Psyllid ID: psy16588

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccccccHHHHccHHHHHHcccccccccccccccccccccccccccccHHHHHcHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccccHccHHHHHHcHccEcccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mrsltsqlsvddleaeeegiadsvldtntiataarpgtslktaavtapaltsrprtesgrpvsgvvrpgtlasrggtleqslktprtaksarpltSQAARTIRLGTasmlsqpdgpfiqVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGvnhfyndqPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSidsshglsqnNLAVLEAREGHIERASTYLQAAaasspylyetHYNQAVISNLAGDLQESYNIVKKsldlhpghsysWDILRKLEQYFSYL
Flexible Loop (DISEMBL)
mrsltsqlsvddlEAEEEgiadsvldtntiataarpgtslktaavtapaltsrprtesgrpvsgvvrpgtlasrggtleqslktprtaksarpltsqAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLdlhpghsyswdILRKLEQYFSYL
Low Complexity Region (SEG)
MRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL
Disordered region (IsUnstruct)
******************************************************************************************************************GPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS**
Disordered Region (DISOPRED)
*RSLTSQLSVDDLEAEEEGIADSVLDTNTIA*************************ESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL
Disordered Region (DISEMBL)
************LEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAP**************SGVVRPGTLASR*********************SQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL
Disordered Region (DISPRO)
*RSLTSQLSVDDLEAEEEGIADSVLDTNTIATA*************************GRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS*L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTAPALTSRPRTESGRPVSGVVRPGTLASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q8TAM2	541	Tetratricopeptide repeat	yes	N/A	0.636	0.401	0.577	5e-71
Q8VD72	515	Tetratricopeptide repeat	yes	N/A	0.636	0.421	0.568	1e-69
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	N/A	0.428	0.156	0.236	2e-06
P56558	1036	UDP-N-acetylglucosamine--	no	N/A	0.598	0.196	0.240	3e-06
Q8CGY8	1046	UDP-N-acetylglucosamine--	no	N/A	0.598	0.195	0.240	3e-06
P81436	1046	UDP-N-acetylglucosamine--	no	N/A	0.598	0.195	0.240	3e-06
Q27HV0	1046	UDP-N-acetylglucosamine--	no	N/A	0.598	0.195	0.240	3e-06
O15294	1046	UDP-N-acetylglucosamine--	no	N/A	0.598	0.195	0.240	3e-06
Q96301	914	Probable UDP-N-acetylgluc	yes	N/A	0.428	0.159	0.229	3e-06
O82039	932	Probable UDP-N-acetylgluc	N/A	N/A	0.428	0.156	0.222	3e-06

>sp|Q8TAM2|TTC8_HUMAN Tetratricopeptide repeat protein 8 OS=Homo sapiens GN=TTC8 PE=1 SV=2

 Score =  268 bits (684), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/218 (57%), Positives = 165/218 (75%), Gaps = 1/218 (0%)

Query: 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
           +A+I+E +NNM  + +YYK +LK+D T +EAIACIG NHFY+DQPE+AL FYRRLLQMG+
Sbjct: 324 IARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGI 383

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVAIGISDTRLAI 243
           YN +LFNNL LCCFY+QQYDM +T FERALSLA N E AADVWYN+ HVA+GI DT LA 
Sbjct: 384 YNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHVAVGIGDTNLAH 443

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
           QC  LAL  +++H  + NNLAVLE R+GH+E+A   LQ A++ +P++YE H+N A IS+ 
Sbjct: 444 QCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATISDK 503

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
            GDLQ SY   +KS    P H  +  ++++L Q+F+ L
Sbjct: 504 IGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML 541

The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.
Homo sapiens (taxid: 9606)

>sp|Q8VD72|TTC8_MOUSE Tetratricopeptide repeat protein 8 OS=Mus musculus GN=Ttc8 PE=2 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 164/218 (75%), Gaps = 1/218 (0%)

Query: 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
           +A+I+E +NN   + +YYK +LK+D T +EAIACIG NHFY+DQPEVAL FYRRLLQMG+
Sbjct: 298 IARIYEEMNNSSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEVALRFYRRLLQMGV 357

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVAIGISDTRLAI 243
           YN +LFNNL LCCFY+QQYDM +T FERALSLA N E AADVWYN+ H+A+GI DT LA 
Sbjct: 358 YNCQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHIAVGIGDTNLAH 417

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
           QC  LAL  ++ H  + NNLAVLE R+GH+E+A   LQ A++ +P++YE H+N A +S+ 
Sbjct: 418 QCFRLALVHNNHHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATVSDK 477

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
            GDLQ SY   +KS    P H  +  ++++L+Q+F+ L
Sbjct: 478 IGDLQRSYVAAQKSEVAFPEHVDTQHLIKQLKQHFAML 515

The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.

Mus musculus (taxid: 10090)

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 175 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 234
           +Y++ L    + A+   NL +      ++DM +  +E  L+   N + A+   N+  +  
Sbjct: 288 YYKKALCYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYK 345

Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
              +   A++C  LALSI  +   S NNL V+   +G ++ A++ ++ A  ++P   E +
Sbjct: 346 DRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAY 405

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
            N  V+   AG++  +    ++ L + P
Sbjct: 406 NNLGVLYRDAGNISLAIEAYEQCLKIDP 433

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
           P   V+  NL  +F     + +++ +++  +  D   ++A   +G         + A+  
Sbjct: 178 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 237

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAI 234
           Y R L +   +A +  NLA C +Y Q   D+ +  + RA+ L    +  D + N+++   
Sbjct: 238 YLRALSLSPNHAVVHGNLA-CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK 294

Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
                  A  C + AL +  +H  S NNLA ++  +G+IE A    + A    P     H
Sbjct: 295 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 354

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
            N A +    G LQE+    K+++ + P
Sbjct: 355 SNLASVLQQQGKLQEALMHYKEAIRISP 382

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
           P   V+  NL  +F     + +++ +++  +  D   ++A   +G         + A+  
Sbjct: 188 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 247

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAI 234
           Y R L +   +A +  NLA C +Y Q   D+ +  + RA+ L    +  D + N+++   
Sbjct: 248 YLRALSLSPNHAVVHGNLA-CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK 304

Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
                  A  C + AL +  +H  S NNLA ++  +G+IE A    + A    P     H
Sbjct: 305 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 364

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
            N A +    G LQE+    K+++ + P
Sbjct: 365 SNLASVLQQQGKLQEALMHYKEAIRISP 392

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
           P   V+  NL  +F     + +++ +++  +  D   ++A   +G         + A+  
Sbjct: 188 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 247

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAI 234
           Y R L +   +A +  NLA C +Y Q   D+ +  + RA+ L    +  D + N+++   
Sbjct: 248 YLRALSLSPNHAVVHGNLA-CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK 304

Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
                  A  C + AL +  +H  S NNLA ++  +G+IE A    + A    P     H
Sbjct: 305 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 364

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
            N A +    G LQE+    K+++ + P
Sbjct: 365 SNLASVLQQQGKLQEALMHYKEAIRISP 392

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
           P   V+  NL  +F     + +++ +++  +  D   ++A   +G         + A+  
Sbjct: 188 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 247

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAI 234
           Y R L +   +A +  NLA C +Y Q   D+ +  + RA+ L    +  D + N+++   
Sbjct: 248 YLRALSLSPNHAVVHGNLA-CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK 304

Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
                  A  C + AL +  +H  S NNLA ++  +G+IE A    + A    P     H
Sbjct: 305 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 364

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
            N A +    G LQE+    K+++ + P
Sbjct: 365 SNLASVLQQQGKLQEALMHYKEAIRISP 392

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
           P   V+  NL  +F     + +++ +++  +  D   ++A   +G         + A+  
Sbjct: 188 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 247

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAI 234
           Y R L +   +A +  NLA C +Y Q   D+ +  + RA+ L    +  D + N+++   
Sbjct: 248 YLRALSLSPNHAVVHGNLA-CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK 304

Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
                  A  C + AL +  +H  S NNLA ++  +G+IE A    + A    P     H
Sbjct: 305 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 364

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
            N A +    G LQE+    K+++ + P
Sbjct: 365 SNLASVLQQQGKLQEALMHYKEAIRISP 392

Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 175 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 234
           +Y++ L    + A+   NL +      ++DM +  +E  L+   N + A+   N+  +  
Sbjct: 283 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVLYK 340

Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
              +   A++C  +ALSI  +   S NNL V+   +G ++ A++ ++ A  ++P   E  
Sbjct: 341 DRDNLDKAVECYQMALSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAF 400

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
            N  V+   AG++  + +  ++ L + P
Sbjct: 401 NNLGVLYRDAGNITMAIDAYEECLKIDP 428

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 175 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 234
           +Y++ L    + A+   NL +      ++DM +  +E  L+   N + A+   N+  +  
Sbjct: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYK 345

Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
              +   A++C  +AL+I  +   S NNL V+   +G ++ A++ ++ A  ++P   E +
Sbjct: 346 DRDNLDKAVECYQMALTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAY 405

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
            N  V+   AG++  +    ++ L + P
Sbjct: 406 NNLGVLYRDAGNISLAIEAYEQCLKIDP 433

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Petunia hybrida (taxid: 4102)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
432937169	475	PREDICTED: tetratricopeptide repeat prot	0.985	0.707	0.400	3e-75
328699792	503	PREDICTED: tetratricopeptide repeat prot	0.633	0.429	0.625	3e-75
348531224	475	PREDICTED: tetratricopeptide repeat prot	0.997	0.715	0.390	7e-75
307197616	496	Tetratricopeptide repeat protein 8 [Harp	0.636	0.437	0.603	3e-74
383855556	496	PREDICTED: tetratricopeptide repeat prot	0.636	0.437	0.580	1e-71
350417804	496	PREDICTED: tetratricopeptide repeat prot	0.630	0.433	0.576	2e-71
340729289	764	PREDICTED: tetratricopeptide repeat prot	0.636	0.284	0.571	4e-71
66548094	496	PREDICTED: tetratricopeptide repeat prot	0.636	0.437	0.571	9e-71
307177659	336	Tetratricopeptide repeat protein 8 [Camp	0.636	0.645	0.580	5e-70
197097962	505	tetratricopeptide repeat protein 8 [Pong	0.636	0.429	0.582	1e-69

>gi|432937169|ref|XP_004082370.1| PREDICTED: tetratricopeptide repeat protein 8-like isoform 2 [Oryzias latipes]

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/432 (40%), Positives = 235/432 (54%), Gaps = 96/432 (22%)

Query: 3   SLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVT-----APALTS----- 52
           SLT  + +D++E ++EGIA+ +LD N+IA  ARPGTSL+    +      PA+       
Sbjct: 47  SLTEMVYIDEIEVDQEGIAEMMLDENSIAQVARPGTSLRLPGTSQGGGPTPAVRPMTQSG 106

Query: 53  -------RPRTESGRP-----------VSGVVRPGTLAS----RGGT--LEQSLKTPRTA 88
                  RP T+SGRP            +   RP T +S    R GT   E         
Sbjct: 107 RPITGFVRPSTQSGRPGTMEQAIKTPRTASTARPVTSSSGRFVRLGTTLFEYIFHHENDV 166

Query: 89  KSARPLTSQAAR---------TIRLGT-------------------------------AS 108
           K+A  L +QA            ++LG                                A 
Sbjct: 167 KNALDLAAQATEHAQFKDWWWKVQLGKCYYRLGLYREAEKQFRSALNQQEVVDTYLYLAK 226

Query: 109 MLSQPDGPFIQVSRLNL------------------AKIFEGLNNMPMSVKYYKLILKRDA 150
           +  + D P   V+ LNL                  A+I E LNN+  + +YYK +LK+D 
Sbjct: 227 VYQRMDQP---VTALNLFKQGLDHFPGEVTLLTGVARIHEELNNISSATEYYKDVLKQDN 283

Query: 151 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCF 210
           T +EAIACIG NHFY DQPE+AL FYRRLLQMG+YN +L+NNL LCCFY+QQYDM ++ F
Sbjct: 284 THVEAIACIGSNHFYTDQPEIALRFYRRLLQMGVYNCQLYNNLGLCCFYAQQYDMALSSF 343

Query: 211 ERALSLAL-NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
           ERAL L   +E  A+VWYNI HVA+GI D  LA QC  LAL++++ H  + NNLAVLE R
Sbjct: 344 ERALGLVCSDEEQAEVWYNIGHVAVGIGDLTLAYQCFKLALALNNDHAEAYNNLAVLELR 403

Query: 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWD 329
           +GHIE+A  +LQ AA+ +P++YE H+N +++S   GDLQ SY   +KS D  P H  +  
Sbjct: 404 KGHIEQAKAFLQTAASLAPHMYEPHFNFSILSEKIGDLQSSYTAAQKSEDAFPEHVDTQK 463

Query: 330 ILRKLEQYFSYL 341
           +L++L Q+F+ L
Sbjct: 464 LLKQLRQHFAVL 475

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328699792|ref|XP_001944378.2| PREDICTED: tetratricopeptide repeat protein 8-like [Acyrthosiphon pisum]

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 137/219 (62%), Positives = 174/219 (79%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           + +A+IFEGLNN+PMSVKYY+ IL+ DAT ME+IACIG++HFY+DQPEVAL +YRRLLQM
Sbjct: 285 IEMARIFEGLNNIPMSVKYYRDILELDATDMESIACIGLHHFYSDQPEVALRYYRRLLQM 344

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
           GLYNAELFNNL LC FY+QQ+D+V  CFE AL LAL++NAADVWYNISHVAIG  D  +A
Sbjct: 345 GLYNAELFNNLGLCSFYAQQFDVVTACFENALRLALDDNAADVWYNISHVAIGFGDLDIA 404

Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
              LHL LS++SSHG + NNLAVL  R+ ++ RA + L +A A+  +LYE HYN+A+++ 
Sbjct: 405 EHSLHLTLSLNSSHGAALNNLAVLLWRKNNVSRAESLLNSAIAAEDHLYEPHYNRALLAQ 464

Query: 303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
             GD Q SY +VKKSL ++P H  S DIL +L++YFS L
Sbjct: 465 EEGDHQTSYGMVKKSLSIYPNHYNSRDILNELKKYFSSL 503

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348531224|ref|XP_003453110.1| PREDICTED: tetratricopeptide repeat protein 8-like isoform 2 [Oreochromis niloticus]

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 168/430 (39%), Positives = 233/430 (54%), Gaps = 90/430 (20%)

Query: 2   RSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVT-----APALTS---- 52
           R+LT  + +D++E ++EGIA+ +LD ++IA  ARPGTSL+           PA+      
Sbjct: 46  RALTEMVYIDEIEVDQEGIAEMMLDESSIAQVARPGTSLRLPGTCHGGGPTPAVRPMTQS 105

Query: 53  --------RPRTESGRP-----------VSGVVRPGTLAS----RGGT--LEQSLKTPRT 87
                   RP T+SGRP            +   RP T +S    R GT   E        
Sbjct: 106 GRPITGFVRPSTQSGRPGTMEQAIKTPRTASTARPVTASSGRFIRLGTTLFEYIFHHEND 165

Query: 88  AKSARPLTSQAAR---------TIRLGT-------------------------------A 107
            K+A  L +QA            ++LG                                A
Sbjct: 166 VKNALDLAAQATEHAQFKDWWWKVQLGKCYYRLGLYREAEKQFRSALNHQEMVDTYLYLA 225

Query: 108 SMLSQPDGPFIQVSRLN---------------LAKIFEGLNNMPMSVKYYKLILKRDATC 152
            +  + D P   +S                  +A+I E +NN+  + +YYK +LK+D T 
Sbjct: 226 KVYQRMDQPITALSLFKQGLDHFPGEVTLLTGIARIHEEMNNISSATEYYKDVLKQDNTH 285

Query: 153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER 212
           +EAIACIG NHFY DQPE+AL FYRRLLQMG+YN +L+NNL LCCFY+QQYDM ++ FER
Sbjct: 286 VEAIACIGSNHFYTDQPEIALRFYRRLLQMGVYNCQLYNNLGLCCFYAQQYDMTLSSFER 345

Query: 213 ALSLALN-ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG 271
           AL+L  N E  ADVWYNI HVA+GI D  LA QC  L L+ ++ H  + NNLAVLE R+G
Sbjct: 346 ALALVANDEEQADVWYNIGHVAVGIGDLTLAYQCFKLTLAFNNDHAEAYNNLAVLELRKG 405

Query: 272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
           HIE++  +LQ AA+ +P++YE H+N +++S   GDLQ SY+  +KS D  P H  +  +L
Sbjct: 406 HIEQSKAFLQTAASLAPHMYEPHFNLSILSEKLGDLQSSYSAAQKSEDAFPEHVDTQQLL 465

Query: 332 RKLEQYFSYL 341
           ++L Q+F+ L
Sbjct: 466 KQLRQHFAVL 475

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307197616|gb|EFN78804.1| Tetratricopeptide repeat protein 8 [Harpegnathos saltator]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/217 (60%), Positives = 169/217 (77%)

Query: 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
           + +IFEGLNNM MS+KYYK+I + DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG+
Sbjct: 280 MGRIFEGLNNMSMSMKYYKIIAQEDASHTEAIASIGMHHFYNDQPELALRYYRRLLQMGV 339

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
           +NAELFNNL LCCFY+QQYD  ++CFERALSLA +EN ADVWYNISH+AI + D  +A +
Sbjct: 340 HNAELFNNLGLCCFYAQQYDHTISCFERALSLATDENVADVWYNISHIAITLGDLIMAEE 399

Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
           CL LA++ D+ H L+ NNL V+E R G+I  A TY  AAA  + Y+YE H+N A ++   
Sbjct: 400 CLRLAIAADNRHALAYNNLGVIEVRNGNITAARTYFHAAANIAGYVYEAHFNSAHLAYEV 459

Query: 305 GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
           GDLQ SYN V+KSL  +PGH  S  +LRKL++YFS++
Sbjct: 460 GDLQTSYNAVQKSLSTYPGHYDSKILLRKLQRYFSHI 496

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855556|ref|XP_003703276.1| PREDICTED: tetratricopeptide repeat protein 8-like [Megachile rotundata]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/217 (58%), Positives = 166/217 (76%)

Query: 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
           + +IF+GLNNM MS+KYYK+I++ DA+  EAIA IG++HFY+DQPE+AL +YRRLLQMG+
Sbjct: 280 MGRIFDGLNNMSMSLKYYKIIVQEDASHTEAIASIGMHHFYSDQPELALRYYRRLLQMGV 339

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
           YN ELFNNL LCCFY+QQYD VV+CFERALSL+ +EN ADVWYNISH+A+ I D  +A +
Sbjct: 340 YNTELFNNLGLCCFYAQQYDHVVSCFERALSLSTDENIADVWYNISHIALSIGDMVMAEE 399

Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
           CL LA+  D+ H L+ NNL V++ R G+I  A TY  AAA  + ++YE H+N A ++   
Sbjct: 400 CLKLAIVCDNRHALAYNNLGVIQIRNGNITAAKTYFHAAANIANFIYEPHFNSAYLAYEV 459

Query: 305 GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
           GDLQ SY  ++KSL  +PGH  S  +  KLE+YFSY+
Sbjct: 460 GDLQTSYIAIQKSLSAYPGHCDSKTLFNKLERYFSYI 496

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417804|ref|XP_003491603.1| PREDICTED: tetratricopeptide repeat protein 8-like [Bombus impatiens]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/215 (57%), Positives = 165/215 (76%)

Query: 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
           + +IF+GLNNM MS+KYYKLI + DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG+
Sbjct: 280 MGRIFDGLNNMSMSLKYYKLIAQEDASHTEAIASIGIHHFYNDQPELALRYYRRLLQMGV 339

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
           YNAELFNNL LCCFY+QQYD V++CFERA+SL+ +EN AD+WYNISH+A+ + D  +A +
Sbjct: 340 YNAELFNNLGLCCFYAQQYDHVISCFERAISLSTDENMADIWYNISHIALTVGDITMAEE 399

Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
           CL LA+  D+ H L+ NN  V++ R G+I  A TY  AAA  + ++YE H+N A ++   
Sbjct: 400 CLKLAIVSDNRHALAYNNFGVIQIRNGNITAARTYFHAAANIANFIYEPHFNSAYLAYKV 459

Query: 305 GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339
           GDLQ SY  ++KSL ++P HS S  +L KLE+YFS
Sbjct: 460 GDLQTSYIAIQKSLSVYPNHSDSRTLLNKLERYFS 494

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729289|ref|XP_003402937.1| PREDICTED: tetratricopeptide repeat protein 8-like [Bombus terrestris]

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 124/217 (57%), Positives = 167/217 (76%)

Query: 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
           + +IF+GLNNM MS+KYYKLI + DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG+
Sbjct: 548 MGRIFDGLNNMSMSLKYYKLIAQEDASHTEAIASIGIHHFYNDQPELALRYYRRLLQMGV 607

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
           YNAELFNNL LCCFY+QQYD V++CFERA+SL+ +EN AD+WYNISH+A+ + D  +A +
Sbjct: 608 YNAELFNNLGLCCFYAQQYDHVISCFERAISLSTDENMADIWYNISHIALTVGDITMAEE 667

Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
           CL LA+  D+ H L+ NN  V++ R G+I  A TY  AAA  + ++YE H+N A ++   
Sbjct: 668 CLKLAIVSDNRHALAYNNFGVIQIRNGNITAARTYFHAAANIANFIYEPHFNSAYLAYKV 727

Query: 305 GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
           GDLQ SY  ++KSL ++P HS S  +L KLE+YFS++
Sbjct: 728 GDLQTSYIAIQKSLSVYPNHSDSRTLLNKLERYFSHV 764

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66548094|ref|XP_397338.2| PREDICTED: tetratricopeptide repeat protein 8-like isoform 1 [Apis mellifera]

 Score =  273 bits (698), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 124/217 (57%), Positives = 166/217 (76%)

Query: 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
           + +IF+GLNNM MS+KYYK+I + DA+  EAIA IG+ HFYNDQPE+AL +YRRLLQMG+
Sbjct: 280 MGRIFDGLNNMSMSLKYYKIIAQEDASHTEAIASIGIYHFYNDQPELALRYYRRLLQMGV 339

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
           YNAELFNNL LCCFY+QQYD V++CFERA++L+ +EN AD+WYNISH+AI + D  +A +
Sbjct: 340 YNAELFNNLGLCCFYAQQYDHVISCFERAITLSTDENIADIWYNISHIAITVGDIMMAEE 399

Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
           CL LA+  D+ H L+ NNL V++ R G+I  A TY  AAA  + ++YE H+N A ++   
Sbjct: 400 CLKLAIVNDNRHALAYNNLGVIQIRNGNITAARTYFHAAANIANFIYEPHFNSAYLAYEI 459

Query: 305 GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
           GDLQ SY  +KKSL+ +P H  S  +L KLE+YFS++
Sbjct: 460 GDLQTSYIAIKKSLNTYPNHYDSRTLLNKLERYFSHV 496

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177659|gb|EFN66705.1| Tetratricopeptide repeat protein 8 [Camponotus floridanus]

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/217 (58%), Positives = 168/217 (77%)

Query: 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
           +++IFEGLNN  MS+KYYK+I + DA+  EAIA IG++HFYNDQPE+AL +YRRLLQMG+
Sbjct: 120 MSRIFEGLNNTTMSMKYYKIIAQEDASHTEAIASIGMHHFYNDQPELALRYYRRLLQMGV 179

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
           +NAELFNNL LCCFY+QQYD  ++CFERAL+LA +EN ADVWYNISH+AI + D  +A +
Sbjct: 180 HNAELFNNLGLCCFYAQQYDHTISCFERALNLATDENLADVWYNISHIAITLGDIIMAEE 239

Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
           CL LA++ D+ H L+ NNL V+E R G++  A TY  AAA  + Y+YE H+N A ++   
Sbjct: 240 CLRLAIASDNRHALAYNNLGVIEMRNGNVTAARTYFHAAANIASYVYEAHFNSAYLAYEV 299

Query: 305 GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
           GDLQ SY  V+KSL  +PGH  S  +L+KL++YFS++
Sbjct: 300 GDLQTSYIAVQKSLLAYPGHYDSKTLLQKLQRYFSHI 336

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197097962|ref|NP_001125804.1| tetratricopeptide repeat protein 8 [Pongo abelii] gi|55729257|emb|CAH91364.1| hypothetical protein [Pongo abelii]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/218 (58%), Positives = 165/218 (75%), Gaps = 1/218 (0%)

Query: 125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
           +A+I+E +NNM  + +YYK +LK+D T +EAIACIG NHFY+DQPE+AL FYRRLLQMG+
Sbjct: 288 IARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGI 347

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVAIGISDTRLAI 243
           YN +LFNNL LCCFY+QQYDM +T FERALSLA N E AADVWYN+ HVA+GI DT LA 
Sbjct: 348 YNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHVAVGIGDTNLAH 407

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
           QC  LAL  ++ H  + NNLAVLE R+GH+E+A   LQ A++ +P++YE H+N A IS+ 
Sbjct: 408 QCFRLALVNNNHHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATISDK 467

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
            GDLQ SY  V+KS    P H  +  ++++L Q+F+ L
Sbjct: 468 IGDLQRSYVAVQKSEAAFPDHVDTQHLIKQLRQHFAML 505

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
UNIPROTKB|Q8TAM2	541	TTC8 "Tetratricopeptide repeat	0.636	0.401	0.577	2.8e-101
RGD|1307769	515	Ttc8 "tetratricopeptide repeat	0.636	0.421	0.573	3.2e-100
UNIPROTKB|E2REN6	540	TTC8 "Uncharacterized protein"	0.636	0.401	0.564	4.1e-100
UNIPROTKB|B3KSL8	276	TTC8 "Tetratricopeptide repeat	0.636	0.786	0.577	1.2e-65
UNIPROTKB|F1N4X0	506	TTC8 "Uncharacterized protein"	0.636	0.428	0.577	3.2e-65
ZFIN|ZDB-GENE-030131-8846	507	ttc8 "tetratricopeptide repeat	0.636	0.428	0.564	4.1e-65
MGI|MGI:1923510	515	Ttc8 "tetratricopeptide repeat	0.636	0.421	0.568	1.8e-64
UNIPROTKB|F1SDY6	506	TTC8 "Uncharacterized protein"	0.636	0.428	0.566	7.6e-64
UNIPROTKB|E1C4G5	515	TTC8 "Uncharacterized protein"	0.636	0.421	0.532	1.9e-60
FB|FBgn0031255	549	BBS8 "BBS8" [Drosophila melano	0.530	0.329	0.406	3.6e-44

UNIPROTKB|Q8TAM2 TTC8 "Tetratricopeptide repeat protein 8" [Homo sapiens (taxid:9606)]

 Score = 668 (240.2 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
 Identities = 126/218 (57%), Positives = 165/218 (75%)

Query:   125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
             +A+I+E +NNM  + +YYK +LK+D T +EAIACIG NHFY+DQPE+AL FYRRLLQMG+
Sbjct:   324 IARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGI 383

Query:   185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIGISDTRLAI 243
             YN +LFNNL LCCFY+QQYDM +T FERALSLA NE  AADVWYN+ HVA+GI DT LA 
Sbjct:   384 YNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHVAVGIGDTNLAH 443

Query:   244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             QC  LAL  +++H  + NNLAVLE R+GH+E+A   LQ A++ +P++YE H+N A IS+ 
Sbjct:   444 QCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATISDK 503

Query:   304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
              GDLQ SY   +KS    P H  +  ++++L Q+F+ L
Sbjct:   504 IGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML 541

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0060170 "cilium membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0034464 "BBSome" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0042384 "cilium assembly" evidence=TAS

GO:0005929 "cilium" evidence=IDA

GO:0048560 "establishment of anatomical structure orientation" evidence=IMP

GO:0050893 "sensory processing" evidence=TAS

RGD|1307769 Ttc8 "tetratricopeptide repeat domain 8" [Rattus norvegicus (taxid:10116)]

 Score = 659 (237.0 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
 Identities = 125/218 (57%), Positives = 164/218 (75%)

Query:   125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
             +A+I+E +NN   + +YYK +LK+D T +EAIACIG NHFY+DQPEVAL FYRRLLQMG+
Sbjct:   298 IARIYEEMNNSSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEVALRFYRRLLQMGV 357

Query:   185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIGISDTRLAI 243
             YN +LFNNL LCCFY+QQYDM +T FERALSLA NE  AADVWYN+ H+A+GI DT LA 
Sbjct:   358 YNCQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHIAVGIGDTNLAH 417

Query:   244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             QC  LAL  ++ H  + NNLAVLE R+GHIE+A   LQ A++ +P++YE H+N A +S+ 
Sbjct:   418 QCFRLALVHNNHHAEAYNNLAVLEMRKGHIEQARALLQTASSLAPHMYEPHFNFATVSDK 477

Query:   304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
              GDLQ SY   +KS    P H  +  ++++L+Q+F+ L
Sbjct:   478 IGDLQRSYVAAQKSEAAFPEHVDTQHLIKQLKQHFAML 515

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005813 "centrosome" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0005932 "microtubule basal body" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0007608 "sensory perception of smell" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0021772 "olfactory bulb development" evidence=ISO

GO:0032391 "photoreceptor connecting cilium" evidence=ISO

GO:0032880 "regulation of protein localization" evidence=ISO

GO:0034464 "BBSome" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0042384 "cilium assembly" evidence=ISO

GO:0048560 "establishment of anatomical structure orientation" evidence=ISO

GO:0060219 "camera-type eye photoreceptor cell differentiation" evidence=ISO

GO:0061326 "renal tubule development" evidence=ISO

UNIPROTKB|E2REN6 TTC8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 661 (237.7 bits), Expect = 4.1e-100, Sum P(2) = 4.1e-100
 Identities = 123/218 (56%), Positives = 166/218 (76%)

Query:   125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
             +A+I+E +NN+  + +YYK +LK+D T +EAIACIG NHFY+DQPE+AL FYRRLLQMG+
Sbjct:   323 IARIYEEMNNISSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGV 382

Query:   185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIGISDTRLAI 243
             YN +LFNNL LCCFY+QQYDM +T FERAL+LA NE  AADVWYN+ H+A+GI D  LA 
Sbjct:   383 YNCQLFNNLGLCCFYAQQYDMTLTSFERALALAENEEEAADVWYNLGHIAVGIGDMNLAH 442

Query:   244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             QC  LAL  +++H  + NNLAVLE R+GHIE+A   LQ A++ +P++YE H+N A +S+ 
Sbjct:   443 QCFRLALVNNNNHAEAYNNLAVLEMRKGHIEQARALLQTASSLAPHMYEPHFNFATVSDK 502

Query:   304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
              GDLQ SY   +KS    PGH  +  ++++L+Q+F+ L
Sbjct:   503 IGDLQRSYVAAQKSEAAFPGHVDTQHLIKQLKQHFAML 540

GO:0048560 "establishment of anatomical structure orientation" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044441 "cilium part" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|B3KSL8 TTC8 "Tetratricopeptide repeat domain 8, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 126/218 (57%), Positives = 165/218 (75%)

Query:   125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
             +A+I+E +NNM  + +YYK +LK+D T +EAIACIG NHFY+DQPE+AL FYRRLLQMG+
Sbjct:    59 IARIYEEMNNMSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEIALRFYRRLLQMGI 118

Query:   185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIGISDTRLAI 243
             YN +LFNNL LCCFY+QQYDM +T FERALSLA NE  AADVWYN+ HVA+GI DT LA 
Sbjct:   119 YNGQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHVAVGIGDTNLAH 178

Query:   244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             QC  LAL  +++H  + NNLAVLE R+GH+E+A   LQ A++ +P++YE H+N A IS+ 
Sbjct:   179 QCFRLALVNNNNHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATISDK 238

Query:   304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
              GDLQ SY   +KS    P H  +  ++++L Q+F+ L
Sbjct:   239 IGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLRQHFAML 276

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

UNIPROTKB|F1N4X0 TTC8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 126/218 (57%), Positives = 161/218 (73%)

Query:   125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
             +A+I+E +NN+  + +YYK +LK+D T +EAIACIG NHFY DQPEVAL FYRRLLQMG+
Sbjct:   289 IARIYEEMNNISSATEYYKEVLKQDNTHVEAIACIGSNHFYTDQPEVALRFYRRLLQMGV 348

Query:   185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIGISDTRLAI 243
             YN +LFNNL LCCFY+QQYDM +T FERALSLA NE   ADVWYN+ HVA+G  DT LA 
Sbjct:   349 YNCQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEVADVWYNLGHVAVGTGDTNLAH 408

Query:   244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             QC  LAL  ++ H  + NNLAVLE R GH+E+A   LQ A++ +P++YE H+N A IS+ 
Sbjct:   409 QCFRLALVSNNQHAEAYNNLAVLEMRRGHVEQAKALLQTASSLAPHMYEPHFNFATISDK 468

Query:   304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
              GDLQ SY   KKS    P H  +  ++++LEQ+F+ L
Sbjct:   469 IGDLQRSYAAAKKSEAAFPDHVDTQHLIKQLEQHFAML 506

GO:0048560 "establishment of anatomical structure orientation" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044441 "cilium part" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

ZFIN|ZDB-GENE-030131-8846 ttc8 "tetratricopeptide repeat domain 8" [Danio rerio (taxid:7955)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 123/218 (56%), Positives = 162/218 (74%)

Query:   125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
             +A+I E +NNM  + +YY+ +LK+D T +EAIACIG  HFY DQPE+AL FYRRLLQMG+
Sbjct:   290 IARIHEEMNNMSSATEYYREVLKQDNTHVEAIACIGSTHFYTDQPEIALRFYRRLLQMGV 349

Query:   185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLAL-NENAADVWYNISHVAIGISDTRLAI 243
             +N +L+NNL LCCFY+QQYDM ++C ERAL+L   +E  ADVWYN+ HVA+GI D  LA 
Sbjct:   350 FNCQLYNNLGLCCFYAQQYDMSLSCLERALALVSGDEEQADVWYNLGHVAVGIGDLTLAY 409

Query:   244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             QC  L+L+ +++HG + NNLAVLE R+GHIE+A  +LQ AA+ SP++YE HYN A +S+ 
Sbjct:   410 QCFKLSLAFNNNHGEAYNNLAVLELRKGHIEQAKAFLQTAASLSPHMYEPHYNYATLSDK 469

Query:   304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
              GDLQ S+   +KS D  P H  +  ILR L Q+FS L
Sbjct:   470 VGDLQSSFTAAQKSEDAFPEHVDTQQILRSLRQHFSSL 507

GO:0046907 "intracellular transport" evidence=IMP

GO:0032402 "melanosome transport" evidence=IMP

GO:0051877 "pigment granule aggregation in cell center" evidence=IMP

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0001755 "neural crest cell migration" evidence=IMP

GO:0060026 "convergent extension" evidence=IMP

MGI|MGI:1923510 Ttc8 "tetratricopeptide repeat domain 8" [Mus musculus (taxid:10090)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 124/218 (56%), Positives = 164/218 (75%)

Query:   125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
             +A+I+E +NN   + +YYK +LK+D T +EAIACIG NHFY+DQPEVAL FYRRLLQMG+
Sbjct:   298 IARIYEEMNNSSSAAEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEVALRFYRRLLQMGV 357

Query:   185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIGISDTRLAI 243
             YN +LFNNL LCCFY+QQYDM +T FERALSLA NE  AADVWYN+ H+A+GI DT LA 
Sbjct:   358 YNCQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEAADVWYNLGHIAVGIGDTNLAH 417

Query:   244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             QC  LAL  ++ H  + NNLAVLE R+GH+E+A   LQ A++ +P++YE H+N A +S+ 
Sbjct:   418 QCFRLALVHNNHHAEAYNNLAVLEMRKGHVEQARALLQTASSLAPHMYEPHFNFATVSDK 477

Query:   304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
              GDLQ SY   +KS    P H  +  ++++L+Q+F+ L
Sbjct:   478 IGDLQRSYVAAQKSEVAFPEHVDTQHLIKQLKQHFAML 515

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005929 "cilium" evidence=ISO

GO:0005932 "microtubule basal body" evidence=ISO

GO:0007411 "axon guidance" evidence=IGI

GO:0007608 "sensory perception of smell" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0021772 "olfactory bulb development" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IMP

GO:0034464 "BBSome" evidence=ISO;IDA

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0042384 "cilium assembly" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0048560 "establishment of anatomical structure orientation" evidence=ISO

GO:0060219 "camera-type eye photoreceptor cell differentiation" evidence=IMP

GO:0061326 "renal tubule development" evidence=IMP

UNIPROTKB|F1SDY6 TTC8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 124/219 (56%), Positives = 165/219 (75%)

Query:   125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR-LLQMG 183
             +A+I+E +NN+P + +YYK +LK+D T +EAIACIG NHFY+DQPEVAL FYRR LLQMG
Sbjct:   288 IARIYEEMNNIPSATEYYKEVLKQDNTHVEAIACIGSNHFYSDQPEVALRFYRRRLLQMG 347

Query:   184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIGISDTRLA 242
             +YN +LFNNL LCCFY+QQYDM +T FERALSLA NE   ADVWYN+ HVA+GI DT LA
Sbjct:   348 VYNCQLFNNLGLCCFYAQQYDMTLTSFERALSLAENEEEVADVWYNLGHVAVGIGDTNLA 407

Query:   243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
              QC  LAL  ++ H  + NNLAVLE R+GH+++A   LQ A++ +P++YE H+N A IS+
Sbjct:   408 HQCFRLALVNNNHHAEAYNNLAVLEMRKGHVDQARALLQTASSLAPHMYEPHFNFATISD 467

Query:   303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
               GDLQ SY   +KS    P H  +  ++++L+++F+ L
Sbjct:   468 KIGDLQRSYVAAQKSEAAFPDHVDTQHLIKQLKRHFAML 506

GO:0048560 "establishment of anatomical structure orientation" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044441 "cilium part" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|E1C4G5 TTC8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 116/218 (53%), Positives = 159/218 (72%)

Query:   125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
             +A+I+E +N++  + +YYK +LK+D T +EAIACIG N FY+DQPE+AL FYRRLLQMG+
Sbjct:   298 IARIYEEMNDISSAAEYYKEVLKQDNTHVEAIACIGSNRFYSDQPEIALRFYRRLLQMGV 357

Query:   185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYNISHVAIGISDTRLAI 243
             YN +LFNNL LCCFY+QQYDM +T FERAL LA NE   ADVWYN+ HVA+GI D  LA 
Sbjct:   358 YNYQLFNNLGLCCFYAQQYDMTLTSFERALFLAENEEERADVWYNLGHVAVGIGDLNLAY 417

Query:   244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             QC  L L  ++ +  + NNLAVLE ++GHIE+A   LQ A+  +P++YE H+N A++S  
Sbjct:   418 QCFKLTLVNNNDYAEAYNNLAVLEMQKGHIEQARALLQTASYLAPHMYEPHFNFAILSEK 477

Query:   304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
              GD Q SY   +KS +  PGH  +  ++++L++ F+ L
Sbjct:   478 VGDFQRSYMAAQKSEEAFPGHIDTQQLIKQLKERFAML 515

GO:0005813 "centrosome" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0044441 "cilium part" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0048560 "establishment of anatomical structure orientation" evidence=IEA

FB|FBgn0031255 BBS8 "BBS8" [Drosophila melanogaster (taxid:7227)]

 Score = 360 (131.8 bits), Expect = 3.6e-44, Sum P(2) = 3.6e-44
 Identities = 74/182 (40%), Positives = 110/182 (60%)

Query:   116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
             PF    RL  A+I + +     +++ Y+L  K     +E++A I V +FY++ PE+AL++
Sbjct:   358 PFDVTYRLEQARIHQAMEQQEDALQLYRLAAKLHPINVESLASIAVGYFYDNNPEMALMY 417

Query:   176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-ADVWYNISHVAI 234
             YRR+L +G  + EL+ N+ALCC Y  Q D+V+ CF+RAL+ A      +D+WYN+S VA+
Sbjct:   418 YRRILSLGAQSPELYCNIALCCLYGGQIDLVLPCFQRALATATQPGQKSDIWYNLSFVAV 477

Query:   235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
                D  LA +CL L L+ D+ +G + NNLAVL A+ G I  A +YL AA    P   E  
Sbjct:   478 TSGDFNLAKRCLQLCLTSDAQNGAALNNLAVLAAQSGDILGAKSYLNAAKDVMPDAAEVT 537

Query:   295 YN 296
              N
Sbjct:   538 TN 539

GO:0005575 "cellular_component" evidence=ND

GO:0042384 "cilium assembly" evidence=ISM;IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VD72	TTC8_MOUSE	No assigned EC number	0.5688	0.6363	0.4213	yes	N/A
Q8TAM2	TTC8_HUMAN	No assigned EC number	0.5779	0.6363	0.4011	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	341
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-07
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	7e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-05
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	8e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 55.1 bits (133), Expect = 8e-10
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLH 247
           E   NL    +    YD  +  +E+AL L  + + AD +YN++     +     A++   
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYE 58

Query: 248 LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
            AL +D  +  +  NL +   + G  E A    + A    P
Sbjct: 59  KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 24/94 (25%), Positives = 48/94 (51%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           LNL  ++  L +   +++YY+  L+ D    +A   +   ++   + E AL  Y + L++
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL 216
              NA+ + NL L  +   +Y+  +  +E+AL L
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
           +G  ++     + AL +Y + L++   NA+ + NLA   +   +Y+  +  +E+AL   L
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--L 63

Query: 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS 255
           + + A  +YN+      +     A++    AL +D +
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 22/99 (22%), Positives = 42/99 (42%)

Query: 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
           +   N+ ++   + D   A++    AL +D  +  +  NLA    + G  E A    + A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 284 AASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322
               P   + +YN  +     G  +E+    +K+L+L P
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 5/184 (2%)

Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN-HFYNDQPEVALL 174
           P +  + LNL  + E L     +++  +  L  D     A A + +   +     E AL 
Sbjct: 92  PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151

Query: 175 FYRRLLQMG---LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
            Y + L++       AE    L        +Y+  +   E+AL L  + + A+   N+  
Sbjct: 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD-DDAEALLNLGL 210

Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291
           + + +     A++    AL +D  +  +  NLA+L    G  E A   L+ A    P LY
Sbjct: 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLY 270

Query: 292 ETHY 295
               
Sbjct: 271 NLGL 274

Length = 291

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 35/145 (24%), Positives = 55/145 (37%)

Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
           + E A   +RR L +   N ++ NN         +Y+  +  FE+A+   L    A    
Sbjct: 80  ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE 139

Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
           N    A+   D   A + L  AL ID     S   LA L    G  + A  YL+    + 
Sbjct: 140 NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTY 199

Query: 288 PYLYETHYNQAVISNLAGDLQESYN 312
               E+ +    I+   GD+  +  
Sbjct: 200 NQTAESLWLGIRIARALGDVAAAQR 224

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 6/192 (3%)

Query: 141 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCCF 198
             + + K  A  +  +           +   AL      L++      A L   LAL   
Sbjct: 11  LLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALL 70

Query: 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL 258
              + +  +   E+AL L L  N A+   N+  +   +     A++ L  AL++D    L
Sbjct: 71  KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL 130

Query: 259 SQNNLA-VLEAREGHIERASTYLQAAAASSPYLYE---THYNQAVISNLAGDLQESYNIV 314
           ++  LA       G  E A    + A    P L E          +    G  +E+  ++
Sbjct: 131 AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190

Query: 315 KKSLDLHPGHSY 326
           +K+L L+P    
Sbjct: 191 EKALKLNPDDDA 202

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGI-SDTRLAIQ 244
           NAE   NL    F    YD  +  +E+A  L L+ + A+ +YN++   + +  D   A++
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKA--LELDPDNAEAYYNLALAYLKLGKDYEEALE 59

Query: 245 CLHLALSID 253
            L  AL +D
Sbjct: 60  DLEKALELD 68

Length = 69

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 142 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201
            K +L  D+  +E I  +  N +   + + AL  ++ L     YN+  +  LA CC   +
Sbjct: 6   LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK 65

Query: 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI---DSSHG- 257
           +Y+  +  +  A +L  ++           +A+G  +   A++ L LA+ I   +  +  
Sbjct: 66  EYEEAIDAYALAAALDPDDPRPYFHAAECLLALG--EPESALKALDLAIEICGENPEYSE 123

Query: 258 LSQNNLAVLEA 268
           L +   A+LE+
Sbjct: 124 LKERAEAMLES 134

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS-QQYDMVVTCFERALSLA 217
           G   F     + A+  Y + L++   NAE + NLAL      + Y+  +   E+AL L 
Sbjct: 10  GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELD 68

