Psyllid ID: psy16486

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHccccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHEcccccccccEEEEccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
fsrdpedvknneDKIYSIAKRyggipagesngrrgYMLTYIIAYIRDFACdyyfigdsfetsvpwdkTVLLCINVKKRltrectvsngllefrsetkkegnlgfrkrqgekkkkNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE
Flexible Loop (DISEMBL)
fsrdpedvknnedkiysiakryggipagesngrRGYMLTYIIAYIRDFACDYYFIGDSfetsvpwdkTVLLCINVkkrltrectvsngllefrsetkkegnlgfrkrqgekkkkneekeeekkkkeeeekkkkeekereeekreeenvee
Low Complexity Region (SEG)
FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGekkkkneekeeekkkkeeeekkkkeekereeekreeenvee
Disordered region (IsUnstruct)
**************IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSNGLLEF**********************************************************
Disordered Region (DISOPRED)
FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEE*********************************
Disordered Region (DISEMBL)
*********NNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFR*********************************************
Disordered Region (DISPRO)
**RDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKE************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
O00116	658	Alkyldihydroxyacetonephos	yes	N/A	0.553	0.126	0.602	1e-25
Q8C0I1	645	Alkyldihydroxyacetonephos	yes	N/A	0.553	0.128	0.578	2e-24
P97275	658	Alkyldihydroxyacetonephos	yes	N/A	0.553	0.126	0.578	3e-24
Q9EQR2	644	Alkyldihydroxyacetonephos	yes	N/A	0.553	0.128	0.554	8e-24
Q9V778	631	Alkyldihydroxyacetonephos	yes	N/A	0.56	0.133	0.523	1e-20
O45218	597	Alkyldihydroxyacetonephos	yes	N/A	0.513	0.128	0.454	1e-15

>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 529

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 530 TSAPWDRVVDLCRNVKERITREC 552

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 6

>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus musculus GN=Agps PE=1 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 63/83 (75%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+SFE
Sbjct: 457 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFE 516

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ + LC NVK+R+ REC
Sbjct: 517 TSAPWDRVIDLCRNVKERIRREC 539

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus GN=AGPS PE=1 SV=1

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 63/83 (75%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFE
Sbjct: 470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFE 529

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+ REC
Sbjct: 530 TSAPWDRVVDLCRNVKERIRREC 552

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus GN=Agps PE=2 SV=1

 Score =  109 bits (272), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 63/83 (75%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+SFE
Sbjct: 456 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGESFE 515

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ + LC NVK+R+ REC
Sbjct: 516 TSAPWDRVIDLCRNVKERIRREC 538

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 59/84 (70%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D +DV+  E  IY IA+++ G PAG  NG RGY+LT++IAYIRDF      + +SFE
Sbjct: 422 FEGDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAESFE 481

Query: 61  TSVPWDKTVLLCINVKKRLTRECT 84
           TSVPWD+  LLC +VK+R+  EC+
Sbjct: 482 TSVPWDRCSLLCRSVKQRVVSECS 505

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans GN=ads-1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 6   EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPW 65
           E+V  +E+++  +A+++ G+  G  NG+ GY LT+ IAY+RD   ++  +G+SFETSVPW
Sbjct: 404 EEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETSVPW 463

Query: 66  DKTVLLCINVKKRLTRE 82
           DK + LC NVK+ + RE
Sbjct: 464 DKVLSLCRNVKELMKRE 480

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
402888755	660	PREDICTED: alkyldihydroxyacetonephosphat	0.553	0.125	0.602	5e-24
426337844	626	PREDICTED: alkyldihydroxyacetonephosphat	0.553	0.132	0.602	7e-24
297668926	668	PREDICTED: alkyldihydroxyacetonephosphat	0.553	0.124	0.602	7e-24
397489093	658	PREDICTED: alkyldihydroxyacetonephosphat	0.553	0.126	0.602	7e-24
119631463	684	alkylglycerone phosphate synthase, isofo	0.553	0.121	0.602	7e-24
410035918	658	PREDICTED: alkyldihydroxyacetonephosphat	0.553	0.126	0.602	7e-24
4501993	658	alkyldihydroxyacetonephosphate synthase,	0.553	0.126	0.602	7e-24
147907126	627	alkyldihydroxyacetonephosphate synthase,	0.553	0.132	0.590	7e-24
441668210	656	PREDICTED: alkyldihydroxyacetonephosphat	0.553	0.126	0.602	8e-24
390464346	652	PREDICTED: alkyldihydroxyacetonephosphat	0.553	0.127	0.602	8e-24

>gi|402888755|ref|XP_003907714.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Papio anubis]

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 472 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 531

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 532 TSAPWDRVVDLCRNVKERITREC 554

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426337844|ref|XP_004032904.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Gorilla gorilla gorilla]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 438 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 497

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 498 TSAPWDRVVDLCRNVKERITREC 520

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297668926|ref|XP_002812675.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Pongo abelii]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 480 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 539

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 540 TSAPWDRVVDLCRNVKERITREC 562

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397489093|ref|XP_003815571.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Pan paniscus]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 529

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 530 TSAPWDRVVDLCRNVKERITREC 552

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119631463|gb|EAX11058.1| alkylglycerone phosphate synthase, isoform CRA_b [Homo sapiens]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 496 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 555

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 556 TSAPWDRVVDLCRNVKERITREC 578

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410035918|ref|XP_001154263.3| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 4 [Pan troglodytes] gi|410263926|gb|JAA19929.1| alkylglycerone phosphate synthase [Pan troglodytes] gi|410360448|gb|JAA44733.1| alkylglycerone phosphate synthase [Pan troglodytes]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 529

