/240 (11%)

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL------AGITSFGSGYCGVG 251
            +       CGG                   S+ + +W +                    
Sbjct: 17  VLNGKVDAFCGG-------------------SIVNEKWIVTAAHCVETGVKITVVAGEHN 57

Query: 252 IRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKR 311
           I  +    +  N    I        +       ALL+L  P                   
Sbjct: 58  IEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTN 117

Query: 312 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
                     +GWGRV  KG     L+ +RVPL + + C      ++  +    C G  +
Sbjct: 118 IFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTI--YNNMFCAGFHE 175

Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQINI 431
           G   +C GDSGGP    + +G  +L GI S+G  CA  G   +YTK+S Y+ WI+++  +
Sbjct: 176 GGRDSCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL 234

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 3e-33
 Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 13/226 (5%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G  S+RG WPWQV+L    P      H CG  +I   W++TAAHC +        P++
Sbjct: 2   VGGTASVRGEWPWQVTLHTTSPTQR---HLCGGSIIGNQWILTAAHCFYGVES----PKI 54

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHD--IALLKLSRPTSARDKGVRAVC 145
                G  +++E ++      V+ I +H+++        IALLKL    +  D       
Sbjct: 55  LRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICL 114

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
            +  D+        C  TGWG  K +  + + L++ ++PL     C+ +Y      H   
Sbjct: 115 PSKGDRNV--IYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITH-KM 171

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
           +C G  +G   AC GDSGGPL C   +  W+L GITS+G G     
Sbjct: 172 ICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRE 216

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (240), Expect = 1e-23
 Identities = 62/232 (26%), Positives = 92/232 (39%), Gaps = 26/232 (11%)

Query: 203 GGHLCGGQLDG-----FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHR 257
             HLCGG + G      +  C      P    +  G    + I    S +    I    +
Sbjct: 25  QRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQ 84

Query: 258 QPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQ 317
                +G +                  ALLKL    +  D        +  D+       
Sbjct: 85  YKMAESGYD-----------------IALLKLETTVNYTDSQRPICLPSKGDRNV--IYT 125

Query: 318 QCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGAC 377
            C  TGWG  K +  + + L++ ++PL     C+ +Y      H   +C G  +G   AC
Sbjct: 126 DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHK-MICAGYREGGKDAC 184

Query: 378 IGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            GDSGGPL C   +  W+L GITS+G GCA+   P VYT +  Y+ WI ++ 
Sbjct: 185 KGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 5e-33
 Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 25/239 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+++  G WPWQVSL+          H CG  L+   WV+TAAHC       L    +
Sbjct: 2   VGGRDTSLGRWPWQVSLRYDGA------HLCGGSLLSGDWVLTAAHCFPERNRVLSRWRV 55

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--------HDIALLKLSRPTSARDK 139
           +          +     +++ V+ +  H  +  +         +DIAL+ LS P     +
Sbjct: 56  F-----AGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLP-LTE 109

Query: 140 GVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV 199
            ++ VCL  A +  V   + C  TGWG  +  G     L++ RVP+ +  VC        
Sbjct: 110 YIQPVCLPAAGQALV-DGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGN 168

Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSL---KDGRWYLAGITSFGSGYCGVGIRYS 255
           ++     C G  +G   AC GDSGGP  C     +  RW L GI S+G+G C +  +  
Sbjct: 169 QIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTG-CALAQKPG 226

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (242), Expect = 7e-24
 Identities = 61/246 (24%), Positives = 91/246 (36%), Gaps = 32/246 (13%)

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL----------AGITSFGSGY 247
           S+   G HLCGG                   SL  G W L            ++ +    
Sbjct: 17  SLRYDGAHLCGG-------------------SLLSGDWVLTAAHCFPERNRVLSRWRVFA 57

Query: 248 CGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTD 307
             V     H     +       G  P+++  +   S  +  +   +              
Sbjct: 58  GAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLP 117

Query: 308 ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCG 367
           A  + +   + C  TGWG  +  G     L++ RVP+ +  VC        ++     C 
Sbjct: 118 AAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCA 177

Query: 368 GQLDGFSGACIGDSGGPLQCSL---KDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW 424
           G  +G   AC GDSGGP  C     +  RW L GI S+G+GCA +  P VYTK+S +  W
Sbjct: 178 GYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREW 237

Query: 425 IRKQIN 430
           I + I 
Sbjct: 238 IFQAIK 243

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  120 bits (301), Expect = 2e-32
 Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G +S  GAWPW V+L             CGA L+   W+V+AAHC++         + 
Sbjct: 2   VGGSDSREGAWPWVVALYFDDQ------QVCGASLVSRDWLVSAAHCVYGRNMEPSKWKA 55

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
              +    + T  +     I    I  H      ++DIA++ L    +     ++ +CL 
Sbjct: 56  VLGLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVN-YTDYIQPICLP 114

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
           + ++    P + C   GWG +  +G     L++  VPL +   C+ +  +        +C
Sbjct: 115 EENQV-FPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNI-TENMVC 172

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
            G   G   +C GDSGGPL C  ++ RW LAG+TSFG       
Sbjct: 173 AGYEAGGVDSCQGDSGGPLMCQ-ENNRWLLAGVTSFGYQCALPN 215

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.0 bits (245), Expect = 2e-24
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P  N        A++ L    +     ++ +CL + ++    P + C   GWG +  +G
Sbjct: 81  NPHYNKRRKNNDIAMMHLEMKVN-YTDYIQPICLPEENQV-FPPGRICSIAGWGALIYQG 138

Query: 332 DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD 391
                L++  VPL +   C+ +  +        +C G   G   +C GDSGGPL C  ++
Sbjct: 139 STADVLQEADVPLLSNEKCQQQMPEYNI-TENMVCAGYEAGGVDSCQGDSGGPLMCQ-EN 196

Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
            RW LAG+TSFG  CA    P VY ++  +  WI+  ++
Sbjct: 197 NRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH 235

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (294), Expect = 2e-31
 Identities = 62/229 (27%), Positives = 91/229 (39%), Gaps = 23/229 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+E I  + PWQ +L             CG VL+   WV+TAAHC            L
Sbjct: 2   LEGRECIPHSQPWQAALFQGER------LICGGVLVGDRWVLTAAHCKKQKYS----VRL 51

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               L   D+ E+E    +        +    ++ HDI L++L    +  DK        
Sbjct: 52  GDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQL-- 109

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHL 206
                     Q+C+ +GWG V    +     L    V +++ + C   Y   +    G +
Sbjct: 110 --ANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKI--TEGMV 165

Query: 207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
           C G  +G +  C GDSGGPL C        L GITS+GS  CG   +  
Sbjct: 166 CAGSSNG-ADTCQGDSGGPLVC-----DGMLQGITSWGSDPCGKPEKPG 208

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.5 bits (223), Expect = 2e-21
 Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 14/161 (8%)

Query: 272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
           +   N         L++L    +  DK                  Q+C+ +GWG V    
Sbjct: 77  YNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQL----ANLCPKVGQKCIISGWGTVTSPQ 132

Query: 332 DLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
           +     L    V +++ + C   Y   +    G +C G  +G +  C GDSGGPL C   
Sbjct: 133 ENFPNTLNCAEVKIYSQNKCERAYPGKI--TEGMVCAGSSNG-ADTCQGDSGGPLVC--- 186

Query: 391 DGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
                L GITS+GS  C K   P VYTK+  Y  WI+K ++
Sbjct: 187 --DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD 225

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 1e-30
 Identities = 71/233 (30%), Positives = 99/233 (42%), Gaps = 21/233 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+E+ R  WPWQVSL+V  P      H+CG  LIHP WV+TAAHC+  D+        
Sbjct: 2   VGGQEAPRSKWPWQVSLRVHGPYWM---HFCGGSLIHPQWVLTAAHCVGPDVKD------ 52

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAVC 145
             A+            +  +PV RI VH +F+      DIALL+L  P            
Sbjct: 53  LAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTL 112

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYG-------DS 198
              ++  P          G      +      L+Q++VP+    +C  KY        D 
Sbjct: 113 PPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDV 172

Query: 199 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
             +    LC G  +    +C GDSGGPL C   +G W  AG+ S+G G     
Sbjct: 173 RIVRDDMLCAG--NTRRDSCQGDSGGPLVCK-VNGTWLQAGVVSWGEGCAQPN 222

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (222), Expect = 3e-21
 Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 10/166 (6%)

Query: 272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P           ALL+L  P               ++  P          G      + 
Sbjct: 80  HPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERL 139

Query: 332 DLVSKLRQIRVPLHNISVCRDKYG-------DSVELHGGHLCGGQLDGFSGACIGDSGGP 384
                L+Q++VP+    +C  KY        D   +    LC G  +    +C GDSGGP
Sbjct: 140 PPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGP 197

Query: 385 LQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           L C   +G W  AG+ S+G GCA+   P +YT++++YL WI   + 
Sbjct: 198 LVCK-VNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVP 242

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score =  115 bits (287), Expect = 2e-30
 Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 25/224 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E    + P QVSL   +       H+CG  L++ +WVV+AAHC  + +        
Sbjct: 2   VGGYECKAYSQPHQVSLNSGY-------HFCGGSLVNENWVVSAAHCYKSRVE------- 47

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
                 +   TE  +  +         +   +N  +DI L+KLS+P +     V+ V L 
Sbjct: 48  VRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTY-VQPVALP 106

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
            +          C  +GWG         +KL+ + +P+ + S C + Y   +       C
Sbjct: 107 TSC---APAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMI--TNAMFC 161

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
            G L+G   +C GDSGGP+ C        L G+ S+G G    G
Sbjct: 162 AGYLEGGKDSCQGDSGGPVVC-----NGELQGVVSWGYGCAEPG 200

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 94.7 bits (234), Expect = 6e-23
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 11/159 (6%)

Query: 272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P  +         L+KLS+P +     V+ V L  +          C  +GWG      
Sbjct: 73  HPNYSSYNIDNDIMLIKLSKPATLNTY-VQPVALPTSC---APAGTMCTVSGWGNTMSST 128

Query: 332 DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD 391
              +KL+ + +P+ + S C + Y   +       C G L+G   +C GDSGGP+ C    
Sbjct: 129 ADSNKLQCLNIPILSYSDCNNSYPGMI--TNAMFCAGYLEGGKDSCQGDSGGPVVC---- 182

Query: 392 GRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
               L G+ S+G GCA+ G P VY K+  +  W+   + 
Sbjct: 183 -NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 4e-30
 Identities = 72/240 (30%), Positives = 101/240 (42%), Gaps = 18/240 (7%)

Query: 13  DCGV-GIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
           DCG   +        ++ G  +   +WPWQVSL+          H+CG  LI P WV+TA
Sbjct: 3   DCGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFGM-----HFCGGTLISPEWVLTA 57

Query: 72  AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLS 131
           AHC+       P P  +  +LG       E     I V              DIALLKLS
Sbjct: 58  AHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVS----RLFLEPTRKDIALLKLS 109

Query: 132 RPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC 191
            P    DK +       +    V  + +C  TGWG  +        L + ++P+    VC
Sbjct: 110 SPAVITDKVI--PACLPSPNYVVADRTECFITGWGETQGTFG-AGLLMEAQLPVIENKVC 166

Query: 192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
                 +  +    LC G L G + +C GDSGGPL C  +  ++ L G+TS+G G     
Sbjct: 167 NRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWGLGCARPN 225

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 1e-20
 Identities = 57/229 (24%), Positives = 88/229 (38%), Gaps = 24/229 (10%)

Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLI 262
           G H CGG                   +L    W L               +      + +
Sbjct: 40  GMHFCGG-------------------TLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEV 80

Query: 263 NGKESI-RGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVA 321
           N +  +         L  +    ALLKLS P    DK +       +    V  + +C  
Sbjct: 81  NLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVI--PACLPSPNYVVADRTECFI 138

Query: 322 TGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDS 381
           TGWG  +        L + ++P+    VC      +  +    LC G L G + +C GDS
Sbjct: 139 TGWGETQGTFG-AGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDS 197

Query: 382 GGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           GGPL C  +  ++ L G+TS+G GCA+   P VY ++S ++ WI   + 
Sbjct: 198 GGPLVCF-EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 245

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 7e-30
 Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 37/249 (14%)

Query: 29  NGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELW 88
           + K +     PWQ  + V+ P  G     C   ++   +V+TAAHC   D          
Sbjct: 7   HRKGTDYHKQPWQAKISVIRPSKG--HESCMGAVVSEYFVLTAAHCFTVD----DKEHSI 60

Query: 89  TAVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRAVC 145
              +G   R  E +  +  P   I   +E      Y +D+AL+KL          +R +C
Sbjct: 61  KVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQT-IRPIC 119

Query: 146 LTDADKRPVNPK-----------QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK 194
           L   +      +           ++ +     +     +   KL +  V + N       
Sbjct: 120 LPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSC 179

Query: 195 YGD-------------SVELHGGHLCGGQLDGFSG--ACIGDSGGPLQCSLKDGRWYLAG 239
             D             S  +    LC G +  ++    C GDSGGPL    K  R+   G
Sbjct: 180 ERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVG 238

Query: 240 ITSFGSGYC 248
           + S+G    
Sbjct: 239 VISWGVVDV 247

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (186), Expect = 4e-16
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 38/182 (20%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQ-----------QCVATGWGRVKPKGDL 333
           AL+KL          +R +CL   +      +            + +     +     + 
Sbjct: 101 ALIKLKNKLKYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEE 159

Query: 334 VSKLRQIRVPLHNISVCRDKYGD-------------SVELHGGHLCGGQLDGFSG--ACI 378
             KL +  V + N         D             S  +    LC G +  ++    C 
Sbjct: 160 EKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 219

Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGSGCA----------KSGYPDVYTKLSFYLPWIRKQ 428
           GDSGGPL    K  R+   G+ S+G               +   D +  L   LPW++++
Sbjct: 220 GDSGGPLIVH-KRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 278

Query: 429 IN 430
           + 
Sbjct: 279 LQ 280

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score =  114 bits (284), Expect = 7e-30
 Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 24/233 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G +  + + PWQV++           + CG VLI PSWV+TAAHC  N+   L     
Sbjct: 2   VGGYKCEKNSQPWQVAVI--------NEYLCGGVLIDPSWVITAAHCYSNNYQVLLGRNN 53

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVRA 143
                    R    +S        + V  +     H++ +D+ LL LS P          
Sbjct: 54  LFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGG---- 109

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
           V + D   +       C+A+GWG   P +  +   L+ + + L +   C + Y D+V   
Sbjct: 110 VKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNV--T 167

Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
              LC G+++G    C GDSGGPL C        L GITS G+  C      +
Sbjct: 168 DVMLCAGEMEGGKDTCAGDSGGPLIC-----DGVLQGITSGGATPCAKPKTPA 215

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 87.0 bits (214), Expect = 3e-20
 Identities = 61/239 (25%), Positives = 90/239 (37%), Gaps = 29/239 (12%)

Query: 199 VELHGGHLCGGQLDG-----FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR 253
           V +   +LCGG L        +  C  ++              L G  +          R
Sbjct: 16  VAVINEYLCGGVLIDPSWVITAAHCYSNN-----------YQVLLGRNNLFKDEPFAQRR 64

Query: 254 YSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPV 313
              +  R  +    I      Q +        LL LS P          V + D   +  
Sbjct: 65  LVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGG----VKVIDLPTKEP 120

Query: 314 NPKQQCVATGWGRVKP-KGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDG 372
                C+A+GWG   P +  +   L+ + + L +   C + Y D+V      LC G+++G
Sbjct: 121 KVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNV--TDVMLCAGEMEG 178

Query: 373 FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
               C GDSGGPL C        L GITS G+  CAK   P +Y KL  +  WI+K + 
Sbjct: 179 GKDTCAGDSGGPLIC-----DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  112 bits (281), Expect = 2e-29
 Identities = 78/219 (35%), Positives = 101/219 (46%), Gaps = 20/219 (9%)

Query: 38  WPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDR 97
           W WQVSLQ  + + G   H CG  LI P WVVTA HCI            +  VLG++DR
Sbjct: 2   WSWQVSLQ--YEKDGAFHHTCGGSLIAPDWVVTAGHCIST-------SRTYQVVLGEYDR 52

Query: 98  TEEEKSEVRI--PVERIRVHEEFHNYH----HDIALLKLSRPTSARDKGVRAVCLTDADK 151
           +  E SE  I      + VH  +++      +DIAL+KLSR     DK   A      D 
Sbjct: 53  SVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDI 112

Query: 152 RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQL 211
            P      C  +GWGR+   G L  KL+Q  +P  +   C       + +    +C G  
Sbjct: 113 LPNE--APCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGD 170

Query: 212 DGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
                 C GDSGGPL C   DG W + G+TSF S + C 
Sbjct: 171 TRS--GCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCN 207

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 4e-18
 Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 303 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 362
             L  A       +  C  +GWGR+   G L  KL+Q  +P  +   C       + +  
Sbjct: 104 ANLPPAGDIL-PNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKK 162

Query: 363 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSF 420
             +C G        C GDSGGPL C   DG W + G+TSF S  GC     P V+T++S 
Sbjct: 163 TMVCAGGDTRS--GCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSA 220

Query: 421 YLPWIRKQIN 430
           ++ WI + I 
Sbjct: 221 FIDWIDETIA 230

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (277), Expect = 6e-29
 Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 40/236 (16%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G    + + PWQV++           H CG VL+  +WV+TAAHC  +          
Sbjct: 2   VGGFNCEKNSQPWQVAVYYQKE------HICGGVLLDRNWVLTAAHCYVDQ--------- 46

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-------------NYHHDIALLKLSRPT 134
           +   LG     +EE S     V +   H  F+             ++  D+ LL+LS+P 
Sbjct: 47  YEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPA 106

Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRD 193
                 V+ + L   +     P  +C+A+GWG + P        L+ + + L     C  
Sbjct: 107 D-ITDVVKPIALPTKE---PKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAK 162

Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            Y   V      LC G++ G    C  DSGGPL C        L G TS+G   CG
Sbjct: 163 VYLQKV--TDVMLCAGEMGGGKDTCRDDSGGPLIC-----DGILQGTTSYGPVPCG 211

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.0 bits (214), Expect = 3e-20
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 311 RPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
           +   P  +C+A+GWG + P        L+ + + L     C   Y   V      LC G+
Sbjct: 120 KEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKV--TDVMLCAGE 177

Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQ 428
           + G    C  DSGGPL C        L G TS+G   C K G P +YT L  +  WI+  
Sbjct: 178 MGGGKDTCRDDSGGPLIC-----DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDT 232

Query: 429 IN 430
           + 
Sbjct: 233 MM 234

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  109 bits (271), Expect = 4e-28
 Identities = 55/227 (24%), Positives = 87/227 (38%), Gaps = 22/227 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E  + + PWQV++             CG VL+HP WV+TAAHC+ +D         
Sbjct: 2   IGGWECEKHSKPWQVAVYHQGH------FQCGGVLVHPQWVLTAAHCMSDDYQIWLGRHN 55

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRA 143
            +         +   S +    +   + +++     +  HD+ LL+L++P    D     
Sbjct: 56  LSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKIL 115

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
              T    +       C  +GWG +          L+ + + L +   C   Y + +   
Sbjct: 116 DLPT----QEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKM--T 169

Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
              LC    D     C+GDSGG L C          GITS+G   C 
Sbjct: 170 EFVLCATHRDDSGSICLGDSGGALIC-----DGVFQGITSWGYSECA 211

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 76.3 bits (186), Expect = 2e-16
 Identities = 51/240 (21%), Positives = 84/240 (35%), Gaps = 29/240 (12%)

Query: 198 SVELHGGHLCGGQL--DGF---SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGI 252
           +V   G   CGG L    +   +  C+ D        +  GR  L+        +     
Sbjct: 17  AVYHQGHFQCGGVLVHPQWVLTAAHCMSDD-----YQIWLGRHNLSKDEDTAQFHQVSDS 71

Query: 253 RYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
               +    +  K+ +R      + +       LL+L++P    D        T    + 
Sbjct: 72  FLDPQFDLSLLKKKYLRPYDDISHDLM------LLRLAQPARITDAVKILDLPT----QE 121

Query: 313 VNPKQQCVATGWGRVKPKGD-LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
                 C  +GWG +    +     L+ + + L +   C   Y + +      LC    D
Sbjct: 122 PKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKM--TEFVLCATHRD 179

Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
                C+GDSGG L C          GITS+G   CA      V+TK+  +  WI++ I 
Sbjct: 180 DSGSICLGDSGGALIC-----DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  108 bits (269), Expect = 8e-28
 Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 9/229 (3%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+++   +WPWQVSLQ  +   G   H CG  L+  SWV+TAAHCI +          
Sbjct: 2   VGGEDARPNSWPWQVSLQ--YDSSGQWRHTCGGTLVDQSWVLTAAHCISS-----SRTYR 54

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
                      E     V++    +      +   +   +  L   +         +   
Sbjct: 55  VVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCL 114

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
            A    +     C  TGWGR++  G     L+Q ++ + + + C         +    +C
Sbjct: 115 PAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMIC 174

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CGVGIRYS 255
            G  DG   +C GDSGGPL C   +G+W + GI SFGS   C    + S
Sbjct: 175 AGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPS 222

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 81.8 bits (200), Expect = 3e-18
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 4/132 (3%)

Query: 301 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 360
           +  CL  A     N     V TGWGR++  G     L+Q ++ + + + C         +
Sbjct: 110 QLGCLPAAGTILPNNYVCYV-TGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTV 168

Query: 361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKL 418
               +C G  DG   +C GDSGGPL C   +G+W + GI SFGS  GC     P V+T++
Sbjct: 169 KTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRV 227

Query: 419 SFYLPWIRKQIN 430
           S Y+ WI   I 
Sbjct: 228 SNYIDWINSVIA 239

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score =  107 bits (267), Expect = 1e-27
 Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 21/228 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G  +  G +P+ VS+            WCG  L++ + V+TAAHC+     S      
Sbjct: 2   VGGTSASAGDFPFIVSISRNGG------PWCGGSLLNANTVLTAAHCVSGYAQSGFQIRA 55

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
            +        T          +  +RVH  +   ++D+A+LKLS    +         L 
Sbjct: 56  GSLSRTSGGIT--------SSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGY-ARLA 106

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
            +   PV      VA      +        L ++ VP+ + + CR +YG S   +     
Sbjct: 107 ASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCA 166

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
           G    G   +C GDSGGP+          L G  S+G+G C       
Sbjct: 167 GVS-SGGKDSCQGDSGGPIVD----SSNTLIGAVSWGNG-CARPNYSG 208

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 80.9 bits (198), Expect = 4e-18
 Identities = 53/230 (23%), Positives = 77/230 (33%), Gaps = 26/230 (11%)

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL-AGITSFGSGYCGVGIRYSH 256
           S+  +GG  CGG                   SL +    L A     G    G  IR   
Sbjct: 17  SISRNGGPWCGG-------------------SLLNANTVLTAAHCVSGYAQSGFQIRAGS 57

Query: 257 RQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPK 316
                     S+       +   +    A+LKLS    +         L  +   PV   
Sbjct: 58  LSRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGY-ARLAASGSDPVAGS 116

Query: 317 QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGA 376
              VA      +        L ++ VP+ + + CR +YG S   +     G    G   +
Sbjct: 117 SATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVS-SGGKDS 175

Query: 377 CIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
           C GDSGGP+          L G  S+G+GCA+  Y  VY  +     +I 
Sbjct: 176 CQGDSGGPIVD----SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFID 221

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (264), Expect = 4e-27
 Identities = 61/231 (26%), Positives = 93/231 (40%), Gaps = 38/231 (16%)

Query: 38  WPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDR 97
            PW V++   +       + CG VL+  +WV+TAAHC ++          +   LG  + 
Sbjct: 3   QPWHVAVYRFNK------YQCGGVLLDRNWVLTAAHCYNDK---------YQVWLGKNNF 47

Query: 98  TEEEKSEVRIPVERIRVHEEFH-------------NYHHDIALLKLSRPTSARDKGVRAV 144
            E+E S+    V +   H +F+             +Y +D+ LL+LS+P    D  V+ +
Sbjct: 48  LEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDV-VKPI 106

Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
            L    + P        +        K      L+ + + L     C   +   V     
Sbjct: 107 TL--PTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKV--TDA 162

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
            LC G++DG S  C  DSGGPL C        L GITS+G   CG     S
Sbjct: 163 MLCAGEMDGGSYTCEHDSGGPLIC-----DGILQGITSWGPEPCGEPTEPS 208

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.0 bits (206), Expect = 3e-19
 Identities = 50/202 (24%), Positives = 71/202 (35%), Gaps = 11/202 (5%)

Query: 230 LKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKL 289
             D      G  +F         R   +     +   S+      Q          LL+L
Sbjct: 34  YNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRL 93

Query: 290 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV 349
           S+P    D  V+ + L    + P        +        K      L+ + + L     
Sbjct: 94  SKPADITDV-VKPITL--PTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNED 150

Query: 350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAK 408
           C   +   V      LC G++DG S  C  DSGGPL C        L GITS+G   C +
Sbjct: 151 CDKAHEMKV--TDAMLCAGEMDGGSYTCEHDSGGPLIC-----DGILQGITSWGPEPCGE 203

Query: 409 SGYPDVYTKLSFYLPWIRKQIN 430
              P VYTKL  +  WIR+ + 
Sbjct: 204 PTEPSVYTKLIKFSSWIRETMA 225

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  106 bits (264), Expect = 5e-27
 Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 10/229 (4%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E+ R +WP Q+SLQ          H CG  LI  +WV+TAAHC+  ++       +
Sbjct: 2   VGGTEAQRNSWPSQISLQYRSGSSW--AHTCGGTLIRQNWVMTAAHCVDREL---TFRVV 56

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
                 + +   E+   V+  V     + +     +DIALL+L++  +        V   
Sbjct: 57  VGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPR 116

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
                  N       TGWG  +  G L   L+Q  +P  + ++C         +    +C
Sbjct: 117 AGTILANNSPCYI--TGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVC 174

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CGVGIRYS 255
            G  DG    C GDSGGPL C   +G++ + G+TSF S   C V  + +
Sbjct: 175 AGG-DGVRSGCQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPT 221

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 79.8 bits (195), Expect = 1e-17
 Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 317 QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGA 376
             C  TGWG  +  G L   L+Q  +P  + ++C         +    +C G  DG    
Sbjct: 125 SPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGG-DGVRSG 183

Query: 377 CIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRKQIN 430
           C GDSGGPL C   +G++ + G+TSF S  GC  +  P V+T++S Y+ WI   I 
Sbjct: 184 CQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  105 bits (261), Expect = 8e-27
 Identities = 62/229 (27%), Positives = 91/229 (39%), Gaps = 27/229 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G      + P+QVSL   +       H+CG  LI+  WVV+AAHC  + I        
Sbjct: 2   VGGYTCQENSVPYQVSLNSGY-------HFCGGSLINDQWVVSAAHCYKSRIQ------- 47

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
                 + +  E  +  V         + +   Y++DI L+KLS P     + V  V L 
Sbjct: 48  VRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNAR-VATVALP 106

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHL 206
            +         QC+ +GWG     G      L+ +  PL   + C       +      +
Sbjct: 107 SSC---APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFII--TDNMV 161

Query: 207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
           C G L+G   AC GDSGGP+ C        L GI S+G G C +     
Sbjct: 162 CVGFLEGGKDACQGDSGGPVVC-----NGELQGIVSWGYG-CALPDNPG 204

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.8 bits (216), Expect = 1e-20
 Identities = 50/160 (31%), Positives = 67/160 (41%), Gaps = 12/160 (7%)

Query: 272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
            P  +  T      L+KLS P     + V  V L  +         QC+ +GWG     G
Sbjct: 73  HPNFDRETYNNDIMLIKLSSPVKLNAR-VATVALPSSC---APAGTQCLISGWGNTLSSG 128

Query: 332 DLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
                 L+ +  PL   + C       +      +C G L+G   AC GDSGGP+ C   
Sbjct: 129 VNEPDLLQCLDAPLLPQADCEASSSFII--TDNMVCVGFLEGGKDACQGDSGGPVVC--- 183

Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
                L GI S+G GCA    P VYTK+  Y+ WI+  I 
Sbjct: 184 --NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score =  105 bits (261), Expect = 9e-27
 Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 19/222 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G ESI  + P+   L ++  +       CG  LI   +V+TAAHC   +         
Sbjct: 2   IGGVESIPHSRPYMAHLDIVTEKGL--RVICGGFLISRQFVLTAAHCKGRE--------- 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
            T +LG  D  + E ++ +I VE+  +HE +++  +   ++ L             V   
Sbjct: 51  ITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPL 110

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
            +    ++P   C A GWG+   +      LR++ + + +   C D        +   +C
Sbjct: 111 PSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYE---YKFQVC 167

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            G       A +GDSGGPL C          GI S+G     
Sbjct: 168 VGSPTTLRAAFMGDSGGPLLC-----AGVAHGIVSYGHPDAK 204

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 80.5 bits (197), Expect = 5e-18
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 11/130 (8%)

Query: 301 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVEL 360
             V L        +P   C A GWG+   +      LR++ + + +   C D        
Sbjct: 106 NVVPLPSPSDFI-HPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYE--- 161

Query: 361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSF 420
           +   +C G       A +GDSGGPL C          GI S+G   A    P ++T++S 
Sbjct: 162 YKFQVCVGSPTTLRAAFMGDSGGPLLC-----AGVAHGIVSYGHPDA--KPPAIFTRVST 214

Query: 421 YLPWIRKQIN 430
           Y+PWI   IN
Sbjct: 215 YVPWINAVIN 224

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 1e-26
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 18/232 (7%)

Query: 26  RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
            +I GKE    + P+  S+Q          H CG VLI P WV+TAAHC +         
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGH------HVCGGVLIDPQWVLTAAHCQYRFTK----G 51

Query: 86  ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
           +  T VLG    ++ E S+  + +++        +      ++ +   T+A+      + 
Sbjct: 52  QSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKML 111

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV--CRDKYGDSVELHG 203
              +     +  +  V                LR++ V + +  +   +  Y     +  
Sbjct: 112 HIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITK 171

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
             +C G   G   +C GD+GGPL C     +     I S G   CGV  +  
Sbjct: 172 DMVCAGDAKGQKDSCKGDAGGPLIC-----KGVFHAIVSGGHE-CGVATKPG 217

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (192), Expect = 3e-17
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 9/124 (7%)

Query: 310 KRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISV--CRDKYGDSVELHGGHLC 366
           K  +    +C  TGWG   P     S  LR++ V + +  +   +  Y     +    +C
Sbjct: 116 KTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVC 175

Query: 367 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLS-FYLPWI 425
            G   G   +C GD+GGPL C     +     I S G  C  +  P +YT L+  Y  WI
Sbjct: 176 AGDAKGQKDSCKGDAGGPLIC-----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWI 230

Query: 426 RKQI 429
           +  +
Sbjct: 231 KSNL 234

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 1e-26
 Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 29/230 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           ++G    + + P+Q +L             CG VLIHP WV+TAAHC   ++        
Sbjct: 2   VHGGPCDKTSHPYQAALYTSGH------LLCGGVLIHPLWVLTAAHCKKPNLQV------ 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHD--IALLKLSRPTSARDKGVRAVC 145
               LG  +  + E S+ +  V R  +H ++    HD  I LL+L+RP          + 
Sbjct: 50  ---FLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLS----ELIQ 102

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
               ++        C   GWG+          ++   + L +   C   Y   +      
Sbjct: 103 PLPLERDCSANTTSCHILGWGKTADGD-FPDTIQCAYIHLVSREECEHAYPGQI--TQNM 159

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
           LC G       +C GDSGGPL C       +L G+ S+G+  CG   +  
Sbjct: 160 LCAGDEKYGKDSCQGDSGGPLVC-----GDHLRGLVSWGNIPCGSKEKPG 204

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (195), Expect = 8e-18
 Identities = 49/235 (20%), Positives = 72/235 (30%), Gaps = 34/235 (14%)

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL--AGITSFGSGYCGVGIRYS 255
           ++   G  LCGG                    L    W L  A                 
Sbjct: 17  ALYTSGHLLCGG-------------------VLIHPLWVLTAAHCKKPNLQVFLGKHNLR 57

Query: 256 HRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNP 315
            R+              P  +  +      LL+L+RP          +     ++     
Sbjct: 58  QRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLS----ELIQPLPLERDCSAN 113

Query: 316 KQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG 375
              C   GWG+          ++   + L +   C   Y   +      LC G       
Sbjct: 114 TTSCHILGWGKTADGD-FPDTIQCAYIHLVSREECEHAYPGQI--TQNMLCAGDEKYGKD 170

Query: 376 ACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
           +C GDSGGPL C       +L G+ S+G+  C     P VYT +  Y  WI+K I
Sbjct: 171 SCQGDSGGPLVC-----GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 1e-26
 Identities = 77/238 (32%), Positives = 111/238 (46%), Gaps = 27/238 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I+GK + RG  PWQV L     +       CGAVLIHPSWV+TAAHC+            
Sbjct: 2   IDGKMTRRGDSPWQVVLLDSKKK-----LACGAVLIHPSWVLTAAHCMDESKK------- 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH--HDIALLKLSRPTSARDKGVRAVC 145
               LG++D    EK E+ + ++ + VH  +      +DIALL L++P +     +  +C
Sbjct: 50  LLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQT-IVPIC 108

Query: 146 LTDADKRP---VNPKQQCVATGWGRVKPKGDLV-----SKLRQIRVPLHNISVCRDKYGD 197
           L D+           Q+ + TGWG    +           L  I++P+   + C +   +
Sbjct: 109 LPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN 168

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
            V      LC G L     AC GDSGGP+  S   G W+L G+ S+G G CG+   Y 
Sbjct: 169 MV--SENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFLVGLVSWGEG-CGLLHNYG 222

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 8e-18
 Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRP---VNPKQQCVATGWGRVKPKGDLV-----SK 336
           ALL L++P +     +  +CL D+           Q+ + TGWG    +           
Sbjct: 90  ALLHLAQPATLSQT-IVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFV 148

Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
           L  I++P+   + C +   + V      LC G L     AC GDSGGP+  S   G W+L
Sbjct: 149 LNFIKIPVVPHNECSEVMSNMV--SENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFL 205

Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
            G+ S+G GC       VYTK+S YL WI   I
Sbjct: 206 VGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score =  104 bits (258), Expect = 2e-26
 Identities = 51/225 (22%), Positives = 83/225 (36%), Gaps = 22/225 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G     G  PWQ  L            +CG  ++   +++TAAHC++           
Sbjct: 2   VGGYNCKDGEVPWQALLINEENE-----GFCGGTILSEFYILTAAHCLYQAKRFKVRVGD 56

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
                 + ++ E  ++   + V           Y  DIA+L+L  P + R      V   
Sbjct: 57  R-----NTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFR----MNVAPA 107

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHL 206
                P     +C+ +GWG     G      L+ +  P+ + + C   Y   +       
Sbjct: 108 SLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKI--TSNMF 165

Query: 207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
           C G L+G   +C GDSGGP+ C        L G+ S+G G     
Sbjct: 166 CVGFLEGGKDSCQGDSGGPVVC-----NGQLQGVVSWGDGCAQKN 205

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 84.7 bits (208), Expect = 2e-19
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 311 RPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
            P     +C+ +GWG     G      L+ +  P+ + + C   Y   +       C G 
Sbjct: 112 APPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKI--TSNMFCVGF 169

Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           L+G   +C GDSGGP+ C        L G+ S+G GCA+   P VYTK+  Y+ WI+  I
Sbjct: 170 LEGGKDSCQGDSGGPVVC-----NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 224

Query: 430 N 430
            
Sbjct: 225 A 225

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (258), Expect = 3e-26
 Identities = 57/225 (25%), Positives = 83/225 (36%), Gaps = 22/225 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E    + P+ V L +           C   LI   WV+TAAHC  N          
Sbjct: 2   IGGNEVTPHSRPYMVLLSLDRK------TICAGALIAKDWVLTAAHCNLNKR-------- 47

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
              +LG    T EE ++  + V++   +  +     +  L  L     A+      +   
Sbjct: 48  SQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHL 107

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE--LHGGH 205
                 V P   C   GWGR          LR++ + + +  VC D+   +    +    
Sbjct: 108 PKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNM 167

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCG 249
           +C G L G   +C GDSG PL C          G+TSFG    CG
Sbjct: 168 VCAGSLRGGRDSCNGDSGSPLLC-----EGVFRGVTSFGLENKCG 207

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 2e-17
 Identities = 51/239 (21%), Positives = 78/239 (32%), Gaps = 30/239 (12%)

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL-AGITSFGSGYCGVGIRYSH 256
            + L    +C G                   +L    W L A   +       +   +S 
Sbjct: 17  LLSLDRKTICAG-------------------ALIAKDWVLTAAHCNLNKRSQVILGAHSI 57

Query: 257 RQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPK 316
            +         ++  +P+     +     L  L     A+      +         V P 
Sbjct: 58  TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPG 117

Query: 317 QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE--LHGGHLCGGQLDGFS 374
             C   GWGR          LR++ + + +  VC D+   +    +    +C G L G  
Sbjct: 118 TMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGR 177

Query: 375 GACIGDSGGPLQCSLKDGRWYLAGITSFG--SGCAKSGYPDVYTKLS-FYLPWIRKQIN 430
            +C GDSG PL C          G+TSFG  + C     P VY  LS  +L WI   I 
Sbjct: 178 DSCNGDSGSPLLC-----EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK 231

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  103 bits (257), Expect = 3e-26
 Identities = 58/224 (25%), Positives = 89/224 (39%), Gaps = 21/224 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E+   + P+   LQ++    G     CG  LI   +V+TAAHC  + I        
Sbjct: 2   IGGHEAKPHSRPYMAYLQIMDEYSG--SKKCGGFLIREDFVLTAAHCSGSKIQVTLG--- 56

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
                   +  E+EK +  IPV +I  H  ++     +DI LLKL      R   V+ + 
Sbjct: 57  ------AHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAK-RSSAVKPLN 109

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L   + +   P   C   GWG++ P G     L+++ + +     C     +  +     
Sbjct: 110 LPRRNVKV-KPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEI 168

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             G        +  GDSGGPL C     +   AGI S+G     
Sbjct: 169 CAGDPKIKR-ASFRGDSGGPLVC-----KKVAAGIVSYGQNDGS 206

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.1 bits (188), Expect = 7e-17
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 312 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            V P   C   GWG++ P G     L+++ + +     C     +  +       G    
Sbjct: 116 KVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKI 175

Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
               +  GDSGGPL C     +   AGI S+G        P  +TK+S +L WI+K + 
Sbjct: 176 KR-ASFRGDSGGPLVC-----KKVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTMK 226

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (255), Expect = 6e-26
 Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 24/224 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G        P+QVSL   +       H+CG  LI+  WVV+AAHC  +          
Sbjct: 2   VGGYTCGANTVPYQVSLNSGY-------HFCGGSLINSQWVVSAAHCYKSG--------- 45

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               LG+ +    E +E  I   +  VH  +++   +  ++ +   ++A      A    
Sbjct: 46  IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISL 105

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
                     Q  ++               L+ ++ P+ + S C+  Y   +       C
Sbjct: 106 PTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQI--TSNMFC 162

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
              L+G   +C GDSGGP+ C        L GI S+GSG     
Sbjct: 163 AYGLEGKGDSCQGDSGGPVVC-----SGKLQGIVSWGSGCQAKN 201

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.8 bits (203), Expect = 7e-19
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 319 CVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACI 378
            ++               L+ ++ P+ + S C+  Y   +       C   L+G   +C 
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQI--TSNMFCAYGLEGKGDSCQ 174

Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           GDSGGP+ C        L GI S+GSGC     P VYTK+  Y+ WI++ I 
Sbjct: 175 GDSGGPVVC-----SGKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIA 221

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 8e-26
 Identities = 56/228 (24%), Positives = 84/228 (36%), Gaps = 18/228 (7%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+E+   A P+  S+Q+         H CG VL+   WV++AAHC+ +         L
Sbjct: 2   LGGREAEAHARPYMASVQLNGA------HLCGGVLVAEQWVLSAAHCLEDAADGKVQVLL 55

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
                     ++ E S+    V R   H +      D  LL L     A           
Sbjct: 56  G-----AHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPW 110

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
               R V P   C   GWG V   G     L+ + +P+ + + C  +      +    +C
Sbjct: 111 QRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMC 170

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
                    +C GDSGGPL C        L G+ + GS  CG   +  
Sbjct: 171 AESNRR--DSCKGDSGGPLVC-----GGVLEGVVTSGSRVCGNRKKPG 211

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (175), Expect = 4e-15
 Identities = 54/239 (22%), Positives = 76/239 (31%), Gaps = 35/239 (14%)

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL------AGITSFGSGYCGVG 251
           SV+L+G HLCGG                    L   +W L                    
Sbjct: 17  SVQLNGAHLCGG-------------------VLVAEQWVLSAAHCLEDAADGKVQVLLGA 57

Query: 252 IRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKR 311
              S  +P             P     T      LL+LS    A               R
Sbjct: 58  HSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEK--ATLGPAVRPLPWQRVDR 115

Query: 312 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            V P   C   GWG V   G     L+ + +P+ + + C  +      +    +C     
Sbjct: 116 DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNR 175

Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQI 429
               +C GDSGGPL C        L G+ + GS  C     P +YT+++ Y  WI   +
Sbjct: 176 R--DSCKGDSGGPLVC-----GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score =  101 bits (250), Expect = 3e-25
 Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 19/233 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+ +   +WPWQ+SLQ  +       H CG  LI   WV+TAAHC+ +          
Sbjct: 2   VGGRVAQPNSWPWQISLQ--YKSGSSYYHTCGGSLIRQGWVMTAAHCVDSART------- 52

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVRA 143
           W  VLG+ +    E  E  + V  + +H  +++      +DIALL+L+   S       A
Sbjct: 53  WRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLA 112

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
                    P N    C  TGWG+    G L   L+Q  +P  + + C         +  
Sbjct: 113 ALPPSNQILPNN--NPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKT 170

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CGVGIRYS 255
             +C G   G +  C GDSGGPL C   +G +Y+ G+TSF S   C    + +
Sbjct: 171 TMVCAG--GGANSGCNGDSGGPLNCQ-VNGSYYVHGVTSFVSSSGCNASKKPT 220

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 75.6 bits (184), Expect = 3e-16
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 6/185 (3%)

Query: 247 YCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLT 306
             G     ++     I    S+     W +   +      L      ++ +  V+   L 
Sbjct: 56  VLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALP 115

Query: 307 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 366
               + +     C  TGWG+    G L   L+Q  +P  + + C         +    +C
Sbjct: 116 P-SNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVC 174

Query: 367 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF--GSGCAKSGYPDVYTKLSFYLPW 424
            G   G +  C GDSGGPL C   +G +Y+ G+TSF   SGC  S  P V+T++S Y+ W
Sbjct: 175 AG--GGANSGCNGDSGGPLNCQ-VNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISW 231

Query: 425 IRKQI 429
           +   +
Sbjct: 232 MNGIM 236

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 99.8 bits (247), Expect = 9e-25
 Identities = 53/228 (23%), Positives = 76/228 (33%), Gaps = 21/228 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E       + V+             +CG  LI+P WVVTAAHC   D         
Sbjct: 2   IGGNECDINEHRFLVAFFNTTG------FFCGGTLINPEWVVTAAHCDSTDFQM------ 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
              V       E+E++                    DI L+KL +P S     +  + L 
Sbjct: 50  QLGVHSKKVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKH-IAPLSLP 108

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
                P       +         K           + L + +VC+  Y + +  +     
Sbjct: 109 --SSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCA 166

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
           G  + G    C GDSGGPL C          GI S+G+  CG G +  
Sbjct: 167 GI-VQGGKDTCGGDSGGPLIC-----NGQFQGIVSYGAHPCGQGPKPG 208

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 74.4 bits (181), Expect = 7e-16
 Identities = 44/237 (18%), Positives = 73/237 (30%), Gaps = 32/237 (13%)

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAG---ITSFGSGYCGVGIRY 254
           +     G  CGG                   +L +  W +      ++      GV  + 
Sbjct: 17  AFFNTTGFFCGG-------------------TLINPEWVVTAAHCDSTDFQMQLGVHSKK 57

Query: 255 SHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVN 314
              +       +         N         L+KL +P S     +  + L      P  
Sbjct: 58  VLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKH-IAPLSLPS--SPPSV 114

Query: 315 PKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 374
                +         K           + L + +VC+  Y + +  +     G  + G  
Sbjct: 115 GSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGI-VQGGK 173

Query: 375 GACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
             C GDSGGPL C          GI S+G+  C +   P +YT +  Y  WI++ I 
Sbjct: 174 DTCGGDSGGPLIC-----NGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIA 225

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (246), Expect = 1e-24
 Identities = 58/226 (25%), Positives = 86/226 (38%), Gaps = 16/226 (7%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+E   G  PWQ  L            +CG  ++   +++TAAHC++           
Sbjct: 2   VGGQECKDGECPWQALLINEENE-----GFCGGTILSEFYILTAAHCLYQAKR------- 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
           +   +GD +  +EE  E    VE +  H  F    Y  DIA+L+L  P + R   V   C
Sbjct: 50  FKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN-VAPAC 108

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L + D        Q      G  +         R   + +  +     K   S  +    
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
            C G       AC GDSGGP     KD  +++ GI S+G G    G
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKG 213

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (188), Expect = 8e-17
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 307 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 366
           D  +  +  ++  + +G+GR   KG   ++L+ + VP  + + C+      +  +     
Sbjct: 113 DWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAG 172

Query: 367 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR 426
                    AC GDSGGP     KD  +++ GI S+G GCA+ G   +YTK++ +L WI 
Sbjct: 173 YD--TKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWID 229

Query: 427 KQI 429
           + +
Sbjct: 230 RSM 232

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (246), Expect = 2e-24
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 22/247 (8%)

Query: 14  CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
           CGV       + R+I G ++    +PWQV              W G  LI+  WV+TAAH
Sbjct: 1   CGVPREPFEEKQRIIGGSDADIKNFPWQVFFDN---------PWAGGALINEYWVLTAAH 51

Query: 74  CI---HNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKL 130
            +         +    + T+ L        E   +    + + V E   N+ +DIAL++L
Sbjct: 52  VVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRL 111

Query: 131 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV 190
             P               +    +      + +GWGR + +   V   +  R+P+  +  
Sbjct: 112 KDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRL-KAARLPVAPLRK 170

Query: 191 CRDKYGDSVE------LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD--GRWYLAGITS 242
           C++   +         +   ++     +    +C GDSGG       +   ++Y AG+ S
Sbjct: 171 CKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVS 230

Query: 243 FGSGYCG 249
           +G   CG
Sbjct: 231 WGPQ-CG 236

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 11/138 (7%)

Query: 301 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE- 359
             +CL                        K D   +L+  R+P+  +  C++   +    
Sbjct: 122 SPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTA 181

Query: 360 -----LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD--GRWYLAGITSFGSGCAKSGYP 412
                +   ++     +    +C GDSGG       +   ++Y AG+ S+G  C   G  
Sbjct: 182 DAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQC---GTY 238

Query: 413 DVYTKLSFYLPWIRKQIN 430
            +YT++  Y+ WI K + 
Sbjct: 239 GLYTRVKNYVDWIMKTMQ 256

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (243), Expect = 4e-24
 Identities = 53/232 (22%), Positives = 81/232 (34%), Gaps = 21/232 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G+++  G +PWQV   +            G  L+   W++TAAH ++           
Sbjct: 2   IGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNAS 53

Query: 88  WTAVLGDWDRTEEEKSEV----RIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRA 143
               LG  +  E  K       R+ V      +E +N+  DIALL+L    +     +  
Sbjct: 54  LDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 113

Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY---GDSVE 200
               +     +           G    +  +   LR +R+P+ N   C +          
Sbjct: 114 CLPDNDTFYDLGLMGYV----SGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDV 169

Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSFGSGYCGVG 251
                 C G       AC GDSGG       +  RW   GI S+G G C  G
Sbjct: 170 FSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CSRG 220

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 3e-14
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 338 RQIRVPLHNISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GR 393
           R +R+P+ N   C +                C G       AC GDSGG       +  R
Sbjct: 145 RFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDR 204

Query: 394 WYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
           W   GI S+G GC++      YTK+  Y+ WI+K++
Sbjct: 205 WVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEM 238

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (239), Expect = 2e-23
 Identities = 73/231 (31%), Positives = 104/231 (45%), Gaps = 19/231 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + GK   +G  PWQV L V           CG  LI+  WVV+AAHC       +     
Sbjct: 2   VGGKVCPKGECPWQVLLLVNGA------QLCGGTLINTIWVVSAAHCFDK----IKNWRN 51

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
             AVLG+ D +E +  E    V ++ +   +     +HDIALL+L +P       V  +C
Sbjct: 52  LIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVV-LTDHVVPLC 110

Query: 146 LTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY---GDSVE 200
           L +    +R +   +  + +GWG++  +G    +L  + VP      C  +    GDS  
Sbjct: 111 LPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPN 170

Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
           +     C G  DG   +C GDSGGP       G WYL GI S+G G   VG
Sbjct: 171 ITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQGCATVG 220

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (186), Expect = 2e-16
 Identities = 60/243 (24%), Positives = 93/243 (38%), Gaps = 29/243 (11%)

Query: 198 SVELHGGHLCGGQL--DGF---SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGI 252
            + ++G  LCGG L    +   +  C              G   L+             +
Sbjct: 17  LLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQV 76

Query: 253 RYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDAD--K 310
                                     T+    ALL+L +P       V  +CL +    +
Sbjct: 77  II-----------------PSTYVPGTTNHDIALLRLHQPVV-LTDHVVPLCLPERTFSE 118

Query: 311 RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY---GDSVELHGGHLCG 367
           R +   +  + +GWG++  +G    +L  + VP      C  +    GDS  +     C 
Sbjct: 119 RTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCA 178

Query: 368 GQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK 427
           G  DG   +C GDSGGP       G WYL GI S+G GCA  G+  VYT++S Y+ W++K
Sbjct: 179 GYSDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQK 237

Query: 428 QIN 430
            + 
Sbjct: 238 LMR 240

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 95.2 bits (235), Expect = 3e-23
 Identities = 52/224 (23%), Positives = 79/224 (35%), Gaps = 24/224 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G  + +G +P+ V L             CG  L     V+TAAHC+            
Sbjct: 2   VGGTRAAQGEFPFMVRLS----------MGCGGALYAQDIVLTAAHCVSGS----GNNTS 47

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
            TA  G  D        V++   ++     ++    D AL+KL++P +            
Sbjct: 48  ITATGGVVDLQSSSA--VKVRSTKVLQAPGYNGTGKDWALIKLAQPIN--------QPTL 97

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
                    +      GWG  +  G     L +  VP  + + CR  YG+ +  +     
Sbjct: 98  KIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICA 157

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
           G    G    C GDSGGP+        W   GI S+G G    G
Sbjct: 158 GYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPG 201

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 84.8 bits (208), Expect = 2e-19
 Identities = 36/114 (31%), Positives = 49/114 (42%)

Query: 317 QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGA 376
                 GWG  +  G     L +  VP  + + CR  YG+ +  +     G    G    
Sbjct: 108 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDT 167

Query: 377 CIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           C GDSGGP+        W   GI S+G GCA+ GYP VYT++S +   I     
Sbjct: 168 CQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAAR 221