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
KOG1129|consensus	478		100.0
KOG4626|consensus	966		100.0
KOG4626|consensus	966		100.0
KOG1126|consensus	638		99.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.95
KOG1126|consensus	638		99.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.93
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.93
KOG1155|consensus	559		99.93
KOG1125|consensus	579		99.92
KOG1173|consensus	611		99.92
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.92
PRK11189	296	lipoprotein NlpI; Provisional	99.92
PRK12370	553	invasion protein regulator; Provisional	99.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.92
KOG1155|consensus	559		99.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.91
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
KOG0547|consensus	606		99.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.9
PRK12370	553	invasion protein regulator; Provisional	99.9
KOG0547|consensus	606		99.9
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.89
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.88
PLN02789	320	farnesyltranstransferase	99.87
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.87
KOG1125|consensus	579		99.86
KOG1129|consensus	478		99.85
KOG2076|consensus	895		99.85
KOG2003|consensus	840		99.85
KOG1173|consensus	611		99.84
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
KOG0624|consensus	504		99.83
PRK11189	296	lipoprotein NlpI; Provisional	99.83
KOG2002|consensus	1018		99.83
PLN02789	320	farnesyltranstransferase	99.83
KOG2002|consensus	1018		99.82
KOG0624|consensus	504		99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.82
KOG2076|consensus	895		99.82
KOG1840|consensus	508		99.82
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.81
KOG1174|consensus	564		99.81
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.81
PRK15359	144	type III secretion system chaperone protein SscB;	99.81
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.8
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.8
KOG0548|consensus	539		99.8
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.79
PRK15359	144	type III secretion system chaperone protein SscB;	99.78
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.78
KOG4162|consensus	799		99.77
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.77
KOG1840|consensus	508		99.77
KOG2003|consensus	840		99.76
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.76
PRK14574	822	hmsH outer membrane protein; Provisional	99.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.75
KOG3060|consensus	289		99.75
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.75
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.74
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.74
KOG0550|consensus	486		99.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.73
KOG0548|consensus	539		99.72
KOG0495|consensus	913		99.72
PRK14574	822	hmsH outer membrane protein; Provisional	99.72
KOG0550|consensus	486		99.71
KOG0495|consensus	913		99.7
KOG0553|consensus	304		99.7
KOG4162|consensus	799		99.7
KOG1174|consensus	564		99.68
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.68
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.68
KOG3060|consensus	289		99.68
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.66
KOG1156|consensus	700		99.66
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.65
KOG1128|consensus	777		99.63
KOG0553|consensus	304		99.63
KOG1127|consensus	1238		99.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.57
KOG1127|consensus	1238		99.57
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.57
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.56
PLN03218	1060	maturation of RBCL 1; Provisional	99.55
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.55
KOG1128|consensus	777		99.54
KOG1130|consensus	639		99.53
PLN03218	1060	maturation of RBCL 1; Provisional	99.52
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.49
KOG2376|consensus	652		99.49
KOG1156|consensus	700		99.48
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.48
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.48
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.48
KOG1130|consensus	639		99.47
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.46
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.45
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.44
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.44
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.4
PLN03077	857	Protein ECB2; Provisional	99.4
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.39
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.38
PLN03077	857	Protein ECB2; Provisional	99.38
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.37
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.37
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.37
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.37
KOG4340|consensus	459		99.36
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.36
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.36
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.36
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.36
KOG3785|consensus	557		99.35
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.35
KOG3785|consensus	557		99.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.34
KOG1915|consensus	677		99.32
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.32
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.31
PRK15331	165	chaperone protein SicA; Provisional	99.3
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.3
PRK11906	458	transcriptional regulator; Provisional	99.3
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.29
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.29
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.28
KOG1915|consensus	677		99.28
PRK10803	263	tol-pal system protein YbgF; Provisional	99.27
KOG0543|consensus	397		99.27
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.27
KOG1070|consensus	1710		99.27
KOG0543|consensus	397		99.27
PRK11906	458	transcriptional regulator; Provisional	99.26
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.25
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.25
PRK10803	263	tol-pal system protein YbgF; Provisional	99.24
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.24
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.23
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.23
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.22
PRK15331	165	chaperone protein SicA; Provisional	99.2
PF12688	120	TPR_5: Tetratrico peptide repeat	99.18
PRK04841	903	transcriptional regulator MalT; Provisional	99.14
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.13
PRK04841	903	transcriptional regulator MalT; Provisional	99.13
PF12688	120	TPR_5: Tetratrico peptide repeat	99.12
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.12
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.11
KOG4234|consensus	271		99.09
KOG2376|consensus	652		99.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.08
KOG1941|consensus	518		99.06
KOG4648|consensus	536		99.06
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.06
PF13512	142	TPR_18: Tetratricopeptide repeat	99.04
KOG4648|consensus	536		99.04
KOG1070|consensus	1710		99.03
PF13371	73	TPR_9: Tetratricopeptide repeat	99.03
KOG4340|consensus	459		99.03
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.02
KOG4234|consensus	271		99.02
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.0
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.0
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.97
PF13371	73	TPR_9: Tetratricopeptide repeat	98.95
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.93
KOG3081|consensus	299		98.92
KOG1586|consensus	288		98.9
KOG2047|consensus	835		98.88
PF13512	142	TPR_18: Tetratricopeptide repeat	98.88
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.87
KOG2047|consensus	835		98.86
KOG3081|consensus	299		98.86
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.85
KOG2796|consensus	366		98.85
KOG1941|consensus	518		98.84
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.84
KOG2796|consensus	366		98.81
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.8
KOG4555|consensus	175		98.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.75
KOG2053|consensus	932		98.74
KOG4555|consensus	175		98.74
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.69
KOG2610|consensus	491		98.68
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.67
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.66
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.64
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.63
KOG2610|consensus	491		98.61
KOG1585|consensus	308		98.55
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.54
KOG4642|consensus	284		98.49
KOG3617|consensus	1416		98.47
KOG4642|consensus	284		98.47
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.47
PF13428	44	TPR_14: Tetratricopeptide repeat	98.46
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.41
PF13428	44	TPR_14: Tetratricopeptide repeat	98.41
KOG0376|consensus	476		98.4
KOG3617|consensus	1416		98.37
KOG0545|consensus	329		98.32
KOG1585|consensus	308		98.31
PF13431	34	TPR_17: Tetratricopeptide repeat	98.26
KOG0545|consensus	329		98.25
PF13431	34	TPR_17: Tetratricopeptide repeat	98.25
KOG2471|consensus	696		98.24
KOG1586|consensus	288		98.23
KOG0530|consensus	318		98.21
KOG2471|consensus	696		98.21
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.2
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.19
KOG4507|consensus	886		98.19
KOG0376|consensus	476		98.19
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.18
KOG2053|consensus	932		98.16
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.16
KOG2300|consensus	629		98.13
KOG0551|consensus	390		98.1
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.1
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.09
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.08
KOG0551|consensus	390		98.07
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.06
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	98.06
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.04
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.99
KOG0530|consensus	318		97.97
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.95
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.94
KOG2300|consensus	629		97.93
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.91
KOG1258|consensus	577		97.86
KOG1550|consensus	552		97.81
KOG1914|consensus	656		97.79
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.79
KOG1308|consensus	377		97.78
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.76
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.75
KOG1258|consensus	577		97.71
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.69
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.69
KOG1308|consensus	377		97.67
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.66
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.65
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.63
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.61
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.56
KOG4507|consensus	886		97.54
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.53
KOG1914|consensus	656		97.51
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.48
KOG1550|consensus	552		97.46
PRK10941	269	hypothetical protein; Provisional	97.46
KOG0985|consensus	1666		97.46
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.44
KOG2396|consensus	568		97.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.35
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.3
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.27
KOG2422|consensus	665		97.27
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.26
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.25
KOG3824|consensus	472		97.22
PRK10941	269	hypothetical protein; Provisional	97.19
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.18
KOG3616|consensus	1636		97.18
KOG3824|consensus	472		97.17
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.14
KOG1464|consensus	440		97.13
KOG0985|consensus	1666		97.12
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.12
KOG2396|consensus	568		97.09
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.07
KOG3616|consensus	1636		97.05
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.04
KOG3364|consensus	149		97.03
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.01
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.93
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.93
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.91
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.88
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.85
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.83
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.8
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.78
KOG3364|consensus	149		96.77
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.77
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.76
KOG3783|consensus	546		96.75
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.75
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.72
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.71
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.68
KOG2041|consensus	1189		96.66
KOG1310|consensus	758		96.63
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.63
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.62
KOG3807|consensus	556		96.61
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.54
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.53
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.52
KOG4814|consensus	872		96.5
KOG1839|consensus	1236		96.49
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.48
KOG3807|consensus	556		96.44
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.43
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.41
KOG0890|consensus	2382		96.4
KOG4814|consensus	872		96.25
KOG1310|consensus	758		96.23
KOG1839|consensus	1236		96.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.02
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.01
KOG2581|consensus	493		95.98
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.83
KOG0529|consensus	421		95.82
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.75
COG1747	711	Uncharacterized N-terminal domain of the transcrip	95.69
KOG2041|consensus	1189		95.61
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.52
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.51
KOG2581|consensus	493		95.5
COG2912	269	Uncharacterized conserved protein [Function unknow	95.44
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.23
KOG2422|consensus	665		95.18
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.16
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.13
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.1
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.94
KOG0529|consensus	421		94.91
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.86
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.75
COG2912	269	Uncharacterized conserved protein [Function unknow	94.75
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.62
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.58
KOG1464|consensus	440		94.56
KOG1538|consensus	1081		94.45
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.34
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.21
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.21
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.19
KOG0890|consensus	2382		94.06
KOG4014|consensus	248		94.03
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.96
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.92
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.87
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.83
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.65
COG4941	415	Predicted RNA polymerase sigma factor containing a	93.58
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.52
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.5
COG3947	361	Response regulator containing CheY-like receiver a	93.13
KOG0686|consensus	466		92.92
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.92
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	92.88
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.76
COG3947	361	Response regulator containing CheY-like receiver a	92.74
KOG0546|consensus	372		92.71
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.63
KOG2114|consensus	933		92.56
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	92.56
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	92.17
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	91.95
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.87
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.8
COG4941	415	Predicted RNA polymerase sigma factor containing a	91.65
KOG0546|consensus	372		91.53
PRK11619	644	lytic murein transglycosylase; Provisional	91.51
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.42
KOG1463|consensus	411		91.35
COG3014	449	Uncharacterized protein conserved in bacteria [Fun	91.17
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.05
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	90.83
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.67
KOG1463|consensus	411		90.54
PF13041	50	PPR_2: PPR repeat family	90.48
PF12854	34	PPR_1: PPR repeat	90.45
COG5159	421	RPN6 26S proteasome regulatory complex component [	90.41
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	90.35
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.27
PF13041	50	PPR_2: PPR repeat family	90.21
KOG4014|consensus	248		90.18
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.08
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.61
KOG1538|consensus	1081		89.59
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.44
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.04
KOG4151|consensus	748		88.92
KOG2114|consensus	933		88.81
PF12854	34	PPR_1: PPR repeat	88.79
KOG0687|consensus	393		88.65
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.6
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	88.51
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	88.14
smart00299	140	CLH Clathrin heavy chain repeat homology.	87.97
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	87.55
PHA02537	230	M terminase endonuclease subunit; Provisional	87.23
COG5159	421	RPN6 26S proteasome regulatory complex component [	87.16
KOG0276|consensus	794		86.68
COG5187	412	RPN7 26S proteasome regulatory complex component,	86.59
KOG1920|consensus	1265		85.92
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	85.73
COG5187	412	RPN7 26S proteasome regulatory complex component,	85.72
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	85.57
KOG4521|consensus	1480		85.37
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	85.32
KOG0687|consensus	393		84.33
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	84.28
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	83.14
KOG0276|consensus	794		82.97
PRK09687	280	putative lyase; Provisional	82.2
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	82.01
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.0
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	81.96
PF04348	536	LppC: LppC putative lipoprotein; InterPro: IPR0074	81.94
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	81.86
PRK11619	644	lytic murein transglycosylase; Provisional	81.56
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	81.37
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	81.15
TIGR02710	380	CRISPR-associated protein, TIGR02710 family. Membe	80.47
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	80.39
KOG3783|consensus	546		80.3
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	80.27
KOG2063|consensus	877		80.13

>KOG1129|consensus

Probab=100.00  E-value=1.6e-46  Score=298.07  Aligned_cols=335  Identities=27%  Similarity=0.307  Sum_probs=303.1

Q ss_pred             CcchhhhhhcccccccccccchhhccccccccCCCCCCccCCcccCC--CCCCCCCCCCCCCCcceeccCCCccCCCCch
Q psy16588          1 MRSLTSQLSVDDLEAEEEGIADSVLDTNTIATAARPGTSLKTAAVTA--PALTSRPRTESGRPVSGVVRPGTLASRGGTL   78 (341)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (341)
                      |||||++||+||+++++.|+++.++|.+.|++.+|||+|+++|.++.  +++..+|.+..|+|++|+++|....+++|++
T Consensus        45 mraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm  124 (478)
T KOG1129|consen   45 MRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKTPFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSM  124 (478)
T ss_pred             HHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccCCCCCCCCCchhhcchhhcCCCCccccCccccCCCCccH
Confidence            68999999999999999999999999999999999999999999887  6788899999999999999999999999999


Q ss_pred             HhhhcccccccccCCccchhHhhhhhhhhhcccCCCCCchhHhhhcHH--------------------------------
Q psy16588         79 EQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLA--------------------------------  126 (341)
Q Consensus        79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------------------------  126 (341)
                      ++|+++.|.+.+++++++.+++..|+|++++...++.+|+..+++++-                                
T Consensus       125 ~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~  204 (478)
T KOG1129|consen  125 AQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQA  204 (478)
T ss_pred             HhhccCccccccccccccccchhhhhhhhhhhccCCcceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888887765                                


Q ss_pred             --------------------------HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy16588        127 --------------------------KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL  180 (341)
Q Consensus       127 --------------------------~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  180 (341)
                                                .+|++.|-+.+|.+.++..++..| .++.+..++.+|....+.+.|+..|.+.+
T Consensus       205 ~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gl  283 (478)
T KOG1129|consen  205 VLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGL  283 (478)
T ss_pred             HHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhh
Confidence                                      788888889999999999888877 67888888888988888899999999888


Q ss_pred             HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        181 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ  260 (341)
Q Consensus       181 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  260 (341)
                      ...|.+...+...+.++...+++++|.++|+.+++.+|.+  .++...+|..|+..++.+-|+.+|++.+.+.-.+++.+
T Consensus       284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf  361 (478)
T KOG1129|consen  284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF  361 (478)
T ss_pred             hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence            8889888888888999999999999999999999998888  88888888888888888999999999988888889999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        261 NNLAVLEAREGHIERASTYLQAAAASSPY---LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      +++|.+++..++++-++..|++++....+   -.++|+++|.+....|++.-|..+|+-++..+++|.+++.+++.+...
T Consensus       362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r  441 (478)
T KOG1129|consen  362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR  441 (478)
T ss_pred             hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh
Confidence            99999999999999999999999886542   346899999999999999999999999999999999999988887765


Q ss_pred             h
Q psy16588        338 F  338 (341)
Q Consensus       338 ~  338 (341)
                      -
T Consensus       442 ~  442 (478)
T KOG1129|consen  442 S  442 (478)
T ss_pred             c
Confidence            3

>KOG4626|consensus

Probab=100.00  E-value=7.6e-33  Score=237.08  Aligned_cols=257  Identities=19%  Similarity=0.196  Sum_probs=184.6

Q ss_pred             CCCchHhhhcccccccccCCccchhHhhhhhhh----------------hhcccCCCCCchhHhhhcHHHHHHHcCCchH
Q psy16588         74 RGGTLEQSLKTPRTAKSARPLTSQAARTIRLGT----------------ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPM  137 (341)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  137 (341)
                      ..|.+-.++..+..+.+..|.-.  ..++.+|.                .++...|++.   .++-++|.+|+.+|..+-
T Consensus       230 ~~Gei~~aiq~y~eAvkldP~f~--dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A---~a~gNla~iYyeqG~ldl  304 (966)
T KOG4626|consen  230 AQGEIWLAIQHYEEAVKLDPNFL--DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA---VAHGNLACIYYEQGLLDL  304 (966)
T ss_pred             hcchHHHHHHHHHHhhcCCCcch--HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch---hhccceEEEEeccccHHH
Confidence            34555555555555555555432  23444442                1233344444   556666677777777777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16588        138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA  217 (341)
Q Consensus       138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  217 (341)
                      |+..|+++++..|+.++++.++|..+...|+..+|..+|.+++.+.|+.+++.++||.+|..+|.+++|...|+++++..
T Consensus       305 AI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~  384 (966)
T KOG4626|consen  305 AIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF  384 (966)
T ss_pred             HHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHH
Q psy16588        218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQ  297 (341)
Q Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  297 (341)
                      |..  ..++.++|.+|.++|++++|+.+|++++++.|..++++.++|..|..+|+...|+.+|.+++.++|...+++.+|
T Consensus       385 p~~--aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL  462 (966)
T KOG4626|consen  385 PEF--AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL  462 (966)
T ss_pred             hhh--hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence            777  777777777777777777777777777777777777777777777777777777777777777777777777788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        298 AVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       298 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      |.+|...|+..+|+..|++++.+.|+.+++...+..+.+.
T Consensus       463 asi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~  502 (966)
T KOG4626|consen  463 ASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI  502 (966)
T ss_pred             HHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence            8888888888888888888888888887777776665543

>KOG4626|consensus

Probab=100.00  E-value=6.3e-33  Score=237.56  Aligned_cols=215  Identities=18%  Similarity=0.234  Sum_probs=130.6

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      .++++||.+|...+.+++|+..|.+++...|+++.++.++|.+|+.+|..+-|+..|++++++.|+.++++.++|..+-.
T Consensus       253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd  332 (966)
T KOG4626|consen  253 DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD  332 (966)
T ss_pred             HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence            55555555555555555555555555555555555555555555555555555555555555566666666666666666


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|+..+|..+|.+++.+.|..  +++.+++|.+|..+|.+++|..+|+++++..|..+.++.+||.+|.++|++++|+.+
T Consensus       333 ~G~V~ea~~cYnkaL~l~p~h--adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~  410 (966)
T KOG4626|consen  333 KGSVTEAVDCYNKALRLCPNH--ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC  410 (966)
T ss_pred             ccchHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence            666666666666666666665  666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      |++++.+.|...+++.++|..|..+|+...|+.+|.+++.++|...++...|+.+.+
T Consensus       411 YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  411 YKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             HHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            666666666666666666666666666666666666666666666666666655544

>KOG1126|consensus

Probab=99.95  E-value=2.2e-27  Score=205.68  Aligned_cols=218  Identities=16%  Similarity=0.238  Sum_probs=207.7

Q ss_pred             hhhcHHHHHHHcCCchHHHHHHHHHH----------------------------------HhCCCCHHHHHHHHHHHHhc
Q psy16588        121 SRLNLAKIFEGLNNMPMSVKYYKLIL----------------------------------KRDATCMEAIACIGVNHFYN  166 (341)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~l----------------------------------~~~~~~~~~~~~la~~~~~~  166 (341)
                      ....+|..|+..++|++|..+|+.+-                                  ..+|+.++.|..+|.||..+
T Consensus       355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ  434 (638)
T KOG1126|consen  355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ  434 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence            35567899999999999999998763                                  34566799999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16588        167 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL  246 (341)
Q Consensus       167 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  246 (341)
                      ++++.|+++|+++++++|....+|..+|.-+.....++.|..+|++++..+|.+  ..+|+.+|.+|.++++++.|.-+|
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh--YnAwYGlG~vy~Kqek~e~Ae~~f  512 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH--YNAWYGLGTVYLKQEKLEFAEFHF  512 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh--hHHHHhhhhheeccchhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       247 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      ++|++++|.+....+.+|.++.+.|+.++|+.+|++|+.++|.++-..+..+.+++.++++++|+..+++..++.|++..
T Consensus       513 qkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~  592 (638)
T KOG1126|consen  513 QKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS  592 (638)
T ss_pred             HhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q psy16588        327 SWDILRKLEQYFSY  340 (341)
Q Consensus       327 ~~~~l~~~~~~~~~  340 (341)
                      +++.++++.+.+++
T Consensus       593 v~~llgki~k~~~~  606 (638)
T KOG1126|consen  593 VFALLGKIYKRLGN  606 (638)
T ss_pred             HHHHHHHHHHHHcc
Confidence            99999999887754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.95  E-value=1.3e-25  Score=208.50  Aligned_cols=221  Identities=9%  Similarity=0.008  Sum_probs=177.3

Q ss_pred             CchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16588        116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL  195 (341)
Q Consensus       116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  195 (341)
                      +.....+..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~  407 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ  407 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            33346677888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16588        196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER  275 (341)
Q Consensus       196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  275 (341)
                      +++..|++++|+.+|++++.++|++  ...+..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++
T Consensus       408 ~~~~~g~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       408 LHFIKGEFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            8888888888888888888888888  88888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCchhHH------HHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        276 ASTYLQAAAASSPYLYETH------YNQAVI-SNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       276 A~~~~~~al~~~p~~~~~~------~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      |+..|++++.+.|++...+      .+.+.+ +...|++++|+.++++++.++|++..++..++.+....
T Consensus       486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~  555 (615)
T TIGR00990       486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ  555 (615)
T ss_pred             HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            8888888888877643322      222333 33468888888888888888888877777777665543

>KOG1126|consensus

Probab=99.95  E-value=1.3e-26  Score=200.91  Aligned_cols=213  Identities=15%  Similarity=0.187  Sum_probs=207.6

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  188 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  188 (341)
                      +..+|+.|   .+|-.+|.+|..+++++.|+++|+++++++|.+.-+|..+|.-+....++|+|..+|+.++..+|.+..
T Consensus       414 i~~~~~sP---esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn  490 (638)
T KOG1126|consen  414 IDTDPNSP---ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN  490 (638)
T ss_pred             HhhCCCCc---HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence            45678888   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA  268 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  268 (341)
                      +|+.+|.+|.++++++.|.-+|++|++++|.+  ......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.++.
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~  568 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF  568 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        269 REGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       269 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      ..+++++|+..+++..++.|+...+++.+|.+|.+.|+.+.|+..|.-|.+++|.-..
T Consensus       569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            9999999999999999999999999999999999999999999999999999998665

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.94  E-value=2.1e-24  Score=200.46  Aligned_cols=213  Identities=13%  Similarity=0.067  Sum_probs=195.0

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  188 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  188 (341)
                      +...|..+   ..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..
T Consensus       358 l~l~P~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~  434 (615)
T TIGR00990       358 IELDPRVT---QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF  434 (615)
T ss_pred             HHcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence            44456555   789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH------HHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS------QNN  262 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~  262 (341)
                      .+..+|.++...|++++|+..|++++...|.+  +.++..+|.++...|++++|+..|++++.+.|.....      +..
T Consensus       435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~  512 (615)
T TIGR00990       435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN  512 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence            99999999999999999999999999999999  9999999999999999999999999999999875332      223


Q ss_pred             HHHHH-HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        263 LAVLE-AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       263 l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      .+.++ ...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus       513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            33334 44699999999999999999999999999999999999999999999999999887554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.94  E-value=6.4e-24  Score=197.05  Aligned_cols=221  Identities=12%  Similarity=-0.019  Sum_probs=125.5

Q ss_pred             ccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHH
Q psy16588        110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL  189 (341)
Q Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  189 (341)
                      ...|+++   .++..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|++...
T Consensus       104 ~~~P~~~---~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a  180 (656)
T PRK15174        104 AVNVCQP---EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM  180 (656)
T ss_pred             HhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH
Confidence            3455555   5566666666666666666666666666666666666666666666666666666666666666666555


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      +..++. +...|++++|+..+++++...|.. .......++.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus       181 ~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~-~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~  258 (656)
T PRK15174        181 IATCLS-FLNKSRLPEDHDLARALLPFFALE-RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ  258 (656)
T ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            543321 333344444443333333332211 011222334455555666666666666666666666666666666666


Q ss_pred             hCCHHH----HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        270 EGHIER----ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       270 ~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      .|++++    |+..|+++++++|++..++..+|.++...|++++|+..+++++.++|+++.++..++.+.
T Consensus       259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l  328 (656)
T PRK15174        259 SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL  328 (656)
T ss_pred             cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            666654    566666666666666666666666666666666666666666666666666555555544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=1.7e-23  Score=194.23  Aligned_cols=249  Identities=13%  Similarity=-0.000  Sum_probs=177.4

Q ss_pred             CCCchHhhhcccccccccCCccchhHhhhhhhh----------------hhcccCCCCCchhHhhhcHHHHHHHcCCchH
Q psy16588         74 RGGTLEQSLKTPRTAKSARPLTSQAARTIRLGT----------------ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPM  137 (341)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  137 (341)
                      ..|..++|+..+++.....|.....  ...++.                .++...|+++   ..+..++.++...|++++
T Consensus        88 ~~g~~~~A~~~l~~~l~~~P~~~~a--~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~---~a~~~la~~l~~~g~~~e  162 (656)
T PRK15174         88 ASSQPDAVLQVVNKLLAVNVCQPED--VLLVASVLLKSKQYATVADLAEQAWLAFSGNS---QIFALHLRTLVLMDKELQ  162 (656)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCChHH
Confidence            4677888888887766666655422  122221                2344567777   778899999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16588        138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSL  216 (341)
Q Consensus       138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  216 (341)
                      |+..+++++...|++..++..++. +...|++++|+..+++++...|. .......++.++...|++++|+..|++++..
T Consensus       163 A~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~  241 (656)
T PRK15174        163 AISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR  241 (656)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999999999999888766543 66677777777777777766542 2333445566667777777777777777777


Q ss_pred             ccccchHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        217 ALNENAADVWYNISHVAIGISDTRL----AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       217 ~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      +|++  ..+++.+|.++...|++++    |+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|++..
T Consensus       242 ~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~  319 (656)
T PRK15174        242 GLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY  319 (656)
T ss_pred             CCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            7776  7777777777777777764    677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI  330 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  330 (341)
                      ++..+|.++...|++++|+..|++++..+|++......
T Consensus       320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~  357 (656)
T PRK15174        320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY  357 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            77777777777777777777777777777766544433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.93  E-value=2.9e-23  Score=158.52  Aligned_cols=211  Identities=19%  Similarity=0.139  Sum_probs=197.3

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ..+++.||.-|++.|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      .+|++++|...|++++... .. .....|-|+|.|..+.|+++.|.++|+++++.+|+.+.....++..++..|+|-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence            9999999999999999853 22 448899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI  330 (341)
Q Consensus       278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  330 (341)
                      .++++.....+-..+.+.....+-...|+-+.+..+=.+.....|...+....
T Consensus       194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f  246 (250)
T COG3063         194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF  246 (250)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence            99999998888778888888888999999999999988888999998776543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.93  E-value=9.9e-23  Score=166.72  Aligned_cols=204  Identities=21%  Similarity=0.182  Sum_probs=190.6

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ...++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.|++++...|.+...+..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      ..|++++|+..+++++...+.......+..+|.++...|++++|...++++++.+|++...+..+|.++...|++++|+.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999998643222277899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      .+++++...|.+...+..++.++...|+.++|..+.+.+....|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            99999999888888888999999999999999999888776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155|consensus

Probab=99.93  E-value=2.3e-23  Score=173.59  Aligned_cols=217  Identities=16%  Similarity=0.179  Sum_probs=202.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ...--+|..|...++.++|+.+|+++++++|....+|..+|+-|..+++...|++.|++|++++|.+..+|+.||+.|.-
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            44555678888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      ++...=|+-+|++++...|.+  ...|..+|.||.+.++.++|+++|++++.....+..++..+|.+|.+++++.+|..+
T Consensus       411 m~Mh~YaLyYfqkA~~~kPnD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~  488 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELKPND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY  488 (559)
T ss_pred             hcchHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999  999999999999999999999999999999988899999999999999999999999


Q ss_pred             HHHHHH-------hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        280 LQAAAA-------SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       280 ~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      |++.++       ..|....+...|+..+.+.+++++|..+..+++.-++...++...+..+.+..
T Consensus       489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~  554 (559)
T KOG1155|consen  489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQ  554 (559)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            999998       34555667778999999999999999999999999888888888888887654

>KOG1125|consensus

Probab=99.92  E-value=1.6e-23  Score=179.15  Aligned_cols=202  Identities=16%  Similarity=0.161  Sum_probs=188.9

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  201 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  201 (341)
                      -+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.++...++-..|+..++++++++|++.+++..||..|...|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhh-----------------------------------------ccccchHHHHHHHHHHHHhcCCHH
Q psy16588        202 QYDMVVTCFERALSL-----------------------------------------ALNENAADVWYNISHVAIGISDTR  240 (341)
Q Consensus       202 ~~~~A~~~~~~al~~-----------------------------------------~~~~~~~~~~~~la~~~~~~g~~~  240 (341)
                      .-.+|..++.+.+..                                         .|....+++...||.+|...|+|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            999999999888765                                         221112677888999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       241 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      +|+.+|+.||...|++...|+.||-.+..-.+.++|+..|.+|+++.|....++++||.++..+|.|++|.++|-.||.+
T Consensus       448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCC
Q psy16588        321 HPG  323 (341)
Q Consensus       321 ~p~  323 (341)
                      .+.
T Consensus       528 q~k  530 (579)
T KOG1125|consen  528 QRK  530 (579)
T ss_pred             hhc
Confidence            765

>KOG1173|consensus

Probab=99.92  E-value=4.2e-23  Score=175.94  Aligned_cols=231  Identities=18%  Similarity=0.162  Sum_probs=213.0

Q ss_pred             hhhhhhhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy16588        101 TIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL  180 (341)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  180 (341)
                      ..-+|..-+...|+.+   .+|+.+|..|+..|++.+|..+|.++..++|....+|...|..+...|+.+.|+.+|..|-
T Consensus       297 Lf~lsh~LV~~yP~~a---~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa  373 (611)
T KOG1173|consen  297 LFLLSHKLVDLYPSKA---LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA  373 (611)
T ss_pred             HHHHHHHHHHhCCCCC---cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence            3444455566778887   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------
Q psy16588        181 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-------  253 (341)
Q Consensus       181 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------  253 (341)
                      ++-|........+|.-|...+++..|..+|.+++.+.|.+  +-++..+|.+.+..+.|.+|..+|+.++..-       
T Consensus       374 rl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D--plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~  451 (611)
T KOG1173|consen  374 RLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD--PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK  451 (611)
T ss_pred             HhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence            9999999999999999999999999999999999999999  9999999999999999999999999999432       


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        254 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       254 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      +.....+.++|.++.+++++++|+.+|++++.+.|.+..++..+|.+|..+|+++.|+.+|.+++.+.|++..+...|..
T Consensus       452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL  531 (611)
T ss_pred             cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            12345789999999999999999999999999999999999999999999999999999999999999999888777765


Q ss_pred             HHH
Q psy16588        334 LEQ  336 (341)
Q Consensus       334 ~~~  336 (341)
                      .-+
T Consensus       532 aie  534 (611)
T KOG1173|consen  532 AIE  534 (611)
T ss_pred             HHH
Confidence            543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.92  E-value=1.4e-22  Score=192.69  Aligned_cols=212  Identities=14%  Similarity=0.104  Sum_probs=192.3

Q ss_pred             hhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16588        121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  200 (341)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  200 (341)
                      ..+.++.++...|++++|+..|++++...|. ...++.+|.++...|++++|+.+|+++++.+|.....+..++......
T Consensus       511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~  589 (987)
T PRK09782        511 QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP  589 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence            3666677778999999999999998777555 456788899999999999999999999999999888888777777788


Q ss_pred             CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16588        201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL  280 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  280 (341)
                      |++++|+..|+++++.+| +  ..++.++|.++.+.|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|
T Consensus       590 Gr~~eAl~~~~~AL~l~P-~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIAP-S--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999 4  7899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       281 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      +++++++|+++.+++++|.++..+|++++|+.+|++++++.|++.......+.+..
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999777766555543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.92  E-value=1.5e-22  Score=170.53  Aligned_cols=213  Identities=14%  Similarity=0.093  Sum_probs=176.8

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ...++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++.++|.++.
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      ..|++++|+..|+++++.+|++  +..... ..+....+++++|+..|.+.+...+..  .|. .+.++...|++.++ .
T Consensus       144 ~~g~~~eA~~~~~~al~~~P~~--~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~  216 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQDDPND--PYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-T  216 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCC--HHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-H
Confidence            9999999999999999999998  532211 223456789999999998877554322  222 35566667776443 2


Q ss_pred             HHHHH-------HHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Q psy16588        279 YLQAA-------AASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP-GHSYSWDILRKLEQYF  338 (341)
Q Consensus       279 ~~~~a-------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~  338 (341)
                      .++.+       .++.|....+|+++|.++...|++++|+.+|+++++.+| ++.+.++.+..+....
T Consensus       217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~  284 (296)
T PRK11189        217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG  284 (296)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            33333       355667778999999999999999999999999999996 7788877777666553

>PRK12370 invasion protein regulator; Provisional

Probab=99.92  E-value=6.4e-23  Score=187.41  Aligned_cols=200  Identities=12%  Similarity=0.027  Sum_probs=183.5

Q ss_pred             CCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16588        133 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN---------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY  203 (341)
Q Consensus       133 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  203 (341)
                      +++++|+.+|+++++.+|+++.++..+|.+|...         +++++|+..++++++++|+++.++..+|.++...|++
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            3467999999999999999999999999887643         3489999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        204 DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       204 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      ++|+.+|+++++++|++  +.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..++++
T Consensus       355 ~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~  432 (553)
T PRK12370        355 IVGSLLFKQANLLSPIS--ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL  432 (553)
T ss_pred             HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999999999999  9999999999999999999999999999999999888777787888899999999999999


Q ss_pred             HHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        284 AASS-PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       284 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      +... |+++..+..+|.++..+|++++|...++++....|++..++..+..+
T Consensus       433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~  484 (553)
T PRK12370        433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE  484 (553)
T ss_pred             HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence            9875 77888899999999999999999999999988888877766666543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.92  E-value=2e-22  Score=198.93  Aligned_cols=209  Identities=12%  Similarity=0.093  Sum_probs=190.3

Q ss_pred             cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH--------------H
Q psy16588        124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE--------------L  189 (341)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~  189 (341)
                      .+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            34788999999999999999999999999999999999999999999999999999999997642              1


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL---  266 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~---  266 (341)
                      ...+|.++...|++++|+..|++++..+|.+  ..++..+|.++...|++++|+..|+++++.+|++..++..++.+   
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~--~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~  431 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTD--SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ  431 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            2345888999999999999999999999999  99999999999999999999999999999999987766555443   


Q ss_pred             ---------------------------------------HHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16588        267 ---------------------------------------EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDL  307 (341)
Q Consensus       267 ---------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  307 (341)
                                                             +...|++++|+..|+++++++|+++.+++.++.+|...|++
T Consensus       432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence                                                   45679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        308 QESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       308 ~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      ++|+..|+++++..|+++.+++.++.+
T Consensus       512 ~~A~~~l~~al~~~P~~~~~~~a~al~  538 (1157)
T PRK11447        512 SQADALMRRLAQQKPNDPEQVYAYGLY  538 (1157)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            999999999999999999888766544

>KOG1155|consensus

Probab=99.91  E-value=2.1e-22  Score=167.85  Aligned_cols=194  Identities=13%  Similarity=0.135  Sum_probs=150.6

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhCCCCHH---H-------------------------------HHHHHHHHHhcCChH
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRDATCME---A-------------------------------IACIGVNHFYNDQPE  170 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~-------------------------------~~~la~~~~~~~~~~  170 (341)
                      .|.+.+.+.|+++|+..|+.+.+.+|-..+   .                               ...+|+.|...++.+
T Consensus       268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE  347 (559)
T KOG1155|consen  268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE  347 (559)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence            346667778888888888888877775211   1                               112455555667778


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16588        171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL  250 (341)
Q Consensus       171 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  250 (341)
                      +|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.+  ..+|+.+|++|.-++...=|+-+|++++
T Consensus       348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D--yRAWYGLGQaYeim~Mh~YaLyYfqkA~  425 (559)
T KOG1155|consen  348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD--YRAWYGLGQAYEIMKMHFYALYYFQKAL  425 (559)
T ss_pred             HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--HHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888  8888888888888888888888888888


Q ss_pred             hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        251 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       251 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      +..|.+...|..||.+|.+.++.++|+++|++++.....+..++..||.+|.+.++.++|..+|++.++.
T Consensus       426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888877777778888888888888888888888887764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.91  E-value=1.1e-21  Score=190.89  Aligned_cols=221  Identities=16%  Similarity=0.160  Sum_probs=199.8

Q ss_pred             cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH
Q psy16588        111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF  190 (341)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  190 (341)
                      ..|.++   ..+..+|.++...|++++|+..|+++++.+|++..+++.++.++...|++++|+..|++++...|.+..++
T Consensus       460 ~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  536 (899)
T TIGR02917       460 KQPDNA---SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI  536 (899)
T ss_pred             hCCCCc---HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            345555   67888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                      ..++.++...|++++|+..+++++..+|.+  ...+..++.++...|++++|+..++++++..|.+...|..+|.++...
T Consensus       537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (899)
T TIGR02917       537 LALAGLYLRTGNEEEAVAWLEKAAELNPQE--IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA  614 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999888  888899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        271 GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       271 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      |++++|+..|+++++..|.+..++..++.++...|++++|+..|++++..+|++..++..+..+..
T Consensus       615 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  680 (899)
T TIGR02917       615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL  680 (899)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888877766554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.91  E-value=1.1e-21  Score=186.43  Aligned_cols=215  Identities=13%  Similarity=0.086  Sum_probs=197.3

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ...+.++|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..+..+|.++.
T Consensus       477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all  553 (987)
T PRK09782        477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQ  553 (987)
T ss_pred             HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHH
Confidence            3889999999987 899999999999999999754 46667888889999999999999988776654 55789999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      ..|++++|+.+|+++++..|..  ...+..++......|++++|+..|+++++.+|+ ..++.++|.++.+.|++++|+.
T Consensus       554 ~~Gd~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~  630 (987)
T PRK09782        554 AAGNGAARDRWLQQAEQRGLGD--NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS  630 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999988  778878888888889999999999999999996 9999999999999999999999


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .|++++.++|++..++.++|.++...|++++|+..|+++++++|+++.++..++.+....+
T Consensus       631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG  691 (987)
T PRK09782        631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD  691 (987)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999999999999999998877654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.91  E-value=8.2e-22  Score=194.55  Aligned_cols=222  Identities=14%  Similarity=0.060  Sum_probs=147.5

Q ss_pred             hcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHH-------------------------
Q psy16588        108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN-------------------------  162 (341)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~-------------------------  162 (341)
                      ++...|+++   .+++.+|.++...|++++|+..|+++++.+|++..++..++.+                         
T Consensus       377 Al~~~P~~~---~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~  453 (1157)
T PRK11447        377 ARQVDNTDS---YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID  453 (1157)
T ss_pred             HHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence            344566666   6788888999999999999999999999888887766554443                         


Q ss_pred             -----------------HHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHH
Q psy16588        163 -----------------HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV  225 (341)
Q Consensus       163 -----------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  225 (341)
                                       +...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..++++++..|.+  +..
T Consensus       454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~--~~~  531 (1157)
T PRK11447        454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND--PEQ  531 (1157)
T ss_pred             HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHH
Confidence                             4456888899999999999999988888999999999999999999999888888776  555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH----------------------------------------HhcCCCCHHHHHHHHH
Q psy16588        226 WYNISHVAIGISDTRLAIQCLHLA----------------------------------------LSIDSSHGLSQNNLAV  265 (341)
Q Consensus       226 ~~~la~~~~~~g~~~~A~~~~~~a----------------------------------------l~~~p~~~~~~~~l~~  265 (341)
                      ++.++..+...+++++|+..++++                                        ++..|.++..+..+|.
T Consensus       532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~  611 (1157)
T PRK11447        532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD  611 (1157)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence            544444444444444443333221                                        1123444445555555


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        266 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       266 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      ++...|++++|+..|+++++.+|++..++..++.+|...|++++|+..|+++++..|++...+..++.+
T Consensus       612 ~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~  680 (1157)
T PRK11447        612 WAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA  680 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555555555555555544444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=2.3e-21  Score=171.19  Aligned_cols=211  Identities=13%  Similarity=0.066  Sum_probs=176.2

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-----HHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLA  194 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la  194 (341)
                      ..+..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+.     ..+..+|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45677888888889999999999998888888888888889899889999999999998888777643     2456788


Q ss_pred             HHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCH
Q psy16588        195 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-GLSQNNLAVLEAREGHI  273 (341)
Q Consensus       195 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~  273 (341)
                      .++...|++++|+.+|+++++..|..  ..+++.+|.++...|++++|++.+++++..+|.+ ..++..++.+|...|++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~  265 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE  265 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence            88888899999999999998888888  8888889999999999999999999998887765 45677888888899999


Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      ++|+..++++++..|+.. .+..++.++.+.|++++|+..++++++..|++......+..
T Consensus       266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~  324 (389)
T PRK11788        266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY  324 (389)
T ss_pred             HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            999999999988888764 44788888999999999999999999888888766544443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=1.3e-21  Score=172.89  Aligned_cols=223  Identities=17%  Similarity=0.187  Sum_probs=196.0

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  184 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  184 (341)
                      +..+|++.   ..+..+|.++...|++++|+..+++++...+..    ..++..+|.+|...|++++|+.+|+++++..|
T Consensus        62 l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~  138 (389)
T PRK11788         62 LKVDPETV---ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD  138 (389)
T ss_pred             HhcCcccH---HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc
Confidence            34455554   778899999999999999999999999864332    35688999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16588        185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN---AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQN  261 (341)
Q Consensus       185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  261 (341)
                      .+..++..++.++...|++++|++.++++++..|.+.   ....+..+|.++...|++++|+..|+++++.+|++..++.
T Consensus       139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  218 (389)
T PRK11788        139 FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI  218 (389)
T ss_pred             chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH
Confidence            9999999999999999999999999999999887651   1345678999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        262 NLAVLEAREGHIERASTYLQAAAASSPYL-YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      .+|.++...|++++|+..|+++++.+|.+ ..++..++.+|...|++++|+..++++++..|+.... ..++.+.
T Consensus       219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~  292 (389)
T PRK11788        219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLL  292 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHH
Confidence            99999999999999999999999998876 3577889999999999999999999999999987554 4555443

>KOG0547|consensus

Probab=99.91  E-value=2.1e-22  Score=168.85  Aligned_cols=219  Identities=13%  Similarity=0.124  Sum_probs=179.3

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ..+....|..++-.|++-.|...|+.+|.++|.+...|..++.+|....+.++....|.++..++|+++++|+..|++++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            45666677788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      -++++++|+.-|++++.++|++  ...+..++.+.++++++++++..|+++.+..|+.++++...|.++..+++|++|++
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k  483 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPEN--AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK  483 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence            8888888888888888888888  88888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhCCC------chhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        279 YLQAAAASSPY------LYETHYNQAVI-SNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       279 ~~~~al~~~p~------~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .|..++++.|.      +...+.+.|.+ +...+++..|+.+++++++++|....++..++++.-+.+
T Consensus       484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~  551 (606)
T KOG0547|consen  484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG  551 (606)
T ss_pred             HHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence            88888888887      44444443333 223478888888888888888888888888887765543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.90  E-value=2.1e-21  Score=189.02  Aligned_cols=213  Identities=15%  Similarity=0.040  Sum_probs=150.9

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++..
T Consensus       602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  681 (899)
T TIGR02917       602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA  681 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            55666777777777777777777777777777777777777777777777777777777777777766666666666666


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|++++|+..++.+....|..  ...+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..
T Consensus       682 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~  758 (899)
T TIGR02917       682 AKRTESAKKIAKSLQKQHPKA--ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKT  758 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCcCC--hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHH
Confidence            666666666666666666666  6666777777777777777777777777776665 5566667777777777777777


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      ++++++..|++..+++.+|.++...|++++|+.+|+++++..|+++.++..++.+.
T Consensus       759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  814 (899)
T TIGR02917       759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY  814 (899)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777766666655543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK12370 invasion protein regulator; Provisional

Probab=99.90  E-value=1.8e-21  Score=177.95  Aligned_cols=206  Identities=11%  Similarity=0.042  Sum_probs=184.0

Q ss_pred             hhcccCCCCCchhHhhhcHHHHHHHc---------CCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q psy16588        107 ASMLSQPDGPFIQVSRLNLAKIFEGL---------NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYR  177 (341)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  177 (341)
                      .++..+|+++   .++..+|.++...         +++++|+..++++++.+|+++.++..+|.++...|++++|+..|+
T Consensus       286 ~Al~ldP~~a---~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~  362 (553)
T PRK12370        286 QCVNMSPNSI---APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFK  362 (553)
T ss_pred             HHHhcCCccH---HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3455677776   6778888776533         448899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC
Q psy16588        178 RLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSH  256 (341)
Q Consensus       178 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~  256 (341)
                      ++++++|+++.+++.+|.++...|++++|+..++++++++|.+  ...+..++.+++..|++++|+..++++++.. |++
T Consensus       363 ~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~  440 (553)
T PRK12370        363 QANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN  440 (553)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC
Confidence            9999999999999999999999999999999999999999998  7777777777888999999999999999875 788


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      +..+..+|.++...|++++|+..+.+.....|....++..++..|...|+  +|...+++.++
T Consensus       441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~  501 (553)
T PRK12370        441 PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE  501 (553)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence            99999999999999999999999999998889888889999999988884  67776666554

>KOG0547|consensus

Probab=99.90  E-value=7.3e-22  Score=165.67  Aligned_cols=217  Identities=16%  Similarity=0.123  Sum_probs=196.7

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  188 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  188 (341)
                      +..+|.++   ..++.++.+|....+.++....|.++..++|+++++|+..|.+++-++++++|+.-|++++.++|++..
T Consensus       353 I~l~~~~~---~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~  429 (606)
T KOG0547|consen  353 IKLDPAFN---SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY  429 (606)
T ss_pred             HhcCcccc---hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence            33344444   448899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------HGLSQNN  262 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~  262 (341)
                      .+..++...+++++++++...|+.+.+..|..  ++++...|.++..+++|++|++.|++++++.|.      ++..+..
T Consensus       430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~  507 (606)
T KOG0547|consen  430 AYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH  507 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence            99999999999999999999999999999999  999999999999999999999999999999998      5555555


Q ss_pred             HHHHH-HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        263 LAVLE-AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI  330 (341)
Q Consensus       263 l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  330 (341)
                      .|.+. .-.+++..|+..++++++++|....++..||.+..++|+.++|+++|+++..+.-+..+..+.
T Consensus       508 Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a  576 (606)
T KOG0547|consen  508 KALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHA  576 (606)
T ss_pred             hhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            55544 335899999999999999999999999999999999999999999999999887665554433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.89  E-value=6e-21  Score=145.92  Aligned_cols=185  Identities=17%  Similarity=0.107  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      ..+...||.-|+..|++..|.+-++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++  .++++|.|..
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~--GdVLNNYG~F  112 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN--GDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--cchhhhhhHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16588        233 AIGISDTRLAIQCLHLALSID--SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES  310 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  310 (341)
                      ++.+|++++|...|++++..-  +..+.++-|+|.|..+.|+++.|..+|+++++++|+++.....++...++.|++..|
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            999999999999999999753  566789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        311 YNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       311 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      ..++++.....+-..+...+..++.+.++
T Consensus       193 r~~~~~~~~~~~~~A~sL~L~iriak~~g  221 (250)
T COG3063         193 RLYLERYQQRGGAQAESLLLGIRIAKRLG  221 (250)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHhc
Confidence            99999999888877777777777766554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.88  E-value=3.4e-20  Score=151.64  Aligned_cols=184  Identities=17%  Similarity=0.141  Sum_probs=171.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  231 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~  231 (341)
                      ....++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.+  ...+.++|.
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN--GDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Q psy16588        232 VAIGISDTRLAIQCLHLALSID--SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE  309 (341)
Q Consensus       232 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  309 (341)
                      ++...|++++|+..+++++...  +.....+..+|.++...|++++|...+++++..+|++...+..++.++...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999854  45677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        310 SYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       310 A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      |..++++++...|++...+..+..+...
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARA  215 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999988888877766666544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN02789 farnesyltranstransferase

Probab=99.87  E-value=1.3e-19  Score=152.40  Aligned_cols=211  Identities=12%  Similarity=0.054  Sum_probs=191.0

Q ss_pred             cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16588        124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ  202 (341)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  202 (341)
                      .+-.++...+.+++|+..+.+++..+|++..+|...+.++..+| ++++++..+.+++..+|++..+|+..+.++...|+
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~  121 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP  121 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc
Confidence            33456777889999999999999999999999999999999998 68999999999999999999999999999988887