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 530 TSAPWDRVVDLCRNVKERITREC 552

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|4501993|ref|NP_003650.1| alkyldihydroxyacetonephosphate synthase, peroxisomal precursor [Homo sapiens] gi|2498106|sp|O00116.1|ADAS_HUMAN RecName: Full=Alkyldihydroxyacetonephosphate synthase, peroxisomal; Short=Alkyl-DHAP synthase; AltName: Full=Aging-associated gene 5 protein; AltName: Full=Alkylglycerone-phosphate synthase; Flags: Precursor gi|1922285|emb|CAA70591.1| alkyl-dihydroxyacetonephosphate synthase precursor [Homo sapiens] gi|47118009|gb|AAT11152.1| aging-associated protein 5 [Homo sapiens] gi|146327787|gb|AAI41821.1| Alkylglycerone phosphate synthase [Homo sapiens] gi|189054871|dbj|BAG36924.1| unnamed protein product [Homo sapiens]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 529

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 530 TSAPWDRVVDLCRNVKERITREC 552

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147907126|ref|NP_001086573.1| alkyldihydroxyacetonephosphate synthase, peroxisomal [Xenopus laevis] gi|49903684|gb|AAH76825.1| Agps-prov protein [Xenopus laevis]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 64/83 (77%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+SFE
Sbjct: 439 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYLRDLGMDYYLIGESFE 498

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TSVPWD+ + LC NVK+R+ REC
Sbjct: 499 TSVPWDRVLDLCRNVKERIVREC 521

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|441668210|ref|XP_003253813.2| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Nomascus leucogenys]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 468 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 527

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 528 TSAPWDRVVDLCRNVKERITREC 550

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390464346|ref|XP_002749324.2| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Callithrix jacchus]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct: 464 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 523

Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+TREC
Sbjct: 524 TSAPWDRVVDLCKNVKERITREC 546

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
UNIPROTKB|O00116	658	AGPS "Alkyldihydroxyacetonepho	0.553	0.126	0.602	2.3e-24
UNIPROTKB|E1BPV2	576	AGPS "Uncharacterized protein"	0.553	0.144	0.590	3.4e-24
UNIPROTKB|E2QVV9	653	AGPS "Uncharacterized protein"	0.553	0.127	0.590	4.8e-24
UNIPROTKB|F6Y1U6	663	AGPS "Uncharacterized protein"	0.553	0.125	0.590	4.9e-24
UNIPROTKB|J9NZ69	699	AGPS "Uncharacterized protein"	0.553	0.118	0.590	5.6e-24
UNIPROTKB|I3LM15	646	AGPS "Uncharacterized protein"	0.553	0.128	0.590	5.9e-24
UNIPROTKB|F1P5J7	638	AGPS "Uncharacterized protein"	0.553	0.130	0.590	7.4e-24
MGI|MGI:2443065	645	Agps "alkylglycerone phosphate	0.553	0.128	0.578	2.1e-23
UNIPROTKB|P97275	658	AGPS "Alkyldihydroxyacetonepho	0.553	0.126	0.578	2.8e-23
RGD|620364	644	Agps "alkylglycerone phosphate	0.553	0.128	0.554	5.5e-23

UNIPROTKB|O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFE
Sbjct:   470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFE 529

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TS PWD+ V LC NVK+R+TREC
Sbjct:   530 TSAPWDRVVDLCRNVKERITREC 552

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS;TAS

GO:0071949 "FAD binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BPV2 AGPS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 284 (105.0 bits), Expect = 3.4e-24, P = 3.4e-24
 Identities = 49/83 (59%), Positives = 64/83 (77%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFE
Sbjct:   388 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFE 447

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TS PWD+ V LC NVK+R+TREC
Sbjct:   448 TSAPWDRVVDLCRNVKERITREC 470

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|E2QVV9 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 284 (105.0 bits), Expect = 4.8e-24, P = 4.8e-24
 Identities = 49/83 (59%), Positives = 64/83 (77%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFE
Sbjct:   465 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFE 524

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TS PWD+ V LC NVK+R+TREC
Sbjct:   525 TSAPWDRVVDLCRNVKERITREC 547

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|F6Y1U6 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 284 (105.0 bits), Expect = 4.9e-24, P = 4.9e-24
 Identities = 49/83 (59%), Positives = 64/83 (77%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFE
Sbjct:   475 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFE 534

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TS PWD+ V LC NVK+R+TREC
Sbjct:   535 TSAPWDRVVDLCRNVKERITREC 557

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|J9NZ69 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 284 (105.0 bits), Expect = 5.6e-24, P = 5.6e-24
 Identities = 49/83 (59%), Positives = 64/83 (77%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFE
Sbjct:   471 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFE 530

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TS PWD+ V LC NVK+R+TREC
Sbjct:   531 TSAPWDRVVDLCRNVKERITREC 553

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|I3LM15 AGPS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 283 (104.7 bits), Expect = 5.9e-24, P = 5.9e-24
 Identities = 49/83 (59%), Positives = 64/83 (77%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFE
Sbjct:   498 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVLGESFE 557

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TS PWD+ V LC NVK+R+TREC
Sbjct:   558 TSAPWDRVVDLCRNVKERITREC 580

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1P5J7 AGPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 282 (104.3 bits), Expect = 7.4e-24, P = 7.4e-24
 Identities = 49/83 (59%), Positives = 64/83 (77%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+SFE
Sbjct:   450 FEGDREKVLQHEKQVYDIATKFGGLAAGEDNGQRGYMLTFVIAYLRDLGLDYYVIGESFE 509