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (234), Expect = 4e-23
 Identities = 57/222 (25%), Positives = 81/222 (36%), Gaps = 23/222 (10%)

Query: 30  GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT 89
           G E    + P+   L+++         +CG  LI  ++V+TAAHC              T
Sbjct: 2   GTECKPHSRPYMAYLEIVTSNGP--SKFCGGFLIRRNFVLTAAHCAGRS---------IT 50

Query: 90  AVLGDWDRTEEEKSEVRIPVERIRVH--EEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
             LG  + TEEE +  ++ V +   H        HHDI LLKL    S           +
Sbjct: 51  VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPS 110

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
             +  P     +    GWGR          L+++++ L +   C          H   LC
Sbjct: 111 QFNFVPPGRMCRV--AGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDF---DHNLQLC 165

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            G       A  GDSGGPL C          GI S+G     
Sbjct: 166 VGNPRKTKSAFKGDSGGPLLC-----AGVAQGIVSYGRSDAK 202

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 5e-13
 Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 314 NPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF 373
            P + C   GWGR          L+++++ L +   C          H   LC G     
Sbjct: 116 PPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFD---HNLQLCVGNPRKT 172

Query: 374 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
             A  GDSGGPL C          GI S+G   A    P V+T++S Y PWI + + 
Sbjct: 173 KSAFKGDSGGPLLC-----AGVAQGIVSYGRSDA--KPPAVFTRISHYRPWINQILQ 222

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (232), Expect = 1e-22
 Identities = 50/228 (21%), Positives = 73/228 (32%), Gaps = 19/228 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           +NG  + R    W VSL+  +       H CG  LI  SWV+TA  C  +         L
Sbjct: 2   VNGIPT-RTNIGWMVSLRYRNK------HICGGSLIKESWVLTARQCFPSRDLKDYEAWL 54

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               +             +           +     D+ L+KL+RP    D         
Sbjct: 55  GIHDVHGRGDE-------KCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPN 107

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
                P          G+  +         LR   + +     C   +   V L+   +C
Sbjct: 108 YGSTIPEKTSCSVYGWGYTGLINYDG---LLRVAHLYIMGNEKCSQHHRGKVTLNESEIC 164

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
            G     SG C GD GGPL C  +     + G+   G G C +  R  
Sbjct: 165 AGAEKIGSGPCEGDYGGPLVCE-QHKMRMVLGVIVPGRG-CAIPNRPG 210

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (189), Expect = 7e-17
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 338 RQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLA 397
           R   + +     C   +   V L+   +C G     SG C GD GGPL C  +     + 
Sbjct: 136 RVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCE-QHKMRMVL 194

Query: 398 GITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           G+   G GCA    P ++ ++++Y  WI K I 
Sbjct: 195 GVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIIL 227

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (232), Expect = 1e-22
 Identities = 47/233 (20%), Positives = 78/233 (33%), Gaps = 16/233 (6%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
             G+++  G +PWQV +                 L++ +WV+TAAH ++           
Sbjct: 2   YGGQKAKPGDFPWQVLIL--------GGTTAAGALLYDNWVLTAAHAVYEQKHD---ASA 50

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               +G   R     ++       I           +   L         +  +  +CL 
Sbjct: 51  LDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 110

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG---- 203
             +                 +  +G L   L  + +P+ +   C   Y       G    
Sbjct: 111 RKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTA 170

Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSFGSGYCGVGIRYS 255
             LC G   G   +C GDSGG L     +  RW++ GI S+GS  CG   +Y 
Sbjct: 171 NMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYG 223

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 1e-15
 Identities = 49/244 (20%), Positives = 72/244 (29%), Gaps = 31/244 (12%)

Query: 199 VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL------AGITSFGSGYCGVGI 252
           V + GG    G                   +L    W L             S       
Sbjct: 16  VLILGGTTAAG-------------------ALLYDNWVLTAAHAVYEQKHDASALDIRMG 56

Query: 253 RYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP 312
                 P                     F +   L         +  +  +CL   +   
Sbjct: 57  TLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAES 116

Query: 313 VNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG----GHLCGG 368
                         +  +G L   L  + +P+ +   C   Y       G      LC G
Sbjct: 117 FMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAG 176

Query: 369 QLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIR 426
              G   +C GDSGG L     +  RW++ GI S+GS  C ++G   VYTK+  Y+PWI 
Sbjct: 177 LESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIE 236

Query: 427 KQIN 430
             I+
Sbjct: 237 NIIS 240

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 93.6 bits (231), Expect = 1e-22
 Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 29/225 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E++  +WP Q +L +         ++CG  LI P W++TAAHC+    F       
Sbjct: 2   VGGVEAVPNSWPHQAALFIDDM------YFCGGSLISPEWILTAAHCMDGAGF------- 48

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVC 145
              VLG  +  E+E ++V I      VHE +++    +DIA+++L  P +       A+ 
Sbjct: 49  VDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLT----AAIA 104

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
                   V        TGWG        +   LRQ+ VP+ + + C   YG   + +  
Sbjct: 105 TVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNIC 164

Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
                   G  G C GDSGGPL            GITSFG+    
Sbjct: 165 IDS----TGGKGTCNGDSGGPLNY-----NGLTYGITSFGAAAGC 200

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 71.6 bits (174), Expect = 6e-15
 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 314 NPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDG 372
                   TGWG        +   LRQ+ VP+ + + C   YG   + +          G
Sbjct: 114 GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDS----TG 169

Query: 373 FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCA-KSGYPDVYTKLSFYLPWIRKQINI 431
             G C GDSGGPL            GITSFG+    ++GYPD +T+++++L WI+ Q  I
Sbjct: 170 GKGTCNGDSGGPLNY-----NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTGI 224

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.9 bits (229), Expect = 2e-22
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 19/222 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E+   + P+   L           H CG  L+   +V+TAAHC+ +          
Sbjct: 2   IGGHEAKPHSRPYMAFLLFKTSGKS---HICGGFLVREDFVLTAAHCLGSS--------- 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               LG  +  E E+++  IPV R   H ++++      ++ L     A      +    
Sbjct: 50  INVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINL 109

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
                 V P   C   GWGR+        KL+++ + + +   C  ++ + +      +C
Sbjct: 110 PRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFT--QIC 167

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            G       +  GDSGGPL C          GI S+G     
Sbjct: 168 AGDPSKRKNSFSGDSGGPLVC-----NGVAQGIVSYGRNDGT 204

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.0 bits (167), Expect = 4e-14
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 312 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            V P   C   GWGR+        KL+++ + + +   C  ++ + +      +C G   
Sbjct: 115 EVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFT--QICAGDPS 172

Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
               +  GDSGGPL C          GI S+G        PDVYT++S +L WI   +
Sbjct: 173 KRKNSFSGDSGGPLVC-----NGVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 92.1 bits (227), Expect = 4e-22
 Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 24/224 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + GK++  G +P+QVSL++         H CGA ++  + V+TAAHC+        +   
Sbjct: 2   VGGKDAPVGKYPYQVSLRLSGS------HRCGASILDNNNVLTAAHCVDGLSNLNRLKVH 55

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
                        +  +  +       + +     +D+AL+ L+ P    D       + 
Sbjct: 56  VGTNYLSESGDVYDVEDAVVN-----KNYDDFLLRNDVALVHLTNPIKFND---LVQPIK 107

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
            +          C  TGWG  +  G+  + L++I + +H    C       ++ H     
Sbjct: 108 LSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSH----I 163

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
                   GAC GDSGGPL            GI SFGS  C +G
Sbjct: 164 CTLTKRGEGACHGDSGGPLVA-----NGAQIGIVSFGSP-CALG 201

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 69.8 bits (169), Expect = 2e-14
 Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 317 QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGA 376
             C  TGWG  +  G+  + L++I + +H    C       ++ H             GA
Sbjct: 118 NPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSH----ICTLTKRGEGA 173

Query: 377 CIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
           C GDSGGPL            GI SFGS CA  G PDVYT++S ++ WI   + 
Sbjct: 174 CHGDSGGPLVA-----NGAQIGIVSFGSPCA-LGEPDVYTRVSSFVSWINANLK 221

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (226), Expect = 6e-22
 Identities = 51/224 (22%), Positives = 78/224 (34%), Gaps = 26/224 (11%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+++    +P+  S+Q          H+CG  LIH  +V+TAA C  +    +    L
Sbjct: 2   VGGRKARPRQFPFLASIQNQGR------HFCGGALIHARFVMTAASCFQSQNPGVSTVVL 55

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               L   +R   +   +    E      +     +D+ LL+L R  +            
Sbjct: 56  GAYDLRRRERQSRQTFSISSMSEN---GYDPQQNLNDLMLLQLDREANLTSSVTILPLPL 112

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
                      +C   GWG  +  G L    R + V +     C             ++C
Sbjct: 113 QNATVEAG--TRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQC----------RPNNVC 160

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
            G L    G C GD G PL C          G+ SF  G CG G
Sbjct: 161 TGVLTRRGGICNGDGGTPLVC-----EGLAHGVASFSLGPCGRG 199

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 5e-12
 Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 312 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            V    +C   GWG  +  G L    R + V +     C             ++C G L 
Sbjct: 116 TVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQC----------RPNNVCTGVLT 165

Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
              G C GD G PL C          G+ SF  G      PD +T+++ +  WI   +N
Sbjct: 166 RRGGICNGDGGTPLVC-----EGLAHGVASFSLGPC-GRGPDFFTRVALFRDWIDGVLN 218

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (226), Expect = 6e-22
 Identities = 62/228 (27%), Positives = 93/228 (40%), Gaps = 25/228 (10%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G E+   + P+  SLQ+         H+CG  LIHPS+V+TAAHC+ +    L    L
Sbjct: 2   VGGHEAQPHSRPYMASLQMRGNPGS---HFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVL 58

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               +   + T++  S  ++       + +  N  +DI L++LS P +     V  V L 
Sbjct: 59  GAHNVRTQEPTQQHFSVAQV----FLNNYDAENKLNDILLIQLSSPANLSAS-VATVQLP 113

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
               +PV    QC+A GWGRV         L+++ V +             V        
Sbjct: 114 Q-QDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRK---- 168

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
                  +G C GDSGGPL C        + GI SF    C   +   
Sbjct: 169 -------AGICFGDSGGPLIC-----DGIIQGIDSFVIWGCATRLFPD 204

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 2e-13
 Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 19/159 (11%)

Query: 272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG 331
               +         L++LS P +     V  V L     +PV    QC+A GWGRV    
Sbjct: 80  LNNYDAENKLNDILLIQLSSPANLSAS-VATVQLPQ-QDQPVPHGTQCLAMGWGRVGAHD 137

Query: 332 DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD 391
                L+++ V +             V               +G C GDSGGPL C    
Sbjct: 138 PPAQVLQELNVTVVTFFCRPHNICTFVPRRK-----------AGICFGDSGGPLIC---- 182

Query: 392 GRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
               + GI SF   GCA   +PD +T+++ Y+ WIR  +
Sbjct: 183 -DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 91.8 bits (226), Expect = 8e-22
 Identities = 53/222 (23%), Positives = 85/222 (38%), Gaps = 11/222 (4%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G  +  G +PWQ+S Q    + G   H CGA L+  +  ++A+HC+   + +      
Sbjct: 2   IGGTNASPGEFPWQLSQQR---QSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIA 58

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
                 D   T+    +          +       +   +  L   TS    G     + 
Sbjct: 59  GLWQQSDTSGTQTANVDSYTM----HENYGAGTASYSNDIAILHLATSISLGGNIQAAVL 114

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS--VELHGGH 205
            A+         CV +GWGR     +L   L++  +P+   + C           +   H
Sbjct: 115 PANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNH 174

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY 247
           +C     G +GAC GDSGGPL C   DG   + G+TS+    
Sbjct: 175 ICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVGVTSWVVSS 214

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 68.7 bits (166), Expect = 8e-14
 Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 312 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS--VELHGGHLCGGQ 369
                  CV +GWGR     +L   L++  +P+   + C           +   H+C   
Sbjct: 120 NDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQD 179

Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF----GSGCAKSGYPDVYTKLSFYLPWI 425
             G +GAC GDSGGPL C   DG   + G+TS+    G G     YP VYT++S YL WI
Sbjct: 180 PAGNTGACNGDSGGPLNC--PDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

Query: 426 R 426
            
Sbjct: 238 G 238

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (223), Expect = 1e-21
 Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 28/228 (12%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           + G+ +   AWP+ VSLQ+         H+CGA LI P++V++AAHC+ N         L
Sbjct: 2   VGGRRARPHAWPFMVSLQLRGG------HFCGATLIAPNFVMSAAHCVANVNVRAVRVVL 55

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               L   + T +  +  RI         +  N  +DI +L+L+   +       A    
Sbjct: 56  GAHNLSRREPTRQVFAVQRIF----ENGYDPVNLLNDIVILQLNGSATINANVQVAQLPA 111

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
              +       QC+A GWG +     + S L+++ V +      R            ++C
Sbjct: 112 QGRRLG--NGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRS-----------NVC 158

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYS 255
                  +G C GDSG PL C        + GI SF  G C  G+   
Sbjct: 159 TLVRGRQAGVCFGDSGSPLVC-----NGLIHGIASFVRGGCASGLYPD 201

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 9e-12
 Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 308 ADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCG 367
           A  R +    QC+A GWG +     + S L+++ V +      R            ++C 
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRS-----------NVCT 159

Query: 368 GQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIR 426
                 +G C GDSG PL C        + GI SF   GCA   YPD +  ++ ++ WI 
Sbjct: 160 LVRGRQAGVCFGDSGSPLVC-----NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWID 214

Query: 427 KQI 429
             I
Sbjct: 215 SII 217

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (224), Expect = 1e-21
 Identities = 58/224 (25%), Positives = 90/224 (40%), Gaps = 22/224 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G E+   + P+   L +   +       CG  LI   +V+TAAHC  +          
Sbjct: 2   IGGHEAKPHSRPYMAYLMIWDQKSL---KRCGGFLIQDDFVLTAAHCWGSS--------- 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
               LG  +  E+E ++  IPV+R   H  ++  N+ +DI LL+L R    R + V+ + 
Sbjct: 50  INVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAK-RTRAVQPLR 108

Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
           L     + V P Q C   GWG+  P G     L+++++ +     C        +     
Sbjct: 109 LPSNKAQ-VKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIEL 167

Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
             G      +    GDSGGPL C          GI S+G     
Sbjct: 168 CVGDPEIKKTSFK-GDSGGPLVC-----NKVAQGIVSYGRNNGM 205

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 1e-13
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 312 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
            V P Q C   GWG+  P G     L+++++ +     C        +       G    
Sbjct: 115 QVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEI 174

Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
             +    GDSGGPL C          GI S+G        P   TK+S ++ WI+K + 
Sbjct: 175 KKTSFK-GDSGGPLVC-----NKVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTMK 225

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 8e-19
 Identities = 50/222 (22%), Positives = 79/222 (35%), Gaps = 20/222 (9%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           I G+ES   + P+   LQ+  P        CG  L+   +V+TAAHC  ++         
Sbjct: 2   IGGRESRPHSRPYMAYLQIQSPAGQ---SRCGGFLVREDFVLTAAHCWGSN--------- 49

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               LG  +    E ++  I   R   H +++       ++ L      R          
Sbjct: 50  INVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVAL 109

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
              +  + P   C   GWGRV  +    +  R++++ +     C   +G         +C
Sbjct: 110 PRAQEGLRPGTLCTVAGWGRVSMRRGTDTL-REVQLRVQRDRQCLRIFGSYD--PRRQIC 166

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
            G       A  GDSGGPL C          GI S+G     
Sbjct: 167 VGDRRERKAAFKGDSGGPLLC-----NNVAHGIVSYGKSSGV 203

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 4e-13
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 314 NPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF 373
            P   C   GWGRV  +    +  R++++ +     C   +G         +C G     
Sbjct: 117 RPGTLCTVAGWGRVSMRRGTDTL-REVQLRVQRDRQCLRIFGSYD--PRRQICVGDRRER 173

Query: 374 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
             A  GDSGGPL C          GI S+G        P+V+T++S +LPWIR  + 
Sbjct: 174 KAAFKGDSGGPLLC-----NNVAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTMR 223

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 81.8 bits (200), Expect = 2e-18
 Identities = 47/222 (21%), Positives = 73/222 (32%), Gaps = 19/222 (8%)

Query: 28  INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
           ING E+  G +P+Q  L +          WCG  LI   W++TAAHC+H+ +        
Sbjct: 2   INGYEAYTGLFPYQAGLDITLQDQR--RVWCGGSLIDNKWILTAAHCVHDAVS------- 52

Query: 88  WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
               LG   + E E   V               Y +D+AL+K+       +     +   
Sbjct: 53  VVVYLGSAVQYEGEA-VVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSG 111

Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
           +            V+               L+     + +   C  +Y   + +      
Sbjct: 112 EELNNKFENIWATVSGWGQSNTDT----VILQYTYNLVIDNDRCAQEYPPGIIVESTICG 167

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
                     C GDSGGP        +  L G+ SF SG   
Sbjct: 168 DTSDGKS--PCFGDSGGPFVL---SDKNLLIGVVSFVSGAGC 204

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 63.3 bits (152), Expect = 5e-12
 Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 30/236 (12%)

Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL-AGITSFGSGYCGVGIRYSH 256
           +++      CGG                   SL D +W L A      +    V +  + 
Sbjct: 21  TLQDQRRVWCGG-------------------SLIDNKWILTAAHCVHDAVSVVVYLGSAV 61

Query: 257 RQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPK 316
           +             +    N  T     AL+K+       +     +   +         
Sbjct: 62  QYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENI 121

Query: 317 QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGA 376
              V+               L+     + +   C  +Y   + +                
Sbjct: 122 WATVSGWGQSNTDT----VILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKS--P 175

Query: 377 CIGDSGGPLQCSLKDGRWYLAGITSFGSGCA-KSGYPDVYTKLSFYLPWIRKQINI 431
           C GDSGGP        +  L G+ SF SG   +SG P  +++++ Y+ WI++   I
Sbjct: 176 CFGDSGGPFVL---SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGI 228

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 78.2 bits (191), Expect = 2e-17
 Identities = 26/215 (12%), Positives = 51/215 (23%), Gaps = 34/215 (15%)

Query: 36  GAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDW 95
              P+     +           C   LI P+ ++T  HC++N   S       +   G  
Sbjct: 15  RVAPYNSIAYITFGG-----SSCTGTLIAPNKILTNGHCVYNT-ASRSYSAKGSVYPGMN 68

Query: 96  DRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVN 155
           D T    S           +       +D A++K                     +    
Sbjct: 69  DSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRS------IRQVTNL 122

Query: 156 PKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFS 215
                  +G+   K +        ++   +         Y                    
Sbjct: 123 TGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYY------------------TI 164

Query: 216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV 250
               G+SG  +     D    + G+ + G     +
Sbjct: 165 DTFSGNSGSAML----DQNQQIVGVHNAGYSNGTI 195

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 54.0 bits (128), Expect = 5e-09
 Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 23/118 (19%)

Query: 312 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 371
                     +G+   K +        ++   +         Y                 
Sbjct: 120 TNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYY----------------- 162

Query: 372 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAK-SGYPDVYTKLSFYLPWIRKQ 428
                  G+SG  +     D    + G+ + G      +G P        ++ + + Q
Sbjct: 163 -TIDTFSGNSGSAML----DQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ 215

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 76.6 bits (187), Expect = 2e-16
 Identities = 29/224 (12%), Positives = 47/224 (20%), Gaps = 27/224 (12%)

Query: 37  AWPWQVSLQVLHPRLGLMPHWCGAVLIHPS------WVVTAAHCIHNDIFSLPIPELWTA 90
                +     + + G     C   L++ +      + +TA HC               +
Sbjct: 17  GRRDIIRAVGAYSKSGT--LACTGSLVNNTANDRKMYFLTAHHCGMGT------ASTAAS 68

Query: 91  VLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDAD 150
           ++  W+           P                  +                  L + +
Sbjct: 69  IVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKATYAT--------SDFTLLELN 120

Query: 151 KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL---HNISVCRDKYGDSVELHGGHLC 207
               NP       GW R          +    V      N +               HL 
Sbjct: 121 N-AANPAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLN 179

Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
                       G SG P+    K     L G  S  S   G  
Sbjct: 180 VQWQPSGGVTEPGSSGSPIYSPEKRVLGQLHGGPSSCSA-TGTN 222

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 65.0 bits (157), Expect = 2e-12
 Identities = 29/229 (12%), Positives = 54/229 (23%), Gaps = 29/229 (12%)

Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAG---ITSFGSGYCGVGIRYSHRQP 259
           G   C G L       + ++    +       ++L          S    + + ++++  
Sbjct: 32  GTLACTGSL-------VNNTANDRK------MYFLTAHHCGMGTASTAASIVVYWNYQNS 78

Query: 260 RLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQC 319
                     GA    ++  +   + +                  L + +    NP    
Sbjct: 79  TCRAPNTPASGANGDGSMSQTQSGSTVKATYAT--------SDFTLLELNN-AANPAFNL 129

Query: 320 VATGWGRVKPKGDLVSKLRQIRVPL---HNISVCRDKYGDSVELHGGHLCGGQLDGFSGA 376
              GW R          +    V      N +               HL           
Sbjct: 130 FWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVT 189

Query: 377 CIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWI 425
             G SG P+    K     L G  S  S    +   D Y ++       
Sbjct: 190 EPGSSGSPIYSPEKRVLGQLHGGPSSCSATG-TNRSDQYGRVFTSWTGG 237

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSF 420
           +G       +   + +  GDSGG              GI S  SGC+ +    ++  ++ 
Sbjct: 123 YGDGPVYNMVRTTACSAGGDSGGAHFA-----GSVALGIHSGSSGCSGTAGSAIHQPVTE 177

Query: 421 YL 422
            L
Sbjct: 178 AL 179

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 26/185 (14%), Positives = 44/185 (23%), Gaps = 44/185 (23%)

Query: 67  WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIA 126
           + VTA HC +           W+A  G                  + V E      +D  
Sbjct: 27  YFVTAGHCTNI-------SANWSASSGG---------------SVVGVREGTSFPTNDYG 64

Query: 127 LLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 186
           +++ +                 +    V+                     K       + 
Sbjct: 65  IVRYTDG--------------SSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVT 110

Query: 187 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
           + +V       +    G       +   + +  GDSGG              GI S  SG
Sbjct: 111 SGTVTAVNVTVNY---GDGPVYNMVRTTACSAGGDSGGAHFA-----GSVALGIHSGSSG 162

Query: 247 YCGVG 251
             G  
Sbjct: 163 CSGTA 167

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 49.6 bits (117), Expect = 1e-07
 Identities = 28/230 (12%), Positives = 60/230 (26%), Gaps = 41/230 (17%)

Query: 37  AWPWQ--VSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGD 94
              +     +QV  P           V++    ++T  H +                L  
Sbjct: 16  NGHYAPVTYIQVEAPTGT---FIASGVVVGKDTLLTNKHVVDA-------THGDPHALKA 65

Query: 95  WDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPV 154
           +     + +         ++ +       D+A++K S     +  G      T ++    
Sbjct: 66  FPSAINQDNYPNGGFTAEQITKYSGEG--DLAIVKFSPNEQNKHIGEVVKPATMSNNAET 123

Query: 155 NPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF 214
              Q    TG+   KP   +     +I                       +L G  +   
Sbjct: 124 QTNQNITVTGYPGDKPVATMWESKGKIT----------------------YLKGEAMQYD 161

Query: 215 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG-VGIRYSHRQPRLIN 263
                G+SG P+     + +  + GI   G        +  +      + 
Sbjct: 162 LSTTGGNSGSPVF----NEKNEVIGIHWGGVPNEFNGAVFINENVRNFLK 207

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 23/196 (11%), Positives = 48/196 (24%), Gaps = 12/196 (6%)

Query: 31  KESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTA 90
            E  R  +P+     V              VLI  + V+T  H       +   P   + 
Sbjct: 34  DEKDRQKYPYNTIGNVFVKGQTS----ATGVLIGKNTVLTNRHIAKF---ANGDPSKVSF 86

Query: 91  VLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDAD 150
                              E   + +E      D+AL++L    +    G +        
Sbjct: 87  RPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGT 146

Query: 151 KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC--G 208
              +    +    G+        +     ++      +         +    G  +    
Sbjct: 147 SNDLKDGDKLELIGYPFDHKVNQMHRSEIELTTLSRGLRYYGFTVPGNS---GSGIFNSN 203

Query: 209 GQLDGFSGACIGDSGG 224
           G+L G   + +     
Sbjct: 204 GELVGIHSSKVSHLDR 219

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 33/200 (16%), Positives = 59/200 (29%), Gaps = 34/200 (17%)

Query: 58  CGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEE 117
              VLI  + +VT  H       +        A   D ++ E      +   E I+    
Sbjct: 50  ATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPY 109

Query: 118 FHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 177
                 D+A++KL         G         D   +    +    G+    P       
Sbjct: 110 GQGL--DLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGY----PYNYSAYS 163

Query: 178 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 237
           L Q ++ + N                      Q  G++    G+SG  +     + +  L
Sbjct: 164 LYQSQIEMFN--------------------DSQYFGYTEV--GNSGSGIF----NLKGEL 197

Query: 238 AGITSFGSGYCG--VGIRYS 255
            GI S   G     +G+ ++
Sbjct: 198 IGIHSGKGGQHNLPIGVFFN 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	436
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	100.0
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	100.0
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	100.0
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	100.0
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	100.0
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	100.0
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	100.0
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	100.0
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	100.0
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	100.0
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	100.0
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	100.0
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	100.0
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	100.0
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	100.0
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	100.0
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	100.0
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	100.0
d1elva1	259	Complement C1S protease, catalytic domain {Human (	100.0
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	100.0
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	100.0
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	100.0
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	100.0
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	100.0
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	100.0
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	100.0
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	100.0
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	100.0
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	100.0
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	100.0
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	100.0
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	100.0
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	100.0
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.94
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	99.94
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	99.94
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	99.92
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	99.91
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1elva1	259	Complement C1S protease, catalytic domain {Human (	99.91
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.9
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	99.9
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	99.9
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	99.89
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	99.89
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.89
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.88
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	99.88
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	99.88
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	99.87
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	99.86
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.62
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	99.6
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	99.47
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	99.47
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	99.47
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.46
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.46
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	99.41
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	99.39
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	99.38
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	99.37
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	99.36
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	99.31
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	99.26
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	99.26
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	99.26
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	99.2
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.19
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.18
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.16
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	99.15
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	99.15
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.14
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	99.13
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	99.1
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	99.1
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	99.08
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	99.07
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	99.06
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	99.02
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	99.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	98.86
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	98.78
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	98.78
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	98.67
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.66
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	98.66
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	98.6
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	98.59
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.53
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	98.53
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	98.36
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	98.25
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	97.8
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	97.78
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	97.73
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	97.72
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	97.37
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	96.34
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	94.86
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	94.27
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	94.08
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	93.56
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	93.18
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	92.44
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	91.96
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	91.18
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	90.33
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	89.76

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-42  Score=310.41  Aligned_cols=234  Identities=33%  Similarity=0.702  Sum_probs=187.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+.....   ..++|+||||+++||||||||+....    ....+.+..+...........+.
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~---~~~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~~~~~~~~~~~~~~~~~~   73 (237)
T d1xx9a_           1 IVGGTASVRGEWPWQVTLHTTSPT---QRHLCGGSIIGNQWILTAAHCFYGVE----SPKILRVYSGILNQSEIKEDTSF   73 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSS---EEEEEEEEEEETTEEEECGGGGTTCS----CGGGEEEEESCSBGGGCCTTCCC
T ss_pred             CCCCEECCCCCCCcEEEEEECCCC---ccEEEEEEEEeCCEEEeCeEeeeccc----CccceeeecccccccccccceEE
Confidence            789999999999999999876432   25789999999999999999997642    33556677776655555556677


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|.+++.||.|+  ...+|||||+|++|+. +...++|||++.... .......+.+.|                    
T Consensus        74 ~~v~~~~~h~~~~~~~~~~diAll~L~~~v~-~~~~~~pi~~~~~~~-~~~~~~~~~~~G--------------------  131 (237)
T d1xx9a_          74 FGVQEIIIHDQYKMAESGYDIALLKLETTVN-YTDSQRPICLPSKGD-RNVIYTDCWVTG--------------------  131 (237)
T ss_dssp             EEEEEEEECTTCSCTTTSCCCEEEEESSCCC-CBTTBCCCBCCCTTC-TTCCCSCEEEEE--------------------
T ss_pred             EEeeEEEEecccccccccceeEEEEeccccc-cccccceEEeccccc-ccccccccEEEE--------------------
Confidence            8999999999997  4789999999999999 677899999877422 222233344444                    


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (237)
T d1xx9a_         132 --------------------------------------------------------------------------------  131 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                 |+.........+.++...+.+
T Consensus       132 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~  152 (237)
T d1xx9a_         132 -----------------------------------------------------------WGYRKLRDKIQNTLQKAKIPL  152 (237)
T ss_dssp             -----------------------------------------------------------SCCSSTTCCCCSBCEEEECCE
T ss_pred             -----------------------------------------------------------eecccccccCCCccEEEEEEE
Confidence                                                                       443333333355678888889


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.++|+..+... .+.+.++|++........|.||+||||++.. +++|+|+||+|++..|+..+.|++||||++|++|
T Consensus       153 ~~~~~C~~~~~~~-~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~-~~~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~W  230 (237)
T d1xx9a_         153 VTNEECQKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDW  230 (237)
T ss_dssp             ECHHHHHHHTTTS-CCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEEESSSSCTTCCEEEECGGGGHHH
T ss_pred             eCHHHHhhhhcCC-CCCCceEEEecCCCCcccccCCccceeEEec-CCEEEEEEEEEeCCCCCCCCCCEEEEEhHHhHhH
Confidence            9999999877553 4688999998777767899999999999985 7999999999999999888889999999999999


Q ss_pred             HHHHHh
Q psy16044        425 IRKQIN  430 (436)
Q Consensus       425 I~~~i~  430 (436)
                      |+++|+
T Consensus       231 I~~~~~  236 (237)
T d1xx9a_         231 ILEKTQ  236 (237)
T ss_dssp             HHHHHC
T ss_pred             HHHHHC
Confidence            999986

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=3.7e-42  Score=309.91  Aligned_cols=234  Identities=35%  Similarity=0.688  Sum_probs=188.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||+++..++|||+|+|+......+  .++|+||||+++||||||||+.....  .....+.+..+...........+.
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~~--~~~C~GtLIs~~~VLTaAhCv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   76 (237)
T d2f91a1           1 IVGGTDATLGEFPYQLSFQETFIGFS--FHFCGASIYNENYAITAGHCVYGDDY--ENPSGLQIVAGELDMSVNEGSEQI   76 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTEE--EEEEEEEEEETTEEEECGGGTTTSCT--TSCCSEEEEESCSBTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCC--cEEEEEEEEeCCEEEECcccccccCC--ccccceeEEeeecccccccCccee
Confidence            78999999999999999987653322  57899999999999999999977532  234556677776666666666788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..|+++++||+|+  ...+|||||+|++++. ++..+.|||++....   ..+..+.++|||                  
T Consensus        77 ~~v~~i~~h~~y~~~~~~~diAll~l~~~v~-~~~~~~~i~~~~~~~---~~~~~~~~~g~g------------------  134 (237)
T d2f91a1          77 ITVSKIILHENFDYNLLDNDISLLKLSGSLT-FNDNVAPIALPEQGH---TATGDVIVTGWG------------------  134 (237)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCBCCCTTC---CCCSEEEEEESC------------------
T ss_pred             eeEEEEEEccccCCCccccceeeeccccccc-cCCceeeeeccccCc---ccccceeecccc------------------
Confidence            9999999999998  4689999999999998 677888888876421   123445555554                  


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (237)
T d2f91a1         135 --------------------------------------------------------------------------------  134 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                   ........++.|+++.+.+
T Consensus       135 -------------------------------------------------------------~~~~~~~~~~~l~~~~~~~  153 (237)
T d2f91a1         135 -------------------------------------------------------------TTSEGGNTPDVLQKVTVPL  153 (237)
T ss_dssp             -------------------------------------------------------------CSSTTCCCCSBCEEEEEEE
T ss_pred             -------------------------------------------------------------ccCCCCcCCchheEEEEEE
Confidence                                                                         3333333356688999999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.++|+..+... .+.+.++|..........|.||+||||++.. +++|+|+||+||+..|+..+.|.+||+|++|++|
T Consensus       154 ~~~~~C~~~~~~~-~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~-~~~~~L~Gi~S~g~~c~~~~~p~v~t~v~~y~~W  231 (237)
T d2f91a1         154 VSDEDCRADYGAD-EILDSMICAGVPEGGKDSCQGDSGGPLAASD-TGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDW  231 (237)
T ss_dssp             ECHHHHHHHHCTT-TSCTTEEEECCTTCCCBCCTTCTTCEEEECT-TSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHH
T ss_pred             eCHHHHhhhccCC-cccCceeEeecCCCccccccCCCCCeEEEec-CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHH
Confidence            9999999887654 4678889998877777899999999999984 7899999999999999988889999999999999


Q ss_pred             HHHHH
Q psy16044        425 IRKQI  429 (436)
Q Consensus       425 I~~~i  429 (436)
                      |++++
T Consensus       232 I~~n~  236 (237)
T d2f91a1         232 IKANA  236 (237)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99875

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-42  Score=313.93  Aligned_cols=244  Identities=32%  Similarity=0.605  Sum_probs=198.9

Q ss_pred             CCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEec
Q psy16044         14 CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLG   93 (436)
Q Consensus        14 CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g   93 (436)
                      ||++...++..+||+||++|..++|||+|+|.+....  ...++|+||||+++||||||||+...      .....+...
T Consensus         1 cg~~~~~~~~~~ri~gG~~a~~~~~Pw~v~i~~~~~~--~~~~~C~G~LIs~~~VLTaAhC~~~~------~~~~~~~~~   72 (251)
T d1pytd_           1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDN--TWRHTCGGTLITPNHVLTAAHCISNT------LTYRVALGK   72 (251)
T ss_dssp             CCCCSSCCCSSSSCCSSCCCCTTSSTTEEEEEEEETT--EEEEEEEEEEEETTEEEECGGGCCTT------CCEEEEESC
T ss_pred             CcCCCCCCCCCCeEECCEECCCCCCCcEEEEEEEeCC--CceeEEeEEEEcCCeEEEeeeccccc------ccceeeeee
Confidence            9988888788999999999999999999999875532  22578999999999999999999763      122223333


Q ss_pred             cccCCccCCceEEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCC
Q psy16044         94 DWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK  171 (436)
Q Consensus        94 ~~~~~~~~~~~~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~  171 (436)
                      ...........+...+..+++||.|+  ...+||||++|.+|+. ++..++||||+..+. ....+..+.+.||+.+...
T Consensus        73 ~~~~~~~~~~~~~~~v~~i~~h~~y~~~~~~~diali~l~~pi~-~~~~~~pi~l~~~~~-~~~~~~~~~~~g~~~~~~~  150 (251)
T d1pytd_          73 NNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVE-LGDTIQVACLPSEGS-LLPQDYPCFVTGWGRLYTN  150 (251)
T ss_dssp             SBTTCSCCSSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCC-CCSSCCCCBCCCTTC-CCCTTCEEEECBCCCSSCC
T ss_pred             eeeecccCCCceEEeEEEEEEeeeecccccCCceeeeecCCCcc-cCceeEEEEeecccc-CCCCceeEEEecCccccCC
Confidence            32233334455778999999999997  4689999999999999 788899999998643 3456788999999998877


Q ss_pred             CCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC-CCCC
Q psy16044        172 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCGV  250 (436)
Q Consensus       172 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~-~C~~  250 (436)
                      +.....++...+.+++...|...+.........++|++.... .+.|.||+||||++. .+++|+|+||+|||.. .|+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~c~~~~~~-~~~c~gd~G~Pl~~~-~~~~~~L~Gi~S~~~~~~c~~  228 (251)
T d1pytd_         151 GPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGV-ISACNGDSGGPLNCQ-ADGQWDVRGIVSFGSGLSCNT  228 (251)
T ss_dssp             SCCCSBCBCCEEECBCHHHHTSTTTTTTTCCTTEEEECCSCS-SCCCCSCTTCEEEEE-SSSSEEEEEEEEECCSSCTTB
T ss_pred             CcccceeceeeccccCHHHHhhhhcccccccCceEEeccCCC-CccccCCCCCceEEe-eCCEEEEEEEEEECCCCCCCC
Confidence            777778888899999999999887666666778999987654 789999999999997 4789999999999875 3543


Q ss_pred             ---CcccccccceecCCccccC
Q psy16044        251 ---GIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       251 ---~~~y~~v~~~~~~~~~~~~  269 (436)
                         +.+|++|..|..||.+++.
T Consensus       229 ~~~p~vyt~v~~y~~WI~~~i~  250 (251)
T d1pytd_         229 FKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             TTBCEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCeEEEEHHHhHHHHHHhcc
Confidence               4689999999999987653

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=307.08  Aligned_cols=235  Identities=37%  Similarity=0.679  Sum_probs=186.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...     ..++|+||||+++||||||||+.+.       ....|.+|...........+.
T Consensus         1 i~~G~~~~~~e~Pw~v~i~~~~-----~~~~C~GtLIs~~~VLTaAhCv~~~-------~~~~v~~g~~~~~~~~~~~~~   68 (240)
T d1autc_           1 LIDGKMTRRGDSPWQVVLLDSK-----KKLACGAVLIHPSWVLTAAHCMDES-------KKLLVRLGEYDLRRWEKWELD   68 (240)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT-----SCEEEEEEEEETTEEEECGGGSSSC-------SCCEEEESCCBTTCCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEEECC-----CCEEEEEEEEeCCEEEECceeccCc-------ccceeecccccccccccccee
Confidence            7899999999999999997643     1689999999999999999998653       446799998887777777788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCC---CCCCCCCCcEEEEecCccCCCCCccccceee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDAD---KRPVNPKQQCVATGWGRVKPKGDLVSKLRQI  181 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~---~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~  181 (436)
                      ..|+++++||.|.  ...+|||||||++|+. ++..|+|+|||...   ......+..+.+.|||........       
T Consensus        69 ~~v~~i~~~~~~~~~~~~~DiAli~L~~~v~-~~~~v~picL~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~-------  140 (240)
T d1autc_          69 LDIKEVFVHPNYSKSTTDNDIALLHLAQPAT-LSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKE-------  140 (240)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCC-CBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSC-------
T ss_pred             eeeeccccceeeeccccccceeEEEeCCccc-CCcccccceeccCcccccccccCCCeEEEEeeccccCCCcc-------
Confidence            9999999999997  5679999999999999 78889999998742   122345566777777753311000       


Q ss_pred             eeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCccccccccee
Q psy16044        182 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRL  261 (436)
Q Consensus       182 ~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~  261 (436)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (240)
T d1autc_         141 --------------------------------------------------------------------------------  140 (240)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEE
Q psy16044        262 INGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  341 (436)
Q Consensus       262 ~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~  341 (436)
                                                                                         ........++...
T Consensus       141 -------------------------------------------------------------------~~~~~~~~~~~~~  153 (240)
T d1autc_         141 -------------------------------------------------------------------AKRNRTFVLNFIK  153 (240)
T ss_dssp             -------------------------------------------------------------------CCSSCSSBCEEEE
T ss_pred             -------------------------------------------------------------------cccccceeeecce
Confidence                                                                               0011134567778


Q ss_pred             EEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCccc
Q psy16044        342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFY  421 (436)
Q Consensus       342 ~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~  421 (436)
                      +++++++.|...+..  ......+|..........|.||+|+||++.. +++|+|+||+||+..|+..+.|.+||||++|
T Consensus       154 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gd~G~pl~~~~-~~~~~l~Gi~s~g~~c~~~~~p~vftrv~~y  230 (240)
T d1autc_         154 IPVVPHNECSEVMSN--MVSENMLCAGILGDRQDACEGDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRY  230 (240)
T ss_dssp             EEEECHHHHHHHCSS--CCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEECGGGT
T ss_pred             eeEEeehhhhhhccc--ccccceeeeccccccCCCcCCccCceeEEcC-CCCEEEEEEEEeCCCCCCCCCCeEEEEHHHH
Confidence            888888889887654  3455666666656667899999999999986 6899999999999999887889999999999


Q ss_pred             HHHHHHHHhh
Q psy16044        422 LPWIRKQINI  431 (436)
Q Consensus       422 ~~WI~~~i~~  431 (436)
                      ++||+++|++
T Consensus       231 ~~WI~~~i~~  240 (240)
T d1autc_         231 LDWIHGHIRD  240 (240)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhCC
Confidence            9999999974

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-41  Score=308.91  Aligned_cols=236  Identities=33%  Similarity=0.657  Sum_probs=181.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..+||||+|+|.+..      .++|+||||+++||||||||+.+....   ........+  .........+.
T Consensus         1 i~gG~~~~~~e~Pw~v~I~~~~------~~~C~GtLIs~~~VLTaAhCv~~~~~~---~~~~~~~~~--~~~~~~~~~~~   69 (255)
T d1z8ga1           1 IVGGRDTSLGRWPWQVSLRYDG------AHLCGGSLLSGDWVLTAAHCFPERNRV---LSRWRVFAG--AVAQASPHGLQ   69 (255)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEESSSSEEEECGGGCCGGGCC---GGGEEEEES--CSBTTCTTSEE
T ss_pred             CCCCEECCCCCcCcEEEEEECC------cEEEEEEEEeCCEEEECceecCCCCCc---cceeeEeee--eecccCCccEE
Confidence            7899999999999999998653      688999999999999999999764211   122222222  22223334577


Q ss_pred             EeeeEEEeCCCCC--------CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccc
Q psy16044        107 IPVERIRVHEEFH--------NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKL  178 (436)
Q Consensus       107 ~~v~~i~~hp~y~--------~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l  178 (436)
                      ..+.++..||.+.        ...||||||||++|+. ++.+++|+||+..... ...+..+.                 
T Consensus        70 ~~v~~~~~h~~~~~~~~~~~~~~~~DiAll~L~~~v~-~~~~~~p~~l~~~~~~-~~~~~~~~-----------------  130 (255)
T d1z8ga1          70 LGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLP-LTEYIQPVCLPAAGQA-LVDGKICT-----------------  130 (255)
T ss_dssp             ECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCC-CCSSCCCCBCCCTTCC-CCTTCEEE-----------------
T ss_pred             EEEEEEEEEeeeccccccccCCccccEEEEecCCccc-cCcccccceecccCcc-cCCCcEEE-----------------
Confidence            8899999999853        3568999999999998 6788888888764221 22333444                 


Q ss_pred             eeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCccccccc
Q psy16044        179 RQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQ  258 (436)
Q Consensus       179 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~  258 (436)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (255)
T d1z8ga1         131 --------------------------------------------------------------------------------  130 (255)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccce
Q psy16044        259 PRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLR  338 (436)
Q Consensus       259 ~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~  338 (436)
                                                                                    +.||+...........++
T Consensus       131 --------------------------------------------------------------~~G~~~~~~~~~~~~~l~  148 (255)
T d1z8ga1         131 --------------------------------------------------------------VTGWGNTQYYGQQAGVLQ  148 (255)
T ss_dssp             --------------------------------------------------------------EEESSBSSTTSCBCSBCE
T ss_pred             --------------------------------------------------------------eeccccccCCCcccceeE
Confidence                                                                          444444433334456788


Q ss_pred             EEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEe---cCCcEEEEEEEEecCCCCCCCCCeEE
Q psy16044        339 QIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL---KDGRWYLAGITSFGSGCAKSGYPDVY  415 (436)
Q Consensus       339 ~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~---~~~~~~l~Gi~S~~~~c~~~~~p~v~  415 (436)
                      ...+++++.+.|+..+.....+.+.++|.....+....|.||+||||++..   ..++|+|+||+||+.+|+....|++|
T Consensus       149 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~~~~~p~vf  228 (255)
T d1z8ga1         149 EARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVY  228 (255)
T ss_dssp             EEEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEE
T ss_pred             EEEEEEeCHHHhhhhhccCccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEECCCCCCCCCCEEE
Confidence            999999999999887655556788888887777767899999999999986   35689999999999999988889999


Q ss_pred             EeCcccHHHHHHHHhhhhh
Q psy16044        416 TKLSFYLPWIRKQINIAVD  434 (436)
Q Consensus       416 t~V~~~~~WI~~~i~~~~~  434 (436)
                      |||++|++||+++|+...+
T Consensus       229 t~V~~y~~WI~~~i~~~~~  247 (255)
T d1z8ga1         229 TKVSDFREWIFQAIKTHSE  247 (255)
T ss_dssp             EEGGGGHHHHHHHHHHTTT
T ss_pred             EEHHHhHHHHHHHHHHcCC
Confidence            9999999999999987654

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.5e-42  Score=306.25  Aligned_cols=224  Identities=28%  Similarity=0.504  Sum_probs=192.8

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|.......+  .++|+||||+++||||||||+..         ...|++|...........+.
T Consensus         1 I~gG~~a~~ge~P~~v~i~~~~~~~~--~~~C~GtLI~~~~VLTaAhC~~~---------~~~v~~G~~~~~~~~~~~~~   69 (227)
T d1fi8a_           1 IIGGHEAKPHSRPYMAYLQIMDEYSG--SKKCGGFLIREDFVLTAAHCSGS---------KIQVTLGAHNIKEQEKMQQI   69 (227)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECTTC---CCEEEEEEEETTEEEECGGGCCS---------EEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEeCCCC--ceEEEEEEEeCCEEEEecccccc---------cceeeeeecccccCCCCceE
Confidence            78999999999999999987654332  67899999999999999999854         34789998887776677788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..|.+++.||.|+  ...+|||||+|++|+. ++.+++|||++... .....+..+++.|||........+..++...+.
T Consensus        70 ~~v~~i~~~~~~~~~~~~~diall~l~~~i~-~~~~v~picl~~~~-~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~  147 (227)
T d1fi8a_          70 IPVVKIIPHPAYNSKTISNDIMLLKLKSKAK-RSSAVKPLNLPRRN-VKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELT  147 (227)
T ss_dssp             EEEEEEEECTTCBTTTTBSCCEEEEESSCCC-CCSSCCCCCCCCTT-CCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEE
T ss_pred             EEEEEEEecccccCccccchhhhhhccCcee-eeeeEEEEEecccC-cccCCCCEEEEEeeccccCCCCCCceeeEEEEE
Confidence            8999999999997  5689999999999999 78899999999864 345578899999999988777778889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.+.|...+.... .....+|+.......+.|.||+||||+++     ++|+||+|||..+|+.+.+|++|.++.+||
T Consensus       148 ~~~~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~c~gdsGgPl~~~-----~~l~Gi~S~g~~~~~~p~vyt~v~~y~~WI  221 (227)
T d1fi8a_         148 VQEDQKCESYLKNYF-DKANEICAGDPKIKRASFRGDSGGPLVCK-----KVAAGIVSYGQNDGSTPRAFTKVSTFLSWI  221 (227)
T ss_dssp             BCCHHHHHHHTTTTC-CTTTEEEESCTTSCCBCCTTCTTSEEEET-----TEEEEEEEEEETTCCSCEEEEEGGGGHHHH
T ss_pred             EEEchhhhhhhhccc-ccceeeeeeeccccCCCcCCCcCCEEEEC-----CEEEEEEEEcCCCCCCCeEEEEHHHHHHHH
Confidence            999999998876543 34567888777777889999999999984     489999999999888889999999999999


Q ss_pred             ccccC
Q psy16044        265 KESIR  269 (436)
Q Consensus       265 ~~~~~  269 (436)
                      ++++.
T Consensus       222 ~~~i~  226 (227)
T d1fi8a_         222 KKTMK  226 (227)
T ss_dssp             HHHHC
T ss_pred             HHHHc
Confidence            98765

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-41  Score=305.84  Aligned_cols=233  Identities=34%  Similarity=0.576  Sum_probs=194.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCC-CCCCcceEEEeccccCCcc-CCce
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFS-LPIPELWTAVLGDWDRTEE-EKSE  104 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~-~~~~~~~~v~~g~~~~~~~-~~~~  104 (436)
                      |+||++|.+++|||+|+|+....     .++|+||||+++||||||||+.+.... ......+.+..+..+.... ....
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~-----~~~C~GtlIs~~~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (241)
T d1eaxa_           1 VVGGTDADEGEWPWQVSLHALGQ-----GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGV   75 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTT-----EEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTTSTTC
T ss_pred             CCCCEECCCCCCCcEEEEEECCC-----CEEEEEEEEcCCEEEECeeeeecCCceeeeccceeeEEeeeeecccccCCCc
Confidence            78999999999999999986532     578999999999999999999775332 2233456777776554433 2456


Q ss_pred             EEEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        105 VRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       105 ~~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.+.|.++++||+|+  ...+|||||||+.|+. +...++|+|||... .....+..+...||+...........|+...
T Consensus        76 ~~~~v~~i~~Hp~y~~~~~~~diAll~L~~~~~-~~~~~~~i~l~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~  153 (241)
T d1eaxa_          76 QERRLKRIISHPFFNDFTFDYDIALLELEKPAE-YSSMVRPICLPDAS-HVFPAGKAIWVTGWGHTQYGGTGALILQKGE  153 (241)
T ss_dssp             EEEEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCBCCCTT-CCCCTTCEEEEEESSBSSTTSCBCSBCEEEE
T ss_pred             EEEEEEEEEECCcccccccCCcccccccCCcee-cCcccceeeccccc-cccccceeEEEeccCCccccccccccceEEE
Confidence            789999999999997  4689999999999999 78889999999853 3345678899999998887777777899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccce
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPR  260 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~  260 (436)
                      +++++.+.|+..+....  ...++|++...+..+.|.||+||||++...+|+|+|+||+|||.+||.  .+.+|++|.+|
T Consensus       154 ~~~~~~~~C~~~~~~~~--~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~~L~Gi~s~~~~c~~~~~p~vft~V~~y  231 (241)
T d1eaxa_         154 IRVINQTTCENLLPQQI--TPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLF  231 (241)
T ss_dssp             EEECCHHHHHHHSTTTC--CTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGG
T ss_pred             EEEeCHHHHHHHhCccc--cCccceeccCCCCcccccCcccceeEEEcCCCeEEEEEEEEECCCCCCCCCCEEEEEHHHH
Confidence            99999999999987644  458999988887789999999999999877899999999999998664  34689999999


Q ss_pred             ecCCcccc
Q psy16044        261 LINGKESI  268 (436)
Q Consensus       261 ~~~~~~~~  268 (436)
                      ..||.+.+
T Consensus       232 ~~WI~~~~  239 (241)
T d1eaxa_         232 RDWIKENT  239 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-41  Score=304.34  Aligned_cols=231  Identities=29%  Similarity=0.602  Sum_probs=181.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+....     .++|+||||+++||||||||+.+.       ....+..............+.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~-----~~~C~GtlIs~~~VLTaAhCv~~~-------~~~~~~~~~~~~~~~~~~~~~   68 (233)
T d2p3ub1           1 IVGGQECKDGECPWQALLINEEN-----EGFCGGTILSEFYILTAAHCLYQA-------KRFKVRVGDRNTEQEEGGEAV   68 (233)
T ss_dssp             CBSSEECCTTSCTTEEEEECTTS-----CEEEEEEECSSSEEEECGGGGGSC-------SSCEEEESCSBTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCcEEEEEecCC-----CeEEEEEEEeCCEEEECceecccc-------cccccccccccccccCCCcee
Confidence            78999999999999999975431     688999999999999999999763       223444444344444445677