Q ss_pred             h--hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCH----
Q psy16588        203 Y--DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE---GHI----  273 (341)
Q Consensus       203 ~--~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~----  273 (341)
                      .  ++++.+++++++.+|++  ..+|...+.++...|+++++++++.++++.+|.+..+|+..+.+....   |.+    
T Consensus       122 ~~~~~el~~~~kal~~dpkN--y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~  199 (320)
T PLN02789        122 DAANKELEFTRKILSLDAKN--YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR  199 (320)
T ss_pred             hhhHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence            4  78899999999999999  999999999999999999999999999999999999999999998776   333    


Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        274 ERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      ++++.+..+++.++|++..+|..++.++..    .++..+|...+.+++...|++..+...+..+..
T Consensus       200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~  266 (320)
T PLN02789        200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC  266 (320)
T ss_pred             HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence            578888899999999999999999999988    456678999999999999999888877776654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.87  E-value=2.4e-21  Score=162.89  Aligned_cols=215  Identities=17%  Similarity=0.160  Sum_probs=114.4

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|+.+++++.+..+ ++..+..+..++..
T Consensus        45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~  122 (280)
T PF13429_consen   45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYR  122 (280)
T ss_dssp             ---------------------------------------------------------------------------H-HHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHH
Confidence            5566778888889999999999999998888888888788777 688899999999888887654 46667777788888


Q ss_pred             cCChhHHHHHHHHHHhhc--cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLA--LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      .++++++...++++....  +.+  ..+|..+|.++.+.|++++|+..|+++++.+|++..++..++.++...|+++++.
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~  200 (280)
T PF13429_consen  123 LGDYDEAEELLEKLEELPAAPDS--ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAR  200 (280)
T ss_dssp             TT-HHHHHHHHHHHHH-T---T---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHH
Confidence            899999999988877554  445  7888899999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      ..++......|.++..+..+|.++..+|++++|+.+|++++..+|+++.....++.+....
T Consensus       201 ~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~  261 (280)
T PF13429_consen  201 EALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA  261 (280)
T ss_dssp             HHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccc
Confidence            8888888887888888889999999999999999999999999999988888887765543

>KOG1125|consensus

Probab=99.86  E-value=5.5e-20  Score=157.69  Aligned_cols=225  Identities=15%  Similarity=0.128  Sum_probs=193.2

Q ss_pred             CCCchHhhhcccccccccCCccchhHhhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH
Q psy16588         74 RGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM  153 (341)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~  153 (341)
                      .+.-+.+++...+. +.       ....+-+-.+++..+|.+.   .+|..||.+....++-..|+..++++++++|++.
T Consensus       285 ~pdPf~eG~~lm~n-G~-------L~~A~LafEAAVkqdP~ha---eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl  353 (579)
T KOG1125|consen  285 HPDPFKEGCNLMKN-GD-------LSEAALAFEAAVKQDPQHA---EAWQKLGITQAENENEQNAISALRRCLELDPTNL  353 (579)
T ss_pred             CCChHHHHHHHHhc-CC-------chHHHHHHHHHHhhChHHH---HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH
Confidence            44556666666655 11       1123333467788889888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------------------------------------C--CcHHHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMG-----------------------------------------L--YNAELF  190 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------------------------------p--~~~~~~  190 (341)
                      +++..||..|...|.-..|++++.+-+...                                         |  .++++.
T Consensus       354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ  433 (579)
T KOG1125|consen  354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ  433 (579)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence            999999999999999888988888875432                                         3  456778


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                      ..||.+|...|+|++|+++|+.+|...|.+  ...|+.||-++....+..+|+..|++|+++.|....++++||..++.+
T Consensus       434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  434 SGLGVLYNLSGEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL  511 (579)
T ss_pred             hhhHHHHhcchHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence            999999999999999999999999999999  999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCc----------hhHHHHHHHHHHHcCCHHHHH
Q psy16588        271 GHIERASTYLQAAAASSPYL----------YETHYNQAVISNLAGDLQESY  311 (341)
Q Consensus       271 g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~  311 (341)
                      |.|++|+++|-.+|.+.+..          ..+|..|-.++..+++.+-+.
T Consensus       512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            99999999999999986541          247777777787778776443

>KOG1129|consensus

Probab=99.85  E-value=9.5e-21  Score=151.69  Aligned_cols=212  Identities=18%  Similarity=0.205  Sum_probs=200.2

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..++.|+.+|.+..+...|+..|.+.++..|.+...+..++.++..+++.++|.++|+.+++.+|.+.++...+|..|+.
T Consensus       257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY  336 (478)
T KOG1129|consen  257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY  336 (478)
T ss_pred             hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence            66777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhCCHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS---SHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      .++.+-|+.+|++.+.+.-.+  ++.+.++|.|++..++++-++..|++++....   .-.++|+++|.+....|++.-|
T Consensus       337 ~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA  414 (478)
T KOG1129|consen  337 DNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA  414 (478)
T ss_pred             CCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence            999999999999999999999  99999999999999999999999999998753   3478999999999999999999


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      ..+|+-++..++++..++.+|+.+-.+.|+.++|..++..+-...|+-.+..++++.
T Consensus       415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~  471 (478)
T KOG1129|consen  415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF  471 (478)
T ss_pred             HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence            999999999999999999999999999999999999999999999987776655543

>KOG2076|consensus

Probab=99.85  E-value=7.3e-19  Score=157.70  Aligned_cols=218  Identities=18%  Similarity=0.123  Sum_probs=181.5

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ...+..|...+..|++++|..++.++++.+|.++.+|+.||.+|.++|+.+++...+-.|-.++|.+.+.|..++.....
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            45566677777788999999999999999998888899999999999998888888888888888888888888888888


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------------------
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------------------------  255 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------------  255 (341)
                      +|++.+|.-+|.++++.+|.+  ....+..+.+|.+.|+...|+..|.+++...|.                        
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n--~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e  297 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSN--WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE  297 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence            888889988899988888888  888888888888888888888877776665551                        


Q ss_pred             --------------------------------------------------------------------------------
Q psy16588        256 --------------------------------------------------------------------------------  255 (341)
Q Consensus       256 --------------------------------------------------------------------------------  255 (341)
                                                                                                      
T Consensus       298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~  377 (895)
T KOG2076|consen  298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD  377 (895)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence                                                                                            


Q ss_pred             -----------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-chhHHHHHHH
Q psy16588        256 -----------------------------------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPY-LYETHYNQAV  299 (341)
Q Consensus       256 -----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~  299 (341)
                                                         ++..+..++.++...|++.+|+.+|..+....+. +..+|+.+|.
T Consensus       378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~  457 (895)
T KOG2076|consen  378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR  457 (895)
T ss_pred             chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence                                               0123344556666778999999999888776543 3569999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        300 ISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       300 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      ||..+|.+++|+.+|++++.+.|++.+++..|+.+.+.++
T Consensus       458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g  497 (895)
T KOG2076|consen  458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG  497 (895)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence            9999999999999999999999999999999999887654

>KOG2003|consensus

Probab=99.85  E-value=1.4e-19  Score=151.13  Aligned_cols=215  Identities=20%  Similarity=0.180  Sum_probs=204.2

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      .+..+-|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~  570 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL  570 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            66777788889999999999999999999999999999999999999999999999999988888999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      ..+..+|++++.++..+-|.+  +.++..+|.+|-+.|+-.+|..++-...+..|-+.++.-.||..|....-+++|+.+
T Consensus       571 led~aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y  648 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY  648 (840)
T ss_pred             hhCHHHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999999999  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      |+++--+.|+...-...++.|+.+.|+|++|...|+......|.+.+....+.++..
T Consensus       649 ~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~  705 (840)
T KOG2003|consen  649 FEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence            999999999988888889999999999999999999999999999998887776644

>KOG1173|consensus

Probab=99.84  E-value=4.7e-19  Score=151.51  Aligned_cols=211  Identities=12%  Similarity=0.056  Sum_probs=189.9

Q ss_pred             HHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16588        128 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV  207 (341)
Q Consensus       128 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  207 (341)
                      ++...|+..+-..+-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|....+|...|..+...+..++|+
T Consensus       287 ~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAm  366 (611)
T KOG1173|consen  287 CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAM  366 (611)
T ss_pred             HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHH
Confidence            55666666666666666677778888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      .+|..|-++.|..  ..-...+|.-|...++++-|.++|.+|+.+.|.++.++..+|.+.+..+.|.+|..+|+.++..-
T Consensus       367 aaY~tAarl~~G~--hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i  444 (611)
T KOG1173|consen  367 AAYFTAARLMPGC--HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI  444 (611)
T ss_pred             HHHHHHHHhccCC--cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence            9999999999998  78888899999999999999999999999999999999999999999999999999999998432


Q ss_pred             C-------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16588        288 P-------YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY  340 (341)
Q Consensus       288 p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  340 (341)
                      +       .....+.+||.++.+++++++|+.+|++++.+.|.+..++..++-+...++.
T Consensus       445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn  504 (611)
T KOG1173|consen  445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN  504 (611)
T ss_pred             hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence            1       2344789999999999999999999999999999999999988888877654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.84  E-value=4.3e-20  Score=155.32  Aligned_cols=196  Identities=17%  Similarity=0.094  Sum_probs=125.2

Q ss_pred             hhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Q psy16588        121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYNAELFNNLALCCF  198 (341)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~  198 (341)
                      .+..++.+ ...+++++|+.+++++.+..+ ++..+..+..++...++++++...++++....  +.++..|..+|.++.
T Consensus        80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  157 (280)
T PF13429_consen   80 DYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE  157 (280)
T ss_dssp             ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred             cccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            34444455 689999999999999988764 56777888888999999999999999987655  678899999999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      ..|++++|+.+|+++++.+|++  ..++..++.++...|+++++...++...+..|.++..+..+|.++..+|++++|+.
T Consensus       158 ~~G~~~~A~~~~~~al~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~  235 (280)
T PF13429_consen  158 QLGDPDKALRDYRKALELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE  235 (280)
T ss_dssp             HCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence            9999999999999999999999  99999999999999999999999999988889999999999999999999999999


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      +|++++..+|+++.++..+|.++...|+.++|..++++++..
T Consensus       236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999998754

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=3.2e-18  Score=162.29  Aligned_cols=206  Identities=13%  Similarity=-0.009  Sum_probs=182.4

Q ss_pred             HHHHcCCchHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCC
Q psy16588        128 IFEGLNNMPMSVKYYKLILKRDATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQ  202 (341)
Q Consensus       128 ~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~  202 (341)
                      .+...|++++|+..|+++++..+.. ..+...+|.+|...|++++|+..|++++..+|.+    ......++.++...|+
T Consensus       246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~  325 (765)
T PRK10049        246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN  325 (765)
T ss_pred             HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence            4467899999999999999886432 2344457999999999999999999999988766    4567778888999999


Q ss_pred             hhHHHHHHHHHHhhcccc-------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        203 YDMVVTCFERALSLALNE-------------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       203 ~~~A~~~~~~al~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      +++|+..++++....|..             ....++..++.++...|++++|++.+++++...|++..++..+|.++..
T Consensus       326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            999999999999987632             1145778999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      .|++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++.+...-..
T Consensus       406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~  469 (765)
T PRK10049        406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA  469 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999877654443

>KOG0624|consensus

Probab=99.83  E-value=2.8e-18  Score=138.51  Aligned_cols=220  Identities=18%  Similarity=0.175  Sum_probs=201.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      .-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+...|+.-+.+++++.|+...+....|.+++.
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhcccc-chHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNE-NAADV------------WYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL  266 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~-~~~~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  266 (341)
                      +|++++|..-|++.+.-+|.+ ...++            +......+...|+...|+++....+++.|=++..+...+.+
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc  198 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC  198 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence            999999999999999999865 11222            22334455667999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        267 EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       267 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      |...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.+..+++..+
T Consensus       199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888777666665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.83  E-value=2e-18  Score=145.54  Aligned_cols=201  Identities=13%  Similarity=0.018  Sum_probs=162.6

Q ss_pred             cCCchHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16588        132 LNNMPMSVKYYKLILKRDA----TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV  207 (341)
Q Consensus       132 ~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  207 (341)
                      .+..+.++..+.+++...+    ..+..|+.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3566888999999996443    346789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      ..|+++++++|++  ..++.++|.++...|++++|++.|+++++.+|+++..... ..+....+++++|+..|.+.+...
T Consensus       119 ~~~~~Al~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELDPTY--NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhC
Confidence            9999999999999  9999999999999999999999999999999998742221 223456789999999998877554


Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCCCHHHHHHHHHHHHHhh
Q psy16588        288 PYLYETHYNQAVISNLAGDLQESYNIVKKS-------LDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      +..  .|. .+.++...|+..++ ..++.+       .++.|+..++++.++.+....+
T Consensus       196 ~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g  250 (296)
T PRK11189        196 DKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLG  250 (296)
T ss_pred             Ccc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence            322  232 35566666766443 233333       3566777789999988877554

>KOG2002|consensus

Probab=99.83  E-value=1.2e-18  Score=157.45  Aligned_cols=222  Identities=20%  Similarity=0.156  Sum_probs=140.1

Q ss_pred             cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHH
Q psy16588        111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL  189 (341)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  189 (341)
                      ..|++.   ...+.-|.+.+..++|..|+.+|+.++..+|.. ++....+|.|+.++|+.+.|+..|.++++++|.+..+
T Consensus       159 ~sp~Ni---l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a  235 (1018)
T KOG2002|consen  159 QSPDNI---LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA  235 (1018)
T ss_pred             hCCcch---HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence            445555   566667777777777777777777777777653 4556677777777777777777777777777776666


Q ss_pred             HHHHHHHHHHcC---ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q psy16588        190 FNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS---HGLSQNNL  263 (341)
Q Consensus       190 ~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l  263 (341)
                      +..||.+-....   .+..++..+.++...++.+  +.++..++.-++..|+|..+..+...++.....   .++.++.+
T Consensus       236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n--P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~  313 (1018)
T KOG2002|consen  236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN--PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL  313 (1018)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC--cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            666665544433   3455666666666666666  666666666666666666666666666554422   23345666


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        264 AVLEAREGHIERASTYLQAAAASSPYL-YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      |.+|..+|+|++|..+|.+++..++++ .-.++.+|..|...|+++.|+.+|++++...|++.+....++.+...
T Consensus       314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~  388 (1018)
T KOG2002|consen  314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH  388 (1018)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence            666666666666666666666666555 44555666666666666666666666666666666666555555544

>PLN02789 farnesyltranstransferase

Probab=99.83  E-value=5.5e-18  Score=142.58  Aligned_cols=248  Identities=8%  Similarity=-0.001  Sum_probs=209.5

Q ss_pred             CchHhhhcccccccccCCccchhHhhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcC-CchHHHHHHHHHHHhCCCCHH
Q psy16588         76 GTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLN-NMPMSVKYYKLILKRDATCME  154 (341)
Q Consensus        76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~~~~~~  154 (341)
                      ..+.++..-+|.........   .+.+.+-..++..+|++.   .+|...+.++...| ++++++..+.+++..+|++..
T Consensus        34 ~~~~~a~~~~ra~l~~~e~s---erAL~lt~~aI~lnP~~y---taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq  107 (320)
T PLN02789         34 PEFREAMDYFRAVYASDERS---PRALDLTADVIRLNPGNY---TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ  107 (320)
T ss_pred             HHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCchhH---HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH
Confidence            34666666666644333332   356666667788889888   88999999999998 689999999999999999999


Q ss_pred             HHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        155 AIACIGVNHFYNDQP--EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       155 ~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      +|+..+.++...|+.  ++++.++.++++.+|++..+|...+.++...|+++++++++.++++.+|.+  ..+|+..+.+
T Consensus       108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N--~sAW~~R~~v  185 (320)
T PLN02789        108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN--NSAWNQRYFV  185 (320)
T ss_pred             HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--hhHHHHHHHH
Confidence            999999999988874  788999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHhc---CCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16588        233 AIGI---SDT----RLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVIS  301 (341)
Q Consensus       233 ~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  301 (341)
                      +...   |.+    ++++.+..+++..+|++..+|+.++.++..    .++..+|+..+.+++...|.+..++..|+.+|
T Consensus       186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~  265 (320)
T PLN02789        186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLL  265 (320)
T ss_pred             HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence            8776   333    578889999999999999999999999988    45677899999999999999999999999999


Q ss_pred             HHcC------------------CHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        302 NLAG------------------DLQESYNIVKKSLDLHPGHSYSWDIL  331 (341)
Q Consensus       302 ~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~l  331 (341)
                      ....                  ..++|...++..-..+|-....|...
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~  313 (320)
T PLN02789        266 CEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWR  313 (320)
T ss_pred             HhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence            8642                  34678888888766677666666543

>KOG2002|consensus

Probab=99.82  E-value=4.1e-18  Score=154.02  Aligned_cols=218  Identities=19%  Similarity=0.250  Sum_probs=200.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALC  196 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~  196 (341)
                      ..++..|.++.+.|+.+.|+..|.++++++|.+..++..||.+-....+   +..+...+.++...++.+|.++..|+..
T Consensus       200 D~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~  279 (1018)
T KOG2002|consen  200 DVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANH  279 (1018)
T ss_pred             CccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence            3467788999999999999999999999999999999999988776554   6789999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCHH
Q psy16588        197 CFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-GLSQNNLAVLEAREGHIE  274 (341)
Q Consensus       197 ~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~  274 (341)
                      ++..|+|..+..+..-++...... ...+.++.+|.+|..+|+|++|..+|.++++.++++ .-.++.+|.+|+..|+++
T Consensus       280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle  359 (1018)
T KOG2002|consen  280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE  359 (1018)
T ss_pred             HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence            999999999999999999876443 446789999999999999999999999999999998 778899999999999999


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        275 RASTYLQAAAASSPYLYETHYNQAVISNLAG----DLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       275 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      .|+.+|++.+...|++..+...||.+|...+    ..++|..+..+++...|.+.++|..++++...
T Consensus       360 ~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  360 ESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            9999999999999999999999999998886    67899999999999999999999999988653

>KOG0624|consensus

Probab=99.82  E-value=1.2e-17  Score=134.83  Aligned_cols=219  Identities=13%  Similarity=0.140  Sum_probs=185.2

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH---HHHH------------HHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM---EAIA------------CIGVNHFYNDQPEVALLFYRRLLQMGL  184 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p  184 (341)
                      .+++..|.+++++|++++|...|+.+++.+|++.   ++..            .....++..|+...++.+....++..|
T Consensus       107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~  186 (504)
T KOG0624|consen  107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP  186 (504)
T ss_pred             HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence            6777788888888888888888888888888532   2221            223344556888888888888888888


Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH---
Q psy16588        185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQN---  261 (341)
Q Consensus       185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---  261 (341)
                      .+...+...+.||...|+...|+.-++.+-++..++  .+.++.++.+++..|+.+.++...+++++++|++-..+-   
T Consensus       187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YK  264 (504)
T KOG0624|consen  187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYK  264 (504)
T ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHH
Confidence            888889999999999999999999999999999999  999999999999999999999999999999998632211   


Q ss_pred             -----------------------------------------------HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHH
Q psy16588        262 -----------------------------------------------NLAVLEAREGHIERASTYLQAAAASSPYLYETH  294 (341)
Q Consensus       262 -----------------------------------------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  294 (341)
                                                                     .+..++..-|++.+|+..+.+++.++|++..++
T Consensus       265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l  344 (504)
T KOG0624|consen  265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL  344 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence                                                           123345555889999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16588        295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY  340 (341)
Q Consensus       295 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  340 (341)
                      ...+.+|.-...|+.|+..|+++.+.+++|..+...+.+.++...+
T Consensus       345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq  390 (504)
T KOG0624|consen  345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ  390 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888876543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.82  E-value=1.4e-17  Score=157.95  Aligned_cols=144  Identities=10%  Similarity=-0.048  Sum_probs=81.2

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------C
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS---------------H  256 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~  256 (341)
                      |.+|...|++++|+.+|++++..+|..  ........++.++...|++++|+..++++....|.               .
T Consensus       279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~  358 (765)
T PRK10049        279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW  358 (765)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence            334444444444444444444333322  00123333444445555555555555555544431               1


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      ..++..++.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++.++|++...+..++.+..
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al  438 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL  438 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            23445566666666777777777777777777777777777777777777777777777777777777666666655544


Q ss_pred             H
Q psy16588        337 Y  337 (341)
Q Consensus       337 ~  337 (341)
                      .
T Consensus       439 ~  439 (765)
T PRK10049        439 D  439 (765)
T ss_pred             H
Confidence            3

>KOG2076|consensus

Probab=99.82  E-value=3.4e-18  Score=153.49  Aligned_cols=212  Identities=14%  Similarity=0.174  Sum_probs=186.9

Q ss_pred             hhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q psy16588        107 ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN  186 (341)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  186 (341)
                      ..+..+|.++   .+|..||.+|.+.|+.+++...+-.+-.++|++.+.|..++....++|+++.|.-+|.++++.+|.+
T Consensus       164 EvIkqdp~~~---~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  164 EVIKQDPRNP---IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN  240 (895)
T ss_pred             HHHHhCccch---hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence            3445566666   8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhh--------------------------------------------------
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERALSL--------------------------------------------------  216 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------------------------------------  216 (341)
                      ....+..+.+|.+.|+...|...|.+++..                                                  
T Consensus       241 ~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~n  320 (895)
T KOG2076|consen  241 WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLN  320 (895)
T ss_pred             hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHH
Confidence            999999999999999999999988888776                                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy16588        217 --------------------------------------------------------------------------------  216 (341)
Q Consensus       217 --------------------------------------------------------------------------------  216 (341)
                                                                                                      
T Consensus       321 i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll  400 (895)
T KOG2076|consen  321 ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALL  400 (895)
T ss_pred             HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHH
Confidence                                                                                            


Q ss_pred             ------c-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16588        217 ------A-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLEAREGHIERASTYLQAAAASSP  288 (341)
Q Consensus       217 ------~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  288 (341)
                            + +.....+.++.++.++...|++.+|+.+|..+....+. +..+|+.+|.+|..+|.+++|+++|++++...|
T Consensus       401 ~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p  480 (895)
T KOG2076|consen  401 HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP  480 (895)
T ss_pred             HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence                  1 00123667889999999999999999999999887653 467999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        289 YLYETHYNQAVISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                      ++.++...|+.++.++|+.++|.+.++....-+
T Consensus       481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  481 DNLDARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence            999999999999999999999999998877333

>KOG1840|consensus

Probab=99.82  E-value=6e-18  Score=148.50  Aligned_cols=225  Identities=17%  Similarity=0.124  Sum_probs=183.8

Q ss_pred             CCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q psy16588        113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--  182 (341)
Q Consensus       113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--  182 (341)
                      -.+|........++..|..+|+|++|+..++.+++.        .|.-......+|.+|..++++.+|+.+|++++.+  
T Consensus       193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e  272 (508)
T KOG1840|consen  193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE  272 (508)
T ss_pred             cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            345555566667999999999999999999999988        3433444556999999999999999999999975  


Q ss_pred             ------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc------chHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16588        183 ------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE------NAADVWYNISHVAIGISDTRLAIQCLHLAL  250 (341)
Q Consensus       183 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  250 (341)
                            +|..+.++.+||..|...|++++|..++++++++....      .....+.+++.++...+++++|+.++++++
T Consensus       273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence                  45556789999999999999999999999999884331      236678899999999999999999999998


Q ss_pred             hcC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCchhHHHHHHHHHHHcCCHHHHHHHH
Q psy16588        251 SID--------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS--------PYLYETHYNQAVISNLAGDLQESYNIV  314 (341)
Q Consensus       251 ~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~  314 (341)
                      ++.        +.-+..+.++|.+|..+|+|++|.++|++++.+.        +.....+.++|..|.+.+++.+|...|
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~  432 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF  432 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence            763        2336789999999999999999999999999875        222347788999999999999999999


Q ss_pred             HHHHhc----CCCCHHH---HHHHHHHHHH
Q psy16588        315 KKSLDL----HPGHSYS---WDILRKLEQY  337 (341)
Q Consensus       315 ~~al~~----~p~~~~~---~~~l~~~~~~  337 (341)
                      .++..+    .|+++..   +.+|+.+...
T Consensus       433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~  462 (508)
T KOG1840|consen  433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRA  462 (508)
T ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence            998865    4555444   4444444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.81  E-value=1.1e-17  Score=137.05  Aligned_cols=192  Identities=10%  Similarity=-0.002  Sum_probs=149.4

Q ss_pred             CCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH-
Q psy16588        113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM---EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE-  188 (341)
Q Consensus       113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-  188 (341)
                      |.+......++.+|..+...|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..|+++++..|+++. 
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            45555557888888888899999999999999988888765   57788899999999999999999999988887665 


Q ss_pred             --HHHHHHHHHHHc--------CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        189 --LFNNLALCCFYS--------QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL  258 (341)
Q Consensus       189 --~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  258 (341)
                        +++.+|.++...        |++++|+..|++++..+|++  ...+..+..+...    ...             ...
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~~~~~----~~~-------------~~~  167 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS--EYAPDAKKRMDYL----RNR-------------LAG  167 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC--hhHHHHHHHHHHH----HHH-------------HHH
Confidence              688888888876        77888888888888888887  4443222221111    000             012


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      ....+|.++...|++.+|+..|++++...|+.   ..+++.+|.++...|++++|..+++......|+
T Consensus       168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            23577888999999999999999999987764   468999999999999999999988887766653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1174|consensus

Probab=99.81  E-value=6.7e-18  Score=139.42  Aligned_cols=215  Identities=15%  Similarity=0.128  Sum_probs=196.9

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..|+--+...+...++..|+.+-+++|..+|.+..++...|..+...|+.++|+-.|+.+..+.|...+.|..|-.+|..
T Consensus       301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA  380 (564)
T KOG1174|consen  301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA  380 (564)
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence            44555667788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNIS-HVAI-GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      .|++.+|...-+.+++..|.+  +..+..+| .++. .-.--++|.+++++++++.|....+...++..+...|++++++
T Consensus       381 ~~~~kEA~~~An~~~~~~~~s--A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i  458 (564)
T KOG1174|consen  381 QKRFKEANALANWTIRLFQNS--ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII  458 (564)
T ss_pred             hchHHHHHHHHHHHHHHhhcc--hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence            999999999999999999999  88888886 4443 4445689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      ..+++.+...|+. ..+..||.++...+.+++|..+|..++.++|++..+...+.++.+.
T Consensus       459 ~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  459 KLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS  517 (564)
T ss_pred             HHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence            9999999988864 5788999999999999999999999999999999999999888764

>TIGR00540 hemY_coli hemY protein

Probab=99.81  E-value=3.6e-17  Score=144.51  Aligned_cols=217  Identities=8%  Similarity=-0.038  Sum_probs=162.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM-EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ..++..|.++.+.|+++.|..++.++.+..|++. .+....+.++...|+++.|+..+++.++..|+++.++..++.++.
T Consensus       119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~  198 (409)
T TIGR00540       119 LNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYI  198 (409)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4556667777777888888888888777777664 455556777777888888888888888888888888888888888


Q ss_pred             HcCChhHHHHHHHHHHhh--------------------------------------cccc--chHHHHHHHHHHHHhcCC
Q psy16588        199 YSQQYDMVVTCFERALSL--------------------------------------ALNE--NAADVWYNISHVAIGISD  238 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~--------------------------------------~~~~--~~~~~~~~la~~~~~~g~  238 (341)
                      ..|++++|.+.+.+..+.                                      .|..  ..+.++..++..+...|+
T Consensus       199 ~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~  278 (409)
T TIGR00540       199 RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD  278 (409)
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC
Confidence            888877777766666533                                      2210  125667778888889999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHcCCHHHHHHHH
Q psy16588        239 TRLAIQCLHLALSIDSSHGLSQ--NNLAVLEAREGHIERASTYLQAAAASSPYLY--ETHYNQAVISNLAGDLQESYNIV  314 (341)
Q Consensus       239 ~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~  314 (341)
                      +++|++.++++++..|++....  ..........++.+.+++.++++++..|+++  ..+..+|.++.+.|++++|.++|
T Consensus       279 ~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l  358 (409)
T TIGR00540       279 HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAF  358 (409)
T ss_pred             hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence            9999999999999988887532  2223333445788889999999999999999  78889999999999999999999


Q ss_pred             H--HHHhcCCCCHHHHHHHHHHHHH
Q psy16588        315 K--KSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       315 ~--~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      +  ++++..|++.... .++.+...
T Consensus       359 e~a~a~~~~p~~~~~~-~La~ll~~  382 (409)
T TIGR00540       359 KNVAACKEQLDANDLA-MAADAFDQ  382 (409)
T ss_pred             HHhHHhhcCCCHHHHH-HHHHHHHH
Confidence            9  5777888876644 55655543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.81  E-value=2.8e-18  Score=128.43  Aligned_cols=129  Identities=11%  Similarity=0.007  Sum_probs=96.6

Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                      ..+|+++++++|++     ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.+
T Consensus        13 ~~~~~~al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34577777776553     4456777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16588        287 SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY  340 (341)
Q Consensus       287 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  340 (341)
                      +|+++.+++++|.++...|++++|+..|++++.+.|+++..+..++.+...++.
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777776666543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.80  E-value=1.1e-17  Score=137.06  Aligned_cols=162  Identities=10%  Similarity=0.052  Sum_probs=132.4

Q ss_pred             hcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhc--------CChHHHHHHH
Q psy16588        108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCME---AIACIGVNHFYN--------DQPEVALLFY  176 (341)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~la~~~~~~--------~~~~~A~~~~  176 (341)
                      .+...|+++....+++.+|.++...|++++|+..|+++++.+|++..   +++.+|.++...        |++++|++.|
T Consensus        59 ~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        59 LESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            34568888877778999999999999999999999999999998765   689999999876        7899999999


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16588        177 RRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH  256 (341)
Q Consensus       177 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  256 (341)
                      ++++..+|++...+..+..+....+                 ..  ......+|.+++..|++.+|+..|+++++..|+.
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~-----------------~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRN-----------------RL--AGKELYVARFYLKRGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHH-----------------HH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence            9999999998766543332211100                 11  2334578888999999999999999999987654


Q ss_pred             ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16588        257 ---GLSQNNLAVLEAREGHIERASTYLQAAAASSP  288 (341)
Q Consensus       257 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  288 (341)
                         +.+++.+|.++...|++++|..+++......|
T Consensus       200 ~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       200 PATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence               57899999999999999999998888776555

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.80  E-value=5.2e-17  Score=130.20  Aligned_cols=204  Identities=16%  Similarity=0.221  Sum_probs=118.6

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT-----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA  194 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  194 (341)
                      ...+.||.+|.+.|+.+.|+.+-+..++. |+     ...+...||.-|+..|-++.|+..|........--..+...|.
T Consensus        70 e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl  148 (389)
T COG2956          70 EAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLL  148 (389)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence            45555555555555555555555544432 22     1234455555555555555565555555544444445555666


Q ss_pred             HHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16588        195 LCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG  271 (341)
Q Consensus       195 ~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  271 (341)
                      .+|....+|++|++.-++..++.+..   ..+..+..++..+....+++.|+..+.++++.+|.+..+-..+|.++...|
T Consensus       149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g  228 (389)
T COG2956         149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKG  228 (389)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc
Confidence            66666666666666666666655554   234455556666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        272 HIERASTYLQAAAASSPYLY-ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       272 ~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      +|+.|++.++.+++.+|+.. .+...|..||.++|+.++...++.++.+..+..
T Consensus       229 ~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         229 DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            66666666666666665543 355556666666666666666666666655543

>KOG0548|consensus

Probab=99.80  E-value=2e-17  Score=140.96  Aligned_cols=217  Identities=12%  Similarity=0.112  Sum_probs=189.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-------HHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-------ELFNN  192 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~  192 (341)
                      ...-.+|...+...++..|++.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++..-...       .....
T Consensus       225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r  303 (539)
T KOG0548|consen  225 HKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR  303 (539)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            445678899999999999999999999999 8888899999999999999999888888877654322       23445


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhhcccc------------------------chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16588        193 LALCCFYSQQYDMVVTCFERALSLALNE------------------------NAADVWYNISHVAIGISDTRLAIQCLHL  248 (341)
Q Consensus       193 la~~~~~~~~~~~A~~~~~~al~~~~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (341)
                      +|..|...++++.++.+|.+++.-....                        ....--..-|..++..|+|..|+..|.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            6778888899999999999988753221                        0023345568999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        249 ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       249 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  328 (341)
                      +++.+|+++..|.+.+.+|.++|.+..|+...+.+++++|++...|...|.++..+.+|++|.+.|.++++++|++.++.
T Consensus       384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q psy16588        329 DILRKLEQY  337 (341)
Q Consensus       329 ~~l~~~~~~  337 (341)
                      ..+.++.+.
T Consensus       464 ~~~~rc~~a  472 (539)
T KOG0548|consen  464 DGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHH
Confidence            888887664

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.79  E-value=1.9e-16  Score=139.26  Aligned_cols=212  Identities=10%  Similarity=-0.013  Sum_probs=166.9

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEA-IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ..++..+....+.|+++.|..+|.++.+.+|++... ....+.++...|+++.|+..+++..+..|+++.++..++.+|.
T Consensus       119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~  198 (398)
T PRK10747        119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI  198 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            344555667689999999999999999988887543 3445889999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhc------------------------------------------cccchHHHHHHHHHHHHhc
Q psy16588        199 YSQQYDMVVTCFERALSLA------------------------------------------LNENAADVWYNISHVAIGI  236 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~------------------------------------------~~~~~~~~~~~la~~~~~~  236 (341)
                      ..|++++|++.+.+..+..                                          |++  +.++..++..+...
T Consensus       199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~--~~~~~~~A~~l~~~  276 (398)
T PRK10747        199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ--VALQVAMAEHLIEC  276 (398)
T ss_pred             HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC--HHHHHHHHHHHHHC
Confidence            9999999987666655331                                          222  55667778888999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        237 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       237 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      |+.++|.+.++++++. +.++.....++.+  ..++.+++++.+++.++.+|+++..+..+|.++...+++++|..+|++
T Consensus       277 g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        277 DDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999999984 4455444434433  448889999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHH
Q psy16588        317 SLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       317 al~~~p~~~~~~~~l~~~~~~  337 (341)
                      +++..|++.. +..++.+...
T Consensus       354 al~~~P~~~~-~~~La~~~~~  373 (398)
T PRK10747        354 ALKQRPDAYD-YAWLADALDR  373 (398)
T ss_pred             HHhcCCCHHH-HHHHHHHHHH
Confidence            9999988755 2345555443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.78  E-value=9.4e-18  Score=125.59  Aligned_cols=122  Identities=15%  Similarity=0.024  Sum_probs=61.8

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16588        175 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS  254 (341)
Q Consensus       175 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  254 (341)
                      +|+++++.+|++   ++.+|.++...|++++|+.+|++++..+|.+  ..+|..+|.++...|++++|+..|+++++++|
T Consensus        15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            444444444443   3334455555555555555555555555555  55555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16588        255 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  301 (341)
Q Consensus       255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  301 (341)
                      +++.+++++|.++...|++++|+..|++++.+.|+++..+.+++.+.
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            55555555555555555555555555555555555555444444443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.78  E-value=3.2e-16  Score=125.74  Aligned_cols=212  Identities=14%  Similarity=0.092  Sum_probs=188.1

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHc
Q psy16588        126 AKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-----AELFNNLALCCFYS  200 (341)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~  200 (341)
                      |.-+.-.++.++|+..|..+++.+|...++...||..|...|+.+.|+..-+..+. .|+.     ..+...||.-|+..
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~a  120 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAA  120 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHh
Confidence            56667788999999999999999999999999999999999999999999766654 4443     34788999999999


Q ss_pred             CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhCCHHH
Q psy16588        201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-----GLSQNNLAVLEAREGHIER  275 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~  275 (341)
                      |-++.|...|....+...--  ..+...+..+|....+|++|++..++..++.++.     +..++.++..+....+.+.
T Consensus       121 Gl~DRAE~~f~~L~de~efa--~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~  198 (389)
T COG2956         121 GLLDRAEDIFNQLVDEGEFA--EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR  198 (389)
T ss_pred             hhhhHHHHHHHHHhcchhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence            99999999999998765444  7889999999999999999999999999988765     5688999999999999999


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhc
Q psy16588        276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH-SYSWDILRKLEQYFSY  340 (341)
Q Consensus       276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~  340 (341)
                      |+..++++++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+. +++...+..++.++++
T Consensus       199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~  264 (389)
T COG2956         199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK  264 (389)
T ss_pred             HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999988 5666777777666553

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.78  E-value=8.2e-17  Score=126.93  Aligned_cols=122  Identities=17%  Similarity=0.196  Sum_probs=59.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHH-HhcCC--HHHH
Q psy16588        166 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA-IGISD--TRLA  242 (341)
Q Consensus       166 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~-~~~g~--~~~A  242 (341)
                      .++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++++.|++  ..++..+|.++ ...|+  +++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCcHHH
Confidence            3444444444555555555555555555555555555555555555555555444  44444444432 33343  2444


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                      ...++++++.+|++..+++.+|..+...|++++|+.+|+++++..|.
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            44455554444444444444444444444444444444444444443

>KOG4162|consensus

Probab=99.77  E-value=1.3e-16  Score=141.22  Aligned_cols=215  Identities=19%  Similarity=0.140  Sum_probs=180.0

Q ss_pred             hhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q psy16588        107 ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR-DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY  185 (341)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  185 (341)
                      .+++.+|.||   ...+.++..|..+++.+.|..+.+++++. ..+++.+|..++.++...+++.+|+...+.++.-.|+
T Consensus       469 ~av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~  545 (799)
T KOG4162|consen  469 EAVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD  545 (799)
T ss_pred             HHHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence            3556688999   77889999999999999999999999999 5568899999999999999999999998888776555


Q ss_pred             cHHH----------------------------------------------------------------------------
Q psy16588        186 NAEL----------------------------------------------------------------------------  189 (341)
Q Consensus       186 ~~~~----------------------------------------------------------------------------  189 (341)
                      |...                                                                            
T Consensus       546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~  625 (799)
T KOG4162|consen  546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK  625 (799)
T ss_pred             hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence            2111                                                                            


Q ss_pred             ---------------------------HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHH
Q psy16588        190 ---------------------------FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA  242 (341)
Q Consensus       190 ---------------------------~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A  242 (341)
                                                 |...+..+...++.++|..++.++-.+.|..  +..|+..|.++...|++.+|
T Consensus       626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~~~~~~~~EA  703 (799)
T KOG4162|consen  626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLLEVKGQLEEA  703 (799)
T ss_pred             hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHHHHHHhhHHH
Confidence                                       4456667777777788888888888888877  88888888888888888888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST--YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      .+.|..++.++|++......+|.++.+.|+..-|..  .+..+++++|.+.++|+.+|.++.+.|+.++|.++|..++++
T Consensus       704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            888888888888888888888888888888777777  888888888888888888888888888888888888888888


Q ss_pred             CCCCHH
Q psy16588        321 HPGHSY  326 (341)
Q Consensus       321 ~p~~~~  326 (341)
                      .+.+|.
T Consensus       784 e~S~PV  789 (799)
T KOG4162|consen  784 EESNPV  789 (799)
T ss_pred             ccCCCc
Confidence            877754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.77  E-value=2.3e-16  Score=137.62  Aligned_cols=202  Identities=10%  Similarity=0.020  Sum_probs=171.2

Q ss_pred             hhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16588        118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLA  194 (341)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  194 (341)
                      ...++..+|..+...|+.+++...+.++....+.+   .+..+..+.++...|++++|...+++++..+|.+..++.. +
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~   83 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-H   83 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence            34889999999999999999999999988877644   5667788999999999999999999999999999987775 5


Q ss_pred             HHHHHcCChh----HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        195 LCCFYSQQYD----MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       195 ~~~~~~~~~~----~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                      ..+...|++.    .+...+.......|..  ...+..+|.++...|++++|+..++++++.+|++..++..+|.++...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~  161 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence            5555555444    4444444433455555  778889999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        271 GHIERASTYLQAAAASSPYLYE----THYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       271 g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      |++++|+.++++++...|.+..    .+..++.++...|++++|+..|++++...|
T Consensus       162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            9999999999999998774432    466899999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840|consensus

Probab=99.77  E-value=1.2e-16  Score=140.45  Aligned_cols=207  Identities=18%  Similarity=0.184  Sum_probs=174.0

Q ss_pred             CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--
Q psy16588        114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRD--------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--  183 (341)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--  183 (341)
                      .++.+......+|.+|...+++.+|+.+|++++.+.        |.-+.++.+||..|...|++++|..++++++++.  
T Consensus       236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            455554445569999999999999999999999753        3345678899999999999999999999998763  


Q ss_pred             ------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcc-----cc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        184 ------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL-----NE-NAADVWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       184 ------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-----~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                            |.-...+.+++.++...+++++|..++++++++.-     .+ .....+.++|.+|..+|++++|.++|++++.
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                  33455688899999999999999999999998742     22 3477899999999999999999999999998


Q ss_pred             cC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        252 ID--------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS-------PYLYETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       252 ~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      +.        +.....+.++|..|.+.+++.+|...|.+++.+.       |+....+.+|+.+|..+|++++|+++.++
T Consensus       396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~  475 (508)
T KOG1840|consen  396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK  475 (508)
T ss_pred             HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            64        2335678899999999999999999999998753       34445889999999999999999999999


Q ss_pred             HHhc
Q psy16588        317 SLDL  320 (341)
Q Consensus       317 al~~  320 (341)
                      ++..
T Consensus       476 ~~~~  479 (508)
T KOG1840|consen  476 VLNA  479 (508)
T ss_pred             HHHH
Confidence            9843

>KOG2003|consensus

Probab=99.76  E-value=9.6e-17  Score=134.39  Aligned_cols=213  Identities=21%  Similarity=0.134  Sum_probs=189.9

Q ss_pred             hhcHHHHHHH--cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        122 RLNLAKIFEG--LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       122 ~~~l~~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      -.+|..+++.  -.++..|..+...++..+.-++.++.+.|.+-+..|++++|.+.|++++..+....++++++|..+..
T Consensus       457 a~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~  536 (840)
T KOG2003|consen  457 ANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA  536 (840)
T ss_pred             hhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH
Confidence            3344444444  34677788888888888888888899999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      +|+.++|+++|-+.-.+--++  ..+++.++.+|..+.+..+|++++.++..+-|+++.++..||.+|-+.|+..+|.++
T Consensus       537 ~~~ldeald~f~klh~il~nn--~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~  614 (840)
T KOG2003|consen  537 LGNLDEALDCFLKLHAILLNN--AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC  614 (840)
T ss_pred             hcCHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence            999999999999988887778  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      +-......|.+.++.-.|+..|....-.++|+.+|+++--+.|+.......++.|-+
T Consensus       615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r  671 (840)
T KOG2003|consen  615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR  671 (840)
T ss_pred             hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988776666666544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.76  E-value=3.3e-16  Score=122.73  Aligned_cols=181  Identities=17%  Similarity=0.174  Sum_probs=167.9

Q ss_pred             chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16588        135 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  214 (341)
Q Consensus       135 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  214 (341)
                      ...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|+|.+|+..++++.
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~  127 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA  127 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            334666666777789999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHH
Q psy16588        215 SLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH  294 (341)
Q Consensus       215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  294 (341)
                      .+.|++  .++|..+|.+|.+.|++++|...|.+++++.|.++.+..|+|..+.-.|+++.|..++..+....+.+..+.
T Consensus       128 ~l~p~d--~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~  205 (257)
T COG5010         128 RLAPTD--WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVR  205 (257)
T ss_pred             ccCCCC--hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHH
Confidence            999999  999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        295 YNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       295 ~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                      .+++.+...+|++++|.+...+-+
T Consensus       206 ~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         206 QNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHHHhhcCChHHHHhhccccc
Confidence            999999999999999987765543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.75  E-value=7.9e-16  Score=144.22  Aligned_cols=201  Identities=10%  Similarity=0.006  Sum_probs=176.6

Q ss_pred             CCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16588        112 QPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFN  191 (341)
Q Consensus       112 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  191 (341)
                      .|..+   ...+..+.+..++|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|.......
T Consensus        30 ~p~~~---~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll  106 (822)
T PRK14574         30 NPAMA---DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA  106 (822)
T ss_pred             Cccch---hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence            45555   678888999999999999999999999999998655558888999999999999999999944455556666


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16588        192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG  271 (341)
Q Consensus       192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  271 (341)
                      .+|.++...|++++|++.|+++++.+|++  +.++..++.++...++.++|++.++++...+|.+... ..++.++...+
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~dP~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~  183 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKDPTN--PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD  183 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence            66889999999999999999999999999  9999999999999999999999999999999985554 55666666678


Q ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                      +..+|+..|+++++.+|++..++..+..++...|-...|.+..++--
T Consensus       184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p  230 (822)
T PRK14574        184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP  230 (822)
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence            88789999999999999999999999999999999998887776533

>TIGR00540 hemY_coli hemY protein

Probab=99.75  E-value=9.3e-16  Score=135.59  Aligned_cols=196  Identities=13%  Similarity=0.017  Sum_probs=168.4

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------------------
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-------------------  182 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------  182 (341)
                      ....+.++...|+++.|...++.+++..|+++.++..++.++...|++++|++.+.+..+.                   
T Consensus       156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~  235 (409)
T TIGR00540       156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL  235 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            4445788999999999999999999999999999999999999999999888887776543                   


Q ss_pred             -------------------CC----CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHH--HHHHHHHHHhcC
Q psy16588        183 -------------------GL----YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV--WYNISHVAIGIS  237 (341)
Q Consensus       183 -------------------~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~la~~~~~~g  237 (341)
                                         .|    +++..+..++..+...|++++|.+.++++++..|++  ...  ...........+
T Consensus       236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~--~~~~~~~l~~~~~l~~~  313 (409)
T TIGR00540       236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD--RAISLPLCLPIPRLKPE  313 (409)
T ss_pred             HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc--ccchhHHHHHhhhcCCC
Confidence                               22    355667888899999999999999999999999998  432  123333344568


Q ss_pred             CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Q psy16588        238 DTRLAIQCLHLALSIDSSHG--LSQNNLAVLEAREGHIERASTYLQ--AAAASSPYLYETHYNQAVISNLAGDLQESYNI  313 (341)
Q Consensus       238 ~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  313 (341)
                      +.+.+++.++++++..|+++  ..+..+|.++.+.|++++|.++|+  .+++..|++.. +..+|.++.+.|+.++|.++
T Consensus       314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence            89999999999999999999  889999999999999999999999  67888887665 55999999999999999999