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TSVPWD+ + LC NVK+R+ REC
Sbjct:   510 TSVPWDRVLDLCRNVKERIVREC 532

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

MGI|MGI:2443065 Agps "alkylglycerone phosphate synthase" [Mus musculus (taxid:10090)]

 Score = 278 (102.9 bits), Expect = 2.1e-23, P = 2.1e-23
 Identities = 48/83 (57%), Positives = 63/83 (75%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+SFE
Sbjct:   457 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFE 516

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TS PWD+ + LC NVK+R+ REC
Sbjct:   517 TSAPWDRVIDLCRNVKERIRREC 539

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P97275 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Cavia porcellus (taxid:10141)]

 Score = 277 (102.6 bits), Expect = 2.8e-23, P = 2.8e-23
 Identities = 48/83 (57%), Positives = 63/83 (75%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFE
Sbjct:   470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFE 529

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TS PWD+ V LC NVK+R+ REC
Sbjct:   530 TSAPWDRVVDLCRNVKERIRREC 552

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0008611 "ether lipid biosynthetic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

RGD|620364 Agps "alkylglycerone phosphate synthase" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 5.5e-23, P = 5.5e-23
 Identities = 46/83 (55%), Positives = 63/83 (75%)

Query:     1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
             F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+SFE
Sbjct:   456 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGESFE 515

Query:    61 TSVPWDKTVLLCINVKKRLTREC 83
             TS PWD+ + LC NVK+R+ REC
Sbjct:   516 TSAPWDRVIDLCRNVKERIRREC 538

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005777 "peroxisome" evidence=ISO;IDA;TAS

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO;IDA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0071949 "FAD binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EQR2	ADAS_RAT	2, ., 5, ., 1, ., 2, 6	0.5542	0.5533	0.1288	yes	N/A
O00116	ADAS_HUMAN	2, ., 5, ., 1, ., 2, 6	0.6024	0.5533	0.1261	yes	N/A
P97275	ADAS_CAVPO	2, ., 5, ., 1, ., 2, 6	0.5783	0.5533	0.1261	yes	N/A
Q9V778	ADAS_DROME	2, ., 5, ., 1, ., 2, 6	0.5238	0.56	0.1331	yes	N/A
Q8C0I1	ADAS_MOUSE	2, ., 5, ., 1, ., 2, 6	0.5783	0.5533	0.1286	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	150
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-04
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	4e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	8e-04
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	9e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.002
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
           +KR+   +K   E E++ +++ E EK+K++E+ERE E+  E  
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERA 621

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 113 KKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVE 149
           KK EE  E  K K E E+K +EE+ERE+EK +E   E
Sbjct: 579 KKREEAVE--KAKREAEQKAREEREREKEKEKERERE 613

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
            K++ E+KK+ ++K    KKKEEEE+++KE+KE E+E+ EEE  EE
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 106 KRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
           K   + +KK EE+++EKKKK    KKK+EE+E E+EK+EEE  EE
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 24/61 (39%), Positives = 40/61 (65%)

Query: 90  LEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVE 149
           +EF + +KK      +  +  +KK+ EEK+E+KKK    +KK++EE+E +E+K EE+  E
Sbjct: 399 IEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458

Query: 150 E 150
           E
Sbjct: 459 E 459

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 18/59 (30%), Positives = 36/59 (61%)

Query: 92  FRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
                K    +     + EKK++ E+KE++KK    ++K+++EE+E+E+++ E+E  EE
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 20/52 (38%), Positives = 34/52 (65%)

Query: 98  KEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVE 149
           K+   G     G     +EE+EEE++++EEEE++++EE+E EEE  E  ++E
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 19/57 (33%), Positives = 39/57 (68%)

Query: 94  SETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
           +  K +  +   +++ E++KK ++K+    KK+EEE+++++EK+ EE++ EEE  EE
Sbjct: 408 ATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464

Length = 482

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 14/37 (37%), Positives = 27/37 (72%)

Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
           E +++ EEKE  K++K   + KK+EEK+++E ++ E+
Sbjct: 552 ELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588

Length = 651

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 22/51 (43%), Positives = 35/51 (68%)

Query: 97  KKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
           KK       K++     K +E+EEE++K+++EE+K++EE+E EEEK EEE 
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 91  EFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
           E  +E + E     +   G       + EEE++++EEEE++++EE+E EEE+ E E
Sbjct: 836 ELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 21/46 (45%), Positives = 34/46 (73%)

Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
           R+ + ++KKK     ++K+++EEEEK+KKEE++ EEE+  EE  EE
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468

Length = 482

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 14/35 (40%), Positives = 27/35 (77%)

Query: 106 KRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREE 140
           +R+ E+K+  +E++  +K K++EEKKKKE ++ E+
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588

Length = 651

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 107 RQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
           +Q EK        +    +EEEE++++EE+E EEE+ EEE  EE
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEE 889

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 97  KKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKER 138
           K+E  +   KR+ E+K + EE+E EK+K++E E++++ E ER
Sbjct: 580 KREEAVEKAKREAEQKAR-EEREREKEKEKEREREREREAER 620

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 22/41 (53%), Positives = 33/41 (80%)

Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
           EKKKK    +++++++EEE++KK+EEKE EEE+ EEE  EE
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 20/46 (43%), Positives = 35/46 (76%)

Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
           +KR+ EKK+K ++    KKK+EEEE++K++++E +EE+ EE   E+
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466

Length = 482

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG1233|consensus	613		99.85
PF02913	248	FAD-oxidase_C: FAD linked oxidases, C-terminal dom	98.42
TIGR00387	413	glcD glycolate oxidase, subunit GlcD. This protein	98.01
PRK11230	499	glycolate oxidase subunit GlcD; Provisional	97.33
PLN02805	555	D-lactate dehydrogenase [cytochrome]	96.89
COG3286	204	Uncharacterized protein conserved in archaea [Func	88.28