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+.+++.||+|+  ...+|||||+|++|+. ++.+++|+|||.......                              
T Consensus        69 ~~~~~i~~h~~~~~~~~~~diAll~L~~pv~-~~~~v~pi~l~~~~~~~~------------------------------  117 (233)
T d2p3ub1          69 HEVEVVIKHNRFTKETYDFDIAVLRLKTPIT-FRMNVAPACLPERDWAES------------------------------  117 (233)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCBCCCHHHHHH------------------------------
T ss_pred             ecceeEEEeecccccccccceeeeeccccee-ecccccccccCCcccccc------------------------------
Confidence            8899999999998  4678999999999999 788899999987310000                              


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (233)
T d2p3ub1         118 --------------------------------------------------------------------------------  117 (233)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                     .......+.+.||+...........++...+.+
T Consensus       118 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (233)
T d2p3ub1         118 -----------------------------------------------TLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPY  150 (233)
T ss_dssp             -----------------------------------------------HTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEB
T ss_pred             -----------------------------------------------cccccceEEEecCCccccCCCcccccccccccc
Confidence                                                           001223345555555444444456678888999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.+.|...+..  .+..+++|+.........|.||+||||++.. +++|+|+||+||+..|+..+.|++||||++|++|
T Consensus       151 ~~~~~C~~~~~~--~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~-~~~~~L~Gv~s~g~~c~~~~~p~vyt~v~~y~~W  227 (233)
T d2p3ub1         151 VDRNSCKLSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRF-KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKW  227 (233)
T ss_dssp             CCHHHHHHHCSS--CCCTTEEEESCSSSSCBCCTTTTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHH
T ss_pred             ccchhhhcccCc--eEeecceeeecccccCCCcCCCcccccEEec-CCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHH
Confidence            999999988765  4567888887777767899999999999986 7899999999999999988889999999999999


Q ss_pred             HHHHHh
Q psy16044        425 IRKQIN  430 (436)
Q Consensus       425 I~~~i~  430 (436)
                      |+++|+
T Consensus       228 I~~~i~  233 (233)
T d2p3ub1         228 IDRSMK  233 (233)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            999985

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.3e-41  Score=298.95  Aligned_cols=221  Identities=34%  Similarity=0.616  Sum_probs=174.8

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+..       .++|+||||+++||||||||+....         ..................
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~-------~~~C~GtLIs~~~VLTaAhCv~~~~---------~~~~~~~~~~~~~~~~~~   64 (223)
T d1j16a_           1 IVGGYTCQENSVPYQVSLNSG-------YHFCGGSLINDQWVVSAAHCYKSRI---------QVRLGEHNINVLEGNEQF   64 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEESS-------SEEEEEEEEETTEEEECGGGCCSSC---------EEEESCSBTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCcEEEEeCC-------CEEEEEEEEcCCEEEeCHHHCCCcC---------Cceeeeeeecccccccee
Confidence            689999999999999999532       6899999999999999999997631         111222222333334567


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+..++.||.|+  ...+|||||+|++++. ++.+++|||||...   ...+..+.+.|||.+...             
T Consensus        65 ~~~~~~~~hp~y~~~~~~~diAll~L~~~v~-~~~~~~picL~~~~---~~~~~~~~~~g~g~~~~~-------------  127 (223)
T d1j16a_          65 VNAAKIIKHPNFDRETYNNDIMLIKLSSPVK-LNARVATVALPSSC---APAGTQCLISGWGNTLSS-------------  127 (223)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCC-CBTTBCCCBCCSSC---CCTTCEEEEEESSCCCSS-------------
T ss_pred             eeeeeEEecCCCCccccceeEEEEEecCccc-cceeEEEEecCCcC---CCCCCEEEEEeeeeeeCC-------------
Confidence            7889999999997  4678999999999999 77889999998642   235566777777643200             


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (223)
T d1j16a_         128 --------------------------------------------------------------------------------  127 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                       ....+..|+...+.+
T Consensus       128 -----------------------------------------------------------------~~~~~~~l~~~~~~~  142 (223)
T d1j16a_         128 -----------------------------------------------------------------GVNEPDLLQCLDAPL  142 (223)
T ss_dssp             -----------------------------------------------------------------SCCCCSBCEEEEEEE
T ss_pred             -----------------------------------------------------------------CccCcceeeEEEEEE
Confidence                                                                             011245678889999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.++|+..+..  .+.++++|+....+....|.||+|+||+++     ++|+||+||+..|+..+.|.+||||++|++|
T Consensus       143 ~~~~~C~~~~~~--~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~-----~~L~Gi~s~~~~~~~~~~p~vft~v~~~~~W  215 (223)
T d1j16a_         143 LPQADCEASSSF--IITDNMVCVGFLEGGKDACQGDSGGPVVCN-----GELQGIVSWGYGCALPDNPGVYTKVCNYVDW  215 (223)
T ss_dssp             ECHHHHHSSSSC--CCCTTEEEESCTTCSCBCCTTCTTCEEEET-----TEEEEEEEECSSSSCTTCCEEEEEGGGGHHH
T ss_pred             EEhhHhhccccc--eeCCCceEEecCCCCCcccCCccCCcEEEe-----eEEEEEEEEccCCCCCCCCEEEEEhHHhHHH
Confidence            999999987764  468899999877777789999999999984     2699999999999988889999999999999


Q ss_pred             HHHHHhhh
Q psy16044        425 IRKQINIA  432 (436)
Q Consensus       425 I~~~i~~~  432 (436)
                      |+++|+.+
T Consensus       216 I~~~i~~n  223 (223)
T d1j16a_         216 IQDTIAAN  223 (223)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999864

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.7e-40  Score=299.55  Aligned_cols=235  Identities=35%  Similarity=0.694  Sum_probs=183.9

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|.|.....  +...++|+||||+++||||||||+...       ....+.++...........+.
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~--~~~~~~C~GtLIs~~~VLTaAhCv~~~-------~~~~v~~~~~~~~~~~~~~~~   71 (241)
T d1brup_           1 VVGGEDARPNSWPWQVSLQYDSS--GQWRHTCGGTLVDQSWVLTAAHCISSS-------RTYRVVLGRHSLSTNEPGSLA   71 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEET--TEEEEEEEEEEEETTEEEECGGGCCTT-------SCEEEEESCSBSSSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEEcCC--CcceEEeEEEEEeCCEEEECeEeeecc-------cccceeeeccceeccCCCccc
Confidence            78999999999999999987642  222578999999999999999999763       334566666655555566688


Q ss_pred             EeeeEEEeCCCCC----CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~----~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.|..+++||.|+    ...+|||||+|+.++. ++..++|+|++..+. ....+..+.+.|||                
T Consensus        72 ~~v~~~~~~~~~~~~~~~~d~~iall~l~~~~~-~~~~~~pi~~~~~~~-~~~~~~~~~~~g~g----------------  133 (241)
T d1brup_          72 VKVSKLVVHQDWNSNQLSNGNDIALLKLASPVS-LTDKIQLGCLPAAGT-ILPNNYVCYVTGWG----------------  133 (241)
T ss_dssp             EEEEEEEECTTCCTTCGGGCCCCEEEEESSCCC-CCSSCCCCBCCCTTC-CCCTTCEEEEEESC----------------
T ss_pred             cceeeeEEEeeeeeccccCCceEEEEecccccc-cccceeeeeeccccc-cCCCceeEEEEeee----------------
Confidence            8999999999996    2467899999999998 678899999877532 22344445555554                


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceec
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLI  262 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~  262 (436)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (241)
T d1brup_         134 --------------------------------------------------------------------------------  133 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEE
Q psy16044        263 NGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  342 (436)
Q Consensus       263 ~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~  342 (436)
                                                                                     ........+..++.+.+
T Consensus       134 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~  150 (241)
T d1brup_         134 ---------------------------------------------------------------RLQTNGASPDILQQGQL  150 (241)
T ss_dssp             ---------------------------------------------------------------CSSTTSCCCSBCEEEEE
T ss_pred             ---------------------------------------------------------------ccCCCCcCCCcceEEEE
Confidence                                                                           33332333556788999


Q ss_pred             EeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC--CCCCCCCeEEEeCcc
Q psy16044        343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG--CAKSGYPDVYTKLSF  420 (436)
Q Consensus       343 ~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~--c~~~~~p~v~t~V~~  420 (436)
                      ..++.++|++...........++|+.. .+..+.|.||+||||++..++++|+|+||+|||..  |+..+.|++||||++
T Consensus       151 ~~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~C~gdsGgPl~~~~~~~~~~L~Gi~S~g~~~~c~~~~~p~vyt~v~~  229 (241)
T d1brup_         151 LVVDYATCSKPGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSN  229 (241)
T ss_dssp             EEECHHHHTSTTTTGGGCCTTEEEECC-SSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGG
T ss_pred             EEeCHHHhCccccccccccccceeecC-CCCccccCCCcccceEEEcCCCCEEEEEEEEECCCCCCCCCCCCEEEEEHHH
Confidence            999999998876555556777778765 44468999999999999877889999999999875  566678999999999


Q ss_pred             cHHHHHHHHhhh
Q psy16044        421 YLPWIRKQINIA  432 (436)
Q Consensus       421 ~~~WI~~~i~~~  432 (436)
                      |++||+++|+.+
T Consensus       230 ~~~WI~~~i~~~  241 (241)
T d1brup_         230 YIDWINSVIANN  241 (241)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999863

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=9e-41  Score=297.72  Aligned_cols=219  Identities=32%  Similarity=0.605  Sum_probs=170.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|++++|||+|+|...       .++|+||||+++||||||||+.+.       ....+..+  ...........
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~-------~~~C~GtLIs~~~VLTAAhCv~~~-------~~~~~~~~--~~~~~~~~~~~   64 (222)
T d1hj8a_           1 IVGGYECKAYSQPHQVSLNSG-------YHFCGGSLVNENWVVSAAHCYKSR-------VEVRLGEH--NIKVTEGSEQF   64 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEESS-------SEEEEEEEEETTEEEECGGGCCSS-------CEEEESCS--BTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCeEEEEECC-------CEEEEEEEeeCCEEEeCceecccc-------cCcceeec--cccccCCcccc
Confidence            789999999999999999421       578999999999999999999763       12222222  22222333455


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+.+++.||.|.  ...+|||||+|++|+. ++..++|||||...   ...+..+.+.|||.                 
T Consensus        65 ~~~~~~~~~~~~~~~~~~~diALl~l~~~v~-~~~~~~picl~~~~---~~~~~~~~~~g~~~-----------------  123 (222)
T d1hj8a_          65 ISSSRVIRHPNYSSYNIDNDIMLIKLSKPAT-LNTYVQPVALPTSC---APAGTMCTVSGWGN-----------------  123 (222)
T ss_dssp             EEEEEEEECTTCBTTTTBSCCEEEEESSCCC-CSSSCCCCBCCSSC---CCTTCEEEEEESSC-----------------
T ss_pred             ccceEEEecccccccccCCcEEEEeccccee-eeceeEEEECCCcC---CCCCceEEEEeccc-----------------
Confidence            6677788898886  4579999999999999 67789999998632   22345555566553                 


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (222)
T d1hj8a_         124 --------------------------------------------------------------------------------  123 (222)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                    ..........|+...+.+
T Consensus       124 --------------------------------------------------------------~~~~~~~~~~l~~~~~~~  141 (222)
T d1hj8a_         124 --------------------------------------------------------------TMSSTADSNKLQCLNIPI  141 (222)
T ss_dssp             --------------------------------------------------------------CCCSSCCTTBCEEEEEEB
T ss_pred             --------------------------------------------------------------cccccccccccEEEEEEE
Confidence                                                                          222222345688999999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.++|+..+..  .+.+.+||++...+....|.||+||||+++.     +|+||+||+.+|+..+.|.+||||++|++|
T Consensus       142 ~~~~~C~~~~~~--~~~~~~~C~~~~~~~~~~c~gdsGgPl~~~~-----~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~W  214 (222)
T d1hj8a_         142 LSYSDCNNSYPG--MITNAMFCAGYLEGGKDSCQGDSGGPVVCNG-----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDW  214 (222)
T ss_dssp             CCHHHHHHHSTT--CCCTTEEEESCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSCTTCCEEEEEGGGGHHH
T ss_pred             eCHHHHhhhccc--ccccceEEEccCCCCcccccCCcccEEEECC-----EEEEEEEEecCCCCCCCCEEEEEHHHHHHH
Confidence            999999998876  5789999998877767899999999999842     599999999999887889999999999999


Q ss_pred             HHHHHhh
Q psy16044        425 IRKQINI  431 (436)
Q Consensus       425 I~~~i~~  431 (436)
                      |+++|+.
T Consensus       215 I~~~i~~  221 (222)
T d1hj8a_         215 LTSTMAS  221 (222)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9999974

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-41  Score=303.02  Aligned_cols=231  Identities=28%  Similarity=0.544  Sum_probs=175.3

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+.        .++|+||||+++||||||||+.+..   .....+.|..|..+...  ...+.
T Consensus         1 i~gG~~~~~g~~Pw~v~i~~--------~~~C~GtLIs~~~VLTaAhCv~~~~---~~~~~~~v~~~~~~~~~--~~~~~   67 (242)
T d1q3xa1           1 IYGGQKAKPGDFPWQVLILG--------GTTAAGALLYDNWVLTAAHAVYEQK---HDASALDIRMGTLKRLS--PHYTQ   67 (242)
T ss_dssp             CBSCEECCTTSSTTEEEECS--------SSSEEEEEETTTEEEECHHHHHHHH---TTTCCCEEEESCSBTTC--SCSEE
T ss_pred             CCCCEECCCCCcCcEEEEcC--------CCEEEEEEEcCCEEEEChhhccCCC---CCcceEEEEeeeeeecc--ccccc
Confidence            78999999999999999963        4679999999999999999996632   12455677787655443  33466


Q ss_pred             EeeeEEEeCCCCCC---CCCceeEEEeCCCCCCCCCceeeeeecCCCCC-CCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFHN---YHHDIALLKLSRPTSARDKGVRAVCLTDADKR-PVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~~---~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~-~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      ..+.++++||+|+.   ..||||||||++|+. ++.++.|+|++..... ....+.                        
T Consensus        68 ~~v~~i~~hp~y~~~~~~~~DiAll~L~~~~~-~~~~v~pic~~~~~~~~~~~~~~------------------------  122 (242)
T d1q3xa1          68 AWSEAVFIHEGYTHDAGFDNDIALIKLNNKVV-INSNITPICLPRKEAESFMRTDD------------------------  122 (242)
T ss_dssp             EEEEEEEECTTCCTTSCCTTCCEEEEESSCCC-CBTTBCCCBCCCGGGGGGSSTTC------------------------
T ss_pred             cceeeeEEeeccccccccCccccccccCCCcc-ccccEEEEeccccccccccccce------------------------
Confidence            78999999999972   578999999999999 7888999999774211 111122                        


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceec
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLI  262 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~  262 (436)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (242)
T d1q3xa1         123 --------------------------------------------------------------------------------  122 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEE
Q psy16044        263 NGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  342 (436)
Q Consensus       263 ~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~  342 (436)
                                                                             .+...||+....+ ..+..|+.+.+
T Consensus       123 -------------------------------------------------------~~~~~g~~~~~~~-~~~~~l~~~~~  146 (242)
T d1q3xa1         123 -------------------------------------------------------IGTASGWGLTQRG-FLARNLMYVDI  146 (242)
T ss_dssp             -------------------------------------------------------EEEEEESSCCTTS-SCCSBCEEEEE
T ss_pred             -------------------------------------------------------eeeeeeccccccC-ccccceeeeec
Confidence                                                                   2333444433221 22455677777


Q ss_pred             EeeCccccccccCCC----ccCCCCceecccCCCCCCCccCCCCceeeeEe-cCCcEEEEEEEEecC-CCCCCCCCeEEE
Q psy16044        343 PLHNISVCRDKYGDS----VELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGS-GCAKSGYPDVYT  416 (436)
Q Consensus       343 ~~~~~~~C~~~~~~~----~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~~l~Gi~S~~~-~c~~~~~p~v~t  416 (436)
                      ++++.++|++.+...    ..+.+.++|+.........|.||+||||++.. ..++|+|+||+|||. .|+....|++||
T Consensus       147 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~~~l~Gi~S~g~~~c~~~~~p~vft  226 (242)
T d1q3xa1         147 PIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYT  226 (242)
T ss_dssp             EEECHHHHHHHTSSTTSCTTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEECCSSTTCTTCCEEEE
T ss_pred             cccCHHHHHhhhhcccccCceeccceeeeeccCCCccccccccccceEEeeCCCCeEEEEEEEEeCCCCCCCCCCCEEEE
Confidence            777777776655321    23566788887777777899999999999976 457999999999986 588878899999


Q ss_pred             eCcccHHHHHHHHhh
Q psy16044        417 KLSFYLPWIRKQINI  431 (436)
Q Consensus       417 ~V~~~~~WI~~~i~~  431 (436)
                      ||++|++||+++|++
T Consensus       227 ~v~~~~~WI~~~v~~  241 (242)
T d1q3xa1         227 KVINYIPWIENIISD  241 (242)
T ss_dssp             EGGGGHHHHHHHHHH
T ss_pred             EHHHhHHHHHHHHHc
Confidence            999999999999984

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-41  Score=301.62  Aligned_cols=223  Identities=29%  Similarity=0.479  Sum_probs=184.8

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...        ...+.++...........+.
T Consensus         1 ivgG~~a~~~e~Pw~v~i~~~~------~~~C~GtLIs~~~VLTaAhCv~~~--------~~~~~~~~~~~~~~~~~~~~   66 (232)
T d1orfa_           1 IIGGNEVTPHSRPYMVLLSLDR------KTICAGALIAKDWVLTAAHCNLNK--------RSQVILGAHSITREEPTKQI   66 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEECSS------SCEEEEEEEETTEEEECTTCCCCT--------TCEEEESCSBSSSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------CEEEEEEEecCCEEEEChhhcCCC--------Ccceeeeeeecccccccccc
Confidence            7899999999999999997643      688999999999999999999763        12345555555555556677


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+..++.||+|.  +..+|||||+|++|+. ++..++|+|+|.... ....+..+.++|||.+...+..+..|+.+.+.
T Consensus        67 ~~~~~i~~hp~y~~~~~~~diAll~l~~~~~-~~~~~~~i~l~~~~~-~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~  144 (232)
T d1orfa_          67 MLVKKEFPYPCYDPATREGDLKLLQLTEKAK-INKYVTILHLPKKGD-DVKPGTMCQVAGWGRTHNSASWSDTLREVEIT  144 (232)
T ss_dssp             ECEEEEEECTTCCTTTCTTCCEEEEESSCCC-CSSSSCCCCCCSSCC-CCCTTCEEEEEESSCSSSSSCCCSBCEEEEEE
T ss_pred             ceEEEEEecccccccccCcceeEeeecccee-eeeeEeeeeeccccc-ccccCceeeeccccccCCcccCChhheEEEee
Confidence            8899999999997  5689999999999999 788899999997643 45568899999999998877778889999999


Q ss_pred             ccchhhhhhhcCC--CcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC-CCCC---Cccccccc
Q psy16044        185 LHNISVCRDKYGD--SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCGV---GIRYSHRQ  258 (436)
Q Consensus       185 ~~~~~~C~~~~~~--~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~-~C~~---~~~y~~v~  258 (436)
                      +++.++|+..+..  .....++++|++...+..+.|.||+||||+++     |+|+||+|||.. .|+.   +.+|++|.
T Consensus       145 ~~~~~~C~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~-----~~l~GI~S~g~~~~c~~~~~p~vyt~Vs  219 (232)
T d1orfa_         145 IIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE-----GVFRGVTSFGLENKCGDPRGPGVYILLS  219 (232)
T ss_dssp             EECHHHHTSTTTTTTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEET-----TEEEEEEEECCTTCTTCTTSCEEEEECC
T ss_pred             cCCHHHHhhhhhcccCccccCceEEeccCCCCcccccccCCCeEEEc-----CEEEEEEEEECCCCCCCCCCCcEEEEee
Confidence            9999999876532  23356789999988887899999999999985     379999999865 3744   56899996


Q ss_pred             -ceecCCccccCC
Q psy16044        259 -PRLINGKESIRG  270 (436)
Q Consensus       259 -~~~~~~~~~~~~  270 (436)
                       .|++||.+++.+
T Consensus       220 ~~y~~WI~~~i~g  232 (232)
T d1orfa_         220 KKHLNWIIMTIKG  232 (232)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCC
Confidence             789999887653

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-41  Score=301.26  Aligned_cols=229  Identities=28%  Similarity=0.567  Sum_probs=191.3

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCc-cCCceE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTE-EEKSEV  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~-~~~~~~  105 (436)
                      |+||++|..++|||+|+|+...      .++|+||||+++||||||||+....   .....+.+..+...... .....+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~------~~~C~GtLIs~~~VLTaAhCv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   71 (235)
T d1ekbb_           1 IVGGSDSREGAWPWVVALYFDD------QQVCGASLVSRDWLVSAAHCVYGRN---MEPSKWKAVLGLHMASNLTSPQIE   71 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEECSSSEEEECHHHHTTCC---SSGGGEEEEESCCBTTCCCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------CEEEEEEEEcCCEEEEChhhccCCC---CCccceeeeecccccccccCccee
Confidence            7899999999999999998653      6789999999999999999997642   22355667777655433 334557


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      .+.+.++++||.|+  ...+|||||+|++|+. ++..++|||||... .....+..+.++|||.....+.....|+...+
T Consensus        72 ~~~v~~~~~hp~~~~~~~~~diAli~L~~~v~-~~~~~~picLp~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~  149 (235)
T d1ekbb_          72 TRLIDQIVINPHYNKRRKNNDIAMMHLEMKVN-YTDYIQPICLPEEN-QVFPPGRICSIAGWGALIYQGSTADVLQEADV  149 (235)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCC-CCSSCCCCBCCCTT-CCCCTTCEEEEEESSBSSTTSCBCSBCEEEEE
T ss_pred             EeeeeeeeecccccccCccchhhhhhhcCcee-cCCceeeEECCCcc-ccCCcceEEEEecccccccCCcccccceeeEE
Confidence            88899999999997  4689999999999999 78889999999864 34457889999999998877777778999999


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC--Cccccccccee
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV--GIRYSHRQPRL  261 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~--~~~y~~v~~~~  261 (436)
                      .+.+.+.|...+... ...+.++|+....+..+.|.||+||||++.. +++|+|+||+|||..+|..  +.+|++|.+|.
T Consensus       150 ~~~~~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~-~~~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~  227 (235)
T d1ekbb_         150 PLLSNEKCQQQMPEY-NITENMVCAGYEAGGVDSCQGDSGGPLMCQE-NNRWLLAGVTSFGYQCALPNRPGVYARVPRFT  227 (235)
T ss_dssp             EBCCHHHHHHHCTTS-CCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGTH
T ss_pred             EEecHHHhccccccc-ccCcccEEEEcCCCCcccccCCCCCccEEcc-CCEEEEEEEEEecCCCCCCCCCEEEEEHHHHH
Confidence            999999998776543 3456899998888778899999999999984 7899999999999986643  46899999999


Q ss_pred             cCCcccc
Q psy16044        262 INGKESI  268 (436)
Q Consensus       262 ~~~~~~~  268 (436)
                      .||++.+
T Consensus       228 ~WI~~~i  234 (235)
T d1ekbb_         228 EWIQSFL  234 (235)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHhh
Confidence            9998765

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-40  Score=297.55  Aligned_cols=242  Identities=32%  Similarity=0.613  Sum_probs=178.6

Q ss_pred             CCCCCCccCCCC-CCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEE
Q psy16044         12 RDCGVGIRYSHR-QPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTA   90 (436)
Q Consensus        12 ~~CG~~~~~~~~-~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v   90 (436)
                      .+||++...+.. ..||+||.+|.+++|||+|+|+....     .++|+||||+++||||||||+....    .......
T Consensus         2 ~~cg~~~~~~~~~~~ri~gG~~a~~~~~Pw~v~i~~~~~-----~~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~~   72 (247)
T d1rjxb_           2 FDCGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFG-----MHFCGGTLISPEWVLTAAHCLEKSP----RPSSYKV   72 (247)
T ss_dssp             CSTTCCSSCCCCCCTTSTTCEECCTTSSTTEEEEEETTC-----CEEEEEEEEETTEEEEEGGGGTTCS----CGGGEEE
T ss_pred             CCCCCCCcCCCCCCCeEECCEECCCCCCCcEEEEEECCC-----CEEEEEEEEeCCEEEeeeEEEEecc----CCcccee
Confidence            479998887744 66999999999999999999976431     6799999999999999999997642    2233344


Q ss_pred             EeccccCCccCCceEEEeeeEEEeCCCC--CCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCcc
Q psy16044         91 VLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRV  168 (436)
Q Consensus        91 ~~g~~~~~~~~~~~~~~~v~~i~~hp~y--~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~  168 (436)
                      ..+...........+      .+.|+.|  ....+||||++|++++. ++..+.|+||+... ........++..|||  
T Consensus        73 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~DiAl~~L~~~~~-~~~~~~p~~l~~~~-~~~~~~~~~~~~g~~--  142 (247)
T d1rjxb_          73 ILGAHQEVNLEPHVQ------EIEVSRLFLEPTRKDIALLKLSSPAV-ITDKVIPACLPSPN-YVVADRTECFITGWG--  142 (247)
T ss_dssp             EESCCBSSSCCTTCE------EEEEEEEEECSSSCCEEEEEESSCCC-CCSSCCCCBCCCTT-CCCCTTCEEEEEECC--
T ss_pred             eccccccccccceee------EEeeccccCCCccchhhhhhhhcccc-cccccccccccccc-cccCCCceeeecccc--
Confidence            444333333222222      2233332  24579999999999999 77889999997642 222233334444443  


Q ss_pred             CCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC
Q psy16044        169 KPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC  248 (436)
Q Consensus       169 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C  248 (436)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (247)
T d1rjxb_         143 --------------------------------------------------------------------------------  142 (247)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCC
Q psy16044        249 GVGIRYSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK  328 (436)
Q Consensus       249 ~~~~~y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~  328 (436)
                                                                                                   ...
T Consensus       143 -----------------------------------------------------------------------------~~~  145 (247)
T d1rjxb_         143 -----------------------------------------------------------------------------ETQ  145 (247)
T ss_dssp             -----------------------------------------------------------------------------C--
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         221


Q ss_pred             CCCCccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCC
Q psy16044        329 PKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAK  408 (436)
Q Consensus       329 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~  408 (436)
                      . ......++.+.+.+++.+.|...........+.++|+....+....|.||+||||++.. +++|+|+||+||+..|+.
T Consensus       146 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~-~~~~~l~Gi~S~~~~c~~  223 (247)
T d1rjxb_         146 G-TFGAGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFE-KDKYILQGVTSWGLGCAR  223 (247)
T ss_dssp             ---CCCSBCEEEEEEEECHHHHTSTTTTTTCSCTTEEEESCSSSCCCBCCSCTTCEEEEEC-SSSEEEEEEECTTSCCBB
T ss_pred             C-CCCCCcceEEEEEEEchHHhhhhhccCcccccceeEEeccCCCcccccCCccceEEEee-CCEEEEEEEEEeCCCCCC
Confidence            1 12244567777888888888777655545788899998877777899999999999985 789999999999999988


Q ss_pred             CCCCeEEEeCcccHHHHHHHHhh
Q psy16044        409 SGYPDVYTKLSFYLPWIRKQINI  431 (436)
Q Consensus       409 ~~~p~v~t~V~~~~~WI~~~i~~  431 (436)
                      .+.|.+||||++|++||+++|+.
T Consensus       224 ~~~p~v~t~v~~~~~WI~~~i~~  246 (247)
T d1rjxb_         224 PNKPGVYVRVSRFVTWIEGVMRN  246 (247)
T ss_dssp             TTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCCEEEEEHHHHHHHHHHHHhc
Confidence            78899999999999999999985

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=4.1e-41  Score=300.41  Aligned_cols=221  Identities=29%  Similarity=0.457  Sum_probs=190.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.+|.+++|||+|+|.+.....  ..++|+||||+++||||||||+..         .+.|.+|...........+.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~--~~~~C~GtLIs~~~VLTaA~C~~~---------~~~v~~g~~~~~~~~~~~~~   69 (224)
T d3rp2a_           1 IIGGVESIPHSRPYMAHLDIVTEKG--LRVICGGFLISRQFVLTAAHCKGR---------EITVILGAHDVRKRESTQQK   69 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTS--CEEEEEEEESSSSEEEECGGGCCS---------EEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECcCCCCCCEEEEEEEeCCC--CeEEEEEEEEcCCeeEeccccccc---------ccEEEeccccccCcccccee
Confidence            7899999999999999998765433  268999999999999999999743         46899998877777777788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..|.++++||+|+  ...+|||||+|++|+. ++..++|+||+... .....+..+.+.|||.....+.....|+.+.++
T Consensus        70 ~~v~~~~~~~~~~~~~~~~diall~L~~~v~-~~~~~~p~~l~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~  147 (224)
T d3rp2a_          70 IKVEKQIIHESYNSVPNLHDIMLLKLEKKVE-LTPAVNVVPLPSPS-DFIHPGAMCWAAGWGKTGVRDPTSYTLREVELR  147 (224)
T ss_dssp             EEEEEEEECTTCCSSSCCSCCEEEEESSCCC-CBTTBCCCCCCCTT-CCCCTTCEEEEEESSEEETTEEECSBCEEEEEE
T ss_pred             eeEEEEEecccccccccccceeeeeecceeE-eccccceEEecccc-cccCCCcEEEEeeeeeeecCCCccceeeEEEEE
Confidence            8999999999997  5789999999999999 78889999999863 445568899999999888777777789999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.+.|...+..   ....++|+.........|.||+||||+++     |+|+||+|||..+|..+.+|+++.++..||
T Consensus       148 ~~~~~~C~~~~~~---~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~-----~~l~Gi~S~g~~~~~~p~vyt~v~~~~~WI  219 (224)
T d3rp2a_         148 IMDEKACVDYRYY---EYKFQVCVGSPTTLRAAFMGDSGGPLLCA-----GVAHGIVSYGHPDAKPPAIFTRVSTYVPWI  219 (224)
T ss_dssp             EECGGGTTTTTCC---CTTTEEEECCTTSCCBCCTTTTTCEEEET-----TEEEEEEEECCTTCCSCEEEEEHHHHHHHH
T ss_pred             ccCHHHhhhcccc---cccceeeeccCcccccCcCCCcCCeEEEc-----CEEEEEEEECCCCCCCCeEEEEHHHHHHHH
Confidence            9999999987643   34578888777777889999999999984     489999999998888899999999999999


Q ss_pred             cccc
Q psy16044        265 KESI  268 (436)
Q Consensus       265 ~~~~  268 (436)
                      ++++
T Consensus       220 ~~vi  223 (224)
T d3rp2a_         220 NAVI  223 (224)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-40  Score=294.22  Aligned_cols=227  Identities=29%  Similarity=0.505  Sum_probs=172.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccC--Cce
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEE--KSE  104 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~--~~~  104 (436)
                      |+||.++.. .|||+|+|++.+      .|+|+||||+++||||||||+.+.     ....+.|++|..+.....  ...
T Consensus         1 ~~~g~~~~~-~~~w~vsi~~~~------~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~~~v~~g~~~~~~~~~~~~~   68 (234)
T d1si5h_           1 VVNGIPTRT-NIGWMVSLRYRN------KHICGGSLIKESWVLTARQCFPSR-----DLKDYEAWLGIHDVHGRGDEKCK   68 (234)
T ss_dssp             CBSCEECSS-CCTTEEEEEESS------SEEEEEEEEETTEEEEEGGGCSSS-----CGGGEEEEESCSBSSCSTTTTTC
T ss_pred             CCCCEeCCC-CcCeEEEEEECC------cEEEEEEEEeCCEEEECcCccCCC-----CCccceEEEEeecccccccceeE
Confidence            689999976 599999998764      689999999999999999999763     356788999987654432  233


Q ss_pred             EEEeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        105 VRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       105 ~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.+.+..+..||.|    +|||||||++|+. ++.+++|||||.... .......+.+.|                    
T Consensus        69 ~~~~~~~~~~~~~~----~DIAll~L~~~v~-~~~~v~picl~~~~~-~~~~~~~~~~~g--------------------  122 (234)
T d1si5h_          69 QVLNVSQLVYGPEG----SDLVLMKLARPAV-LDDFVSTIDLPNYGS-TIPEKTSCSVYG--------------------  122 (234)
T ss_dssp             EEEEEEEEEECSST----TCEEEEEESSCCC-CSSSCCCCBCCCTTC-CCCTTCEEEEEE--------------------
T ss_pred             EEEeeccccCCCcc----cceEEEeeccCcc-ccccccccccccccc-cCCcceeEEEec--------------------
Confidence            55566666677764    8999999999998 778899999987422 222233333333                    


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (234)
T d1si5h_         123 --------------------------------------------------------------------------------  122 (234)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                                 |+..... ..+..|+.+.+.+
T Consensus       123 -----------------------------------------------------------~~~~~~~-~~~~~l~~~~~~~  142 (234)
T d1si5h_         123 -----------------------------------------------------------WGYTGLI-NYDGLLRVAHLYI  142 (234)
T ss_dssp             -----------------------------------------------------------SSCCCCS-SCCCBCEEEEEEE
T ss_pred             -----------------------------------------------------------ccccccc-cccceeEEEEeec
Confidence                                                                       3322211 2245678888888


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPW  424 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~W  424 (436)
                      ++.+.|...+.....+.++++|+.......+.|.||+||||+++. +++|+|+||+|++..|+..+.|.+||||++|++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~-~~~~~l~Gi~s~g~~c~~~~~p~vyt~i~~~~~W  221 (234)
T d1si5h_         143 MGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKW  221 (234)
T ss_dssp             ECGGGTCC-------CCTTEEEEECSSSCCBCCTTCTTCEEEEEC-SSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHH
T ss_pred             cchhHhhhhhccccccCCccEEEccCCcCCCCCcCccccceEEec-CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHH
Confidence            898888887655545788999998777667899999999999984 7899999999999999887889999999999999


Q ss_pred             HHHHHhhh
Q psy16044        425 IRKQINIA  432 (436)
Q Consensus       425 I~~~i~~~  432 (436)
                      |+++|+..
T Consensus       222 I~~~i~~~  229 (234)
T d1si5h_         222 IHKIILTY  229 (234)
T ss_dssp             HHHHHSSC
T ss_pred             HHHHhhcC
Confidence            99999643

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=2.5e-40  Score=295.21  Aligned_cols=222  Identities=27%  Similarity=0.551  Sum_probs=173.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||+++.+++|||+|+|...+      .++|+||||+++||||||||+...     ......+..+......   ..+.
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~------~~~C~GtLIs~~~VLTaAhC~~~~-----~~~~~~~~~~~~~~~~---~~~~   66 (224)
T d1gdna_           1 IVGGTSASAGDFPFIVSISRNG------GPWCGGSLLNANTVLTAAHCVSGY-----AQSGFQIRAGSLSRTS---GGIT   66 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECHHHHTTS-----CGGGEEEEESCSBSSS---SSEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------CEEEEEEEEeCCEEEECcccceec-----cccccceeeccccccC---Ccce
Confidence            7899999999999999997643      688999999999999999998764     2344566666544332   3466


Q ss_pred             EeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeecc
Q psy16044        107 IPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH  186 (436)
Q Consensus       107 ~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~  186 (436)
                      ..+..++.||.|....+|||||+|++|+. ++..++|+|++.... ....+..+.+.|||.+.                 
T Consensus        67 ~~~~~i~~h~~~~~~~~DiAll~L~~~v~-~~~~~~~i~~~~~~~-~~~~~~~~~~~g~g~~~-----------------  127 (224)
T d1gdna_          67 SSLSSVRVHPSYSGNNNDLAILKLSTSIP-SGGNIGYARLAASGS-DPVAGSSATVAGWGATS-----------------  127 (224)
T ss_dssp             EEEEEEEECTTCBTTBSCCEEEEESSCCC-CBTTBCCCCBCCTTC-CCCTTCEEEEEESCCSS-----------------
T ss_pred             EEEEEEEeeeccccccceeEEEeeccccc-cccccceeecccccc-ccccceeeeeeccCccc-----------------
Confidence            77889999999998899999999999999 677899999887432 22344555556665332                 


Q ss_pred             chhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCCcc
Q psy16044        187 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKE  266 (436)
Q Consensus       187 ~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~~~  266 (436)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (224)
T d1gdna_         128 --------------------------------------------------------------------------------  127 (224)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEee
Q psy16044        267 SIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLH  345 (436)
Q Consensus       267 ~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~  345 (436)
                                                                                    ... ..+..|+...++++
T Consensus       128 --------------------------------------------------------------~~~~~~~~~l~~~~v~~i  145 (224)
T d1gdna_         128 --------------------------------------------------------------EGGSSTPVNLLKVTVPIV  145 (224)
T ss_dssp             --------------------------------------------------------------TTCSCCCSBCEEEEEEEE
T ss_pred             --------------------------------------------------------------cCCCcCCCEeeeeEEEEe
Confidence                                                                          111 12456788888899


Q ss_pred             CccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHH
Q psy16044        346 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       346 ~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI  425 (436)
                      +.++|+..+... .+.+.++|+.........|.+|+||||++    ++|+|+||+|||..|+..+.|++||||++|++||
T Consensus       146 ~~~~C~~~~~~~-~~~~~~~~~~~~~~~~~~c~~dsG~pl~~----~~~~l~GI~S~g~~c~~~~~p~vyt~v~~y~~WI  220 (224)
T d1gdna_         146 SRATCRAQYGTS-AITNQMFCAGVSSGGKDSCQGDSGGPIVD----SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI  220 (224)
T ss_dssp             CHHHHHHHHCTT-TSCTTEEEECCTTCCCBCCTTCTTCEEEC----TTCCEEEEEEECSSSSCTTCCEEEEETTTTHHHH
T ss_pred             CHHHHhcccccC-ccccceeeeecCCCCccccccccCCceEe----cCCEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHH
Confidence            999998877653 35677788777666678999999999985    3458999999999999888899999999999999


Q ss_pred             HHH
Q psy16044        426 RKQ  428 (436)
Q Consensus       426 ~~~  428 (436)
                      +..
T Consensus       221 e~~  223 (224)
T d1gdna_         221 DTY  223 (224)
T ss_dssp             HHH
T ss_pred             HHC
Confidence            764

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-40  Score=299.42  Aligned_cols=229  Identities=34%  Similarity=0.653  Sum_probs=180.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+...      .++|+||||+++||||||||+...       ....+................
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~------~~~C~GtLI~~~~VLTaAhCv~~~-------~~~~~~~~~~~~~~~~~~~~~   67 (235)
T d1rfna_           1 VVGGEDAKPGQFPWQVVLNGKV------DAFCGGSIVNEKWIVTAAHCVETG-------VKITVVAGEHNIEETEHTEQK   67 (235)
T ss_dssp             CBTCEECCTTSSTTEEEEESSS------TTCEEEEEEETTEEEECGGGCCTT-------CCCEEEESCSBSSSCCSCCEE
T ss_pred             CCCCEECCCCCcCCEEEEecCC------CEEEEEEEeeCCEEEEChhhcCCC-------CceEEEEeecccccCCCCcce
Confidence            7899999999999999997543      578999999999999999999764       223444444444444455567


Q ss_pred             EeeeEEEeCCCCC----CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~----~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      ..+.++++||+|+    ...+|||||||++|+. ++..+.|+|||.......                            
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~diAllkL~~~~~-~~~~~~p~~l~~~~~~~~----------------------------  118 (235)
T d1rfna_          68 RNVIRIIPHHNYNAAINKYNHDIALLELDEPLV-LNSYVTPICIADKEYTNI----------------------------  118 (235)
T ss_dssp             EEEEEEEECTTCBTTTBSSTTCCEEEEESSCCC-CBTTBCCCBCCCHHHHHH----------------------------
T ss_pred             eeeeEEeeccCCCCCcCccCceEEEEEeCCCcc-CCCccceeeecccccccc----------------------------
Confidence            7899999999997    3568999999999999 778899999986310000                            


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceec
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLI  262 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~  262 (436)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (235)
T d1rfna_         119 --------------------------------------------------------------------------------  118 (235)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEE
Q psy16044        263 NGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  342 (436)
Q Consensus       263 ~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~  342 (436)
                                                                        ......+.+.||+...........|+++.+
T Consensus       119 --------------------------------------------------~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~  148 (235)
T d1rfna_         119 --------------------------------------------------FLKFGSGYVSGWGRVFHKGRSALVLQYLRV  148 (235)
T ss_dssp             --------------------------------------------------HHTTSEEEEEESCBSSTTSCBCSBCEEEEE
T ss_pred             --------------------------------------------------ccccceEEEeccccccccccccCcceEEEE
Confidence                                                              001223445555555444445667899999


Q ss_pred             EeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccH
Q psy16044        343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYL  422 (436)
Q Consensus       343 ~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~  422 (436)
                      .+++...|...+..  .+.+..+|+....+....|.||+||||++.. +++|+|+||+||+..|+..+.|.+||||++|+
T Consensus       149 ~~~~~~~c~~~~~~--~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~-~~~~~l~Gi~s~g~~~~~~~~p~vyt~v~~~~  225 (235)
T d1rfna_         149 PLVDRATCLRSTKF--TIYNNMFCAGFHEGGRDSCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYV  225 (235)
T ss_dssp             EBCCHHHHHHHCSS--CCCTTEEEESCSSCSCBCCTTCTTCEEEEES-SSCEEEEEEEEEESSSSCTTCCEEEEEGGGTH
T ss_pred             ecccccccccccCc--eecCCeeEeecCCCCccccCCCCCceeEEec-CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHH
Confidence            99999999888765  3566777777767767899999999999974 78999999999999999888899999999999


Q ss_pred             HHHHHHHh
Q psy16044        423 PWIRKQIN  430 (436)
Q Consensus       423 ~WI~~~i~  430 (436)
                      +||+++|+
T Consensus       226 ~WI~~~~~  233 (235)
T d1rfna_         226 NWIKEKTK  233 (235)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99999997

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=295.76  Aligned_cols=221  Identities=29%  Similarity=0.490  Sum_probs=188.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+.....   ..++|+||||+++||||||||+.+         ...|.+|.............
T Consensus         1 IvgG~~a~~~e~Pw~v~i~~~~~~---~~~~C~GtlI~~~~VLTaAhC~~~---------~~~v~~g~~~~~~~~~~~~~   68 (224)
T d1t32a1           1 IIGGRESRPHSRPYMAYLQIQSPA---GQSRCGGFLVREDFVLTAAHCWGS---------NINVTLGAHNIQRRENTQQH   68 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESSST---TSCEEEEEEEETTEEEECGGGCCS---------CEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCC---CCEEEEEEEEcCCEEEEeEEcccc---------cccceeeeeeeeccccceee
Confidence            789999999999999999875432   267999999999999999999754         35788888877777667788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+.+++.||+|.  ...+||||++|+.|+. ++.+++|+|||... .....+..+...|||..... .....|+++.+.
T Consensus        69 ~~v~~i~~~~~~~~~~~~~diaL~~l~~~~~-~~~~~~pi~l~~~~-~~~~~~~~~~~~g~g~~~~~-~~~~~l~~~~~~  145 (224)
T d1t32a1          69 ITARRAIRHPQYNQRTIQNDIMLLQLSRRVR-RNRNVNPVALPRAQ-EGLRPGTLCTVAGWGRVSMR-RGTDTLREVQLR  145 (224)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCC-CBTTBCCCCCCCTT-CCCCTTCEEEEEESCCSSSS-CCCSBCEEEEEE
T ss_pred             ecceeEEEeecccccccccceeEEeeccccc-cCcccCcccccccc-ccCCCCCEEEEecccccccC-CCcceeeeeeee
Confidence            8999999999997  4679999999999999 77889999999874 34557889999999976633 445679999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.++|.+.+...  ..+.++|+....+..+.|.|||||||+++     ++|+||+|||..||..+.+|++|..|..||
T Consensus       146 ~~~~~~C~~~~~~~--~~~~~~c~~~~~~~~~~c~gdsGgPl~~~-----~~l~Gi~S~g~~~~~~p~vyt~v~~y~~WI  218 (224)
T d1t32a1         146 VQRDRQCLRIFGSY--DPRRQICVGDRRERKAAFKGDSGGPLLCN-----NVAHGIVSYGKSSGVPPEVFTRVSSFLPWI  218 (224)
T ss_dssp             BCCHHHHHHHSTTC--CTTTEEEECCTTSSCBCCTTCTTCEEEET-----TEEEEEEEECCTTCCSCEEEEEGGGSHHHH
T ss_pred             ecCHHHHHhhcCcc--cccccceeecccccccccccCcCCeEEEc-----CEEEEEEEEcCCCCCCCcEEEEHHHhHHHH
Confidence            99999999988653  34689998877777899999999999984     379999999999888889999999999999


Q ss_pred             ccccC
Q psy16044        265 KESIR  269 (436)
Q Consensus       265 ~~~~~  269 (436)
                      ++++.
T Consensus       219 ~~~i~  223 (224)
T d1t32a1         219 RTTMR  223 (224)
T ss_dssp             HHHHC
T ss_pred             HHHHc
Confidence            88764

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-40  Score=295.34  Aligned_cols=222  Identities=27%  Similarity=0.472  Sum_probs=187.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|.+....   ..++|+||||+++||||||||+..         ...+.+|...........+.
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~---~~~~C~GtLIs~~~VLTaAhC~~~---------~~~~~~~~~~~~~~~~~~~~   68 (224)
T d1eufa_           1 IIGGHEAKPHSRPYMAFLLFKTSG---KSHICGGFLVREDFVLTAAHCLGS---------SINVTLGAHNIMERERTQQV   68 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSS---SEEEEEEEEEETTEEEECGGGCCE---------EEEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCC---CcEEEEEEEEcCCEEEeeceeccc---------ccceeeeeeeecccCCCcEE
Confidence            789999999999999999876532   268899999999999999999854         24567777766666666788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|+++++||+|+  ...+|||||||++|+. ++..+.|+|++... .....+..+++.|||.+.........++...+.
T Consensus        69 ~~V~~i~~hp~~~~~~~~~DiAll~L~~~~~-~~~~~~p~~~~~~~-~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~  146 (224)
T d1eufa_          69 IPVRRPIPHPDYNDETLANDIMLLKLTRKAD-ITDKVSPINLPRSL-AEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLE  146 (224)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CCSSCCCCCCCCTT-CCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEE
T ss_pred             EEEEEEEECCccccccccccceeeeccceeE-EeeeEeeeeeeccc-ccccCCceEEEecccceeccccccccceeeeec
Confidence            9999999999997  4679999999999999 78889999999863 445677889999999998888778889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.++|...+....  ...++|..........|.+|+||||+++     ++|+||+|||.+++..+.+|++|.+|..||
T Consensus       147 ~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~~c~~dsGgpl~~~-----~~l~Gi~s~g~~~~~~p~vft~V~~y~~WI  219 (224)
T d1eufa_         147 VQSEEKCIARFKNYI--PFTQICAGDPSKRKNSFSGDSGGPLVCN-----GVAQGIVSYGRNDGTTPDVYTRISSFLSWI  219 (224)
T ss_dssp             BCCTHHHHTTCTTCC--TTTEEEESCTTSCCBCCTTCTTCEEEET-----TEEEEEEEECCTTCCSCEEEEEGGGTHHHH
T ss_pred             cCCHHHHHHHhcccc--ccceeeeeccccccccccCCCCCeEEEc-----CEEEEEEEEcCCCCCCCeEEEEHHHHHHHH
Confidence            999999998875433  2356666555556889999999999984     379999999999888889999999999999


Q ss_pred             ccccC
Q psy16044        265 KESIR  269 (436)
Q Consensus       265 ~~~~~  269 (436)
                      ++.++
T Consensus       220 ~~~ik  224 (224)
T d1eufa_         220 HSTMR  224 (224)
T ss_dssp             HHHTC
T ss_pred             HHHhC
Confidence            88653

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=295.47  Aligned_cols=215  Identities=29%  Similarity=0.514  Sum_probs=181.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|++++|||+|+|+...      .++|+||||+++||||||||+...         ..|++|...........+.
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~------~~~C~GtLIs~~~VLTaAhCv~~~---------~~v~~g~~~~~~~~~~~~~   65 (221)
T d1lo6a_           1 LVHGGPCDKTSHPYQAALYTSG------HLLCGGVLIHPLWVLTAAHCKKPN---------LQVFLGKHNLRQRESSQEQ   65 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEEEETTEEEECGGGCCTT---------CEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEEECC------cEEEEEEEEeCCEEEECeeccccc---------cceeeceeeecccCcccee
Confidence            7899999999999999998643      689999999999999999998642         4788998887777777788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+.++++||+|+  ...+|||||+|+.++. ++..++|+|||...   ...+..+.++|||..... ..+..|+...+.
T Consensus        66 ~~~~~~~~~p~y~~~~~~~diAll~l~~~~~-~~~~v~pi~l~~~~---~~~~~~~~~~Gwg~~~~~-~~~~~l~~~~~~  140 (221)
T d1lo6a_          66 SSVVRAVIHPDYDAASHDQDIMLLRLARPAK-LSELIQPLPLERDC---SANTTSCHILGWGKTADG-DFPDTIQCAYIH  140 (221)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCCBCCCT---TCCCCEEEEEESSCCTTS-SCCSBCEEEEEE
T ss_pred             eeccccccCCCcccccccceeEEeecccccc-eeeeEEeccccccC---CcccceEEEEecccccCC-CCCccceEEEEE
Confidence            8999999999997  4789999999999999 78889999999742   346788999999987743 456789999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CCccccccccee
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VGIRYSHRQPRL  261 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~~~y~~v~~~~  261 (436)
                      +++.++|++.+....  .+.++|..........|.||+||||+++.     +|+||+|||...|.   .+.+|++|.++.
T Consensus       141 ~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~~c~gd~G~Pl~~~~-----~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~  213 (221)
T d1lo6a_         141 LVSREECEHAYPGQI--TQNMLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVCRYT  213 (221)
T ss_dssp             EECHHHHHHHSTTTC--CTTEEEEECTTTCCBCCTTTTTCEEEETT-----EEEEEEEECCSSCCCSSSCEEEEEGGGGH
T ss_pred             EecHHHHHHHcCCCc--cCCceeeeccccCCCCccCCCCCcEEECC-----EEEEEEEEccCCCCCCCCCeEEEEHHHHH
Confidence            999999999986533  34666666666668899999999999853     69999999987553   346899999999


Q ss_pred             cCCcccc
Q psy16044        262 INGKESI  268 (436)
Q Consensus       262 ~~~~~~~  268 (436)
                      .||.+++
T Consensus       214 ~WI~~~i  220 (221)
T d1lo6a_         214 NWIQKTI  220 (221)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=100.00  E-value=4.7e-40  Score=294.27  Aligned_cols=224  Identities=30%  Similarity=0.592  Sum_probs=176.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.++||||+|+|.....     .++|+||||+++||||||||+....     .....+..+.  ........+.
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~-----~~~C~GtLIs~~~VLTaAhCv~~~~-----~~~~~~~~~~--~~~~~~~~~~   68 (228)
T d1fxya_           1 IVGGYNCKDGEVPWQALLINEEN-----EGFCGGTILSEFYILTAAHCLYQAK-----RFKVRVGDRN--TEQEEGGEAV   68 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTS-----CEEEEEEECSSSEEEECGGGTTSCS-----SCEEEEECSC--TTTCCCCEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEcCC-----CeEEEEEEeeCCEEEECceeeeccc-----cccccccccc--ccccCCccee
Confidence            78999999999999999976432     6889999999999999999997641     2233333333  2233344466