Q ss_pred             HHHHHhc
Q psy16588        314 VKKSLDL  320 (341)
Q Consensus       314 ~~~al~~  320 (341)
                      |++++..
T Consensus       393 ~~~~l~~  399 (409)
T TIGR00540       393 RQDSLGL  399 (409)
T ss_pred             HHHHHHH
Confidence            9998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3060|consensus

Probab=99.75  E-value=2.9e-15  Score=116.45  Aligned_cols=204  Identities=13%  Similarity=0.037  Sum_probs=152.1

Q ss_pred             CCchHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16588        133 NNMPMSVKYYKLILKRD------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV  206 (341)
Q Consensus       133 g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  206 (341)
                      .+.++-+++....+...      ++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence            34455555555554432      222333445555666778888888888887777788888888888888888888888


Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                      +++|+..++-+|.+  ..++.....+...+|+.-+|++.+.+.++.++.+.++|..++.+|...|+|++|..+|++.+-+
T Consensus       106 ~e~y~~lL~ddpt~--~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  106 IEYYESLLEDDPTD--TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHhccCcch--hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            88888888888887  7777777777777788888888888888888888888888888888888888888888888888


Q ss_pred             CCCchhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        287 SPYLYETHYNQAVISNLAG---DLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       287 ~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      .|.++..+..+|.+++-+|   +++-|.++|.++++++|.+..+++.+-.+..++
T Consensus       184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL  238 (289)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence            8888888888888877765   556778888888888887777777666655544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.75  E-value=9.4e-16  Score=134.89  Aligned_cols=192  Identities=13%  Similarity=0.031  Sum_probs=167.5

Q ss_pred             cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------------------
Q psy16588        124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM---------------------  182 (341)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------  182 (341)
                      ..+.++...|++++|+..++++.+.+|+++.++..++.+|...|++++|++.+.+..+.                     
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~  237 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD  237 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999666655432                     


Q ss_pred             ---------------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHH
Q psy16588        183 ---------------------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL  241 (341)
Q Consensus       183 ---------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~  241 (341)
                                           .|+++.+...++..+...|+.++|...++++++..+ +  ......++.+  ..++.++
T Consensus       238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~--~~l~~l~~~l--~~~~~~~  312 (398)
T PRK10747        238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-D--ERLVLLIPRL--KTNNPEQ  312 (398)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-C--HHHHHHHhhc--cCCChHH
Confidence                                 234566677889999999999999999999999544 4  5444444443  4499999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       242 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                      +++.+++.++..|+++..+..+|.++...+++++|..+|+++++..|++. .+..++.++.++|+.++|..+|++++.+.
T Consensus       313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999864 46689999999999999999999998764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.74  E-value=5.3e-16  Score=122.32  Aligned_cols=134  Identities=13%  Similarity=0.141  Sum_probs=121.4

Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhCC--HHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE-AREGH--IERA  276 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~--~~~A  276 (341)
                      .++.++++..++++++.+|++  ...|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~--~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQN--SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            677899999999999999999  999999999999999999999999999999999999999999975 67787  5999


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      ...++++++.+|++..+++.+|.++...|++++|+.+|++++++.|.+..-...+..+.
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~  188 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESIN  188 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887765444444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.74  E-value=2.5e-16  Score=117.46  Aligned_cols=131  Identities=13%  Similarity=0.070  Sum_probs=116.1

Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      +.+++++..+|++  ....+.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+
T Consensus         4 ~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQ--LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhh--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4678888888888  88888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16588        288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY  340 (341)
Q Consensus       288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  340 (341)
                      |++...++.+|.++...|++++|+..|+++++++|++.........+...++.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  134 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLES  134 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998888777777776654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0550|consensus

Probab=99.73  E-value=8.5e-17  Score=132.95  Aligned_cols=215  Identities=19%  Similarity=0.185  Sum_probs=175.6

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHH-----H-------h------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLIL-----K-------R------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  181 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l-----~-------~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  181 (341)
                      ..+...+.++...++..+|...++..-     .       .      .|....+....+.|+...|++++|...--..++
T Consensus       118 k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk  197 (486)
T KOG0550|consen  118 KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK  197 (486)
T ss_pred             ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence            445555666666666666665554211     0       0      011223344667788888999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        182 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----------NAADVWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       182 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                      +++.+.++++..|.+++..++.+.|+.+|++++.++|+.          .....|..-|+-.++.|++.+|.++|.++|.
T Consensus       198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            999999999999999999999999999999999999887          1234567788889999999999999999999


Q ss_pred             cCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16588        252 IDSSH----GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS  327 (341)
Q Consensus       252 ~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  327 (341)
                      ++|++    +..|.+.+.+..++|+..+|+...+.++.+++....++...|.|+..++++++|++.|+++++...+ .+.
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~  356 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEI  356 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cch
Confidence            99986    5678999999999999999999999999999999999999999999999999999999999998877 444


Q ss_pred             HHHHHHHH
Q psy16588        328 WDILRKLE  335 (341)
Q Consensus       328 ~~~l~~~~  335 (341)
                      ...+.+..
T Consensus       357 r~~l~~A~  364 (486)
T KOG0550|consen  357 RRTLREAQ  364 (486)
T ss_pred             HHHHHHHH
Confidence            44444433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.73  E-value=4.8e-15  Score=136.58  Aligned_cols=147  Identities=11%  Similarity=-0.034  Sum_probs=101.0

Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16588        176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS  255 (341)
Q Consensus       176 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  255 (341)
                      ........|.+.+++.+||.+....|.+++|..+++.++++.|++  ..++.+++.++.+.+++++|+..+++++..+|+
T Consensus        75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~  152 (694)
T PRK15179         75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS  152 (694)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence            333344566666777777777777777777777777777777776  677777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        256 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      ++..++.+|.++.+.|++++|+..|++++..+|++..++..+|.++...|+.++|...|+++++...+-
T Consensus       153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            777777777777777777777777777776666666677777777777777777777777776665443

>KOG0548|consensus

Probab=99.72  E-value=2.9e-15  Score=128.02  Aligned_cols=147  Identities=17%  Similarity=0.171  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHH-----------------------------------
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI-----------------------------------  234 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~-----------------------------------  234 (341)
                      ...+|...+...++..|+++|.++++++ .+  ...+.+.+.+|+                                   
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~--it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA-TD--ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hh--hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4566777777778888888888888876 44  343433333333                                   


Q ss_pred             ------hcCCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16588        235 ------GISDTRLAIQCLHLALSID--------------------------SSHGLSQNNLAVLEAREGHIERASTYLQA  282 (341)
Q Consensus       235 ------~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  282 (341)
                            ..++++.|+.+|++++...                          |.-..--...|..++..|+|..|+..|.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence                  3456666777777766432                          11222334568888999999999999999


Q ss_pred             HHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       283 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      ++..+|++...+.+.+.||.++|.+..|+...+++++++|++..++...+.+...++
T Consensus       384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK  440 (539)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888777766544

>KOG0495|consensus

Probab=99.72  E-value=3.4e-15  Score=130.18  Aligned_cols=216  Identities=16%  Similarity=0.135  Sum_probs=186.5

Q ss_pred             hcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH
Q psy16588        108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA  187 (341)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  187 (341)
                      ++...|..+   ..|+-.+..+...|+...|..++.++++.+|++.++|+....+.+...+++.|..+|.++....| ..
T Consensus       576 av~~~pkae---~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-Te  651 (913)
T KOG0495|consen  576 AVEQCPKAE---ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TE  651 (913)
T ss_pred             HHHhCCcch---hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cc
Confidence            444556555   56777777888888888888888888888888888888888888888888888888888887655 56


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      .+|+.-+.+...+++.++|+.+++++++..|..  ...|..+|+++.++++.+.|.+.|...++..|.....|..++.+-
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f--~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle  729 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDF--HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE  729 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch--HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence            778888888888899999999999999999988  899999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWD  329 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  329 (341)
                      .+.|..-.|...++++.-.+|++...|......-.+.|+.+.|.....++++-.|++...|.
T Consensus       730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa  791 (913)
T KOG0495|consen  730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA  791 (913)
T ss_pred             HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence            89999999999999999999999999988888899999999999999999999998877664

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.72  E-value=2.4e-15  Score=141.05  Aligned_cols=192  Identities=8%  Similarity=-0.001  Sum_probs=166.3

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc
Q psy16588        142 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN  221 (341)
Q Consensus       142 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  221 (341)
                      +--..-..|..+...+..+.+..+.|+++.|+..|+++++.+|.++.....+..++...|+.++|+.++++++.-.+.. 
T Consensus        23 ~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~-  101 (822)
T PRK14574         23 FISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS-  101 (822)
T ss_pred             HHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-
Confidence            3334456788999999999999999999999999999999999996444488889999999999999999999444444 


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16588        222 AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  301 (341)
Q Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  301 (341)
                       ......+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++
T Consensus       102 -~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        102 -SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence             66666678899999999999999999999999999999999999999999999999999999999986554 5667777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        302 NLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       302 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      ...++..+|+..++++++.+|++.++...+.....
T Consensus       180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~  214 (822)
T PRK14574        180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ  214 (822)
T ss_pred             HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            67888878999999999999999998766655543

>KOG0550|consensus

Probab=99.71  E-value=2.7e-16  Score=130.06  Aligned_cols=149  Identities=16%  Similarity=0.099  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH------------
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------------  257 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------  257 (341)
                      ...-+.|+...|++++|...--..+++++.+  .++++..|.+++..++.+.|+.+|+++++++|++.            
T Consensus       172 ~~lka~cl~~~~~~~~a~~ea~~ilkld~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~l  249 (486)
T KOG0550|consen  172 KLLKAECLAFLGDYDEAQSEAIDILKLDATN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKL  249 (486)
T ss_pred             HHhhhhhhhhcccchhHHHHHHHHHhcccch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHH
Confidence            3445677888889999999888999999999  99999999999999999999999999999999874            


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE----THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      ..+..-|.-.++.|+|.+|.+.|.++|.++|++..    .|.+.+.+...+|+..+|+...+.++.++|....++...+.
T Consensus       250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~  329 (486)
T KOG0550|consen  250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN  329 (486)
T ss_pred             HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence            35667788899999999999999999999998764    68889999999999999999999999999999999988888


Q ss_pred             HHHHhhc
Q psy16588        334 LEQYFSY  340 (341)
Q Consensus       334 ~~~~~~~  340 (341)
                      +...++.
T Consensus       330 c~l~le~  336 (486)
T KOG0550|consen  330 CHLALEK  336 (486)
T ss_pred             HHHHHHH
Confidence            8877653

>KOG0495|consensus

Probab=99.70  E-value=1.6e-14  Score=126.11  Aligned_cols=216  Identities=15%  Similarity=0.070  Sum_probs=160.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..|++-+..+...+-++-|+..|..+++.+|.....|...+..-...|..++-..++++++...|.....|...+..+..
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~  596 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK  596 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence            56777778888888888888888888888888888888877777777888888888888888888888888888888888


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|+...|..++.++++.+|++  .++|+....+.....+++.|..+|.++....|. ..+|..-+.+...+++.++|+..
T Consensus       597 agdv~~ar~il~~af~~~pns--eeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEANPNS--EEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             cCCcHHHHHHHHHHHHhCCCc--HHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHH
Confidence            888888888888888888877  777777666666666777777777766665443 45666666666666667777777


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      ++++++..|+....|..+|.++.++++.+.|...|...+..-|+....|..++++...-
T Consensus       674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            77777766666666667777777777777777777666666676666666666665543

>KOG0553|consensus

Probab=99.70  E-value=5.5e-16  Score=123.73  Aligned_cols=117  Identities=20%  Similarity=0.170  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      ++-+..-|.-+++.++|.+|+..|.+||+++|.++..|++.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            44455566666677777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       303 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .+|++++|+..|+++++++|++...+..|......+.
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence            7777777777777777777777777766666665543

>KOG4162|consensus

Probab=99.70  E-value=1.1e-14  Score=129.36  Aligned_cols=206  Identities=17%  Similarity=0.122  Sum_probs=185.9

Q ss_pred             chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16588        135 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYNAELFNNLALCCFYSQQYDMVVTCFERA  213 (341)
Q Consensus       135 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  213 (341)
                      ..+++..++++++.+|+|+.+.+.++.-|..+++.+.|+.+.+++++. ..+++.+|..++.++..++++.+|+.+.+.+
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a  539 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA  539 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999 5678899999999999999999999888777


Q ss_pred             Hhhccc--------------------------------------------------------------------------
Q psy16588        214 LSLALN--------------------------------------------------------------------------  219 (341)
Q Consensus       214 l~~~~~--------------------------------------------------------------------------  219 (341)
                      +.-.++                                                                          
T Consensus       540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l  619 (799)
T KOG4162|consen  540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL  619 (799)
T ss_pred             HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence            654111                                                                          


Q ss_pred             ------------------------c---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16588        220 ------------------------E---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH  272 (341)
Q Consensus       220 ------------------------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  272 (341)
                                              .   .....|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+
T Consensus       620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~  699 (799)
T KOG4162|consen  620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ  699 (799)
T ss_pred             HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence                                    1   1134566778888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16588        273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN--IVKKSLDLHPGHSYSWDILRKLEQYFSY  340 (341)
Q Consensus       273 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~  340 (341)
                      +++|.+.|..++.++|+++.+...+|.++.+.|+..-|..  .+..+++++|.+.++|+.++.+-+..+.
T Consensus       700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd  769 (799)
T KOG4162|consen  700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD  769 (799)
T ss_pred             hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999888888  9999999999999999999999877653

>KOG1174|consensus

Probab=99.68  E-value=1.4e-14  Score=120.02  Aligned_cols=221  Identities=10%  Similarity=0.010  Sum_probs=152.4

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  188 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  188 (341)
                      +...|.+++.+.-...++.++.....+.-+..++-.-....|++...+..+|.+++..|++++|+..|+++..++|....
T Consensus       188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~  267 (564)
T KOG1174|consen  188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE  267 (564)
T ss_pred             eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence            34456677665555555666665666666667777777888999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA  268 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  268 (341)
                      ..-..|.++...|+++.-.......+......  ..-|+.-+..++..+++..|+.+-++++..+|.+..++...|..+.
T Consensus       268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t--a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~  345 (564)
T KOG1174|consen  268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT--ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI  345 (564)
T ss_pred             hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc--hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH
Confidence            76666666666666666666666666665555  5566666666666666666666666666666666666666666666


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        269 REGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL  331 (341)
Q Consensus       269 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  331 (341)
                      ..|+.++|+-.|+.+..+.|...+.|..|..+|...|++.||...-..++...|++..+...+
T Consensus       346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            666666666666666666666666666666666666666555555555555555544444333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.68  E-value=6.9e-15  Score=135.52  Aligned_cols=154  Identities=14%  Similarity=-0.046  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16588        138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA  217 (341)
Q Consensus       138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  217 (341)
                      ++.-+.......|.+.+++.+||.+....|.+++|+..++.++++.|++..++..++.++.+.+++++|+..+++++..+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            33334444556788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16588        218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  293 (341)
Q Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  293 (341)
                      |++  ...++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...
T Consensus       151 p~~--~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        151 SSS--AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             CCC--HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            999  99999999999999999999999999999999999999999999999999999999999999887655444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.68  E-value=8.5e-15  Score=136.02  Aligned_cols=203  Identities=12%  Similarity=0.043  Sum_probs=171.7

Q ss_pred             CCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--------
Q psy16588        115 GPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN--------  186 (341)
Q Consensus       115 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------  186 (341)
                      +|....++..+...+...+++++++..++.+++.+|+....++.+|.++.+.++++++.-.  .++...+.+        
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence            3334488999999999999999999999999999999999999999999999887776655  555544444        


Q ss_pred             -----------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16588        187 -----------AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS  255 (341)
Q Consensus       187 -----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  255 (341)
                                 ..+++.+|.||-..|++++|...|+++++.+|++  +.+++++|..|... +.++|+.++.+++..   
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence                       3889999999999999999999999999999999  99999999999998 999999999999865   


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH--------HHH------------HHHHHcCCHHHHHHHHH
Q psy16588        256 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY--------NQA------------VISNLAGDLQESYNIVK  315 (341)
Q Consensus       256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~l~------------~~~~~~g~~~~A~~~~~  315 (341)
                                 +...++|.++..++.+.+..+|++.+.+.        .++            .+|...+++++++..++
T Consensus       179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK  247 (906)
T PRK14720        179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK  247 (906)
T ss_pred             -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence                       66667888888888888888887765321        223            66777888999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHH
Q psy16588        316 KSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       316 ~al~~~p~~~~~~~~l~~~~~  336 (341)
                      .+++++|+|..++..+..+.+
T Consensus       248 ~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        248 KILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHhcCCcchhhHHHHHHHHH
Confidence            999999999888888877765

>KOG3060|consensus

Probab=99.68  E-value=4.5e-14  Score=109.89  Aligned_cols=182  Identities=13%  Similarity=0.081  Sum_probs=165.5

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..+-.+..+....|+.+-|..++++.-...|....+....|..+...|++++|+++|+..++.+|.+...+...--+...
T Consensus        53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka  132 (289)
T KOG3060|consen   53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA  132 (289)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence            44445567778899999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---HIERA  276 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A  276 (341)
                      +|+--+|++.+..-++..+.+  .++|..++.+|...|+|++|.-+|++++-+.|.++..+..+|.+++-+|   +++-|
T Consensus       133 ~GK~l~aIk~ln~YL~~F~~D--~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a  210 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLDKFMND--QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA  210 (289)
T ss_pred             cCCcHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999999999999  9999999999999999999999999999999999999999999988776   56779


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16588        277 STYLQAAAASSPYLYETHYNQAVISNL  303 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~~~~l~~~~~~  303 (341)
                      .++|.++++++|.+..+++.+-.+...
T Consensus       211 rkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  211 RKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            999999999999888888776555433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.67  E-value=1.2e-14  Score=114.02  Aligned_cols=169  Identities=19%  Similarity=0.128  Sum_probs=159.0

Q ss_pred             ccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHH
Q psy16588        110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL  189 (341)
Q Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  189 (341)
                      ...|++.   .. .+++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++....|+++..
T Consensus        61 ~~~p~d~---~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~  136 (257)
T COG5010          61 LRNPEDL---SI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA  136 (257)
T ss_pred             hcCcchH---HH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence            3567776   44 7888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      |..+|.+|.+.|++++|...|.+++++.|..  +.+..|+|..+.-.|+++.|..++..+....+.+..+..+++.+...
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~  214 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL  214 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence            9999999999999999999999999999999  99999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHH
Q psy16588        270 EGHIERASTYLQAAA  284 (341)
Q Consensus       270 ~g~~~~A~~~~~~al  284 (341)
                      +|++++|.....+-+
T Consensus       215 ~g~~~~A~~i~~~e~  229 (257)
T COG5010         215 QGDFREAEDIAVQEL  229 (257)
T ss_pred             cCChHHHHhhccccc
Confidence            999999998876544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.66  E-value=1e-14  Score=107.13  Aligned_cols=123  Identities=11%  Similarity=-0.032  Sum_probs=93.1

Q ss_pred             Hhhc-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        214 LSLA-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       214 l~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      ..+. ++.  .+..+.+|..++..|++++|...|+-...++|.+...|++||.++..+|+|++|+..|.+++.++|+++.
T Consensus        27 ~~~~~~~~--l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~  104 (157)
T PRK15363         27 LDDDVTQP--LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ  104 (157)
T ss_pred             HCCChHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            3444 555  7777888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      .++++|.|+...|+.+.|.+.|+.++...-.++.-.....+....+
T Consensus       105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363        105 APWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            8888888888888888888888888877644444444444444443

>KOG1156|consensus

Probab=99.66  E-value=2e-14  Score=125.27  Aligned_cols=212  Identities=19%  Similarity=0.188  Sum_probs=162.6

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  201 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  201 (341)
                      .+.-+.-.+..++|...++..+.+++..|++++.+...|..+..+|+-++|..+...++..++.+..+|..+|.++....
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK   89 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK   89 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence            34444556677778888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16588        202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQ  281 (341)
Q Consensus       202 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  281 (341)
                      +|++|+++|+.|+.+.|++  ..+|..++....++++++.....-.+.++..|.....|..++..+...|++..|...++
T Consensus        90 ~Y~eaiKcy~nAl~~~~dN--~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~  167 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIEKDN--LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE  167 (700)
T ss_pred             hHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888887  77888888888888888877777777777777777777777777777777777777666


Q ss_pred             HHHHhC---CCc---------------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        282 AAAASS---PYL---------------------------------------YETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       282 ~al~~~---p~~---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ...+..   |+.                                       .......+.++.+++++++|...|...+.
T Consensus       168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~  247 (700)
T KOG1156|consen  168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE  247 (700)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence            654433   111                                       11223467888899999999999999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q psy16588        320 LHPGHSYSWDILRKLE  335 (341)
Q Consensus       320 ~~p~~~~~~~~l~~~~  335 (341)
                      .+|++...+..+..+.
T Consensus       248 rnPdn~~Yy~~l~~~l  263 (700)
T KOG1156|consen  248 RNPDNLDYYEGLEKAL  263 (700)
T ss_pred             hCchhHHHHHHHHHHH
Confidence            9999988776666554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.65  E-value=8.5e-15  Score=109.18  Aligned_cols=116  Identities=18%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16588        175 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS  254 (341)
Q Consensus       175 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  254 (341)
                      .|++++..+|++....+.+|..+...|++++|+..+++++..+|.+  ..++..+|.++...|++++|+..++++++.+|
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4455555555555555555555555555555555555555555555  55555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        255 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      .++..++.+|.++...|++++|+..|+++++.+|++..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            55555555555555555555555555555555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128|consensus

Probab=99.63  E-value=1.2e-14  Score=128.35  Aligned_cols=192  Identities=17%  Similarity=0.206  Sum_probs=154.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH-----------
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE-----------  188 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------  188 (341)
                      .....++..+...|-...|+.+|++.        ..|-....||...|+..+|..+..+-++ .|.++.           
T Consensus       399 q~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD  469 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC
Confidence            45555666666666666666666654        3344455555555555555555555555 222222           


Q ss_pred             -----------------HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        189 -----------------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       189 -----------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                                       +...+|......++|.++.++++..++++|-.  ...|+.+|.+..+.++++.|.+.|..++.
T Consensus       470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~q~av~aF~rcvt  547 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKEQAAVKAFHRCVT  547 (777)
T ss_pred             hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence                             33444555556789999999999999999999  99999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        252 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       252 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      ++|++...|++++..|.+.|+..+|...++++++.+-++..+|.|...+..+.|.+++|+..|.+.+.+.-
T Consensus       548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999988999999999999999999999999999887643

>KOG0553|consensus

Probab=99.63  E-value=8.9e-15  Score=116.91  Aligned_cols=113  Identities=18%  Similarity=0.119  Sum_probs=57.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16588        192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG  271 (341)
Q Consensus       192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  271 (341)
                      .-|.-++..++|.+|+..|.+||+++|.+  +..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..+|
T Consensus        86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n--AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   86 NEGNKLMKNKDYQEAVDKYTEAIELDPTN--AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            33444444455555555555555555555  5555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16588        272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGD  306 (341)
Q Consensus       272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  306 (341)
                      ++++|++.|+++++++|++...+.+|..+-.+.++
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            55555555555555555555444444444444433

>KOG1127|consensus

Probab=99.62  E-value=1.9e-14  Score=130.76  Aligned_cols=204  Identities=14%  Similarity=0.064  Sum_probs=185.0

Q ss_pred             cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q psy16588        132 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE  211 (341)
Q Consensus       132 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  211 (341)
                      ..+...|...|-++++.++..+.++..+|.+|....+...|.++|+++.++++.+..++-..+..|....+++.|....-
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            34578899999999999999999999999999998899999999999999999999999999999999999999999987


Q ss_pred             HHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16588        212 RALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  291 (341)
Q Consensus       212 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  291 (341)
                      .+-+..|.......|..+|..|.+.+++..|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence            77777766544566777999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      .+.+..+.....+|+|.+|+..+...+....+.......++.+.
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~  674 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV  674 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            99999999999999999999999999887666655555554443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.62  E-value=1.5e-13  Score=119.86  Aligned_cols=174  Identities=15%  Similarity=0.019  Sum_probs=148.2

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHH
Q psy16588        149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV  225 (341)
Q Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  225 (341)
                      +|+++.++..+|.++...|+.+.+...+.++....+.+   .+.....+.++...|++++|...++++++.+|.+  ..+
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a   79 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD--LLA   79 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHH
Confidence            78999999999999999999999999999988877644   5567788999999999999999999999999999  766


Q ss_pred             HHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16588        226 WYNISHVAIGISD----TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  301 (341)
Q Consensus       226 ~~~la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  301 (341)
                      +.. +..+...|+    ...+.+.+......+|.....+..+|.++...|++++|+..++++++++|++..++..+|.++
T Consensus        80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~  158 (355)
T cd05804          80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL  158 (355)
T ss_pred             HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            664 555544444    444444444433566777788889999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        302 NLAGDLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       302 ~~~g~~~~A~~~~~~al~~~p~~~  325 (341)
                      ...|++++|+.++++++...|.++
T Consensus       159 ~~~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         159 EMQGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             HHcCCHHHHHHHHHhhhhccCCCc
Confidence            999999999999999999987543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.57  E-value=2.9e-12  Score=108.98  Aligned_cols=153  Identities=17%  Similarity=0.097  Sum_probs=140.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHH
Q psy16588        150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  229 (341)
Q Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l  229 (341)
                      |....++|..+..++..|++++|+..++..+...|+++..+...+.++...++..+|.+.+++++.++|..  ...+.++
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~  380 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNL  380 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Q psy16588        230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE  309 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  309 (341)
                      |.++++.|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|..                 ..+..|...|++++
T Consensus       381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~  443 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQ  443 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHH
Confidence            9999999999999999999999999999999999999999998776544                 45666777889999


Q ss_pred             HHHHHHHHHhcC
Q psy16588        310 SYNIVKKSLDLH  321 (341)
Q Consensus       310 A~~~~~~al~~~  321 (341)
                      |+..+..+.+..
T Consensus       444 A~~~l~~A~~~~  455 (484)
T COG4783         444 AIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHHhc
Confidence            999998888776

>KOG1127|consensus

Probab=99.57  E-value=3.1e-14  Score=129.42  Aligned_cols=219  Identities=15%  Similarity=0.104  Sum_probs=187.5

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..|..+|..|...+++..|+..|+.++..+|.+.+.|..+|.+|...|.+..|++.|.++..++|.+....+..+.+...
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            44566788899999999999999999999999999999999999999999999999999999999998888888888888


Q ss_pred             cCChhHHHHHHHHHHhh---------------------------------------------------------------
Q psy16588        200 SQQYDMVVTCFERALSL---------------------------------------------------------------  216 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~---------------------------------------------------------------  216 (341)
                      .|+|.+|+..+...+..                                                               
T Consensus       643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda  722 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA  722 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence            88888888877766554                                                               


Q ss_pred             -----------------------------cccc-----------------chHHHHHHHHHHHHh--------cCCHHHH
Q psy16588        217 -----------------------------ALNE-----------------NAADVWYNISHVAIG--------ISDTRLA  242 (341)
Q Consensus       217 -----------------------------~~~~-----------------~~~~~~~~la~~~~~--------~g~~~~A  242 (341)
                                                   .+++                 .....|+++|..|+.        +.+...|
T Consensus       723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A  802 (1238)
T KOG1127|consen  723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA  802 (1238)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence                                         0111                 012357888877765        2344579


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      +.+++++++++.++...|+.||.+ ...|.+.-|..+|-+.+...|.....|.|+|.++.+..+++-|...|.++..++|
T Consensus       803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP  881 (1238)
T KOG1127|consen  803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP  881 (1238)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence            999999999999999999999988 6679999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q psy16588        323 GHSYSWDILRKLEQYFS  339 (341)
Q Consensus       323 ~~~~~~~~l~~~~~~~~  339 (341)
                      .+...|...+.+.....
T Consensus       882 ~nl~~WlG~Ali~eavG  898 (1238)
T KOG1127|consen  882 LNLVQWLGEALIPEAVG  898 (1238)
T ss_pred             hhhHHHHHHHHhHHHHH
Confidence            99999988887766543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.57  E-value=6.7e-12  Score=112.01  Aligned_cols=198  Identities=12%  Similarity=0.009  Sum_probs=141.6

Q ss_pred             hcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-
Q psy16588        123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ-  201 (341)
Q Consensus       123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-  201 (341)
                      +-...++...|++++|+++++.....-.+........|.++..+|++++|...|+..+..+|++...+..+..+..... 
T Consensus         8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen    8 LYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence            3345677778888888888877777777777777788888888888888888888888888888777777776663222 


Q ss_pred             ----ChhHHHHHHHHHHhhcc-----------------------------------------------------------
Q psy16588        202 ----QYDMVVTCFERALSLAL-----------------------------------------------------------  218 (341)
Q Consensus       202 ----~~~~A~~~~~~al~~~~-----------------------------------------------------------  218 (341)
                          +.+.-..+|++.....|                                                           
T Consensus        88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~  167 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE  167 (517)
T ss_pred             cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence                23334444444322200                                                           


Q ss_pred             ----------------------ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16588        219 ----------------------NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       219 ----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                                            ......+++.+++.|...|++++|+++.+++|+..|..++.+...|.++...|++.+|
T Consensus       168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A  247 (517)
T PF12569_consen  168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA  247 (517)
T ss_pred             HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence                                  0111235567788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      ...++.+-.++..+-.+....+..+.+.|+.++|...+.....-
T Consensus       248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence            88888888888877777777777888888888887777665443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.56  E-value=2.9e-13  Score=99.46  Aligned_cols=102  Identities=12%  Similarity=0.013  Sum_probs=51.3

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL  263 (341)
Q Consensus       184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  263 (341)
                      ++.-+..+.+|..++..|++++|...|+-+..++|.+  ...|+++|.++..+|+|.+|+..|.+++.++|+++..++++
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~--~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a  109 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS--FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA  109 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            3344444444555555555555555555555555554  55555555555555555555555555555555555555555


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        264 AVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      |.++...|+.+.|.+.|+.++...
T Consensus       110 g~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        110 AECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHh
Confidence            555555555555555555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.56  E-value=2e-13  Score=117.81  Aligned_cols=112  Identities=14%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                      ...|..++..|+|++|+.+|++++.++|.+  ..+++++|.++...|++++|+..+++++.++|.++.+++.+|.++..+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            344555556666666666666666666666  666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16588        271 GHIERASTYLQAAAASSPYLYETHYNQAVISNLA  304 (341)
Q Consensus       271 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  304 (341)
                      |++++|+..|++++.++|++..+...++.+....
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            6666666666666666666665555555554433

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.55  E-value=1.1e-11  Score=119.93  Aligned_cols=192  Identities=9%  Similarity=0.024  Sum_probs=105.4

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRD--ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM----GLYNAELFNNL  193 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l  193 (341)
                      ..|..+...|.+.|++++|+.+|+++....  | +...|..+...|.+.|++++|.+.|+++...    .| +...|..+
T Consensus       508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaL  585 (1060)
T PLN03218        508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGAL  585 (1060)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHH
Confidence            566667777888888888888887776543  3 4566777777777777777777777776542    23 34555666


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHh
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLAL-NENAADVWYNISHVAIGISDTRLAIQCLHLALSID--SSHGLSQNNLAVLEARE  270 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~  270 (341)
                      ...|.+.|++++|.++|+++.+.+. .+  ...|..+...|.+.|++++|+..|+++.+..  |+ ..+|..+...|.+.
T Consensus       586 I~ay~k~G~ldeA~elf~~M~e~gi~p~--~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~  662 (1060)
T PLN03218        586 MKACANAGQVDRAKEVYQMIHEYNIKGT--PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHA  662 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC
Confidence            6666666666666666666665542 22  4455555555555555555555555555431  22 33344444444444


Q ss_pred             CCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        271 GHIERASTYLQAAAASS-PYLYETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       271 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      |++++|.+.++++.+.. +.+..++..+...|.+.|++++|...|++
T Consensus       663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e  709 (1060)
T PLN03218        663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED  709 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            44444444444443322 11222333333344444444444444333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.55  E-value=3e-12  Score=108.92  Aligned_cols=153  Identities=17%  Similarity=0.074  Sum_probs=145.4

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL  263 (341)
Q Consensus       184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  263 (341)
                      |....+++..+..++..|++++|+..++..+...|++  +..+-..+.+++..|+.++|.+.+++++..+|+....+.++
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~  380 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL  380 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence            6778889999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      |.++.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+...+.-+...+...+...++..
T Consensus       381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999988888877777766654

>KOG1128|consensus

Probab=99.54  E-value=4.3e-13  Score=118.75  Aligned_cols=176  Identities=13%  Similarity=0.102  Sum_probs=146.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH
Q psy16588        149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN  228 (341)
Q Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  228 (341)
                      .|.....-..++..+...|-...|+..|++.        ..|-....||...|+..+|..+..+-++.+|+   +..|..
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d---~~lyc~  462 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD---PRLYCL  462 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc---chhHHH
Confidence            3445667778999999999999999999975        45667778888888888888888888884333   333333


Q ss_pred             H----------------------------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16588        229 I----------------------------SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL  280 (341)
Q Consensus       229 l----------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  280 (341)
                      +                            |......++|.++.++++..++++|-....|+.+|.+..+.++++.|.+.|
T Consensus       463 LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence            3                            333344689999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       281 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      ..++.++|++..+|.+++..|...++..+|...++++++.+-++...|.+...+.
T Consensus       543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvs  597 (777)
T KOG1128|consen  543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVS  597 (777)
T ss_pred             HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhh
Confidence            9999999999999999999999999999999999999999887777766554443

>KOG1130|consensus

Probab=99.53  E-value=6.7e-14  Score=116.14  Aligned_cols=201  Identities=16%  Similarity=0.141  Sum_probs=159.6

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCC--------------------hHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQ--------------------PEVAL  173 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~--------------------~~~A~  173 (341)
                      .+--+||..+.-.|.|++|+.++.+-+.....      ...++|++|.+|...|+                    ++.|.
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av  175 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV  175 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence            34456788899999999999998887765322      46789999999988765                    45566


Q ss_pred             HHHHHHHHcCCC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHH
Q psy16588        174 LFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAI  243 (341)
Q Consensus       174 ~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~  243 (341)
                      ++|..-+++...      ...++-+||+.|+..|+|+.|+..-+.-+.+....    ....++.++|.++.-.|+++.|+
T Consensus       176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~  255 (639)
T KOG1130|consen  176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI  255 (639)
T ss_pred             HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence            666665554332      23467899999999999999999988888776544    23468899999999999999999


Q ss_pred             HHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHcCCHHHHH
Q psy16588        244 QCLHLALSID------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY------LYETHYNQAVISNLAGDLQESY  311 (341)
Q Consensus       244 ~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~  311 (341)
                      ++|+..+.+.      ...+...+.+|..|....++++|+.++.+-+.+...      ...+++.||..+...|..++|+
T Consensus       256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl  335 (639)
T KOG1130|consen  256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL  335 (639)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence            9999987653      123567889999999999999999999998876532      2347888999999999999999


Q ss_pred             HHHHHHHhc
Q psy16588        312 NIVKKSLDL  320 (341)
Q Consensus       312 ~~~~~al~~  320 (341)
                      .+.++.+++
T Consensus       336 ~fae~hl~~  344 (639)
T KOG1130|consen  336 YFAELHLRS  344 (639)
T ss_pred             HHHHHHHHH
Confidence            998888765

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.52  E-value=3.2e-11  Score=116.69  Aligned_cols=195  Identities=11%  Similarity=0.048  Sum_probs=129.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKR----DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLA  194 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la  194 (341)
                      ..|..+...|.+.|++++|.++|.++...    .| +...+..+...|.+.|++++|++.|+++.+.+ +.+...|..+.
T Consensus       543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI  621 (1060)
T PLN03218        543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV  621 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence            55666777777888888888888877652    33 45667777777777788888888887777765 34566777777


Q ss_pred             HHHHHcCChhHHHHHHHHHHhhc--cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhC
Q psy16588        195 LCCFYSQQYDMVVTCFERALSLA--LNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREG  271 (341)
Q Consensus       195 ~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  271 (341)
                      ..|.+.|++++|+.+|+++.+..  |+   ...|..+...|.+.|++++|.++++++.+.. +.+..++..+...|.+.|
T Consensus       622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD---~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G  698 (1060)
T PLN03218        622 NSCSQKGDWDFALSIYDDMKKKGVKPD---EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK  698 (1060)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            77777777777777777776552  22   4556666666666677777777766666543 334556666666666666


Q ss_pred             CHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        272 HIERASTYLQAAAAS--SPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       272 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ++++|+..|++....  .| +...|..+...|.+.|++++|.+.|++...
T Consensus       699 ~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        699 NWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666666666665442  23 344566666666666666666666665543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.50  E-value=6.7e-12  Score=118.93  Aligned_cols=195  Identities=11%  Similarity=-0.023  Sum_probs=102.5

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRD-ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ..+..+...+.+.|++++|..++..+++.. +.+..++..+...|.+.|++++|.+.|++..+   .+...|+.+...|.
T Consensus       326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~  402 (697)
T PLN03081        326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYG  402 (697)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence            345555556666666666666666665543 33444555555556666666666666555432   23345555555555


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C---------------------
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID---S---------------------  254 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p---------------------  254 (341)
                      ..|+.++|++.|++..+..... ....+..+...+...|..++|.++|+.+.+..   |                     
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA  481 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA  481 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence            5555555555555554432111 03334444444445555555555555444321   1                     


Q ss_pred             ----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        255 ----------SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       255 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                                .+..+|..+...+...|+++.|...+++.+++.|++...|..++.+|.+.|++++|.+.+++..
T Consensus       482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                      1233455555555555555555555555555555555555556666666666666666655554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.49  E-value=1.2e-12  Score=113.01  Aligned_cols=113  Identities=14%  Similarity=0.180  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16588        156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG  235 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~  235 (341)
                      +...|..++..|++++|+.+|.++++.+|.+..+++.+|.++...|++++|+..+++++.++|.+  ..+++.+|.++..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~   82 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHH
Confidence            44556666777777777777777777777777777777777777777777777777777777777  7777777777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       236 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                      +|++++|+..|+++++++|++..+...++.+...+
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            77777777777777777777776666666554443

>KOG2376|consensus

Probab=99.49  E-value=6.8e-12  Score=108.76  Aligned_cols=194  Identities=17%  Similarity=0.110  Sum_probs=156.4

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV  206 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  206 (341)
                      ..+...|+|++|+....+++...|++..++.....++.+.++|++|+...+.-....-.+ ...+..+.|.++.++.++|
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dea   98 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEA   98 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHH
Confidence            456678999999999999999999999999999999999999999995555433221111 2226889999999999999


Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------------------------
Q psy16588        207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-------------------------------  255 (341)
Q Consensus       207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------------------------------  255 (341)
                      +..++   ..++.+  ..+....|++++++|+|++|+..|+..++.+.+                               
T Consensus        99 lk~~~---~~~~~~--~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~  173 (652)
T KOG2376|consen   99 LKTLK---GLDRLD--DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED  173 (652)
T ss_pred             HHHHh---cccccc--hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence            99998   345555  678888999999999999999999987654321                               


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCc--------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        256 HGLSQNNLAVLEAREGHIERASTYLQAAAASS-------PYL--------YETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      +.+.+++.+.++...|+|.+|++.++.++.+.       ..+        ..+...|+.++..+|+.++|...|...+..
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            34678899999999999999999999995432       111        126778999999999999999999999999


Q ss_pred             CCCCHH
Q psy16588        321 HPGHSY  326 (341)
Q Consensus       321 ~p~~~~  326 (341)
                      +|.+..
T Consensus       254 ~~~D~~  259 (652)
T KOG2376|consen  254 NPADEP  259 (652)
T ss_pred             cCCCch
Confidence            887753

>KOG1156|consensus

Probab=99.48  E-value=1.2e-11  Score=108.25  Aligned_cols=205  Identities=14%  Similarity=0.082  Sum_probs=141.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      .+|..+|.++....+|++|+++|+.|+.+.|+|..+|..++....++++++.....-.+.++..|..-..|...+..+..
T Consensus        76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L  155 (700)
T KOG1156|consen   76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL  155 (700)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            66777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCChhHHHHHHHHHHhhc---ccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16588        200 SQQYDMVVTCFERALSLA---LNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI  273 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~---~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  273 (341)
                      .|++..|....+...+..   |+.   ...........+....|.+++|++.+.+--...-+........+.++.+++++
T Consensus       156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l  235 (700)
T KOG1156|consen  156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL  235 (700)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence            777777766666555443   222   22344455556666667766666665554333333344555678899999999


Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCC
Q psy16588        274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESY-NIVKKSLDLHPGH  324 (341)
Q Consensus       274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~  324 (341)
                      ++|...|...+..+|++...+..+-.++.+-.+.-+++ ..|...-+..|.+
T Consensus       236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~  287 (700)
T KOG1156|consen  236 EEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH  287 (700)
T ss_pred             HhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence            99999999999999999998888888886444444555 5666555555544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.48  E-value=3.7e-12  Score=118.78  Aligned_cols=164  Identities=9%  Similarity=-0.053  Sum_probs=145.7

Q ss_pred             HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc-----
Q psy16588        147 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-----  221 (341)
Q Consensus       147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----  221 (341)
                      ..+|.+..++..+...+...+++++|+..++.+++..|+....++.+|.++...+++.++...  .++...+.+.     
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            346889999999999999999999999999999999999999999999999999988877666  5555544440     


Q ss_pred             ------------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        222 ------------AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       222 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                                  .-.+++.+|.||-++|++++|...|+++++.+|+++.+++++|..|... ++++|+.++.+++..   
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence                        0378999999999999999999999999999999999999999999999 999999999999876   


Q ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16588        290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS  327 (341)
Q Consensus       290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  327 (341)
                                 +...+++.++..++.+.+..+|++.+.
T Consensus       179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~  205 (906)
T PRK14720        179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDF  205 (906)
T ss_pred             -----------HHhhhcchHHHHHHHHHHhcCcccchH
Confidence                       666779999999999999999988665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.48  E-value=6e-12  Score=119.23  Aligned_cols=191  Identities=9%  Similarity=-0.025  Sum_probs=149.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRD-ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCC  197 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  197 (341)
                      ..|..+...|.+.|++++|+.+|++..... .-+...+..+...+...|++++|.+.+..+++.. +.+..++..+...|
T Consensus       291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y  370 (697)
T PLN03081        291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY  370 (697)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence            678889999999999999999999987653 2266788899999999999999999999999876 56778899999999


Q ss_pred             HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCHHHH
Q psy16588        198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      .+.|++++|...|++..+   .+  ...|+.+...|.+.|+.++|++.|+++.+.. ..+..++..+...+...|..++|
T Consensus       371 ~k~G~~~~A~~vf~~m~~---~d--~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a  445 (697)
T PLN03081        371 SKWGRMEDARNVFDRMPR---KN--LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG  445 (697)
T ss_pred             HHCCCHHHHHHHHHhCCC---CC--eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence            999999999999998764   24  6789999999999999999999999998753 22355666666777777777777


Q ss_pred             HHHHHHHHHhCCC--chhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16588        277 STYLQAAAASSPY--LYETHYNQAVISNLAGDLQESYNIVK  315 (341)
Q Consensus       277 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~  315 (341)
                      ..+|+...+..+-  +...|..+...|.+.|++++|.+.++
T Consensus       446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~  486 (697)
T PLN03081        446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR  486 (697)
T ss_pred             HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence            7777777643211  12244445555555555555544444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.48  E-value=3.4e-11  Score=98.09  Aligned_cols=165  Identities=9%  Similarity=0.003  Sum_probs=100.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL---FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWY  227 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~  227 (341)
                      .+..++..|..+...|++++|++.|++++...|..+.+   .+.+|.+++..+++++|+..+++.++..|++ ....+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            34444455555555555555555555555555544332   2455555555555555555555555555554 3344455


Q ss_pred             HHHHHHHhcC------------------CHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHhCC
Q psy16588        228 NISHVAIGIS------------------DTRLAIQCLHLALSIDSSHG-----------------LSQNNLAVLEAREGH  272 (341)
Q Consensus       228 ~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~g~  272 (341)
                      .+|.++...+                  ...+|+..|++.++..|++.                 .--...|..|.+.|.
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~  190 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA  190 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            5554432222                  12345555555555555542                 122356788999999


Q ss_pred             HHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        273 IERASTYLQAAAASSPYLY---ETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       273 ~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      |..|+.-++.+++..|+..   +++..++..|..+|..++|......
T Consensus       191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            9999999999999887654   4888899999999999998876653

>KOG1130|consensus

Probab=99.47  E-value=1.5e-13  Score=114.13  Aligned_cols=195  Identities=18%  Similarity=0.192  Sum_probs=141.4

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHH------cCCCcHHHHHHHHH
Q psy16588        126 AKIFEGLNNMPMSVKYYKLILKRDATCM----EAIACIGVNHFYNDQPEVALLFYRRLLQ------MGLYNAELFNNLAL  195 (341)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~  195 (341)
                      |.-+++.|++...+.+|+.+++...++.    .+|..+|..|+.+++|++|+++-..=+.      ..-..+...-+||+
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            4667888999999999999998876654    3467889999999999999887543222      12223445668888


Q ss_pred             HHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHh
Q psy16588        196 CCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISD--------------------TRLAIQCLHLALS  251 (341)
Q Consensus       196 ~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~  251 (341)
                      ++-..|.|++|+.++.+-+.+...-    ....+++++|.+|...|+                    ++.|.++|.+-++
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            8888999999998888877664322    336788889988877653                    3445556655555


Q ss_pred             cCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch------hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        252 IDSS------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY------ETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       252 ~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      +...      ...++-++|..|+-+|+|+.|+...+.-+.+.....      .++.++|.++.-.|+++.|+++|++.+.
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence            4322      134667788888888899999888888777654433      3788888888889999999888888764


Q ss_pred             c
Q psy16588        320 L  320 (341)
Q Consensus       320 ~  320 (341)
                      +
T Consensus       264 L  264 (639)
T KOG1130|consen  264 L  264 (639)
T ss_pred             H
Confidence            4

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.46  E-value=5.2e-11  Score=106.40  Aligned_cols=200  Identities=14%  Similarity=0.085  Sum_probs=161.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCC---------
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-----QPEVALLFYRRLLQMGLY---------  185 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~---------  185 (341)
                      ...-..|.++...|++++|...|...++.+|++...+..+..+.....     +.+.-..+|++.....|.         
T Consensus        39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L  118 (517)
T PF12569_consen   39 AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPL  118 (517)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhc
Confidence            334557899999999999999999999999999988888877773222     333444444443222111         