>KOG1233|consensus

Probab=99.85  E-value=4.6e-22  Score=178.00  Aligned_cols=98  Identities=44%  Similarity=0.828  Sum_probs=93.4

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccCCCccchhhhhhhchhhhhhHHHHhcccceeeeecccccCChHHHHHHHHHHHH
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT   80 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~lG~~~G~~W~~~RF~~PYLRD~Lld~Gi~vDTfETAvtWs~v~~L~~~Vk~Al~   80 (150)
                      |||+.++|+++.++++.|+.+++|+++|..+|+.+|..+|.++||||+.+.+|+++++||||||||++..||++|++++.
T Consensus       425 fEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKer~~  504 (613)
T KOG1233|consen  425 FEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKERMK  504 (613)
T ss_pred             ecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCceEE-Eeecc
Q psy16486         81 RECTVSNGLLEFR-SETKK   98 (150)
Q Consensus        81 ~al~~~G~~~~~V-~CH~~   98 (150)
                      +.|+++|+..+.+ .|+.-
T Consensus       505 rEck~~gv~~~~~s~CRVT  523 (613)
T KOG1233|consen  505 RECKAQGVTHPVLSNCRVT  523 (613)
T ss_pred             HHHHhcCCCcccccceeEE
Confidence            9999999875544 48764

>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage

Probab=98.42  E-value=1.1e-07  Score=73.97  Aligned_cols=102  Identities=22%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             CCCCHHH-hhhHHH-HHHHHHHHcCCcc-----CCCccchhhhhhhchhhhhhHHHHhcccceeeeecccccCChHHHHH
Q psy16486          1 FSRDPED-VKNNED-KIYSIAKRYGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCI   73 (150)
Q Consensus         1 FEGs~~~-V~~~~~-~a~~I~k~~GGv~-----lG~~~G~~W~~~RF~~PYLRD~Lld~Gi~vDTfETAvtWs~v~~L~~   73 (150)
                      |+|+... +..+.. .+.+++..+|+..     -+......|..-++..||+++.+...|.+.+|++++|||++++.+++
T Consensus        66 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~  145 (248)
T PF02913_consen   66 FEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLR  145 (248)
T ss_dssp             CCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHH
Confidence            5677744 555566 7788888887754     12234678888888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCceEEEeecccchhhhhhh
Q psy16486         74 NVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKR  107 (150)
Q Consensus        74 ~Vk~Al~~al~~~G~~~~~V~CH~~~~~~~~~~~  107 (150)
                      .+++.    +.+.+. ...++.|+-.|++-+.=.
T Consensus       146 ~~~~~----~~~~~~-~~~~~gH~~~g~~h~~~~  174 (248)
T PF02913_consen  146 EIRAL----LREYGL-EVCHFGHAGDGNLHLYIL  174 (248)
T ss_dssp             HHHHH----HHHCTE-EEEEEEEEEECEEEEEEE
T ss_pred             hhhhh----hhhccc-cccceEEccCCeEEEEee
Confidence            98554    445555 367888888888766543

The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....

>TIGR00387 glcD glycolate oxidase, subunit GlcD

Probab=98.01  E-value=8.2e-06  Score=71.53  Aligned_cols=98  Identities=15%  Similarity=0.079  Sum_probs=75.1

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccC----C-CccchhhhhhhchhhhhhHHHHhcccceeeeecccccCChHHHHHHH
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINV   75 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~l----G-~~~G~~W~~~RF~~PYLRD~Lld~Gi~vDTfETAvtWs~v~~L~~~V   75 (150)
                      |+|+.+.|+.+..++.++++.+|+..+    + ....+.|..-++..||+++.. ...+   +.++||||++++.+++.+
T Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~~~~~  313 (413)
T TIGR00387       238 IDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEALRGI  313 (413)
T ss_pred             ecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHHHHHH
Confidence            578888899999999999999988533    1 235667888888899998743 2222   457999999999999998


Q ss_pred             HHHHHHHHHhcCCCceEEEeecccchhhhhhh
Q psy16486         76 KKRLTRECTVSNGLLEFRSETKKEGNLGFRKR  107 (150)
Q Consensus        76 k~Al~~al~~~G~~~~~V~CH~~~~~~~~~~~  107 (150)
                      ++.    +.+.|.. ..++.|.-.|+.-|+-.
T Consensus       314 ~~~----~~~~~~~-~~~~gH~g~g~lh~~~~  340 (413)
T TIGR00387       314 ADI----ARKYDFT-IANFGHAGDGNLHPTIL  340 (413)
T ss_pred             HHH----HHHcCCe-EEEEEEecCCccccccC
Confidence            554    4556764 67889999998888654

This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.