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+..++.||.|.  ...+||||++|+.++. ++.+++|||||....   .....+.++|||.+.               
T Consensus        69 ~~~~~~~~~~~~~~~~~~~diAl~~l~~~~~-~~~~~~picL~~~~~---~~~~~~~~~gwg~~~---------------  129 (228)
T d1fxya_          69 HEVEVVIKHNRFTKETYDFDIAVLRLKTPIT-FRMNVAPASLPTAPP---ATGTKCLISGWGNTA---------------  129 (228)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCC-CBTTBCCCCCCSSCC---CTTCEEEEEESSCCC---------------
T ss_pred             eeeeccceeeeeeccccccceeehhcccccc-ccccccccccccccc---ccccEEEEEeccccc---------------
Confidence            6778888999986  4779999999999998 778899999987422   234566666766432               


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (228)
T d1fxya_         130 --------------------------------------------------------------------------------  129 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC-CCccccceEEEEE
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVP  343 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~  343 (436)
                                                                                      .. ...+..|+.+.+.
T Consensus       130 ----------------------------------------------------------------~~~~~~~~~l~~~~~~  145 (228)
T d1fxya_         130 ----------------------------------------------------------------SSGADYPDELQCLDAP  145 (228)
T ss_dssp             ----------------------------------------------------------------SSSCCCCSSCEEEEEE
T ss_pred             ----------------------------------------------------------------CCCCCCCchhEEEEEE
Confidence                                                                            11 1124568899999


Q ss_pred             eeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHH
Q psy16044        344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       344 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~  423 (436)
                      +++.++|+..+..  .+.+.++|+.........|.||+||||+++     ++|+||+||+..|+..+.|.+||||++|++
T Consensus       146 ~~~~~~C~~~~~~--~~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~-----~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~  218 (228)
T d1fxya_         146 VLSQAKCEASYPG--KITSNMFCVGFLEGGKDSCQGDSGGPVVCN-----GQLQGVVSWGDGCAQKNKPGVYTKVYNYVK  218 (228)
T ss_dssp             BCCHHHHHHHSTT--TCCTTEEEESCTTCSCBCCTTCTTCEEEET-----TEEEEEEEECSSSSBTTBCEEEEEGGGGHH
T ss_pred             EeCHHHHhhhcCC--cccceeeEeecCCCCcccccCccCccEEEe-----CEEEEEEEECCCCCCCCCCEEEEEHHHHHH
Confidence            9999999998866  467889998777777789999999999984     369999999999987788999999999999


Q ss_pred             HHHHHHhhh
Q psy16044        424 WIRKQINIA  432 (436)
Q Consensus       424 WI~~~i~~~  432 (436)
                      ||+++|+.+
T Consensus       219 WI~~~i~~~  227 (228)
T d1fxya_         219 WIKNTIAAN  227 (228)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999865

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-41  Score=303.67  Aligned_cols=230  Identities=25%  Similarity=0.416  Sum_probs=186.2

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|..        .++|+||||+++||||||||+............+.|++|..+..... ..+.
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~--------~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~-~~~~   71 (240)
T d2qy0b1           1 IIGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELM-KLGN   71 (240)
T ss_dssp             CBSCEECCTTSSTTEEEEES--------SSEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHH-HHCC
T ss_pred             CCCCEECCCCCcCCEEEECC--------CceEEEEEEcCCEEEEChHhCCCcccccccccceeeeeeeccccccC-Ccce
Confidence            78999999999999999864        45799999999999999999987654444456689999986543322 2345


Q ss_pred             EeeeEEEeCCCCCC-----CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceee
Q psy16044        107 IPVERIRVHEEFHN-----YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQI  181 (436)
Q Consensus       107 ~~v~~i~~hp~y~~-----~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~  181 (436)
                      +.|+++++||+|+.     ..+|||||+|++|+. ++.+++|||++... .....+..+++.|||....  ..+..++..
T Consensus        72 ~~v~~i~vhp~y~~~~~~~~~~DiAll~L~~pi~-~~~~v~pi~l~~~~-~~~~~~~~~~~~g~g~~~~--~~~~~~~~~  147 (240)
T d2qy0b1          72 HPIRRVSVHPDYRQDESYNFEGDIALLELENSVT-LGPNLLPICLPDND-TFYDLGLMGYVSGFGVMEE--KIAHDLRFV  147 (240)
T ss_dssp             CCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCC-CBTTBCCCBCCCSG-GGGCTTCEEEEEECCCCSS--SCCSBCEEE
T ss_pred             EEEEEEEeccccccccccccCCCceEEecCCccc-cccccceEEecccc-cccccCceeeecccccccc--cccccceEE
Confidence            78999999999973     468999999999999 78899999998863 3345678899999998763  334678888


Q ss_pred             eeeccchhhhhhhcC---CCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEec-CCcEEEEEEEeEcCCCCCCCcccccc
Q psy16044        182 RVPLHNISVCRDKYG---DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGYCGVGIRYSHR  257 (436)
Q Consensus       182 ~~~~~~~~~C~~~~~---~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~-~~~~~l~GI~S~g~~~C~~~~~y~~v  257 (436)
                      .+.+++...|+..+.   ......+.++|+.......+.|.||||+||++... .++|+|+||+|||.+|+..+.+|++|
T Consensus       148 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S~g~~c~~~p~vft~v  227 (240)
T d2qy0b1         148 RLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKV  227 (240)
T ss_dssp             EEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSSSCEEEEEG
T ss_pred             EEEEcCHHHHHHHhhccccCCceecceEEeccCCccceeeccccccceEEEeCCCCeEEEEEEEEECCCCCCCCeEEEEH
Confidence            999999999998763   22235678999988887789999999999999754 35799999999999877777899999


Q ss_pred             cceecCCccccC
Q psy16044        258 QPRLINGKESIR  269 (436)
Q Consensus       258 ~~~~~~~~~~~~  269 (436)
                      .+|..||++.+.
T Consensus       228 ~~~~~WI~~~i~  239 (240)
T d2qy0b1         228 LNYVDWIKKEME  239 (240)
T ss_dssp             GGGHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999987764

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-40  Score=298.50  Aligned_cols=229  Identities=26%  Similarity=0.408  Sum_probs=187.7

Q ss_pred             eEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceE
Q psy16044         26 RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEV  105 (436)
Q Consensus        26 ~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~  105 (436)
                      ||+||++|.+++|||+|+|++.+      .++|+||||+++||||||||+.+..    ......|..+............
T Consensus         2 ri~gG~~a~~~e~Pw~v~i~~~~------~~~C~GtLIs~~~VLTAAhCv~~~~----~~~~~~v~~~~~~~~~~~~~~~   71 (240)
T d1mzaa_           2 EIIGGKEVSPHSRPFMASIQYGG------HHVCGGVLIDPQWVLTAAHCQYRFT----KGQSPTVVLGAHSLSKNEASKQ   71 (240)
T ss_dssp             CCCCCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGSCTTC----SCSCEEEEESCSBSSSCCTTCE
T ss_pred             EEECCEECCCCCCCcEEEEEECC------eEEEEEEEEeCCEEEECeEcccccC----CcceeEEEEeecccCcCCccce
Confidence            89999999999999999998643      6789999999999999999997642    2345778888777766666678


Q ss_pred             EEeeeEEEeCCCCCC--CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCC-CCCccccceeee
Q psy16044        106 RIPVERIRVHEEFHN--YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIR  182 (436)
Q Consensus       106 ~~~v~~i~~hp~y~~--~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~-~~~~~~~l~~~~  182 (436)
                      .+.+..++.||.|+.  ..+|||||+|++|+. ++..++||||+....  ......+.+.|||.+.. .+.....|+...
T Consensus        72 ~~~~~~i~~h~~~~~~~~~~diAll~l~~~~~-~~~~~~picL~~~~~--~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~  148 (240)
T d1mzaa_          72 TLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAK-LNKHVKMLHIRSKTS--LRSGTKCKVTGWGATDPDSLRPSDTLREVT  148 (240)
T ss_dssp             EEEEEEEEECCCSSCSSSSSCCEEEEESSCCC-CBTTBCCCCBCSSCC--CCTTCEEEEEECCCSSTTCSSCCSBCEEEE
T ss_pred             eEeeeeeeeeccccccccCcceEEEeecceee-eeecccccccccccc--ccceeeEEEEEeccccCCcCcCCcccEEEE
Confidence            889999999999984  578999999999999 788899999988533  33456788999998764 345567799999


Q ss_pred             eeccchhhhhhhcCC--CcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCccccccc
Q psy16044        183 VPLHNISVCRDKYGD--SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQ  258 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~--~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~  258 (436)
                      +.++..++|+.....  .....+.++|++...+..+.|.|||||||+++     ++|+||+|||.+||.  .+.+|++|.
T Consensus       149 ~~~~~~~~C~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~-----~~l~Gi~S~g~~c~~~~~p~vftrvs  223 (240)
T d1mzaa_         149 VTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICK-----GVFHAIVSGGHECGVATKPGIYTLLT  223 (240)
T ss_dssp             EEECCHHHHTSTTTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEET-----TEEEEEECSSCCSSCTTCCEEEEECC
T ss_pred             EEEecHHHhhhhhhccCCcccccceEEeccCCCCccCccCCCCCeEEEC-----CEEEEEEEeCCCCCCCCCCeEEEEEH
Confidence            999999999876532  22345689999888877899999999999984     379999999987433  346899997


Q ss_pred             -ceecCCccccCCCC
Q psy16044        259 -PRLINGKESIRGAW  272 (436)
Q Consensus       259 -~~~~~~~~~~~~~~  272 (436)
                       +|+.||++.+...|
T Consensus       224 ~~y~~WI~~~i~~~~  238 (240)
T d1mzaa_         224 KKYQTWIKSNLVPPH  238 (240)
T ss_dssp             HHHHHHHHHHTCCSC
T ss_pred             HHHHHHHHHHccCCC
Confidence             68999999887665

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-41  Score=303.25  Aligned_cols=224  Identities=27%  Similarity=0.480  Sum_probs=189.4

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|.......   .++|+||||+++||||||||+..         ...|.+|...........+.
T Consensus         1 iigG~~a~~~~~Pw~v~l~~~~~~~---~~~C~GtLIs~~~VLTaAhC~~~---------~~~v~~g~~~~~~~~~~~~~   68 (227)
T d1fq3a_           1 IIGGHEAKPHSRPYMAYLMIWDQKS---LKRCGGFLIQDDFVLTAAHCWGS---------SINVTLGAHNIKEQEPTQQF   68 (227)
T ss_dssp             CBTCBCCCTTSCTTEEECCEEETTE---EECCEEEEEETTEEEECGGGCCS---------EEEEEESCSBTTTTCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCC---cEEEEEEEEeCCEEEeCEeeccc---------cccceeccccccccccccEE
Confidence            7899999999999999997654322   57899999999999999999854         35788888777666666788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.+.+++.||.|+  ...+|||||+|++|+. ++.+++|+||+... .....+..+.+.|||.+...+.....|+.+.+.
T Consensus        69 ~~v~~i~~~~~~~~~~~~~DiAll~L~~~i~-~~~~v~~~~l~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~  146 (227)
T d1fq3a_          69 IPVKRPIPHPAYNPKNFSNDIMLLQLERKAK-RTRAVQPLRLPSNK-AQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMT  146 (227)
T ss_dssp             EEEEEECCCTTCCTTTTTTCCEEEEESSCCC-CCSSCCCCCCCCSS-CCCCTTCEEECCCSCCSTTTSCCCSBCCBCEEE
T ss_pred             EEEEEEEecccCCCCCCCcchhhhhcccccc-cceeEEEEeecccc-cccCCCCEEEEEeeccccCcccccccceEEEEE
Confidence            8999999999997  4689999999999999 77889999999863 445578889999999988777777889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                      +++.+.|+..+..... ...++|..........|.||+||||+++     |+|+||+|||..||..+.+|++|.+|.+||
T Consensus       147 ~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~gdsG~pl~~~-----~~l~GI~s~g~~~~~~p~vyt~v~~y~~WI  220 (227)
T d1fq3a_         147 VQEDRKCESDLRHYYD-STIELCVGDPEIKKTSFKGDSGGPLVCN-----KVAQGIVSYGRNNGMPPRACTKVSSFVHWI  220 (227)
T ss_dssp             CCCHHHHTTTCTTTCC-TTTEECCSCTTSSCBCCTTCTTCBCBSS-----SSCCCEECCCCTTSCSCCCEECHHHHHHHH
T ss_pred             EEcHHHhhhhhccccc-ccceeeeeccccccccccCCCCceEEEe-----CEEEEEEEEcCCCCCCCcEEEEHHHHHHHH
Confidence            9999999988765433 3455666556666889999999999984     379999999999888888999999999999


Q ss_pred             ccccCC
Q psy16044        265 KESIRG  270 (436)
Q Consensus       265 ~~~~~~  270 (436)
                      ++++.+
T Consensus       221 ~~~i~~  226 (227)
T d1fq3a_         221 KKTMKR  226 (227)
T ss_dssp             HHHTTC
T ss_pred             HHHHHh
Confidence            987764

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.6e-40  Score=291.13  Aligned_cols=220  Identities=33%  Similarity=0.639  Sum_probs=178.8

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|...       .++|+||||+++||||||||+.+.         ..+.+|...........+.
T Consensus         1 i~GG~~a~~~~~Pw~v~l~~~-------~~~C~GtLIs~~~VLTaAhC~~~~---------~~~~~~~~~~~~~~~~~~~   64 (223)
T d1hj9a_           1 IVGGYTCGANTVPYQVSLNSG-------YHFCGGSLINSQWVVSAAHCYKSG---------IQVRLGEDNINVVEGNEQF   64 (223)
T ss_dssp             CCSCEECCTTSSTTEEEEESS-------SEEEEEEEEETTEEEECGGGCCSS---------CEEEESCSSTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCeEEEEECC-------CEEEEEEEeeCCEEEeCeeECCCc---------Ccceecccccccccceeee
Confidence            789999999999999999521       678999999999999999998653         2456777666655566688


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+..+++||.|+  ...+|||||+|++++. ++..++|+||+...   ......+.+.||+.+.               
T Consensus        65 ~~~~~~~~~~~~~~~~~~~diAll~l~~~~~-~~~~~~p~cl~~~~---~~~~~~~~~~g~~~~~---------------  125 (223)
T d1hj9a_          65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAAS-LNSRVASISLPTSC---ASAGTQCLISGWGNTK---------------  125 (223)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCC-CBTTBCCCBCCSSC---CCTTCEEEEEESSCCC---------------
T ss_pred             eceeeEEeccccccccccchhhhhhccccee-eeeeeecccccccc---ccccceEEEEeecccc---------------
Confidence            8899999999998  4689999999999999 77789999998742   2234455666665321               


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (223)
T d1hj9a_         126 --------------------------------------------------------------------------------  125 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC-CCccccceEEEEE
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVP  343 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~  343 (436)
                                                                                      .. ...+..++...++
T Consensus       126 ----------------------------------------------------------------~~~~~~~~~l~~~~~~  141 (223)
T d1hj9a_         126 ----------------------------------------------------------------SSGTSYPDVLKCLKAP  141 (223)
T ss_dssp             ----------------------------------------------------------------SSSCCCCSSCEEEEEE
T ss_pred             ----------------------------------------------------------------CCCCCCCccceEEEEe
Confidence                                                                            11 1124568889999


Q ss_pred             eeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHH
Q psy16044        344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       344 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~  423 (436)
                      +++.++|++.+..  .+.++++|+....+....|.||+|+||+++     ++|+||+||+..|+..+.|++||||++|++
T Consensus       142 ~~~~~~C~~~~~~--~~~~~~~c~~~~~~~~~~~~gd~g~pl~~~-----~~L~Gi~S~g~~c~~~~~p~vyt~v~~~~~  214 (223)
T d1hj9a_         142 ILSDSSCKSAYPG--QITSNMFCAYGLEGKGDSCQGDSGGPVVCS-----GKLQGIVSWGSGCQAKNKPGVYTKVCNYVS  214 (223)
T ss_dssp             CCCHHHHHHHSTT--TCCTTEEECCCCCCCCCCCTTCTTCEEEET-----TEEEEEEEECSCCCCCCCCCEEEEGGGGHH
T ss_pred             ecCHHHHHHHhCC--cccccceEEeecCCCcccccCCCCceeEEe-----CEEEEEEEEcCCCCCCCCCEEEEEHHHHHH
Confidence            9999999998866  467889998877777789999999999984     369999999999988888999999999999


Q ss_pred             HHHHHHhhh
Q psy16044        424 WIRKQINIA  432 (436)
Q Consensus       424 WI~~~i~~~  432 (436)
                      ||+++|+.+
T Consensus       215 WI~~~i~~~  223 (223)
T d1hj9a_         215 WIKQTIASN  223 (223)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            999999753

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9e-40  Score=294.17  Aligned_cols=221  Identities=32%  Similarity=0.636  Sum_probs=169.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||+++.+++|||+|+|+...      .++|+||||+++||||||||+...         ..+++|...........+.
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~------~~~C~GtLIs~~~VLTaAhCv~~~---------~~v~~~~~~~~~~~~~~~~   65 (237)
T d1ao5a_           1 VVGGFNCEKNSQPWQVAVYYQK------EHICGGVLLDRNWVLTAAHCYVDQ---------YEVWLGKNKLFQEEPSAQH   65 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEEEETTEEEECTTCCCSS---------CEEEESCCBSSSCCSSCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------cEEEEEEEeeCCEEEECHHHcCCC---------ceEEEEeccccccccccEE
Confidence            7899999999999999998643      689999999999999999998653         3688888877776667788


Q ss_pred             EeeeEEEeCCCCCC-------------CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC
Q psy16044        107 IPVERIRVHEEFHN-------------YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD  173 (436)
Q Consensus       107 ~~v~~i~~hp~y~~-------------~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~  173 (436)
                      ..+.+++.||.|+.             ..+|||||||++|+. +...++|+|||..                        
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~~i~-~~~~~~~i~lp~~------------------------  120 (237)
T d1ao5a_          66 RLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPAD-ITDVVKPIALPTK------------------------  120 (237)
T ss_dssp             CCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCC-CCSSSCCCCCCCS------------------------
T ss_pred             EEEEEEeecccccccccccccccCccccccceeeeccCcccc-cccccceeccCCC------------------------
Confidence            88999999999851             235666666666665 4455556665543                        


Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcc
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR  253 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~  253 (436)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (237)
T d1ao5a_         121 --------------------------------------------------------------------------------  120 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC-CC
Q psy16044        254 YSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GD  332 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~-~~  332 (436)
                                                                             ..   .....+.++||+..... ..
T Consensus       121 -------------------------------------------------------~~---~~~~~~~~~g~~~~~~~~~~  142 (237)
T d1ao5a_         121 -------------------------------------------------------EP---KPGSKCLASGWGSITPTRWQ  142 (237)
T ss_dssp             -------------------------------------------------------CC---CTTCEEEEEESCCSSCC-CC
T ss_pred             -------------------------------------------------------CC---cccceEEEeeeeeecccccc
Confidence                                                                   22   22334444444433222 12


Q ss_pred             ccccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCC
Q psy16044        333 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGY  411 (436)
Q Consensus       333 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~  411 (436)
                      .+..+....+..++.+.|......  .+.++++|+.........|.||+||||+++     ++|+||+|||. .|+..+.
T Consensus       143 ~~~~~~~~~~~~~~~~~c~~~~~~--~~~~~~~~~~~~~~~~~~c~gdsG~pl~~~-----~~l~Gi~S~g~~~c~~~~~  215 (237)
T d1ao5a_         143 KPDDLQCVFITLLPNENCAKVYLQ--KVTDVMLCAGEMGGGKDTCRDDSGGPLICD-----GILQGTTSYGPVPCGKPGV  215 (237)
T ss_dssp             CCSBCEEEEEEEECHHHHHHHCSS--CCCTTEEEEECTTCSCBCCTTCTTCEEEET-----TEEEEEEEECCSSTTCTTC
T ss_pred             CCccceeeEEEEEehHHhhhhhcC--CCCCCeEEEccCCCCCcccCCCCCCeeEEc-----cEEEEEEEEecCCCCCCCC
Confidence            245677888899999999998876  467889998776666789999999999984     37999999986 5877788


Q ss_pred             CeEEEeCcccHHHHHHHHhhh
Q psy16044        412 PDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       412 p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      |.+||||++|++||+++|+++
T Consensus       216 p~vft~V~~y~~WI~~~i~~n  236 (237)
T d1ao5a_         216 PAIYTNLIKFNSWIKDTMMKN  236 (237)
T ss_dssp             CEEEECGGGGHHHHHHHHHHC
T ss_pred             CeEEEEHHHHHHHHHHHHHhc
Confidence            999999999999999999875

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-40  Score=294.05  Aligned_cols=220  Identities=27%  Similarity=0.417  Sum_probs=186.7

Q ss_pred             CCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEe
Q psy16044         29 NGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIP  108 (436)
Q Consensus        29 ~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~  108 (436)
                      ||++|++++|||+|+|+......+  .++|+|+||+++||||||||+..         .+.|++|..+........+...
T Consensus         1 GG~~a~~~e~Pw~v~i~~~~~~~~--~~~C~G~LIs~~~VLTaAhCv~~---------~~~v~~g~~~~~~~~~~~~~~~   69 (224)
T d1nn6a_           1 GGTECKPHSRPYMAYLEIVTSNGP--SKFCGGFLIRRNFVLTAAHCAGR---------SITVTLGAHNITEEEDTWQKLE   69 (224)
T ss_dssp             CCEECCTTSSTTEEEEEEECTTSC--EEEEEEEEEETTEEEECGGGCCS---------EEEEEESCSBTTSCCTTCEEEE
T ss_pred             CCcCCcCCCCCCEEEEEEEeCCCC--ceEEEEEEEeCCEEEehhhcccc---------cceEEeccccccccccccccee
Confidence            799999999999999987654332  67899999999999999999854         3689999998888777778899


Q ss_pred             eeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeecc
Q psy16044        109 VERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH  186 (436)
Q Consensus       109 v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~  186 (436)
                      +.+++.||.|+  ...+|||||+|..|+. ++..++|+|++... .....+..+...||+.....+.....++...+.++
T Consensus        70 ~~~~~~~p~~~~~~~~~diall~l~~~~~-~~~~~~pi~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  147 (224)
T d1nn6a_          70 VIKQFRHPKYNTSTLHHDIMLLKLKEKAS-LTLAVGTLPFPSQF-NFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLM  147 (224)
T ss_dssp             EEEEEECTTCCTTTCTTCCEEEEESSCCC-CCSSCCCCCCCSCC-CCCCTTCEEEEEECCCCSSSCCCCSBCEEEEEEBC
T ss_pred             EEEEEEeecccccccccchhhhcccCCcc-cccccccccccccc-cccCCCceeeeccccccccCCCccccceEEEEEec
Confidence            99999999997  4689999999999999 78889999998864 33446788999999988777777788999999999


Q ss_pred             chhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCCcc
Q psy16044        187 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKE  266 (436)
Q Consensus       187 ~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~~~  266 (436)
                      +.++|+..+...   ....+|+.......+.|.||+||||++.     |+|+||+|||..+|..+.+|++|.++..||++
T Consensus       148 ~~~~C~~~~~~~---~~~~~~~~~~~~~~~~c~gDsG~PL~~~-----~~l~GI~s~g~~~~~~p~vyt~v~~y~~WI~~  219 (224)
T d1nn6a_         148 DPQACSHFRDFD---HNLQLCVGNPRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDAKPPAVFTRISHYRPWINQ  219 (224)
T ss_dssp             CGGGGTTSTTCC---TTTEEEECCTTTC--CCCCCTTCEEEET-----TEEEEEEEECCTTCCSCEEEEEHHHHHHHHHH
T ss_pred             CHHHHhhhcccc---cceeeeccCccccccccCCCccceEEEC-----CEEEEEEEECCCCCCCCeEEEEHHHHHHHHHH
Confidence            999998776542   3467777666666889999999999984     47999999999888888999999999999988


Q ss_pred             ccC
Q psy16044        267 SIR  269 (436)
Q Consensus       267 ~~~  269 (436)
                      ++.
T Consensus       220 ~i~  222 (224)
T d1nn6a_         220 ILQ  222 (224)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            763

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-40  Score=304.11  Aligned_cols=236  Identities=25%  Similarity=0.508  Sum_probs=182.5

Q ss_pred             CCCCccCCCCCCeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEec
Q psy16044         14 CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLG   93 (436)
Q Consensus        14 CG~~~~~~~~~~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g   93 (436)
                      ||+...++...+||+||+++..++|||+|+|.         .++|+||||+++||||||||+.+.       ....+++|
T Consensus         1 cg~~~~~~~~~~ri~gG~~~~~~~~Pw~v~l~---------~~~C~GtLIs~~~VLTaAhCv~~~-------~~~~v~~g   64 (259)
T d1elva1           1 CGVPREPFEEKQRIIGGSDADIKNFPWQVFFD---------NPWAGGALINEYWVLTAAHVVEGN-------REPTMYVG   64 (259)
T ss_dssp             CSCCSSCC-----CBTCEECCGGGSTTEEEEE---------TTEEEEEEEETTEEEECHHHHTTC-------SSCCEECS
T ss_pred             CcCCCCCCCCCCceECCEECCCCCcceEEEeC---------CceEEEEEEeCCEEEecccccccc-------cceeEEee
Confidence            89888888889999999999999999999983         468999999999999999999763       23456777


Q ss_pred             cccCCcc-CCceEEEeeeEEEeCCCCC---------CCCCceeEEEeCCCCCCCCCceeeeeecCCCC-CCCCCCCcEEE
Q psy16044         94 DWDRTEE-EKSEVRIPVERIRVHEEFH---------NYHHDIALLKLSRPTSARDKGVRAVCLTDADK-RPVNPKQQCVA  162 (436)
Q Consensus        94 ~~~~~~~-~~~~~~~~v~~i~~hp~y~---------~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~-~~~~~~~~~~~  162 (436)
                      ..+.... ....+.+.|.++++||.|.         ...+|||||||++|+. ++..++|+|++.... .....+..+.+
T Consensus        65 ~~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~-~~~~v~pic~~~~~~~~~~~~~~~~~~  143 (259)
T d1elva1          65 STSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVK-MGPTVSPICLPGTSSDYNLMDGDLGLI  143 (259)
T ss_dssp             CSBCC-------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCC-CBTTBCCCBCCCSSGGGCCCTTCEEEE
T ss_pred             eeeeecccccccccccceeEeecceeecccccccCCCcccceeeeeccccee-hhcccCceeeccCccccccccceEEEE
Confidence            6654432 2345678899999999995         2468999999999999 788999999987532 33456788999


Q ss_pred             EecCccCCCCCccccceeeeeeccchhhhhhhcCCC-------cCCcCCeEEeccCCCCCCCccCCCCCeeeeEec--CC
Q psy16044        163 TGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS-------VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK--DG  233 (436)
Q Consensus       163 ~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~-------~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~--~~  233 (436)
                      .||+.+.... ....++...+.+++...|...+...       ....+.++|++...+ .+.|.||+||||++...  .+
T Consensus       144 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~c~gDsGgPl~~~~~~~~~  221 (259)
T d1elva1         144 SGWGRTEKRD-RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKG-MDSCKGDSGGAFAVQDPNDKT  221 (259)
T ss_dssp             EESCCCSSCS-SCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECSTT-CBCCTTCTTCEEEEECSSCTT
T ss_pred             eccccccccc-cccccccceeeEechhhceeeeecccccccccceeecceeeccCCCC-CccCCCCcCCeEEEEecCCCc
Confidence            9999876443 3456888889999999997765321       124567888877554 78999999999999754  35


Q ss_pred             cEEEEEEEeEcCCCCCCCcccccccceecCCccccC
Q psy16044        234 RWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       234 ~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~~~~~~  269 (436)
                      +|+|+||+|||.+ |+.+.+|++|.+|..||.+++.
T Consensus       222 ~~~l~Gi~S~~~~-c~~p~vft~V~~~~~WI~~~i~  256 (259)
T d1elva1         222 KFYAAGLVSWGPQ-CGTYGLYTRVKNYVDWIMKTMQ  256 (259)
T ss_dssp             CEEEEEEEEECSS-TTSEEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEEEEEEeCCC-CCCceEEeEHHHHHHHHHHHHH
Confidence            8999999999987 8889999999999999987763

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=100.00  E-value=1.1e-39  Score=290.78  Aligned_cols=222  Identities=28%  Similarity=0.491  Sum_probs=167.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||+.|.+++|||+|+|.          +.|+||||+++||||||||+....    ....+.|.+|..+....  ..+.
T Consensus         1 ~~gG~~~~~~~~Pw~v~l~----------~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~v~~g~~~~~~~--~~~~   64 (223)
T d1os8a_           1 VVGGTRAAQGEFPFMVRLS----------MGCGGALYAQDIVLTAAHCVSGSG----NNTSITATGGVVDLQSS--SAVK   64 (223)
T ss_dssp             CBSCEECCTTSSTTEEEET----------TTEEEEEEETTEEEECGGGSSCSE----ECCCCEEEESCSBTTCT--TCEE
T ss_pred             CCCCEECCCCCCCcEEEEe----------ccEeEEEEeCCEEEEChhhccCCC----Ccceeeecccccccccc--cccc
Confidence            6899999999999999983          459999999999999999997531    23557888888765443  3466


Q ss_pred             EeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeecc
Q psy16044        107 IPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH  186 (436)
Q Consensus       107 ~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~  186 (436)
                      +.+..++.|+.++...||||||||++++. +     |+|++..  .....+..+.+.|                      
T Consensus        65 i~~~~i~~~~~~~~~~~DIAllkL~~~~~-~-----~~~~~~~--~~~~~~~~~~~~~----------------------  114 (223)
T d1os8a_          65 VRSTKVLQAPGYNGTGKDWALIKLAQPIN-Q-----PTLKIAT--TTAYNQGTFTVAG----------------------  114 (223)
T ss_dssp             EEEEEEEECTTCSSSSCCCEEEEESSCCC-S-----CCCEECC--SSTTSSSEEEEEE----------------------
T ss_pred             ceeeeeeecccccccceeeeeeeeeeeee-c-----ccccccc--cccccccceEEee----------------------
Confidence            67777777877778889999999998876 2     3344331  1112233344444                      


Q ss_pred             chhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCCcc
Q psy16044        187 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKE  266 (436)
Q Consensus       187 ~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~~~  266 (436)
                                                                                                      
T Consensus       115 --------------------------------------------------------------------------------  114 (223)
T d1os8a_         115 --------------------------------------------------------------------------------  114 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeC
Q psy16044        267 SIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN  346 (436)
Q Consensus       267 ~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~  346 (436)
                                                                               |+........+..++...+++++
T Consensus       115 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
T d1os8a_         115 ---------------------------------------------------------WGANREGGSQQRYLLKANVPFVS  137 (223)
T ss_dssp             ---------------------------------------------------------SSCSSTTCCCCSBCEEEEEEEEC
T ss_pred             ---------------------------------------------------------ccccccccccccccccceeeEeC
Confidence                                                                     44333333335667888999999


Q ss_pred             ccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHH
Q psy16044        347 ISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIR  426 (436)
Q Consensus       347 ~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~  426 (436)
                      .++|+..+.......+..+|.....+..+.|.+|+|+||++..+.++|+|+||.||+..|+..+.|++|+||++|++||+
T Consensus       138 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~G~pl~~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~  217 (223)
T d1os8a_         138 DAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIA  217 (223)
T ss_dssp             HHHHHHHHGGGSCTTTEEEESCTTTCCCBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEEHHHHHHHHH
T ss_pred             HHHhhhhhcCCCccCcceeeeccccCCcCccccccccceEEecCCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHH
Confidence            99998887654333344445444445568999999999999877789999999999999988788999999999999999


Q ss_pred             HHHhh
Q psy16044        427 KQINI  431 (436)
Q Consensus       427 ~~i~~  431 (436)
                      ++|+.
T Consensus       218 ~~~k~  222 (223)
T d1os8a_         218 SAART  222 (223)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            99974

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-39  Score=294.94  Aligned_cols=235  Identities=34%  Similarity=0.645  Sum_probs=175.4

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+....    ....+.+..+.............
T Consensus         1 iigG~~a~~~~~Pw~v~i~~~~------~~~C~GtLIs~~~VLTAAhCv~~~~----~~~~~~v~~~~~~~~~~~~~~~~   70 (254)
T d2bz6h1           1 IVGGKVCPKGECPWQVLLLVNG------AQLCGGTLINTIWVVSAAHCFDKIK----NWRNLIAVLGEHDLSEHDGDEQS   70 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEECSSSEEEECGGGGTTCS----CGGGEEEEESCCBTTCCCSCCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------CEEEEEEEeCCCEEEECcccccCCC----Ccccceeeccceeecccccccee
Confidence            7899999999999999998643      6789999999999999999997642    34557788888777766666777


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCC--CCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~--~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      ..+..++.|+.|.  ...+|||||||++|+. ++..++|+|||...  .........+.+.|||.+..........+...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~DiAll~L~~~v~-~~~~i~picl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (254)
T d2bz6h1          71 RRVAQVIIPSTYVPGTTNHDIALLRLHQPVV-LTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLN  149 (254)
T ss_dssp             EEEEEEEEETTCCTTSCSSCCEEEEESSCCC-CBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEE
T ss_pred             eeeeeeeecccccccccccceeEEEecCccc-ccceEeeeecCccccccccccCCceEEEeccCccCCCCcccccceeee
Confidence            8889999999997  4689999999999999 78889999999742  12233456677788876553322221111111


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceec
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLI  262 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~  262 (436)
                      .                                                                               
T Consensus       150 ~-------------------------------------------------------------------------------  150 (254)
T d2bz6h1         150 V-------------------------------------------------------------------------------  150 (254)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             e-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEE
Q psy16044        263 NGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  342 (436)
Q Consensus       263 ~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~  342 (436)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (254)
T d2bz6h1         151 --------------------------------------------------------------------------------  150 (254)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeCccccc-cc--cCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCc
Q psy16044        343 PLHNISVCR-DK--YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLS  419 (436)
Q Consensus       343 ~~~~~~~C~-~~--~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~  419 (436)
                      .+...+.|. ..  ..........++|.....+....|.||+||||++.. +++|+|+||+||+..|+..+.|++||||+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~-~~~~~lvGi~S~g~~c~~~~~p~vytrv~  229 (254)
T d2bz6h1         151 PRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVS  229 (254)
T ss_dssp             EEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGG
T ss_pred             cccchhhhhhhhhcccccccccccceeeeccCCCcccccCccccceEEcc-CCeEEEEEEEEeCCCCCCCCCCEEEEEHH
Confidence            111111111 00  011112355566766666667899999999999986 78999999999999999888999999999


Q ss_pred             ccHHHHHHHHhhh
Q psy16044        420 FYLPWIRKQINIA  432 (436)
Q Consensus       420 ~~~~WI~~~i~~~  432 (436)
                      .|++||+++|+.+
T Consensus       230 ~~~~WI~~~i~~~  242 (254)
T d2bz6h1         230 QYIEWLQKLMRSE  242 (254)
T ss_dssp             GGHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999999764

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=5.1e-39  Score=288.76  Aligned_cols=220  Identities=34%  Similarity=0.664  Sum_probs=172.3

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+.        .++|+||||+++||||||||+.+.         ..+.+..............
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~--------~~~C~GtLIs~~~VLTaAhCv~~~---------~~~~~~~~~~~~~~~~~~~   63 (235)
T d1tona_           1 IVGGYKCEKNSQPWQVAVIN--------EYLCGGVLIDPSWVITAAHCYSNN---------YQVLLGRNNLFKDEPFAQR   63 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES--------SSEEEEEEEETTEEEECGGGCCSC---------CEEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCeEEEEcC--------CeEEEEEEecCCEEEECceecCCC---------CceEEeeeeeecCCCceeE
Confidence            78999999999999999973        578999999999999999998653         2444544444444444566


Q ss_pred             EeeeEEEeCCCCC-------------CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC
Q psy16044        107 IPVERIRVHEEFH-------------NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD  173 (436)
Q Consensus       107 ~~v~~i~~hp~y~-------------~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~  173 (436)
                      ..+..+..|+.|.             ...+|||||+|++|+. ++..+.|+||+....   .....+.++|||.+...  
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diall~L~~~v~-~~~~i~~i~l~~~~~---~~~~~~~~~g~g~~~~~--  137 (235)
T d1tona_          64 RLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPAD-ITGGVKVIDLPTKEP---KVGSTCLASGWGSTNPS--  137 (235)
T ss_dssp             ECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCC-CCSSCCCCCCCCSCC---CTTCEEEEEESSCSSSS--
T ss_pred             eeeeeeeeeeeceeeeeeecccccccccccceeEEEecCccc-cCCcccccccccccc---cccceeEEEEccccccc--
Confidence            6778888888774             2468999999999999 778899999987422   23455666666643210  


Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcc
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIR  253 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~  253 (436)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (235)
T d1tona_         138 --------------------------------------------------------------------------------  137 (235)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceecCCccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCc
Q psy16044        254 YSHRQPRLINGKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDL  333 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~  333 (436)
                                                                                                  ....
T Consensus       138 ----------------------------------------------------------------------------~~~~  141 (235)
T d1tona_         138 ----------------------------------------------------------------------------EMVV  141 (235)
T ss_dssp             ----------------------------------------------------------------------------SCCC
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0111


Q ss_pred             cccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCC
Q psy16044        334 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYP  412 (436)
Q Consensus       334 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p  412 (436)
                      ...|+.+.+++++.++|+..+..  ...+.++|+....+.++.|.||+||||+++     |+|+||+||+. .|+....|
T Consensus       142 ~~~l~~~~~~~~~~~~C~~~~~~--~~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~-----~~l~Gi~S~g~~~c~~~~~p  214 (235)
T d1tona_         142 SHDLQCVNIHLLSNEKCIETYKD--NVTDVMLCAGEMEGGKDTCAGDSGGPLICD-----GVLQGITSGGATPCAKPKTP  214 (235)
T ss_dssp             CSBCEEEEEEEECGGGCGGGGST--TGGGGEEEEECTTCSCBCCTTCTTCEEEET-----TEEEEEECCCCSSCSCTTCC
T ss_pred             cccceeeeeeeeCHHHHHHHhCC--CCCCCceEeCcCCCCccccCCCcCCeEEEc-----CEEEEEEEeCCCCCCCCCCC
Confidence            34678889999999999998876  457889999877777789999999999984     48999999986 57777789


Q ss_pred             eEEEeCcccHHHHHHHHhhh
Q psy16044        413 DVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       413 ~v~t~V~~~~~WI~~~i~~~  432 (436)
                      .+||||++|++||+++|+++
T Consensus       215 ~vyt~v~~y~~WI~~~i~~~  234 (235)
T d1tona_         215 AIYAKLIKFTSWIKKVMKEN  234 (235)
T ss_dssp             EEEEEGGGGHHHHHHHHHHC
T ss_pred             eEEEEHHHHHHHHHHHHHHC
Confidence            99999999999999999865

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-39  Score=290.67  Aligned_cols=215  Identities=31%  Similarity=0.585  Sum_probs=172.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...         ..+................
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~------~~~C~GtLIs~~~VLTaAhC~~~~---------~~~~~~~~~~~~~~~~~~~   65 (225)
T d1npma_           1 ILEGRECIPHSQPWQAALFQGE------RLICGGVLVGDRWVLTAAHCKKQK---------YSVRLGDHSLQSRDQPEQE   65 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGCCSS---------CEEEESCSBTTC--CCCEE
T ss_pred             CCCCEECCCCCCCCEEEEEECC------cEEEEEEEEcCCEEEEchHhCccc---------cccccccccccccCCCcce
Confidence            7899999999999999997643      688999999999999999999763         1344444333333444466


Q ss_pred             EeeeEEEeCCCCC-----CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCC-Ccccccee
Q psy16044        107 IPVERIRVHEEFH-----NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQ  180 (436)
Q Consensus       107 ~~v~~i~~hp~y~-----~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~-~~~~~l~~  180 (436)
                      ..+..+..||.|.     ...+|||||+|++|+. ++..++|+|||...   ......+.++|||.+.... ..+..|+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~dIAll~L~~~~~-~~~~~~~i~l~~~~---~~~~~~~~~~g~g~~~~~~~~~~~~l~~  141 (225)
T d1npma_          66 IQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSAN-LGDKVKPVQLANLC---PKVGQKCIISGWGTVTSPQENFPNTLNC  141 (225)
T ss_dssp             ECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCC-CSSSSCCCEECSSC---CCTTCEEEEEESSCSSSSSCCCCSBCEE
T ss_pred             eeeeeeEEEEeeeccCcccchhhhhhhhcccccc-cccccccccccccc---ccCCceEEEeccceecCCCCCCCCccEE
Confidence            7778888888664     3679999999999999 78889999999853   3456789999999876443 44677999


Q ss_pred             eeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Ccccccc
Q psy16044        181 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHR  257 (436)
Q Consensus       181 ~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v  257 (436)
                      ..+.+++.+.|++.+...  ..+.++|+....+ .+.|.||+||||+++     |+|+||+|||...|+.   +.+|++|
T Consensus       142 ~~~~~~~~~~C~~~~~~~--~~~~~~C~~~~~~-~~~c~gd~G~pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vyt~V  213 (225)
T d1npma_         142 AEVKIYSQNKCERAYPGK--ITEGMVCAGSSNG-ADTCQGDSGGPLVCD-----GMLQGITSWGSDPCGKPEKPGVYTKI  213 (225)
T ss_dssp             EEEEECCHHHHHHHSTTT--CCTTEEEEECTTC-CBCCTTCTTCEEEET-----TEEEEEEEECCSSSCBTTBCEEEEEH
T ss_pred             EEEEEecHHHHhhhccCC--cCCCEEEecCCCC-CccccCCCCceEEEc-----cEEEEEEEECCCCCCCCCCCEEEEEH
Confidence            999999999999988653  4568999987664 789999999999984     5899999999887743   4589999


Q ss_pred             cceecCCcccc
Q psy16044        258 QPRLINGKESI  268 (436)
Q Consensus       258 ~~~~~~~~~~~  268 (436)
                      .++..||++++
T Consensus       214 ~~~~~WI~~~i  224 (225)
T d1npma_         214 CRYTTWIKKTM  224 (225)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-39  Score=287.50  Aligned_cols=222  Identities=28%  Similarity=0.484  Sum_probs=183.4

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+...      .++|+||||+++||||||||+.+.     ....+.+..+...........+.
T Consensus         1 I~gG~~~~~~~~Pw~v~i~~~~------~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~~~v~~~~~~~~~~~~~~~~   69 (228)
T d1bioa_           1 ILGGREAEAHARPYMASVQLNG------AHLCGGVLVAEQWVLSAAHCLEDA-----ADGKVQVLLGAHSLSQPEPSKRL   69 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEEEETTEEEECGGGGGGC-----SSSCEEEEESCSBSSSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------cEEEEEEEEeCCEEEECceeeecc-----ccceeeeeccccccccCCcceee
Confidence            7899999999999999998743      688999999999999999999774     23456677777666666666788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..|.+++.||.|+  ...+|||||+|++|+. ++..+.|+|+|... .....+..+.+.|||.+...+.....++...+.
T Consensus        70 ~~v~~i~~~~~y~~~~~~~diAll~l~~~~~-~~~~v~p~~l~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~  147 (228)
T d1bioa_          70 YDVLRAVPHPDSQPDTIDHDLLLLQLSEKAT-LGPAVRPLPWQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLP  147 (228)
T ss_dssp             EEEEEEEECTTCCTTCCTTCCEEEEESSCCC-CBTTBCCCCBCCSC-CCCCTTCEEEEEESSCCSTTCCCCSBCEEEEEE
T ss_pred             ccceeeeeeecccCCCcccceehhhccccce-eeeEEeeecccccc-cccccCceEEEecceeecCCCCCCCcceEEEEE
Confidence            8999999999997  4789999999999999 77889999999853 344567888999999988877778889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Cccccccccee
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQPRL  261 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~~  261 (436)
                      +++.+.|...+..... ....+|+....+ .+.|.||+||||+++     |+|+||+|||...|+.   +.+|++|.++.
T Consensus       148 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~gdsG~Pl~~~-----~~LvGi~S~g~~~c~~~~~p~v~t~v~~~~  220 (228)
T d1bioa_         148 VLDRATCNRRTHHDGA-ITERLMCAESNR-RDSCKGDSGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYA  220 (228)
T ss_dssp             EECHHHHHSTTTTTTC-CCTTEEEECCSS-CBCCTTTTTCEEEET-----TEEEEEECCSCCCSSCTTSCEEEEEGGGGH
T ss_pred             EeCHHHHhhhhccccc-ccccceeecccC-CCcccCCcCccEEEc-----CEEEEEEEECCCCCCCCCCCEEEEEHHHHH
Confidence            9999999887754333 234555554443 789999999999984     4899999999887753   46899999999


Q ss_pred             cCCcccc
Q psy16044        262 INGKESI  268 (436)
Q Consensus       262 ~~~~~~~  268 (436)
                      .||++++
T Consensus       221 ~WI~~~i  227 (228)
T d1bioa_         221 AWIDSVL  227 (228)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998754

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-39  Score=287.89  Aligned_cols=217  Identities=26%  Similarity=0.467  Sum_probs=179.3

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...     ......+.++.............
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~------~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~~~~~~~~~~~~~~~~~~~~   69 (225)
T d1a7sa_           1 IVGGRKARPRQFPFLASIQNQG------RHFCGGALIHARFVMTAASCFQSQ-----NPGVSTVVLGAYDLRRRERQSRQ   69 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGC---------CCSEEEEESCSSTTSCCTTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------cEEEEEEEEcCCEEEECeeeeeec-----cccceeeEEeeeecccccccccc
Confidence            7899999999999999997643      688999999999999999999764     34456777777666655555566


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+..++.|+.|+  ...+|||||||++|+. +...++|+||+.. ......+..+.+.|||...........++...+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~DIAll~L~~~i~-~~~~~~~~~l~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~  147 (225)
T d1a7sa_          70 TFSISSMSENGYDPQQNLNDLMLLQLDREAN-LTSSVTILPLPLQ-NATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVT  147 (225)
T ss_dssp             EEEEEEEECSSCBTTTTBSCCEEEEESSCCC-CBTTBCCCCCCCT-TCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEE
T ss_pred             eeeeeeeeeeeccccccccccchhhcCCccc-ccccceeEEeecc-ccccCCCceeEeccccccccccccccceeEEEEE
Confidence            7788889999997  4679999999999999 7788999999875 3445567899999999988777777889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC-CcccccccceecC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV-GIRYSHRQPRLIN  263 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~-~~~y~~v~~~~~~  263 (436)
                      +++.+.|..          ...|+.......+.|.||+||||++.     |+|+||+|||.++|+. +.+|++|.+|.+|
T Consensus       148 ~~~~~~C~~----------~~~~~~~~~~~~~~c~gdsG~Pl~~~-----~~l~Gi~S~~~~~c~~~p~v~t~v~~y~~W  212 (225)
T d1a7sa_         148 VTPEDQCRP----------NNVCTGVLTRRGGICNGDGGTPLVCE-----GLAHGVASFSLGPCGRGPDFFTRVALFRDW  212 (225)
T ss_dssp             ECCGGGSCT----------TEEEEECSSSSCBCCTTCTTCEEEET-----TEEEEEEEEECSSTTSSCEEEEEGGGGHHH
T ss_pred             Eeehhhccc----------ccceeeecccccccccCCCCCCEEEe-----CEEEEEEEECCCCCCCCCCEEEEHHHHHHH
Confidence            999999965          34566666666899999999999984     4799999999998864 5789999999999


Q ss_pred             CccccCCC
Q psy16044        264 GKESIRGA  271 (436)
Q Consensus       264 ~~~~~~~~  271 (436)
                      |++++...
T Consensus       213 I~~~i~~~  220 (225)
T d1a7sa_         213 IDGVLNNP  220 (225)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHCCC
Confidence            99888644

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=100.00  E-value=5.9e-39  Score=285.74  Aligned_cols=218  Identities=28%  Similarity=0.460  Sum_probs=178.0

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+...      .++|+||||+++||||||||+....    ....+.+..+....   ....+.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~------~~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~~~~~~~~~---~~~~~~   67 (222)
T d1eq9a_           1 IVGGKDAPVGKYPYQVSLRLSG------SHRCGASILDNNNVLTAAHCVDGLS----NLNRLKVHVGTNYL---SESGDV   67 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEECSSSEEEECHHHHTTCS----CGGGEEEEESCSBT---TSCCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------CEEEEEEEEeCCEEEECceeccccc----cccceeeecceecc---ccCcce
Confidence            7899999999999999998653      6889999999999999999997642    22334444433322   233467


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..|.++++||.|+  ...+|||||+|++|+. ++..++|+||+...  .......+.++||+.+...+..+..++...+.
T Consensus        68 ~~v~~~~~h~~y~~~~~~~diAll~L~~~~~-~~~~v~pi~l~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  144 (222)
T d1eq9a_          68 YDVEDAVVNKNYDDFLLRNDVALVHLTNPIK-FNDLVQPIKLSTND--EDLESNPCTLTGWGSTRLGGNTPNALQEIELI  144 (222)
T ss_dssp             EEEEEEEECTTCBTTTTBCCCEEEEESSCCC-CBTTBCCCEECSCC--TTCTTSEEEEEECCCSSTTCCCCSBCEEEEEE
T ss_pred             eeeeeEEEeecccccccccceehhhccCCcc-cccccccccccccc--cccccceeEEeeeeeecCCCCCCccceEEEEE
Confidence            8899999999997  4689999999999999 67889999999853  34456789999999988777788889999999


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCC-CCCCcccccccceecC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CGVGIRYSHRQPRLIN  263 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~-C~~~~~y~~v~~~~~~  263 (436)
                      .++...|...+..   ..+.++|++.... .+.|.+|+||||+++     |+|+||+|||..| ++.+.+|++|.+|..|
T Consensus       145 ~~~~~~c~~~~~~---~~~~~~c~~~~~~-~~~c~~d~G~pl~~~-----~~L~GI~s~~~~c~~~~p~vyt~v~~y~~W  215 (222)
T d1eq9a_         145 VHPQKQCERDQWR---VIDSHICTLTKRG-EGACHGDSGGPLVAN-----GAQIGIVSFGSPCALGEPDVYTRVSSFVSW  215 (222)
T ss_dssp             EECHHHHHHHSSS---CCTTEEEECCCTT-CBCCTTCTTCEEEET-----TEEEEEEEECSTTTSSSCEEEEEGGGGHHH
T ss_pred             EechHHhcccccc---ccCcceEeccCCC-CCccccCCcCCEEEc-----CEEEEEEEECCCCCCCCCcEEEEHHHHHHH
Confidence            9999999987653   3458999987554 789999999999984     4799999999874 2345799999999999