Q ss_pred             ------------------------------------------------------------------------c--HHHHH
Q psy16588        186 ------------------------------------------------------------------------N--AELFN  191 (341)
Q Consensus       186 ------------------------------------------------------------------------~--~~~~~  191 (341)
                                                                                              .  ..+++
T Consensus       119 ~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~  198 (517)
T PF12569_consen  119 DFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLY  198 (517)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHH
Confidence                                                                                    1  12458


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16588        192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG  271 (341)
Q Consensus       192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  271 (341)
                      .++..|...|++++|+++++++|...|..  ++.+...|.++...|++.+|.+.++.+..++..+-.+....+..+.+.|
T Consensus       199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  199 FLAQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence            88999999999999999999999999999  9999999999999999999999999999999999988889999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCch-------hHHH--HHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        272 HIERASTYLQAAAASSPYLY-------ETHY--NQAVISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       272 ~~~~A~~~~~~al~~~p~~~-------~~~~--~l~~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                      +.++|...+..-...+.+..       -.|+  ..|.+|.+.|++..|++.|..+.+..
T Consensus       277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999987655432111       1444  57899999999999999999888663

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.45  E-value=4.2e-12  Score=92.28  Aligned_cols=109  Identities=15%  Similarity=0.119  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYN  296 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  296 (341)
                      ...++.+|..+...|++++|+..|++++..+|++   ..+++.+|.++...|++++|+..|++++...|++   ..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4567888888888888888888888888877765   4677888888888888888888888888887765   457888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        297 QAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL  331 (341)
Q Consensus       297 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  331 (341)
                      +|.++...|++++|..++++++...|++..+....
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            88888888888888888888888888887655443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.45  E-value=3.6e-11  Score=95.69  Aligned_cols=158  Identities=16%  Similarity=0.113  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNI  229 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~l  229 (341)
                      ..++..|..++..|++.+|+..|++++...|..   ..+.+.+|.+++..|++++|+..+++.+...|.+ ....+++.+
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~   85 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML   85 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence            344444444444555555555555444443332   2344444555555555555555555555544444 233444444


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHhCCHHHHHHHHH
Q psy16588        230 SHVAIGI-----------SDTRLAIQCLHLALSIDSSHG-----------------LSQNNLAVLEAREGHIERASTYLQ  281 (341)
Q Consensus       230 a~~~~~~-----------g~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~  281 (341)
                      |.+++..           +...+|+..|+..++..|++.                 .--+.+|..|.+.|.+..|+..++
T Consensus        86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~  165 (203)
T PF13525_consen   86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ  165 (203)
T ss_dssp             HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred             HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            4443322           223355555555555555542                 122346778888888888888888


Q ss_pred             HHHHhCCCchh---HHHHHHHHHHHcCCHHHHH
Q psy16588        282 AAAASSPYLYE---THYNQAVISNLAGDLQESY  311 (341)
Q Consensus       282 ~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~  311 (341)
                      .+++..|+...   ++..++.+|.++|..+.|.
T Consensus       166 ~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  166 YVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            88888887653   6777888888888877443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.44  E-value=2.1e-10  Score=95.32  Aligned_cols=200  Identities=14%  Similarity=0.073  Sum_probs=117.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      .+++.-+....+.|+++.+-.++.++-+..++ ...+....+.+....|++..|..-..++++..|.++.+......+|.
T Consensus       119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~  198 (400)
T COG3071         119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYI  198 (400)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence            33444445555566666666666665555322 23344455555556666666666666666666666666655566666


Q ss_pred             HcCChhHHHHHHHHHHhh--------------------------------------cccc--chHHHHHHHHHHHHhcCC
Q psy16588        199 YSQQYDMVVTCFERALSL--------------------------------------ALNE--NAADVWYNISHVAIGISD  238 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~--------------------------------------~~~~--~~~~~~~~la~~~~~~g~  238 (341)
                      ..|+|.+...++.+.-+.                                      -|..  ..+.+...++.-+...|+
T Consensus       199 ~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~  278 (400)
T COG3071         199 RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD  278 (400)
T ss_pred             HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence            666655555544443222                                      0000  012233334444555555


Q ss_pred             HHHHHHHHHHH-------------------------------HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        239 TRLAIQCLHLA-------------------------------LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       239 ~~~A~~~~~~a-------------------------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      .++|.+..+++                               ++..|+++..+..+|..+.+.+.|.+|..+|+.+++..
T Consensus       279 ~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~  358 (400)
T COG3071         279 HDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR  358 (400)
T ss_pred             hHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence            55555555554                               44456667777777777777777777777777777776


Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      |+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus       359 ~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         359 PS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            64 445667777777777777777777777743

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.44  E-value=3.8e-12  Score=106.14  Aligned_cols=202  Identities=17%  Similarity=0.073  Sum_probs=153.7

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDA--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ...++..+...++.+..+..++..+....  .+.......|.++...|++++|++.+.+.     .+.+.......++..
T Consensus        69 v~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~  143 (290)
T PF04733_consen   69 VRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLK  143 (290)
T ss_dssp             HHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHH
Confidence            33344444433455566666655543322  23445567778888899999999988764     567888888899999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      .++++.|.+.++.+.+.+.+.  .-.....+.+.+..|  .+.+|...|++.....+.++..++.++.++..+|+|++|.
T Consensus       144 ~~R~dlA~k~l~~~~~~~eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe  221 (290)
T PF04733_consen  144 MNRPDLAEKELKNMQQIDEDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE  221 (290)
T ss_dssp             TT-HHHHHHHHHHHHCCSCCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            999999999999998887766  444444444555555  6999999999988888889999999999999999999999


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        278 TYLQAAAASSPYLYETHYNQAVISNLAGDL-QESYNIVKKSLDLHPGHSYSWDI  330 (341)
Q Consensus       278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~  330 (341)
                      ..+++++..+|++++++.+++.+....|+. +.+.+++.+....+|+++.....
T Consensus       222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            999999999999999999999999999998 66778888888899999765543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.40  E-value=1.4e-11  Score=95.18  Aligned_cols=103  Identities=22%  Similarity=0.295  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV  299 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  299 (341)
                      ...++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..|++++.+.|.+...+.+++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4455555555555555555555555555554332   2355555555555555555555555555555555555555555


Q ss_pred             HHH-------HcCCHH-------HHHHHHHHHHhcCCCCH
Q psy16588        300 ISN-------LAGDLQ-------ESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       300 ~~~-------~~g~~~-------~A~~~~~~al~~~p~~~  325 (341)
                      ++.       ..|+++       +|+.+|++++..+|++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            555       445544       55666667777777653

>PLN03077 Protein ECB2; Provisional

Probab=99.40  E-value=9.6e-11  Score=113.72  Aligned_cols=188  Identities=11%  Similarity=0.022  Sum_probs=154.9

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCC
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCCFYSQQ  202 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~  202 (341)
                      +-..|.+.|++++|...|+..    +.+...|..+...|...|+.++|+++|++..+.  .| +...+..+-..+...|+
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~  604 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGM  604 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcCh
Confidence            346788899999999998886    457888999999999999999999999998875  34 34456666677888999


Q ss_pred             hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16588        203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA  282 (341)
Q Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  282 (341)
                      +++|..+|+...+..+-......|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++
T Consensus       605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~  682 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQH  682 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            99999999998744322211578889999999999999999999886 34454 67788888888889999999999999


Q ss_pred             HHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       283 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ++++.|++...+..++.+|...|++++|.+..+...+
T Consensus       683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999998887754

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=4.2e-11  Score=96.72  Aligned_cols=118  Identities=19%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Q psy16588        205 MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---HIERASTYLQ  281 (341)
Q Consensus       205 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~  281 (341)
                      .-+.-++.-+..+|++  .+.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++....   ...++...++
T Consensus       140 ~l~a~Le~~L~~nP~d--~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         140 ALIARLETHLQQNPGD--AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3334444444445555  5555555555555555555555555555555555555555554443322   2344555555


Q ss_pred             HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        282 AAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       282 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      +++..+|.+..+.+.||..++..|+|.+|...++..++..|.+
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            5555555555555555555555555555555555555554444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.38  E-value=2.4e-11  Score=94.26  Aligned_cols=121  Identities=18%  Similarity=0.268  Sum_probs=94.4

Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL  263 (341)
Q Consensus       185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  263 (341)
                      .....++.+|..+...|++++|+.+|++++...|+. ....++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            455677888888888888888888888888776654 1246788888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  325 (341)
                      |.++...|+...+...+..++.                    .+++|..++++++.++|++.
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence            8888888887776665555442                    26788888888888888873

>PLN03077 Protein ECB2; Provisional

Probab=99.38  E-value=2.2e-10  Score=111.31  Aligned_cols=145  Identities=11%  Similarity=0.071  Sum_probs=86.2

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh--ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHH
Q psy16588        186 NAELFNNLALCCFYSQQYDMVVTCFERALSL--ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID--SSHGLSQN  261 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~  261 (341)
                      +...|..+...|...|+.++|+++|++..+.  .|+   ...+..+...+.+.|++++|.++|+.+.+..  ..+...|.
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd---~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~  629 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD---EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA  629 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence            4445555566666666666666666665543  232   2344444455666666666666666665322  12235566


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      .+..++.+.|++++|.+.+++. .+.|+ ..+|..|...+...|+.+.+....++.+++.|++...+..+..+.
T Consensus       630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y  701 (857)
T PLN03077        630 CVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY  701 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence            6666666677777776666654 23342 455666666666667777777777777777777777666665554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.37  E-value=3.7e-11  Score=93.22  Aligned_cols=118  Identities=14%  Similarity=0.099  Sum_probs=98.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16588        151 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  227 (341)
Q Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  227 (341)
                      .....++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+.++++++...|.+  ...+.
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~  110 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALN  110 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHH
Confidence            456678889999999999999999999998876653   4688999999999999999999999999999988  88899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16588        228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      .+|.++...|+...+...+.+++.                    .+++|+.++++++..+|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            999999998888777766666542                    3677888888888888776

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.37  E-value=4.2e-10  Score=91.67  Aligned_cols=164  Identities=7%  Similarity=-0.086  Sum_probs=137.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEA---IACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNL  193 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  193 (341)
                      ...+..|..++..|++++|+..|++++...|....+   .+.+|.+|+..+++++|+..|++.++.+|++   +.+++.+
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~  112 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR  112 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence            557778899999999999999999999999987655   4899999999999999999999999998876   4678888


Q ss_pred             HHHHHHcC---------------C---hhHHHHHHHHHHhhcccc-chHHH--------------HHHHHHHHHhcCCHH
Q psy16588        194 ALCCFYSQ---------------Q---YDMVVTCFERALSLALNE-NAADV--------------WYNISHVAIGISDTR  240 (341)
Q Consensus       194 a~~~~~~~---------------~---~~~A~~~~~~al~~~~~~-~~~~~--------------~~~la~~~~~~g~~~  240 (341)
                      |.++...+               +   ..+|+..|++.++..|++ ...++              -+.+|..|.+.|.|.
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~  192 (243)
T PRK10866        113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV  192 (243)
T ss_pred             HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            88764443               1   347889999999999988 11222              145688899999999


Q ss_pred             HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        241 LAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       241 ~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      .|+.-++.+++..|+.   .+++..++..|..+|..++|.......
T Consensus       193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            9999999999988765   578899999999999999998877554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.37  E-value=1.9e-11  Score=84.76  Aligned_cols=98  Identities=22%  Similarity=0.265  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16588        225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA  304 (341)
Q Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  304 (341)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            45667777777777777777777777777777677777777777777777777777777777777767777777777777


Q ss_pred             CCHHHHHHHHHHHHhcCC
Q psy16588        305 GDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       305 g~~~~A~~~~~~al~~~p  322 (341)
                      |++++|..++.+++...|
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            777777777777776665

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.37  E-value=1.7e-10  Score=91.75  Aligned_cols=152  Identities=13%  Similarity=0.076  Sum_probs=122.4

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q psy16588        186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---LSQN  261 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~  261 (341)
                      ++..++..|..++..|+|.+|+..|++++...|.. ....+.+.+|.+++..|++++|+..+++.++..|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46778999999999999999999999999999887 6678999999999999999999999999999998874   5788


Q ss_pred             HHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCchhH-----------------HHHHHHHHHHcCCHHHHHHH
Q psy16588        262 NLAVLEAREG-----------HIERASTYLQAAAASSPYLYET-----------------HYNQAVISNLAGDLQESYNI  313 (341)
Q Consensus       262 ~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~  313 (341)
                      .+|.++....           ...+|+..|+..+...|++..+                 -+.+|..|.+.|.+..|+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            8888876543           3458999999999999987542                 23578889999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        314 VKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       314 ~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      ++.+++..|+.......+..+...
T Consensus       164 ~~~v~~~yp~t~~~~~al~~l~~~  187 (203)
T PF13525_consen  164 FQYVIENYPDTPAAEEALARLAEA  187 (203)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHH
Confidence            999999999997765555554443

>KOG4340|consensus

Probab=99.36  E-value=4.3e-11  Score=95.73  Aligned_cols=188  Identities=15%  Similarity=0.056  Sum_probs=162.8

Q ss_pred             HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16588        129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  208 (341)
Q Consensus       129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  208 (341)
                      +.+..+|.++++++..-.+..|.+...+..+|.||+...++..|-.+|++.-.+.|.........+..++..+.+.+|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16588        209 CFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  288 (341)
Q Consensus       209 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  288 (341)
                      +.........-  .......-+.+.+..+++..+....++.-  ..+++....+.|.+.++.|+++.|++-|+.+++...
T Consensus       100 V~~~~~D~~~L--~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG  175 (459)
T KOG4340|consen  100 VAFLLLDNPAL--HSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG  175 (459)
T ss_pred             HHHHhcCCHHH--HHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence            98877654211  24555556677778888888877666532  125678899999999999999999999999999998


Q ss_pred             CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        289 YLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      -++-.-++++.+.++.|+++.|+++..+.++.
T Consensus       176 yqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  176 YQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            88889999999999999999999998887754

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.36  E-value=4.1e-11  Score=92.67  Aligned_cols=102  Identities=11%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             CCchHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHH
Q psy16588        133 NNMPMSVKYYKLILKRDATC--MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVV  207 (341)
Q Consensus       133 g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~  207 (341)
                      ..+..+...+...++..+.+  ...++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~   92 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL   92 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            33555555555554444333  3445666666666666666666666666554432   235666666666666666666


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhc
Q psy16588        208 TCFERALSLALNENAADVWYNISHVAIGI  236 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~  236 (341)
                      ..|++++.+.|..  ...+.++|.++...
T Consensus        93 ~~~~~Al~~~~~~--~~~~~~la~i~~~~  119 (168)
T CHL00033         93 EYYFQALERNPFL--PQALNNMAVICHYR  119 (168)
T ss_pred             HHHHHHHHhCcCc--HHHHHHHHHHHHHh
Confidence            6666666666655  55566666666533

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.36  E-value=3.7e-11  Score=87.29  Aligned_cols=104  Identities=14%  Similarity=0.092  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLA  264 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~  264 (341)
                      .++.+|..+...|++++|+..|++++..+|++ ....+++.+|.++...|++++|+..|++++...|++   +.++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            44555555555555555555555555554443 113445555555555555555555555555555443   34455555


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      .++...|++++|+..++++++..|++..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            5555555555555555555555555443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.36  E-value=2.4e-11  Score=101.36  Aligned_cols=167  Identities=17%  Similarity=0.084  Sum_probs=140.8

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ...+..|.++...|++++|++.+.+.     .+.+.......++..+++++.|.+.++.+.+.+.+...+....+++.+.
T Consensus       103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~  177 (290)
T PF04733_consen  103 IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA  177 (290)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            44566678888899999999988764     5788888899999999999999999999999888877766666667666


Q ss_pred             cC--ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH-HHH
Q psy16588        200 SQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI-ERA  276 (341)
Q Consensus       200 ~~--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A  276 (341)
                      .|  ++.+|..+|++.....+.+  +..++.++.+++.+|+|++|.+.+++++..+|.+++++.+++.+....|+. +.+
T Consensus       178 ~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  178 TGGEKYQDAFYIFEELSDKFGST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             HTTTCCCHHHHHHHHHHCCS--S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             hCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence            66  6999999999998887788  899999999999999999999999999999999999999999999999998 667


Q ss_pred             HHHHHHHHHhCCCchhH
Q psy16588        277 STYLQAAAASSPYLYET  293 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~  293 (341)
                      .+++.+....+|+++.+
T Consensus       256 ~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  256 ERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHhCCCChHH
Confidence            78888888889987653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=4.4e-11  Score=96.60  Aligned_cols=120  Identities=18%  Similarity=0.103  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC---CHHHHHHH
Q psy16588        169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS---DTRLAIQC  245 (341)
Q Consensus       169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~  245 (341)
                      .+.-+.-++.-+..+|++.+-|..||.+|+.+|++..|...|.+++++.|++  ++.+..+|.+++.+.   ...++...
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            4444455555555666666666666666666666666666666666666666  666666665554332   24456666


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16588        246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       246 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      ++++++.+|.+..+.+.||..++..|+|.+|+..++..++..|.+
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            666666666666666666666666666666666666666655544

>KOG3785|consensus

Probab=99.35  E-value=3.6e-10  Score=92.63  Aligned_cols=194  Identities=20%  Similarity=0.139  Sum_probs=138.7

Q ss_pred             HHHcCCchHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16588        129 FEGLNNMPMSVKYYKLILKRDATCM-EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV  207 (341)
Q Consensus       129 ~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  207 (341)
                      +....+|..|+.+++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+...+.-+.+.+.+|+.+++..|.|.+|.
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence            4457889999999888776554433 556678999999999999999999998877778899999999999999999998


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      ....++    |++  +-....+-.+..+.++-++-. .|.+.+.   +..+-...++.+.+..-.|.+|+..|++.+..+
T Consensus       112 ~~~~ka----~k~--pL~~RLlfhlahklndEk~~~-~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn  181 (557)
T KOG3785|consen  112 SIAEKA----PKT--PLCIRLLFHLAHKLNDEKRIL-TFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN  181 (557)
T ss_pred             HHHhhC----CCC--hHHHHHHHHHHHHhCcHHHHH-HHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            877665    333  222222223333444433332 2333332   122344556677777778888888888888877


Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR  332 (341)
Q Consensus       288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  332 (341)
                      |+....-..++.||.++.-++-+.+.++-.++..|+++-+...++
T Consensus       182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka  226 (557)
T KOG3785|consen  182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA  226 (557)
T ss_pred             hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence            777777777888888888888888888888888888877665443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.35  E-value=3.8e-09  Score=88.03  Aligned_cols=211  Identities=10%  Similarity=-0.023  Sum_probs=173.1

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHc
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYS  200 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~  200 (341)
                      ..+-|..-+..|+|.+|.+...+.-+..+...-++..-+..-.++|+++.+-.++.++-+..++ ...+....+.+....
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            4455677778999999999999988877777777888888999999999999999999998544 456777889999999


Q ss_pred             CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------------------
Q psy16588        201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID---------------------------  253 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------------  253 (341)
                      |+++.|.....++++..|.+  +.+......+|...|+|.+...++.+.-+..                           
T Consensus       167 ~d~~aA~~~v~~ll~~~pr~--~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         167 RDYPAARENVDQLLEMTPRH--PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             CCchhHHHHHHHHHHhCcCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999  9999999999999999999887776644321                           


Q ss_pred             ---------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------------------HhC
Q psy16588        254 ---------------SSHGLSQNNLAVLEAREGHIERASTYLQAAA-------------------------------ASS  287 (341)
Q Consensus       254 ---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------------------~~~  287 (341)
                                     ..++.....++.-+..+|++++|.+..++++                               +..
T Consensus       245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence                           1124455566777888999999988877764                               345


Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      |+++..+..||..+.+.+.+.+|..+|+.+++..|+..+ +..++...
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~  371 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADAL  371 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHH
Confidence            777789999999999999999999999999999887543 33444433

>KOG3785|consensus

Probab=99.35  E-value=7.3e-11  Score=96.62  Aligned_cols=211  Identities=16%  Similarity=0.134  Sum_probs=161.6

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------------cCC---
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ--------------MGL---  184 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------~~p---  184 (341)
                      .+-+|.+++..|+|++|...|.-+...+.-+.+.+.+++.+++.+|.|.+|.....++-+              ++.   
T Consensus        60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~  139 (557)
T KOG3785|consen   60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR  139 (557)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence            445679999999999999999999987777889999999999999999999887766422              111   


Q ss_pred             ---------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16588        185 ---------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS  255 (341)
Q Consensus       185 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  255 (341)
                               +..+-...|+.+.+..-.|++|+++|++.+.-+|+.  ......++.||.++.-++-+.+.+.-.++..|+
T Consensus       140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey--~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY--IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh--hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence                     112224567777777889999999999999999998  888899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHh--CCH----------------HHHHHHHHH----------HHHhCCC----chhHHHHHHHHHHH
Q psy16588        256 HGLSQNNLAVLEARE--GHI----------------ERASTYLQA----------AAASSPY----LYETHYNQAVISNL  303 (341)
Q Consensus       256 ~~~~~~~l~~~~~~~--g~~----------------~~A~~~~~~----------al~~~p~----~~~~~~~l~~~~~~  303 (341)
                      +..+.+..+...++.  |+.                +.+...++.          +++.-|.    -+++..+|...|.+
T Consensus       218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~  297 (557)
T KOG3785|consen  218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN  297 (557)
T ss_pred             cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence            988888777766654  222                122222211          1222222    34588899999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       304 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      +++.++|+...+.   ++|..+.-+...+.+...
T Consensus       298 q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aa  328 (557)
T KOG3785|consen  298 QNDVQEAISLCKD---LDPTTPYEYILKGVVFAA  328 (557)
T ss_pred             cccHHHHHHHHhh---cCCCChHHHHHHHHHHHH
Confidence            9999999887664   788887766655554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.35  E-value=1.3e-10  Score=87.49  Aligned_cols=117  Identities=17%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             cCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHH
Q psy16588        166 NDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRL  241 (341)
Q Consensus       166 ~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~  241 (341)
                      .++...+...++..+..+|+.   ..+.+.+|.+++..|++++|+..|++++...|+. ....+.+.++.++...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            455555555555555555554   3344555555555555555555555555554333 223345555555555555555


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       242 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      |+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus       104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            5555544 2222333444555555555555555555555544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.34  E-value=7.7e-12  Score=81.20  Aligned_cols=66  Identities=27%  Similarity=0.343  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG-DLQESYNIVKKSLDLHP  322 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p  322 (341)
                      +.+|..+|.++...|++++|+..|+++++++|++..+++++|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4455555555555555555555555555555555555555555555555 45555555555555554

...

>KOG1915|consensus

Probab=99.32  E-value=1.7e-09  Score=92.02  Aligned_cols=216  Identities=13%  Similarity=0.064  Sum_probs=191.9

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..|+..|.--..++++..|..+|++++..+..+...|...+.+-++..+...|...+.+++.+-|.-...|+....+-..
T Consensus        74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~  153 (677)
T KOG1915|consen   74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM  153 (677)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            56777788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|+...|..+|++-+...|+   ..+|......-...++.+.|...|++.+-..|+ ...|...+..-.+.|+...|...
T Consensus       154 LgNi~gaRqiferW~~w~P~---eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~V  229 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEWEPD---EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSV  229 (677)
T ss_pred             hcccHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHH
Confidence            99999999999999999998   588998888888999999999999999988865 67889999999999999999999


Q ss_pred             HHHHHHhCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhh
Q psy16588        280 LQAAAASSPYLYE---THYNQAVISNLAGDLQESYNIVKKSLDLHPGH--SYSWDILRKLEQYFS  339 (341)
Q Consensus       280 ~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~  339 (341)
                      |++|++.-.++..   .....+..-..+..++.|...|+-+++.-|.+  .+.+..+....++++
T Consensus       230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG  294 (677)
T KOG1915|consen  230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG  294 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence            9999987665433   55567777788899999999999999999988  556666666655554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.32  E-value=1.5e-10  Score=97.11  Aligned_cols=164  Identities=17%  Similarity=0.130  Sum_probs=95.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHH
Q psy16588        160 GVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNI  229 (341)
Q Consensus       160 a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~l  229 (341)
                      |.+|...|++++|.++|.++....-      .-...+...+.++... ++++|+.+|++++.+.-..    .....+..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4555556666666666666544321      1123344555555444 7777777777777653222    224566777


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-------hHHH
Q psy16588        230 SHVAIGI-SDTRLAIQCLHLALSIDSS--H----GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-------ETHY  295 (341)
Q Consensus       230 a~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~  295 (341)
                      |.+|... |++++|+++|+++++....  .    ...+..+|.++...|+|++|+..|++.....-++.       ..++
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            7777776 7777777777777765321  1    34556677777777777777777777766432211       1344


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        296 NQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      ..+.|+...|++..|...+++....+|..
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            56667777777777777777777777654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.31  E-value=5e-11  Score=82.54  Aligned_cols=97  Identities=24%  Similarity=0.326  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      ++.+|.++...|++++|+..++++++..|.+  ..++..+|.++...+++++|+..+++++...|.+..++..+|.++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            3444555555555555555555555555544  44555555555555555555555555555555555555555555555


Q ss_pred             hCCHHHHHHHHHHHHHhCC
Q psy16588        270 EGHIERASTYLQAAAASSP  288 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p  288 (341)
                      .|++++|...+.+++...|
T Consensus        81 ~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          81 LGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHhHHHHHHHHHHHHccCC
Confidence            5555555555555554443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.30  E-value=1.8e-10  Score=85.22  Aligned_cols=103  Identities=10%  Similarity=-0.037  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      .+..+..|.-++..|++++|...|+-..-.+|.+.+.|..||.++..+++|++|+..|..+..++++++...+..|.|+.
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l  116 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL  116 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence            55556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        303 LAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       303 ~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      .+|+.++|..+|+.++. .|.+..
T Consensus       117 ~l~~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331        117 LMRKAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HhCCHHHHHHHHHHHHh-CcchHH
Confidence            66666666666666666 344433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.30  E-value=1.9e-11  Score=79.34  Aligned_cols=66  Identities=24%  Similarity=0.394  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQAAAASSP  288 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p  288 (341)
                      +..|..+|.+++..|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5667777777777777777777777777777777777777777777777 57777777777777665

...

>PRK11906 transcriptional regulator; Provisional

Probab=99.30  E-value=1.2e-09  Score=93.88  Aligned_cols=163  Identities=10%  Similarity=0.093  Sum_probs=135.9

Q ss_pred             HHHHHHHHhcCC---hHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHc---------CChhHHHHHHHHHHhhccccc
Q psy16588        157 ACIGVNHFYNDQ---PEVALLFYRRLL---QMGLYNAELFNNLALCCFYS---------QQYDMVVTCFERALSLALNEN  221 (341)
Q Consensus       157 ~~la~~~~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~  221 (341)
                      +..|......+.   .+.|+.+|.+++   .++|....++..++.|++..         ....+|....+++++++|.+ 
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D-  337 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD-  337 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence            666766665543   567999999999   99999999999999998764         24567899999999999999 


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH-
Q psy16588        222 AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI-  300 (341)
Q Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-  300 (341)
                       +.++..+|.++...++++.|...|++++.++|+.+.+|+..|.+....|+.++|...++++++++|.-..+-...-.+ 
T Consensus       338 -a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~  416 (458)
T PRK11906        338 -GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD  416 (458)
T ss_pred             -HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence             999999999999999999999999999999999999999999999999999999999999999999765543332222 


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC
Q psy16588        301 SNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       301 ~~~~g~~~~A~~~~~~al~~~  321 (341)
                      .+-....++|+..|-+--+..
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~  437 (458)
T PRK11906        417 MYVPNPLKNNIKLYYKETESE  437 (458)
T ss_pred             HHcCCchhhhHHHHhhccccc
Confidence            334566788888887654443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.29  E-value=3.9e-10  Score=84.80  Aligned_cols=121  Identities=12%  Similarity=-0.046  Sum_probs=104.1

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHc
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYS  200 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~  200 (341)
                      ......++...+...++..+..+|+.   ..+.+.+|.+++..|++++|+..|+.++...|+.   ..+...++.++...
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~   98 (145)
T PF09976_consen   19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ   98 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence            34446899999999999999999988   5667889999999999999999999999987655   45788999999999


Q ss_pred             CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16588        201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL  250 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  250 (341)
                      |++++|+..++.. ...+..  +.++..+|.++...|++++|+..|++++
T Consensus        99 ~~~d~Al~~L~~~-~~~~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   99 GQYDEALATLQQI-PDEAFK--ALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CCHHHHHHHHHhc-cCcchH--HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999773 223333  7788999999999999999999999875

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.29  E-value=4.6e-10  Score=101.01  Aligned_cols=120  Identities=14%  Similarity=0.023  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHhh--ccccchHHHHHHHHHHHHhcCC
Q psy16588        169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ--------YDMVVTCFERALSL--ALNENAADVWYNISHVAIGISD  238 (341)
Q Consensus       169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~--~~~~~~~~~~~~la~~~~~~g~  238 (341)
                      +..|+.+|+++++++|+++.++-.++.++.....        ...+....++++.+  ++..  +.++..+|..+...|+
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~--~~~~~ala~~~~~~g~  435 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL--PRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC--hHHHHHHHHHHHhcCC
Confidence            5556666666666666666665555555433211        22233333333332  2222  4444444444444455


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16588        239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  291 (341)
Q Consensus       239 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  291 (341)
                      +++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++
T Consensus       436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            5555555555555554 244444555555555555555555555555554443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.28  E-value=4.1e-10  Score=101.32  Aligned_cols=143  Identities=13%  Similarity=0.006  Sum_probs=117.2

Q ss_pred             HcCCCcHHHH--HHHHHHHHHcCC---hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC--------CHHHHHHHHH
Q psy16588        181 QMGLYNAELF--NNLALCCFYSQQ---YDMVVTCFERALSLALNENAADVWYNISHVAIGIS--------DTRLAIQCLH  247 (341)
Q Consensus       181 ~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~  247 (341)
                      ...|.+..+|  +..|..+...++   ...|+.+|+++++++|++  ..++..++.++....        +...+....+
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~--a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF--TYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            3455665554  445555555444   779999999999999999  888888888775432        3456666667


Q ss_pred             HHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        248 LALSI--DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       248 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  325 (341)
                      +++..  ++.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            76664  677788999999999999999999999999999999 578999999999999999999999999999999987


Q ss_pred             H
Q psy16588        326 Y  326 (341)
Q Consensus       326 ~  326 (341)
                      .
T Consensus       488 t  488 (517)
T PRK10153        488 T  488 (517)
T ss_pred             h
Confidence            5

>KOG1915|consensus

Probab=99.28  E-value=4e-09  Score=89.74  Aligned_cols=220  Identities=11%  Similarity=0.102  Sum_probs=180.5

Q ss_pred             ccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHH---------HHHHHHH-HHhcCChHHHHHHHHHH
Q psy16588        110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEA---------IACIGVN-HFYNDQPEVALLFYRRL  179 (341)
Q Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------~~~la~~-~~~~~~~~~A~~~~~~a  179 (341)
                      ..+|.|-   .+|+.+-.+-...|+.+.-.+.|++++..-|-..+-         |.+.+.. -....+.+.+.+.|+.+
T Consensus       316 ~~np~nY---DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~  392 (677)
T KOG1915|consen  316 SKNPYNY---DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC  392 (677)
T ss_pred             HhCCCCc---hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3455555   889988888888999999999999999887753322         2222221 12568999999999999


Q ss_pred             HHcCCCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16588        180 LQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS  255 (341)
Q Consensus       180 l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  255 (341)
                      +++-|..    +.+|...|....++.+...|...+-.++...|.+   ..+.....+-.++++++....+|++.++..|.
T Consensus       393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe  469 (677)
T KOG1915|consen  393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPE  469 (677)
T ss_pred             HhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence            9998864    5678889999999999999999999999999985   55666667778889999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        256 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE--THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      +..+|...|..-..+|+.+.|...|+-|+....-+..  .|......-...|.++.|..+|++.++..+... +|...+.
T Consensus       470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~  548 (677)
T KOG1915|consen  470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK  548 (677)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence            9999999999999999999999999999976543332  666777788889999999999999999987665 7766665


Q ss_pred             HHH
Q psy16588        334 LEQ  336 (341)
Q Consensus       334 ~~~  336 (341)
                      +..
T Consensus       549 fe~  551 (677)
T KOG1915|consen  549 FEA  551 (677)
T ss_pred             Hhc
Confidence            543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.27  E-value=2.8e-10  Score=93.35  Aligned_cols=113  Identities=17%  Similarity=0.181  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHH
Q psy16588        223 ADVWYNISHVA-IGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHY  295 (341)
Q Consensus       223 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  295 (341)
                      ...++..+..+ +..|+|++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|++++...|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46677777765 56799999999999999999987   5799999999999999999999999999888774   56889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      .+|.++..+|++++|...|+++++.+|++..+.....++.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~  261 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN  261 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence            9999999999999999999999999999987776665553

>KOG0543|consensus

Probab=99.27  E-value=1.8e-10  Score=96.48  Aligned_cols=100  Identities=11%  Similarity=0.068  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      ..++.|++.|+.++++|.+|+..+.++|..+|.|..+++..|.++..+|+|+.|+..|++++++.|+|..+...+..+-.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999888888888887


Q ss_pred             HcCCHHHH-HHHHHHHHhcCC
Q psy16588        303 LAGDLQES-YNIVKKSLDLHP  322 (341)
Q Consensus       303 ~~g~~~~A-~~~~~~al~~~p  322 (341)
                      +..++.+. .+.|.+++..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            77666554 677888776543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.27  E-value=7.4e-09  Score=84.46  Aligned_cols=204  Identities=22%  Similarity=0.224  Sum_probs=179.8

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHH-H
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILK--RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL-C  196 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~  196 (341)
                      ......+..+...+++..+...+...+.  ..+.....+...+..+...+++..++..+..++...+.........+. +
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            5566677888999999999999999987  677888899999999999999999999999999988877666666666 8


Q ss_pred             HHHcCChhHHHHHHHHHHhhccc-cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhCCHH
Q psy16588        197 CFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLEAREGHIE  274 (341)
Q Consensus       197 ~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~  274 (341)
                      +...|+++.|...+.+++...|. ......+...+..+...++++.++..+.+++...+. ....+..++..+...++++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence            99999999999999999887662 222667777777788999999999999999999999 6899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        275 RASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       275 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      +|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus       220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999987777888888888788899999999999999986

>KOG1070|consensus

Probab=99.27  E-value=3.2e-09  Score=100.68  Aligned_cols=217  Identities=14%  Similarity=0.066  Sum_probs=184.4

Q ss_pred             ccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16588        110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR-DAT----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  184 (341)
Q Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  184 (341)
                      ..+|+..   ..|+.+...+.+.++.++|.+.++++|.. ++.    -..+|..+-+....-|.-+.-.+.|++|.+.+.
T Consensus      1452 rssPNSS---i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd 1528 (1710)
T KOG1070|consen 1452 RSSPNSS---ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD 1528 (1710)
T ss_pred             hcCCCcc---hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc
Confidence            4567777   66777778899999999999999999974 332    234565555555566777788889999988653


Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q psy16588        185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNN  262 (341)
Q Consensus       185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~  262 (341)
                       ...++..|..+|...+++++|.++|+..++...+.  ..+|..++..++.+++-+.|...+.+|++.-|.  +..+...
T Consensus      1529 -~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1529 -AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred             -hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence             45678899999999999999999999999998877  999999999999999999999999999999987  7788889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR  332 (341)
Q Consensus       263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  332 (341)
                      .+.+.++.|+-+.+...|+..+..+|.-.+.|.-+...-.+.|+.+.....|++++.+.-.-..+.+...
T Consensus      1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred             HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987654444444333

>KOG0543|consensus

Probab=99.27  E-value=1.8e-10  Score=96.43  Aligned_cols=114  Identities=18%  Similarity=0.087  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16588        226 WYNISHVAIGISDTRLAIQCLHLALSIDSS---------------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      ....|..|++.|+|..|...|++++..-..               -..++.|++.++.++++|.+|+....++|.++|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            344455555556666666555555543211               13478899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        291 YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       291 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      ..+++..|.++..+|+++.|+..|+++++++|+|..+...+..|.+...
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~  339 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR  339 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888876543

>PRK11906 transcriptional regulator; Provisional

Probab=99.26  E-value=4.9e-10  Score=96.14  Aligned_cols=159  Identities=11%  Similarity=0.033  Sum_probs=132.9

Q ss_pred             hcHHHHHHHcC---CchHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCcH
Q psy16588        123 LNLAKIFEGLN---NMPMSVKYYKLIL---KRDATCMEAIACIGVNHFYN---------DQPEVALLFYRRLLQMGLYNA  187 (341)
Q Consensus       123 ~~l~~~~~~~g---~~~~A~~~~~~~l---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~  187 (341)
                      +..|...+..+   ..+.|+.+|.+++   ..+|+...++..++.+++..         .+..+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            33444444443   3457889999999   99999999999999998864         235678999999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-  266 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-  266 (341)
                      .++..+|.++...++++.|...|++++.++|+.  +.+|+..|.+....|+.++|.+.++++++++|....+-...-.+ 
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~--A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~  416 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDI--ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD  416 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence            999999999999999999999999999999999  99999999999999999999999999999999876544333333 


Q ss_pred             HHHhCCHHHHHHHHHHH
Q psy16588        267 EAREGHIERASTYLQAA  283 (341)
Q Consensus       267 ~~~~g~~~~A~~~~~~a  283 (341)
                      .+-....++|+..|-+-
T Consensus       417 ~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        417 MYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             HHcCCchhhhHHHHhhc
Confidence            44456778888877654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.25  E-value=2.9e-11  Score=81.72  Aligned_cols=79  Identities=24%  Similarity=0.221  Sum_probs=39.4

Q ss_pred             CCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q psy16588        237 SDTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIV  314 (341)
Q Consensus       237 g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  314 (341)
                      |+++.|+.+++++++..|.  +...++.+|.++++.|+|++|+..+++ .+.++.+...++.+|.++.++|++++|+.+|
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4555555555555555542  233444455555555555555555555 4444444444455555555555555555555


Q ss_pred             HH
Q psy16588        315 KK  316 (341)
Q Consensus       315 ~~  316 (341)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            44

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.25  E-value=4.6e-11  Score=80.73  Aligned_cols=79  Identities=24%  Similarity=0.460  Sum_probs=34.9

Q ss_pred             CChHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16588        167 DQPEVALLFYRRLLQMGLY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ  244 (341)
Q Consensus       167 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  244 (341)
                      |+++.|+.+|+++++..|.  +...++.+|.+++..|++++|+.++++ ...++.+  ....+.+|.++..+|++++|++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHHH
Confidence            4444444444444444442  233344444444444444444444444 4444433  4444444444444444444444


Q ss_pred             HHHH
Q psy16588        245 CLHL  248 (341)
Q Consensus       245 ~~~~  248 (341)
                      .|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            4443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.24  E-value=5.5e-10  Score=91.63  Aligned_cols=104  Identities=10%  Similarity=0.043  Sum_probs=58.9

Q ss_pred             HHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHH
Q psy16588        154 EAIACIGVNH-FYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYN  228 (341)
Q Consensus       154 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~  228 (341)
                      ..++..+..+ ...|++++|+..|+..++..|++   +.+++++|.+|+..|++++|+..|++++...|++ ...++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3444444443 33456666666666666665555   3455666666666666666666666666555554 33555555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        229 ISHVAIGISDTRLAIQCLHLALSIDSSHG  257 (341)
Q Consensus       229 la~~~~~~g~~~~A~~~~~~al~~~p~~~  257 (341)
                      +|.++...|++++|...|+++++..|+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            66666556666666666666665555544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.24  E-value=2.8e-09  Score=81.62  Aligned_cols=197  Identities=13%  Similarity=0.123  Sum_probs=148.4

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      +..++..|..|-..|-..-|.-.|.+++.+.|+.++++..+|..+...|+++.|.+.|...++++|....++.+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            36677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      .-|++.-|.+-+.+-.+.+|++-....|..+..   ..-+..+|...+.+-.+...+....|+..+   ..+|+.. -..
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgkiS-~e~  217 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGKIS-EET  217 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhhcc-HHH
Confidence            999999999999999999998833344444332   334566776655544333322222232222   2233332 123


Q ss_pred             HHHHHHHhCCCc-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        279 YLQAAAASSPYL-------YETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       279 ~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      .++++.....++       .++++.+|..+...|+.++|...|+-++.-+-
T Consensus       218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence            344444433333       34788999999999999999999999887653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.23  E-value=5.3e-11  Score=76.18  Aligned_cols=62  Identities=23%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      +|..+...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            34445555555555555555555555555555555555555555555555555555555544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.23  E-value=2.4e-09  Score=89.94  Aligned_cols=202  Identities=12%  Similarity=0.034  Sum_probs=148.6

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CcH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNA  187 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~  187 (341)
                      ..+...|..|...+++++|...|.++....-.      ....+...+.+|... ++++|+.+|++++.+.-      .-.
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA  114 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA  114 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            55667789999999999999999998765321      234566777777666 99999999999988632      124


Q ss_pred             HHHHHHHHHHHHc-CChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy16588        188 ELFNNLALCCFYS-QQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------  256 (341)
Q Consensus       188 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------  256 (341)
                      .++..+|.+|... |++++|+++|++++.+....    .....+..+|.++...|+|++|++.|++.....-++      
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            5788999999998 99999999999999985433    335677899999999999999999999998754221      


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh-----HHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC
Q psy16588        257 -GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE-----THYNQAVISNL--AGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       257 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p  322 (341)
                       ...+...+.++...|++..|...+++....+|....     ....+..++..  ...+.+++..|.+...+++
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence             234567788899999999999999999999886543     33444444443  3567777777776655554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.22  E-value=9.2e-11  Score=75.05  Aligned_cols=64  Identities=19%  Similarity=0.155  Sum_probs=43.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16588        228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  291 (341)
Q Consensus       228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  291 (341)
                      .+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566677777777777777777777777777777777777777777777777777777776653

>PRK15331 chaperone protein SicA; Provisional

Probab=99.20  E-value=5.5e-10  Score=82.65  Aligned_cols=102  Identities=18%  Similarity=0.272  Sum_probs=81.7

Q ss_pred             hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16588        148 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  227 (341)
Q Consensus       148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  227 (341)
                      +.++..+..+..|.-++..|++++|...|+-....+|.+.+.|..||.++..+++|++|+..|..+..+.+++  +...+
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~p~f  109 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YRPVF  109 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCccc
Confidence            3444566677788888888888888888888888888888888888888888888888888888888887777  77788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        228 NISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       228 ~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                      ..|.|++.+|+.+.|+.+|..++.
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHh
Confidence            888888888888888888888877

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.18  E-value=1.2e-09  Score=77.90  Aligned_cols=95  Identities=17%  Similarity=0.112  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS---HGLSQNNLAV  265 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~  265 (341)
                      ++.+|.++-..|+.++|+.+|++++...... ....++..+|.++..+|++++|+..+++++...|+   +..+...++.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            3444444444444444444444444433222 12334444455555555555555555554444444   3344444444


Q ss_pred             HHHHhCCHHHHHHHHHHHH
Q psy16588        266 LEAREGHIERASTYLQAAA  284 (341)
Q Consensus       266 ~~~~~g~~~~A~~~~~~al  284 (341)
                      ++...|++++|+..+-.++
T Consensus        84 ~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            4445555555544444433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.14  E-value=1.4e-08  Score=99.77  Aligned_cols=207  Identities=12%  Similarity=0.063  Sum_probs=156.4

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY--------  185 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------  185 (341)
                      .....+|.++...|++++|...+.+++.....      ...++..+|.++...|++++|...+++++.....        
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            34566788888999999999999998865332      1235667888999999999999999998875211        


Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy16588        186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------  256 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------  256 (341)
                      ....+..+|.++...|++++|...+++++......   .....+..++.++...|++++|...+.++..+....      
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence            23345678888999999999999999988763321   124566778889999999999998888876542110      


Q ss_pred             -----------------------------------H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------ch
Q psy16588        257 -----------------------------------G----LSQNNLAVLEAREGHIERASTYLQAAAASSPY------LY  291 (341)
Q Consensus       257 -----------------------------------~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~  291 (341)
                                                         .    ..+..++.++...|++++|...+++++.....      ..
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a  731 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN  731 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence                                               0    01346778888999999999999999876322      23


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      .++..+|.++...|+.++|...+.+++++......
T Consensus       732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~  766 (903)
T PRK04841        732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF  766 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence            47788999999999999999999999988755433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.13  E-value=2.6e-09  Score=92.16  Aligned_cols=118  Identities=16%  Similarity=0.257  Sum_probs=94.0

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV  206 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  206 (341)
                      ..+...++++.|+.+|++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            3445567788888888888777653   5566788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16588        207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA  249 (341)
Q Consensus       207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  249 (341)
                      +.+.++++...|..  ...|+.|+.+|...|++++|+..++.+
T Consensus       254 L~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  254 LEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            88888888888888  888888888888888888888776654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.13  E-value=1.9e-08  Score=98.83  Aligned_cols=200  Identities=13%  Similarity=-0.025  Sum_probs=157.0

Q ss_pred             hcHHHHHHHcCCchHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-----HH
Q psy16588        123 LNLAKIFEGLNNMPMSVKYYKLILKRDAT---------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-----AE  188 (341)
Q Consensus       123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~  188 (341)
                      ...+.++...|+++++...+..+....+.         .......++.++...|++++|..++++++...+..     ..
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV  492 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence            44567778899999999999988764321         13345567888899999999999999999854432     23


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------C
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--------H  256 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~  256 (341)
                      +...+|.++...|++++|...+++++......    .....+..++.++...|++++|...+++++.....        .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            56778999999999999999999998764432    12346678899999999999999999999876321        2


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPY-----LYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      ...+..+|.++...|++++|...+.+++.....     ....+..++.++...|++++|...+.++..+.+
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            334567889999999999999999999876432     234566789999999999999999999987643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.12  E-value=2.9e-09  Score=75.97  Aligned_cols=98  Identities=22%  Similarity=0.208  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNI  229 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~l  229 (341)
                      .+++.+|.++-..|+.++|+.+|++++......   ..++..+|..+...|++++|+..+++++...|++ ....+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467788888888888888888888888865443   4577888888888888888888888888887772 126677778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q psy16588        230 SHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~  251 (341)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888888877764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.12  E-value=3e-09  Score=91.73  Aligned_cols=117  Identities=21%  Similarity=0.146  Sum_probs=87.6

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI  273 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  273 (341)
                      -.++...++++.|+..+++..+.+|+     +...++.++...++-.+|+..+.++++..|.+...+...+..+...+++
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            34444567777888888777766644     3445677777777777888888888877777777777778888888888


Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16588        274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVK  315 (341)
Q Consensus       274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  315 (341)
                      +.|+...+++..+.|++...|+.|+.+|...|++++|+..+.
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            888888888888888877788888888888888888776655

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.11  E-value=1.4e-07  Score=76.89  Aligned_cols=199  Identities=19%  Similarity=0.161  Sum_probs=173.0

Q ss_pred             cCCchHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16588        132 LNNMPMSVKYYKLILKRDAT--CMEAIACIGVNHFYNDQPEVALLFYRRLLQ--MGLYNAELFNNLALCCFYSQQYDMVV  207 (341)
Q Consensus       132 ~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~  207 (341)
                      .+.+..+...+...+...+.  ........+..+...+++..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            56777788888888888776  378888999999999999999999999997  78888999999999999999999999


Q ss_pred             HHHHHHHhhccccchHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        208 TCFERALSLALNENAADVWYNISH-VAIGISDTRLAIQCLHLALSIDS---SHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      ..+.+++...+..  .......+. ++...|+++.|...+.+++...|   .....+...+..+...++++.++..+.++
T Consensus       116 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         116 ELLEKALALDPDP--DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHHHcCCCCc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            9999999988776  555555666 89999999999999999988776   45667777777788999999999999999


Q ss_pred             HHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        284 AASSPY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR  332 (341)
Q Consensus       284 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  332 (341)
                      +...+. ....+..++..+...+++++|...+.+++...|.....+..+.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  243 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLA  243 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHH
Confidence            999999 6889999999999999999999999999999998444443333

>KOG4234|consensus

Probab=99.09  E-value=2.4e-09  Score=80.92  Aligned_cols=115  Identities=14%  Similarity=0.078  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL  266 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  266 (341)
                      +-.-|+-++..|+|.+|..-|..++.+.|..   .....|.+.|.++++++.++.|+..+.++++++|.+..++...+.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            3456889999999999999999999998876   4456778888899999999999999999999999888888888999


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16588        267 EAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA  304 (341)
Q Consensus       267 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  304 (341)
                      |.++.+|++|+..|++.++.+|....+.-..+.+--..
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            99999999999999999999888776665555544333

>KOG2376|consensus

Probab=99.08  E-value=3.4e-08  Score=86.30  Aligned_cols=157  Identities=15%  Similarity=0.139  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16588        156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG  235 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~  235 (341)
                      ++.--..+...|+|++|.+...+.+...|++..+...-..++...++|++|+...++-......   ....+..+.|+++
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~---~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI---NSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc---chhhHHHHHHHHH
Confidence            3333445567899999999999999999999999999999999999999999555443322211   2233789999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------------------
Q psy16588        236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP---------------------------  288 (341)
Q Consensus       236 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------------------  288 (341)
                      ++..++|+..++   ..++.+..+....|.+++++|+|++|...|+..++.+.                           
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~  168 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP  168 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence            999999999999   45666677888899999999999999999998854321                           


Q ss_pred             ---C-chhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        289 ---Y-LYETHYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       289 ---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                         . +.+.++|.+.++...|+|.+|++.+++++
T Consensus       169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~  202 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIENGKYNQAIELLEKAL  202 (652)
T ss_pred             CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence               1 33467899999999999999999999994

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.08  E-value=5.2e-10  Score=72.26  Aligned_cols=66  Identities=18%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      ...|++++|+..|++++..+|++..+++.++.+|.+.|++++|...+++++..+|+++..+..+++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777776666666554

...