>PRK11230 glycolate oxidase subunit GlcD; Provisional

Probab=97.33  E-value=0.0004  Score=63.03  Aligned_cols=99  Identities=8%  Similarity=-0.018  Sum_probs=71.5

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccCCC-----ccchhhhhhhchhhhhhHHHHhcccceeeeecccccCChHHHHHHH
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGE-----SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINV   75 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~lG~-----~~G~~W~~~RF~~PYLRD~Lld~Gi~vDTfETAvtWs~v~~L~~~V   75 (150)
                      |+|+.+.|..+.+++.+++..+|+..+.-     .....|..-+...|+++..  ..+++  ..+++|||++++.+++.+
T Consensus       295 ~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~--~~dv~vP~~~l~~~~~~~  370 (499)
T PRK11230        295 LDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYY--CMDGTIPRRELPGVLEGI  370 (499)
T ss_pred             ecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCee--EEeecCChHHHHHHHHHH
Confidence            46888889899999999999999753321     2334676644556888763  33444  348899999999999998


Q ss_pred             HHHHHHHHHhcCCCceEEEeecccchhhhhhhh
Q psy16486         76 KKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQ  108 (150)
Q Consensus        76 k~Al~~al~~~G~~~~~V~CH~~~~~~~~~~~~  108 (150)
                      ++    .+...+.. ..++-|.-.||.-+.-+.
T Consensus       371 ~~----~~~~~~~~-~~~~gH~GdGn~H~~i~~  398 (499)
T PRK11230        371 AR----LSQQYGLR-VANVFHAGDGNMHPLILF  398 (499)
T ss_pred             HH----HHHHcCCe-EEEEEEeCCCcceeeecC
Confidence            65    44556774 556669999999887653

>PLN02805 D-lactate dehydrogenase [cytochrome]

Probab=96.89  E-value=0.0017  Score=60.07  Aligned_cols=100  Identities=14%  Similarity=-0.019  Sum_probs=68.8

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCc--cCCCcc---chhhhhhhchhh-hhhHHHHhcccceeeeecccccCChHHHHHH
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGI--PAGESN---GRRGYMLTYIIA-YIRDFACDYYFIGDSFETSVPWDKTVLLCIN   74 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv--~lG~~~---G~~W~~~RF~~P-YLRD~Lld~Gi~vDTfETAvtWs~v~~L~~~   74 (150)
                      |+|+...+..+...+.+|+.++|+.  .+...+   .+.|. .|-... .+.  .+.-+....+.++|||||+++.+++.
T Consensus       370 ~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~-~R~~~~~~~~--~~~~~~~~~~~DvaVP~s~L~e~i~~  446 (555)
T PLN02805        370 FIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWK-IRKEALWACF--AMEPKYEAMITDVCVPLSHLAELISR  446 (555)
T ss_pred             EecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-HHHHHHHHHh--hcCCCCceeEEEEEEEHHHHHHHHHH
Confidence            4688888888889999999999984  233333   44566 332222 111  01123334567899999999999988


Q ss_pred             HHHHHHHHHHhcCCCceEEEeecccchhhhhhhh
Q psy16486         75 VKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQ  108 (150)
Q Consensus        75 Vk~Al~~al~~~G~~~~~V~CH~~~~~~~~~~~~  108 (150)
                      +++.    +.+.|.. ..++-|.-.||..|.=+.
T Consensus       447 ~~~~----~~~~~~~-~~~~gHaGdGnlH~~i~~  475 (555)
T PLN02805        447 SKKE----LDASPLV-CTVIAHAGDGNFHTIILF  475 (555)
T ss_pred             HHHH----HHHcCCe-EEEEEEcCCCcEEEEecc
Confidence            8654    4567774 788899999999887654

>COG3286 Uncharacterized protein conserved in archaea [Function unknown]

Probab=88.28  E-value=1.2  Score=37.27  Aligned_cols=81  Identities=12%  Similarity=0.129  Sum_probs=56.6

Q ss_pred             CCCHHHhhhHHHHHHHHHHHcCCccCCCccc-----hhhhhhhchhh--hhhHHHHhccccee----eeecccccCChHH
Q psy16486          2 SRDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYMLTYIIA--YIRDFACDYYFIGD----SFETSVPWDKTVL   70 (150)
Q Consensus         2 EGs~~~V~~~~~~a~~I~k~~GGv~lG~~~G-----~~W~~~RF~~P--YLRD~Lld~Gi~vD----TfETAvtWs~v~~   70 (150)
                      .|..+.++...+.+.++.+..-+..-+...|     .--....=+.|  -|+|+|--+||=++    -++|++||+-+..
T Consensus        44 ~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~ev~E  123 (204)
T COG3286          44 FGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPWSEVVE  123 (204)
T ss_pred             ecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCHHHHHH
Confidence            4778888888888888887766643322211     11112222223  89999999998765    4899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy16486         71 LCINVKKRLTRE   82 (150)
Q Consensus        71 L~~~Vk~Al~~a   82 (150)
                      +...+-.+.+.+
T Consensus       124 ~vreLse~~~E~  135 (204)
T COG3286         124 LVRELSEVYREA  135 (204)
T ss_pred             HHHHHHHHHHHH
Confidence            999887766665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
4bca_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		2e-25
4bby_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		2e-25
4bc7_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		2e-25

>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 63/83 (75%)
Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFE
Sbjct: 470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFE 529
Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+ REC
Sbjct: 530 TSAPWDRVVDLCRNVKERIRREC 552

>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 63/83 (75%)
Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFE
Sbjct: 470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFE 529
Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+ REC
Sbjct: 530 TSAPWDRVVDLCRNVKERIRREC 552

>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 63/83 (75%)
Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F  D E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFE
Sbjct: 470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFE 529
Query: 61  TSVPWDKTVLLCINVKKRLTREC 83
           TS PWD+ V LC NVK+R+ REC
Sbjct: 530 TSAPWDRVVDLCRNVKERIRREC 552

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	1e-17
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	3e-04

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584

 Score = 77.5 bits (191), Expect = 1e-17
 Identities = 18/87 (20%), Positives = 32/87 (36%)

Query: 1   FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
           F    + V  +   ++ I  +      G + G+      Y + YIRDF  D+    D  E
Sbjct: 399 FEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAE 458