Q ss_pred             CccccC
Q psy16044        264 GKESIR  269 (436)
Q Consensus       264 ~~~~~~  269 (436)
                      |++.+.
T Consensus       216 I~~~i~  221 (222)
T d1eq9a_         216 INANLK  221 (222)
T ss_dssp             HHHTSC
T ss_pred             HHHHhc
Confidence            998875

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=291.11  Aligned_cols=229  Identities=35%  Similarity=0.635  Sum_probs=180.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.++||||+|+|++....   ..++|+||||+++||||||||+.....   ....+.+..+.....   ...+.
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~---~~~~C~GtLIs~~~VLTaAhCv~~~~~---~~~~~~~~~~~~~~~---~~~~~   71 (243)
T d2fpza1           1 IVGGQEAPRSKWPWQVSLRVHGPY---WMHFCGGSLIHPQWVLTAAHCVGPDVK---DLAALRVQLREQHLY---YQDQL   71 (243)
T ss_dssp             CBSCEECCTTSCTTEEEEEECSSS---CEEEEEEEEEETTEEEECHHHHCSBCC---CGGGEEEECCCSBTT---TTCCC
T ss_pred             CCCCEECCCCCCCcEEEEEECCCc---ccEEEEEEEEeCCEEEECceeccCCCC---cceeEEEEeeecccc---cccEE
Confidence            789999999999999999765422   267899999999999999999976421   224455555543332   23467


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCC--ccccceeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD--LVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~--~~~~l~~~~  182 (436)
                      +.|.++++||+|.  ...||||||+|++|+. ++..++|+|||... .....+..+.+.+||.......  .+..|+..+
T Consensus        72 ~~i~~i~~hp~~~~~~~~~diAli~L~~~~~-~~~~v~~~~l~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~  149 (243)
T d2fpza1          72 LPVSRIIVHPQFYTAQIGADIALLELEEPVK-VSSHVHTVTLPPAS-ETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVK  149 (243)
T ss_dssp             EEEEEEEECTTCSCTTTSCCCEEEEESSCCC-CCSSSCCCBCCCTT-CCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEE
T ss_pred             EeeeeeeccccccccccccchhhhcccCccc-cceeEEEeecCchh-hccCCCceeEEEecccccCCCcCCCCcEeEEEE
Confidence            8899999999997  4679999999999999 78899999999864 3345678899999998775543  345689999


Q ss_pred             eeccchhhhhhhcCCCc-------CCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC--Ccc
Q psy16044        183 VPLHNISVCRDKYGDSV-------ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV--GIR  253 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~-------~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~--~~~  253 (436)
                      +++++...|+..+....       .....++|.+.  .....|.||+||||++.. +++|+|+||+|+|..||..  +.+
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gdsGgpl~~~~-~~~~~L~Gi~s~~~~~~~~~~p~v  226 (243)
T d2fpza1         150 VPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGN--TRRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGI  226 (243)
T ss_dssp             EEEECHHHHHHHHHTTBCSCTTSCSSCTTEEEECC--SSSBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEE
T ss_pred             EeecCHHHhhhhhhcccccCCccceeeeeeEecCC--CCCCCccCCCCCeEEEee-CCEEEEEEEEEECCCCCCCCCCEE
Confidence            99999999998864211       12345566553  337899999999999975 7899999999999887643  468


Q ss_pred             cccccceecCCccccC
Q psy16044        254 YSHRQPRLINGKESIR  269 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~  269 (436)
                      |++|.+|..||++.++
T Consensus       227 ~t~v~~y~~WI~~~i~  242 (243)
T d2fpza1         227 YTRVTYYLDWIHHYVP  242 (243)
T ss_dssp             EEEGGGGHHHHTTTSC
T ss_pred             EEEHHHHHHHHHHHhC
Confidence            9999999999998876

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=100.00  E-value=1.3e-38  Score=285.28  Aligned_cols=226  Identities=28%  Similarity=0.545  Sum_probs=173.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|++.....+  .++|+||||+++||||||||+..       ...+.+.+|......   ..+.
T Consensus         1 i~~G~~a~~ge~Pw~v~i~~~~~~~~--~~~C~GtLIs~~~VLTaAhC~~~-------~~~~~v~~~~~~~~~---~~~~   68 (230)
T d2hlca_           1 IINGYEAYTGLFPYQAGLDITLQDQR--RVWCGGSLIDNKWILTAAHCVHD-------AVSVVVYLGSAVQYE---GEAV   68 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTSC--EEEEEEEEEETTEEEECHHHHTT-------EEEEEEEESCSBTTC---CSEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEecCCC--eeEEEEEEEeCCEEEEeeecccc-------cccceeecccceecc---cccc
Confidence            78999999999999999987543332  68899999999999999999964       355678888755433   3477


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.|++++.||.|+  ...+|||||+|++++  +...++|+||+......                               
T Consensus        69 ~~v~~i~~hp~y~~~~~~~DiALl~L~~~~--~~~~v~pi~l~~~~~~~-------------------------------  115 (230)
T d2hlca_          69 VNSERIISHSMFNPDTYLNDVALIKIPHVE--YTDNIQPIRLPSGEELN-------------------------------  115 (230)
T ss_dssp             EECSEEEECTTCBTTTTBTCCEEEECSCCC--CCSSCCCCBCCCGGGGG-------------------------------
T ss_pred             eeeEeEEeeecccccccccceeEEEeeccc--ccccceeEEeecccccc-------------------------------
Confidence            8899999999997  467899999998764  55679999997631100                               


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecCC
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLING  264 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~~  264 (436)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (230)
T d2hlca_         116 --------------------------------------------------------------------------------  115 (230)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEe
Q psy16044        265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  344 (436)
Q Consensus       265 ~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~  344 (436)
                                                                     ....+..+.+.|||...   .....++...+..
T Consensus       116 -----------------------------------------------~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~  145 (230)
T d2hlca_         116 -----------------------------------------------NKFENIWATVSGWGQSN---TDTVILQYTYNLV  145 (230)
T ss_dssp             -----------------------------------------------CCCTTCEEEEEESSCCS---SCCCBCEEEEEEE
T ss_pred             -----------------------------------------------ccccceeEEEEeecccc---ccchhhheeeecc
Confidence                                                           00123345566666532   2245678889999


Q ss_pred             eCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCC-CCCCCCeEEEeCcccHH
Q psy16044        345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGC-AKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       345 ~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c-~~~~~p~v~t~V~~~~~  423 (436)
                      ++.+.|.+.+... ...+.++|+... .....|.||+|||+++   +++|+|+||+||+.+| +..+.|.+||||++|++
T Consensus       146 ~~~~~c~~~~~~~-~~~~~~~~~~~~-~~~~~~~gdsGgp~~~---~~~~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~  220 (230)
T d2hlca_         146 IDNDRCAQEYPPG-IIVESTICGDTS-DGKSPCFGDSGGPFVL---SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMD  220 (230)
T ss_dssp             ECHHHHHTTSCTT-SSCTTEEEECCT-TSCBCCTTCTTCEEEE---GGGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHH
T ss_pred             ccchhhhhccccc-cccccceEeccc-cCccccccccCCCeEE---CCCeEEEEEEEEeCCCCCCCCCCeEEEEhHHhHH
Confidence            9999998876553 346778887554 4468999999999998   4578999999998753 45577999999999999


Q ss_pred             HHHHHHhhh
Q psy16044        424 WIRKQINIA  432 (436)
Q Consensus       424 WI~~~i~~~  432 (436)
                      ||+++|+..
T Consensus       221 WI~~~~~~~  229 (230)
T d2hlca_         221 WIQQNTGIK  229 (230)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHhCCC
Confidence            999999754

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=100.00  E-value=4.4e-39  Score=287.51  Aligned_cols=217  Identities=30%  Similarity=0.542  Sum_probs=179.1

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|..++|||+|+|+...      .++|+||||+++||||||||+...       ....+++|...........+.
T Consensus         1 i~gG~~a~~~~~Pw~V~i~~~~------~~~C~GtLIs~~~VLTaAhCv~~~-------~~~~~~~g~~~~~~~~~~~~~   67 (226)
T d1azza_           1 IVGGVEAVPNSWPHQAALFIDD------MYFCGGSLISPEWILTAAHCMDGA-------GFVDVVLGAHNIREDEATQVT   67 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------TEEEEEEEEETTEEEECHHHHTTC-------SCEEEEESCSBSSSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------cEEEEEEEeeCCEEEEChhhccCC-------cceEEEeccceeccCCcceEE
Confidence            7899999999999999998643      689999999999999999999653       445678888877776777788


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCC-Cccccceeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRV  183 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~-~~~~~l~~~~~  183 (436)
                      ..+.++++||+|+  ...+|||||+|++|+. ++..++|+|++...   ......+.++|||.+.... .....|+...+
T Consensus        68 ~~v~~i~~~~~y~~~~~~~diAll~l~~~~~-~~~~~~pi~l~~~~---~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~  143 (226)
T d1azza_          68 IQSTDFTVHENYNSFVISNDIAVIRLPVPVT-LTAAIATVGLPSTD---VGVGTVVTPTGWGLPSDSALGISDVLRQVDV  143 (226)
T ss_dssp             EEECCEEECTTCBTTTTBSCCEEEECSSCCC-CCSSSCCCBCCSSC---CCTTCEEEEEESSCSSTTCSSSCSBCEECCE
T ss_pred             EEeeeeeeccccccccccchhhhhhcCCccc-eeeccccccccccc---cccccceeeecccccCCCcCccccEeEEEEE
Confidence            9999999999997  4689999999999999 78899999999853   3456788999999887543 34567999999


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC-C--CCcccccccce
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC-G--VGIRYSHRQPR  260 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C-~--~~~~y~~v~~~  260 (436)
                      .+++.+.|...+....   +.++|..... ..+.|.||+||||+++     |+|+||+|||..+| .  .+.+|++|..|
T Consensus       144 ~~~~~~~C~~~~~~~~---~~~~~~~~~~-~~~~c~gdsG~Pl~~~-----~~l~Gi~S~g~~~~~~~~~p~v~t~v~~y  214 (226)
T d1azza_         144 PIMSNADCDAVYGIVT---DGNICIDSTG-GKGTCNGDSGGPLNYN-----GLTYGITSFGAAAGCEAGYPDAFTRVTYF  214 (226)
T ss_dssp             EEECHHHHHHHHSCCC---TTEEEECCTT-TCBCCTTCTTCEEEET-----TEEEEEEEEEETTCTTSCCCEEEEESGGG
T ss_pred             EEEeHHHhhhhhCccc---ccceeccccC-CCccccCCcCCCEEEc-----CEEEEEEEEeCCCCCCCCCCEEEEEHHHh
Confidence            9999999999886432   2445544333 3789999999999874     47999999998864 3  45689999999


Q ss_pred             ecCCccccC
Q psy16044        261 LINGKESIR  269 (436)
Q Consensus       261 ~~~~~~~~~  269 (436)
                      ..||++.+.
T Consensus       215 ~~WI~~~~g  223 (226)
T d1azza_         215 LDWIQTQTG  223 (226)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999988764

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.7e-38  Score=286.05  Aligned_cols=230  Identities=29%  Similarity=0.539  Sum_probs=184.8

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|++....  ...++|+||||+++||||||||+...       ....|.+|.............
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~~~--~~~~~C~GtLIs~~~VLTaAhCv~~~-------~~~~v~~g~~~~~~~~~~~~~   71 (240)
T d1gvkb_           1 VVGGTEAQRNSWPSQISLQYRSGS--SWAHTCGGTLIRQNWVMTAAHCVDRE-------LTFRVVVGEHNLNQNNGTEQY   71 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETT--EEEEEEEEEEEETTEEEECGGGGCSC-------CCEEEEESCSBTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCEEEEEEEecCC--ccceEEEEEEEeCCEEEECccccccc-------CCceEEeeeeecccccccccc
Confidence            789999999999999999876532  22578999999999999999999763       334678887776655544444


Q ss_pred             EeeeEEEeCCC--CC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEE--FH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~--y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      ......++|+.  ++  ...+|||||+|++|+. +...++|+||+.... .........+.||+.+.........|+...
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~diAll~l~~~~~-~~~~~~p~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~  149 (240)
T d1gvkb_          72 VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVT-LNSYVQLGVLPRAGT-ILANNSPCYITGWGLTRTNGQLAQTLQQAY  149 (240)
T ss_dssp             EEEEEEEECTTCCTTCGGGCCCCEEEEESSCCC-CBTTBCCCCCCCTTC-CCCTTCCEEEEESCBSSTTCCBCSBCEEEE
T ss_pred             ccccceeEEEeecccccccCcceeeecccCccc-ccccccceeeccCcc-ccccccceeEeccccccccccccceeeEEE
Confidence            44444555444  44  4689999999999999 788899999998643 344567788899999887777778899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCC-CC---CCccccccc
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG---VGIRYSHRQ  258 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~-C~---~~~~y~~v~  258 (436)
                      +.+++...|...........+.++|+..... .+.|.||+||||++.. +++|+|+||+||+..+ |+   .+.+|++|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~c~gDsG~pl~~~~-~~~~~lvGI~S~~~~~~c~~~~~p~vyt~v~  227 (240)
T d1gvkb_         150 LPTVDYAICSSSSYWGSTVKNSMVCAGGDGV-RSGCQGDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVS  227 (240)
T ss_dssp             CCEECHHHHTSTTTTGGGCCTTEEEECCSSS-CBCCTTCTTCEEEEEE-TTEEEEEEEEEECBTTBSSCTTCCEEEEEGG
T ss_pred             EEEEcHHHhcceeccCCccCCceEEecCCCC-CccccCccccceEEEE-CCEEEEEEEEEEcCCCCCCCCCCCEEEEEHH
Confidence            9999999998888766667789999987554 7899999999999984 7899999999999763 43   357999999


Q ss_pred             ceecCCccccC
Q psy16044        259 PRLINGKESIR  269 (436)
Q Consensus       259 ~~~~~~~~~~~  269 (436)
                      ++.+||++++.
T Consensus       228 ~~~~WI~~~i~  238 (240)
T d1gvkb_         228 AYISWINNVIA  238 (240)
T ss_dssp             GSHHHHHHHHH
T ss_pred             HhHHHHHHHHh
Confidence            99999987653

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=2.8e-38  Score=284.01  Aligned_cols=228  Identities=29%  Similarity=0.585  Sum_probs=184.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|+.++|||+|+|++.....  ..++|+||||+++||||||||+...       ....+.++.............
T Consensus         1 iigG~~~~~~~~Pw~v~i~~~~~~~--~~~~C~GtLIs~~~VLTaAhCv~~~-------~~~~v~~~~~~~~~~~~~~~~   71 (236)
T d1elta_           1 VVGGRVAQPNSWPWQISLQYKSGSS--YYHTCGGSLIRQGWVMTAAHCVDSA-------RTWRVVLGEHNLNTNEGKEQI   71 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETTE--EEEEEEEEEEETTEEEECHHHHSSC-------CCEEEEESCSBTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCcEEEEEEccCCc--ceeEEEEEEEeCCEEEECeeecccc-------ccceeeccceeeecccCCcee
Confidence            7899999999999999998765322  2578999999999999999998763       445677777666666666677


Q ss_pred             EeeeEEEeCCCCCC----CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~~----~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      ..+..+.+||.|+.    ..+|||||+|++|+. ++..++|||||... ........+++.|||...........++...
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~diall~l~~~~~-~~~~~~picL~~~~-~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~  149 (236)
T d1elta_          72 MTVNSVFIHSGWNSDDVAGGYDIALLRLNTQAS-LNSAVQLAALPPSN-QILPNNNPCYITGWGKTSTGGPLSDSLKQAW  149 (236)
T ss_dssp             ECEEEEEECTTCCTTCGGGCCCCEEEEESSCCC-CSSSCCCCCCCCTT-CCCCTTCCEEEEESCCSSTTCCCCSBCEEEE
T ss_pred             eeeeEEEEeeeecccccccCceEEEeeccCcce-eecccceeecCchh-cccCCCceEEEecccccccCcccCccceeee
Confidence            78888888888862    468999999999999 78889999999863 3345677899999999887777778899999


Q ss_pred             eeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC-CCCC---Cccccccc
Q psy16044        183 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-YCGV---GIRYSHRQ  258 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~-~C~~---~~~y~~v~  258 (436)
                      +.+++.++|.............++|+....  .+.|.||+||||++.. +++|+|+||+||+.+ .|+.   +.+|++|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~gdsGgpl~~~~-~~~~~l~GI~s~~~~~~c~~~~~p~vyt~v~  226 (236)
T d1elta_         150 LPSVDHATCSSSGWWGSTVKTTMVCAGGGA--NSGCNGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVS  226 (236)
T ss_dssp             CCEECHHHHTSTTTTGGGSCTTEEEECCSS--CBCCTTCTTCEEEEEE-TTEEEEEEEEEECCSSCTTCTTCCEEEEEGG
T ss_pred             eEEEcHHHhhhhcccccccceeeeecCCcc--ccccccccccceEEEE-CCeEEEEEEEEEeCCCCCCCCCCCEEEEEHH
Confidence            999999999887665555555666665433  6789999999999985 689999999999764 3533   57899999


Q ss_pred             ceecCCcccc
Q psy16044        259 PRLINGKESI  268 (436)
Q Consensus       259 ~~~~~~~~~~  268 (436)
                      +|..||++++
T Consensus       227 ~y~~WI~~vi  236 (236)
T d1elta_         227 AYISWMNGIM  236 (236)
T ss_dssp             GGHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998753

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=100.00  E-value=3.1e-37  Score=276.90  Aligned_cols=226  Identities=30%  Similarity=0.546  Sum_probs=168.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCc-eE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKS-EV  105 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~-~~  105 (436)
                      |+||++|..++|||+|+|+...      .++|+|+||+++||||||||+...       .  .+.+........... ..
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~------~~~C~G~LIs~~~VLTaAhCv~~~-------~--~~~~~~~~~~~~~~~~~~   65 (234)
T d1op0a_           1 VIGGNECDINEHRFLVAFFNTT------GFFCGGTLINPEWVVTAAHCDSTD-------F--QMQLGVHSKKVLNEDEQT   65 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT------EEEEEEEEEETTEEEECGGGCCSS-------C--EEEESCSCSSSCCTTCEE
T ss_pred             CCCCEECCCCCcCcEEEEEECC------cEEEEEEEEcCCEEEECceeCCCC-------C--ccccceeeccccCCccee
Confidence            7899999999999999998643      689999999999999999998653       1  222333222222222 23


Q ss_pred             EEeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeee
Q psy16044        106 RIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  183 (436)
Q Consensus       106 ~~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~  183 (436)
                      .......+.|+.|+  ...+|||||||++|+. ++.+++|+|||...   ...+..+.++||+.....            
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~DiaLl~L~~~v~-~~~~i~picl~~~~---~~~~~~~~~~g~~~~~~~------------  129 (234)
T d1op0a_          66 RNPKEKFICPNKNNNEVLDKDIMLIKLDKPIS-NSKHIAPLSLPSSP---PSVGSVCRIMGWGSITPV------------  129 (234)
T ss_dssp             ECEEEEEECTTCCTTCTTSSCCEEEEESSCCC-CBTTBCCCCCCSSC---CCTTCEEEEEESSCSSSS------------
T ss_pred             eeeeeeccccccccccccchhhhhhhcCCcee-ccceeecccccccC---cccceEEEEeeecccccc------------
Confidence            33445667788886  4689999999999998 67889999998742   234567777777632200            


Q ss_pred             eccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCCcccccccceecC
Q psy16044        184 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLIN  263 (436)
Q Consensus       184 ~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~~~y~~v~~~~~~  263 (436)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (234)
T d1op0a_         130 --------------------------------------------------------------------------------  129 (234)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEE
Q psy16044        264 GKESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  343 (436)
Q Consensus       264 ~~~~~~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~  343 (436)
                                                                                        .......++...+.
T Consensus       130 ------------------------------------------------------------------~~~~~~~~~~~~~~  143 (234)
T d1op0a_         130 ------------------------------------------------------------------KETFPDVPYCANIN  143 (234)
T ss_dssp             ------------------------------------------------------------------SCCCCSSCEEEEEE
T ss_pred             ------------------------------------------------------------------ccccccccccccce
Confidence                                                                              01113457788899


Q ss_pred             eeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCCeEEEeCcccH
Q psy16044        344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYL  422 (436)
Q Consensus       344 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p~v~t~V~~~~  422 (436)
                      +++.++|...+... .....++|.....+..+.|.||+|+||+++     ++|+||+||+. .|+....|.+||||++|+
T Consensus       144 ~~~~~~C~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~G~Pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vft~v~~y~  217 (234)
T d1op0a_         144 LLDHAVCQAGYPEL-LAEYRTLCAGIVQGGKDTCGGDSGGPLICN-----GQFQGIVSYGAHPCGQGPKPGIYTNVFDYT  217 (234)
T ss_dssp             EECHHHHHHHCTTC-CTTSCEEEEECTTCCCBCCTTCTTCEEEET-----TEEEEEEEECCSSTTCTTSCEEEEESGGGH
T ss_pred             EechHHhcccccCc-ceeeeeeeecccccccccccCCCCceEEEc-----CEEEEEEEEcCCCCCCCCCCeEEEEHHHHH
Confidence            99999999887553 234566666666666789999999999984     36999999985 587777899999999999


Q ss_pred             HHHHHHHhhhhhc
Q psy16044        423 PWIRKQINIAVDE  435 (436)
Q Consensus       423 ~WI~~~i~~~~~~  435 (436)
                      +||+++|+.+.+.
T Consensus       218 ~WI~~~i~~~~~~  230 (234)
T d1op0a_         218 DWIQRNIAGNTDA  230 (234)
T ss_dssp             HHHHHHHHTCTTC
T ss_pred             HHHHHHHhhcCCC
Confidence            9999999877653

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-38  Score=279.40  Aligned_cols=212  Identities=29%  Similarity=0.528  Sum_probs=172.7

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|.+++|||+|+|+...      .++|+||||+++||||||||+...     ....+.+.++.......... ..
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~------~~~C~G~LIs~~~VLTaAhC~~~~-----~~~~~~v~~~~~~~~~~~~~-~~   68 (218)
T d2z7fe1           1 IVGGRRARPHAWPFMVSLQLRG------GHFCGATLIAPNFVMSAAHCVANV-----NVRAVRVVLGAHNLSRREPT-RQ   68 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECHHHHTTS-----CGGGCEEEESCSBTTSCCTT-CE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------CeEEEEEEEeCCEEEECeEecccc-----cccceeeeeeeccccccccc-ee
Confidence            7899999999999999998653      678999999999999999999763     34556788887665544333 44


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      +.+..++.|+.|+  ...+|||||+|++|+. ++..++|+|+|..+. .......+.++||+...........|+...++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~diall~l~~~~~-~~~~~~pi~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~  146 (218)
T d2z7fe1          69 VFAVQRIFENGYDPVNLLNDIVILQLNGSAT-INANVQVAQLPAQGR-RLGNGVQCLAMGWGLLGRNRGIASVLQELNVT  146 (218)
T ss_dssp             EEEEEEEEESCCBTTTTBSCCEEEEESSCCC-CSSSCCCCCCCCTTC-CCCTTCEEEEEESSBCSSSCCBCSBCEEEEEE
T ss_pred             eeeeeeEeeeccccccccceEEEeeccccce-eeeeeeeeeeccCcc-ccCCCcEEEEeccceeecccccccceeEEEec
Confidence            5678888999997  4679999999999999 788899999998643 45567889999999988777777789988888


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Cccccccccee
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQPRL  261 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~~  261 (436)
                      +.+ +.|..          .+.|+.......+.|.|||||||+++     |+|+||+||+...|+.   +.+|++|.+|.
T Consensus       147 ~~~-~~c~~----------~~~~~~~~~~~~~~C~gdsG~Pl~~~-----~~l~GI~s~~~~~c~~~~~p~vft~v~~~~  210 (218)
T d2z7fe1         147 VVT-SLCRR----------SNVCTLVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFV  210 (218)
T ss_dssp             EEC-TTCCT----------TSEEEECTTSCCBCCTTCTTCEEEET-----TEEEEEEEEESSSTTCSSSCEEEEEGGGGH
T ss_pred             ccc-cccce----------eeeeeeecCcccCccccccCCCEEEC-----CEEEEEEEEecCCCCCCCcCEEEEEhHHhH
Confidence            776 44543          46777666666789999999999985     4799999999877753   35899999999


Q ss_pred             cCCcccc
Q psy16044        262 INGKESI  268 (436)
Q Consensus       262 ~~~~~~~  268 (436)
                      .||++++
T Consensus       211 ~WI~~~i  217 (218)
T d2z7fe1         211 NWIDSII  217 (218)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998865

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=100.00  E-value=2.1e-37  Score=279.09  Aligned_cols=227  Identities=28%  Similarity=0.547  Sum_probs=184.5

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||+++.+++|||+|+|+....   ...++|+||||+++||||||||+...     ....+.+..|..+..... ..+.
T Consensus         1 i~gG~~~~~~e~Pw~v~l~~~~~---~~~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~~~v~~~~~~~~~~~-~~~~   71 (241)
T d1m9ua_           1 VIGGTNASPGEFPWQLSQQRQSG---SWSHSCGASLLSSTSALSASHCVDGV-----LPNNIRVIAGLWQQSDTS-GTQT   71 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESS---SEEEEEEEEECSSSEEEECHHHHTTC-----CGGGEEEEESCSBTTCCT-TCEE
T ss_pred             CCCCEECCCCCCCCEEEEEEeCC---CccEEEEEEEEeCCEEEEChhhcccc-----cCceeeEEEEeeeccccc-cccc
Confidence            78999999999999999987642   22678999999999999999998653     356678888876655433 4577


Q ss_pred             EeeeEEEeCCCCCC----CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeee
Q psy16044        107 IPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR  182 (436)
Q Consensus       107 ~~v~~i~~hp~y~~----~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  182 (436)
                      +.|+.+++||.|+.    ..+|||||+|++|+. ++..+.|+|++... .....+..+.+.||+........+..++.+.
T Consensus        72 ~~v~~~~~h~~~~~~~~~~~~diall~l~~~~~-~~~~~~pi~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  149 (241)
T d1m9ua_          72 ANVDSYTMHENYGAGTASYSNDIAILHLATSIS-LGGNIQAAVLPANN-NNDYAGTTCVISGWGRTDGTNNLPDILQKSS  149 (241)
T ss_dssp             EEEEEEEECTTTTCSSSTTTTCCEEEEESSCCC-CCSSCCCCCCCSCS-SCCCTTCEEEEEESSCSSSSSCCCSBCEEEE
T ss_pred             ccceeeeeeeeeccccccccccceeeeccceee-eeeceeeeeeeccc-cccccceEEEEeecccccCCCCCCCcceEEE
Confidence            88999999999972    568999999999999 78889999999763 3455788999999999887777788899999


Q ss_pred             eeccchhhhhhhcCCC--cCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcC----CCCC--CCccc
Q psy16044        183 VPLHNISVCRDKYGDS--VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS----GYCG--VGIRY  254 (436)
Q Consensus       183 ~~~~~~~~C~~~~~~~--~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~----~~C~--~~~~y  254 (436)
                      +++++.++|+..+...  .......+|........+.|.||+||||++.  +++|+|+||+|++.    ++|.  .+.+|
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~--~~~~~l~Gi~s~~~~~g~~~~~~~~p~vf  227 (241)
T d1m9ua_         150 IPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCP--DGGTRVVGVTSWVVSSGLGACLPDYPSVY  227 (241)
T ss_dssp             EEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEE--SSSEEEEEEEEECCBCTTSCBCTTSCEEE
T ss_pred             EEeechhHhhhhhhcccccccccceeEeecccCCcCcccCCCCcceEEe--cCCEEEEEEEEEEEcCCCCCCCCCCCEEE
Confidence            9999999999887442  2234566676666666889999999999985  56789999998654    3554  35689


Q ss_pred             ccccceecCCcc
Q psy16044        255 SHRQPRLINGKE  266 (436)
Q Consensus       255 ~~v~~~~~~~~~  266 (436)
                      ++|.+|..||.+
T Consensus       228 t~V~~y~~WI~~  239 (241)
T d1m9ua_         228 TRVSAYLGWIGD  239 (241)
T ss_dssp             EEGGGTHHHHHH
T ss_pred             EEHHHhHHHHHH
Confidence            999999999974

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=1.9e-37  Score=278.77  Aligned_cols=140  Identities=28%  Similarity=0.512  Sum_probs=99.2

Q ss_pred             cccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEeeCccccccccCCCccC
Q psy16044        282 LSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVEL  360 (436)
Q Consensus       282 ~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  360 (436)
                      +|||||||++|+.++.. ++|+|||....   ..+..+.+.|||...... ..+..|+.+.+++++.+.|++.+..  ..
T Consensus        95 ~Diali~L~~pv~~~~~-v~p~~l~~~~~---~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~--~~  168 (237)
T d1gvza_          95 HDLMLLRLAQPARITDA-VKILDLPTQEP---KLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPE--KM  168 (237)
T ss_dssp             TCCEEEEESSCCCCBTT-BCCCCCCSSCC---CTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECGGGGCSSCGG--GC
T ss_pred             cceEEEEECCceecccc-ccccccccccc---ccceeEEEEeeeeeccccccccceeeEEEEEeecHHHHHhhccc--cc
Confidence            34444444444444443 44455443322   334455555555443222 2345689999999999999998765  35


Q ss_pred             CCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHHHHHHHHhhh
Q psy16044        361 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       361 ~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~WI~~~i~~~  432 (436)
                      .+.++|.....+....|.||+||||+++     ++|+||.||+.. |+..+.|.+||||++|++||+++|+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~gdsG~pl~~~-----~~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~WI~~~i~~~  236 (237)
T d1gvza_         169 TEFVLCATHRDDSGSICLGDSGGALICD-----GVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIEKN  236 (237)
T ss_dssp             CTTEEEEECSSTTCEECGGGTTCEEEET-----TEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHHHH
T ss_pred             ccccccceecccccccccCCCCCcEEEc-----CEEEEEEEeccCCCCCCCCCeEEEEHHHHHHHHHHHHHhc
Confidence            6677777666666789999999999984     279999999974 666677999999999999999999875

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=274.95  Aligned_cols=215  Identities=30%  Similarity=0.479  Sum_probs=171.4

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||++|+.++|||+|+|+......   .++|+||||+++||||||||+...     ....+.|.+|.......... +.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~---~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~~~v~~g~~~~~~~~~~-~~   71 (221)
T d1fuja_           1 IVGGHEAQPHSRPYMASLQMRGNPG---SHFCGGTLIHPSFVLTAAHCLRDI-----PQRLVNVVLGAHNVRTQEPT-QQ   71 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBTT---CCCEEEEEEETTEEEECGGGGSSS-----CGGGEEEEESCSBTTSCCTT-CE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCC---CEEEEEEEEeCCEEEEeeEEEeec-----CCccceeeeecccccccccc-ce
Confidence            7899999999999999998754321   578999999999999999999764     34567888888665554433 55


Q ss_pred             EeeeEEEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeee
Q psy16044        107 IPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP  184 (436)
Q Consensus       107 ~~v~~i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~  184 (436)
                      ..+..++.||.|+  ...+|||||+|++|+. ++.+++|+|||..+ .....+..+++.||+.....+.....|+...+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~diAll~L~~~~~-~~~~v~picl~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~  149 (221)
T d1fuja_          72 HFSVAQVFLNNYDAENKLNDILLIQLSSPAN-LSASVATVQLPQQD-QPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVT  149 (221)
T ss_dssp             EEEEEEEEECCCBTTTTBCCCEEEEESSCCC-CCSSCCCCBCCCTT-CCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEE
T ss_pred             eeeeeeEEEeeecCCCCccEEEEEEcccccc-ccceEEEEEecccc-cccCCCceEEEecccccccccccCccceeeeee
Confidence            6788999999997  4679999999999999 78899999999864 445678899999999988777777788888887


Q ss_pred             ccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CCccccccccee
Q psy16044        185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VGIRYSHRQPRL  261 (436)
Q Consensus       185 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~~~y~~v~~~~  261 (436)
                      +.+...|.           ...|........+.|.||+||||+++     ++|+||+||+...|+   .+.+|++|.+|+
T Consensus       150 ~~~~~~~~-----------~~~~~~~~~~~~~~c~gd~G~pl~~~-----~~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~  213 (221)
T d1fuja_         150 VVTFFCRP-----------HNICTFVPRRKAGICFGDSGGPLICD-----GIIQGIDSFVIWGCATRLFPDFFTRVALYV  213 (221)
T ss_dssp             EECTTCCT-----------TEEEEECSSSSCBCCTTCTTCEEEET-----TEEEEEEEECSSSTTCSSSCEEEEEGGGGH
T ss_pred             eeeecccc-----------ccceeccccCCCceeCCccCCCEEEe-----CEEEEEEEEEECCCCCCCCCeEEEEHHHhH
Confidence            77654332           23333334455899999999999985     379999999975453   356899999999


Q ss_pred             cCCcccc
Q psy16044        262 INGKESI  268 (436)
Q Consensus       262 ~~~~~~~  268 (436)
                      .||++.+
T Consensus       214 ~WI~~~i  220 (221)
T d1fuja_         214 DWIRSTL  220 (221)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.1e-38  Score=280.77  Aligned_cols=220  Identities=34%  Similarity=0.616  Sum_probs=179.0

Q ss_pred             CCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccC--CceEEEeeeEEEe
Q psy16044         37 AWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEE--KSEVRIPVERIRV  114 (436)
Q Consensus        37 ~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~--~~~~~~~v~~i~~  114 (436)
                      .|||+|+|+++...  ...++|+||||+++||||||||+.+.       ....+.+|........  ...+...|.++++
T Consensus         1 ~~PW~v~l~~~~~~--~~~~~C~GtLIs~~~VLTaAhCv~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~   71 (232)
T d1fona_           1 SWSWQVSLQYEKDG--AFHHTCGGSLIAPDWVVTAGHCISTS-------RTYQVVLGEYDRSVLEGSEQVIPINAGDLFV   71 (232)
T ss_dssp             CEEEEEEEEEEETT--EEEEEECCEEEETTEEEECGGGCCTT-------SCEEEEEEEEETTEEEEEEEEEEECTTSEEE
T ss_pred             CCccEEEEEEeCCC--ceEEEEEEEEecCCEEEEChhhccCC-------CceEEEEEeccccccccccccccceeEEEEE
Confidence            49999999887532  23679999999999999999999763       3456666665544322  2345667999999


Q ss_pred             CCCCCC----CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhh
Q psy16044        115 HEEFHN----YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  190 (436)
Q Consensus       115 hp~y~~----~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~  190 (436)
                      ||+|+.    ..+|||||+|++|+. ++..++|+|++.... ....+..+++.||+.....+..+..++...+.+++.+.
T Consensus        72 hp~~~~~~~~~~~diAll~l~~~~~-~~~~~~pic~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
T d1fona_          72 HPLWNSNCVACGNDIALVKLSRSAQ-LGDKVQLANLPPAGD-ILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEH  149 (232)
T ss_dssp             CTTCCTTCGGGCCCCEEEECSSCCC-CTTSCCCCBCCCTTC-CCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHH
T ss_pred             ccCccccccccccceeeeecccceE-EeecceeeecCcccc-cCCCCceeEeeccccccCCCCCCCcceEEEEEEEcHHH
Confidence            999973    459999999999999 788899999998643 34567788999999988777778889999999999999


Q ss_pred             hhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCC-CCC---CcccccccceecCCcc
Q psy16044        191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CGV---GIRYSHRQPRLINGKE  266 (436)
Q Consensus       191 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~-C~~---~~~y~~v~~~~~~~~~  266 (436)
                      |.+........++.++|+....  ...|.||+||||++...+++|+|+||+||+.+. |+.   +.+|++|..|..||++
T Consensus       150 ~~~~~~~~~~~~~~~~c~~~~~--~~~~~gdsGgpl~~~~~~~~~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~  227 (232)
T d1fona_         150 CSQWDWWGITVKKTMVCAGGDT--RSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDE  227 (232)
T ss_dssp             HTSTTTTGGGCCTTEEEECCSS--SCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHH
T ss_pred             hhhhhccCceeeeceeeecccc--ccccccCCCCceEEEccCCCEEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHH
Confidence            9988766666777899987544  678999999999998788999999999998764 753   4689999999999987


Q ss_pred             ccC
Q psy16044        267 SIR  269 (436)
Q Consensus       267 ~~~  269 (436)
                      .+.
T Consensus       228 ~i~  230 (232)
T d1fona_         228 TIA  230 (232)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-38  Score=291.72  Aligned_cols=225  Identities=24%  Similarity=0.360  Sum_probs=155.2

Q ss_pred             cccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeee
Q psy16044         31 KESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVE  110 (436)
Q Consensus        31 ~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~  110 (436)
                      +.++.++|||+|+|++.....+  .++|+||||+++||||||||+...    .....+.|.+|...        +...++
T Consensus         9 ~~t~~~e~PW~v~i~~~~~~~~--~~~C~GtLIs~~~VLTAAhCv~~~----~~~~~~~v~~g~~~--------~~~~v~   74 (287)
T d1rrka1           9 KGTDYHKQPWQAKISVIRPSKG--HESCMGAVVSEYFVLTAAHCFTVD----DKEHSIKVSVGGEK--------RDLEIE   74 (287)
T ss_dssp             TCCHHHHSTTEEEEEECC--CC--CEEEEEEECSSSEEEECGGGCCTT----CCGGGEEEEETTCS--------SCEEEE
T ss_pred             CCCCcCCCCCEEEEEEEECCCC--cEEEEEEEecCCEEEEChhheecC----CCcceEEEEeCCee--------ceeeeE
Confidence            4567789999999987654332  689999999999999999999653    23456788888643        336789


Q ss_pred             EEEeCCCCCC-----------CCCceeEEEeCCCCCCCCCceeeeeecCCCC----CCCCCCCcEEEEecCccCCC----
Q psy16044        111 RIRVHEEFHN-----------YHHDIALLKLSRPTSARDKGVRAVCLTDADK----RPVNPKQQCVATGWGRVKPK----  171 (436)
Q Consensus       111 ~i~~hp~y~~-----------~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~----~~~~~~~~~~~~GwG~~~~~----  171 (436)
                      ++++||+|+.           ..||||||||++|+. ++.+|+|||||....    ........+...+|+.....    
T Consensus        75 ~i~~Hp~y~~~~~~~~~~~~~~~~DIALl~L~~~~~-~s~~v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (287)
T d1rrka1          75 VVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK-YGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKA  153 (287)
T ss_dssp             EEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCC-CBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEE
T ss_pred             EEEecCCccccccccccCCCcccccEEEEecccCcc-ccceEEEEecCCccccccccccCCcceEeecCceeecCCCccc
Confidence            9999999962           458999999999999 778999999997421    11111111122223222111    


Q ss_pred             ---CCccccceeeeeeccchhhh---hhhcC--C--------CcCCcCCeEEeccCCC--CCCCccCCCCCeeeeEecCC
Q psy16044        172 ---GDLVSKLRQIRVPLHNISVC---RDKYG--D--------SVELHGGHLCGGQLDG--FSGACIGDSGGPLQCSLKDG  233 (436)
Q Consensus       172 ---~~~~~~l~~~~~~~~~~~~C---~~~~~--~--------~~~~~~~~~Ca~~~~~--~~~~C~gDsGgPl~~~~~~~  233 (436)
                         ......++...+.+.+...|   .....  .        ....++.||||+...+  ..++|.|||||||++. .++
T Consensus       154 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~-~~~  232 (287)
T d1rrka1         154 LFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRS  232 (287)
T ss_dssp             EEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEE-ETT
T ss_pred             cccccCCceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCCCCCCCccCCeEEe-cCC
Confidence               11234456666666655443   22211  0        1234578999975443  3578999999999997 478


Q ss_pred             cEEEEEEEeEcCCC-CC-----------CCcccccccceecCCccccCCC
Q psy16044        234 RWYLAGITSFGSGY-CG-----------VGIRYSHRQPRLINGKESIRGA  271 (436)
Q Consensus       234 ~~~l~GI~S~g~~~-C~-----------~~~~y~~v~~~~~~~~~~~~~~  271 (436)
                      +|+|+||+|||... |.           .+.+|++|..|..||++.+.+.
T Consensus       233 ~~~lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~~~  282 (287)
T d1rrka1         233 RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  282 (287)
T ss_dssp             EEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTTS
T ss_pred             eEEEEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhcCC
Confidence            99999999998542 32           2357999999999999888754

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.1e-36  Score=266.13  Aligned_cols=92  Identities=36%  Similarity=0.634  Sum_probs=75.2

Q ss_pred             cccceEEEEEeeCccccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCC
Q psy16044        334 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYP  412 (436)
Q Consensus       334 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p  412 (436)
                      +..|+...+++++.++|++.+..  ...+.++|+....+....|.+|+|+||+++     ++|+||+|||. .|+....|
T Consensus       135 ~~~l~~~~~~~~~~~~C~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~G~pl~~~-----~~l~Gv~S~g~~~c~~~~~p  207 (228)
T d1sgfa_         135 PDDLQCVNLKLLPNEDCDKAHEM--KVTDAMLCAGEMDGGSYTCEHDSGGPLICD-----GILQGITSWGPEPCGEPTEP  207 (228)
T ss_dssp             -----CEEEEEECTHHHHTTCSS--BCCTTEEEEEECSSSEEECCCCTTCEEEET-----TEEEEEECCCCSSCCCSSCC
T ss_pred             CCccEEEEEEEeCHHHhhhhccC--CcccceEEeccCCCCccccCCCcCCcEEEe-----CEEEEEEEECCCCCCCCCCC
Confidence            45688999999999999987765  356778888777766789999999999984     37999999986 68777889


Q ss_pred             eEEEeCcccHHHHHHHHhhh
Q psy16044        413 DVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       413 ~v~t~V~~~~~WI~~~i~~~  432 (436)
                      ++||||++|++||+++|+.+
T Consensus       208 ~vyt~V~~~~~WI~~~i~~n  227 (228)
T d1sgfa_         208 SVYTKLIKFSSWIRETMANN  227 (228)
T ss_dssp             EEEEESGGGHHHHHHHHHSC
T ss_pred             eEEEEHHHHHHHHHHHHhHC
Confidence            99999999999999999864

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=6.5e-27  Score=211.30  Aligned_cols=156  Identities=31%  Similarity=0.609  Sum_probs=135.8

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|......+||||++|.+|+.++.. ++||||+.... ....+..+.+.||+....++.....++...+.+++.++|
T Consensus        93 ~h~~y~~~~~~~diali~l~~pi~~~~~-~~pi~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C  170 (251)
T d1pytd_          93 VHEKWNSFLVRNDIALIKLAETVELGDT-IQVACLPSEGS-LLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATC  170 (251)
T ss_dssp             ECTTCBTTTTBSCCEEEEESSCCCCCSS-CCCCBCCCTTC-CCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHHHH
T ss_pred             EeeeecccccCCceeeeecCCCcccCce-eEEEEeecccc-CCCCceeEEEecCccccCCCcccceeceeeccccCHHHH
Confidence            3899999899999999999999999998 99999998876 455788899999998887766677888899999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      .+.+.........++|+..... .+.|.||+||||++.. +++|+|+||+||+.  .|+..+.|.+||||++|++||+++
T Consensus       171 ~~~~~~~~~~~~~~~c~~~~~~-~~~c~gd~G~Pl~~~~-~~~~~L~Gi~S~~~~~~c~~~~~p~vyt~v~~y~~WI~~~  248 (251)
T d1pytd_         171 SQRDWWGTTVKETMVCAGGDGV-ISACNGDSGGPLNCQA-DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQK  248 (251)
T ss_dssp             TSTTTTTTTCCTTEEEECCSCS-SCCCCSCTTCEEEEES-SSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHH
T ss_pred             hhhhcccccccCceEEeccCCC-CccccCCCCCceEEee-CCEEEEEEEEEECCCCCCCCCCCCeEEEEHHHhHHHHHHh
Confidence            9877655567888999976543 5899999999999985 78999999999986  476677899999999999999999


Q ss_pred             Hh
Q psy16044        429 IN  430 (436)
Q Consensus       429 i~  430 (436)
                      |+
T Consensus       249 i~  250 (251)
T d1pytd_         249 LQ  250 (251)
T ss_dssp             TT
T ss_pred             cc
Confidence            86

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=207.68  Aligned_cols=156  Identities=33%  Similarity=0.613  Sum_probs=140.8

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|+.....+|||||+|+.|+.+... ++|||||.... .......+...||+...........|+...+++++.+.|
T Consensus        85 ~Hp~y~~~~~~~diAll~L~~~~~~~~~-~~~i~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C  162 (241)
T d1eaxa_          85 SHPFFNDFTFDYDIALLELEKPAEYSSM-VRPICLPDASH-VFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTC  162 (241)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCBTT-BCCCBCCCTTC-CCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCHHHH
T ss_pred             ECCcccccccCCcccccccCCceecCcc-cceeecccccc-ccccceeEEEeccCCccccccccccceEEEEEEeCHHHH
Confidence            4899999999999999999999999888 99999997665 556788999999998877666677899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      ++.+..  .+..+++|++...+....|.||+||||++...+++|+|+||+||+..|+..+.|.+|+||++|++||+++++
T Consensus       163 ~~~~~~--~~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~g  240 (241)
T d1eaxa_         163 ENLLPQ--QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             HHHSTT--TCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             HHHhCc--cccCccceeccCCCCcccccCcccceeEEEcCCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            999876  467899999887777789999999999998778999999999999999888889999999999999999885

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.5e-26  Score=205.28  Aligned_cols=156  Identities=29%  Similarity=0.626  Sum_probs=138.2

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.+......+|||||+|++|+.++.. ++|||||.... ....+..+.++||+...........|+...+.+.+.+.|
T Consensus        80 ~hp~~~~~~~~~diAli~L~~~v~~~~~-~~picLp~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~  157 (235)
T d1ekbb_          80 INPHYNKRRKNNDIAMMHLEMKVNYTDY-IQPICLPEENQ-VFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKC  157 (235)
T ss_dssp             ECTTCBTTTTBSCCEEEEESSCCCCCSS-CCCCBCCCTTC-CCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEBCCHHHH
T ss_pred             ecccccccCccchhhhhhhcCceecCCc-eeeEECCCccc-cCCcceEEEEecccccccCCcccccceeeEEEEecHHHh
Confidence            4899999999999999999999999988 99999998765 456789999999999877666677899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      ....... ...+.++|+....+..+.|.||+||||++.. +++|+|+||.||+..|+....|.+||||.+|++||+++|+
T Consensus       158 ~~~~~~~-~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~-~~~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~  235 (235)
T d1ekbb_         158 QQQMPEY-NITENMVCAGYEAGGVDSCQGDSGGPLMCQE-NNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH  235 (235)
T ss_dssp             HHHCTTS-CCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ccccccc-ccCcccEEEEcCCCCcccccCCCCCccEEcc-CCEEEEEEEEEecCCCCCCCCCEEEEEHHHHHHHHHHhhC
Confidence            8776553 4678899998877767899999999999985 7899999999999999888889999999999999998873

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.3e-26  Score=201.76  Aligned_cols=147  Identities=33%  Similarity=0.658  Sum_probs=125.6

Q ss_pred             CCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEeeCcccc
Q psy16044        272 WPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       272 ~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~~C  350 (436)
                      |+.+......+|||||+|++|+.+... ++|+|||....   .....+.++|||...... ..+..|+.+.+++++.++|
T Consensus        77 ~~~~~~~~~~~dIAll~L~~~~~~~~~-~~~i~l~~~~~---~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C  152 (225)
T d1npma_          77 YNNSNPEDHSHDIMLIRLQNSANLGDK-VKPVQLANLCP---KVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKC  152 (225)
T ss_dssp             CCSSCTTCCTTCCEEEEESSCCCCSSS-SCCCEECSSCC---CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHH
T ss_pred             eeccCcccchhhhhhhhcccccccccc-ccccccccccc---cCCceEEEeccceecCCCCCCCCccEEEEEEEecHHHH
Confidence            456666778899999999999999888 99999997765   667899999999765433 4467899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC-CCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG-CAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~-c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      ++.+..  .++++++|+....+ ...|.||+||||+++     |+|+||.|||.. |+..+.|++||||.+|++||+++|
T Consensus       153 ~~~~~~--~~~~~~~C~~~~~~-~~~c~gd~G~pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i  224 (225)
T d1npma_         153 ERAYPG--KITEGMVCAGSSNG-ADTCQGDSGGPLVCD-----GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM  224 (225)
T ss_dssp             HHHSTT--TCCTTEEEEECTTC-CBCCTTCTTCEEEET-----TEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHH
T ss_pred             hhhccC--CcCCCEEEecCCCC-CccccCCCCceEEEc-----cEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence            998866  57899999976544 689999999999983     489999999965 777778999999999999999988


Q ss_pred             h
Q psy16044        430 N  430 (436)
Q Consensus       430 ~  430 (436)
                      +
T Consensus       225 ~  225 (225)
T d1npma_         225 D  225 (225)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7e-25  Score=195.40  Aligned_cols=159  Identities=33%  Similarity=0.563  Sum_probs=135.7

Q ss_pred             CCCCcccccc--cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCc
Q psy16044        270 GAWPWQNLIT--SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI  347 (436)
Q Consensus       270 ~~~p~~~~~~--~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~  347 (436)
                      ..||.|+...  ..+|||||+|++|+.++.. ++|||++.... ....+..+.+.||+........+..++...+++++.
T Consensus        70 ~~hp~~~~~~~~~~~diAll~l~~~~~~~~~-~~pic~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
T d1fona_          70 FVHPLWNSNCVACGNDIALVKLSRSAQLGDK-VQLANLPPAGD-ILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDY  147 (232)
T ss_dssp             EECTTCCTTCGGGCCCCEEEECSSCCCCTTS-CCCCBCCCTTC-CCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECH
T ss_pred             EEccCccccccccccceeeeecccceEEeec-ceeeecCcccc-cCCCCceeEeeccccccCCCCCCCcceEEEEEEEcH
Confidence            3588887654  4599999999999999998 99999997766 456677899999998877666778899999999999


Q ss_pred             cccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcccHHHH
Q psy16044        348 SVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       348 ~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~~~~WI  425 (436)
                      +.|.+.......+...++|+...  ....|.||+||||++...+++|+|+||.||+.  +|+..+.|++||||++|++||
T Consensus       148 ~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~gdsGgpl~~~~~~~~~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI  225 (232)
T d1fona_         148 EHCSQWDWWGITVKKTMVCAGGD--TRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWI  225 (232)
T ss_dssp             HHHTSTTTTGGGCCTTEEEECCS--SSCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHH
T ss_pred             HHhhhhhccCceeeeceeeeccc--cccccccCCCCceEEEccCCCEEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHH
Confidence            99998876655678889998653  35789999999999987788999999999985  476667899999999999999


Q ss_pred             HHHHhhh
Q psy16044        426 RKQINIA  432 (436)
Q Consensus       426 ~~~i~~~  432 (436)
                      +++|+++
T Consensus       226 ~~~i~~~  232 (232)
T d1fona_         226 DETIASN  232 (232)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHcC
Confidence            9999864

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.1e-25  Score=195.75  Aligned_cols=153  Identities=30%  Similarity=0.538  Sum_probs=132.3