>KOG1941|consensus

Probab=99.06  E-value=4.9e-09  Score=86.32  Aligned_cols=208  Identities=18%  Similarity=0.138  Sum_probs=161.8

Q ss_pred             CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--
Q psy16588        114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN--  186 (341)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--  186 (341)
                      +..+.-.++++++..+....++.+++.+.+..+......     ..+...++..+..++.++++++.|+.+++...++  
T Consensus        78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D  157 (518)
T KOG1941|consen   78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD  157 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence            344555889999999999999999999999888764333     3567789999999999999999999999875443  


Q ss_pred             ----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q psy16588        187 ----AELFNNLALCCFYSQQYDMVVTCFERALSLALNE--------NAADVWYNISHVAIGISDTRLAIQCLHLALSID-  253 (341)
Q Consensus       187 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  253 (341)
                          ..++..||..+-...++++|.-+..++.++....        ....+++.++..+..+|+.-.|.++.+++.++. 
T Consensus       158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence                2478899999999999999999999998874322        123467889999999999999999999998764 


Q ss_pred             -----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHH-----HHHHHHHH
Q psy16588        254 -----SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQE-----SYNIVKKS  317 (341)
Q Consensus       254 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~-----A~~~~~~a  317 (341)
                           +........+|.+|...|+.+.|...|+++......-      ..++...+.++....-..+     |+++-+++
T Consensus       238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~  317 (518)
T KOG1941|consen  238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRL  317 (518)
T ss_pred             HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence                 2235567789999999999999999999998754321      2355566666655444443     77777777


Q ss_pred             HhcC
Q psy16588        318 LDLH  321 (341)
Q Consensus       318 l~~~  321 (341)
                      +++.
T Consensus       318 levA  321 (518)
T KOG1941|consen  318 LEVA  321 (518)
T ss_pred             HHHH
Confidence            7654

>KOG4648|consensus

Probab=99.06  E-value=1e-10  Score=95.35  Aligned_cols=207  Identities=6%  Similarity=-0.090  Sum_probs=144.9

Q ss_pred             hcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16588        123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ  202 (341)
Q Consensus       123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  202 (341)
                      -..|.-|+++|+|++|+.+|.+++..+|.++..+.+.+..|+..+.|..|..-+..++.++.....+|...+..-..+|+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhccccchHHHHHHHHHHHHh---------c-CCHHHHHHHHHHHH----------------------
Q psy16588        203 YDMVVTCFERALSLALNENAADVWYNISHVAIG---------I-SDTRLAIQCLHLAL----------------------  250 (341)
Q Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~---------~-g~~~~A~~~~~~al----------------------  250 (341)
                      ..+|.+-++.++.+.|.+  .+....++.+-.-         . | +-+|..--.+++                      
T Consensus       181 ~~EAKkD~E~vL~LEP~~--~ELkK~~a~i~Sl~E~~I~~KsT~G-~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~  257 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKN--IELKKSLARINSLRERKIATKSTPG-FTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV  257 (536)
T ss_pred             HHHHHHhHHHHHhhCccc--HHHHHHHHHhcchHhhhHHhhcCCC-CCccccchhhhccccCcchhhhhhhccccceeEe
Confidence            999999999999999988  5544333322210         0 1 111222222222                      


Q ss_pred             ----hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        251 ----SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       251 ----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                          ....++...-.+ +..|.+..+++.++....+++..+|........-+.+-.-.|...++...++.++.+.|.+..
T Consensus       258 ~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~  336 (536)
T KOG4648|consen  258 VSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET  336 (536)
T ss_pred             eccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence                111111111112 445555666666666666666666555544445555555566677777777777777777655


Q ss_pred             HHHHHHH
Q psy16588        327 SWDILRK  333 (341)
Q Consensus       327 ~~~~l~~  333 (341)
                      +...+.+
T Consensus       337 ~~~~~sr  343 (536)
T KOG4648|consen  337 PKETETR  343 (536)
T ss_pred             chhhhhh
Confidence            5444443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.06  E-value=2.7e-07  Score=73.36  Aligned_cols=185  Identities=16%  Similarity=0.122  Sum_probs=98.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH---HHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA---ELFNNL  193 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l  193 (341)
                      ..+++-|...++.|++++|+..|+.+....|..   ..+...++.++++.++++.|+...++-+.+.|.++   .+++..
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk  114 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK  114 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence            334445555555555555555555555554432   23444555555555555555555555555544432   234444


Q ss_pred             HHHHHHcC--------ChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        194 ALCCFYSQ--------QYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA  264 (341)
Q Consensus       194 a~~~~~~~--------~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  264 (341)
                      |.+++..=        -..+|+..|+..+...|++ ...++...+.              .++..+      +.--..+|
T Consensus       115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~--------------~~~d~L------A~~Em~Ia  174 (254)
T COG4105         115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV--------------KLNDAL------AGHEMAIA  174 (254)
T ss_pred             HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH--------------HHHHHH------HHHHHHHH
Confidence            44433311        1123444444444444443 0011110000              000000      11123467


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLY---ETHYNQAVISNLAGDLQESYNIVKKSLDLH-PGHS  325 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~  325 (341)
                      ..|.+.|.+..|+..++.+++..|+..   +++..+..+|..+|-.++|.+.-. ++..+ |++.
T Consensus       175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p~s~  238 (254)
T COG4105         175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYPDSQ  238 (254)
T ss_pred             HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCCCCc
Confidence            888899999999999999998776543   477888888999999888877654 45444 5543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.04  E-value=1.6e-08  Score=73.32  Aligned_cols=108  Identities=15%  Similarity=0.103  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh---HHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE---THYN  296 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~  296 (341)
                      ...++.-|...+..|+|++|++.|+......|..   ..+...++.+|++.+++++|+..+++.++++|.++.   +++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            4455566666666666666666666666555443   345556666666666666666666666666665543   5555


Q ss_pred             HHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        297 QAVISNLAGD---------------LQESYNIVKKSLDLHPGHSYSWDI  330 (341)
Q Consensus       297 l~~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~  330 (341)
                      .|.++..+..               ..+|...|++.+...|++..+...
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            6666655554               678889999999999988765543

>KOG4648|consensus

Probab=99.04  E-value=1.4e-09  Score=88.81  Aligned_cols=109  Identities=15%  Similarity=0.108  Sum_probs=65.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD  306 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  306 (341)
                      ...|+-|+++|.|++|+.+|.+++...|.++..+.+.+.+|++..+|..|...+..++.++.....+|...+.+-..+|+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            34455566666666666666666666666666666666666666666666666666666655555566666666666666


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        307 LQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       307 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      ..+|.+.++.++.+.|++.+....++.+.
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~  209 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELKKSLARIN  209 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence            66666666666666666555555444443

>KOG1070|consensus

Probab=99.03  E-value=5.2e-08  Score=92.77  Aligned_cols=198  Identities=16%  Similarity=0.077  Sum_probs=171.9

Q ss_pred             chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCc----HHHHHHHHHHHHHcCChhHHHHH
Q psy16588        135 MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYN----AELFNNLALCCFYSQQYDMVVTC  209 (341)
Q Consensus       135 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~~~~~~A~~~  209 (341)
                      -.+..+-|++.+..+|+..-.|..+...+.+.++.++|.+.+++++.. ++..    ..+|..+-++...-|.-+...+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            445677889999999999999999999999999999999999999974 3332    23455555555556777788899


Q ss_pred             HHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       210 ~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                      |++|.++...   ..++..|..+|...+.+++|.++|+.+++...+...+|..++..++++.+-+.|...+.+|++.-|.
T Consensus      1520 FeRAcqycd~---~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYCDA---YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHhcch---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            9999887633   6789999999999999999999999999999888999999999999999999999999999999998


Q ss_pred             --chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        290 --LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       290 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                        +.......+.+.++.|+.+.+...|+-.+.-+|...+.|..+....
T Consensus      1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred             hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence              7778888999999999999999999999999999999997765543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.03  E-value=2.2e-09  Score=70.36  Aligned_cols=70  Identities=17%  Similarity=0.146  Sum_probs=48.7

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      ..+|...+++++|+.++++++.++|+++..|..+|.++..+|++++|...|+++++..|++..+......
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            3556667777777777777777777777777777777777777777777777777777776666555443

>KOG4340|consensus

Probab=99.03  E-value=1.5e-08  Score=81.49  Aligned_cols=192  Identities=15%  Similarity=0.069  Sum_probs=154.9

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      .....+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+...........-...+...-+-+.+.
T Consensus        45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs  124 (459)
T KOG4340|consen   45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS  124 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence            55667899999999999999999999999999888888999999999999999998877654322233455555667778


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .+++..+....++.-.  .+.  .....+.|.+.++.|++++|++-|+.+++...-++-+-++++.++++.|++..|+++
T Consensus       125 e~Dl~g~rsLveQlp~--en~--Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~  200 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPS--ENE--ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH  200 (459)
T ss_pred             cccCcchHHHHHhccC--CCc--cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence            8888888777666421  133  788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh----CCCc-------------------------hhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16588        280 LQAAAAS----SPYL-------------------------YETHYNQAVISNLAGDLQESYNIVK  315 (341)
Q Consensus       280 ~~~al~~----~p~~-------------------------~~~~~~l~~~~~~~g~~~~A~~~~~  315 (341)
                      ..+.++.    .|..                         ..++...+-++++.|+++.|.+.+.
T Consensus       201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence            8887753    2321                         1144456677888999988876654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.02  E-value=1.4e-08  Score=81.27  Aligned_cols=105  Identities=10%  Similarity=0.083  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHH
Q psy16588        156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISH  231 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~  231 (341)
                      .|..+.-++..|+|..|...|..-++..|++   +.++++||.+++.+|+|++|...|..+.+-.|+. ..++.++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            5666666677777777777777777776654   4567777777777777777777777777766666 44667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        232 VAIGISDTRLAIQCLHLALSIDSSHGLSQ  260 (341)
Q Consensus       232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~  260 (341)
                      +...+|+.++|...|+++++..|....+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            77777777777777777777777665443

>KOG4234|consensus

Probab=99.02  E-value=7.8e-09  Score=78.20  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN  228 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  228 (341)
                      .-+-.-|.-++..|+|++|..-|..++.+.|...     ..|.+.|.+++.++.++.|+..+.++++++|..  ..++..
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty--~kAl~R  173 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY--EKALER  173 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh--HHHHHH
Confidence            3455678899999999999999999999998754     467788999999999999999999999999999  899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       229 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      .+.+|.++..|++|++-|++.++.+|....+.-.+..
T Consensus       174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            9999999999999999999999999987665544443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.00  E-value=1.8e-08  Score=80.75  Aligned_cols=108  Identities=14%  Similarity=0.041  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHHHHH
Q psy16588        226 WYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYNQAV  299 (341)
Q Consensus       226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~  299 (341)
                      .|+.+.-++..|+|..|...|..-++..|++   +.+++.||.+++.+|+|++|...|..+.+-.|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            5556666666666666666666666666554   4566666666666666666666666666655544   346677777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        300 ISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       300 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      +...+|+.++|...|+++++..|+...+......
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~  257 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA  257 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            7777777777777777777777776665544433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.00  E-value=1.9e-09  Score=69.66  Aligned_cols=66  Identities=21%  Similarity=0.130  Sum_probs=41.9

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy16588        234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV  299 (341)
Q Consensus       234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  299 (341)
                      +..|++++|+..|++++..+|++..++..++.+|...|++++|...+++++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            355666666666666666666666666666666666666666666666666666666555554443

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.97  E-value=2.4e-07  Score=69.46  Aligned_cols=149  Identities=17%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-ccccchHHHHHHHHHHHHhcCCHHHH
Q psy16588        164 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL-ALNENAADVWYNISHVAIGISDTRLA  242 (341)
Q Consensus       164 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~la~~~~~~g~~~~A  242 (341)
                      .+.=+.+....-..+.+...|.. .-.+.||..+...|++.+|..+|++++.- ..++  ...+..+++..+..+++..|
T Consensus        67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--~a~lLglA~Aqfa~~~~A~a  143 (251)
T COG4700          67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--AAMLLGLAQAQFAIQEFAAA  143 (251)
T ss_pred             HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--HHHHHHHHHHHHhhccHHHH
Confidence            33344555555555555555533 33456677777777777777777776652 3344  66677777777777777777


Q ss_pred             HHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        243 IQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       243 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      ...+++..+.+|.  .++....+|.++...|++.+|...|+.++...|+ +.+...++..+.++|+.++|..-+..
T Consensus       144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            7777777776653  3556666677777777777777777777776664 44555667777777766665554433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.95  E-value=7.1e-09  Score=67.95  Aligned_cols=66  Identities=21%  Similarity=0.102  Sum_probs=42.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH
Q psy16588        230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY  295 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  295 (341)
                      ..+|...+++++|++++++++..+|+++..+..+|.++..+|++++|+..|+++++..|++..+..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            345566666666666666666666666666666666666666666666666666666666555443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.93  E-value=4.7e-07  Score=67.98  Aligned_cols=158  Identities=13%  Similarity=0.053  Sum_probs=133.0

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCChhH
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ-MGLYNAELFNNLALCCFYSQQYDM  205 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~  205 (341)
                      ....+.=|.+....-..+.+...|. ..-.+.+|......|++.+|...|++++. +.-.++..+..+++..+..+++..
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~  142 (251)
T COG4700          64 MALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA  142 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence            3444455666666666666666663 45678899999999999999999999986 566788899999999999999999


Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      |...+++..+.+|....++....+|.++...|++.+|...|+.++...|+ +......+..+..+|+..+|...+....+
T Consensus       143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            99999999999887655788899999999999999999999999998876 67777889999999999998888776654


Q ss_pred             h
Q psy16588        286 S  286 (341)
Q Consensus       286 ~  286 (341)
                      .
T Consensus       222 ~  222 (251)
T COG4700         222 T  222 (251)
T ss_pred             H
Confidence            3

>KOG3081|consensus

Probab=98.92  E-value=1.6e-06  Score=68.98  Aligned_cols=160  Identities=15%  Similarity=0.059  Sum_probs=93.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh---
Q psy16588        159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG---  235 (341)
Q Consensus       159 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~---  235 (341)
                      -+.+|...|++++|++.....     .+.++...-..++.+..+++-|...++++..++.+.    .+..+|..+..   
T Consensus       114 aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~----tLtQLA~awv~la~  184 (299)
T KOG3081|consen  114 AAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA----TLTQLAQAWVKLAT  184 (299)
T ss_pred             hhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH----HHHHHHHHHHHHhc
Confidence            344555555555555554441     233344444455555556666666666655554322    33334444332   


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH-H
Q psy16588        236 -ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN-I  313 (341)
Q Consensus       236 -~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~  313 (341)
                       .+.+.+|.-+|++.-...+..+..+..++.++..+|+|++|...++.++..++++++++.++..+-...|...++.. .
T Consensus       185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence             24466677777776666666666777777777777777777777777777777777777777777666766655433 4


Q ss_pred             HHHHHhcCCCCHHH
Q psy16588        314 VKKSLDLHPGHSYS  327 (341)
Q Consensus       314 ~~~al~~~p~~~~~  327 (341)
                      +.+....+|+++-.
T Consensus       265 l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  265 LSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHhcCCcchHH
Confidence            44444556666543

>KOG1586|consensus

Probab=98.90  E-value=5.3e-07  Score=70.12  Aligned_cols=182  Identities=15%  Similarity=0.066  Sum_probs=122.2

Q ss_pred             cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----C--CcHHHHHHHHHHHHHcCChhH
Q psy16588        132 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG----L--YNAELFNNLALCCFYSQQYDM  205 (341)
Q Consensus       132 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~~~~~~  205 (341)
                      .+++++|.++|.++-              ..|...+++..|-..|.++-...    .  +-...|...+.+|. ..+..+
T Consensus        27 ~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~e   91 (288)
T KOG1586|consen   27 SNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEE   91 (288)
T ss_pred             CcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHH
Confidence            457788888777763              33444455555555555554321    1  12334445555554 458999


Q ss_pred             HHHHHHHHHhhcccc----chHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHH
Q psy16588        206 VVTCFERALSLALNE----NAADVWYNISHVAIGI-SDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIE  274 (341)
Q Consensus       206 A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~  274 (341)
                      |+.++++++++..+.    .....+..+|.+|... .++++|+.+|+++-+.....      -..+...+..-..+++|.
T Consensus        92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~  171 (288)
T KOG1586|consen   92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS  171 (288)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999998886554    1133456788888654 88999999999987664322      234455566667889999


Q ss_pred             HHHHHHHHHHHhCCCchh-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        275 RASTYLQAAAASSPYLYE-------THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       275 ~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  328 (341)
                      +|+..|++.....-++..       .++.-|.|+....+.-.+...+++..+++|...+.+
T Consensus       172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence            999999998776554432       344567777777888888888899999999876654

>KOG2047|consensus

Probab=98.88  E-value=7.9e-07  Score=78.81  Aligned_cols=200  Identities=12%  Similarity=0.068  Sum_probs=160.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY----------  185 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----------  185 (341)
                      ..|..+|..|...|+.+.|..+|+++++..-.    -..+|...|..-....+++.|+++.+++...-..          
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            56888999999999999999999999886532    3578889999999999999999999998764211          


Q ss_pred             --------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC
Q psy16588        186 --------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID--SS  255 (341)
Q Consensus       186 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~  255 (341)
                              +..+|..++......|-++.....|++.+.+.--.  +....|.|..+....-++++.+.|++.+.+.  |.
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT--Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~  545 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT--PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN  545 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence                    23467888888888999999999999999998888  9999999999999999999999999999987  45


Q ss_pred             CHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        256 HGLSQNNLAVLE---AREGHIERASTYLQAAAASSPYLY--ETHYNQAVISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       256 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                      -.++|...-..+   +.-.+.+.|...|+++++..|...  ..+..++..-.+-|--..|+..|+++-..-
T Consensus       546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v  616 (835)
T KOG2047|consen  546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV  616 (835)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence            556665433332   223478999999999999887322  255666777777788888888888766543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.88  E-value=1.5e-07  Score=68.32  Aligned_cols=121  Identities=12%  Similarity=0.076  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYN  228 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~  228 (341)
                      +..++.-|...+..|+|++|++.|+.+....|..   ..+...++.+|+..+++++|+..+++-++++|.+ ....+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            4455666666666666666666666666555432   3455666666666666666666666666666665 33445555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       229 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      .|.+++.+..     ..+...+..+              ...+...+|...|++.+...|++..
T Consensus        90 ~gL~~~~~~~-----~~~~~~~~~d--------------rD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   90 RGLSYYEQDE-----GSLQSFFRSD--------------RDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHhh-----hHHhhhcccc--------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence            5555555433     0111111000              0011255778888888888887654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.87  E-value=3.7e-08  Score=73.76  Aligned_cols=60  Identities=12%  Similarity=0.105  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        275 RASTYLQAAAASSPYLYETHYNQAVISNLAG-----------DLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       275 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      +|+.-|++++.++|+..+++.++|.+|...+           .|++|..+|+++.+.+|++...+..|...
T Consensus        53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   53 DAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3444444444555555555555555544432           24556666666666666666655554433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2047|consensus

Probab=98.86  E-value=2e-06  Score=76.37  Aligned_cols=209  Identities=11%  Similarity=0.098  Sum_probs=165.3

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR-DAT-----CMEAIACIGVNHFYNDQPEVALLFYRRLLQM  182 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  182 (341)
                      +..+|.+.   ..|..  ++-+..|+..+-+..|.++++. +|.     -...|..+|..|...|+.+.|...|+++.+.
T Consensus       342 LRQn~~nV---~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V  416 (835)
T KOG2047|consen  342 LRQNPHNV---EEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV  416 (835)
T ss_pred             HhcCCccH---HHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence            34444444   55555  5666788899999999998763 554     3467889999999999999999999999986


Q ss_pred             CCC----cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----------------chHHHHHHHHHHHHhcCCHHHH
Q psy16588        183 GLY----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----------------NAADVWYNISHVAIGISDTRLA  242 (341)
Q Consensus       183 ~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A  242 (341)
                      .-.    -..+|...|..-....+++.|+.+.+++.......                ....+|..++......|-++.-
T Consensus       417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest  496 (835)
T KOG2047|consen  417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST  496 (835)
T ss_pred             CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence            432    35788899999999999999999999997763221                1145677888888889999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHH---cCCHHHHHHHHHHH
Q psy16588        243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS--PYLYETHYNQAVISNL---AGDLQESYNIVKKS  317 (341)
Q Consensus       243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a  317 (341)
                      ...|++.+.+.--.+....|.|..+....-++++.+.|++.+.+.  |.-.++|..+-.-+.+   --+.+.|..+|+++
T Consensus       497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa  576 (835)
T KOG2047|consen  497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA  576 (835)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            999999999988889999999999999999999999999999886  4445566554333322   24788999999999


Q ss_pred             HhcCC
Q psy16588        318 LDLHP  322 (341)
Q Consensus       318 l~~~p  322 (341)
                      ++..|
T Consensus       577 L~~Cp  581 (835)
T KOG2047|consen  577 LDGCP  581 (835)
T ss_pred             HhcCC
Confidence            99877

>KOG3081|consensus

Probab=98.86  E-value=3.4e-06  Score=67.12  Aligned_cols=162  Identities=17%  Similarity=0.041  Sum_probs=111.4

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY--  199 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--  199 (341)
                      ...-+.++...|++++|.+.....     .+.++...-..++.++.+++-|.+.++++.+.+.+  ..+..||..+..  
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la  183 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLA  183 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHh
Confidence            334457777788888887776663     24555666666777777888888888877776543  333444444443  


Q ss_pred             --cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16588        200 --SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       200 --~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  277 (341)
                        .+++.+|.-+|+..-+..+..  +......+.|++.+|+|++|...++.++..++.+++++.++..+-...|...++.
T Consensus       184 ~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  184 TGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             ccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence              346777888888877766666  7778888888888888888888888888888888888888877777777765554


Q ss_pred             H-HHHHHHHhCCCchh
Q psy16588        278 T-YLQAAAASSPYLYE  292 (341)
Q Consensus       278 ~-~~~~al~~~p~~~~  292 (341)
                      . .+.+....+|.++.
T Consensus       262 ~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  262 ERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHhcCCcchH
Confidence            4 44444555566543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.85  E-value=2e-08  Score=86.34  Aligned_cols=69  Identities=16%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        217 ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS---QNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      +|++  +..|+++|.+|+..|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        71 dP~~--a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         71 DVKT--AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            6777  9999999999999999999999999999999999854   9999999999999999999999999973

>KOG2796|consensus

Probab=98.85  E-value=2.8e-06  Score=67.44  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh----ccccchHHHHHHH
Q psy16588        155 AIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQQYDMVVTCFERALSL----ALNENAADVWYNI  229 (341)
Q Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~l  229 (341)
                      +.+.+..++.-.|+|.-++..+.+.++.+ |..+.....||.+.++.|+.+.|..+|++.-+.    +.......+..+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            34455666666677777777777777666 455666667777777777777777777644322    1111224455566


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16588        230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      +.+|.-.+++.+|...|.+++..+|.++.+.++.+.++.-.|+..+|++.++.+++..|..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            6666667777777777777777777777777777777777777777777777777776653

>KOG1941|consensus

Probab=98.84  E-value=8.1e-08  Score=79.32  Aligned_cols=195  Identities=13%  Similarity=0.096  Sum_probs=152.4

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----cHHHHHHHH
Q psy16588        126 AKIFEGLNNMPMSVKYYKLILKRD----AT--CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-----NAELFNNLA  194 (341)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~l~~~----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la  194 (341)
                      ..+...+|.|++++.+--..+...    ..  ..+++.+++..+...-++.+++.+-+-.+.+...     -..+...++
T Consensus        50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~  129 (518)
T KOG1941|consen   50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMG  129 (518)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence            356667777877766544443322    11  2466788999999999999999988887775332     235677799


Q ss_pred             HHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----C------HHHH
Q psy16588        195 LCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS----H------GLSQ  260 (341)
Q Consensus       195 ~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~------~~~~  260 (341)
                      ..+...+.++++++.|++++++...+    ....++..+|..|....++++|.-+..++.++-..    +      ..++
T Consensus       130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l  209 (518)
T KOG1941|consen  130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL  209 (518)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence            99999999999999999999986544    33467889999999999999999999999876421    2      3467


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCC------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        261 NNLAVLEAREGHIERASTYLQAAAASSP------YLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      +.++..+..+|+..+|.++.+++.++.-      ........+|++|...|+.+.|..-|+++...
T Consensus       210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            7899999999999999999999987642      22335667999999999999999999998865

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.84  E-value=6.2e-08  Score=83.34  Aligned_cols=70  Identities=27%  Similarity=0.283  Sum_probs=66.7

Q ss_pred             cCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16588        182 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD---VWYNISHVAIGISDTRLAIQCLHLALSID  253 (341)
Q Consensus       182 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~  253 (341)
                      .+|+++..++++|..|+..|+|++|+..|+++++++|++  ..   +|+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~--aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP--DEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999  74   59999999999999999999999999973

>KOG2796|consensus

Probab=98.81  E-value=9.9e-07  Score=69.94  Aligned_cols=186  Identities=16%  Similarity=0.208  Sum_probs=149.9

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD  204 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  204 (341)
                      -+.+....|+..+.+.-+......       ...+..........+..++.+++-+.      .+.+.+..++...|.|.
T Consensus       128 hAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~  194 (366)
T KOG2796|consen  128 HAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYV  194 (366)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhh
Confidence            356666778888887776665432       12223333344445778888887654      67788899999999999


Q ss_pred             HHHHHHHHHHhhc-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHhCCHHHHH
Q psy16588        205 MVVTCFERALSLA-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSI----D--SSHGLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       205 ~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      -++..+.+.++.+ |..  +.....+|.+.++.|+.+.|..+|+..-+.    +  .....+..+.+.++.-.+++..|.
T Consensus       195 iS~d~~~~vi~~~~e~~--p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~  272 (366)
T KOG2796|consen  195 LSVDAYHSVIKYYPEQE--PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAH  272 (366)
T ss_pred             hhHHHHHHHHHhCCccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHH
Confidence            9999999999988 455  888899999999999999999999954433    2  334567788889999999999999


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  325 (341)
                      ..|.+++..+|.++.+..+.+.|+...|+..+|++.++.++...|...
T Consensus       273 r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  273 RFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999999999999999999863

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.80  E-value=1.9e-06  Score=68.66  Aligned_cols=171  Identities=16%  Similarity=0.154  Sum_probs=118.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWY  227 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~  227 (341)
                      .+..|+.-|....+.|++++|+..|+.+....|..   ..+...++..+++.+++++|+...++-+.+.|.+ ....+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            46778888888888888888888888888877654   4577788888888888888888888888888877 4455667


Q ss_pred             HHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy16588        228 NISHVAIGIS--------DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV  299 (341)
Q Consensus       228 ~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  299 (341)
                      ..|.+++..-        -..+|+..|++.+...|++.-+-.....+           ..+...+      ..--...|.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~Iar  175 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIAR  175 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHH
Confidence            7777664431        23456666777777777654321111110           1111111      112245788


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        300 ISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       300 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .|.+.|.+..|+..++.+++-.|+.......|..+...+.
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~  215 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYY  215 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            9999999999999999999999988777777766665544

>KOG4555|consensus

Probab=98.77  E-value=8.8e-07  Score=62.42  Aligned_cols=96  Identities=21%  Similarity=0.145  Sum_probs=55.7

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH----GLSQNNLAVL  266 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~  266 (341)
                      ..-|..+...|+.+.|++.|.+++.+.|..  +.+|++.++.+.-+|+.++|+.-+++++++....    -.++...|.+
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            344555555666666666666666666666  6666666666666666666666666666654332    2344555666


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCC
Q psy16588        267 EAREGHIERASTYLQAAAASSP  288 (341)
Q Consensus       267 ~~~~g~~~~A~~~~~~al~~~p  288 (341)
                      |..+|+-+.|...|+.+-++..
T Consensus       125 yRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  125 YRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHhCchHHHHHhHHHHHHhCC
Confidence            6666666666666666555443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.77  E-value=2.4e-08  Score=66.32  Aligned_cols=64  Identities=23%  Similarity=0.338  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhc---c-cc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLA---L-NE-NAADVWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                      .++.++|.+|...|++++|+.+|++++++.   + .. ....++.++|.++...|++++|+++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344444444444444444444444444331   0 00 1133444444444444444444444444443

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.75  E-value=2.5e-08  Score=66.23  Aligned_cols=63  Identities=27%  Similarity=0.289  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSID---S----SHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      ..++.++|.+|..+|++++|+.+|++++++.   +    ....++.++|.++...|++++|+.+++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4555666666666666666666666665431   1    1133445555555555555555555555544

...

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.75  E-value=1.9e-06  Score=74.63  Aligned_cols=201  Identities=15%  Similarity=0.050  Sum_probs=131.3

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------------------
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-------------------  185 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------------------  185 (341)
                      +.....+..+...-++.-+++++.+|+.+.+|..|+.-.  .....+|+++|+++++....                   
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~  251 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH  251 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence            335566788899999999999999999999998887632  23467788888887753210                   


Q ss_pred             ------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHH
Q psy16588        186 ------NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI-DSSHGL  258 (341)
Q Consensus       186 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~  258 (341)
                            ...+...+|.|..+.|+.++|++.++..++..|......++.++..++...+.|.++...+.+.=++ -|..+.
T Consensus       252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt  331 (539)
T PF04184_consen  252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT  331 (539)
T ss_pred             ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence                  0234567888888888888888888888887765434678888888888888888888888875433 245555


Q ss_pred             HHHHHHHHHHHh-CC---------------HHHHHHHHHHHHHhCCCchhHHHHHHH------HHHHcCCHHHHHHHHHH
Q psy16588        259 SQNNLAVLEARE-GH---------------IERASTYLQAAAASSPYLYETHYNQAV------ISNLAGDLQESYNIVKK  316 (341)
Q Consensus       259 ~~~~l~~~~~~~-g~---------------~~~A~~~~~~al~~~p~~~~~~~~l~~------~~~~~g~~~~A~~~~~~  316 (341)
                      ..+.-+....+. ++               -..|++.+.+|++.+|.-+..+..+-.      -+.+.|+ .||+.+---
T Consensus       332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~  410 (539)
T PF04184_consen  332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFF  410 (539)
T ss_pred             HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHH
Confidence            555544433221 11               134667888888888876654433211      1333444 555555444


Q ss_pred             HHhcCCCCHHHH
Q psy16588        317 SLDLHPGHSYSW  328 (341)
Q Consensus       317 al~~~p~~~~~~  328 (341)
                      .+..-.+-+.+.
T Consensus       411 hL~hWk~veGAL  422 (539)
T PF04184_consen  411 HLQHWKRVEGAL  422 (539)
T ss_pred             HHHHHhcCHhHH
Confidence            444433333333

The molecular function of this protein is uncertain.

>KOG2053|consensus

Probab=98.74  E-value=9.6e-06  Score=74.71  Aligned_cols=211  Identities=13%  Similarity=0.065  Sum_probs=114.0

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  188 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  188 (341)
                      +...|+.+   -+...-|.++.+.|+.++|..+++..-...+++...+-.+-.+|..++++++|..+|++++..+|. .+
T Consensus        36 lkk~Pn~~---~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-ee  111 (932)
T KOG2053|consen   36 LKKHPNAL---YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EE  111 (932)
T ss_pred             HHHCCCcH---HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HH
Confidence            33455544   344444566666666666665555554455555556666666666666666666666666666666 55


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHH---------HHHHHHHHHHhcC-CCCH-
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR---------LAIQCLHLALSID-SSHG-  257 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~---------~A~~~~~~al~~~-p~~~-  257 (341)
                      ..+.+-.+|.+.+.|.+=.+.--+..+..|+. ....|..+..++......+         -|...+++.++.. +-.. 
T Consensus       112 ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~  190 (932)
T KOG2053|consen  112 LLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE  190 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence            55555555555555554433333333344444 1223333333333322222         2334444444443 1111 


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH-HhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAA-ASS-PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      .-....-.++..+|++++|...+..-+ +.. +.+...-..-...+...+++.+-.+...+.+...+++
T Consensus       191 aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  191 AEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            111122345567788888888884332 333 3333333445667777888888888888888888887

>KOG4555|consensus

Probab=98.74  E-value=1e-06  Score=62.08  Aligned_cols=98  Identities=15%  Similarity=0.100  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHH
Q psy16588        157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAI  234 (341)
Q Consensus       157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~  234 (341)
                      -..|......|+.+.|++.|.+++.+.|..+.+|++.+..+..+|+.++|++-+++++++....  ..-.++...|.+|.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            3456666777888888888888888888888888888888888888888888888888875444  23456777788888


Q ss_pred             hcCCHHHHHHHHHHHHhcCC
Q psy16588        235 GISDTRLAIQCLHLALSIDS  254 (341)
Q Consensus       235 ~~g~~~~A~~~~~~al~~~p  254 (341)
                      .+|+-+.|..-|+.+-++..
T Consensus       127 l~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HhCchHHHHHhHHHHHHhCC
Confidence            88888888888877766543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.69  E-value=2.6e-06  Score=65.74  Aligned_cols=129  Identities=16%  Similarity=0.038  Sum_probs=108.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  231 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~  231 (341)
                      .+..++..|..|-..|-+.-|.--|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|...++++|..  --+..+.|.
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y--~Ya~lNRgi  141 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--NYAHLNRGI  141 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--hHHHhccce
Confidence            456678889999999999999999999999999999999999999999999999999999999999999  889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      .++.-|++.-|.+-+.+-...+|+++---..+-.. ...-+..+|...+.+-
T Consensus       142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR  192 (297)
T COG4785         142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQR  192 (297)
T ss_pred             eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHH
Confidence            99999999999999999999999987422222111 2233566666655443

>KOG2610|consensus

Probab=98.68  E-value=3.8e-06  Score=69.02  Aligned_cols=170  Identities=9%  Similarity=-0.007  Sum_probs=128.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-cccc-chHHHHHHHHHHH
Q psy16588        156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL-ALNE-NAADVWYNISHVA  233 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~-~~~~~~~~la~~~  233 (341)
                      ...-+.+....|++-+|-..+++.++..|.+..++..--..++..|+...-...+++.+.. +++. ....+.-.++..+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3344556667788888888889999999988888888888888888888888888888776 4333 2244556677788


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHcCCHHH
Q psy16588        234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL----YETHYNQAVISNLAGDLQE  309 (341)
Q Consensus       234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~  309 (341)
                      ...|-|++|.+..++++++++.+.-+...++.++...|++.++.++..+.-..-...    ...|...+.++..-+.|+.
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~  265 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK  265 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence            888999999999999999999988888888999999999999988887653321111    0134456778888889999


Q ss_pred             HHHHHHHHH--hcCCCCH
Q psy16588        310 SYNIVKKSL--DLHPGHS  325 (341)
Q Consensus       310 A~~~~~~al--~~~p~~~  325 (341)
                      |+..|.+-+  ++..++.
T Consensus       266 aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  266 ALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHHHHHHhhccch
Confidence            999888765  4445554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.67  E-value=1.8e-06  Score=72.31  Aligned_cols=133  Identities=17%  Similarity=0.138  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCChhHHHHHHHHHHhhccccchHHHHHHHHHHH
Q psy16588        155 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-SQQYDMVVTCFERALSLALNENAADVWYNISHVA  233 (341)
Q Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~  233 (341)
                      +|..+.......+..+.|...|.++++..+....+|...|.+.+. .++.+.|..+|+.+++..|.+  ...|..+...+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--PDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence            445555555555556666666666665444555666666666444 344444666666666666666  66666666666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        234 IGISDTRLAIQCLHLALSIDSSHG---LSQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       234 ~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                      ...|+.+.|..+|++++..-+...   .+|......-...|+.+......+++.+..|+
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            666666666666666666544433   35555555555666666666666666665555

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.66  E-value=2.1e-06  Score=71.93  Aligned_cols=137  Identities=13%  Similarity=0.160  Sum_probs=105.5

Q ss_pred             hhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      .|+.+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            466666777777778889999999886666677888888888666 5666669999999999888888888888888888


Q ss_pred             cCChhHHHHHHHHHHhhccccc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        200 SQQYDMVVTCFERALSLALNEN-AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG  257 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  257 (341)
                      .++.+.|..+|++++..-+... ...+|......-...|+.+...++.+++.+..|.+.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            8999999999999988866652 346788888888888888888888888888887743

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.64  E-value=4.6e-07  Score=67.95  Aligned_cols=103  Identities=17%  Similarity=0.014  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16588        169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHL  248 (341)
Q Consensus       169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (341)
                      ++.|.+.++.....+|.+.+.+++-|..+..+.++...-+                          ...-+++|+.-|++
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~e--------------------------s~~miedAisK~ee   60 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPE--------------------------SKKMIEDAISKFEE   60 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHH--------------------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcch--------------------------HHHHHHHHHHHHHH
Confidence            4566666666666777777777766666665433211000                          00112344444555


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCchhHHHHH
Q psy16588        249 ALSIDSSHGLSQNNLAVLEAREGH-----------IERASTYLQAAAASSPYLYETHYNQ  297 (341)
Q Consensus       249 al~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l  297 (341)
                      ++.++|+...+++++|.+|..++.           |++|..+|+++...+|++...+..|
T Consensus        61 AL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   61 ALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             HHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            555555555555555555544322           5666677777777777665544433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.63  E-value=4.7e-06  Score=72.25  Aligned_cols=165  Identities=13%  Similarity=0.055  Sum_probs=122.2

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----------------------
Q psy16588        164 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----------------------  220 (341)
Q Consensus       164 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------------------  220 (341)
                      ....+.+.-++.-++|++++|+.+.+|..|+.-.  ..-..++.++|+++++.....                       
T Consensus       179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~  256 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN  256 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence            4557788889999999999999999998887642  234567777777776651110                       


Q ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCchhHHHHH
Q psy16588        221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERASTYLQAAAASS-PYLYETHYNQ  297 (341)
Q Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  297 (341)
                      ....+...+|.|..+.|+.++|++.+++.++..|.  +..+..++..++...+.|.++...+.+.-++. |++....+.-
T Consensus       257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa  336 (539)
T PF04184_consen  257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA  336 (539)
T ss_pred             hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence            11334577999999999999999999999998775  46689999999999999999999999865442 4555555544


Q ss_pred             HHHHHH-cCC---------------HHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        298 AVISNL-AGD---------------LQESYNIVKKSLDLHPGHSYSWDI  330 (341)
Q Consensus       298 ~~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~  330 (341)
                      +.+..+ .++               -..|.+.+.+|++.+|.-+.....
T Consensus       337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe  385 (539)
T PF04184_consen  337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE  385 (539)
T ss_pred             HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence            444322 121               134778999999999988775433

The molecular function of this protein is uncertain.