Query: 61  TSVPWDKTVLLCINVKKRLTRECTVSN 87
           T+V +     L  + K+   +      
Sbjct: 459 TTVSYANLQTLWKDAKQTFVKHFKDQG 485

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 28/46 (60%)

Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
           RK + E++K+ +E +   K  E+E ++K ++   E  +R+ E VE+
Sbjct: 88  RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 92  FRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
           FRSE  K G          K +   EKE E ++ +E   + + + + + +  + + 
Sbjct: 299 FRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDG 354

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	99.37
4bby_A	658	Alkyldihydroxyacetonephosphate synthase, peroxiso;	99.17
1e8g_A	560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	97.62
1f0x_A	571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	97.25
3pm9_A	476	Putative oxidoreductase; putative D-2-hydroxygluta	97.12
1wvf_A	520	4-cresol dehydrogenase [hydroxylating] flavoprote	94.91
2exr_A	524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	94.66

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*

Probab=99.37  E-value=5.3e-13  Score=120.41  Aligned_cols=97  Identities=19%  Similarity=0.238  Sum_probs=90.8

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccCCCccchhhhhhhchhhhhhHHHHhcccceeeeecccccCChHHHHHHHHHHHH
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT   80 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~lG~~~G~~W~~~RF~~PYLRD~Lld~Gi~vDTfETAvtWs~v~~L~~~Vk~Al~   80 (150)
                      |+|+...|+.+..++.+||+.+||+.++...+..|+..|+..||||+.++++|+++++++||||||+++.++..+++.+.
T Consensus       399 ~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~l~  478 (584)
T 2uuu_A          399 FEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFV  478 (584)
T ss_dssp             EEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHHHH
Confidence            46888889999999999999999988888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCceEEEeecc
Q psy16486         81 RECTVSNGLLEFRSETKK   98 (150)
Q Consensus        81 ~al~~~G~~~~~V~CH~~   98 (150)
                      ..+.++|.+ .+++||.-
T Consensus       479 ~~~~~~g~~-~~~~~h~g  495 (584)
T 2uuu_A          479 KHFKDQGIP-AWICAHIS  495 (584)
T ss_dssp             HHHHTTTCC-EEEEEEEE
T ss_pred             hHHHhcCCe-eEEEEEEE
Confidence            999999996 78899984

>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*

Probab=99.17  E-value=3e-11  Score=109.72  Aligned_cols=97  Identities=49%  Similarity=0.962  Sum_probs=88.9

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccCCCccchhhhhhhchhhhhhHHHHhcccceeeeecccccCChHHHHHHHHHHHH
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT   80 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~lG~~~G~~W~~~RF~~PYLRD~Lld~Gi~vDTfETAvtWs~v~~L~~~Vk~Al~   80 (150)
                      |+|+...|..+.+.+.+++..+||+..+..+++.|+..||..||+|+.+++++++.++++|++|||+++.++..|.+++.
T Consensus       470 ~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l~  549 (658)
T 4bby_A          470 FEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIR  549 (658)
T ss_dssp             EEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCc-eEEEeec
Q psy16486         81 RECTVSNGLL-EFRSETK   97 (150)
Q Consensus        81 ~al~~~G~~~-~~V~CH~   97 (150)
                      ..+...|... ++.+||.
T Consensus       550 ~~~~~~g~~~~~~~~~~~  567 (658)
T 4bby_A          550 RECKEKGVQFPPLSTCRV  567 (658)
T ss_dssp             HHHHHTTCSSCCEEEEEE
T ss_pred             HHHHhcCccccccceEEE
Confidence            9999988742 4666643

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*

Probab=97.62  E-value=3.8e-05  Score=68.43  Aligned_cols=100  Identities=8%  Similarity=-0.119  Sum_probs=74.1

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccC--CCcc--chhhhhhhchh----hhhhHH---HHhcccceeeeeccccc--CC
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW--DK   67 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~l--G~~~--G~~W~~~RF~~----PYLRD~---Lld~Gi~vDTfETAvtW--s~   67 (150)
                      |+|+...|+.+...+.+||+.+||..+  ...+  ...|.. |+..    |+++..   +|..|=...++.+++||  ++
T Consensus       357 ~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~~~~  435 (560)
T 1e8g_A          357 LYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGED  435 (560)
T ss_dssp             EESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSHHH
T ss_pred             EeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCCHHH
Confidence            468888899999999999999998533  3333  334554 7765    887754   23332234568999999  99


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCceEEEeecccchhhhhh
Q psy16486         68 TVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRK  106 (150)
Q Consensus        68 v~~L~~~Vk~Al~~al~~~G~~~~~V~CH~~~~~~~~~~  106 (150)
                      ++.+++.+++    .+.++|.+ .++++|.-.||..|--
T Consensus       436 l~~~~~~~~~----~~~~~g~~-~~~~gH~gdGnlH~~i  469 (560)
T 1e8g_A          436 AMMQYAVTKK----RCQEAGLD-FIGTFTVGMREMHHIV  469 (560)
T ss_dssp             HHHHHHHHHH----HHHHHTCC-CCEEEEECSSCEEEEE
T ss_pred             HHHHHHHHHH----HHHHcCCc-eEEEEEecCCeEEEEe
Confidence            9999988854    45677886 7899999999987754