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|...+..+|||||+|.+|+.+... ++|||+|.... ....+..+.++|||........++.|+.+.+++++.++|
T Consensus        74 ~hp~y~~~~~~~diAll~l~~~~~~~~~-~~~i~l~~~~~-~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~C  151 (232)
T d1orfa_          74 PYPCYDPATREGDLKLLQLTEKAKINKY-VTILHLPKKGD-DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVC  151 (232)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCSSS-SCCCCCCSSCC-CCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHH
T ss_pred             ecccccccccCcceeEeeeccceeeeee-Eeeeeeccccc-ccccCceeeeccccccCCcccCChhheEEEeecCCHHHH
Confidence            4899999999999999999999999988 99999997776 556789999999998877666678899999999999999


Q ss_pred             ccccC--CCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCc-ccHHHH
Q psy16044        351 RDKYG--DSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLS-FYLPWI  425 (436)
Q Consensus       351 ~~~~~--~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~-~~~~WI  425 (436)
                      +..+.  ....+.++++|++........|.||+||||+++     ++|+||+|||.  .|+....|++||||+ +|++||
T Consensus       152 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~-----~~l~GI~S~g~~~~c~~~~~p~vyt~Vs~~y~~WI  226 (232)
T d1orfa_         152 NDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE-----GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI  226 (232)
T ss_dssp             TSTTTTTTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEET-----TEEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHH
T ss_pred             hhhhhcccCccccCceEEeccCCCCcccccccCCCeEEEc-----CEEEEEEEEECCCCCCCCCCCcEEEEeeHHHHHHH
Confidence            87643  223467899999887777789999999999984     37999999985  477777899999997 799999


Q ss_pred             HHHHh
Q psy16044        426 RKQIN  430 (436)
Q Consensus       426 ~~~i~  430 (436)
                      +++|+
T Consensus       227 ~~~i~  231 (232)
T d1orfa_         227 IMTIK  231 (232)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99986

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=7.4e-25  Score=194.54  Aligned_cols=151  Identities=28%  Similarity=0.510  Sum_probs=131.7

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.+......+||||++|.+|+.++.. |+|||++.... ....+..+.+.|||........+..++...+.+++.++|
T Consensus        77 ~~~~~~~~~~~~diall~l~~~i~~~~~-v~picl~~~~~-~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~c  154 (227)
T d1fi8a_          77 PHPAYNSKTISNDIMLLKLKSKAKRSSA-VKPLNLPRRNV-KVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKC  154 (227)
T ss_dssp             ECTTCBTTTTBSCCEEEEESSCCCCCSS-CCCCCCCCTTC-CCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCHHHH
T ss_pred             ecccccCccccchhhhhhccCceeeeee-EEEEEecccCc-ccCCCCEEEEEeeccccCCCCCCceeeEEEEEEEEchhh
Confidence            4899999999999999999999999998 99999998775 456788999999998887777788999999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      ...+... .....++|+.........|.||+||||+++     ++|+||+|||..|+  +.|.+||||++|++||+++|+
T Consensus       155 ~~~~~~~-~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~-----~~l~Gi~S~g~~~~--~~p~vyt~v~~y~~WI~~~i~  226 (227)
T d1fi8a_         155 ESYLKNY-FDKANEICAGDPKIKRASFRGDSGGPLVCK-----KVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTMK  226 (227)
T ss_dssp             HHHTTTT-CCTTTEEEESCTTSCCBCCTTCTTSEEEET-----TEEEEEEEEEETTC--CSCEEEEEGGGGHHHHHHHHC
T ss_pred             hhhhhcc-cccceeeeeeeccccCCCcCCCcCCEEEEC-----CEEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHHc
Confidence            9887654 346677887777766789999999999984     47999999998885  459999999999999999997


Q ss_pred             h
Q psy16044        431 I  431 (436)
Q Consensus       431 ~  431 (436)
                      +
T Consensus       227 ~  227 (227)
T d1fi8a_         227 K  227 (227)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.1e-24  Score=193.33  Aligned_cols=155  Identities=26%  Similarity=0.459  Sum_probs=129.6

Q ss_pred             CCCccccc---ccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCc
Q psy16044        271 AWPWQNLI---TSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI  347 (436)
Q Consensus       271 ~~p~~~~~---~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~  347 (436)
                      .||.|+..   ...+|||||+|++|+.++.. ++|||++.... ....+..+.+.|||....  ..+..++...+.+++.
T Consensus        79 vhp~y~~~~~~~~~~DiAll~L~~pi~~~~~-v~pi~l~~~~~-~~~~~~~~~~~g~g~~~~--~~~~~~~~~~~~~~~~  154 (240)
T d2qy0b1          79 VHPDYRQDESYNFEGDIALLELENSVTLGPN-LLPICLPDNDT-FYDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANP  154 (240)
T ss_dssp             ECTTCCTTCSSCCTTCCEEEEESSCCCCBTT-BCCCBCCCSGG-GGCTTCEEEEEECCCCSS--SCCSBCEEEEEEBCCH
T ss_pred             eccccccccccccCCCceEEecCCccccccc-cceEEeccccc-ccccCceeeecccccccc--cccccceEEEEEEcCH
Confidence            48888765   35689999999999999988 99999998765 455788999999998653  3467788999999999


Q ss_pred             cccccccCC---CccCCCCceecccCCCCCCCccCCCCceeeeEec-CCcEEEEEEEEecCCCCCCCCCeEEEeCcccHH
Q psy16044        348 SVCRDKYGD---SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLP  423 (436)
Q Consensus       348 ~~C~~~~~~---~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~-~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~  423 (436)
                      +.|+..+..   ...+.++++|+.........|.||+|+||++..+ .++|+|+||+||+.+|+.  .|.+||||++|++
T Consensus       155 ~~C~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S~g~~c~~--~p~vft~v~~~~~  232 (240)
T d2qy0b1         155 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVD  232 (240)
T ss_dssp             HHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHH
T ss_pred             HHHHHHhhccccCCceecceEEeccCCccceeeccccccceEEEeCCCCeEEEEEEEEECCCCCC--CCeEEEEHHHHHH
Confidence            999976522   2236789999987777778999999999999863 458999999999999874  3899999999999


Q ss_pred             HHHHHHhh
Q psy16044        424 WIRKQINI  431 (436)
Q Consensus       424 WI~~~i~~  431 (436)
                      ||+++|++
T Consensus       233 WI~~~i~~  240 (240)
T d2qy0b1         233 WIKKEMEE  240 (240)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHhcC
Confidence            99999974

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-24  Score=190.38  Aligned_cols=149  Identities=28%  Similarity=0.528  Sum_probs=127.6

Q ss_pred             CCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccc
Q psy16044        270 GAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       270 ~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~  349 (436)
                      ..||.|...+..+|||||+|+.++.++.. ++|+|||....   .....+.++|||..... ..+..|+...+++++.++
T Consensus        72 ~~~p~y~~~~~~~diAll~l~~~~~~~~~-v~pi~l~~~~~---~~~~~~~~~Gwg~~~~~-~~~~~l~~~~~~~~~~~~  146 (221)
T d1lo6a_          72 VIHPDYDAASHDQDIMLLRLARPAKLSEL-IQPLPLERDCS---ANTTSCHILGWGKTADG-DFPDTIQCAYIHLVSREE  146 (221)
T ss_dssp             EECTTCCTTTCTTCCEEEEESSCCCCBTT-BCCCCBCCCTT---CCCCEEEEEESSCCTTS-SCCSBCEEEEEEEECHHH
T ss_pred             ccCCCcccccccceeEEeecccccceeee-EEeccccccCC---cccceEEEEecccccCC-CCCccceEEEEEEecHHH
Confidence            35899999999999999999999999998 99999997654   67889999999987654 456789999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      |++.+..  .+.++++|..........|.||+||||+++.     +|+||+|||. +|+....|.+||||++|++||+++
T Consensus       147 C~~~~~~--~~~~~~~~~~~~~~~~~~c~gd~G~Pl~~~~-----~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~  219 (221)
T d1lo6a_         147 CEHAYPG--QITQNMLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT  219 (221)
T ss_dssp             HHHHSTT--TCCTTEEEEECTTTCCBCCTTTTTCEEEETT-----EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHH
T ss_pred             HHHHcCC--CccCCceeeeccccCCCCccCCCCCcEEECC-----EEEEEEEEccCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence            9999875  3456666665556667899999999999853     6999999986 588778899999999999999999


Q ss_pred             Hh
Q psy16044        429 IN  430 (436)
Q Consensus       429 i~  430 (436)
                      |+
T Consensus       220 ik  221 (221)
T d1lo6a_         220 IQ  221 (221)
T ss_dssp             HC
T ss_pred             hC
Confidence            85

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=190.16  Aligned_cols=148  Identities=32%  Similarity=0.568  Sum_probs=129.5

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.+......+|+||++|+.|+.+... ++|+|||.... .......+...|||..... .....++++.+.+++.++|
T Consensus        76 ~~~~~~~~~~~~diaL~~l~~~~~~~~~-~~pi~l~~~~~-~~~~~~~~~~~g~g~~~~~-~~~~~l~~~~~~~~~~~~C  152 (224)
T d1t32a1          76 RHPQYNQRTIQNDIMLLQLSRRVRRNRN-VNPVALPRAQE-GLRPGTLCTVAGWGRVSMR-RGTDTLREVQLRVQRDRQC  152 (224)
T ss_dssp             ECTTCBTTTTBTCCEEEEESSCCCCBTT-BCCCCCCCTTC-CCCTTCEEEEEESCCSSSS-CCCSBCEEEEEEBCCHHHH
T ss_pred             EeecccccccccceeEEeeccccccCcc-cCccccccccc-cCCCCCEEEEecccccccC-CCcceeeeeeeeecCHHHH
Confidence            5899999999999999999999999888 99999998877 5567889999999976543 3456899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      ++.+..  .+.++++|+.........|.||+||||+++.     +|+||+|||..|+..  |++||||++|++||+++|+
T Consensus       153 ~~~~~~--~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~~-----~l~Gi~S~g~~~~~~--p~vyt~v~~y~~WI~~~i~  223 (224)
T d1t32a1         153 LRIFGS--YDPRRQICVGDRRERKAAFKGDSGGPLLCNN-----VAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             HHHSTT--CCTTTEEEECCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECCTTCCS--CEEEEEGGGSHHHHHHHHC
T ss_pred             HhhcCc--ccccccceeecccccccccccCcCCeEEEcC-----EEEEEEEEcCCCCCC--CcEEEEHHHhHHHHHHHHc
Confidence            998876  4678999998777777899999999999842     799999999888653  9999999999999999987

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.7e-24  Score=192.20  Aligned_cols=156  Identities=24%  Similarity=0.493  Sum_probs=124.5

Q ss_pred             CCCcccc-------cccccccceeecccccccCCCCeeeeccCCCCC-CCCCCCCeEEEEecCCCCCCCCccccceEEEE
Q psy16044        271 AWPWQNL-------ITSFLSAALLKLSRPTSARDKGVRAVCLTDADK-RPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV  342 (436)
Q Consensus       271 ~~p~~~~-------~~~~~diali~l~~~~~~~~~~v~picl~~~~~-~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~  342 (436)
                      .||.|..       ....+|||||||++|+.++.. ++|+|++.... .....+..+.+.||+.+.... ....++...+
T Consensus        86 ~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~-v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~  163 (259)
T d1elva1          86 IHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPT-VSPICLPGTSSDYNLMDGDLGLISGWGRTEKRD-RAVRLKAARL  163 (259)
T ss_dssp             ECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTT-BCCCBCCCSSGGGCCCTTCEEEEEESCCCSSCS-SCSBCEEEEE
T ss_pred             ecceeecccccccCCCcccceeeeecccceehhcc-cCceeeccCccccccccceEEEEeccccccccc-ccccccccee
Confidence            3777753       356799999999999999988 99999987654 345677889999999876543 3557889999


Q ss_pred             EeeCccccccccCCC-------ccCCCCceecccCCCCCCCccCCCCceeeeEec--CCcEEEEEEEEecCCCCCCCCCe
Q psy16044        343 PLHNISVCRDKYGDS-------VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK--DGRWYLAGITSFGSGCAKSGYPD  413 (436)
Q Consensus       343 ~~~~~~~C~~~~~~~-------~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~--~~~~~l~Gi~S~~~~c~~~~~p~  413 (436)
                      .+++...|...+...       ..+.+.++|+.... ....|.||+||||++...  +++|+|+||+||+.+|+.   |.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~c~gDsGgPl~~~~~~~~~~~~l~Gi~S~~~~c~~---p~  239 (259)
T d1elva1         164 PVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---YG  239 (259)
T ss_dssp             EEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSSTTS---EE
T ss_pred             eEechhhceeeeecccccccccceeecceeeccCCC-CCccCCCCcCCeEEEEecCCCcEEEEEEEEEeCCCCCC---ce
Confidence            999999997654221       23577788887654 368999999999999863  458999999999998853   89


Q ss_pred             EEEeCcccHHHHHHHHhhh
Q psy16044        414 VYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       414 v~t~V~~~~~WI~~~i~~~  432 (436)
                      +||||++|++||+++|+++
T Consensus       240 vft~V~~~~~WI~~~i~~~  258 (259)
T d1elva1         240 LYTRVKNYVDWIMKTMQEN  258 (259)
T ss_dssp             EEEEGGGGHHHHHHHHHHT
T ss_pred             EEeEHHHHHHHHHHHHHhc
Confidence            9999999999999999875

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5e-24  Score=191.14  Aligned_cols=156  Identities=33%  Similarity=0.679  Sum_probs=129.7

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCC--ccccceEEEEEeeCcc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGD--LVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~--~~~~l~~~~~~~~~~~  348 (436)
                      .||.|......+|||||+|++|+.++.. ++|+|||.... ....+..+.+.+||.......  .+..|+.+++++++.+
T Consensus        79 ~hp~~~~~~~~~diAli~L~~~~~~~~~-v~~~~l~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~  156 (243)
T d2fpza1          79 VHPQFYTAQIGADIALLELEEPVKVSSH-VHTVTLPPASE-TFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENH  156 (243)
T ss_dssp             ECTTCSCTTTSCCCEEEEESSCCCCCSS-SCCCBCCCTTC-CCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHH
T ss_pred             ccccccccccccchhhhcccCcccccee-EEEeecCchhh-ccCCCceeEEEecccccCCCcCCCCcEeEEEEEeecCHH
Confidence            5899999999999999999999999888 99999997766 456778899999997765432  3457899999999999


Q ss_pred             ccccccCCC-------ccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCccc
Q psy16044        349 VCRDKYGDS-------VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFY  421 (436)
Q Consensus       349 ~C~~~~~~~-------~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~  421 (436)
                      +|++.+...       ......++|...  .....|.||+||||+++. +++|+|+||+|++..|+..+.|.+||||++|
T Consensus       157 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gdsGgpl~~~~-~~~~~L~Gi~s~~~~~~~~~~p~v~t~v~~y  233 (243)
T d2fpza1         157 ICDAKYHLGAYTGDDVRIVRDDMLCAGN--TRRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYY  233 (243)
T ss_dssp             HHHHHHHTTBCSCTTSCSSCTTEEEECC--SSSBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEEEEEGGGG
T ss_pred             HhhhhhhcccccCCccceeeeeeEecCC--CCCCCccCCCCCeEEEee-CCEEEEEEEEEECCCCCCCCCCEEEEEHHHH
Confidence            998775321       123445666543  335899999999999985 7899999999999999887889999999999


Q ss_pred             HHHHHHHHhh
Q psy16044        422 LPWIRKQINI  431 (436)
Q Consensus       422 ~~WI~~~i~~  431 (436)
                      ++||+++|++
T Consensus       234 ~~WI~~~i~~  243 (243)
T d2fpza1         234 LDWIHHYVPK  243 (243)
T ss_dssp             HHHHTTTSCC
T ss_pred             HHHHHHHhCC
Confidence            9999999874

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.90  E-value=1.3e-23  Score=187.86  Aligned_cols=160  Identities=28%  Similarity=0.537  Sum_probs=136.8

Q ss_pred             CCCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        269 RGAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       269 ~~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      ...||.+......+|||||+|+.|+.+... ++|+||+.... .........+.||+...........++...+.+++.+
T Consensus        79 ~~~~~~~~~~~~~~diAll~l~~~~~~~~~-~~p~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~  156 (240)
T d1gvkb_          79 VHPYWNTDDVAAGYDIALLRLAQSVTLNSY-VQLGVLPRAGT-ILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYA  156 (240)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCBTT-BCCCCCCCTTC-CCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHH
T ss_pred             EEEeecccccccCcceeeecccCccccccc-ccceeeccCcc-ccccccceeEeccccccccccccceeeEEEEEEEcHH
Confidence            345677788888999999999999999888 99999997766 4456677889999988776666788999999999999


Q ss_pred             ccccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC--CCCCCCCeEEEeCcccHHHHH
Q psy16044        349 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG--CAKSGYPDVYTKLSFYLPWIR  426 (436)
Q Consensus       349 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~--c~~~~~p~v~t~V~~~~~WI~  426 (436)
                      .|...........+.++|+.... ....|.||+||||++.. +++|+|+||+||+..  |+..+.|++||||++|++||+
T Consensus       157 ~~~~~~~~~~~~~~~~~c~~~~~-~~~~c~gDsG~pl~~~~-~~~~~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~  234 (240)
T d1gvkb_         157 ICSSSSYWGSTVKNSMVCAGGDG-VRSGCQGDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWIN  234 (240)
T ss_dssp             HHTSTTTTGGGCCTTEEEECCSS-SCBCCTTCTTCEEEEEE-TTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHH
T ss_pred             HhcceeccCCccCCceEEecCCC-CCccccCccccceEEEE-CCEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHH
Confidence            99888776666788999997654 46899999999999985 789999999999864  666677999999999999999


Q ss_pred             HHHhhh
Q psy16044        427 KQINIA  432 (436)
Q Consensus       427 ~~i~~~  432 (436)
                      ++|+.+
T Consensus       235 ~~i~~n  240 (240)
T d1gvkb_         235 NVIASN  240 (240)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            999864

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=99.90  E-value=7.4e-24  Score=187.22  Aligned_cols=148  Identities=32%  Similarity=0.531  Sum_probs=128.6

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|......+|||||+|++|+.++.. ++|+|||....  ......+.+.||+.+......+..++...+..++...|
T Consensus        75 ~h~~y~~~~~~~diAll~L~~~~~~~~~-v~pi~l~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c  151 (222)
T d1eq9a_          75 VNKNYDDFLLRNDVALVHLTNPIKFNDL-VQPIKLSTNDE--DLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQC  151 (222)
T ss_dssp             ECTTCBTTTTBCCCEEEEESSCCCCBTT-BCCCEECSCCT--TCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHH
T ss_pred             EeecccccccccceehhhccCCcccccc-ccccccccccc--ccccceeEEeeeeeecCCCCCCccceEEEEEEechHHh
Confidence            4899999999999999999999999888 99999987654  45667899999998877777788999999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      .+.+..   ..+.++|+.... ..+.|.+|+||||+++     |+|+||+||+.+|+. +.|.+||||++|++||+++|+
T Consensus       152 ~~~~~~---~~~~~~c~~~~~-~~~~c~~d~G~pl~~~-----~~L~GI~s~~~~c~~-~~p~vyt~v~~y~~WI~~~i~  221 (222)
T d1eq9a_         152 ERDQWR---VIDSHICTLTKR-GEGACHGDSGGPLVAN-----GAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             HHHSSS---CCTTEEEECCCT-TCBCCTTCTTCEEEET-----TEEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSC
T ss_pred             cccccc---ccCcceEeccCC-CCCccccCCcCCEEEc-----CEEEEEEEECCCCCC-CCCcEEEEHHHHHHHHHHHhc
Confidence            987654   577899997644 4689999999999984     379999999999975 569999999999999999987


Q ss_pred             h
Q psy16044        431 I  431 (436)
Q Consensus       431 ~  431 (436)
                      +
T Consensus       222 ~  222 (222)
T d1eq9a_         222 K  222 (222)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.90  E-value=5.9e-24  Score=188.31  Aligned_cols=148  Identities=29%  Similarity=0.494  Sum_probs=128.3

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.+......+|||||+|++|+.+... ++|+||+.... ....+..+.+.||+...........|+++.+++++.++|
T Consensus        77 ~~~~~~~~~~~~diall~L~~~v~~~~~-~~p~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C  154 (224)
T d3rp2a_          77 IHESYNSVPNLHDIMLLKLEKKVELTPA-VNVVPLPSPSD-FIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKAC  154 (224)
T ss_dssp             ECTTCCSSSCCSCCEEEEESSCCCCBTT-BCCCCCCCTTC-CCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGT
T ss_pred             ecccccccccccceeeeeecceeEeccc-cceEEeccccc-ccCCCcEEEEeeeeeeecCCCccceeeEEEEEccCHHHh
Confidence            4899999999999999999999999888 99999998765 566788999999998877666677899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      .+.+..   ....++|+.........|.+|+||||+++     ++|+||+|||..|+  +.|.+||||++|++||+++|+
T Consensus       155 ~~~~~~---~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~-----~~l~Gi~S~g~~~~--~~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         155 VDYRYY---EYKFQVCVGSPTTLRAAFMGDSGGPLLCA-----GVAHGIVSYGHPDA--KPPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             TTTTCC---CTTTEEEECCTTSCCBCCTTTTTCEEEET-----TEEEEEEEECCTTC--CSCEEEEEHHHHHHHHHHHHC
T ss_pred             hhcccc---cccceeeeccCcccccCcCCCcCCeEEEc-----CEEEEEEEECCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            987654   46778888777776789999999999984     37999999998765  459999999999999999874

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.8e-23  Score=185.12  Aligned_cols=149  Identities=30%  Similarity=0.528  Sum_probs=127.3

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|......+|||||+|++|+.++.. +.|+|++.... ..+.+..+.+.|||...........++...+.+++.++|
T Consensus        76 ~hp~~~~~~~~~DiAll~L~~~~~~~~~-~~p~~~~~~~~-~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~C  153 (224)
T d1eufa_          76 PHPDYNDETLANDIMLLKLTRKADITDK-VSPINLPRSLA-EVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKC  153 (224)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCCSS-CCCCCCCCTTC-CCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHH
T ss_pred             ECCccccccccccceeeeccceeEEeee-Eeeeeeecccc-cccCCceEEEecccceeccccccccceeeeeccCCHHHH
Confidence            4899999999999999999999999988 99999998766 567788999999999887776778899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      +..+..  .....++|..........|.+|+||||+++     ++|+||.|||.+|+  ..|.+||||++|++||+++|+
T Consensus       154 ~~~~~~--~~~~~~~~~~~~~~~~~~c~~dsGgpl~~~-----~~l~Gi~s~g~~~~--~~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         154 IARFKN--YIPFTQICAGDPSKRKNSFSGDSGGPLVCN-----GVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             HTTCTT--CCTTTEEEESCTTSCCBCCTTCTTCEEEET-----TEEEEEEEECCTTC--CSCEEEEEGGGTHHHHHHHTC
T ss_pred             HHHhcc--ccccceeeeeccccccccccCCCCCeEEEc-----CEEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            988765  334555555555555689999999999984     27999999998875  459999999999999999985

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-24  Score=191.64  Aligned_cols=152  Identities=27%  Similarity=0.448  Sum_probs=128.9

Q ss_pred             CCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccc
Q psy16044        270 GAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       270 ~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~  349 (436)
                      ..||.|+..+..+|||||+|++|+.++.. ++|+||+.... ....+..+.+.|||.+.........++++.+.+++.++
T Consensus        75 ~~~~~~~~~~~~~DiAll~L~~~i~~~~~-v~~~~l~~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~  152 (227)
T d1fq3a_          75 IPHPAYNPKNFSNDIMLLQLERKAKRTRA-VQPLRLPSNKA-QVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRK  152 (227)
T ss_dssp             CCCTTCCTTTTTTCCEEEEESSCCCCCSS-CCCCCCCCSSC-CCCTTCEEECCCSCCSTTTSCCCSBCCBCEEECCCHHH
T ss_pred             EecccCCCCCCCcchhhhhccccccccee-EEEEeeccccc-ccCCCCEEEEEeeccccCcccccccceEEEEEEEcHHH
Confidence            46899999999999999999999999988 99999997766 55678899999999887666667889999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      |++.+... .....++|..........|.||+||||+++     ++|+||+|||..|+.  .|.+||||++|++||+++|
T Consensus       153 C~~~~~~~-~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~-----~~l~GI~s~g~~~~~--~p~vyt~v~~y~~WI~~~i  224 (227)
T d1fq3a_         153 CESDLRHY-YDSTIELCVGDPEIKKTSFKGDSGGPLVCN-----KVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTM  224 (227)
T ss_dssp             HTTTCTTT-CCTTTEECCSCTTSSCBCCTTCTTCBCBSS-----SSCCCEECCCCTTSC--SCCCEECHHHHHHHHHHHT
T ss_pred             hhhhhccc-ccccceeeeeccccccccccCCCCceEEEe-----CEEEEEEEEcCCCCC--CCcEEEEHHHHHHHHHHHH
Confidence            99887653 234445555555566789999999999984     369999999998864  3899999999999999999


Q ss_pred             hh
Q psy16044        430 NI  431 (436)
Q Consensus       430 ~~  431 (436)
                      ++
T Consensus       225 ~~  226 (227)
T d1fq3a_         225 KR  226 (227)
T ss_dssp             TC
T ss_pred             Hh
Confidence            75

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-23  Score=186.58  Aligned_cols=154  Identities=23%  Similarity=0.464  Sum_probs=129.2

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCC-CCccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|......+|+|||+|+.|+.++.. ++|||||....  ......+.+.|||..... ...+..|+...+.+++.++
T Consensus        80 ~h~~~~~~~~~~diAll~l~~~~~~~~~-~~picL~~~~~--~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~  156 (240)
T d1mzaa_          80 PFSRVTSDPQSNDIMLVKLQTAAKLNKH-VKMLHIRSKTS--LRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKL  156 (240)
T ss_dssp             ECCCSSCSSSSSCCEEEEESSCCCCBTT-BCCCCBCSSCC--CCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHH
T ss_pred             eeccccccccCcceEEEeecceeeeeec-ccccccccccc--ccceeeEEEEEeccccCCcCcCCcccEEEEEEEecHHH
Confidence            4899999889999999999999999888 99999987665  345567899999987643 3446789999999999999


Q ss_pred             cccccCC--CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCc-ccHHHHH
Q psy16044        350 CRDKYGD--SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLS-FYLPWIR  426 (436)
Q Consensus       350 C~~~~~~--~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~-~~~~WI~  426 (436)
                      |+.....  .....+.++|+....+..+.|.|||||||+++     ++|+||.||+..|+....|.+||||+ +|++||+
T Consensus       157 C~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~-----~~l~Gi~S~g~~c~~~~~p~vftrvs~~y~~WI~  231 (240)
T d1mzaa_         157 CNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICK-----GVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIK  231 (240)
T ss_dssp             HTSTTTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEET-----TEEEEEECSSCCSSCTTCCEEEEECCHHHHHHHH
T ss_pred             hhhhhhccCCcccccceEEeccCCCCccCccCCCCCeEEEC-----CEEEEEEEeCCCCCCCCCCeEEEEEHHHHHHHHH
Confidence            9876432  22356788999877777789999999999984     37999999999998888899999997 6899999


Q ss_pred             HHHhhh
Q psy16044        427 KQINIA  432 (436)
Q Consensus       427 ~~i~~~  432 (436)
                      ++|+..
T Consensus       232 ~~i~~~  237 (240)
T d1mzaa_         232 SNLVPP  237 (240)
T ss_dssp             HHTCCS
T ss_pred             HHccCC
Confidence            999754

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=99.89  E-value=6.8e-23  Score=182.67  Aligned_cols=154  Identities=29%  Similarity=0.567  Sum_probs=127.5

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .|+.+......+|||||+|++|+.++.. ++|||||.... .......+.+.|||...........++...+.+++.++|
T Consensus        81 ~~~~~~~~~~~~diall~l~~~~~~~~~-~~picL~~~~~-~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (236)
T d1elta_          81 SGWNSDDVAGGYDIALLRLNTQASLNSA-VQLAALPPSNQ-ILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATC  158 (236)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCSSS-CCCCCCCCTTC-CCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHH
T ss_pred             eeecccccccCceEEEeeccCcceeecc-cceeecCchhc-ccCCCceEEEecccccccCcccCccceeeeeEEEcHHHh
Confidence            3445555566789999999999999988 99999998766 556678899999998877666678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC--CCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~--~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      .............++|+...  ....|.||+||||++.. +++|+|+||.||+.  +|+....|.+||||++|++||+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~--~~~~c~gdsGgpl~~~~-~~~~~l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~~v  235 (236)
T d1elta_         159 SSSGWWGSTVKTTMVCAGGG--ANSGCNGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGI  235 (236)
T ss_dssp             TSTTTTGGGSCTTEEEECCS--SCBCCTTCTTCEEEEEE-TTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred             hhhcccccccceeeeecCCc--cccccccccccceEEEE-CCeEEEEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHHHh
Confidence            88776555556666776433  34789999999999986 68999999999974  587777899999999999999987


Q ss_pred             H
Q psy16044        429 I  429 (436)
Q Consensus       429 i  429 (436)
                      |
T Consensus       236 i  236 (236)
T d1elta_         236 M  236 (236)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.4e-23  Score=182.01  Aligned_cols=151  Identities=30%  Similarity=0.435  Sum_probs=127.0

Q ss_pred             CCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccc
Q psy16044        270 GAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       270 ~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~  349 (436)
                      ..||.+...+..+|||||+|.+|+.++.. ++|+|++.... ....+..+...||+........+..++.+.+++++.++
T Consensus        74 ~~~p~~~~~~~~~diall~l~~~~~~~~~-~~pi~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (224)
T d1nn6a_          74 FRHPKYNTSTLHHDIMLLKLKEKASLTLA-VGTLPFPSQFN-FVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQA  151 (224)
T ss_dssp             EECTTCCTTTCTTCCEEEEESSCCCCCSS-CCCCCCCSCCC-CCCTTCEEEEEECCCCSSSCCCCSBCEEEEEEBCCGGG
T ss_pred             EEeecccccccccchhhhcccCCcccccc-ccccccccccc-ccCCCceeeeccccccccCCCccccceEEEEEecCHHH
Confidence            35899999999999999999999999988 99999987766 45567889999999877666677889999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      |++.+..   .....+|+.........|.||+||||++.     |+|+||+||+..|+  +.|.+||||+.|++||+++|
T Consensus       152 C~~~~~~---~~~~~~~~~~~~~~~~~c~gDsG~PL~~~-----~~l~GI~s~g~~~~--~~p~vyt~v~~y~~WI~~~i  221 (224)
T d1nn6a_         152 CSHFRDF---DHNLQLCVGNPRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDA--KPPAVFTRISHYRPWINQIL  221 (224)
T ss_dssp             GTTSTTC---CTTTEEEECCTTTC--CCCCCTTCEEEET-----TEEEEEEEECCTTC--CSCEEEEEHHHHHHHHHHHH
T ss_pred             Hhhhccc---ccceeeeccCccccccccCCCccceEEEC-----CEEEEEEEECCCCC--CCCeEEEEHHHHHHHHHHHH
Confidence            9887654   35667777666665689999999999984     37999999998665  35999999999999999999


Q ss_pred             hhh
Q psy16044        430 NIA  432 (436)
Q Consensus       430 ~~~  432 (436)
                      +.+
T Consensus       222 ~~n  224 (224)
T d1nn6a_         222 QAN  224 (224)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            754

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.89  E-value=5.3e-25  Score=193.75  Aligned_cols=195  Identities=13%  Similarity=0.085  Sum_probs=127.9

Q ss_pred             CCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEe
Q psy16044         35 RGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRV  114 (436)
Q Consensus        35 ~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~  114 (436)
                      ...|||.+.++....     .+.|+|+||+++||||||||+....... ....+.+..+.......   .....+.+++.
T Consensus        14 ~~~~P~~~~~~i~~~-----~~~CsG~LI~~~~VLTaaHCv~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   84 (215)
T d1p3ca_          14 TRVAPYNSIAYITFG-----GSSCTGTLIAPNKILTNGHCVYNTASRS-YSAKGSVYPGMNDSTAV---NGSANMTEFYV   84 (215)
T ss_dssp             TTSTTGGGEEEEECS-----SCEEEEEEEETTEEEECHHHHEETTTTE-ECCCCEEEETCBTTBCT---TCCEEEEEEEC
T ss_pred             CCCCCcEEEEEEEcC-----CeEEEEEEEeCCEEEECcceeccCCCCc-eeeeEEEeccccCCCCC---ceeEEEeEEEE
Confidence            467999877765542     4679999999999999999997643221 22345667765543322   23467889999


Q ss_pred             CCCCC---CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhh
Q psy16044        115 HEEFH---NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  191 (436)
Q Consensus       115 hp~y~---~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C  191 (436)
                      ||.|.   ...+|+|||+|+.++.   ....+++++..   ....+..+.++||+...........+............+
T Consensus        85 ~~~~~~~~~~~~DiAll~l~~~~~---~~~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (215)
T d1p3ca_          85 PSGYINTGASQYDFAVIKTDTNIG---NTVGYRSIRQV---TNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTN  158 (215)
T ss_dssp             CHHHHHHCCGGGCCEEEEESSCHH---HHHCCCCBCCC---SCCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEECSS
T ss_pred             ecccccCCCccceEEEEEeccCCC---ccccccccccc---cccCCceeEEEcCCCCcCCCcccceeeEeeecccccccc
Confidence            99885   4578999999999876   22455555543   344688999999987542211111111211111111111


Q ss_pred             hhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---CcccccccceecCCcc
Q psy16044        192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GIRYSHRQPRLINGKE  266 (436)
Q Consensus       192 ~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~~y~~v~~~~~~~~~  266 (436)
                                    .+.    ...++|.|||||||+.    .+++|+||.|+|.++|..   +.+|+++.+++.||.+
T Consensus       159 --------------~~~----~~~~~~~G~SGgPl~~----~~~~lvGi~s~g~~~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         159 --------------LAY----YTIDTFSGNSGSAMLD----QNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             --------------EEE----ECCCCCTTCTTCEEEC----TTSCEEEECCEEEGGGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             --------------cce----eecccCCCCccCeEEC----CCCEEEEEEEeccCCCCCCCCeEEEeEHHHHHHHHHc
Confidence                          111    1257899999999993    345799999999886543   4578899999999864

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.88  E-value=6e-24  Score=192.95  Aligned_cols=193  Identities=15%  Similarity=0.116  Sum_probs=112.0

Q ss_pred             CeeeEEEEec------CCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCC--------
Q psy16044         55 PHWCGAVLIH------PSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN--------  120 (436)
Q Consensus        55 ~~~C~GtLIs------~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~--------  120 (436)
                      .++|+||||+      ++||||||||+.+.     ......+.++........   ....+.+..+|+.|+.        
T Consensus        33 ~~~CGGsLI~~~~~~~~~~VLTAAHCv~~~-----~~~~~~v~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  104 (263)
T d1arba_          33 TLACTGSLVNNTANDRKMYFLTAHHCGMGT-----ASTAASIVVYWNYQNSTC---RAPNTPASGANGDGSMSQTQSGST  104 (263)
T ss_dssp             EEEEEEEEBCCTTCCCCCEEEEEGGGSCCS-----HHHHHTCEEEESCCCSSC---CCTTSGGGGSCCCCCCCCEEECEE
T ss_pred             cEEEEEEEECCCCCCccceEEEchhhCCCC-----CCcceEEEEEEEeecccc---eeeeeeeeecccCccceeeecchh
Confidence            7999999998      67999999999763     122233444433222211   1123344455666642        


Q ss_pred             -----CCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCcccccee--eeeeccchhhhhh
Q psy16044        121 -----YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ--IRVPLHNISVCRD  193 (436)
Q Consensus       121 -----~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~--~~~~~~~~~~C~~  193 (436)
                           ..+||||++|+.++. ..                   ..+...+|+...........++.  ..+..+....|..
T Consensus       105 l~~~~~~~Diall~l~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (263)
T d1arba_         105 VKATYATSDFTLLELNNAAN-PA-------------------FNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPT  164 (263)
T ss_dssp             EEEEETTTTEEEEEESSCCC-GG-------------------GCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCC
T ss_pred             eeecCCCcceeeeecccccc-cc-------------------cceeeeccCccccCCccccceeccccceeeeecccccc
Confidence                 235566666655554 11                   22234444433322221111111  1222223333322


Q ss_pred             hc-CCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC---C--CCcccccccceecCCccc
Q psy16044        194 KY-GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC---G--VGIRYSHRQPRLINGKES  267 (436)
Q Consensus       194 ~~-~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C---~--~~~~y~~v~~~~~~~~~~  267 (436)
                      .. .........++|+....+..+.|.|||||||++.  ++  .++||+|+|...|   +  .+.+|+||..+..|+...
T Consensus       165 ~~~~~~~~~~~~~~c~~~~~~~~~~c~GDSGGPL~~~--~g--~~vGvvsgg~s~c~~c~~~~p~vYtrV~~~~~~~~~~  240 (263)
T d1arba_         165 SFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSP--EK--RVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGGAA  240 (263)
T ss_dssp             EEECTTSSSCSSEEEEECCTTSCCCCTTCTTCEEECT--TS--CEEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTTSSG
T ss_pred             hhhccCCCCCccEEEEEecCCCccccCCCCcceEEec--CC--CEEEEEEEEEeCCcCCCCCCCceEEEEEEeeccCCcc
Confidence            22 1223344689999988877889999999999974  33  3899999997655   2  356899998887788777


Q ss_pred             cCCCCCcccccc
Q psy16044        268 IRGAWPWQNLIT  279 (436)
Q Consensus       268 ~~~~~p~~~~~~  279 (436)
                      +.+-.+|.++.+
T Consensus       241 ~~~l~~wl~p~~  252 (263)
T d1arba_         241 ASRLSDWLDPAS  252 (263)
T ss_dssp             GGCSHHHHCTTC
T ss_pred             hhhhhceeCCCC
Confidence            777667765543

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=99.88  E-value=1.5e-22  Score=179.43  Aligned_cols=148  Identities=32%  Similarity=0.603  Sum_probs=122.9

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCC-CccccceEEEEEeeCccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~~  349 (436)
                      .||.|......+|||||+|++|+.++.. ++|+||+....   .....+.++|||...... .....|+...+++++.++
T Consensus        75 ~~~~y~~~~~~~diAll~l~~~~~~~~~-~~pi~l~~~~~---~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~  150 (226)
T d1azza_          75 VHENYNSFVISNDIAVIRLPVPVTLTAA-IATVGLPSTDV---GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNAD  150 (226)
T ss_dssp             ECTTCBTTTTBSCCEEEECSSCCCCCSS-SCCCBCCSSCC---CTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHH
T ss_pred             eccccccccccchhhhhhcCCccceeec-ccccccccccc---ccccceeeecccccCCCcCccccEeEEEEEEEEeHHH
Confidence            4899999999999999999999999988 99999998765   677889999999876543 345679999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCC-CCCCCeEEEeCcccHHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCA-KSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~-~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      |+..+..   ..+.+.|.... ..++.|.||+||||+++     ++|+||+||+..|+ ..+.|++||||++|++||+++
T Consensus       151 C~~~~~~---~~~~~~~~~~~-~~~~~c~gdsG~Pl~~~-----~~l~Gi~S~g~~~~~~~~~p~v~t~v~~y~~WI~~~  221 (226)
T d1azza_         151 CDAVYGI---VTDGNICIDST-GGKGTCNGDSGGPLNYN-----GLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ  221 (226)
T ss_dssp             HHHHHSC---CCTTEEEECCT-TTCBCCTTCTTCEEEET-----TEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHH
T ss_pred             hhhhhCc---ccccceecccc-CCCccccCCcCCCEEEc-----CEEEEEEEEeCCCCCCCCCCEEEEEHHHhHHHHHHH
Confidence            9998865   23444444333 34689999999999874     37999999998765 456799999999999999999


Q ss_pred             Hhh
Q psy16044        429 INI  431 (436)
Q Consensus       429 i~~  431 (436)
                      |+.
T Consensus       222 ~g~  224 (226)
T d1azza_         222 TGI  224 (226)
T ss_dssp             HCC
T ss_pred             hCC
Confidence            975

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-22  Score=176.50  Aligned_cols=144  Identities=26%  Similarity=0.478  Sum_probs=121.7

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|......+|||||+|++|+.+... ++|+||+.... ....+..+.++|||...........++...+.+++.+.|
T Consensus        77 ~~~~~~~~~~~~DIAll~L~~~i~~~~~-~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C  154 (225)
T d1a7sa_          77 SENGYDPQQNLNDLMLLQLDREANLTSS-VTILPLPLQNA-TVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQC  154 (225)
T ss_dssp             ECSSCBTTTTBSCCEEEEESSCCCCBTT-BCCCCCCCTTC-CCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGS
T ss_pred             eeeeccccccccccchhhcCCccccccc-ceeEEeecccc-ccCCCceeEeccccccccccccccceeEEEEEEeehhhc
Confidence            4788888899999999999999999888 99999987665 566778999999998877666678899999999999999


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHHHHh
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN  430 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~~i~  430 (436)
                      ....          .|..........|.||+||||+++     |+|+||.||+.+|+. ..|.+||||++|++||+++|+
T Consensus       155 ~~~~----------~~~~~~~~~~~~c~gdsG~Pl~~~-----~~l~Gi~S~~~~~c~-~~p~v~t~v~~y~~WI~~~i~  218 (225)
T d1a7sa_         155 RPNN----------VCTGVLTRRGGICNGDGGTPLVCE-----GLAHGVASFSLGPCG-RGPDFFTRVALFRDWIDGVLN  218 (225)
T ss_dssp             CTTE----------EEEECSSSSCBCCTTCTTCEEEET-----TEEEEEEEEECSSTT-SSCEEEEEGGGGHHHHHHHHH
T ss_pred             cccc----------ceeeecccccccccCCCCCCEEEe-----CEEEEEEEECCCCCC-CCCCEEEEHHHHHHHHHHHHC
Confidence            7543          344344455689999999999984     379999999987765 459999999999999999998


Q ss_pred             hh
Q psy16044        431 IA  432 (436)
Q Consensus       431 ~~  432 (436)
                      ..
T Consensus       219 ~~  220 (225)
T d1a7sa_         219 NP  220 (225)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-22  Score=177.52  Aligned_cols=152  Identities=27%  Similarity=0.471  Sum_probs=127.7

Q ss_pred             CCCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccc
Q psy16044        270 GAWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  349 (436)
Q Consensus       270 ~~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~  349 (436)
                      ..||.|+.....+|||||+|++|+.++.. ++|+|||.... ....+..+.+.|||........+..++...+++++.++
T Consensus        76 ~~~~~y~~~~~~~diAll~l~~~~~~~~~-v~p~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~  153 (228)
T d1bioa_          76 VPHPDSQPDTIDHDLLLLQLSEKATLGPA-VRPLPWQRVDR-DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRAT  153 (228)
T ss_dssp             EECTTCCTTCCTTCCEEEEESSCCCCBTT-BCCCCBCCSCC-CCCTTCEEEEEESSCCSTTCCCCSBCEEEEEEEECHHH
T ss_pred             eeeecccCCCcccceehhhccccceeeeE-Eeeeccccccc-ccccCceEEEecceeecCCCCCCCcceEEEEEEeCHHH
Confidence            35899999999999999999999999988 99999997766 55678889999999887777777889999999999999


Q ss_pred             cccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCCeEEEeCcccHHHHHHH
Q psy16044        350 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQ  428 (436)
Q Consensus       350 C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p~v~t~V~~~~~WI~~~  428 (436)
                      |...+... ......+|.... .....|.||+|+||+++     |+|+||+||+. .|+..+.|.+||||.+|++||+++
T Consensus       154 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~gdsG~Pl~~~-----~~LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~  226 (228)
T d1bioa_         154 CNRRTHHD-GAITERLMCAES-NRRDSCKGDSGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSV  226 (228)
T ss_dssp             HHSTTTTT-TCCCTTEEEECC-SSCBCCTTTTTCEEEET-----TEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHH
T ss_pred             Hhhhhccc-ccccccceeecc-cCCCcccCCcCccEEEc-----CEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHH
Confidence            98876543 234555666443 34589999999999984     37999999985 587777899999999999999998


Q ss_pred             Hh
Q psy16044        429 IN  430 (436)
Q Consensus       429 i~  430 (436)
                      |.
T Consensus       227 i~  228 (228)
T d1bioa_         227 LA  228 (228)
T ss_dssp             HC
T ss_pred             hC
Confidence            73

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.4e-23  Score=190.40  Aligned_cols=161  Identities=23%  Similarity=0.335  Sum_probs=108.5

Q ss_pred             CCCccccc---------ccccccceeecccccccCCCCeeeeccCCCCC----CCCCCCCeEEEEecCCCCCC-------
Q psy16044        271 AWPWQNLI---------TSFLSAALLKLSRPTSARDKGVRAVCLTDADK----RPVNPKQQCVATGWGRVKPK-------  330 (436)
Q Consensus       271 ~~p~~~~~---------~~~~diali~l~~~~~~~~~~v~picl~~~~~----~~~~~~~~~~~~Gwg~~~~~-------  330 (436)
                      .||.|+..         ...+|||||||++|+.++.. |+|||||....    ........+...+|+.....       
T Consensus        78 ~Hp~y~~~~~~~~~~~~~~~~DIALl~L~~~~~~s~~-v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (287)
T d1rrka1          78 FHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFV  156 (287)
T ss_dssp             ECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTT-BCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEE
T ss_pred             ecCCccccccccccCCCcccccEEEEecccCccccce-EEEEecCCccccccccccCCcceEeecCceeecCCCcccccc
Confidence            47777643         34589999999999999987 99999996532    11122222222333322111       


Q ss_pred             CCccccceEEEEEeeCccccc---ccc--C--------CCccCCCCceecccCCC--CCCCccCCCCceeeeEecCCcEE
Q psy16044        331 GDLVSKLRQIRVPLHNISVCR---DKY--G--------DSVELHGGHLCGGQLDG--FSGACIGDSGGPLQCSLKDGRWY  395 (436)
Q Consensus       331 ~~~~~~l~~~~~~~~~~~~C~---~~~--~--------~~~~~~~~~~C~~~~~~--~~~~c~gdsGgpl~~~~~~~~~~  395 (436)
                      ......++...+.+.+...|.   ...  .        ....++++||||+...+  ..++|.|||||||++.. +++|+
T Consensus       157 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~~-~~~~~  235 (287)
T d1rrka1         157 SEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFI  235 (287)
T ss_dssp             EESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEE-TTEEE
T ss_pred             ccCCceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCCCCCCCccCCeEEec-CCeEE
Confidence            112345677777777665542   111  0        01246789999976543  34689999999999985 78999


Q ss_pred             EEEEEEecCC--CC--------CCCCCeEEEeCcccHHHHHHHHhhhh
Q psy16044        396 LAGITSFGSG--CA--------KSGYPDVYTKLSFYLPWIRKQINIAV  433 (436)
Q Consensus       396 l~Gi~S~~~~--c~--------~~~~p~v~t~V~~~~~WI~~~i~~~~  433 (436)
                      |+||+|||..  |.        ....|.|||||+.|++||+++|+...
T Consensus       236 lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~~~~  283 (287)
T d1rrka1         236 QVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDED  283 (287)
T ss_dssp             EEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTTSS
T ss_pred             EEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhcCCC
Confidence            9999999753  32        23458899999999999999998654

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.6e-22  Score=174.50  Aligned_cols=142  Identities=27%  Similarity=0.560  Sum_probs=118.2

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.+......+|||||+|++|+.++.. ++|||||..+. .......+.+.||+....+...+..|+.+.+++.+ +.|
T Consensus        76 ~~~~~~~~~~~~diall~l~~~~~~~~~-~~pi~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-~~c  152 (218)
T d2z7fe1          76 FENGYDPVNLLNDIVILQLNGSATINAN-VQVAQLPAQGR-RLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLC  152 (218)
T ss_dssp             EESCCBTTTTBSCCEEEEESSCCCCSSS-CCCCCCCCTTC-CCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEEC-TTC
T ss_pred             eeeccccccccceEEEeeccccceeeee-eeeeeeccCcc-ccCCCcEEEEeccceeecccccccceeEEEecccc-ccc
Confidence            4788888889999999999999999998 99999998776 55678899999999887776667789999988886 345


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      +.          .+.|+.......+.|.||+||||+|+     |+|+||.||+. +|+....|.+||||++|++||+++|
T Consensus       153 ~~----------~~~~~~~~~~~~~~C~gdsG~Pl~~~-----~~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i  217 (218)
T d2z7fe1         153 RR----------SNVCTLVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII  217 (218)
T ss_dssp             CT----------TSEEEECTTSCCBCCTTCTTCEEEET-----TEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHH
T ss_pred             ce----------eeeeeeecCcccCccccccCCCEEEC-----CEEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHh
Confidence            43          34565554444578999999999984     37999999985 5777677999999999999999998


Q ss_pred             h
Q psy16044        430 N  430 (436)
Q Consensus       430 ~  430 (436)
                      +
T Consensus       218 ~  218 (218)
T d2z7fe1         218 Q  218 (218)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.5e-22  Score=174.05  Aligned_cols=142  Identities=31%  Similarity=0.559  Sum_probs=117.0

Q ss_pred             CCCcccccccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        271 AWPWQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       271 ~~p~~~~~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      .||.|...+..+|||||+|+.|+.++.. ++|||||..+. ....+..+.+.||+...........++...+.+.+...|
T Consensus        79 ~~~~~~~~~~~~diAll~L~~~~~~~~~-v~picl~~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~  156 (221)
T d1fuja_          79 FLNNYDAENKLNDILLIQLSSPANLSAS-VATVQLPQQDQ-PVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCR  156 (221)
T ss_dssp             EECCCBTTTTBCCCEEEEESSCCCCCSS-CCCCBCCCTTC-CCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEECTTCC
T ss_pred             EEeeecCCCCccEEEEEEccccccccce-EEEEEeccccc-ccCCCceEEEecccccccccccCccceeeeeeeeeeccc
Confidence            4788888889999999999999999988 99999998766 556788999999998877666677888888888765433


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCCCCCCCeEEEeCcccHHHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      ...          .+|. ......+.|.||+||||+++     ++|+||.||+. +|+..+.|.+||||++|++||+++|
T Consensus       157 ~~~----------~~~~-~~~~~~~~c~gd~G~pl~~~-----~~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~i  220 (221)
T d1fuja_         157 PHN----------ICTF-VPRRKAGICFGDSGGPLICD-----GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL  220 (221)
T ss_dssp             TTE----------EEEE-CSSSSCBCCTTCTTCEEEET-----TEEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHH
T ss_pred             ccc----------ceec-cccCCCceeCCccCCCEEEe-----CEEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHh
Confidence            221          2333 23445689999999999984     27999999985 6887788999999999999999998


Q ss_pred             h
Q psy16044        430 N  430 (436)
Q Consensus       430 ~  430 (436)
                      +
T Consensus       221 k  221 (221)
T d1fuja_         221 R  221 (221)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=99.86  E-value=1.4e-21  Score=174.48  Aligned_cols=154  Identities=30%  Similarity=0.562  Sum_probs=125.7