>KOG2610|consensus

Probab=98.61  E-value=3.2e-06  Score=69.48  Aligned_cols=156  Identities=13%  Similarity=0.003  Sum_probs=132.3

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHcCC
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-GLYN---AELFNNLALCCFYSQQ  202 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~  202 (341)
                      .+....|++.+|-...++.++..|.+.-++..--..++.+|+.+.-...+++.+.. +++.   ..+.-.++..+...|-
T Consensus       111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence            45667899999999999999999999999888888999999999999999999877 6555   5566778889999999


Q ss_pred             hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhCCHHHHHH
Q psy16588        203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH----GLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      |++|.+.-++++++++.+  ..+...++.++...|++.++.++..+--..-...    ..-|...+.++..-+.|+.|++
T Consensus       191 y~dAEk~A~ralqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             chhHHHHHHhhccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            999999999999999999  8899999999999999999999887743221111    2345567888889999999999


Q ss_pred             HHHHHH
Q psy16588        279 YLQAAA  284 (341)
Q Consensus       279 ~~~~al  284 (341)
                      .|.+-+
T Consensus       269 IyD~ei  274 (491)
T KOG2610|consen  269 IYDREI  274 (491)
T ss_pred             HHHHHH
Confidence            998765

>KOG1585|consensus

Probab=98.55  E-value=3.2e-05  Score=60.90  Aligned_cols=196  Identities=11%  Similarity=-0.006  Sum_probs=139.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCcHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM------EAIACIGVNHFYNDQPEVALLFYRRLLQMG-----LYNAE  188 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~  188 (341)
                      ..+..-+..|....+|++|...+.++.+-..++.      .++-..+........+.++..+|+++..+.     |+...
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            4555667788889999999999999987655432      334566777778889999999999998763     44443


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSI------DSSHGL  258 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~  258 (341)
                      .-...+--....-++++|+.+|++++.+-...    ...+.+...+.++.....+++|-..+.+-...      .++...
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k  191 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK  191 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence            33344444556788999999999998875443    33566777888999999999988877764332      233344


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASS----PYLYETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      .+.....+|....+|..|..+++...++.    +++..+..+|-..| ..|+.++..+.+.-
T Consensus       192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~s  252 (308)
T KOG1585|consen  192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSS  252 (308)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcC
Confidence            56666677777789999999999977653    44555666766655 46777776665543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.54  E-value=7.4e-05  Score=62.93  Aligned_cols=167  Identities=12%  Similarity=-0.010  Sum_probs=103.9

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ..++.-+....-.|+++.|.+-|+.++.. |+ ..-.+..|-.--...|..+.|+.+-+++....|.-+.++...-...+
T Consensus       121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~  199 (531)
T COG3898         121 LIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARC  199 (531)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence            44555566777788888888888887652 32 11112222223346688888888888888888888888877777778


Q ss_pred             HcCChhHHHHHHHHHHhhcccc------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16588        199 YSQQYDMVVTCFERALSLALNE------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH  272 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  272 (341)
                      ..|+|+.|+++.+......--.      .....+...+.... ..+...|...-.+++++.|+....-..-+..+++.|+
T Consensus       200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~  278 (531)
T COG3898         200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGN  278 (531)
T ss_pred             hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence            8888888888877655432111      01112222222222 2345666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHhCC
Q psy16588        273 IERASTYLQAAAASSP  288 (341)
Q Consensus       273 ~~~A~~~~~~al~~~p  288 (341)
                      ..++-..++.+.+..|
T Consensus       279 ~rKg~~ilE~aWK~eP  294 (531)
T COG3898         279 LRKGSKILETAWKAEP  294 (531)
T ss_pred             hhhhhhHHHHHHhcCC
Confidence            6666666666665554

>KOG4642|consensus

Probab=98.49  E-value=9.2e-07  Score=69.06  Aligned_cols=94  Identities=18%  Similarity=0.219  Sum_probs=77.8

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                      ..-|+.++....|+.|+.+|.+++.++|..  +..|.+.+.++++..+|+.+..-.++++++.|+....++.+|......
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~--~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s   91 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTV--ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS   91 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCc--chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence            345667777778888888888888888888  888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy16588        271 GHIERASTYLQAAAAS  286 (341)
Q Consensus       271 g~~~~A~~~~~~al~~  286 (341)
                      ..|++|+..+.++..+
T Consensus        92 ~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   92 KGYDEAIKVLQRAYSL  107 (284)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            8888888888888654

>KOG3617|consensus

Probab=98.47  E-value=2e-05  Score=72.18  Aligned_cols=186  Identities=13%  Similarity=0.094  Sum_probs=126.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHH------------HHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYY------------KLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA  187 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~------------~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  187 (341)
                      ..|-+++....+..+.+-|.-++            +++.+ +++  +.-...+.+...+|..++|+.+|++.-..+    
T Consensus       758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D----  830 (1416)
T KOG3617|consen  758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD----  830 (1416)
T ss_pred             HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence            34666776666666666555443            33333 222  333455666778899999999999875532    


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCC--
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA----------LSIDSS--  255 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------l~~~p~--  255 (341)
                          .|-..|...|.|++|.++-+.--.++    ....|++.+.-+...++.+.|+++|+++          +..+|.  
T Consensus       831 ----LlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~  902 (1416)
T KOG3617|consen  831 ----LLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI  902 (1416)
T ss_pred             ----HHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence                55667778888888877765432222    2457788888888888888888888874          222232  


Q ss_pred             --------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------------------CCCchhHHHHHHHHHHHcCC
Q psy16588        256 --------HGLSQNNLAVLEAREGHIERASTYLQAAAAS---------------------SPYLYETHYNQAVISNLAGD  306 (341)
Q Consensus       256 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~~~~~l~~~~~~~g~  306 (341)
                              +...|...|..+...|+.+.|+.+|..+-..                     ...+..+.+.+|..|...|+
T Consensus       903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~  982 (1416)
T KOG3617|consen  903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD  982 (1416)
T ss_pred             HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence                    3456666777777888888888888776331                     23344578889999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy16588        307 LQESYNIVKKSLDL  320 (341)
Q Consensus       307 ~~~A~~~~~~al~~  320 (341)
                      ..+|+.+|.++...
T Consensus       983 v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  983 VVKAVKFFTRAQAF  996 (1416)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887543

>KOG4642|consensus

Probab=98.47  E-value=1.4e-06  Score=67.98  Aligned_cols=95  Identities=23%  Similarity=0.266  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16588        156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG  235 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~  235 (341)
                      +..-|..++....|..|+.+|.+++.++|..+..|.+-+.++++..+++.+..-.++++++.|+.  ...++.+|.++..
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~   90 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQ   90 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHh
Confidence            34567788888999999999999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             cCCHHHHHHHHHHHHhc
Q psy16588        236 ISDTRLAIQCLHLALSI  252 (341)
Q Consensus       236 ~g~~~~A~~~~~~al~~  252 (341)
                      ...|++|+..+.++..+
T Consensus        91 s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   91 SKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             hccccHHHHHHHHHHHH
Confidence            99999999999999665

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.47  E-value=0.00014  Score=61.29  Aligned_cols=196  Identities=13%  Similarity=-0.033  Sum_probs=147.8

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCC
Q psy16588        126 AKIFEGLNNMPMSVKYYKLILKRDATCME--AIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQ  202 (341)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~  202 (341)
                      |.+....|+-..|.++-.+.-++-..+.+  ++..-+..-...|+++.|.+-|+.++. +|+. ..-+..|-.-....|.
T Consensus        91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Ga  169 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGA  169 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhccc
Confidence            45666788889999998887755444444  444556677778999999999998875 3332 2223333344456899


Q ss_pred             hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCHH---HHHHHHHHH-HHhCCHHH
Q psy16588        203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID---SSHGL---SQNNLAVLE-AREGHIER  275 (341)
Q Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~---~~~~l~~~~-~~~g~~~~  275 (341)
                      .+.|+.+-+++....|.-  ..++...-......|+|+.|+++.+......   ++..+   +-..-+... ....+...
T Consensus       170 reaAr~yAe~Aa~~Ap~l--~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~  247 (531)
T COG3898         170 REAARHYAERAAEKAPQL--PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS  247 (531)
T ss_pred             HHHHHHHHHHHHhhccCC--chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence            999999999999999998  8888888888899999999999988765432   22211   111112221 23356888


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      |...-.+++++.|+...+-..-+..+++.|+..++-..++.+.+..|.-
T Consensus       248 Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         248 ARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence            9999999999999999988889999999999999999999999998854

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.46  E-value=5.7e-07  Score=52.08  Aligned_cols=41  Identities=20%  Similarity=0.367  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      ++..+|.+|..+|++++|++.|+++++.+|+++.+|..+++
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45555666666666666666666666666666665555543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.41  E-value=0.00015  Score=62.15  Aligned_cols=172  Identities=15%  Similarity=0.059  Sum_probs=124.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCChhHHHHHHHHHH-hhccccchH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQM----GLYNAELFNNLALCCFY---SQQYDMVVTCFERAL-SLALNENAA  223 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al-~~~~~~~~~  223 (341)
                      .+++..++-..|....+|+.-+++.+..-..    .++...+.+.+|.++.+   .|+.++|+..+..++ ...+.+  +
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--~  217 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--P  217 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC--h
Confidence            4567778888899999999999998887666    55677788889999988   999999999999954 444555  8


Q ss_pred             HHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-Hh-------
Q psy16588        224 DVWYNISHVAIGI---------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA-AS-------  286 (341)
Q Consensus       224 ~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~-------  286 (341)
                      +.+..+|.+|...         ...++|+..|.++++.+|+. ..-.|++.++...|...+....+++.. .+       
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k  296 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK  296 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence            8999999888442         34789999999999999644 344556666666665333332222221 11       


Q ss_pred             ----CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        287 ----SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       287 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                          .-.+......+..+..-.|++++|..++++++.+.|..-.
T Consensus       297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence                1112224456778888899999999999999999765433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.41  E-value=9.1e-07  Score=51.20  Aligned_cols=40  Identities=28%  Similarity=0.121  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  298 (341)
                      ++..+|.+|...|++++|+..|+++++.+|++..+|..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4455555555555555555555555555555555555544

>KOG0376|consensus

Probab=98.40  E-value=8.1e-07  Score=76.43  Aligned_cols=105  Identities=12%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16588        231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES  310 (341)
Q Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  310 (341)
                      ..++..+.|+.|+..|.++++++|+++..+.+.+.++.+.+++..|+.-+.++++.+|....+|+..|.+....+++.+|
T Consensus        12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A   91 (476)
T KOG0376|consen   12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA   91 (476)
T ss_pred             hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        311 YNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       311 ~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      ...|++...+.|+.+.+...+..+.
T Consensus        92 ~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   92 LLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            4444444444444444444444443

>KOG3617|consensus

Probab=98.37  E-value=0.00014  Score=67.01  Aligned_cols=202  Identities=16%  Similarity=0.115  Sum_probs=131.2

Q ss_pred             CchhHhhhcHHHHHHHcCCchHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHhcCChHHHHHH
Q psy16588        116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLI----------LKRDAT----------CMEAIACIGVNHFYNDQPEVALLF  175 (341)
Q Consensus       116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------l~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~  175 (341)
                      -.+...+++.+..+...++.+.|+++|+++          +..+|.          +...|...|......|+.+.|+.+
T Consensus       855 iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~  934 (1416)
T KOG3617|consen  855 IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSF  934 (1416)
T ss_pred             eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHH
Confidence            334456677777777788888888888874          333443          344566778888888999999998


Q ss_pred             HHHHHHc---------------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh------ccccch-HHH--
Q psy16588        176 YRRLLQM---------------------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL------ALNENA-ADV--  225 (341)
Q Consensus       176 ~~~al~~---------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~-~~~--  225 (341)
                      |..+-..                     ...+..+.+.+|..|...|++.+|+..|.++-..      ...+.. ...  
T Consensus       935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen  935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred             HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            8877432                     2344556788999999999999999888776443      222200 111  


Q ss_pred             ---------HHHHHHHHHhcC-CHHHHHHHHHHH------Hh-----------------cCC-CCHHHHHHHHHHHHHhC
Q psy16588        226 ---------WYNISHVAIGIS-DTRLAIQCLHLA------LS-----------------IDS-SHGLSQNNLAVLEAREG  271 (341)
Q Consensus       226 ---------~~~la~~~~~~g-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~l~~~~~~~g  271 (341)
                               ....+..|...| ..+.|+.+|.++      ++                 ++| .++..+...+..+....
T Consensus      1015 lal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred             HHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence                     122233444444 556666655542      11                 122 35777788888888888


Q ss_pred             CHHHHHHHHHHH------HHhC----------------CCc---------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        272 HIERASTYLQAA------AASS----------------PYL---------YETHYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       272 ~~~~A~~~~~~a------l~~~----------------p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                      +|++|...+-.+      +.+.                |..         ..++..+|.++.++|.|..|-+-|.++
T Consensus      1095 qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            999988765444      3321                111         126778899999999998888777665

>KOG0545|consensus

Probab=98.32  E-value=8.7e-06  Score=64.00  Aligned_cols=102  Identities=11%  Similarity=-0.008  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSI--------DSSH----------GLSQNNLAVLEAREGHIERASTYLQAAA  284 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al  284 (341)
                      ..++..-|+-++..|+|.+|...|+.|+..        .|..          ...+.|++.++...|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            344455555555666666666665555421        1222          2355666677777777777777777777


Q ss_pred             HhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        285 ASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       285 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      ...|.+..+++..|.+....=+.++|...|.++++++|.-
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            7777777777777777777777777777777777777654

>KOG1585|consensus

Probab=98.31  E-value=0.00027  Score=55.89  Aligned_cols=168  Identities=13%  Similarity=0.013  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAA  223 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~  223 (341)
                      ...+..-+.+|...+++++|..++.++.+-..++.      ..+...+.+......+.++..+|+++..+.-.+   ...
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            34466678888899999999999999986554432      345566777777889999999999998874332   114


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----C--CCch
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAAS----S--PYLY  291 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~--p~~~  291 (341)
                      ..-...+--....-+.++|+.+|++++.+-..+      .+.+...+.++.+..+|.+|-..+.+-...    .  ++-.
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~  190 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC  190 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence            444444445566789999999999998875333      356677889999999999998888775432    2  2223


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        292 ETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      ..+.....++....+|..|..+++...++
T Consensus       191 k~~va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  191 KAYVAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence            34555666677778999999999997766

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.26  E-value=1.1e-06  Score=47.44  Aligned_cols=32  Identities=25%  Similarity=0.181  Sum_probs=16.9

Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLAGDLQESY  311 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  311 (341)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555543

>KOG0545|consensus

Probab=98.25  E-value=3.5e-05  Score=60.68  Aligned_cols=106  Identities=12%  Similarity=0.025  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhh--------cccc--------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSL--------ALNE--------NAADVWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                      .++..-|+-++..|+|.+|...|+.++..        .|..        .....+.|+.+|+...|+|-++++...+.++
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            34667788888888888888888887654        2322        1145678999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16588        252 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  293 (341)
Q Consensus       252 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  293 (341)
                      ..|.+..+++..|.+....=+..+|...|.++++++|.-..+
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999999999999999999999999876553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.25  E-value=1.1e-06  Score=47.35  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16588        246 LHLALSIDSSHGLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       246 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56666666666666666666666666666664

>KOG2471|consensus

Probab=98.24  E-value=7.5e-06  Score=70.57  Aligned_cols=144  Identities=14%  Similarity=0.106  Sum_probs=116.4

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-HHcCCC--------cHHHHHHHHHHH
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL-LQMGLY--------NAELFNNLALCC  197 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~  197 (341)
                      ..+.+..+...+..-.+.++....+.+.++...+..++..|++.+|.+.+... +...|.        ....|+++|.++
T Consensus       214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh  293 (696)
T KOG2471|consen  214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH  293 (696)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence            45567777777877788888877888899999999999999999999887653 222232        233578999999


Q ss_pred             HHcCChhHHHHHHHHHHhh---------cccc-------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16588        198 FYSQQYDMVVTCFERALSL---------ALNE-------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQN  261 (341)
Q Consensus       198 ~~~~~~~~A~~~~~~al~~---------~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  261 (341)
                      +..|.|.-+..+|.++++.         .|..       ...++.++.|..|...|+.-.|.++|.++......++..|.
T Consensus       294 ~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWL  373 (696)
T KOG2471|consen  294 YQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWL  373 (696)
T ss_pred             eehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHH
Confidence            9999999999999999962         1111       23678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy16588        262 NLAVLEARE  270 (341)
Q Consensus       262 ~l~~~~~~~  270 (341)
                      .++.+++..
T Consensus       374 RlAEcCima  382 (696)
T KOG2471|consen  374 RLAECCIMA  382 (696)
T ss_pred             HHHHHHHHH
Confidence            999887543

>KOG1586|consensus

Probab=98.23  E-value=0.0014  Score=51.64  Aligned_cols=168  Identities=11%  Similarity=0.056  Sum_probs=114.4

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH------HHHH
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRD----A--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE------LFNN  192 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~  192 (341)
                      -+..|....++..|-..|.++-+..    .  +....+...+.+|. ..+.++|..++++++++.-+...      .+..
T Consensus        40 Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~  118 (288)
T KOG1586|consen   40 AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIE  118 (288)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhh
Confidence            3445555555555555555543321    1  12334445555554 45899999999999887655433      3457


Q ss_pred             HHHHHHHc-CChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------HH
Q psy16588        193 LALCCFYS-QQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL-------SQ  260 (341)
Q Consensus       193 la~~~~~~-~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~  260 (341)
                      +|.+|..- .++++|+.+|+++-+.....    ..-..+...+..-...++|.+|+..|++.....-++..       .+
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf  198 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF  198 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence            88888775 89999999999998875443    11234556666777889999999999998876655532       33


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16588        261 NNLAVLEAREGHIERASTYLQAAAASSPYLYET  293 (341)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  293 (341)
                      +.-|.++.-..+.-.+...+++..+++|...+.
T Consensus       199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            445667777788888889999999999987653

>KOG0530|consensus

Probab=98.21  E-value=0.00011  Score=58.56  Aligned_cols=173  Identities=10%  Similarity=0.024  Sum_probs=92.1

Q ss_pred             HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh-HH
Q psy16588        129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN-DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD-MV  206 (341)
Q Consensus       129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A  206 (341)
                      +.+......|+.+-..++..+|.+-.+|...-.++..+ .+..+-++++.+.++.+|.+..+|...-.+....|++. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            33444555566666666666666555555544444433 24555556666666666666666655555555555555 55


Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hC-----CHHHHHHHH
Q psy16588        207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR-EG-----HIERASTYL  280 (341)
Q Consensus       207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g-----~~~~A~~~~  280 (341)
                      ++..+.++..+.++  ..+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+.
T Consensus       133 Lef~~~~l~~DaKN--YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt  210 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKN--YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT  210 (318)
T ss_pred             HHHHHHHHhccccc--hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence            55566666555555  55565555555555556666666666665554444444432222211 11     122333444


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHH
Q psy16588        281 QAAAASSPYLYETHYNQAVISNL  303 (341)
Q Consensus       281 ~~al~~~p~~~~~~~~l~~~~~~  303 (341)
                      .+.+.+.|++..+|..|.-++..
T Consensus       211 ~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  211 KDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHHHHhCCCCccHHHHHHHHHHh
Confidence            55555556666666555555443

>KOG2471|consensus

Probab=98.21  E-value=1.4e-05  Score=68.91  Aligned_cols=147  Identities=8%  Similarity=-0.102  Sum_probs=116.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH-Hhhccc------cchHHHHHHHH
Q psy16588        158 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA-LSLALN------ENAADVWYNIS  230 (341)
Q Consensus       158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~~~------~~~~~~~~~la  230 (341)
                      .....|.+..+...+..-.+.+.....+.+......++.++..|++.+|.+.+... +...+.      -..-.+|+++|
T Consensus       211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG  290 (696)
T KOG2471|consen  211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG  290 (696)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence            44445566666777777777777777788889999999999999999999887654 222222      11234679999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh-c--------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        231 HVAIGISDTRLAIQCLHLALS-I--------DS---------SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       231 ~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      .+++..|.|.-+..+|.++++ .        .|         ...+++++.|..|...|+.-.|.++|.++......++.
T Consensus       291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr  370 (696)
T KOG2471|consen  291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR  370 (696)
T ss_pred             eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence            999999999999999999995 1        11         23568899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc
Q psy16588        293 THYNQAVISNLA  304 (341)
Q Consensus       293 ~~~~l~~~~~~~  304 (341)
                      .|..++.|+...
T Consensus       371 lWLRlAEcCima  382 (696)
T KOG2471|consen  371 LWLRLAECCIMA  382 (696)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.20  E-value=0.00043  Score=59.39  Aligned_cols=170  Identities=11%  Similarity=-0.006  Sum_probs=122.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHh----CCCCHHHHHHHHHHHHh---cCChHHHHHHHHH-HHHcCCCcHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKR----DATCMEAIACIGVNHFY---NDQPEVALLFYRR-LLQMGLYNAELFN  191 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~  191 (341)
                      ...+++-..|....+|+.-+.+.+..-..    -++...+.+.+|.++..   .|+.++|+..+.. .....+.+++.+.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            44556667888999999999999887665    45567778888888888   8999999999999 5556778899999


Q ss_pred             HHHHHHHH---------cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hc--
Q psy16588        192 NLALCCFY---------SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL--------SI--  252 (341)
Q Consensus       192 ~la~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~--  252 (341)
                      .+|.+|-.         ....++|+..|.++.+.+|+.   ..=.|++.++...|.-.+...-+++..        +.  
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            99988754         234789999999999999664   333455555555554332222222211        11  


Q ss_pred             --CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        253 --DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       253 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                        .-.+...+-.+..+..-.|++++|++.+++++.+.|....
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence              1223344456777888899999999999999998776543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=0.00059  Score=55.74  Aligned_cols=161  Identities=16%  Similarity=-0.030  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      .+.-+.-+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-...... ...........
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~l  212 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHH
Confidence            34455566667788999999999999999999999999999999999999999888877643322222 01111111122


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHcCCHHHH
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY--LYETHYNQAVISNLAGDLQES  310 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A  310 (341)
                      +.+.....+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-..+..+..  +..+...+..++...|..+.+
T Consensus       213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~  291 (304)
T COG3118         213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL  291 (304)
T ss_pred             HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence            2222222222 2345667779999999999999999999999999999888877643  344566666666665544444


Q ss_pred             HHHHH
Q psy16588        311 YNIVK  315 (341)
Q Consensus       311 ~~~~~  315 (341)
                      ...++
T Consensus       292 ~~~~R  296 (304)
T COG3118         292 VLAYR  296 (304)
T ss_pred             HHHHH
Confidence            33333

>KOG4507|consensus

Probab=98.19  E-value=1.8e-05  Score=69.83  Aligned_cols=101  Identities=19%  Similarity=0.160  Sum_probs=89.4

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16588        234 IGISDTRLAIQCLHLALSIDSSHG-LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN  312 (341)
Q Consensus       234 ~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  312 (341)
                      ...|+...|++++..++...|... ....+++.+....|-.-+|-..+.+++.+....+-.++.+|..+..+.+.+.|++
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            346899999999999999888654 3577899999999999999999999999997778899999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHH
Q psy16588        313 IVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       313 ~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      .|+++++++|+++....-+..+
T Consensus       698 ~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  698 AFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHHhcCCCChhhHHHHHHH
Confidence            9999999999998877665544

>KOG0376|consensus

Probab=98.19  E-value=2.8e-06  Score=73.22  Aligned_cols=107  Identities=11%  Similarity=0.115  Sum_probs=73.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC
Q psy16588        158 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS  237 (341)
Q Consensus       158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g  237 (341)
                      .-+...+.-++++.|+..|.++++++|+++..+-+.+..+...+++..|+.-+.++++.+|..  ..+|+..|.+.+..+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRRGTAVMALG   86 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeeccHHHHhHH
Confidence            344555566667777777777777777777777677777777777777777777777777766  677777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        238 DTRLAIQCLHLALSIDSSHGLSQNNLAVL  266 (341)
Q Consensus       238 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~  266 (341)
                      ++.+|...|+....+.|+++.+...+-.+
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            77777777777777777776665555444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.18  E-value=0.00053  Score=61.81  Aligned_cols=155  Identities=16%  Similarity=0.101  Sum_probs=115.1

Q ss_pred             hcCChHHHHHHHHHHHHcCCCc-HHH-----HHHHH-HHHH----HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHH
Q psy16588        165 YNDQPEVALLFYRRLLQMGLYN-AEL-----FNNLA-LCCF----YSQQYDMVVTCFERALSLALNENAADVWYNISHVA  233 (341)
Q Consensus       165 ~~~~~~~A~~~~~~al~~~p~~-~~~-----~~~la-~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~  233 (341)
                      -.||-+.++..+.++.+...-. +.+     .+... ..+.    .....+.|.+++.......|+.  .-..+..|.++
T Consensus       200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s--~lfl~~~gR~~  277 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS--ALFLFFEGRLE  277 (468)
T ss_pred             cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHH
Confidence            3589999999999987733211 111     11111 1111    2346778999999999999998  88899999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCCH-
Q psy16588        234 IGISDTRLAIQCLHLALSIDSS----HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-ETHYNQAVISNLAGDL-  307 (341)
Q Consensus       234 ~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~-  307 (341)
                      ...|+.++|++.|++++.....    ..-.++.++.++..+++|++|..+|.+..+.+.-+. ...+..|.|+...|+. 
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~  357 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE  357 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence            9999999999999998854322    234678899999999999999999999988654322 2445678888899988 


Q ss_pred             ------HHHHHHHHHHHhcC
Q psy16588        308 ------QESYNIVKKSLDLH  321 (341)
Q Consensus       308 ------~~A~~~~~~al~~~  321 (341)
                            ++|..+|.++-.+.
T Consensus       358 ~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  358 EAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             hhhhhHHHHHHHHHHHHHHH
Confidence                  88888888876553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2053|consensus

Probab=98.16  E-value=0.00011  Score=68.03  Aligned_cols=139  Identities=14%  Similarity=-0.060  Sum_probs=97.6

Q ss_pred             hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16588        165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ  244 (341)
Q Consensus       165 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  244 (341)
                      ..+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++  ...+..+-.+|..++++++|..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D--~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD--DLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc--hHHHHHHHHHHHHHhhhhHHHH
Confidence            45677888888888888888888877778888888888888887777666666666  6777777888888888888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHcCC
Q psy16588        245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE-THYNQAVISNLAGD  306 (341)
Q Consensus       245 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~  306 (341)
                      +|++++..+|. .+.+..+=.+|.+.+.|.+-.+.--+..+..|+++. .|.-+..++.....
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~  160 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS  160 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC
Confidence            88888888887 666666667777777776644444444445666554 33334444433333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.16  E-value=0.00022  Score=64.29  Aligned_cols=156  Identities=11%  Similarity=-0.037  Sum_probs=119.0

Q ss_pred             HcCCchHHHHHHHHHHHhCCCC-HHH-----HHHHHH-HHH----hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        131 GLNNMPMSVKYYKLILKRDATC-MEA-----IACIGV-NHF----YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       131 ~~g~~~~A~~~~~~~l~~~~~~-~~~-----~~~la~-~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      -.||-+.++..+.++.+...-. +-+     .+.... .+.    ...+.+.|.+.++...+..|+.....+..|.++..
T Consensus       200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~  279 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL  279 (468)
T ss_pred             cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3689999999999987732211 111     111111 111    24567889999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCH---
Q psy16588        200 SQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-GLSQNNLAVLEAREGHI---  273 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~---  273 (341)
                      .|+.++|++.|++++......  ...-.++.++.++..+++|++|..++.+..+.+.-. ....+..|.++...|+.   
T Consensus       280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~  359 (468)
T PF10300_consen  280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA  359 (468)
T ss_pred             hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence            999999999999988543222  234568899999999999999999999999876443 34456678888999999   


Q ss_pred             ----HHHHHHHHHHHHh
Q psy16588        274 ----ERASTYLQAAAAS  286 (341)
Q Consensus       274 ----~~A~~~~~~al~~  286 (341)
                          ++|.+.|.++-..
T Consensus       360 ~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  360 KEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence                8888888887543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2300|consensus

Probab=98.13  E-value=0.0011  Score=57.64  Aligned_cols=203  Identities=15%  Similarity=0.061  Sum_probs=143.8

Q ss_pred             HcCCchHHHHHHHHHHHhCCC------CHH--------HHHHHHHHHHhcCChHHHHHHHHHHHHc---CCC-------c
Q psy16588        131 GLNNMPMSVKYYKLILKRDAT------CME--------AIACIGVNHFYNDQPEVALLFYRRLLQM---GLY-------N  186 (341)
Q Consensus       131 ~~g~~~~A~~~~~~~l~~~~~------~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~  186 (341)
                      ..|-++++.++-++++.....      ...        .+-.+..+-.-.|++.+|++....+.+.   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            467778888888877754211      111        2335666777889999999988877664   333       3


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---------  256 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------  256 (341)
                      +.+++.+|......+.++.|...|..+.+..... .......++|.+|...|+-+.-.+.++.   +.|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence            4567888888888999999999999999875443 3355667899999998876554444443   34442         


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHH
Q psy16588        257 -GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYNIVKKSLDL---HPGHSY  326 (341)
Q Consensus       257 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~  326 (341)
                       ..+++..|...+.++++.+|...+.+.+++....      .-.+..|+.+..-.|+..++.+...-++++   -||.+.
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v  523 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV  523 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence             3567788888899999999999999999876211      114566888889999999998888777765   456555


Q ss_pred             HHHHHHHHHH
Q psy16588        327 SWDILRKLEQ  336 (341)
Q Consensus       327 ~~~~l~~~~~  336 (341)
                      -....+-+..
T Consensus       524 qLws~si~~~  533 (629)
T KOG2300|consen  524 QLWSSSILTD  533 (629)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>KOG0551|consensus

Probab=98.10  E-value=6.5e-05  Score=61.86  Aligned_cols=123  Identities=14%  Similarity=0.089  Sum_probs=99.6

Q ss_pred             CChHHHHHHHHHHHHc----CCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCH
Q psy16588        167 DQPEVALLFYRRLLQM----GLY-NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDT  239 (341)
Q Consensus       167 ~~~~~A~~~~~~al~~----~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~  239 (341)
                      |+...-...++.....    .|+ .+.-+..-|+-|+..++|..|+..|.+.|+..-.+  .....|.+.+.+....|+|
T Consensus        56 gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny  135 (390)
T KOG0551|consen   56 GDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY  135 (390)
T ss_pred             CCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH
Confidence            6655555555544332    121 34557778999999999999999999999886554  4567889999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       240 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                      ..|+.-+.+++.++|.+..+++.-+.++..+.++.+|..+++..+.++..
T Consensus       136 Rs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  136 RSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            99999999999999999999999999999999999999999998876544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.10  E-value=9.3e-06  Score=43.94  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      +|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.09  E-value=9.9e-06  Score=43.85  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=8.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        297 QAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       297 l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      +|.++..+|++++|+.+|++++++
T Consensus         7 ~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    7 LGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHH
Confidence            333333333333333333333333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.09  E-value=7.1e-06  Score=44.44  Aligned_cols=34  Identities=26%  Similarity=0.160  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      +.+|+++|.++..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.08  E-value=0.00027  Score=53.08  Aligned_cols=113  Identities=19%  Similarity=0.037  Sum_probs=71.7

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI  273 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  273 (341)
                      |......++...++..+++++.+...+.....-.        ..-.......+++..      ..+...++..+...|++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~   78 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY------LDALERLAEALLEAGDY   78 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCH
Confidence            4444556677777777777777654430000000        011111222222221      34566778888899999


Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      ++|+..+++++..+|.+..++..+..+|...|+..+|+..|++....
T Consensus        79 ~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   79 EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0551|consensus

Probab=98.07  E-value=0.00016  Score=59.57  Aligned_cols=99  Identities=19%  Similarity=0.169  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN  228 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  228 (341)
                      +..+-.-|+-|++.++|..|+..|.+.++..-.+    +..|.+.+-+.+..|+|..|+.-+.+++.++|.+  ..+++.
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R  158 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIR  158 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhh
Confidence            4556678999999999999999999999875443    4568899999999999999999999999999999  999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16588        229 ISHVAIGISDTRLAIQCLHLALSID  253 (341)
Q Consensus       229 la~~~~~~g~~~~A~~~~~~al~~~  253 (341)
                      =+.|++.+.++++|..++++.+.++
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999999999986554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.00041  Score=56.59  Aligned_cols=152  Identities=14%  Similarity=0.027  Sum_probs=107.2

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHc
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF-NNLALCCFYS  200 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~  200 (341)
                      .+.-+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-.........- ...-..+.+.
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa  216 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA  216 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            334456778899999999999999999999999999999999999999999888776433222221111 1111233333


Q ss_pred             CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCHHHH
Q psy16588        201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS--SHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      ....+. ..+++.+..+|++  ..+.+.++..+...|+.++|.+.+-..++.+.  .+..+...+-.++...|.-+.+
T Consensus       217 a~~~~~-~~l~~~~aadPdd--~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~  291 (304)
T COG3118         217 AATPEI-QDLQRRLAADPDD--VEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL  291 (304)
T ss_pred             hcCCCH-HHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence            333332 2355566779999  99999999999999999999999999888763  3344555555555555533333

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=98.06  E-value=0.0055  Score=51.93  Aligned_cols=187  Identities=18%  Similarity=0.133  Sum_probs=139.0

Q ss_pred             HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----c
Q psy16588        129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN----DQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----S  200 (341)
Q Consensus       129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~  200 (341)
                      ....+++..+...+..+-..  .+......++.+|...    .+..+|..+|+.+.  ....+...+.||.+|..    .
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc
Confidence            34567788888888887652  2346777888888753    46788999999544  45567788889999887    4


Q ss_pred             CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q psy16588        201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-------DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----  269 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----  269 (341)
                      .++.+|..+|+++....-... ....+.++.+|..-.       +...|+..|.++-...  +..+.+.+|.+|..    
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv  203 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV  203 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence            589999999999988743320 133777777776541       2347888888887765  67888889988855    


Q ss_pred             hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCCCH
Q psy16588        270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG---------------DLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~al~~~p~~~  325 (341)
                      ..++++|..+|.++.+...  ...++.++ ++...|               +...|..++.++....+...
T Consensus       204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence            3488999999999998766  77888888 777666               88888999998887766543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.04  E-value=1.7e-05  Score=42.90  Aligned_cols=31  Identities=23%  Similarity=0.214  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                      +++.+|.++...|++++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.99  E-value=0.00094  Score=57.89  Aligned_cols=171  Identities=11%  Similarity=-0.043  Sum_probs=107.2

Q ss_pred             HHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHH
Q psy16588        146 LKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAAD  224 (341)
Q Consensus       146 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~  224 (341)
                      +..+|-+.+.+..++.++..+|+.+.|.++.++++-.........+..-..-...|.-   .--|     ..+.+ ....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---rL~~-----~~~eNR~ffl  104 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---RLDY-----RRPENRQFFL  104 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---ccCC-----ccccchHHHH
Confidence            4567777777778888888888888887777777632111100000000000000000   0000     01222 2245


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCC-----CchhHHHHH
Q psy16588        225 VWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLE-AREGHIERASTYLQAAAASSP-----YLYETHYNQ  297 (341)
Q Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l  297 (341)
                      +.+.....+.+.|-+.-|.++.+-.+.++|. |+.........| .+.++|+--+..++.......     .-+...+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            6677778888999999999999999999998 766554444444 677888877777777655211     123466778


Q ss_pred             HHHHHHcCCH---------------HHHHHHHHHHHhcCCCC
Q psy16588        298 AVISNLAGDL---------------QESYNIVKKSLDLHPGH  324 (341)
Q Consensus       298 ~~~~~~~g~~---------------~~A~~~~~~al~~~p~~  324 (341)
                      +.++...++.               ++|...+.+|+...|.-
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            8888888888               89999999999888853

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0530|consensus

Probab=97.97  E-value=0.0019  Score=51.77  Aligned_cols=218  Identities=10%  Similarity=0.064  Sum_probs=149.9

Q ss_pred             chHhhhcccccccccCCccchhHhhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHH
Q psy16588         77 TLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAI  156 (341)
Q Consensus        77 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  156 (341)
                      ++.+...-+|........+   .|.+++-..++.-+|.+-.+..-+..  .+-....+..+-++++.++++.+|.+-.+|
T Consensus        41 ~fr~~m~YfRAI~~~~E~S---~RAl~LT~d~i~lNpAnYTVW~yRr~--iL~~l~~dL~~El~~l~eI~e~npKNYQvW  115 (318)
T KOG0530|consen   41 DFRDVMDYFRAIIAKNEKS---PRALQLTEDAIRLNPANYTVWQYRRV--ILRHLMSDLNKELEYLDEIIEDNPKNYQVW  115 (318)
T ss_pred             hHHHHHHHHHHHHhccccC---HHHHHHHHHHHHhCcccchHHHHHHH--HHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence            4566666677744444433   37788877888888888755433333  233334567788888999999999999999


Q ss_pred             HHHHHHHHhcCChH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16588        157 ACIGVNHFYNDQPE-VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG  235 (341)
Q Consensus       157 ~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~  235 (341)
                      ...-.+....|++. .-+++.+.++..+..+..+|...-.+....+.|+.-+.+..+.++.+-.+  -.+|+..-.+...
T Consensus       116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N--NSAWN~Ryfvi~~  193 (318)
T KOG0530|consen  116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN--NSAWNQRYFVITN  193 (318)
T ss_pred             HHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc--cchhheeeEEEEe
Confidence            88888888888877 77888888998888888888888888888888999999999988887766  5666554333322


Q ss_pred             -cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hC--CHHHHHHHHHHHH-HhCCCchhHHHHHHHHH
Q psy16588        236 -IS-----DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR-EG--HIERASTYLQAAA-ASSPYLYETHYNQAVIS  301 (341)
Q Consensus       236 -~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~  301 (341)
                       .|     ..+.-+.+..+.+.+.|++..+|..|..++.. .|  .+.+........+ .....++..+..+...|
T Consensus       194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~  269 (318)
T KOG0530|consen  194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY  269 (318)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence             22     23344567778888889999999888887765 33  2334444444433 22333444555555555

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.95  E-value=0.0014  Score=50.19  Aligned_cols=97  Identities=18%  Similarity=0.108  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        226 WYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      -..++..+...|++++|+..++.++....+.   ..+-.+++.+...+|++++|+..+.....-+= ....-...|.++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHH
Confidence            3455556666666666666666655433222   23345566666666666666666554322100 0112334566666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC
Q psy16588        303 LAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       303 ~~g~~~~A~~~~~~al~~~p~  323 (341)
                      ..|+.++|+..|+++++..++
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         171 AKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HcCchHHHHHHHHHHHHccCC
Confidence            666666666666666666533

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.94  E-value=0.00042  Score=52.02  Aligned_cols=114  Identities=13%  Similarity=0.026  Sum_probs=77.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH-HHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16588        157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV-TCFERALSLALNENAADVWYNISHVAIG  235 (341)
Q Consensus       157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~~la~~~~~  235 (341)
                      ...|......++.+.++..+++++.+.......-..       ...|-... ..++..      .  ..+...++..+..
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~--~~~~~~l~~~~~~   74 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------Y--LDALERLAEALLE   74 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------H--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------H--HHHHHHHHHHHHh
Confidence            334556667789999999999999875432110000       01222111 122221      2  5677788888899


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       236 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      .|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|++...
T Consensus        75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2300|consensus

Probab=97.93  E-value=0.0028  Score=55.19  Aligned_cols=188  Identities=11%  Similarity=-0.009  Sum_probs=135.4

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-c--HHHHH
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKR---DAT-------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-N--AELFN  191 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~  191 (341)
                      ...+-.-.|++.+|++-...+.+.   .|.       .+..++.+|......+.++.|...|..+.+.-.. +  ..+..
T Consensus       329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl  408 (629)
T KOG2300|consen  329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL  408 (629)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            345556789999999888777654   343       3566788898888999999999999999886543 2  34567


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhcccc--------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CH
Q psy16588        192 NLALCCFYSQQYDMVVTCFERALSLALNE--------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------HG  257 (341)
Q Consensus       192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~  257 (341)
                      ++|..|...++-+.-.+.++..   .|.+        ....+++..|...+.++++.+|...+.+.++....      .+
T Consensus       409 nlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a  485 (629)
T KOG2300|consen  409 NLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA  485 (629)
T ss_pred             hHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence            8899999988766555555443   4432        33567788888899999999999999999987621      13


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---Cchh---HHHHHHHHHHHcCC--HHHHHHHHH
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASSP---YLYE---THYNQAVISNLAGD--LQESYNIVK  315 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~---~~~~l~~~~~~~g~--~~~A~~~~~  315 (341)
                      ..+..++.+....|+..++.....-++.+..   +.+.   ...-+-.++...|+  .+...+.|.
T Consensus       486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~  551 (629)
T KOG2300|consen  486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR  551 (629)
T ss_pred             HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence            3556788889999999999999988887654   3333   22345566777777  444444443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.91  E-value=0.0021  Score=55.09  Aligned_cols=146  Identities=13%  Similarity=-0.030  Sum_probs=104.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16588        140 KYYKLILKRDATCMEAIACIGVNHFYNDQ------------PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV  207 (341)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  207 (341)
                      .-|++.++.+|.+.+.|..+....-..-.            .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45677788888888888877765544322            356677888888888888888888777777888888888


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCC------------------CHHHHHHHHHH
Q psy16588        208 TCFERALSLALNENAADVWYNISHVAIG---ISDTRLAIQCLHLALSIDSS------------------HGLSQNNLAVL  266 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~------------------~~~~~~~l~~~  266 (341)
                      +-+++++..+|.+  ..+|..+-.....   .-.++.....|.+++..-..                  ...+...+...
T Consensus        86 ~~we~~l~~~~~~--~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f  163 (321)
T PF08424_consen   86 KKWEELLFKNPGS--PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF  163 (321)
T ss_pred             HHHHHHHHHCCCC--hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence            8888888888888  7777665544433   34567777777777653110                  12345566677


Q ss_pred             HHHhCCHHHHHHHHHHHHHhC
Q psy16588        267 EAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       267 ~~~~g~~~~A~~~~~~al~~~  287 (341)
                      ..+.|..+.|+..++..++++
T Consensus       164 l~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  164 LRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHCCchHHHHHHHHHHHHHH
Confidence            778888888888888888865

>KOG1258|consensus

Probab=97.86  E-value=0.019  Score=51.57  Aligned_cols=217  Identities=14%  Similarity=0.051  Sum_probs=137.9

Q ss_pred             CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCc---HHH
Q psy16588        114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV-NHFYNDQPEVALLFYRRLLQMGLYN---AEL  189 (341)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~~---~~~  189 (341)
                      .-|....-|...+..-.+.|..+.+++.|++++..-|...+.|..+-. +-...|+.+.-...|++|......+   ...
T Consensus        74 kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~l  153 (577)
T KOG1258|consen   74 KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPL  153 (577)
T ss_pred             hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHH
Confidence            345555778888889999999999999999999998887777765433 3335566666667777776653222   112


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhh-----------------------------------------------------
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSL-----------------------------------------------------  216 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~-----------------------------------------------------  216 (341)
                      |-.+-..-..++++..-..+|++.++.                                                     
T Consensus       154 Wdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~  233 (577)
T KOG1258|consen  154 WDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEEL  233 (577)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHH
Confidence            222222222233333333333333322                                                     


Q ss_pred             --------------------------------------------------------cccc-chHHHHHHHHHHHHhcCCH
Q psy16588        217 --------------------------------------------------------ALNE-NAADVWYNISHVAIGISDT  239 (341)
Q Consensus       217 --------------------------------------------------------~~~~-~~~~~~~~la~~~~~~g~~  239 (341)
                                                                              .|.. .....|..........|++
T Consensus       234 ~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~  313 (577)
T KOG1258|consen  234 EIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF  313 (577)
T ss_pred             HHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence                                                                    1111 1133444455555566777


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS-PYLYETHYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       240 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                      +...-.|++++--.......|...+......|+.+-|...+..+.++. ++.+.++..-+.+....|++..|...+++..
T Consensus       314 ~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~  393 (577)
T KOG1258|consen  314 SRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE  393 (577)
T ss_pred             HHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            777777777776666667777777777777788877777777777764 5555667777777777888888888888888


Q ss_pred             hcCCCCHHHHHH
Q psy16588        319 DLHPGHSYSWDI  330 (341)
Q Consensus       319 ~~~p~~~~~~~~  330 (341)
                      +-.|+...+-..
T Consensus       394 ~e~pg~v~~~l~  405 (577)
T KOG1258|consen  394 SEYPGLVEVVLR  405 (577)
T ss_pred             hhCCchhhhHHH
Confidence            777777554433

>KOG1550|consensus

Probab=97.81  E-value=0.0052  Score=56.82  Aligned_cols=174  Identities=19%  Similarity=0.207  Sum_probs=128.6

Q ss_pred             CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHcC
Q psy16588        134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN-----DQPEVALLFYRRLLQ-------MGLYNAELFNNLALCCFYSQ  201 (341)
Q Consensus       134 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~~  201 (341)
                      +...+..+++.+.+..  +..+.+.+|.+|..-     .+.+.|+.+|+.+..       ..  .+.+.+.+|.+|....
T Consensus       227 ~~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~  302 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGL  302 (552)
T ss_pred             hhhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCC
Confidence            3567888888876654  678888888888754     689999999999977       33  4557788999998843


Q ss_pred             -----ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q psy16588        202 -----QYDMVVTCFERALSLALNENAADVWYNISHVAIGIS---DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----  269 (341)
Q Consensus       202 -----~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----  269 (341)
                           ++..|..+|.++-...  +  +.+.+.+|.++..-.   ++..|.++|..|...  .+..+.+.++.+|..    
T Consensus       303 ~~~~~d~~~A~~~~~~aA~~g--~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv  376 (552)
T KOG1550|consen  303 GVEKIDYEKALKLYTKAAELG--N--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGV  376 (552)
T ss_pred             CCccccHHHHHHHHHHHHhcC--C--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCc
Confidence                 6788999999998774  4  678899999987655   678999999999765  456788888888754    


Q ss_pred             hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q psy16588        270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLA-GDLQESYNIVKKSLD  319 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~  319 (341)
                      .-+...|..+++++.+..  ++.+.+.++.++..- +.++.+...+....+
T Consensus       377 ~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  377 ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE  425 (552)
T ss_pred             CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence            357899999999999887  344455555554332 666655555444433

>KOG1914|consensus

Probab=97.79  E-value=0.0085  Score=53.07  Aligned_cols=179  Identities=12%  Similarity=-0.037  Sum_probs=77.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcC---C
Q psy16588        141 YYKLILKRDATCMEAIACIGVNHFYNDQ--------------PEVALLFYRRLLQMGL-YNAELFNNLALCCFYSQ---Q  202 (341)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~---~  202 (341)
                      .+++++..-+-++++|+..+..+...++              -+++..+|++++...- .+...++.++..-...-   +
T Consensus       267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~  346 (656)
T KOG1914|consen  267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK  346 (656)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence            3455555555555665554444444333              4555555555554321 12222222222211111   2


Q ss_pred             hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCHHHHHHHHH
Q psy16588        203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHIERASTYLQ  281 (341)
Q Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~  281 (341)
                      ++....++++++.+...+ ..-+|..+-+.-.+..-...|...|.++-+.......++..-|.+ |.-.++.+-|...|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence            444444555554442222 012333333333333444455555555544332222222222222 233445555555555


Q ss_pred             HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        282 AAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       282 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      -.+...++.+..-......+...++-..+..+|++++..
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            555555555554444555555555555555555555543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.79  E-value=0.013  Score=51.13  Aligned_cols=115  Identities=16%  Similarity=0.147  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCC--------
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDS----SHGLSQNNLAVLEAREGHIERASTYLQAAAAS-SPY--------  289 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------  289 (341)
                      ...|...+.+..+.|+++.|...+.++...++    ..+.+.+..+..+...|+..+|+..++..+.. ...        
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~  225 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA  225 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence            66777788888888888888888877776542    14566667777778888888888877777661 100        


Q ss_pred             -------------------------chhHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        290 -------------------------LYETHYNQAVISNLA------GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       290 -------------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                                               ...++..+|......      +..+++...|+++.++.|+...+|+.++.....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK  304 (352)
T ss_pred             HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence                                     012455566666666      777888888888888888888888777666543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1308|consensus

Probab=97.78  E-value=2.7e-05  Score=64.38  Aligned_cols=92  Identities=12%  Similarity=0.093  Sum_probs=67.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCH
Q psy16588        160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDT  239 (341)
Q Consensus       160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~  239 (341)
                      +.-....|.++.|++.|..++.++|.....+...+.++..+++...|+.-|..++.++|+.  ..-+-..+.....+|+|
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds--a~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS--AKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc--ccccchhhHHHHHhhch
Confidence            3344456777777777777777777777777777777777777777777777777777777  66666677777777777


Q ss_pred             HHHHHHHHHHHhcC
Q psy16588        240 RLAIQCLHLALSID  253 (341)
Q Consensus       240 ~~A~~~~~~al~~~  253 (341)
                      .+|...+..+.+++
T Consensus       199 e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  199 EEAAHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHHHHhcc
Confidence            77777777777665

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.76  E-value=0.01  Score=45.59  Aligned_cols=100  Identities=14%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA  268 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  268 (341)
                      ...++..+...+++++|+..++.++....+. ....+-..++.+...+|.+++|+..+...-... -.+..-...|.++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence            4567888999999999999999999775554 456677899999999999999999887653321 12334566899999


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCc
Q psy16588        269 REGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       269 ~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      ..|+-++|+..|+++++..++.
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         171 AKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HcCchHHHHHHHHHHHHccCCh
Confidence            9999999999999999987543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.75  E-value=0.0052  Score=52.67  Aligned_cols=146  Identities=8%  Similarity=-0.030  Sum_probs=116.0

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHH
Q psy16588        174 LFYRRLLQMGLYNAELFNNLALCCFYSQQ------------YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL  241 (341)
Q Consensus       174 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~  241 (341)
                      .-|.+.++.+|.+...|..+....-..-.            .+.-+.+|++|++.+|++  ..++..+-.+..+..+.++
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~   83 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEK   83 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHH
Confidence            45778889999999999988866544322            456688999999999999  8888888888888889999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCC----C--------------chhHHHHHHHH
Q psy16588        242 AIQCLHLALSIDSSHGLSQNNLAVLEAR---EGHIERASTYLQAAAASSP----Y--------------LYETHYNQAVI  300 (341)
Q Consensus       242 A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p----~--------------~~~~~~~l~~~  300 (341)
                      ..+.+++++..+|++...|..+-.....   .-.+.+....|.+++..-.    .              ...+...+...
T Consensus        84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f  163 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF  163 (321)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence            9999999999999999988776555433   3357788888888876311    0              11256678888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC
Q psy16588        301 SNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       301 ~~~~g~~~~A~~~~~~al~~~  321 (341)
                      +.+.|..+.|+..++-.++++
T Consensus       164 l~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  164 LRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHCCchHHHHHHHHHHHHHH
Confidence            999999999999999999885

>KOG1258|consensus

Probab=97.71  E-value=0.022  Score=51.28  Aligned_cols=204  Identities=12%  Similarity=-0.019  Sum_probs=148.9

Q ss_pred             HcCCchHHHHHHHHHHHh-----CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16588        131 GLNNMPMSVKYYKLILKR-----DA---TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ  202 (341)
Q Consensus       131 ~~g~~~~A~~~~~~~l~~-----~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  202 (341)
                      ......+.+-.++..++.     .|   .+...|..........|+++.....|++++--.....+.|...+......|+
T Consensus       267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~  346 (577)
T KOG1258|consen  267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD  346 (577)
T ss_pred             hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence            334444455555555543     12   2345566777777788999999999999998888888999999999999999


Q ss_pred             hhHHHHHHHHHHhhc-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH---
Q psy16588        203 YDMVVTCFERALSLA-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST---  278 (341)
Q Consensus       203 ~~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~---  278 (341)
                      .+-|...+.++.+.. +..  +.+...-+......|++..|...++......|....+-........+.|+.+.+..   
T Consensus       347 ~~~~~~~~~~~~~i~~k~~--~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~  424 (577)
T KOG1258|consen  347 VSLANNVLARACKIHVKKT--PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNE  424 (577)
T ss_pred             hhHHHHHHHhhhhhcCCCC--cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence            999998888888775 444  66777777788888999999999999998888888887778888888999988884   


Q ss_pred             HHHHHHHhCCCc---hhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        279 YLQAAAASSPYL---YETHYNQAVI-SNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       279 ~~~~al~~~p~~---~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      .+.....-..+.   ...+...+.. +.-.++.+.|...+.++++..|++...+..+..+..
T Consensus       425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~  486 (577)
T KOG1258|consen  425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL  486 (577)
T ss_pred             HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence            332222211111   1233344443 444678899999999999999999877766665543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.69  E-value=0.023  Score=48.11  Aligned_cols=161  Identities=17%  Similarity=0.168  Sum_probs=119.6

Q ss_pred             HhhhcHHHHHHH----cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCc-HHHH
Q psy16588        120 VSRLNLAKIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYN-AELF  190 (341)
Q Consensus       120 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~  190 (341)
                      .....++..|..    ..+..+|..+|..+.  ...++.+.+.+|.+|..    ..+..+|..+|+++....... ....
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~  151 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM  151 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence            345555555543    345778999999554  34578899999999987    458999999999999986555 4557


Q ss_pred             HHHHHHHHHcC-------ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHH
Q psy16588        191 NNLALCCFYSQ-------QYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLS  259 (341)
Q Consensus       191 ~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~  259 (341)
                      +.++.+|..-.       +...|...|.++-...  +  ..+.+.+|.+|..    ..++.+|..+|.++-+...  ...
T Consensus       152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~--~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a  225 (292)
T COG0790         152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N--PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAA  225 (292)
T ss_pred             HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C--HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHH
Confidence            88888887642       2337888898887775  4  7889999988855    3589999999999998876  788


Q ss_pred             HHHHHHHHHHhC---------------CHHHHHHHHHHHHHhCCC
Q psy16588        260 QNNLAVLEAREG---------------HIERASTYLQAAAASSPY  289 (341)
Q Consensus       260 ~~~l~~~~~~~g---------------~~~~A~~~~~~al~~~p~  289 (341)
                      .+.++ ++...|               +...|...+..+....+.
T Consensus       226 ~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         226 CYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             HHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            88888 666666               666667777666655443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.69  E-value=8.4e-05  Score=40.09  Aligned_cols=30  Identities=33%  Similarity=0.561  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      +|+.+|.+|..+|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            445555555555555555555555555555

...