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1

Probab=97.25  E-value=4.4e-05  Score=69.03  Aligned_cols=87  Identities=7%  Similarity=-0.044  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHcCCccC--CCccchhhhhhhchhh----hhhHHHHh-cccceeeeecccccCChHHHHHHHHHHHHHHHH
Q psy16486         12 EDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVLLCINVKKRLTRECT   84 (150)
Q Consensus        12 ~~~a~~I~k~~GGv~l--G~~~G~~W~~~RF~~P----YLRD~Lld-~Gi~vDTfETAvtWs~v~~L~~~Vk~Al~~al~   84 (150)
                      .+.+.+|+..++|...  +...+++|...||++|    |+|+.+.+ .| .+.+++|||||++++.+ +.+.+.+.+   
T Consensus       405 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~~-~~~~~~l~~---  479 (571)
T 1f0x_A          405 KSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEWY-EHLPPEIDS---  479 (571)
T ss_dssp             HHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCCS-CCCCHHHHT---
T ss_pred             HHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHHH-HHHHHHHHh---
Confidence            5666778888866444  4567888888999997    88988775 33 36899999999999999 887665543   


Q ss_pred             hcCCCceEEEeecccchhhhh
Q psy16486         85 VSNGLLEFRSETKKEGNLGFR  105 (150)
Q Consensus        85 ~~G~~~~~V~CH~~~~~~~~~  105 (150)
                       .+.. ..++.|...|+.-+.
T Consensus       480 -~~~~-~~~~GH~g~g~~H~~  498 (571)
T 1f0x_A          480 -QLVH-KLYYGHFMCYVFHQD  498 (571)
T ss_dssp             -TEEE-EEEEEETTTTEEEEE
T ss_pred             -hCcc-ceeEEEEcCCceEEe
Confidence             4442 567788888877654

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}

Probab=97.12  E-value=0.00034  Score=61.50  Aligned_cols=100  Identities=12%  Similarity=0.004  Sum_probs=68.4

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccC---CC---ccchhhhhhhchhhhhhHHHHhcccceeeeecccccCChHHHHHH
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPA---GE---SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCIN   74 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~l---G~---~~G~~W~~~RF~~PYLRD~Lld~Gi~vDTfETAvtWs~v~~L~~~   74 (150)
                      |+|+..+++.+..++.+++..+|++.-   ..   ....-|. .|-.++   ..+...|. ..+.++|||||+++.+++.
T Consensus       295 ~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~---~~~~~~g~-~~~~Dv~vP~~~l~~~~~~  369 (476)
T 3pm9_A          295 LSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEIS---PAQKPEGG-SIKHDISVPVAAVPQFIEQ  369 (476)
T ss_dssp             EEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHH---HHTGGGCC-EECCEEECCGGGHHHHHHH
T ss_pred             EccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHH---HHHhhcCC-ceeEEEEeeHHHHHHHHHH
Confidence            356666688888899999999887421   11   2234564 444333   12223454 6889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCceEEEeecccchhhhhhhh
Q psy16486         75 VKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQ  108 (150)
Q Consensus        75 Vk~Al~~al~~~G~~~~~V~CH~~~~~~~~~~~~  108 (150)
                      +++.+.+.+.  |.+ .++++|.-.||+-|.-..
T Consensus       370 ~~~~~~~~~~--~~~-~~~~gH~gdGnlH~~i~~  400 (476)
T 3pm9_A          370 ANAAVVALIP--GAR-PVPFGHLGDGNIHYNVSQ  400 (476)
T ss_dssp             HHHHHHHHST--TCE-EEEEEEGGGTEEEEEEEC
T ss_pred             HHHHHHHhcC--CCe-EEEEEEeCCCceEEEEec
Confidence            8766554421  564 788999999999887554

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*

Probab=94.91  E-value=0.029  Score=49.23  Aligned_cols=95  Identities=7%  Similarity=-0.206  Sum_probs=60.6

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccCCCccchhhhhhhchhhhhhHHHHh----------------cccceeeeecccc
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD----------------YYFIGDSFETSVP   64 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~lG~~~G~~W~~~RF~~PYLRD~Lld----------------~Gi~vDTfETAvt   64 (150)
                      |+|+..+|+.+.+.+.++++.+|+..+.   ...|. .+-...++|..++.                -+.+..+.-..++
T Consensus       326 ~~g~~~~v~~~~~~i~~~~~~~~~~~~~---~~~~~-~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vp~~  401 (520)
T 1wvf_A          326 LYGTQEQVDVNWKIVTDVFKKLGKGRIV---TQEEA-GDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEAR  401 (520)
T ss_dssp             EEESHHHHHHHHHHHHHHHHHHTCCEEE---EHHHH-TTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESC
T ss_pred             EeCCHHHHHHHHHHHHHHHHHcCCeEEE---ecccc-hhhhHHHHHHHhhccCchhhhhccccccCCCceEEeccccCCC
Confidence            4678888999999999999999986442   22232 23344555654441                1112222223445


Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCCCceEEEeecccchhhh
Q psy16486         65 WDKTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGF  104 (150)
Q Consensus        65 Ws~v~~L~~~Vk~Al~~al~~~G~~~~~V~CH~~~~~~~~  104 (150)
                      |++++.+++.+    ++.+.++|.+ ..+++|.-.||.-|
T Consensus       402 ~~~l~~~~~~~----~~~~~~~~~~-~~~~gh~gdGnlH~  436 (520)
T 1wvf_A          402 GSECKKQAAMA----KRVLHKYGLD-YVAEFIVAPRDMHH  436 (520)
T ss_dssp             HHHHHHHHHHH----HHHHHHTTCC-CCEEEEECSSEEEE
T ss_pred             HHHHHHHHHHH----HHHHHHcCCC-eeEeecccCcceee
Confidence            57888777666    4455677875 77899999998766

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*

Probab=94.66  E-value=0.0019  Score=57.21  Aligned_cols=81  Identities=5%  Similarity=-0.178  Sum_probs=56.2