Q ss_pred             CCCcccc--cccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcc
Q psy16044        271 AWPWQNL--ITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  348 (436)
Q Consensus       271 ~~p~~~~--~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~  348 (436)
                      .||.++.  ....+|||||+|++++.++.. ++|+|++.... ....+..+.+.||+........+..++.+.+++++.+
T Consensus        79 ~h~~~~~~~~~~~~diall~l~~~~~~~~~-~~pi~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  156 (241)
T d1m9ua_          79 MHENYGAGTASYSNDIAILHLATSISLGGN-IQAAVLPANNN-NDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTA  156 (241)
T ss_dssp             ECTTTTCSSSTTTTCCEEEEESSCCCCCSS-CCCCCCCSCSS-CCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHH
T ss_pred             eeeeeccccccccccceeeeccceeeeeec-eeeeeeecccc-ccccceEEEEeecccccCCCCCCCcceEEEEEeechh
Confidence            3566655  456789999999999999998 99999997765 5678889999999988877677889999999999999


Q ss_pred             ccccccCCC--ccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC----CCCCCCCCeEEEeCcccH
Q psy16044        349 VCRDKYGDS--VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS----GCAKSGYPDVYTKLSFYL  422 (436)
Q Consensus       349 ~C~~~~~~~--~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~----~c~~~~~p~v~t~V~~~~  422 (436)
                      +|++.+...  .......+|........+.|.||+||||++.  +++++|+||+||..    .|+..+.|++||||++|+
T Consensus       157 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~--~~~~~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~  234 (241)
T d1m9ua_         157 QCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCP--DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYL  234 (241)
T ss_dssp             HHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEE--SSSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTH
T ss_pred             HhhhhhhcccccccccceeEeecccCCcCcccCCCCcceEEe--cCCEEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhH
Confidence            999876432  1234556666665556789999999999986  56789999999753    466667899999999999


Q ss_pred             HHHHHH
Q psy16044        423 PWIRKQ  428 (436)
Q Consensus       423 ~WI~~~  428 (436)
                      +||+++
T Consensus       235 ~WI~~n  240 (241)
T d1m9ua_         235 GWIGDN  240 (241)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999986

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.62  E-value=8.1e-16  Score=136.80  Aligned_cols=187  Identities=17%  Similarity=0.100  Sum_probs=106.3

Q ss_pred             CeEeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc--CC
Q psy16044         25 PRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE--EK  102 (436)
Q Consensus        25 ~~i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~--~~  102 (436)
                      .++..-......++||.+..+.....    ...|+|+||++++|||||||+.....   ....+.+..+.......  ..
T Consensus        28 ~~~~~v~~~~~~~~p~~~v~~i~~~g----~~~gTG~lI~~~~ILTa~Hvv~~~~~---~~~~~~~~~~~~~~~~~~~~~  100 (242)
T d1agja_          28 ELFSKVDEKDRQKYPYNTIGNVFVKG----QTSATGVLIGKNTVLTNRHIAKFANG---DPSKVSFRPSINTDDNGNTET  100 (242)
T ss_dssp             TTEEECCTTGGGSTTGGGEEEEEETT----TEEEEEEECSSSEEEECHHHHGGGTT---CGGGEEEEETCEECTTSCEEC
T ss_pred             HHhhhccccccccCCcccEEEEEeCC----CccEEEEEEeCCEEEEcccEeccCCC---ceEEEEEeecceecccceeee
Confidence            33444444556788888544332211    57899999999999999999965321   12223333332211111  01


Q ss_pred             ceEEEeeeEEEeCCCCCCCCCceeEEEeCCCCCC--CCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCcccccee
Q psy16044        103 SEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSA--RDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQ  180 (436)
Q Consensus       103 ~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~--~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~  180 (436)
                      ....+.+..+..+|.  ...+|||||+|+.+...  ....+.|+.|...  ..+..++.++++||.....    ...+..
T Consensus       101 ~~~~~~~~~~~~~~~--~~~~D~All~l~~~~~~~~~~~~~~~~~l~~s--~~~~~G~~v~~~GyP~~~~----~~~~~~  172 (242)
T d1agja_         101 PYGEYEVKEILQEPF--GAGVDLALIRLKPDQNGVSLGDKISPAKIGTS--NDLKDGDKLELIGYPFDHK----VNQMHR  172 (242)
T ss_dssp             TTCCEEEEEEESCTT--CTTSCCEEEEECCCTTSCCHHHHSCCCEECCS--TTCCTTCEEEEEECCTTTS----TTCCEE
T ss_pred             ccceEEEEEEeeecC--CCcCcEEEEEeccccccccccccCcceeeccc--ccccCCcEEEEEEcCCCCc----cceeEe
Confidence            112344555555443  23569999999866431  1234778888764  3356789999999964321    112222


Q ss_pred             eeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC
Q psy16044        181 IRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG  249 (436)
Q Consensus       181 ~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~  249 (436)
                      ....+....              ..+...     ..++.|+|||||+.  .+|  .|+||.+.+....+
T Consensus       173 ~~~~~~~~~--------------~~~~~~-----~~~~~G~SGgPl~~--~~g--~vVGI~~~~~~~~~  218 (242)
T d1agja_         173 SEIELTTLS--------------RGLRYY-----GFTVPGNSGSGIFN--SNG--ELVGIHSSKVSHLD  218 (242)
T ss_dssp             EEEEECCGG--------------GSEEEE-----CCCCGGGTTCEEEC--TTS--EEEEEEEEEEECSS
T ss_pred             ccccccccc--------------ccEEEe-----cccCCccCCCcEEC--CCC--eEEEEEeEeecCCC
Confidence            222211111              112211     46789999999983  233  59999999876443

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.60  E-value=2.3e-15  Score=131.46  Aligned_cols=174  Identities=15%  Similarity=0.132  Sum_probs=94.3

Q ss_pred             CCCCcceE--EEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEE
Q psy16044         35 RGAWPWQV--SLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERI  112 (436)
Q Consensus        35 ~~~~Pw~v--~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i  112 (436)
                      ..++||.+  .|.......   .++|+|+||++++|||||||+.+...   ....+.+............. ........
T Consensus        14 ~~~~p~~~v~~i~~~~~~~---~~~cTG~lI~~~~vLTAaHcv~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   86 (216)
T d2o8la1          14 TTNGHYAPVTYIQVEAPTG---TFIASGVVVGKDTLLTNKHVVDATHG---DPHALKAFPSAINQDNYPNG-GFTAEQIT   86 (216)
T ss_dssp             TTSGGGTTEEEEEEEETTE---EEEEEEEEEETTEEEECHHHHHTTTT---CGGGEEEEETCCBTTBCTTC-CEEEEEEE
T ss_pred             CCcCchheEEEEEEEcCCC---CEEEEEEEEeCCEEEEeeeeeccCCC---ceEEEEEEecccccceeeee-eEEeeeee
Confidence            45677754  444433221   57899999999999999999977432   22334444333322221111 11111111


Q ss_pred             EeCCCCCCCCCceeEEEeCCCCCCCCCc---eeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchh
Q psy16044        113 RVHEEFHNYHHDIALLKLSRPTSARDKG---VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS  189 (436)
Q Consensus       113 ~~hp~y~~~~~DiAll~L~~~~~~~~~~---v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~  189 (436)
                      ..     ...+|+|||+|+.+.. ....   ..+..+..  ......+....++||.......    ......-.+....
T Consensus        87 ~~-----~~~~D~all~l~~~~~-~~~~~~~~~~~~~~~--~~~~~~g~~~~~~g~~~~~~~~----~~~~~~~~~~~~~  154 (216)
T d2o8la1          87 KY-----SGEGDLAIVKFSPNEQ-NKHIGEVVKPATMSN--NAETQTNQNITVTGYPGDKPVA----TMWESKGKITYLK  154 (216)
T ss_dssp             EC-----SSSSCCEEEEECCCTT-SCCTTTSSCCCEECC--CTTCCTTCEEEEEECCTTSSTT----CEEEEEEEEEEEE
T ss_pred             cc-----ccCCceEEEEeccccc-ccccccceeeeeccc--cccccCCceeEEEEccCCCcee----eEEEEeeEEEEcc
Confidence            22     2357999999988765 2221   22222222  2233456778889987443221    1111111221111


Q ss_pred             hhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC
Q psy16044        190 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG  249 (436)
Q Consensus       190 ~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~  249 (436)
                                   ...+..     ..++|.|+|||||+.  .++  .++||.++|..++.
T Consensus       155 -------------~~~l~~-----~~~~~~G~SGgPv~~--~~g--~vVGI~s~g~~~~~  192 (216)
T d2o8la1         155 -------------GEAMQY-----DLSTTGGNSGSPVFN--EKN--EVIGIHWGGVPNEF  192 (216)
T ss_dssp             -------------TTEEEE-----SCCCCTTCTTCEEEC--TTS--CEEEEEEEEETTTE
T ss_pred             -------------CCeEEE-----ecCcCCCCCCCcEEC--CCC--EEEEEEeeecCCCC
Confidence                         122222     157899999999983  334  49999999976443

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5e-14  Score=126.01  Aligned_cols=100  Identities=29%  Similarity=0.458  Sum_probs=83.7

Q ss_pred             CCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEec---CCcEEEEEEEeEcCCCC
Q psy16044        172 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK---DGRWYLAGITSFGSGYC  248 (436)
Q Consensus       172 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~---~~~~~l~GI~S~g~~~C  248 (436)
                      +.....++...+++++.+.|+..+.......+.++|+....+..+.|.||+||||++...   .++|+|+||+|||.+||
T Consensus       141 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~  220 (255)
T d1z8ga1         141 GQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCA  220 (255)
T ss_dssp             SCBCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSS
T ss_pred             CcccceeEEEEEEEeCHHHhhhhhccCccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEECCCCC
Confidence            344567899999999999999877666666778898888777788999999999999863   46899999999999876


Q ss_pred             CC--CcccccccceecCCccccCCC
Q psy16044        249 GV--GIRYSHRQPRLINGKESIRGA  271 (436)
Q Consensus       249 ~~--~~~y~~v~~~~~~~~~~~~~~  271 (436)
                      ..  +.+|++|.+|..||++.+...
T Consensus       221 ~~~~p~vft~V~~y~~WI~~~i~~~  245 (255)
T d1z8ga1         221 LAQKPGVYTKVSDFREWIFQAIKTH  245 (255)
T ss_dssp             CTTCCEEEEEGGGGHHHHHHHHHHT
T ss_pred             CCCCCEEEEEHHHhHHHHHHHHHHc
Confidence            54  478999999999999887644

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.8e-14  Score=124.61  Aligned_cols=93  Identities=30%  Similarity=0.567  Sum_probs=78.4

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC--Cc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV--GI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~--~~  252 (436)
                      ...++...+.+++.++|+..+... ...+.++|++...+..+.|.||+||||++. .+++|+|+||+|||.+||..  +.
T Consensus       142 ~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~-~~~~~~l~Gi~s~g~~~~~~~~p~  219 (237)
T d1xx9a_         142 QNTLQKAKIPLVTNEECQKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPG  219 (237)
T ss_dssp             CSBCEEEECCEECHHHHHHHTTTS-CCCTTEEEECCTTCCCBCCTTCTTCEEEEE-ETTEEEEEEEEEEESSSSCTTCCE
T ss_pred             CCccEEEEEEEeCHHHHhhhhcCC-CCCCceEEEecCCCCcccccCCccceeEEe-cCCEEEEEEEEEeCCCCCCCCCCE
Confidence            456888899999999999887553 345799999887777899999999999997 47999999999999986644  46


Q ss_pred             ccccccceecCCccccC
Q psy16044        253 RYSHRQPRLINGKESIR  269 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~~  269 (436)
                      +|++|.++.+||.+.+.
T Consensus       220 vft~v~~~~~WI~~~~~  236 (237)
T d1xx9a_         220 VYTNVVEYVDWILEKTQ  236 (237)
T ss_dssp             EEECGGGGHHHHHHHHC
T ss_pred             EEEEhHHhHhHHHHHHC
Confidence            89999999999987653

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=99.47  E-value=5e-14  Score=124.50  Aligned_cols=90  Identities=36%  Similarity=0.576  Sum_probs=76.6

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC--Cc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV--GI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~--~~  252 (436)
                      +..|++..+.+++.+.|...+... ...+.++|........+.|.|||||||++. .+++|+|+||+|||.+||..  +.
T Consensus       143 ~~~l~~~~~~~~~~~~C~~~~~~~-~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~-~~~~~~L~Gi~S~g~~c~~~~~p~  220 (237)
T d2f91a1         143 PDVLQKVTVPLVSDEDCRADYGAD-EILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPG  220 (237)
T ss_dssp             CSBCEEEEEEEECHHHHHHHHCTT-TSCTTEEEECCTTCCCBCCTTCTTCEEEEC-TTSSCEEEEEEEEESSSSCTTCCE
T ss_pred             CchheEEEEEEeCHHHHhhhccCC-cccCceeEeecCCCccccccCCCCCeEEEe-cCCeEEEEEEEEeCCCCCCCCCCE
Confidence            456889999999999999887643 345688999888888899999999999997 57899999999999886543  46


Q ss_pred             ccccccceecCCcc
Q psy16044        253 RYSHRQPRLINGKE  266 (436)
Q Consensus       253 ~y~~v~~~~~~~~~  266 (436)
                      +|++|.+|..||++
T Consensus       221 v~t~v~~y~~WI~~  234 (237)
T d2f91a1         221 VYTEVSYHVDWIKA  234 (237)
T ss_dssp             EEEEGGGSHHHHHH
T ss_pred             EEEEHHHHHHHHHH
Confidence            89999999999974

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.46  E-value=5e-14  Score=124.63  Aligned_cols=94  Identities=26%  Similarity=0.437  Sum_probs=76.7

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCC-CCC---
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CGV---  250 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~-C~~---  250 (436)
                      +..++...+.+++...|++...........++|+..... .+.|.||+||||++...+++|+|+||+|||..+ |+.   
T Consensus       142 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~C~gdsGgPl~~~~~~~~~~L~Gi~S~g~~~~c~~~~~  220 (241)
T d1brup_         142 PDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGI-ISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHK  220 (241)
T ss_dssp             CSBCEEEEEEEECHHHHTSTTTTGGGCCTTEEEECCSSS-SBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTC
T ss_pred             CCcceEEEEEEeCHHHhCccccccccccccceeecCCCC-ccccCCCcccceEEEcCCCCEEEEEEEEECCCCCCCCCCC
Confidence            356888999999999998876554455567777766444 789999999999998888999999999999874 543   


Q ss_pred             CcccccccceecCCccccC
Q psy16044        251 GIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       251 ~~~y~~v~~~~~~~~~~~~  269 (436)
                      +.+|++|.+|..||++++.
T Consensus       221 p~vyt~v~~~~~WI~~~i~  239 (241)
T d1brup_         221 PSVFTRVSNYIDWINSVIA  239 (241)
T ss_dssp             CEEEEEGGGSHHHHHHHHH
T ss_pred             CEEEEEHHHHHHHHHHHHh
Confidence            4689999999999987653

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.46  E-value=3.6e-14  Score=120.55  Aligned_cols=161  Identities=16%  Similarity=0.125  Sum_probs=85.3

Q ss_pred             CeeeE-EEEe---cCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEe
Q psy16044         55 PHWCG-AVLI---HPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKL  130 (436)
Q Consensus        55 ~~~C~-GtLI---s~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L  130 (436)
                      .+.|+ |.++   +.+||||||||+...       .  .+...        ...+.+.+.....+|.     +|+|++++
T Consensus        11 ~~~Ct~Gf~v~~~g~~~ilTAaHCv~~~-------~--~~~~~--------~~~~~~~~~~~~~~~~-----~D~a~~~~   68 (187)
T d1hpga_          11 GSRCSAAFNVTKGGARYFVTAGHCTNIS-------A--NWSAS--------SGGSVVGVREGTSFPT-----NDYGIVRY   68 (187)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTC-------S--EEESS--------TTCCEEEEEEEEECSB-----SCEEEEEE
T ss_pred             CCeEeeeEEEEcCCCcEEEEchhcCCCC-------C--eeEEC--------CCCEEEEEEEeecccC-----Cchhheec
Confidence            56798 7887   557999999998652       1  12221        1224556677777776     69999999


Q ss_pred             CCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEecc
Q psy16044        131 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ  210 (436)
Q Consensus       131 ~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~  210 (436)
                      +.+.. ....+   .+..        .......||.........................+..    .. ......|...
T Consensus        69 ~~~~~-~~~~~---~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~  131 (187)
T d1hpga_          69 TDGSS-PAGTV---DLYN--------GSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNV----TV-NYGDGPVYNM  131 (187)
T ss_dssp             CSSCC-CCSEE---ECSS--------SCEEECCEECCCCTTCEEEEEETTTEEEEEEEEEEEE----EE-EETTEEEEEE
T ss_pred             ccCcc-cceeE---ecCC--------Ccccccccceeeeccccccccccceeeeeeeeeeccc----cE-EcCCccEecc
Confidence            98765 22222   2211        1222333443222111110000000000000000000    00 0113344333


Q ss_pred             CCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCC--cccccccc
Q psy16044        211 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG--IRYSHRQP  259 (436)
Q Consensus       211 ~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~--~~y~~v~~  259 (436)
                      .......|.|||||||++.+     .++||+|+|.++|+..  ..|++|..
T Consensus       132 ~~~~~~~~~GDSGgPl~~~~-----~~vGi~s~g~~~~~~~~~~~~~pv~~  177 (187)
T d1hpga_         132 VRTTACSAGGDSGGAHFAGS-----VALGIHSGSSGCSGTAGSAIHQPVTE  177 (187)
T ss_dssp             EEECCCCCTTCTTCEEEETT-----EEEEEEEEESCCBTTBCCCEEEEHHH
T ss_pred             EEcCcccccCCCCCeEEECC-----EEEEEEEEEecCCCCCCCEEEEEHHH
Confidence            33347799999999999742     4999999999987664  45666643

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=99.41  E-value=1.2e-13  Score=120.63  Aligned_cols=88  Identities=27%  Similarity=0.483  Sum_probs=74.4

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~  252 (436)
                      ...|+...+.+++.++|+..+...  ..+.+||++...+..+.|.||+||||+++     ++|+||+|||.+||.  .+.
T Consensus       131 ~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPl~~~-----~~l~Gi~S~g~~~~~~~~p~  203 (222)
T d1hj8a_         131 SNKLQCLNIPILSYSDCNNSYPGM--ITNAMFCAGYLEGGKDSCQGDSGGPVVCN-----GELQGVVSWGYGCAEPGNPG  203 (222)
T ss_dssp             TTBCEEEEEEBCCHHHHHHHSTTC--CCTTEEEESCTTSSCBCCTTCTTCEEEET-----TEEEEEEEECSSSSCTTCCE
T ss_pred             ccccEEEEEEEeCHHHHhhhcccc--cccceEEEccCCCCcccccCCcccEEEEC-----CEEEEEEEEecCCCCCCCCE
Confidence            346889999999999999988654  45689999888877889999999999984     369999999998654  446


Q ss_pred             ccccccceecCCccccC
Q psy16044        253 RYSHRQPRLINGKESIR  269 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~~  269 (436)
                      +|++|.+|..||++++.
T Consensus       204 v~t~v~~y~~WI~~~i~  220 (222)
T d1hj8a_         204 VYAKVCIFNDWLTSTMA  220 (222)
T ss_dssp             EEEEGGGGHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHH
Confidence            89999999999988754

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.39  E-value=1.4e-13  Score=120.36  Aligned_cols=94  Identities=24%  Similarity=0.362  Sum_probs=76.2

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~  252 (436)
                      ...++...+.+++.++|+..+.......+..+|+....+..+.|.+|+|+||++....++|+|+||+|||..||.  .+.
T Consensus       125 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~G~pl~~~~~~~~~~L~Gi~s~~~~c~~~~~p~  204 (223)
T d1os8a_         125 QRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPG  204 (223)
T ss_dssp             CSBCEEEEEEEECHHHHHHHHGGGSCTTTEEEESCTTTCCCBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCE
T ss_pred             ccccccceeeEeCHHHhhhhhcCCCccCcceeeeccccCCcCccccccccceEEecCCCeEEEEEEEEeCCCCCCCCCCE
Confidence            456888999999999999888665544444455555555678999999999999877889999999999998663  346


Q ss_pred             ccccccceecCCcccc
Q psy16044        253 RYSHRQPRLINGKESI  268 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~  268 (436)
                      +|++|..|..||.+++
T Consensus       205 vft~V~~y~~WI~~~~  220 (223)
T d1os8a_         205 VYTEVSTFASAIASAA  220 (223)
T ss_dssp             EEEEHHHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHH
Confidence            8999999999998765

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.8e-13  Score=117.17  Aligned_cols=109  Identities=29%  Similarity=0.451  Sum_probs=90.8

Q ss_pred             CcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEE
Q psy16044        158 QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL  237 (436)
Q Consensus       158 ~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l  237 (436)
                      ..+.+.||+...........|+++.+.+.+...|...+...  ..+..+|+....+..+.|.||+||||++. .+++|+|
T Consensus       123 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~~~~~--~~~~~~~~~~~~~~~~~~~gdsGgpl~~~-~~~~~~l  199 (235)
T d1rfna_         123 GSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT--IYNNMFCAGFHEGGRDSCQGDSGGPHVTE-VEGTSFL  199 (235)
T ss_dssp             SEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHHHCSSC--CCTTEEEESCSSCSCBCCTTCTTCEEEEE-SSSCEEE
T ss_pred             ceEEEeccccccccccccCcceEEEEecccccccccccCce--ecCCeeEeecCCCCccccCCCCCceeEEe-cCCeEEE
Confidence            34688899988877777778999999999999998887643  23467777777777899999999999997 5789999


Q ss_pred             EEEEeEcCCCCCC--CcccccccceecCCccccC
Q psy16044        238 AGITSFGSGYCGV--GIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       238 ~GI~S~g~~~C~~--~~~y~~v~~~~~~~~~~~~  269 (436)
                      +||+|||..||..  +.+|++|.++..||.+++.
T Consensus       200 ~Gi~s~g~~~~~~~~p~vyt~v~~~~~WI~~~~~  233 (235)
T d1rfna_         200 TGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK  233 (235)
T ss_dssp             EEEEEEESSSSCTTCCEEEEEGGGTHHHHHHHHC
T ss_pred             EEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhc
Confidence            9999999986653  3589999999999988754

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=99.37  E-value=4.6e-13  Score=117.44  Aligned_cols=87  Identities=28%  Similarity=0.515  Sum_probs=73.8

Q ss_pred             ccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcc
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIR  253 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~  253 (436)
                      ..|+...+.+++.+.|+..+...  ..+.++|+.........|.||+||||+++     |+|+||+|||..+|.  .+.+
T Consensus       137 ~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~-----~~l~Gi~s~g~~~~~~~~p~v  209 (228)
T d1fxya_         137 DELQCLDAPVLSQAKCEASYPGK--ITSNMFCVGFLEGGKDSCQGDSGGPVVCN-----GQLQGVVSWGDGCAQKNKPGV  209 (228)
T ss_dssp             SSCEEEEEEBCCHHHHHHHSTTT--CCTTEEEESCTTCSCBCCTTCTTCEEEET-----TEEEEEEEECSSSSBTTBCEE
T ss_pred             chhEEEEEEEeCHHHHhhhcCCc--ccceeeEeecCCCCcccccCccCccEEEe-----CEEEEEEEECCCCCCCCCCEE
Confidence            56899999999999999988653  34688998877777899999999999984     379999999998764  4568


Q ss_pred             cccccceecCCccccC
Q psy16044        254 YSHRQPRLINGKESIR  269 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~  269 (436)
                      |++|.++..||++++.
T Consensus       210 ft~v~~~~~WI~~~i~  225 (228)
T d1fxya_         210 YTKVYNYVKWIKNTIA  225 (228)
T ss_dssp             EEEGGGGHHHHHHHHH
T ss_pred             EEEHHHHHHHHHHHHH
Confidence            9999999999987753

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=115.19  Aligned_cols=109  Identities=25%  Similarity=0.453  Sum_probs=91.5

Q ss_pred             CCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEE
Q psy16044        157 KQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY  236 (436)
Q Consensus       157 ~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~  236 (436)
                      ...+.+.||+.....+.....++...+.+++.+.|...+....  ...++|+.........|.||+||||++.. +++|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~~~~gdsGgpl~~~~-~~~~~  198 (233)
T d2p3ub1         122 QKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFII--TQNMFCAGYDTKQEDACQGDSGGPHVTRF-KDTYF  198 (233)
T ss_dssp             SSEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHHHCSSCC--CTTEEEESCSSSSCBCCTTTTTCEEEEEE-TTEEE
T ss_pred             cceEEEecCCccccCCCccccccccccccccchhhhcccCceE--eecceeeecccccCCCcCCCcccccEEec-CCeEE
Confidence            3566888999888777777788999999999999999886543  35788888777778999999999999985 78999


Q ss_pred             EEEEEeEcCCCCCC--CcccccccceecCCcccc
Q psy16044        237 LAGITSFGSGYCGV--GIRYSHRQPRLINGKESI  268 (436)
Q Consensus       237 l~GI~S~g~~~C~~--~~~y~~v~~~~~~~~~~~  268 (436)
                      |+||+|||..||..  +.+|++|.+|..||++++
T Consensus       199 L~Gv~s~g~~c~~~~~p~vyt~v~~y~~WI~~~i  232 (233)
T d2p3ub1         199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM  232 (233)
T ss_dssp             EEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHT
T ss_pred             EEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence            99999999986544  458999999999998765

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.4e-12  Score=113.87  Aligned_cols=86  Identities=29%  Similarity=0.419  Sum_probs=72.5

Q ss_pred             ccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcc
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIR  253 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~  253 (436)
                      ..|+...+.+++.+.|+..+..  ...++++|+....+..+.|.||+||||+++     |+|+||+|||..||.  .+.+
T Consensus       133 ~~l~~~~~~~~~~~~C~~~~~~--~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~-----~~L~Gi~s~~~~~~~~~~p~v  205 (223)
T d1j16a_         133 DLLQCLDAPLLPQADCEASSSF--IITDNMVCVGFLEGGKDACQGDSGGPVVCN-----GELQGIVSWGYGCALPDNPGV  205 (223)
T ss_dssp             SBCEEEEEEEECHHHHHSSSSC--CCCTTEEEESCTTCSCBCCTTCTTCEEEET-----TEEEEEEEECSSSSCTTCCEE
T ss_pred             ceeeEEEEEEEEhhHhhccccc--eeCCCceEEecCCCCCcccCCccCCcEEEe-----eEEEEEEEEccCCCCCCCCEE
Confidence            3578889999999999987653  345689999888887899999999999984     379999999998764  4578


Q ss_pred             cccccceecCCcccc
Q psy16044        254 YSHRQPRLINGKESI  268 (436)
Q Consensus       254 y~~v~~~~~~~~~~~  268 (436)
                      |++|..+..||++.+
T Consensus       206 ft~v~~~~~WI~~~i  220 (223)
T d1j16a_         206 YTKVCNYVDWIQDTI  220 (223)
T ss_dssp             EEEGGGGHHHHHHHH
T ss_pred             EEEhHHhHHHHHHHH
Confidence            999999999998765

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.26  E-value=4.6e-12  Score=110.36  Aligned_cols=87  Identities=31%  Similarity=0.532  Sum_probs=73.7

Q ss_pred             ccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcc
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIR  253 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~  253 (436)
                      ..|+...+++++.++|+..+...  ..+.++|+....+..+.|.||+||||+++     |+|+||+|||.+||.  .+.+
T Consensus       133 ~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~c~~~~~~~~~~~~gd~g~pl~~~-----~~L~Gi~S~g~~c~~~~~p~v  205 (223)
T d1hj9a_         133 DVLKCLKAPILSDSSCKSAYPGQ--ITSNMFCAYGLEGKGDSCQGDSGGPVVCS-----GKLQGIVSWGSGCQAKNKPGV  205 (223)
T ss_dssp             SSCEEEEEECCCHHHHHHHSTTT--CCTTEEECCCCCCCCCCCTTCTTCEEEET-----TEEEEEEEECSCCCCCCCCCE
T ss_pred             ccceEEEEeecCHHHHHHHhCCc--ccccceEEeecCCCcccccCCCCceeEEe-----CEEEEEEEEcCCCCCCCCCEE
Confidence            56889999999999999988654  34588998887777899999999999985     379999999998664  4578


Q ss_pred             cccccceecCCccccC
Q psy16044        254 YSHRQPRLINGKESIR  269 (436)
Q Consensus       254 y~~v~~~~~~~~~~~~  269 (436)
                      |++|.++..||.+++.
T Consensus       206 yt~v~~~~~WI~~~i~  221 (223)
T d1hj9a_         206 YTKVCNYVSWIKQTIA  221 (223)
T ss_dssp             EEEGGGGHHHHHHHHT
T ss_pred             EEEHHHHHHHHHHHHh
Confidence            9999999999987764

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.26  E-value=2.2e-11  Score=107.71  Aligned_cols=176  Identities=18%  Similarity=0.141  Sum_probs=97.1

Q ss_pred             ccCCCCCcc--eEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCcc---CCceEE
Q psy16044         32 ESIRGAWPW--QVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEE---EKSEVR  106 (436)
Q Consensus        32 ~a~~~~~Pw--~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~---~~~~~~  106 (436)
                      .....++||  ++.|....      ..+|+|+||++++||||+||+.+..   .....+.+..+.......   ......
T Consensus        28 v~d~~~~p~~~v~~i~~~g------~~~GTGflI~~~~ILTa~HVv~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~   98 (246)
T d1qtfa_          28 ITDNARSPYNSVGTVFVKG------STLATGVLIGKNTIVTNYHVAREAA---KNPSNIIFTPAQNRDAEKNEFPTPYGK   98 (246)
T ss_dssp             CSCCSSTTGGGEEEEEETT------TEEEEEEEEETTEEEECHHHHGGGT---TCGGGEEEEETCCCCTTTTCCCCTTCC
T ss_pred             ecccccCccccEEEEEeCC------CceEEEEEEeCCeEEEchhecccCC---cceEEEEEecCCcceeeeeeecCCCce
Confidence            444567777  55665433      6789999999999999999996531   122334455554322111   111233


Q ss_pred             EeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCC-CCCCCCCCCcEEEEecCccCCCCCccccceeeeeec
Q psy16044        107 IPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDA-DKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL  185 (436)
Q Consensus       107 ~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~-~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~  185 (436)
                      +.+..+..++.  ....|+|||+|+.+.. ......++..... .......+...+++||.......    .........
T Consensus        99 ~~~~~~~~~~~--~~~~DiAll~l~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~P~~~~~~----~~~~~~~~~  171 (246)
T d1qtfa_          99 FEAEEIKESPY--GQGLDLAIIKLKPNEK-GESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAY----SLYQSQIEM  171 (246)
T ss_dssp             EEEEEEESCTT--CTTSCCEEEEECCCTT-SCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTSTT----CCEEEEEEE
T ss_pred             EEEEEEEecCC--cccCceEEEEeccccc-cccccccCceeeccccccccCCCEEEEEeCCCCCCcc----eeeccceEe
Confidence            44555554443  2346999999987654 2222222221111 12334567889999996433111    111111111


Q ss_pred             cchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC
Q psy16044        186 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG  249 (436)
Q Consensus       186 ~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~  249 (436)
                      .+.          .    .+        ...+..|+|||||+-  .+|  .|+||.+.|.+...
T Consensus       172 ~~~----------~----~~--------~~~~~~G~SGgPv~n--~~G--~vVGI~~~g~~~~~  209 (246)
T d1qtfa_         172 FND----------S----QY--------FGYTEVGNSGSGIFN--LKG--ELIGIHSGKGGQHN  209 (246)
T ss_dssp             SSS----------S----BE--------ESCCCGGGTTCEEEC--TTC--CEEEEEEEEETTTT
T ss_pred             CCC----------c----eE--------EeeccCCCCCCcEEC--CCC--eEEEEEecccCCCC
Confidence            110          0    01        134678999999993  344  49999998776443

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.4e-12  Score=113.32  Aligned_cols=96  Identities=22%  Similarity=0.274  Sum_probs=77.4

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC--CCCc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC--GVGI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C--~~~~  252 (436)
                      ...|+...+.+++.+.|...+.......+.++|+....+..+.|.||+||||+++ .+++|+|+||+|+|..|+  ..+.
T Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~-~~~~~~l~Gi~s~g~~c~~~~~p~  210 (234)
T d1si5h_         132 DGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCE-QHKMRMVLGVIVPGRGCAIPNRPG  210 (234)
T ss_dssp             CCBCEEEEEEEECGGGTCC-------CCTTEEEEECSSSCCBCCTTCTTCEEEEE-CSSSEEEEEEECSCSCSSCTTCCE
T ss_pred             cceeEEEEeeccchhHhhhhhccccccCCccEEEccCCcCCCCCcCccccceEEe-cCCeEEEEEEEEeCCCCCCCCCCE
Confidence            4568899999999999998887666677899999888777899999999999997 478999999999998743  3457


Q ss_pred             ccccccceecCCccccCCC
Q psy16044        253 RYSHRQPRLINGKESIRGA  271 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~~~~  271 (436)
                      +|++|.++..||++++...
T Consensus       211 vyt~i~~~~~WI~~~i~~~  229 (234)
T d1si5h_         211 IFVRVAYYAKWIHKIILTY  229 (234)
T ss_dssp             EEEEGGGGHHHHHHHHSSC
T ss_pred             EEEEHHHHHHHHHHHhhcC
Confidence            9999999999999887654

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.3e-11  Score=108.63  Aligned_cols=104  Identities=31%  Similarity=0.566  Sum_probs=84.7

Q ss_pred             CcEEEEecCccCCCC-CccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEE
Q psy16044        158 QQCVATGWGRVKPKG-DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY  236 (436)
Q Consensus       158 ~~~~~~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~  236 (436)
                      ..++++|||...... .....+....+..++...|...+....  .+.++|+.......+.|.||+||||+++     |+
T Consensus       126 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--~~~~~~~~~~~~~~~~c~gdsG~pl~~~-----~~  198 (237)
T d1ao5a_         126 SKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKV--TDVMLCAGEMGGGKDTCRDDSGGPLICD-----GI  198 (237)
T ss_dssp             CEEEEEESCCSSCC-CCCCSBCEEEEEEEECHHHHHHHCSSCC--CTTEEEEECTTCSCBCCTTCTTCEEEET-----TE
T ss_pred             ceEEEeeeeeeccccccCCccceeeEEEEEehHHhhhhhcCCC--CCCeEEEccCCCCCcccCCCCCCeeEEc-----cE
Confidence            467899999766443 345568889999999999999886543  4588998877777899999999999974     48


Q ss_pred             EEEEEeEcCCCCCC---CcccccccceecCCcccc
Q psy16044        237 LAGITSFGSGYCGV---GIRYSHRQPRLINGKESI  268 (436)
Q Consensus       237 l~GI~S~g~~~C~~---~~~y~~v~~~~~~~~~~~  268 (436)
                      |+||+|||...|+.   +.+|++|.+|..||++.+
T Consensus       199 l~Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i  233 (237)
T d1ao5a_         199 LQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM  233 (237)
T ss_dssp             EEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHH
T ss_pred             EEEEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            99999999876743   579999999999998765

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.19  E-value=1.7e-12  Score=116.45  Aligned_cols=67  Identities=18%  Similarity=0.133  Sum_probs=51.5

Q ss_pred             cCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecC-CCC--CCCCCeEEEeCcccHHHHHHHH
Q psy16044        359 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS-GCA--KSGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       359 ~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~-~c~--~~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      .+...++|+....+....|.|||||||++.  +++  |+||+||+. .|.  ..+.|++|+||+.|.+||...+
T Consensus       172 ~~~~~~~c~~~~~~~~~~c~GDSGGPL~~~--~g~--~vGvvsgg~s~c~~c~~~~p~vYtrV~~~~~~~~~~~  241 (263)
T d1arba_         172 GAGTTHLNVQWQPSGGVTEPGSSGSPIYSP--EKR--VLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGGAAA  241 (263)
T ss_dssp             SSCSSEEEEECCTTSCCCCTTCTTCEEECT--TSC--EEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTTSSGG
T ss_pred             CCCccEEEEEecCCCccccCCCCcceEEec--CCC--EEEEEEEEEeCCcCCCCCCCceEEEEEEeeccCCcch
Confidence            467789999877776789999999999974  333  899999884 332  2357999999998877775544

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.2e-12  Score=110.20  Aligned_cols=94  Identities=28%  Similarity=0.461  Sum_probs=79.4

Q ss_pred             cccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC--Cc
Q psy16044        175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV--GI  252 (436)
Q Consensus       175 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~--~~  252 (436)
                      ...++...+.+++.+.|...........+.++|+....+..+.|.||+||||++. .+++|+|+||+|||..||..  +.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~-~~~~~~l~Gi~S~~~~c~~~~~p~  228 (247)
T d1rjxb_         150 AGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWGLGCARPNKPG  228 (247)
T ss_dssp             CSBCEEEEEEEECHHHHTSTTTTTTCSCTTEEEESCSSSCCCBCCSCTTCEEEEE-CSSSEEEEEEECTTSCCBBTTBCE
T ss_pred             CCcceEEEEEEEchHHhhhhhccCcccccceeEEeccCCCcccccCCccceEEEe-eCCEEEEEEEEEeCCCCCCCCCCE
Confidence            3567788899999999988776666667799999888877899999999999998 47899999999999886533  46


Q ss_pred             ccccccceecCCccccC
Q psy16044        253 RYSHRQPRLINGKESIR  269 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~~  269 (436)
                      +|++|.++..||++++.
T Consensus       229 v~t~v~~~~~WI~~~i~  245 (247)
T d1rjxb_         229 VYVRVSRFVTWIEGVMR  245 (247)
T ss_dssp             EEEEGGGGHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHh
Confidence            89999999999987754

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=7.4e-12  Score=109.46  Aligned_cols=208  Identities=30%  Similarity=0.550  Sum_probs=147.0

Q ss_pred             CCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeE----
Q psy16044         36 GAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVER----  111 (436)
Q Consensus        36 ~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~----  111 (436)
                      +++||+|+|+..+      +++|+||||+++||||||||+.+.         ..+++|...........+...+..    
T Consensus         1 ~~~Pw~v~i~~~~------~~~C~GtLIs~~~VLTaAhCv~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (228)
T d1sgfa_           1 NSQPWHVAVYRFN------KYQCGGVLLDRNWVLTAAHCYNDK---------YQVWLGKNNFLEDEPSDQHRLVSKAIPH   65 (228)
T ss_dssp             CCCTTEEEEECTT------SCCEEEEECSSSEEEECGGGCCSC---------CEEEECC----C-CTTCEEEEEEEEEEC
T ss_pred             CCCCcEEEEEECC------cEEEEEEEEcCCEEEeCHHHccCC---------ceEEEeeeeeccccccceeeeeeeeccc
Confidence            3689999998643      688999999999999999998653         356777665544433333333333    


Q ss_pred             -------EEeCCCCC--CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCC-CCccccceee
Q psy16044        112 -------IRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPK-GDLVSKLRQI  181 (436)
Q Consensus       112 -------i~~hp~y~--~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~-~~~~~~l~~~  181 (436)
                             +..|+.|+  ...+|||||+|++|+. ++.+++|||||...   ......+++.||+.+... ...+..|+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~Diall~L~~~v~-~~~~v~pi~l~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~l~~~  141 (228)
T d1sgfa_          66 PDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPAD-ITDVVKPITLPTEE---PKLGSTCLASGWGSTTPIKFKYPDDLQCV  141 (228)
T ss_dssp             TTSCGGGC----CCTTCBCTTCCEEEEESSCCC-CCSSCCCCCCCCSC---CCTTCEEEEC-------C---------CE
T ss_pred             cceeeeeecccCCCCccccccceeEEeeccccc-cCCceeeEecCccc---cccCcceEEEeeeeccCCccCCCCccEEE
Confidence                   34677776  4679999999999999 78899999999853   234678899999887644 3456779999


Q ss_pred             eeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---CCccccccc
Q psy16044        182 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---VGIRYSHRQ  258 (436)
Q Consensus       182 ~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---~~~~y~~v~  258 (436)
                      .+.+++.+.|+..+...  ..+.++|+....+....|.+|+||||+++     ++|+||+|||...|+   .+.+|++|.
T Consensus       142 ~~~~~~~~~C~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~G~pl~~~-----~~l~Gv~S~g~~~c~~~~~p~vyt~V~  214 (228)
T d1sgfa_         142 NLKLLPNEDCDKAHEMK--VTDAMLCAGEMDGGSYTCEHDSGGPLICD-----GILQGITSWGPEPCGEPTEPSVYTKLI  214 (228)
T ss_dssp             EEEEECTHHHHTTCSSB--CCTTEEEEEECSSSEEECCCCTTCEEEET-----TEEEEEECCCCSSCCCSSCCEEEEESG
T ss_pred             EEEEeCHHHhhhhccCC--cccceEEeccCCCCccccCCCcCCcEEEe-----CEEEEEEEECCCCCCCCCCCeEEEEHH
Confidence            99999999998876543  34578888887777889999999999984     389999999986564   356899999


Q ss_pred             ceecCCccccC
Q psy16044        259 PRLINGKESIR  269 (436)
Q Consensus       259 ~~~~~~~~~~~  269 (436)
                      ++..||.+.+.
T Consensus       215 ~~~~WI~~~i~  225 (228)
T d1sgfa_         215 KFSSWIRETMA  225 (228)
T ss_dssp             GGHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987764

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.14  E-value=9.6e-13  Score=114.16  Aligned_cols=128  Identities=11%  Similarity=0.044  Sum_probs=79.4

Q ss_pred             CCcccc-cccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCcccc
Q psy16044        272 WPWQNL-ITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVC  350 (436)
Q Consensus       272 ~p~~~~-~~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C  350 (436)
                      ||.+.. ....+|+|||+|+.++...   ..+++++...   ...++.+.+.||+...........+............ 
T Consensus        85 ~~~~~~~~~~~~DiAll~l~~~~~~~---~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (215)
T d1p3ca_          85 PSGYINTGASQYDFAVIKTDTNIGNT---VGYRSIRQVT---NLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDT-  157 (215)
T ss_dssp             CHHHHHHCCGGGCCEEEEESSCHHHH---HCCCCBCCCS---CCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEECS-
T ss_pred             ecccccCCCccceEEEEEeccCCCcc---cccccccccc---ccCCceeEEEcCCCCcCCCcccceeeEeeeccccccc-
Confidence            444433 3567899999999987643   3455665443   3578999999998643211111111111111111111 


Q ss_pred             ccccCCCccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCC-CCCCeEEEeCcccHHHHHH
Q psy16044        351 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAK-SGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~-~~~p~v~t~V~~~~~WI~~  427 (436)
                                   ..+.    .....|.|||||||+.    ..+.|+||.|+|..|+. ...|.+|++|..|++||++
T Consensus       158 -------------~~~~----~~~~~~~G~SGgPl~~----~~~~lvGi~s~g~~~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         158 -------------NLAY----YTIDTFSGNSGSAMLD----QNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             -------------SEEE----ECCCCCTTCTTCEEEC----TTSCEEEECCEEEGGGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             -------------ccce----eecccCCCCccCeEEC----CCCEEEEEEEeccCCCCCCCCeEEEeEHHHHHHHHHc
Confidence                         1111    1126799999999984    23469999999987654 2347889999999999986

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.5e-11  Score=106.07  Aligned_cols=106  Identities=29%  Similarity=0.541  Sum_probs=84.7

Q ss_pred             EecCccCCCCCccccceeeeeeccchhhhhhhcCCC----cCCcCCeEEeccCCCCCCCccCCCCCeeeeEec-CCcEEE
Q psy16044        163 TGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDS----VELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYL  237 (436)
Q Consensus       163 ~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~-~~~~~l  237 (436)
                      .||+... .+..+..|+...+.+++.+.|...+...    ....+.++|++...+..+.|.||+||||++... +++|+|
T Consensus       127 ~g~~~~~-~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~~~l  205 (242)
T d1q3xa1         127 SGWGLTQ-RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFV  205 (242)
T ss_dssp             EESSCCT-TSSCCSBCEEEEEEEECHHHHHHHTSSTTSCTTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEETTTTEEEE
T ss_pred             eeccccc-cCccccceeeeeccccCHHHHHhhhhcccccCceeccceeeeeccCCCccccccccccceEEeeCCCCeEEE
Confidence            4666554 3344677999999999999999887542    234567889888888789999999999998754 578999


Q ss_pred             EEEEeEcCCCCCC---CcccccccceecCCccccC
Q psy16044        238 AGITSFGSGYCGV---GIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       238 ~GI~S~g~~~C~~---~~~y~~v~~~~~~~~~~~~  269 (436)
                      +||+|||...|+.   +.+|++|.+|..||.+++.
T Consensus       206 ~Gi~S~g~~~c~~~~~p~vft~v~~~~~WI~~~v~  240 (242)
T d1q3xa1         206 GGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS  240 (242)
T ss_dssp             EEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCCCCCEEEEEHHHhHHHHHHHHH
Confidence            9999999877754   3589999999999988754

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.10  E-value=2.2e-11  Score=106.92  Aligned_cols=87  Identities=32%  Similarity=0.530  Sum_probs=73.6

Q ss_pred             ccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Cc
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GI  252 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~  252 (436)
                      ..|+...+++++.++|+..+....  .+.++|+....+..+.|.||+||||+++     |+|+||+|||...|+.   +.
T Consensus       143 ~~l~~~~~~~~~~~~C~~~~~~~~--~~~~~c~~~~~~~~~~c~gdsG~Pl~~~-----~~l~Gi~S~g~~~c~~~~~p~  215 (235)
T d1tona_         143 HDLQCVNIHLLSNEKCIETYKDNV--TDVMLCAGEMEGGKDTCAGDSGGPLICD-----GVLQGITSGGATPCAKPKTPA  215 (235)
T ss_dssp             SBCEEEEEEEECGGGCGGGGSTTG--GGGEEEEECTTCSCBCCTTCTTCEEEET-----TEEEEEECCCCSSCSCTTCCE
T ss_pred             ccceeeeeeeeCHHHHHHHhCCCC--CCCceEeCcCCCCccccCCCcCCeEEEc-----CEEEEEEEeCCCCCCCCCCCe
Confidence            358889999999999999887543  4589999887877899999999999984     4899999999876643   46


Q ss_pred             ccccccceecCCccccC
Q psy16044        253 RYSHRQPRLINGKESIR  269 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~~  269 (436)
                      +|++|.+|..||++++.
T Consensus       216 vyt~v~~y~~WI~~~i~  232 (235)
T d1tona_         216 IYAKLIKFTSWIKKVMK  232 (235)
T ss_dssp             EEEEGGGGHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHH
Confidence            89999999999988764

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.10  E-value=2.1e-11  Score=107.09  Aligned_cols=216  Identities=29%  Similarity=0.545  Sum_probs=172.6

Q ss_pred             EeCCcccCCCCCcceEEEeeeccCCCCCCeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEE
Q psy16044         27 LINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR  106 (436)
Q Consensus        27 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~  106 (436)
                      |+||.++..+||||+|+|+...      .++|+||||+++||||||||+.+..         ................+.
T Consensus         1 i~gG~~~~~~e~Pw~v~i~~~~------~~~C~GtLIs~~~VLTaAhCv~~~~---------~~~~~~~~~~~~~~~~~~   65 (237)
T d1gvza_           1 IIGGWECEKHSKPWQVAVYHQG------HFQCGGVLVHPQWVLTAAHCMSDDY---------QIWLGRHNLSKDEDTAQF   65 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT------EEEEEEEEEETTEEEECGGGCCSSC---------EEEESCSBTTSCCTTCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC------eEEEEEEEEeCCEEEeChhhccCCC---------ceeEeeeeeccccCccee
Confidence            7899999999999999998653      6899999999999999999997631         223333333333444566


Q ss_pred             EeeeEEEeCCCCC-------------CCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCC-
Q psy16044        107 IPVERIRVHEEFH-------------NYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKG-  172 (436)
Q Consensus       107 ~~v~~i~~hp~y~-------------~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~-  172 (436)
                      ..+...+.|+.|+             ...+|||||||++|+. ++..++|+|||...   ...+..+++.|||...... 
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diali~L~~pv~-~~~~v~p~~l~~~~---~~~~~~~~~~g~g~~~~~~~  141 (237)
T d1gvza_          66 HQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPAR-ITDAVKILDLPTQE---PKLGSTCYTSGWGLISTFTN  141 (237)
T ss_dssp             ECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCC-CBTTBCCCCCCSSC---CCTTCEEEEEEEECSCTTTC
T ss_pred             eeeeeEEeeeeeeeeeeecccccCccccccceEEEEECCcee-cccccccccccccc---cccceeEEEEeeeeeccccc
Confidence            7788888888875             1368999999999998 78899999999742   3356788999999775433 


Q ss_pred             CccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC---
Q psy16044        173 DLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG---  249 (436)
Q Consensus       173 ~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~---  249 (436)
                      .....|+...+++++.+.|...++...  .+.++|.....+....|.||+||||+++     |+|+||+|||...|+   
T Consensus       142 ~~~~~l~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~~~~gdsG~pl~~~-----~~l~Gv~s~g~~~c~~~~  214 (237)
T d1gvza_         142 RGSGTLQCVELRLQSNEKCARAYPEKM--TEFVLCATHRDDSGSICLGDSGGALICD-----GVFQGITSWGYSECADFN  214 (237)
T ss_dssp             SEEEEEEEEEEEEECGGGGCSSCGGGC--CTTEEEEECSSTTCEECGGGTTCEEEET-----TEEEEEECCCSSSCEETT
T ss_pred             cccceeeEEEEEeecHHHHHhhccccc--ccccccceecccccccccCCCCCcEEEc-----CEEEEEEEeccCCCCCCC
Confidence            445679999999999999998875433  3467887777777899999999999984     379999999988774   


Q ss_pred             CCcccccccceecCCcccc
Q psy16044        250 VGIRYSHRQPRLINGKESI  268 (436)
Q Consensus       250 ~~~~y~~v~~~~~~~~~~~  268 (436)
                      .+.+|++|.+|..||.+++
T Consensus       215 ~p~v~t~v~~y~~WI~~~i  233 (237)
T d1gvza_         215 DNFVFTKVMPHKKWIKETI  233 (237)
T ss_dssp             TSCCEEESGGGHHHHHHHH
T ss_pred             CCeEEEEHHHHHHHHHHHH
Confidence            4578999999999998765

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=99.07  E-value=5.3e-11  Score=103.55  Aligned_cols=86  Identities=28%  Similarity=0.472  Sum_probs=71.1

Q ss_pred             ccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC--Ccc
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV--GIR  253 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~--~~~  253 (436)
                      ..|+...+++++.++|+..+.... ..+.++|+....+..+.|.|||||||++    ++|+|+||+|||..||..  +.+
T Consensus       135 ~~l~~~~v~~i~~~~C~~~~~~~~-~~~~~~~~~~~~~~~~~c~~dsG~pl~~----~~~~l~GI~S~g~~c~~~~~p~v  209 (224)
T d1gdna_         135 VNLLKVTVPIVSRATCRAQYGTSA-ITNQMFCAGVSSGGKDSCQGDSGGPIVD----SSNTLIGAVSWGNGCARPNYSGV  209 (224)
T ss_dssp             SBCEEEEEEEECHHHHHHHHCTTT-SCTTEEEECCTTCCCBCCTTCTTCEEEC----TTCCEEEEEEECSSSSCTTCCEE
T ss_pred             CEeeeeEEEEeCHHHHhcccccCc-cccceeeeecCCCCccccccccCCceEe----cCCEEEEEEEeCCCCCCCCCCEE
Confidence            568889999999999999876533 4467888877777788999999999985    346899999999986543  468