Q ss_pred             CC-CHHHhhhHHHHHHHHHHHcCCccCCCcc----------chhhhhhhchhhhhhHHHHhcccceeeeecccccCChHH
Q psy16486          2 SR-DPEDVKNNEDKIYSIAKRYGGIPAGESN----------GRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL   70 (150)
Q Consensus         2 EG-s~~~V~~~~~~a~~I~k~~GGv~lG~~~----------G~~W~~~RF~~PYLRD~Lld~Gi~vDTfETAvtWs~v~~   70 (150)
                      +| +.+.|+.+.+.+.++++.+||..++...          ...|...++..|.+..     .    +++|+||||+++.
T Consensus       324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~  394 (524)
T 2exr_A          324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD  394 (524)
T ss_dssp             TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence            67 6788999999999999999998655332          2337666666655542     1    3699999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCceEEEe
Q psy16486         71 LCINVKKRLTRECTVSNGLLEFRSE   95 (150)
Q Consensus        71 L~~~Vk~Al~~al~~~G~~~~~V~C   95 (150)
                      +++.|.+.    +...|...++++|
T Consensus       395 ~~~~v~~~----~~gdgn~h~~i~~  415 (524)
T 2exr_A          395 FNRTVFKE----LVKNGVNGPMLVY  415 (524)
T ss_dssp             HHHHCCCC----CTTTCCSSCEEEE
T ss_pred             HHHHHHHH----HhCCCCcceEEEE
Confidence            99888653    2333432245555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1wvfa1	279	Flavoprotein subunit of p-cresol methylhydroxylase	98.03
d1e8ga1	287	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	97.1

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=98.03  E-value=1.4e-06  Score=68.17  Aligned_cols=100  Identities=9%  Similarity=-0.108  Sum_probs=72.9

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccC---CCcc-chhhh---hhhchhhhhhHHHHhc-----ccceeeeecccccCCh
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPA---GESN-GRRGY---MLTYIIAYIRDFACDY-----YFIGDSFETSVPWDKT   68 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~l---G~~~-G~~W~---~~RF~~PYLRD~Lld~-----Gi~vDTfETAvtWs~v   68 (150)
                      |.|++..|+.+.+++.+|++++||..+   +... ...|.   ...+.+|+++.+.+.+     |.+..+--++++||++
T Consensus        85 l~G~~~~v~~~~~~i~~i~~~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~s~l  164 (279)
T d1wvfa1          85 LYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSEC  164 (279)
T ss_dssp             EEESHHHHHHHHHHHHHHHHHHTCCEEEEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHH
T ss_pred             eecCHHHHHHHHHHHHHHHHHCCCceEEeCCCHHHHHHHHHHHHhhhhhhhhhhhhHhhcCCCCCcceeeeeecCCHHHH
Confidence            358899999999999999999999654   1111 22232   2235667888776654     4555566678899999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEeecccchhhhh
Q psy16486         69 VLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFR  105 (150)
Q Consensus        69 ~~L~~~Vk~Al~~al~~~G~~~~~V~CH~~~~~~~~~  105 (150)
                      +.+++.+    ++.+.++|.+ .++++|.-.||.-|.
T Consensus       165 ~~~~~~~----~~~~~~~g~~-~~~~~H~gdgnlh~~  196 (279)
T d1wvfa1         165 KKQAAMA----KRVLHKYGLD-YVAEFIVAPRDMHHV  196 (279)
T ss_dssp             HHHHHHH----HHHHHHTTCC-CCEEEEECSSEEEEE
T ss_pred             HHHHHHH----HHHHHHhCCC-eEEEEecCCceEEEE
Confidence            9988776    5566778986 889999999988765

>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

Probab=97.10  E-value=0.00036  Score=53.77  Aligned_cols=99  Identities=5%  Similarity=-0.240  Sum_probs=69.4

Q ss_pred             CCCCHHHhhhHHHHHHHHHHHcCCccC--C---Cccchhhhhhhch------hhhhhHHHHhcccceeeeecccccCC-h
Q psy16486          1 FSRDPEDVKNNEDKIYSIAKRYGGIPA--G---ESNGRRGYMLTYI------IAYIRDFACDYYFIGDSFETSVPWDK-T   68 (150)
Q Consensus         1 FEGs~~~V~~~~~~a~~I~k~~GGv~l--G---~~~G~~W~~~RF~------~PYLRD~Lld~Gi~vDTfETAvtWs~-v   68 (150)
                      |+|++..|+.+.+.+.+|++++||..+  .   .....-|...++.      .|+..+...+.|..+.+..++++|++ +
T Consensus        84 l~G~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l  163 (287)
T d1e8ga1          84 LYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDA  163 (287)
T ss_dssp             EESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHHHHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHHHHHhHhhhhhhhhhHHhhcCCCCeeeeeceeccChHHH
Confidence            468999999999999999999999643  1   1222234433332      23444555566777888889998864 5


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEeecccchhhh
Q psy16486         69 VLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGF  104 (150)
Q Consensus        69 ~~L~~~Vk~Al~~al~~~G~~~~~V~CH~~~~~~~~  104 (150)
                      +.+++    .++..+.++|.. .+++.|.-.||.-+
T Consensus       164 ~~~~~----~~~~~~~~~g~~-~~~~~H~gdg~~h~  194 (287)
T d1e8ga1         164 MMQYA----VTKKRCQEAGLD-FIGTFTVGMREMHH  194 (287)
T ss_dssp             HHHHH----HHHHHHHHHTCC-CCEEEEECSSCEEE
T ss_pred             HHHHH----HHHHHHHHcCCC-eEEEEEEcCCceeE
Confidence            55554    457777888986 88999998887753