Q ss_pred             cccccceecCCcc
Q psy16044        254 YSHRQPRLINGKE  266 (436)
Q Consensus       254 y~~v~~~~~~~~~  266 (436)
                      |++|.+|.+||++
T Consensus       210 yt~v~~y~~WIe~  222 (224)
T d1gdna_         210 YASVGALRSFIDT  222 (224)
T ss_dssp             EEETTTTHHHHHH
T ss_pred             EEEHHHHHHHHHH
Confidence            9999999999974

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=99.06  E-value=1.5e-10  Score=101.31  Aligned_cols=90  Identities=29%  Similarity=0.461  Sum_probs=72.9

Q ss_pred             ccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC---Cc
Q psy16044        176 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV---GI  252 (436)
Q Consensus       176 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~---~~  252 (436)
                      ..++...+.+++...|...+.... ....++|.....+..+.|.||+||||++.     |+|+||+|||...|+.   +.
T Consensus       135 ~~~~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~G~Pl~~~-----~~l~Gi~S~g~~~c~~~~~p~  208 (234)
T d1op0a_         135 DVPYCANINLLDHAVCQAGYPELL-AEYRTLCAGIVQGGKDTCGGDSGGPLICN-----GQFQGIVSYGAHPCGQGPKPG  208 (234)
T ss_dssp             SSCEEEEEEEECHHHHHHHCTTCC-TTSCEEEEECTTCCCBCCTTCTTCEEEET-----TEEEEEEEECCSSTTCTTSCE
T ss_pred             cccccccceEechHHhcccccCcc-eeeeeeeecccccccccccCCCCceEEEc-----CEEEEEEEEcCCCCCCCCCCe
Confidence            357888899999999998875543 33466777777777899999999999974     3799999999887864   46


Q ss_pred             ccccccceecCCccccCCC
Q psy16044        253 RYSHRQPRLINGKESIRGA  271 (436)
Q Consensus       253 ~y~~v~~~~~~~~~~~~~~  271 (436)
                      +|++|.+|..||++.+.+-
T Consensus       209 vft~v~~y~~WI~~~i~~~  227 (234)
T d1op0a_         209 IYTNVFDYTDWIQRNIAGN  227 (234)
T ss_dssp             EEEESGGGHHHHHHHHHTC
T ss_pred             EEEEHHHHHHHHHHHHhhc
Confidence            8999999999999887543

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=99.02  E-value=2.1e-10  Score=100.11  Aligned_cols=105  Identities=24%  Similarity=0.413  Sum_probs=81.1

Q ss_pred             CCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEE
Q psy16044        157 KQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWY  236 (436)
Q Consensus       157 ~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~  236 (436)
                      +..+.+.|||...   .....++...+..++.+.|...+... ...+.++|+.... ..+.|.||+||||++.   ++|+
T Consensus       120 ~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~c~~~~~~~-~~~~~~~~~~~~~-~~~~~~gdsGgp~~~~---~~~~  191 (230)
T d2hlca_         120 NIWATVSGWGQSN---TDTVILQYTYNLVIDNDRCAQEYPPG-IIVESTICGDTSD-GKSPCFGDSGGPFVLS---DKNL  191 (230)
T ss_dssp             TCEEEEEESSCCS---SCCCBCEEEEEEEECHHHHHTTSCTT-SSCTTEEEECCTT-SCBCCTTCTTCEEEEG---GGTE
T ss_pred             ceeEEEEeecccc---ccchhhheeeeccccchhhhhccccc-cccccceEecccc-CccccccccCCCeEEC---CCeE
Confidence            3567889998644   33456888999999999998876543 3345778876544 4889999999999974   5789


Q ss_pred             EEEEEeEcCCC-CC--CCcccccccceecCCccccC
Q psy16044        237 LAGITSFGSGY-CG--VGIRYSHRQPRLINGKESIR  269 (436)
Q Consensus       237 l~GI~S~g~~~-C~--~~~~y~~v~~~~~~~~~~~~  269 (436)
                      |+||+||+.++ |.  .+.+|++|.+|..||++.+.
T Consensus       192 l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~~~  227 (230)
T d2hlca_         192 LIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTG  227 (230)
T ss_dssp             EEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHC
T ss_pred             EEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            99999999875 43  34689999999999988654

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.3e-10  Score=99.40  Aligned_cols=93  Identities=31%  Similarity=0.508  Sum_probs=74.7

Q ss_pred             ccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CC
Q psy16044        174 LVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VG  251 (436)
Q Consensus       174 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~  251 (436)
                      ....++...+++.+.+.|...+....  ....+|........+.|.||+||||++.. +++|+|+||+|||..||.  .+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gd~G~pl~~~~-~~~~~l~Gi~s~g~~c~~~~~p  221 (240)
T d1autc_         145 RTFVLNFIKIPVVPHNECSEVMSNMV--SENMLCAGILGDRQDACEGDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNY  221 (240)
T ss_dssp             CSSBCEEEEEEEECHHHHHHHCSSCC--CTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCC
T ss_pred             cceeeecceeeEEeehhhhhhccccc--ccceeeeccccccCCCcCCccCceeEEcC-CCCEEEEEEEEeCCCCCCCCCC
Confidence            34567788899999999988875433  23566666666668899999999999985 689999999999988653  34


Q ss_pred             cccccccceecCCccccC
Q psy16044        252 IRYSHRQPRLINGKESIR  269 (436)
Q Consensus       252 ~~y~~v~~~~~~~~~~~~  269 (436)
                      .+|++|.+|..||++.++
T Consensus       222 ~vftrv~~y~~WI~~~i~  239 (240)
T d1autc_         222 GVYTKVSRYLDWIHGHIR  239 (240)
T ss_dssp             EEEECGGGTHHHHHHHHC
T ss_pred             eEEEEHHHHHHHHHHHhC
Confidence            689999999999988764

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.78  E-value=6.1e-09  Score=87.38  Aligned_cols=150  Identities=19%  Similarity=0.224  Sum_probs=75.8

Q ss_pred             CeeeE-EEEec---CCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEe
Q psy16044         55 PHWCG-AVLIH---PSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKL  130 (436)
Q Consensus        55 ~~~C~-GtLIs---~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L  130 (436)
                      ...|+ |..+.   .++|||||||+...       .  .+.....       ....+.......+|.     +|+||||+
T Consensus        11 ~~~CT~Gf~v~~~~~~~ilTA~Hcv~~~-------~--~~~~~~~-------~~~~~g~~~~~~~~~-----~D~All~~   69 (185)
T d2qaaa1          11 TGRCSLGFNVRSGSTYYFLTAGHCTDGA-------T--TWWANSA-------RTTVLGTTSGSSFPN-----NDYGIVRY   69 (185)
T ss_dssp             SCEEECCEEEEETTEEEEEECHHHHTTC-------C--EEESSTT-------SCSEEEEEEEEECSB-----SCEEEEEE
T ss_pred             CCcEeeeEeEEECCccEEEECCCccCCC-------C--EEEEEcC-------CCeEeeeEEeccCCC-----CCeEEEEe
Confidence            34698 88873   45999999998653       1  1222111       112233333445665     79999999


Q ss_pred             CCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEecc
Q psy16044        131 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ  210 (436)
Q Consensus       131 ~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~  210 (436)
                      +.+............+..  ...+..+..+...|+..-.    ...........+...             ....++.-.
T Consensus        70 ~~~~~~~~~~~~~~~v~~--~~~~~~G~~v~~~G~~tg~----~~g~v~~~~~~~~~~-------------~~~~~~~~~  130 (185)
T d2qaaa1          70 TNTTIPKDGTVGGQDITS--AANATVGMAVTRRGSTTGT----HSGSVTALNATVNYG-------------GGDVVYGMI  130 (185)
T ss_dssp             CCSSSCCCSEETTEECCE--ECCCCTTCEEEEEETTTEE----EEEEEEEEEEEEECS-------------TTCEEEEEE
T ss_pred             ccCCcccccccCceeccC--CCcCCCCCEEEEccCCCCc----ccceeEeeEEEEEcC-------------CCCeeeeEE
Confidence            876441111111122211  2234567788888864211    011111111111000             001122111


Q ss_pred             CCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCC
Q psy16044        211 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGV  250 (436)
Q Consensus       211 ~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~  250 (436)
                      .. ......|||||||+..   +  .++||++.+...|..
T Consensus       131 ~~-~~~~~~GdSGGPv~~~---~--~~vGi~~~g~~~~~~  164 (185)
T d2qaaa1         131 RT-NVCAEPGDSGGPLYSG---T--RAIGLTSGGSGNCSS  164 (185)
T ss_dssp             EE-SCCCCTTCTTCEEEET---T--EEEEEEEEEEEETTT
T ss_pred             EE-eeeecCCcccceeEEC---C--EEEEEEEEeecCCCC
Confidence            10 1334589999999953   3  599999998765543

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2e-09  Score=95.08  Aligned_cols=70  Identities=31%  Similarity=0.567  Sum_probs=58.9

Q ss_pred             CCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCC--CCcccccccceecCCccccCC
Q psy16044        200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG--VGIRYSHRQPRLINGKESIRG  270 (436)
Q Consensus       200 ~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~--~~~~y~~v~~~~~~~~~~~~~  270 (436)
                      .....++|+....+....|.|||||||++.. +++|+|+||+|||..||.  .+.+|++|.++..||.+++..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~-~~~~~lvGi~S~g~~c~~~~~p~vytrv~~~~~WI~~~i~~  241 (254)
T d2bz6h1         170 NITEYMFCAGYSDGSKDSCKGDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRS  241 (254)
T ss_dssp             CCCTTEEEESCSSSSCBCCGGGTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHTS
T ss_pred             cccccceeeeccCCCcccccCccccceEEcc-CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhh
Confidence            3445778887777778999999999999985 789999999999988653  456899999999999988754

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.67  E-value=2.2e-08  Score=83.54  Aligned_cols=37  Identities=43%  Similarity=0.559  Sum_probs=26.8

Q ss_pred             CCccCCCCCeeeeEecCCcEEEEEEEeEcCCCCCCC--cccccc
Q psy16044        216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG--IRYSHR  257 (436)
Q Consensus       216 ~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C~~~--~~y~~v  257 (436)
                      ...+|||||||+..   +  .++||++.|.++|...  ..|+++
T Consensus       131 ~~~~GdSGGPv~~~---~--~~vGi~sgg~~~~~~~~~~~~~pv  169 (181)
T d2sgaa_         131 CAQPGDSGGSLFAG---S--TALGLTSGGSGNCRTGGTTFYQPV  169 (181)
T ss_dssp             CCCTTCTTCEEEET---T--EEEEEEEEEEEETTTEEEEEEEEH
T ss_pred             eccCCCcCCeeEEC---C--EEEEEEEEecCCCCCCceEEEEEH
Confidence            34589999999953   3  4999999998877653  344444

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=98.66  E-value=1.4e-07  Score=79.72  Aligned_cols=30  Identities=33%  Similarity=0.394  Sum_probs=23.4

Q ss_pred             CCCccCCCCCeeeeEecCCcEEEEEEEeEcCCCC
Q psy16044        215 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC  248 (436)
Q Consensus       215 ~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~~C  248 (436)
                      ...++||||||++..  +++  ++||+|.+...+
T Consensus       136 ~~~~~GdSGGPv~~~--~g~--vvGI~sgg~~~~  165 (198)
T d2h5ca1         136 ACMGRGDSGGSWITS--AGQ--AQGVMSGGNVQS  165 (198)
T ss_dssp             SCCBTTCTTCEEECT--TCB--EEEEEEEECCCT
T ss_pred             eeeecccccccEEcC--CCE--EEEEEccccccC
Confidence            567899999999953  443  999999987644

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=98.66  E-value=7.5e-09  Score=86.75  Aligned_cols=47  Identities=26%  Similarity=0.269  Sum_probs=40.7

Q ss_pred             CCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHH
Q psy16044        374 SGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       374 ~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI  425 (436)
                      ...|.|||||||++.+     .++||.|++..|+....+.+|++|+.++++.
T Consensus       136 ~~~~~GDSGgPl~~~~-----~~vGi~s~g~~~~~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         136 ACSAGGDSGGAHFAGS-----VALGIHSGSSGCSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             CCCCTTCTTCEEEETT-----EEEEEEEEESCCBTTBCCCEEEEHHHHHHHH
T ss_pred             cccccCCCCCeEEECC-----EEEEEEEEEecCCCCCCCEEEEEHHHHHHHh
Confidence            4789999999999743     3999999999988877899999999988764

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=9.7e-08  Score=81.22  Aligned_cols=102  Identities=19%  Similarity=0.117  Sum_probs=60.9

Q ss_pred             CcceEEEeeeccCCCC----CCeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEE
Q psy16044         38 WPWQVSLQVLHPRLGL----MPHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERI  112 (436)
Q Consensus        38 ~Pw~v~i~~~~~~~~~----~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i  112 (436)
                      .|-+|.|.........    ....=+|.+|+++ +|||+|||+.+.       ..+.|....         ...+..+-+
T Consensus        20 ~~sVV~I~~~~~~~~~~~~~~~~~GSGf~i~~~G~IlT~~HVv~~~-------~~i~V~~~~---------g~~~~a~vv   83 (205)
T d1lcya2          20 APAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHVVADR-------RRVRVRLLS---------GDTYEAVVT   83 (205)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEEEEEEEETTTEEEECHHHHTTC-------SEEEEECTT---------SCEEEEEEE
T ss_pred             cCcEEEEEEEEcCcCCCCcCCCcceEEEEEECCCeEEEechhhhhh-------hhccccccc---------cccccceee
Confidence            5778888654322110    0124689999987 999999998663       334444321         122333334


Q ss_pred             EeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCc
Q psy16044        113 RVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  167 (436)
Q Consensus       113 ~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~  167 (436)
                      ...+.     .|+|||+++.+-.     +.++.+...  ..+..++.++++|+..
T Consensus        84 ~~d~~-----~dlall~~~~~~~-----~~~l~l~~~--~~~~~G~~v~~iG~P~  126 (205)
T d1lcya2          84 AVDPV-----ADIATLRIQTKEP-----LPTLPLGRS--ADVRQGEFVVAMGSPF  126 (205)
T ss_dssp             EEETT-----TTEEEEECCCSSC-----CCCCCBCCG--GGCCTTCEEEECCCTT
T ss_pred             eeecc-----eeeEEEEecCCCC-----CcEEEcccc--ccCCCCCEEEEEECCc
Confidence            44444     6999999976533     344545432  3355688888888754

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=1.2e-07  Score=81.77  Aligned_cols=171  Identities=16%  Similarity=0.141  Sum_probs=84.8

Q ss_pred             CcceEEEeeeccCCCCCCeeeEEEEecCC-EEEecCCCcCCCCCCC--CCCcceEEEeccccCCccCCceEEEeeeEEEe
Q psy16044         38 WPWQVSLQVLHPRLGLMPHWCGAVLIHPS-WVVTAAHCIHNDIFSL--PIPELWTAVLGDWDRTEEEKSEVRIPVERIRV  114 (436)
Q Consensus        38 ~Pw~v~i~~~~~~~~~~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~--~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~  114 (436)
                      -|.+|.|.......   ....+|.+|+++ +|||+||++.+.....  .....+.|.+...         ..+...-+..
T Consensus        11 ~~svV~I~~~~~~~---~~~GSGfvi~~~G~IlTn~HVV~~~~~~~~~~~~~~i~v~~~dg---------~~~~a~vi~~   78 (221)
T d2z9ia2          11 VPSVVMLETDLGRQ---SEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDG---------RTAPFTVVGA   78 (221)
T ss_dssp             GGGEEEEEEEC-------CEEEEEECCTTSEEEECHHHHHHHHCCC------EEEEEETTS---------CEECCEEEEE
T ss_pred             CCcEEEEEeccCCc---CcceEEEEEECCCEEEEcHHHhhccccccccccCceEEEEcCCc---------eeeeeeeEee
Confidence            57788887654221   456899999987 9999999985421111  1122334444221         2233333333


Q ss_pred             CCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhh
Q psy16044        115 HEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDK  194 (436)
Q Consensus       115 hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~  194 (436)
                      .+     ..|||||++..+...     .+..+..  ...+..+..+.++|+.............................
T Consensus        79 d~-----~~DlAll~~~~~~~~-----~~~~~~~--~~~~~~g~~v~~~g~p~g~~~~~~~g~~~~~~~~~~~~~~~~~~  146 (221)
T d2z9ia2          79 DP-----TSDIAVVRVQGVSGL-----TPISLGS--SSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQ  146 (221)
T ss_dssp             ET-----TTTEEEEECCSCCSC-----CCCEECC--GGGCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEEEC-------
T ss_pred             cc-----ccceeeeeecccccc-----eeecccc--ccccccCceeeeeeccCCCcccccccceeecccccccccccccc
Confidence            33     369999999877552     1122222  23356788899999764321111000111110000000000000


Q ss_pred             cCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        195 YGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       195 ~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                           ......+-.     ....-.|.|||||+-.  +|  .|+||.+....
T Consensus       147 -----~~~~~~i~~-----~~~i~~G~SGGPv~n~--~G--~vVGI~~~~~~  184 (221)
T d2z9ia2         147 -----NTVLDAIQT-----DAAINPGNSGGALVNM--NA--QLVGVNSAIAT  184 (221)
T ss_dssp             -----CCEEEEEEE-----CSCCCTTCTTEEEECT--TS--EEEEEEEEECC
T ss_pred             -----ccccceEEE-----eecccCCCCCCccCcC--CC--EEEEEEEEEec
Confidence                 000011111     1445679999999953  34  59999988654

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=6e-07  Score=76.44  Aligned_cols=162  Identities=17%  Similarity=0.146  Sum_probs=86.9

Q ss_pred             CCcceEEEeeeccCCC-----CCCeeeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeee
Q psy16044         37 AWPWQVSLQVLHPRLG-----LMPHWCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVE  110 (436)
Q Consensus        37 ~~Pw~v~i~~~~~~~~-----~~~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~  110 (436)
                      ..|-+|.|........     ....+-+|.+|+++ +|||++|.+.+.       ..+.|.+..         ...+..+
T Consensus        12 ~~~sVV~I~~~~~~~~~~~~~~~~s~GSGfvi~~~G~IlTn~HVV~~~-------~~i~v~~~~---------~~~~~~~   75 (210)
T d2qf3a1          12 AAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDA-------DQIIVALQD---------GRVFEAL   75 (210)
T ss_dssp             HGGGEEEEEEEEC----CCSCEEEEEEEEEECSTTCEEEEEHHHHTTC-------SEEEEECTT---------SCEEECE
T ss_pred             hCCceEEEEEEEeccCCCCccccccceEEEEEECCceEEechhhcccc-------ccccccccc---------ccceeeE
Confidence            4577888765321110     11346899999976 999999998652       445554421         1223344


Q ss_pred             EEEeCCCCCCCCCceeEEEeCCCCCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhh
Q psy16044        111 RIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV  190 (436)
Q Consensus       111 ~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~  190 (436)
                      -+..++.     .|+|||++..+...     .+..+..  ...+..+..+.++|+.........    ....... ....
T Consensus        76 ~~~~~~~-----~Dlall~~~~~~~~-----~~~~~~~--~~~~~~g~~v~~~G~p~~~~~~~~----~~~~~~~-~~~~  138 (210)
T d2qf3a1          76 LVGSDSL-----TDLAVLKINATGGL-----PTIPINA--RRVPHIGDVVLAIGNPYNLGQTIT----QGIISAT-GRIG  138 (210)
T ss_dssp             EEEEETT-----TTEEEEECCCSSCC-----CCCCCCT--TCCCCTTBEEEEEECGGGSSSEEE----EEEEEES-CC--
T ss_pred             Eeccccc-----cchhheeccccccc-----ccccccc--ccccccceEEEEeccccccccccc----cccceee-eeee
Confidence            4444444     79999999876441     2222322  344667888999998643321110    0000000 0000


Q ss_pred             hhhhcCCCcCCcCCeEEeccCCCCCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       191 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      ....      ....++...     ...-.|.|||||+-.  +|+  |+||++.+..
T Consensus       139 ~~~~------~~~~~i~~~-----a~i~~G~SGGPv~n~--~G~--vVGI~~~~~~  179 (210)
T d2qf3a1         139 LNPT------GRQNFLQTD-----ASINHGNSGGALVNS--LGE--LMGINTLSFD  179 (210)
T ss_dssp             -------------CCEEEC-----SCCCTTCTTCEEEET--TCC--EEEEEEEEC-
T ss_pred             eccc------cceeEEEEe-----eeEEeccCCCceEee--cCE--EEEEEEEEee
Confidence            0000      001223221     345579999999953  454  9999988654

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=8.1e-07  Score=76.58  Aligned_cols=84  Identities=18%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             eeEEEEecCC-EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCCC
Q psy16044         57 WCGAVLIHPS-WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTS  135 (436)
Q Consensus        57 ~C~GtLIs~~-~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~  135 (436)
                      ..+|.+|+++ ||||++|++.+.       ..+.|.....         .....+-+...     ...|+|||+++.+..
T Consensus        57 ~GSGfiI~~~G~IlTn~HVv~~~-------~~~~v~~~~~---------~~~~a~v~~~~-----~~~dlall~v~~~~~  115 (228)
T d1l1ja_          57 LGSGFIFDPEGYILTNYHVVGGA-------DNITVTMLDG---------SKYDAEYIGGD-----EELDIAVIKIKASDK  115 (228)
T ss_dssp             EEEEEEEETTTEEEEEHHHHSSC-------SSCEEECTTS---------CEEEBCCCEEE-----TTTTEEEEEBCCSSS
T ss_pred             ceEEEEeecCceEEeeccccccc-------ccceEEeecc---------eeEeEEEeeec-----ccccceeeEeecCCC
Confidence            6899999977 999999999663       3334433211         11222212222     236999999975432


Q ss_pred             CCCCceeeeeecCCCCCCCCCCCcEEEEecCc
Q psy16044        136 ARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  167 (436)
Q Consensus       136 ~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~  167 (436)
                          .+.++.|...  ..+..+..+.++||..
T Consensus       116 ----~~~~l~l~~s--~~~~~G~~V~aiG~P~  141 (228)
T d1l1ja_         116 ----KFPYLEFGDS--DKVKIGEWAIAIGNPL  141 (228)
T ss_dssp             ----CCCCCEECCG--GGCCTTCEEEEEECTT
T ss_pred             ----CCceEEccCc--cccccCCcEEEEECCC
Confidence                2455666542  3456789999999853

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=1.4e-06  Score=75.92  Aligned_cols=143  Identities=20%  Similarity=0.224  Sum_probs=79.6

Q ss_pred             eeeEEEEecCC--EEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCC
Q psy16044         56 HWCGAVLIHPS--WVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRP  133 (436)
Q Consensus        56 ~~C~GtLIs~~--~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~  133 (436)
                      ..=+|.+|+++  +|||.+|.+.+.       ..+.|.+...         ..+..+.+...+.     .|+|||+++.+
T Consensus        76 ~~GSG~iI~~~~g~IlTn~HVv~~~-------~~~~v~~~~~---------~~~~a~~~~~d~~-----~dlavl~i~~~  134 (249)
T d1ky9a2          76 ALGSGVIIDADKGYVVTNNHVVDNA-------TVIKVQLSDG---------RKFDAKMVGKDPR-----SDIALIQIQNP  134 (249)
T ss_dssp             EEEEEEEEETTTTEEEEEHHHHTTE-------EEEEEEETTS---------CEEEEEEEEEETT-----TTEEEEEESSC
T ss_pred             ccccEEEEeccCceEEeeccccccc-------eeeeeeeccc---------ccccceeeEeccc-----hhhceeeeccc
Confidence            35689999854  999999998652       3445544321         2344444444444     69999999865


Q ss_pred             CCCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCC
Q psy16044        134 TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDG  213 (436)
Q Consensus       134 ~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~  213 (436)
                      -.     +.++.|.+.  ..+..++.+.++|+-....     .......+...........      ....++=.     
T Consensus       135 ~~-----~~~~~l~~~--~~~~~G~~v~aiG~P~g~~-----~tvt~~~~~~~~~~~~~~~------~~~~~iqt-----  191 (249)
T d1ky9a2         135 KN-----LTAIKMADS--DALRVGDYTVAIGNPFGLG-----ETVTSGIVSALGRSGLNAE------NYENFIQT-----  191 (249)
T ss_dssp             CS-----CCCCCBCCG--GGCCTTCEEEEEECTTSSS-----CEEEEEEEEEESSCC-----------CCCCEEE-----
T ss_pred             cc-----ceEEEcCCc--CcCCcCCEEEEEecccccC-----CceeecceeecccccccCc------cccceEEE-----
Confidence            33     445566542  3456789999999853211     1111111111111100000      00111211     


Q ss_pred             CCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        214 FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       214 ~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      ....-.|.|||||+-  .+|+  |+||.+....
T Consensus       192 da~i~~GnSGGPl~n--~~G~--vIGI~t~~~~  220 (249)
T d1ky9a2         192 DAAINRGNAGGALVN--LNGE--LIGINTAILA  220 (249)
T ss_dssp             SCCCTTSCCCSEEEC--TTSC--EEEEEECSST
T ss_pred             eeeecCCCCCceEEC--CCCE--EEEEEEEEec
Confidence            144568999999984  3454  9999987643

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.80  E-value=4.4e-05  Score=64.63  Aligned_cols=123  Identities=16%  Similarity=0.175  Sum_probs=68.6

Q ss_pred             cccccccceeecccccccCCCCeeeeccCCC-CCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCC
Q psy16044        278 ITSFLSAALLKLSRPTSARDKGVRAVCLTDA-DKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD  356 (436)
Q Consensus       278 ~~~~~diali~l~~~~~~~~~~v~picl~~~-~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  356 (436)
                      .....|+|||+|..+...... ..+.+.+.. .......+....+.||.....    ........-.+...         
T Consensus        88 ~~~~~D~all~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~----~~~~~~~~~~~~~~---------  153 (216)
T d2o8la1          88 YSGEGDLAIVKFSPNEQNKHI-GEVVKPATMSNNAETQTNQNITVTGYPGDKP----VATMWESKGKITYL---------  153 (216)
T ss_dssp             CSSSSCCEEEEECCCTTSCCT-TTSSCCCEECCCTTCCTTCEEEEEECCTTSS----TTCEEEEEEEEEEE---------
T ss_pred             cccCCceEEEEeccccccccc-ccceeeeeccccccccCCceeEEEEccCCCc----eeeEEEEeeEEEEc---------
Confidence            345689999999887654332 222222211 111234567788899874321    11111222222211         


Q ss_pred             CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCc-ccHHHHHHHHhh
Q psy16044        357 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLS-FYLPWIRKQINI  431 (436)
Q Consensus       357 ~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~-~~~~WI~~~i~~  431 (436)
                          ....+..   .  -..|.|+|||||+.  ++++  ++||.++|..+..    ....++. ...+||+++|+.
T Consensus       154 ----~~~~l~~---~--~~~~~G~SGgPv~~--~~g~--vVGI~s~g~~~~~----~~~v~~~~~~~~~i~~~i~~  212 (216)
T d2o8la1         154 ----KGEAMQY---D--LSTTGGNSGSPVFN--EKNE--VIGIHWGGVPNEF----NGAVFINENVRNFLKQNIED  212 (216)
T ss_dssp             ----ETTEEEE---S--CCCCTTCTTCEEEC--TTSC--EEEEEEEEETTTE----EEEEECCHHHHHHHHHHCTT
T ss_pred             ----cCCeEEE---e--cCcCCCCCCCcEEC--CCCE--EEEEEeeecCCCC----cceEecCHHHHHHHHHhhhh
Confidence                1222221   1  25789999999983  3444  9999999864332    2233334 588999999874

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=97.78  E-value=3.5e-05  Score=64.43  Aligned_cols=158  Identities=13%  Similarity=0.077  Sum_probs=77.4

Q ss_pred             CeeeEEEEecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCC
Q psy16044         55 PHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPT  134 (436)
Q Consensus        55 ~~~C~GtLIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~  134 (436)
                      ...|.|..|..+++||++|.+...      ..  .+..+........  ........   .........|||||++++..
T Consensus        22 ~~~g~gl~v~g~~~l~~~H~~~~~------~~--~i~~~~~~~~~~~--~~~~~~~~---~v~~~d~~~Dlall~l~~~~   88 (199)
T d2bhga1          22 VAICCATGVFGTAYLVPRHLFAEK------YD--KIMLDGRAMTDSD--YRVFEFEI---KVKGQDMLSDAALMVLHRGN   88 (199)
T ss_dssp             EEEEEEEEEEBTEEEEEHHHHTSC------CS--EEEETTEEECGGG--EEEECCEE---CCSSSCEECSEEEEEESSSC
T ss_pred             EEEeEEEEEECCEEEECCcEeecC------CC--EEEEeeeEEEEEe--ccceEEEE---EEEecCCCccEEEEEcCCCC
Confidence            457999999999999999987542      11  2233221111111  01111111   11111235799999997654


Q ss_pred             CCCCCceeeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCC-CcCCcCCeEEeccCCC
Q psy16044        135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD-SVELHGGHLCGGQLDG  213 (436)
Q Consensus       135 ~~~~~~v~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~~~~~~Ca~~~~~  213 (436)
                      . +....  ..++.  ...+..+....++|+....     ...+....+.     .+...... ........+-..    
T Consensus        89 ~-~~~~~--~~~~~--~~~~~~g~~v~~ig~p~~~-----~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~y~----  149 (199)
T d2bhga1          89 K-VRDIT--KHFRD--TARMKKGTPVVGVVNNADV-----GRLIFSGEAL-----TYKDIVVSMDGDTMPGLFAYK----  149 (199)
T ss_dssp             C-BCCCG--GGBCS--SCEECTTCEEEEEEEETTT-----EEEEEEEEES-----SCEECCC-----CCTTEEEEE----
T ss_pred             c-CCccc--ccccc--cccccccceEEEEEcCCCC-----CceEEEEEEE-----EecceeecCCCccccCEEEEE----
Confidence            3 22211  11222  2334567788888875321     0011111100     00000000 000011233322    


Q ss_pred             CCCCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        214 FSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       214 ~~~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                       ..+-.|+|||||+... ++...++||.+.|.+
T Consensus       150 -a~t~~G~cGgplv~~~-~~~~~IvGih~aG~~  180 (199)
T d2bhga1         150 -AATRAGYAGGAVLAKD-GADTFIVGTHSAGGN  180 (199)
T ss_dssp             -CCCCTTCTTCEEEEEE-TTEEEEEEEEEEEET
T ss_pred             -eccCCCCcCCeEEEec-CCeEEEEEEEeCCCC
Confidence             3345799999998763 556789999998854

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.73  E-value=4.4e-05  Score=65.95  Aligned_cols=120  Identities=16%  Similarity=0.187  Sum_probs=68.3

Q ss_pred             cccccceeeccccccc---CCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCC
Q psy16044        280 SFLSAALLKLSRPTSA---RDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD  356 (436)
Q Consensus       280 ~~~diali~l~~~~~~---~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  356 (436)
                      ..+|+|||+|+.+...   ... +.|+.|.....  ...++.+++.||.....    ...+......+...         
T Consensus       117 ~~~D~All~l~~~~~~~~~~~~-~~~~~l~~s~~--~~~G~~v~~~GyP~~~~----~~~~~~~~~~~~~~---------  180 (242)
T d1agja_         117 AGVDLALIRLKPDQNGVSLGDK-ISPAKIGTSND--LKDGDKLELIGYPFDHK----VNQMHRSEIELTTL---------  180 (242)
T ss_dssp             TTSCCEEEEECCCTTSCCHHHH-SCCCEECCSTT--CCTTCEEEEEECCTTTS----TTCCEEEEEEECCG---------
T ss_pred             CcCcEEEEEecccccccccccc-Ccceeeccccc--ccCCcEEEEEEcCCCCc----cceeEecccccccc---------
Confidence            3579999999766432   222 67777765433  46889999999964221    11222222222111         


Q ss_pred             CccCCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCC-eEEEeCcccHHHHHHHHhhh
Q psy16044        357 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYP-DVYTKLSFYLPWIRKQINIA  432 (436)
Q Consensus       357 ~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p-~v~t~V~~~~~WI~~~i~~~  432 (436)
                           ...++..     ..++.|+|||||+.  .+++  |+||.+++..+...... .....   ..+||++.+++.
T Consensus       181 -----~~~~~~~-----~~~~~G~SGgPl~~--~~g~--vVGI~~~~~~~~~~~~~~~~av~---i~~~i~~~i~~~  240 (242)
T d1agja_         181 -----SRGLRYY-----GFTVPGNSGSGIFN--SNGE--LVGIHSSKVSHLDREHQINYGVG---IGNYVKRIINEK  240 (242)
T ss_dssp             -----GGSEEEE-----CCCCGGGTTCEEEC--TTSE--EEEEEEEEEECSSTTCEEEEEEE---CCHHHHHHHHHH
T ss_pred             -----cccEEEe-----cccCCccCCCcEEC--CCCe--EEEEEeEeecCCCCccceEEEEe---CHHHHHHHHHHc
Confidence                 1112211     14677999999984  3444  99999988654332222 22233   347888877654

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=97.72  E-value=0.00013  Score=61.66  Aligned_cols=138  Identities=11%  Similarity=0.030  Sum_probs=68.1

Q ss_pred             EecCCEEEecCCCcCCCCCCCCCCcceEEEeccccCCccCCceEEEeeeEEEeCCCCCCCCCceeEEEeCCCCCCCCCce
Q psy16044         62 LIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGV  141 (436)
Q Consensus        62 LIs~~~VLTAAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~DiAll~L~~~~~~~~~~v  141 (436)
                      ++...+|||.||.+...      ...+.+..-...       .....+..+.+++.   ...|||+|+++.+..      
T Consensus        33 i~~~~~IiTN~HVv~~~------~~~~~i~~~~G~-------~~~~~~~~i~i~~~---~~~DLaiik~~~~~~------   90 (219)
T d1lvmb_          33 IGFGPFIITNKHLFRRN------NGTLLVQSLHGV-------FKVKNTTTLQQHLI---DGRDMIIIRMPKDFP------   90 (219)
T ss_dssp             EEETTEEEECGGGGSCC------SEEEEEEETTEE-------EEESCGGGSEEEEC---TTSSCEEEECCTTSC------
T ss_pred             EEeCCEEEECccccccC------CceEEEEEcCCc-------EeecceEEEEeeec---CCccEEEEEcCCCCC------
Confidence            55678999999998652      122333221100       01111111112211   236999999976543      


Q ss_pred             eeeeecCCCCCCCCCCCcEEEEecCccCCCCCccccceeeeeeccchhhhhhhcCCCcCCcCCeEEeccCCCCCCCccCC
Q psy16044        142 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGD  221 (436)
Q Consensus       142 ~pi~l~~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gD  221 (436)
                      ..+.+..  ...+..++.+.++|+...... ... ..... ..+...       .     ...++-.     ...+-.|+
T Consensus        91 p~~~l~~--~~~~~~Ge~V~aiG~p~~~~~-~~~-~v~~~-~~~~~~-------~-----~~~~~~~-----~~~t~~Gn  148 (219)
T d1lvmb_          91 PFPQKLK--FREPQREERICLVTTNFQTKS-MSS-MVSDT-SCTFPS-------S-----DGIFWKH-----WIQTKDGQ  148 (219)
T ss_dssp             CCCSCCC--BCCCCTTCEEEEEEECCSCGG-GCE-EECCC-EECEEE-------T-----TTTEEEE-----CBCCCTTC
T ss_pred             Ccceecc--cCCCCcCCEEEEEEccCCCCc-eEE-EEecc-ceeecc-------C-----CCceEEE-----EEEcCCCC
Confidence            1122322  244567899999997532210 000 00000 000000       0     0111111     14567899


Q ss_pred             CCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        222 SGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       222 sGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      |||||+-. .+|+  ++||.+.+..
T Consensus       149 SGGPlvd~-~dG~--VVGIhs~~~~  170 (219)
T d1lvmb_         149 CGSPLVST-RDGF--IVGIHSASNF  170 (219)
T ss_dssp             TTCEEEET-TTCC--EEEEEEEEET
T ss_pred             CCCceEEc-CCCE--EEEEEEeeec
Confidence            99999953 2343  9999998754

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=97.37  E-value=7.1e-05  Score=61.46  Aligned_cols=45  Identities=36%  Similarity=0.426  Sum_probs=34.8

Q ss_pred             CccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHH
Q psy16044        376 ACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWI  425 (436)
Q Consensus       376 ~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI  425 (436)
                      ...|||||||+..   +  .++||+|++..++......+|+.|..+++++
T Consensus       132 ~~~GdSGGPv~~~---~--~~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         132 AQPGDSGGSLFAG---S--TALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             CCTTCTTCEEEET---T--EEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             ccCCCcCCeeEEC---C--EEEEEEEEecCCCCCCceEEEEEHHHHHHHh
Confidence            3469999999963   3  3999999987665544468999998887765

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=96.34  E-value=0.0019  Score=52.68  Aligned_cols=39  Identities=41%  Similarity=0.555  Sum_probs=26.6

Q ss_pred             CccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCc
Q psy16044        376 ACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLS  419 (436)
Q Consensus       376 ~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~  419 (436)
                      ...|||||||+..   +  .++||.+.+..++.......|+.|.
T Consensus       136 ~~~GdSGGPv~~~---~--~~vGi~~~g~~~~~~~~~~~~~Pi~  174 (185)
T d2qaaa1         136 AEPGDSGGPLYSG---T--RAIGLTSGGSGNCSSGGTTFFQPVT  174 (185)
T ss_dssp             CCTTCTTCEEEET---T--EEEEEEEEEEEETTTEEEEEEEEHH
T ss_pred             ecCCcccceeEEC---C--EEEEEEEEeecCCCCCceEEEEEHH
Confidence            4469999999963   3  3999999986554433345566643

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.86  E-value=0.0081  Score=51.23  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=66.0

Q ss_pred             ccccceeecccccccCCCCeeeeccC-CCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCcc
Q psy16044        281 FLSAALLKLSRPTSARDKGVRAVCLT-DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE  359 (436)
Q Consensus       281 ~~diali~l~~~~~~~~~~v~picl~-~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  359 (436)
                      ..|+|||+|..+...... ..+.+.. .........++...+.||......    ...........+         .   
T Consensus       112 ~~DiAll~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~~G~P~~~~~----~~~~~~~~~~~~---------~---  174 (246)
T d1qtfa_         112 GLDLAIIKLKPNEKGESA-GDLIQPANIPDHIDIAKGDKYSLLGYPYNYSA----YSLYQSQIEMFN---------D---  174 (246)
T ss_dssp             TSCCEEEEECCCTTSCCH-HHHSCCCCCCSSCCCCTTCEEEEEECCTTTST----TCCEEEEEEESS---------S---
T ss_pred             cCceEEEEeccccccccc-cccCceeeccccccccCCCEEEEEeCCCCCCc----ceeeccceEeCC---------C---
Confidence            469999999876543322 2222221 112223567888999998643211    111111111110         0   


Q ss_pred             CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCC--------CCCCeEEEeCcccHHHHHHHHhh
Q psy16044        360 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAK--------SGYPDVYTKLSFYLPWIRKQINI  431 (436)
Q Consensus       360 ~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~--------~~~p~v~t~V~~~~~WI~~~i~~  431 (436)
                        ..+.        ..+..|+|||||+-  .+++  +|||.+.+.+-..        ...-.++.....|.+||.+.|++
T Consensus       175 --~~~~--------~~~~~G~SGgPv~n--~~G~--vVGI~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (246)
T d1qtfa_         175 --SQYF--------GYTEVGNSGSGIFN--LKGE--LIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDTLGNDLKK  240 (246)
T ss_dssp             --SBEE--------SCCCGGGTTCEEEC--TTCC--EEEEEEEEETTTTEEEEEETTCBCCTTTSTTCCSSCBHHHHHHH
T ss_pred             --ceEE--------eeccCCCCCCcEEC--CCCe--EEEEEecccCCCCCccceEeecccchhhhhhHHHHHHHHHHhhh
Confidence              0011        13456999999984  2444  9999987643111        11124456677788999888866


Q ss_pred             hh
Q psy16044        432 AV  433 (436)
Q Consensus       432 ~~  433 (436)
                      ..
T Consensus       241 ~~  242 (246)
T d1qtfa_         241 RA  242 (246)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=94.27  E-value=0.17  Score=40.32  Aligned_cols=26  Identities=31%  Similarity=0.259  Sum_probs=20.5

Q ss_pred             CCccCCCCCeeeeEecCCcEEEEEEEeEcCC
Q psy16044        216 GACIGDSGGPLQCSLKDGRWYLAGITSFGSG  246 (436)
Q Consensus       216 ~~C~gDsGgPl~~~~~~~~~~l~GI~S~g~~  246 (436)
                      .+-.|+.||||+.+.     .++||.+.|.+
T Consensus       141 ~t~~g~cg~~~~~~~-----~i~G~h~~g~~  166 (180)
T d1cqqa_         141 PTKSGYCGGVLYKIG-----QVLGIHVGGNG  166 (180)
T ss_dssp             CCCTTCTTCEEEETT-----EEEEEEEEECS
T ss_pred             cCCCcccCCeEEECC-----CEEEEEeccCC
Confidence            355799999999643     39999998865

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=94.08  E-value=0.14  Score=42.33  Aligned_cols=48  Identities=23%  Similarity=0.391  Sum_probs=32.6

Q ss_pred             CCccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcc-cHHHHHHH
Q psy16044        375 GACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSF-YLPWIRKQ  428 (436)
Q Consensus       375 ~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~-~~~WI~~~  428 (436)
                      .+-.|+|||||+.. ++|+  ++||.|.+..-.   .-..|+-|.. |.++|.+.
T Consensus       143 ~t~~GnSGGPlvd~-~dG~--VVGIhs~~~~~~---~~n~~~~i~~~~~~~l~~~  191 (219)
T d1lvmb_         143 QTKDGQCGSPLVST-RDGF--IVGIHSASNFTN---TNNYFTSVPKNFMELLTNQ  191 (219)
T ss_dssp             CCCTTCTTCEEEET-TTCC--EEEEEEEEETTS---SSEEEEECCTTHHHHHHCG
T ss_pred             EcCCCCCCCceEEc-CCCE--EEEEEEeeeccc---ceEEEEecCHHHHHHHhhc
Confidence            34569999999963 2343  999999875322   2457888854 77776654

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=93.56  E-value=0.31  Score=39.18  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             ccCCCCceeeeEecCCcEEEEEEEEecCCCCCCCCCeEEEeCcccHHHHHH
Q psy16044        377 CIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRK  427 (436)
Q Consensus       377 c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~V~~~~~WI~~  427 (436)
                      -.|++||||+... +....++||.+.|.+.     .+..+.|+  +++|++
T Consensus       153 ~~G~cGgplv~~~-~~~~~IvGih~aG~~g-----~G~a~~it--~e~i~~  195 (199)
T d2bhga1         153 RAGYAGGAVLAKD-GADTFIVGTHSAGGNG-----VGYCSCVS--RSMLQK  195 (199)
T ss_dssp             CTTCTTCEEEEEE-TTEEEEEEEEEEEETT-----EEEEEECC--HHHHHH
T ss_pred             CCCCcCCeEEEec-CCeEEEEEEEeCCCCC-----EEEEEEcc--HHHHHH
Confidence            4599999998764 4556799999987532     35666675  566664

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.57  Score=37.93  Aligned_cols=99  Identities=19%  Similarity=0.141  Sum_probs=49.6

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCcc
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE  359 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  359 (436)
                      ...|+||+++..+....     +..+  .....+..++.+...|+......     ..........   ........   
T Consensus        81 ~~~Dlall~~~~~~~~~-----~~~~--~~~~~~~~g~~v~~~G~p~~~~~-----~~~~~~~~~~---~~~~~~~~---  142 (210)
T d2qf3a1          81 SLTDLAVLKINATGGLP-----TIPI--NARRVPHIGDVVLAIGNPYNLGQ-----TITQGIISAT---GRIGLNPT---  142 (210)
T ss_dssp             TTTTEEEEECCCSSCCC-----CCCC--CTTCCCCTTBEEEEEECGGGSSS-----EEEEEEEEES---CC---------
T ss_pred             cccchhheecccccccc-----cccc--ccccccccceEEEEecccccccc-----ccccccceee---eeeeeccc---
Confidence            45899999998764422     1222  22334678899999998643211     1111111111   11111100   


Q ss_pred             CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCC
Q psy16044        360 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG  405 (436)
Q Consensus       360 ~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~  405 (436)
                      -...++....     ..-.|+|||||+..  +|+  ++||.+.+..
T Consensus       143 ~~~~~i~~~a-----~i~~G~SGGPv~n~--~G~--vVGI~~~~~~  179 (210)
T d2qf3a1         143 GRQNFLQTDA-----SINHGNSGGALVNS--LGE--LMGINTLSFD  179 (210)
T ss_dssp             ---CCEEECS-----CCCTTCTTCEEEET--TCC--EEEEEEEEC-
T ss_pred             cceeEEEEee-----eEEeccCCCceEee--cCE--EEEEEEEEee
Confidence            1112333211     23458899999863  455  9999988654

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.44  E-value=0.19  Score=41.73  Aligned_cols=42  Identities=17%  Similarity=0.147  Sum_probs=26.4

Q ss_pred             ccccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCC
Q psy16044        279 TSFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  326 (436)
Q Consensus       279 ~~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~  326 (436)
                      ....|+||+++..+..-    ..++.|...  .....++.+++.|+-.
T Consensus       100 ~~~~dlall~v~~~~~~----~~~l~l~~s--~~~~~G~~V~aiG~P~  141 (228)
T d1l1ja_         100 DEELDIAVIKIKASDKK----FPYLEFGDS--DKVKIGEWAIAIGNPL  141 (228)
T ss_dssp             ETTTTEEEEEBCCSSSC----CCCCEECCG--GGCCTTCEEEEEECTT
T ss_pred             cccccceeeEeecCCCC----CceEEccCc--cccccCCcEEEEECCC
Confidence            34579999998754221    334444322  2356899999999863

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.79  Score=38.27  Aligned_cols=123  Identities=16%  Similarity=0.096  Sum_probs=61.0

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCCCCCCCCccccceEEEEEeeCccccccccCCCcc
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVE  359 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  359 (436)
                      ...|+|||+++.+-.     +.++.|...+  ....++.+++.|+-...     ........+......   ....   .
T Consensus       122 ~~~dlavl~i~~~~~-----~~~~~l~~~~--~~~~G~~v~aiG~P~g~-----~~tvt~~~~~~~~~~---~~~~---~  183 (249)
T d1ky9a2         122 PRSDIALIQIQNPKN-----LTAIKMADSD--ALRVGDYTVAIGNPFGL-----GETVTSGIVSALGRS---GLNA---E  183 (249)
T ss_dssp             TTTTEEEEEESSCCS-----CCCCCBCCGG--GCCTTCEEEEEECTTSS-----SCEEEEEEEEEESSC---C-------
T ss_pred             cchhhceeeeccccc-----ceEEEcCCcC--cCCcCCEEEEEeccccc-----CCceeecceeecccc---cccC---c
Confidence            457999999986533     4445554332  35689999999975321     111111111111111   1000   0


Q ss_pred             CCCCceecccCCCCCCCccCCCCceeeeEecCCcEEEEEEEEecCCCCC-CCCCeEEEeCcccHHHHHHHH
Q psy16044        360 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAK-SGYPDVYTKLSFYLPWIRKQI  429 (436)
Q Consensus       360 ~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~~c~~-~~~p~v~t~V~~~~~WI~~~i  429 (436)
                      ...++|=..     ...-.|+|||||+..  .|+  |+||.+....-.. ........-+...++++.+.+
T Consensus       184 ~~~~~iqtd-----a~i~~GnSGGPl~n~--~G~--vIGI~t~~~~~~~~~~gi~faIP~~~~~~~~~~l~  245 (249)
T d1ky9a2         184 NYENFIQTD-----AAINRGNAGGALVNL--NGE--LIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMV  245 (249)
T ss_dssp             -CCCCEEES-----CCCTTSCCCSEEECT--TSC--EEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHH
T ss_pred             cccceEEEe-----eeecCCCCCceEECC--CCE--EEEEEEEEeccCCCcccEEEEEEHHHHHHHHHHHH
Confidence            111222111     134458999999853  455  9999988653221 111233344444455555444

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.18  E-value=0.35  Score=39.63  Aligned_cols=40  Identities=13%  Similarity=0.076  Sum_probs=25.1

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCC
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  326 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~  326 (436)
                      ...|+||+++..+......     .+.  +...+..++.+.+.|+-.
T Consensus        80 ~~~DlAll~~~~~~~~~~~-----~~~--~~~~~~~g~~v~~~g~p~  119 (221)
T d2z9ia2          80 PTSDIAVVRVQGVSGLTPI-----SLG--SSSDLRVGQPVLAIGSPL  119 (221)
T ss_dssp             TTTTEEEEECCSCCSCCCC-----EEC--CGGGCCTTCEEEEEECGG
T ss_pred             cccceeeeeecccccceee-----ccc--cccccccCceeeeeeccC
Confidence            3579999999886543221     111  111356788899998763

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.33  E-value=0.55  Score=37.88  Aligned_cols=40  Identities=18%  Similarity=0.144  Sum_probs=25.1

Q ss_pred             cccccceeecccccccCCCCeeeeccCCCCCCCCCCCCeEEEEecCC
Q psy16044        280 SFLSAALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGR  326 (436)
Q Consensus       280 ~~~diali~l~~~~~~~~~~v~picl~~~~~~~~~~~~~~~~~Gwg~  326 (436)
                      ...|+||++++.+..     +.++.+...  ..+..++.+++.|+-.
T Consensus        87 ~~~dlall~~~~~~~-----~~~l~l~~~--~~~~~G~~v~~iG~P~  126 (205)
T d1lcya2          87 PVADIATLRIQTKEP-----LPTLPLGRS--ADVRQGEFVVAMGSPF  126 (205)
T ss_dssp             TTTTEEEEECCCSSC-----CCCCCBCCG--GGCCTTCEEEECCCTT
T ss_pred             cceeeEEEEecCCCC-----CcEEEcccc--ccCCCCCEEEEEECCc
Confidence            357999999876433     333333322  2356788999988753

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=89.76  E-value=0.059  Score=43.73  Aligned_cols=26  Identities=38%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             CCccCCCCceeeeEecCCcEEEEEEEEecC
Q psy16044        375 GACIGDSGGPLQCSLKDGRWYLAGITSFGS  404 (436)
Q Consensus       375 ~~c~gdsGgpl~~~~~~~~~~l~Gi~S~~~  404 (436)
                      ..+.||||||++..  +++  ++||.|.+.
T Consensus       137 ~~~~GdSGGPv~~~--~g~--vvGI~sgg~  162 (198)
T d2h5ca1         137 CMGRGDSGGSWITS--AGQ--AQGVMSGGN  162 (198)
T ss_dssp             CCBTTCTTCEEECT--TCB--EEEEEEEEC
T ss_pred             eeecccccccEEcC--CCE--EEEEEcccc
Confidence            45789999999863  444  999999875