>KOG1308|consensus

Probab=97.67  E-value=5e-05  Score=62.81  Aligned_cols=95  Identities=8%  Similarity=0.004  Sum_probs=88.6

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhH
Q psy16588        126 AKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM  205 (341)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  205 (341)
                      +.-.+..|.+++|++.|..++.++|.....+...+.++..+++...|+.-+..++.++|+...-|-..+.....+|+|.+
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            35566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccc
Q psy16588        206 VVTCFERALSLALNE  220 (341)
Q Consensus       206 A~~~~~~al~~~~~~  220 (341)
                      |...+..+.+++-+.
T Consensus       201 aa~dl~~a~kld~dE  215 (377)
T KOG1308|consen  201 AAHDLALACKLDYDE  215 (377)
T ss_pred             HHHHHHHHHhccccH
Confidence            999999999987553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.66  E-value=0.009  Score=52.06  Aligned_cols=141  Identities=16%  Similarity=0.098  Sum_probs=110.1

Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC-C---
Q psy16588        183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSI-DS-S---  255 (341)
Q Consensus       183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p-~---  255 (341)
                      .......|...+.+....|+++.|...+.++....+..  ..+.+.+..+.++...|+..+|+..++..++. .. .   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            44556778889999999999999999999988765332  13678888899999999999999988888771 10 0   


Q ss_pred             -----------------------------CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        256 -----------------------------HGLSQNNLAVLEARE------GHIERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       256 -----------------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                                                   .+.++..+|......      +..++++..|+++++.+|....+|+.+|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                         134566677777777      889999999999999999999999999888


Q ss_pred             HHHcCC-----------------HHHHHHHHHHHHhcCCC
Q psy16588        301 SNLAGD-----------------LQESYNIVKKSLDLHPG  323 (341)
Q Consensus       301 ~~~~g~-----------------~~~A~~~~~~al~~~p~  323 (341)
                      +...-+                 ...|+..|-+++...+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            765421                 13488889999998887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.65  E-value=0.023  Score=53.43  Aligned_cols=200  Identities=13%  Similarity=-0.014  Sum_probs=135.3

Q ss_pred             hcHHHHHHHcCCchHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-----HH
Q psy16588        123 LNLAKIFEGLNNMPMSVKYYKLILKRDAT---------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-----AE  188 (341)
Q Consensus       123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~  188 (341)
                      +..+.......++.+|..++.++...-+.         ..+..-..|.+....|++++|+++.+.++..-|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            33456777889999999999888765443         12334467788889999999999999999887764     34


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCH--HHHHHHHHHHHh----cCCCCHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDT--RLAIQCLHLALS----IDSSHGL  258 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~----~~p~~~~  258 (341)
                      ++..+|.+..-.|++++|..+.+++.+.....    ....+....+.++..+|+.  .+....|...-.    ..|.+.-
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f  578 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF  578 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            67788999999999999999999998874333    1233445567888888933  333333333222    2344333


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASS----PYLYE---THYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      .....+.++...-+++.+.......++..    |....   +...|+.++...|+.++|...+.....+.-
T Consensus       579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~  649 (894)
T COG2909         579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL  649 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            34444444444444666666666655542    22222   335799999999999999999998886643

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.63  E-value=0.00047  Score=41.14  Aligned_cols=47  Identities=13%  Similarity=0.224  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      +.++.++..+.+.|+|++|..+.+.+++..|+|..+......+....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            35677888888888888888888888888888888887777776554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.61  E-value=0.00015  Score=39.11  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSP  288 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  288 (341)
                      +|+.+|.+|..+|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            444555555555555555555555555544

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.56  E-value=0.012  Score=51.15  Aligned_cols=177  Identities=11%  Similarity=-0.052  Sum_probs=94.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh----
Q psy16588        141 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL----  216 (341)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----  216 (341)
                      .+++++...+-.+++|+.........++-++|+...++++...|.   ..+.++.+|...++-+....+|+++.+-    
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~  366 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK  366 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence            455666666666777777777777777777777777776666554   4555666666555555555555544332    


Q ss_pred             --------------cccc----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhC
Q psy16588        217 --------------ALNE----------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREG  271 (341)
Q Consensus       217 --------------~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g  271 (341)
                                    ++..          ....+|..+-..-.+..-.+.|...|-++-+..-...+++..-|.+ +...|
T Consensus       367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~  446 (660)
T COG5107         367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG  446 (660)
T ss_pred             HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC
Confidence                          1100          0011122222222333345555566666554432222333222222 34456


Q ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      ++.-|...|+-.+...|+++......-..+...++-..|..+|++++..
T Consensus       447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r  495 (660)
T COG5107         447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER  495 (660)
T ss_pred             CcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence            6666666666666666666555555555556666666666666655543

>KOG4507|consensus

Probab=97.54  E-value=0.00037  Score=61.87  Aligned_cols=93  Identities=23%  Similarity=0.151  Sum_probs=43.3

Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|+...|+.++..++...|.. ......++++++...|-...|-.++.+++.+....+..++.+|.++..+.+.+.|++.
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~-~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQ-QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhh-hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            444444555544444444433 0122344444444444444444444444444444444444444444444455555555


Q ss_pred             HHHHHHhCCCchhH
Q psy16588        280 LQAAAASSPYLYET  293 (341)
Q Consensus       280 ~~~al~~~p~~~~~  293 (341)
                      |+++++..|+++..
T Consensus       699 ~~~a~~~~~~~~~~  712 (886)
T KOG4507|consen  699 FRQALKLTTKCPEC  712 (886)
T ss_pred             HHHHHhcCCCChhh
Confidence            55555444444443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.53  E-value=0.011  Score=51.44  Aligned_cols=36  Identities=11%  Similarity=0.142  Sum_probs=30.3

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHH
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILK  147 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  147 (341)
                      +...|.+.   .+.+.++.++..+|++..|.+++++++-
T Consensus        33 l~~~PyHi---dtLlqls~v~~~~gd~~~A~~lleRALf   68 (360)
T PF04910_consen   33 LQKNPYHI---DTLLQLSEVYRQQGDHAQANDLLERALF   68 (360)
T ss_pred             HHHCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455555   8899999999999999999999999964

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1914|consensus

Probab=97.51  E-value=0.046  Score=48.70  Aligned_cols=186  Identities=11%  Similarity=0.025  Sum_probs=136.1

Q ss_pred             chHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCChhHHHHH
Q psy16588        135 MPMSVKYYKLILKRDA-TCMEAIACIGVNHFYND---QPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQYDMVVTC  209 (341)
Q Consensus       135 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~  209 (341)
                      .+++..+|++++...- .+...++.++..-...-   +++..-..+++++.....+ ..+|..+-+...+..-...|..+
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            5567777777766432 23334444444333322   3677778888888764443 34566666677777778889999


Q ss_pred             HHHHHhhccccchHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Q psy16588        210 FERALSLALNENAADVWYNISH-VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS--  286 (341)
Q Consensus       210 ~~~al~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  286 (341)
                      |.++-+..-..  ..++..-|. -|...++..-|...|+-.++..++.+..-......+...++-..+...|++++..  
T Consensus       389 F~kaR~~~r~~--hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l  466 (656)
T KOG1914|consen  389 FKKAREDKRTR--HHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL  466 (656)
T ss_pred             HHHHhhccCCc--chhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence            99987765443  344444333 3456899999999999999999999999999999999999999999999999987  


Q ss_pred             CCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        287 SPY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       287 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      .++ ...+|..+...-..-|+....++.-++-....|
T Consensus       467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            332 346898898889999999998888877776666

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.48  E-value=0.02  Score=42.79  Aligned_cols=83  Identities=16%  Similarity=0.025  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16588        225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA  304 (341)
Q Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  304 (341)
                      .+..+..+-...++.+++...+....-+.|..+..-..-|.++...|++.+|+..|+.+.+..|..+.+.-.++.|+..+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            34444444445555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCH
Q psy16588        305 GDL  307 (341)
Q Consensus       305 g~~  307 (341)
                      |+.
T Consensus        92 ~D~   94 (160)
T PF09613_consen   92 GDP   94 (160)
T ss_pred             CCh
Confidence            554

>KOG1550|consensus

Probab=97.46  E-value=0.019  Score=53.13  Aligned_cols=157  Identities=18%  Similarity=0.200  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-----CChhHHHHHHHHHHhh-----ccccchHHHHHHHHHHHHhcC-
Q psy16588        169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYS-----QQYDMVVTCFERALSL-----ALNENAADVWYNISHVAIGIS-  237 (341)
Q Consensus       169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~-----~~~~~~~~~~~~la~~~~~~g-  237 (341)
                      ...|..+++.+....  +......+|.+|..-     .+.+.|+.+|+.+...     ....  +.+.+.+|.+|.... 
T Consensus       228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~--~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL--PPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC--CccccHHHHHHhcCCC
Confidence            567888888887654  566777888888764     6899999999999771     1113  567889999998743 


Q ss_pred             ----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc----CC
Q psy16588        238 ----DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---HIERASTYLQAAAASSPYLYETHYNQAVISNLA----GD  306 (341)
Q Consensus       238 ----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~  306 (341)
                          ++..|+.+|.++-...  ++.+.+.+|.++..-.   ++..|.++|..+...  .+..+.++++.+|..-    -+
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence                7788999999998765  4667788888886655   678999999999765  4677889999988753    47


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        307 LQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       307 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      ...|..+++++-+..  ++.+...+..+.
T Consensus       380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~  406 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG--NPSAAYLLGAFY  406 (552)
T ss_pred             HHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence            899999999999988  444455554443

>PRK10941 hypothetical protein; Provisional

Probab=97.46  E-value=0.0024  Score=52.70  Aligned_cols=80  Identities=13%  Similarity=-0.029  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      ..+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|..-++..++..|+++.+.....++...
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l  261 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI  261 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            34567777888888888888888888888888888888888888888888888888888888888888777666655543

>KOG0985|consensus

Probab=97.46  E-value=0.014  Score=55.55  Aligned_cols=56  Identities=9%  Similarity=-0.180  Sum_probs=30.4

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL  180 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  180 (341)
                      ..|..+|....+.|...+|++.|-++     +++..+.....+..+.|.|++-++++.-+-
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            44555555555666666665555443     244445555555555555555555555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.44  E-value=0.0003  Score=37.49  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      +++.+|.++.+.|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666665554

>KOG2396|consensus

Probab=97.42  E-value=0.0041  Score=54.48  Aligned_cols=90  Identities=12%  Similarity=0.011  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Q psy16588        205 MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH-IERASTYLQAA  283 (341)
Q Consensus       205 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a  283 (341)
                      .-...|+.++...+.+  ...|........+.+.+.+--..|.+++..+|++++.|..-+.-.+..+. .+.|...|.++
T Consensus        89 rIv~lyr~at~rf~~D--~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGD--VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            4455677777776666  77777776666666667777777777777777777777776666665554 67777777777


Q ss_pred             HHhCCCchhHHHH
Q psy16588        284 AASSPYLYETHYN  296 (341)
Q Consensus       284 l~~~p~~~~~~~~  296 (341)
                      +..+|+++..|..
T Consensus       167 LR~npdsp~Lw~e  179 (568)
T KOG2396|consen  167 LRFNPDSPKLWKE  179 (568)
T ss_pred             hhcCCCChHHHHH
Confidence            7777777766554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.35  E-value=0.0002  Score=39.16  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        294 HYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       294 ~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                      +.+||.+|..+|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555555555555555555533

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.30  E-value=0.0033  Score=43.55  Aligned_cols=102  Identities=15%  Similarity=0.121  Sum_probs=56.5

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q psy16588        126 AKIFEGLNNMPMSVKYYKLILKRDATCME---AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ  202 (341)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  202 (341)
                      +..++..|++-+|+++.+..+...+++..   .+..-|.++..+            +......+....+           
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~y-----------   59 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRY-----------   59 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHH-----------
Confidence            45677788888888888888877766553   333444444322            1111111111111           


Q ss_pred             hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      .-.++++|.++..+.|..  +..++.+|.-+-....|++++...++++.+
T Consensus        60 Ll~sve~~s~a~~Lsp~~--A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   60 LLGSVECFSRAVELSPDS--AHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHhHHHHHHHhccChhH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            123455666666666666  666666666655555666666666666554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.27  E-value=0.0055  Score=41.43  Aligned_cols=66  Identities=20%  Similarity=0.064  Sum_probs=39.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcCCHH
Q psy16588        243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLAGDLQ  308 (341)
Q Consensus       243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~  308 (341)
                      +..+++.++.+|++..+.+.++..+...|++++|++.+-.++..++++  ..+...+-.++...|.-+
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            445666777777777777777777777777777777777777766554  334444555555444433

>KOG2422|consensus

Probab=97.27  E-value=0.059  Score=48.36  Aligned_cols=156  Identities=16%  Similarity=0.086  Sum_probs=99.3

Q ss_pred             CChHHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh------------------
Q psy16588        167 DQPEVALLFYRRLLQM------------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL------------------  216 (341)
Q Consensus       167 ~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------  216 (341)
                      ..|++|...|.-+...            .|.+.+.+..++.+...+|+.+-|....++++-.                  
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            3466666666665443            4556677777888888888877777766666542                  


Q ss_pred             ---cccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH-HHhCCHHHHHHHHHHHHH-----
Q psy16588        217 ---ALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLSQNNLAVLE-AREGHIERASTYLQAAAA-----  285 (341)
Q Consensus       217 ---~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~-----  285 (341)
                         .|.+ ...-+++..-..+.+.|-+.-|.++++-.+.++|. ++.....+..+| .+..+|.=-+..++..-.     
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~  411 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS  411 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence               2222 11223344455566778888899998888888887 777666666665 455677766666666522     


Q ss_pred             hCCCchhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Q psy16588        286 SSPYLYETHYNQAVISNLAGD---LQESYNIVKKSLDLHPG  323 (341)
Q Consensus       286 ~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~  323 (341)
                      .-|+.. .-..++..|.....   .+.|...+.+|+...|.
T Consensus       412 ~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  412 QLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            234332 22345556655554   56788888888888773

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.26  E-value=0.00078  Score=35.81  Aligned_cols=31  Identities=23%  Similarity=0.200  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3455555555555555555555555555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.25  E-value=0.00076  Score=36.83  Aligned_cols=28  Identities=32%  Similarity=0.432  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                      ++.+||.+|...|++++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677888888888888888888886544

>KOG3824|consensus

Probab=97.22  E-value=0.0017  Score=53.29  Aligned_cols=78  Identities=15%  Similarity=0.039  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                      +..-.+.+.-....|+.++|...|+.++++.|++++++..+|.+....++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            445556666677889999999999999999999999999999999999999999999999999999999988876654

>PRK10941 hypothetical protein; Provisional

Probab=97.19  E-value=0.0076  Score=49.81  Aligned_cols=74  Identities=11%  Similarity=0.028  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN  296 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  296 (341)
                      .....++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.-
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            45667788889999999999999999999999999999999999999999999999999999999998876543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.18  E-value=0.14  Score=44.80  Aligned_cols=140  Identities=14%  Similarity=0.051  Sum_probs=84.5

Q ss_pred             HHHHHHHHHcCC-hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH--HHHHHHh---------cCC---C
Q psy16588        191 NNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ--CLHLALS---------IDS---S  255 (341)
Q Consensus       191 ~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~---------~~p---~  255 (341)
                      ..-|.-+...|. -++|+..++.+++..+.+  ...-+. ...+.+ ..|.+|+.  .+-+.+.         +.|   .
T Consensus       383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD--~ec~n~-v~~fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~  458 (549)
T PF07079_consen  383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYD--IECENI-VFLFVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITIS  458 (549)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHhcccc--HHHHHH-HHHHHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence            344555666666 667777777777777666  322211 111111 12222221  1111111         111   2


Q ss_pred             CHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHH
Q psy16588        256 HGLSQNNLA--VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH----SYSWD  329 (341)
Q Consensus       256 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~  329 (341)
                      +.+.-+.++  ..++..|+|.++.-+-.-..++.| ++.++..+|.++....+|++|..++.+   +-|++    ..+..
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqK  534 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQK  534 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHH
Confidence            233344443  446788999999999999999999 899999999999999999999998876   34422    23445


Q ss_pred             HHHHHHHHh
Q psy16588        330 ILRKLEQYF  338 (341)
Q Consensus       330 ~l~~~~~~~  338 (341)
                      .+.-|++++
T Consensus       535 Al~lCqKh~  543 (549)
T PF07079_consen  535 ALALCQKHL  543 (549)
T ss_pred             HHHHHHHhh
Confidence            555555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3616|consensus

Probab=97.18  E-value=0.01  Score=54.60  Aligned_cols=170  Identities=10%  Similarity=0.063  Sum_probs=99.9

Q ss_pred             cHHHHHHHcCCchHHHHHHHHH------HHh----CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHH
Q psy16588        124 NLAKIFEGLNNMPMSVKYYKLI------LKR----DATCM-EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN  192 (341)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~------l~~----~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  192 (341)
                      ..|.++.+..++++|+++|++.      +++    .|... ..-...|.-+.+.|+++.|+..|-++-.        ...
T Consensus       666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~k  737 (1636)
T KOG3616|consen  666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIK  737 (1636)
T ss_pred             hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHH
Confidence            3456777777888888887653      222    22211 1123456667778888888888776532        112


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16588        193 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH  272 (341)
Q Consensus       193 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  272 (341)
                      .........+|.+|+.+++..-.....   ...|-.++.-|...|+|+.|.++|.++=        ....-..+|.+.|+
T Consensus       738 aieaai~akew~kai~ildniqdqk~~---s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTA---SGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccc---cccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhcccc
Confidence            223344556677777766655433322   3455667777888888888888887752        22233466777888


Q ss_pred             HHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCCHHHHHHHH
Q psy16588        273 IERASTYLQAAAASSPYLY-ETHYNQAVISNLAGDLQESYNIV  314 (341)
Q Consensus       273 ~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~  314 (341)
                      +++|.+.-++...  |... ..|...+.-+-+.|++.+|.+.|
T Consensus       807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            8887776666532  3222 24444555556666666555443

>KOG3824|consensus

Probab=97.17  E-value=0.0018  Score=53.09  Aligned_cols=77  Identities=22%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      .-.+.+.-....|+.++|...|+.++.+.|.+  +.++..+|......++.-+|-.+|-+++.+.|.+.+++.+.....
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~--p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTN--PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCC--HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            34455666678899999999999999999999  999999999999999999999999999999999999988876543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.14  E-value=0.011  Score=44.15  Aligned_cols=82  Identities=15%  Similarity=-0.004  Sum_probs=52.8

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  201 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  201 (341)
                      .+.+..+-...++.+++..++..+--..|+.++.-..-|.++...|++.+|+..|+.+....|..+.+--.++.|+..+|
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            34444555556666666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             Ch
Q psy16588        202 QY  203 (341)
Q Consensus       202 ~~  203 (341)
                      +.
T Consensus        93 D~   94 (160)
T PF09613_consen   93 DP   94 (160)
T ss_pred             Ch
Confidence            54

>KOG1464|consensus

Probab=97.13  E-value=0.082  Score=43.00  Aligned_cols=190  Identities=7%  Similarity=-0.019  Sum_probs=119.8

Q ss_pred             HcCCchHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CC-cHHHHHHHHHHHHHc
Q psy16588        131 GLNNMPMSVKYYKLILKRDATCM----EAIACIGVNHFYNDQPEVALLFYRRLLQMG-----LY-NAELFNNLALCCFYS  200 (341)
Q Consensus       131 ~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~  200 (341)
                      ...+.++|+..|+++++..+...    .++-.+..+++.++++++-++.|.+.+..-     .+ +....+.+-..-...
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            34578899999999999988753    456678889999999999999998876531     11 111222222222234


Q ss_pred             CChhHHHHHHHHHHhhc--ccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHH
Q psy16588        201 QQYDMVVTCFERALSLA--LNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------------HGLSQNNLA  264 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~--~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~  264 (341)
                      .+.+--.+.|+..+..-  ..+  .-......+|.+|+..++|.+-.+.+++.-..+..            -.++|..-.
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            44444455555444321  112  00123356899999999888877777765543211            134555556


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCchh--HH----HHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLYE--TH----YNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~----~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      .+|..+++-.+-...|++++.+...-+.  +.    -.=|....+.|++++|-..|=.++.-
T Consensus       199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence            7788888888888889999876543322  21    22244466778888888877777754

>KOG0985|consensus

Probab=97.12  E-value=0.05  Score=52.12  Aligned_cols=171  Identities=9%  Similarity=-0.016  Sum_probs=82.1

Q ss_pred             HHHHHHHcCCchHHHHHHHHHH------H----------------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLIL------K----------------RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM  182 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l------~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  182 (341)
                      .|.+....+-|++|..+|++--      +                ..-+.+.+|..+|.+..+.|...+|++.|-++   
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence            3456666667777777766530      0                00123455555555555555555555555443   


Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN  262 (341)
Q Consensus       183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  262 (341)
                        +++..|..........|.|++-+.++..+-+.....   .+-..+..+|.+.++..+-.++.     ..|+.+. ...
T Consensus      1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~-i~~ 1199 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIFAYAKTNRLTELEEFI-----AGPNVAN-IQQ 1199 (1666)
T ss_pred             --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHhchHHHHHHHh-----cCCCchh-HHH
Confidence              344445555555555555555555555544432221   11222222333333332222111     1122211 223


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                      .|.-++..|.|+.|.-+|..        ..-|..|+..+..+|+|+.|...-+|+
T Consensus      1200 vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             HhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            34445555555555555432        234556666666677777766666554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.12  E-value=0.0066  Score=41.06  Aligned_cols=45  Identities=13%  Similarity=0.014  Sum_probs=19.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16588        140 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  184 (341)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  184 (341)
                      ..+++.++.+|++.++.+.++..+...|++++|++.+-.+++.++
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr   53 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR   53 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            334444444444444444444444444444444444444444433

>KOG2396|consensus

Probab=97.09  E-value=0.0083  Score=52.63  Aligned_cols=95  Identities=17%  Similarity=0.188  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC-HHHHHHHHH
Q psy16588        169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISD-TRLAIQCLH  247 (341)
Q Consensus       169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~  247 (341)
                      ...-...|+++....+.+...|........+.+.+.+--..|.+++..+|++  +++|..-+.-.+..+. .+.|...+.
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~--~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN--PDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--chhHHhhhhhHHhhccchHHHHHHHH
Confidence            3456778999999999999999999888888888999999999999999999  9999999988887776 999999999


Q ss_pred             HHHhcCCCCHHHHHHHHH
Q psy16588        248 LALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       248 ~al~~~p~~~~~~~~l~~  265 (341)
                      ++++.+|+++..|...-.
T Consensus       165 rgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  165 RGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             HHhhcCCCChHHHHHHHH
Confidence            999999999998865433

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.07  E-value=0.18  Score=44.16  Aligned_cols=203  Identities=10%  Similarity=0.086  Sum_probs=144.7

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----------------
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM----------------  182 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------  182 (341)
                      ...|+.....+...++-+.|+...++++...|.   ....++.+|....+.++-..+|+++.+.                
T Consensus       302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~  378 (660)
T COG5107         302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKV  378 (660)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccc
Confidence            366777667777888888999888888777665   6677888888777777777777765431                


Q ss_pred             --CCC-cHH-----------HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH-HHHHhcCCHHHHHHHHH
Q psy16588        183 --GLY-NAE-----------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS-HVAIGISDTRLAIQCLH  247 (341)
Q Consensus       183 --~p~-~~~-----------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~  247 (341)
                        ++. ..+           +|..+-+...+..-...|..+|-++-+..-..  ..++..-| .-+...|++.-|...|+
T Consensus       379 D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~--h~vyi~~A~~E~~~~~d~~ta~~ife  456 (660)
T COG5107         379 DNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG--HHVYIYCAFIEYYATGDRATAYNIFE  456 (660)
T ss_pred             cCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC--cceeeeHHHHHHHhcCCcchHHHHHH
Confidence              110 111           12223333334455677788888776654222  33333333 33567899999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        248 LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       248 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  325 (341)
                      -.+...|+++......-..+...++-+.|...|+.++..-.+.  ..+|..+...-..-|+...+...-++...+.|...
T Consensus       457 lGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen  536 (660)
T COG5107         457 LGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN  536 (660)
T ss_pred             HHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence            9999999998877777788899999999999999888654333  45777777778888999988888888888888764


Q ss_pred             H
Q psy16588        326 Y  326 (341)
Q Consensus       326 ~  326 (341)
                      .
T Consensus       537 ~  537 (660)
T COG5107         537 L  537 (660)
T ss_pred             H
Confidence            3

>KOG3616|consensus

Probab=97.05  E-value=0.029  Score=51.81  Aligned_cols=169  Identities=13%  Similarity=0.078  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH------Hc------------------CCCc-HHHHHHHHHHHHHcCChhHHHHHH
Q psy16588        156 IACIGVNHFYNDQPEVALLFYRRLL------QM------------------GLYN-AELFNNLALCCFYSQQYDMVVTCF  210 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~al------~~------------------~p~~-~~~~~~la~~~~~~~~~~~A~~~~  210 (341)
                      |-.++.-|...|+|+.|.++|.++-      .+                  .|.. ...|...+.-+-..|+|.+|...|
T Consensus       768 y~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  768 YGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             chHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            3456777778888888888776541      11                  1221 223444455566677777777766


Q ss_pred             ------HHHHhhcccc----------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC-------
Q psy16588        211 ------ERALSLALNE----------------NAADVWYNISHVAIGISDTRLAIQCLHLALSID------SS-------  255 (341)
Q Consensus       211 ------~~al~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~-------  255 (341)
                            .+++.+....                ...+.+..++.-+...|+...|.+.|-++-...      ..       
T Consensus       848 iti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~da  927 (1636)
T KOG3616|consen  848 ITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDA  927 (1636)
T ss_pred             EEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHH
Confidence                  3344431111                112345567777777888888888776653221      00       


Q ss_pred             ----------CHH--HHHHH---------HHHHHHhCCHHHHHHHH------HHHHH-----hCCCchhHHHHHHHHHHH
Q psy16588        256 ----------HGL--SQNNL---------AVLEAREGHIERASTYL------QAAAA-----SSPYLYETHYNQAVISNL  303 (341)
Q Consensus       256 ----------~~~--~~~~l---------~~~~~~~g~~~~A~~~~------~~al~-----~~p~~~~~~~~l~~~~~~  303 (341)
                                +..  +.+..         ...+-+.|-.+.|+..-      +-+++     .....+.++..++..+..
T Consensus       928 yriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~led 1007 (1636)
T KOG3616|consen  928 YRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLED 1007 (1636)
T ss_pred             HHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhh
Confidence                      000  00000         01122333333333321      11111     122345688889999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC
Q psy16588        304 AGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       304 ~g~~~~A~~~~~~al~~~p~~  324 (341)
                      .|++++|.++|-.+++++.-|
T Consensus      1008 egk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1008 EGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred             ccchhhhhHhhHHHhhccccc
Confidence            999999999999999987554

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.04  E-value=0.013  Score=40.76  Aligned_cols=47  Identities=13%  Similarity=0.125  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       241 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      .++++|.++..+.|..+..++.+|.-+.....|+++..-.++++.+.
T Consensus        62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            57889999999999999999999998888889999999999998763

>KOG3364|consensus

Probab=97.03  E-value=0.02  Score=41.17  Aligned_cols=81  Identities=21%  Similarity=0.190  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhC---CHHHHHHHHHHHHH-hCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        257 GLSQNNLAVLEAREG---HIERASTYLQAAAA-SSPYL-YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL  331 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  331 (341)
                      ....+++++++....   +..+.+.+++..++ -+|.. .+..+.|+..+.+.++|++++.+.+..++..|+|..+..+.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            345556666665443   34456666666665 33322 23556677777777777777777777777777777766666


Q ss_pred             HHHHHH
Q psy16588        332 RKLEQY  337 (341)
Q Consensus       332 ~~~~~~  337 (341)
                      ..+...
T Consensus       112 ~~ied~  117 (149)
T KOG3364|consen  112 ETIEDK  117 (149)
T ss_pred             HHHHHH
Confidence            655543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.01  E-value=0.018  Score=44.63  Aligned_cols=98  Identities=13%  Similarity=0.083  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCH----HHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS--SHG----LSQ  260 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~  260 (341)
                      .++..+|..|...|++++|++.|.++....... ...+.++.+..+.+..+++.....+..++-..-.  .+.    ...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            456677777777777777777777766654333 3456667777777777777777777776654422  222    123


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        261 NNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      ..-|..+...++|.+|...|-.+..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            3445566667777777777766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.93  E-value=0.11  Score=39.33  Aligned_cols=120  Identities=9%  Similarity=0.027  Sum_probs=57.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHH
Q psy16588        166 NDQPEVALLFYRRLLQMGLYN--AELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRL  241 (341)
Q Consensus       166 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~  241 (341)
                      .+..++|+..|...-+.+-..  ..+.+..+.+....|+...|+..|..+-...+..  ..-.+...-+.++...|-|++
T Consensus        71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d  150 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD  150 (221)
T ss_pred             cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence            345555665555554433222  2234455555556666666666666555444332  111233334444555555555


Q ss_pred             HHHHHHHHH-hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        242 AIQCLHLAL-SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       242 A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      -....+..- ..+|-...+.-.||..-++.|++.+|...|.+...
T Consensus       151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            444333321 11233334444455555555555555555555444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.93  E-value=0.26  Score=46.85  Aligned_cols=190  Identities=14%  Similarity=0.059  Sum_probs=121.2

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCcHH--HHHHH
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRDATC-----MEAIACIGVNHFYNDQPEVALLFYRRLLQMG----LYNAE--LFNNL  193 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~--~~~~l  193 (341)
                      .|.+....|++++|+++.+.++..-|.+     ..++..+|.+..-.|++++|..+.+.+.+..    .....  +....
T Consensus       464 ~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~  543 (894)
T COG2909         464 RAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQ  543 (894)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            4578888999999999999999887763     4567788999999999999999999887762    22222  33445


Q ss_pred             HHHHHHcCCh--hHHHHHHHHHHh----hccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC--H-HHH
Q psy16588        194 ALCCFYSQQY--DMVVTCFERALS----LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID----SSH--G-LSQ  260 (341)
Q Consensus       194 a~~~~~~~~~--~~A~~~~~~al~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~-~~~  260 (341)
                      +.++..+|+.  .+....+...-.    ..|..  .......+.++...-+++.+.......++..    |..  . ..+
T Consensus       544 s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~--~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~  621 (894)
T COG2909         544 SEILEAQGQVARAEQEKAFNLIREQHLEQKPRH--EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLAL  621 (894)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHH
Confidence            7778888833  333333332222    22322  2233333333333333666666666665543    222  2 233


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCc-hh------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        261 NNLAVLEAREGHIERASTYLQAAAASSPYL-YE------THYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      +.++.++...|++++|...+.+......+. ..      ++.-.......+|+..+|..+..+
T Consensus       622 ~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         622 SMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            588999999999999999999887654332 11      111122234457898888888777

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.1  Score=47.08  Aligned_cols=133  Identities=13%  Similarity=-0.027  Sum_probs=90.3

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHH--HHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16588        167 DQPEVALLFYRRLLQMGLYNAELFNN--LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ  244 (341)
Q Consensus       167 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  244 (341)
                      +....++..+...+..++.++..+..  +...+...+....+.-.++..+..+|.+  ..+..+++......|....+..
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~L~~ale~~~~~~~~~~  122 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN--CPAVQNLAAALELDGLQFLALA  122 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc--chHHHHHHHHHHHhhhHHHHHH
Confidence            33334666666666677777765333  3556666777777777888888888887  7788888877776666665555


Q ss_pred             HHHH-HHhcCCCCHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16588        245 CLHL-ALSIDSSHGLSQNNL------AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  301 (341)
Q Consensus       245 ~~~~-al~~~p~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  301 (341)
                      .+.+ +....|.+..+...+      +.....+|+..++...++++..+.|.++.+...+....
T Consensus       123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r  186 (620)
T COG3914         123 DISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR  186 (620)
T ss_pred             HHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence            5554 677777776665555      66667777777788888888888887766555554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.88  E-value=0.01  Score=35.44  Aligned_cols=34  Identities=24%  Similarity=0.211  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16588        260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYET  293 (341)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  293 (341)
                      ++.++..+.++|+|++|..+.+.++++.|++..+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            3444555555555555555555555555555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.85  E-value=0.23  Score=41.74  Aligned_cols=121  Identities=12%  Similarity=0.049  Sum_probs=65.4

Q ss_pred             HHcCCchHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcC----C---C-------c
Q psy16588        130 EGLNNMPMSVKYYKLILKRD----ATC----MEAIACIGVNHFYND-QPEVALLFYRRLLQMG----L---Y-------N  186 (341)
Q Consensus       130 ~~~g~~~~A~~~~~~~l~~~----~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~----p---~-------~  186 (341)
                      ..+|+++.|..++.++-...    |+.    ...+++.|......+ +++.|..+++++.+.-    +   .       .
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46777777777777765433    221    234556666666666 7777777777776551    1   0       0


Q ss_pred             HHHHHHHHHHHHHcCChh---HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        187 AELFNNLALCCFYSQQYD---MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      ..++..++.+|...+.++   +|....+.+-...|+.  +..+...-.++...++.+++.+.+.+++..
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            123555666666555443   2333333333334444  444444444444456666666666666554

It is also involved in sporulation [].

>smart00028 TPR Tetratricopeptide repeats

Probab=96.83  E-value=0.0028  Score=32.98  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      ++..+|.++...|++++|+.+|++++++.|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3445555555555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.83  E-value=0.068  Score=37.53  Aligned_cols=88  Identities=17%  Similarity=0.129  Sum_probs=48.5

Q ss_pred             HHcCChhHHHHHHHHHHhhcccc----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHH--
Q psy16588        198 FYSQQYDMVVTCFERALSLALNE----------NAADVWYNISHVAIGISDTRLAIQCLHLALSI-------DSSHGL--  258 (341)
Q Consensus       198 ~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~--  258 (341)
                      +.-|.|++|...+++++.....-          .....+..|+..+..+|+|++++....+++..       +.+...  
T Consensus        20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW   99 (144)
T PF12968_consen   20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW   99 (144)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence            34567777777777777653211          12345666777777778877777666665532       222222  


Q ss_pred             --HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        259 --SQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       259 --~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                        +.++.+..+...|+.++|+..|+.+-+
T Consensus       100 IaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen  100 IAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence              233445555556666666666655543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.80  E-value=0.25  Score=41.53  Aligned_cols=198  Identities=16%  Similarity=0.037  Sum_probs=122.2

Q ss_pred             hHhhhcHHHHHHHcC-CchHHHHHHHHHHHh----CCC----------CHHHHHHHHHHHHhcCChH---HHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLN-NMPMSVKYYKLILKR----DAT----------CMEAIACIGVNHFYNDQPE---VALLFYRRLL  180 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~----~~~----------~~~~~~~la~~~~~~~~~~---~A~~~~~~al  180 (341)
                      ....++.|......+ +++.|..+++++.+.    ...          ...++..++.+|...+.++   +|..+.+.+-
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            366888999999999 999999999999876    211          1345668888998877655   4555666666


Q ss_pred             HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCH
Q psy16588        181 QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSID--SSHG  257 (341)
Q Consensus       181 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~  257 (341)
                      ...|+.+.++...-.++...++.+++.+.+.+++...+.. ...........-+.. .....|...+...+...  |...
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~  193 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSED  193 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChh
Confidence            6778888877666666666899999999999998875422 112222222222222 34456777777766432  3222


Q ss_pred             HHHHHHHH---HHHHhC--C------HHHHHHHHHHHHHh--CCCchh-------HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        258 LSQNNLAV---LEAREG--H------IERASTYLQAAAAS--SPYLYE-------THYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       258 ~~~~~l~~---~~~~~g--~------~~~A~~~~~~al~~--~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                      . +.....   ++...+  +      .+.....+......  .|-...       .+.+.|.-.++.++|++|..+|+-+
T Consensus       194 ~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  194 Q-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             H-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            1 322222   222222  1      22233333322211  122222       4456788899999999999999977


Q ss_pred             H
Q psy16588        318 L  318 (341)
Q Consensus       318 l  318 (341)
                      +
T Consensus       273 l  273 (278)
T PF08631_consen  273 L  273 (278)
T ss_pred             H
Confidence            6

It is also involved in sporulation [].

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.78  E-value=0.0021  Score=50.42  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=44.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      ...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            3455677777777777777777777777777777777777777777777777777776543

>KOG3364|consensus

Probab=96.77  E-value=0.042  Score=39.55  Aligned_cols=72  Identities=14%  Similarity=0.132  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHcC---ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16588        188 ELFNNLALCCFYSQ---QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS  259 (341)
Q Consensus       188 ~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  259 (341)
                      ...+++++++....   +..+.+.+++..++..+.....+..+.++..+.+.++|+.++.+.+..++..|++.++
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            34444444444432   2334444455544311111123444445555555555555555555555555554433

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.15  Score=46.03  Aligned_cols=137  Identities=13%  Similarity=0.019  Sum_probs=106.3

Q ss_pred             cCCchH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16588        132 LNNMPM-SVKYYKLILKRDATCMEAIAC--IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  208 (341)
Q Consensus       132 ~g~~~~-A~~~~~~~l~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  208 (341)
                      .+.... ++..+...+..++.++..+..  +...+...+....+.-.+...+..+|.+..+..+|+..+...|....+..
T Consensus        43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~  122 (620)
T COG3914          43 AEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALA  122 (620)
T ss_pred             ccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHH
Confidence            344444 667777777788888777443  47777788999899999999999999999999999999888877777666


Q ss_pred             HHHH-HHhhccccchHHHHHH------HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        209 CFER-ALSLALNENAADVWYN------ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       209 ~~~~-al~~~~~~~~~~~~~~------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                      .+.. +....|.+  ......      ++.....+|+..++.....++....|.++.+...+.....+.
T Consensus       123 ~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~  189 (620)
T COG3914         123 DISEIAEWLSPDN--AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ  189 (620)
T ss_pred             HHHHHHHhcCcch--HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence            6555 88888888  555444      488888899999999999999999999877766655553333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.76  E-value=0.11  Score=36.61  Aligned_cols=98  Identities=12%  Similarity=0.081  Sum_probs=70.1

Q ss_pred             HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---
Q psy16588        223 ADVWYNISHV--AIGISDTRLAIQCLHLALSIDSS------------HGLSQNNLAVLEAREGHIERASTYLQAAAA---  285 (341)
Q Consensus       223 ~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---  285 (341)
                      ..+|..|+..  ....|-|++|...++++......            +.-.+..|+.++..+|+|++++..-.+++.   
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            3444444443  45668999999999999876422            234667788999999999998877777664   


Q ss_pred             ----hCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        286 ----SSPYLYE----THYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       286 ----~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                          ++.+...    +-++.+..+...|+.++|+..|+++-+.
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                4555444    4467888999999999999999998754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3783|consensus

Probab=96.75  E-value=0.34  Score=43.45  Aligned_cols=211  Identities=15%  Similarity=0.085  Sum_probs=121.0

Q ss_pred             cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16588        111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT--CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  188 (341)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  188 (341)
                      ..|.++   .-.+..+..+...|+.+.|+.+++..+...-.  ..-.++.+|.++..+.+|..|-..+...........-
T Consensus       262 ~~p~ga---~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a  338 (546)
T KOG3783|consen  262 RYPKGA---LWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHA  338 (546)
T ss_pred             hCCCCc---cHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHH
Confidence            344444   33444556667777777777777777661100  1234557777777788888888888887776665555


Q ss_pred             HHHHHH-HHHHH--------cCChhHHHHHHHHHH---hhccccc--------h--------------HH--HHHHHHHH
Q psy16588        189 LFNNLA-LCCFY--------SQQYDMVVTCFERAL---SLALNEN--------A--------------AD--VWYNISHV  232 (341)
Q Consensus       189 ~~~~la-~~~~~--------~~~~~~A~~~~~~al---~~~~~~~--------~--------------~~--~~~~la~~  232 (341)
                      .|..++ -|++.        .|+-++|..+++...   ...|++.        .              ..  -++.++.+
T Consensus       339 ~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~  418 (546)
T KOG3783|consen  339 FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYF  418 (546)
T ss_pred             HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHH
Confidence            555444 33322        223333333333222   2211110        0              00  11222222


Q ss_pred             HHh--cCCHHHHHHHHHHHH---hc-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CC----chhHHHHHH
Q psy16588        233 AIG--ISDTRLAIQCLHLAL---SI-DSSH-GLSQNNLAVLEAREGHIERASTYLQAAAASS---PY----LYETHYNQA  298 (341)
Q Consensus       233 ~~~--~g~~~~A~~~~~~al---~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~l~  298 (341)
                      +..  ....++..+ ++..+   +. ++++ .-.+..+|.++..+|+...|..+|+..++..   ..    .+.+++.+|
T Consensus       419 Wngf~~~s~~~l~k-~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA  497 (546)
T KOG3783|consen  419 WNGFSRMSKNELEK-MRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELA  497 (546)
T ss_pred             HhhcccCChhhHHH-HHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence            211  111222221 11111   11 2222 2245678999999999999999999988431   11    245899999


Q ss_pred             HHHHHcCC-HHHHHHHHHHHHhcCCCCH
Q psy16588        299 VISNLAGD-LQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       299 ~~~~~~g~-~~~A~~~~~~al~~~p~~~  325 (341)
                      ..|..+|. ..++..++.+|.....++.
T Consensus       498 ~l~~~~~g~~~e~~~~L~kAr~~~~dY~  525 (546)
T KOG3783|consen  498 LLYWDLGGGLKEARALLLKAREYASDYE  525 (546)
T ss_pred             HHHHhcccChHHHHHHHHHHHhhccccc
Confidence            99999999 9999999999998876653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.75  E-value=0.069  Score=41.39  Aligned_cols=99  Identities=14%  Similarity=0.059  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--chh----H
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPY--LYE----T  293 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~  293 (341)
                      ..++..+|..|.+.|++++|++.|.++.......   .+.+.++..+....+++..+..++.++-.....  +..    .
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            5788999999999999999999999998876433   567788889999999999999999998765432  222    3


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        294 HYNQAVISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       294 ~~~l~~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                      ...-|..+...++|.+|...|-.+..-.
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            3345677778899999999988776444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.72  E-value=0.01  Score=51.89  Aligned_cols=124  Identities=10%  Similarity=-0.046  Sum_probs=83.2

Q ss_pred             hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16588        165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ  244 (341)
Q Consensus       165 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  244 (341)
                      ..|+.-.|-.-...++...|.++......+.+....|+|+.+...+.-+-..-...  ..+...+-.....+|++++|..
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~--~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT--DSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC--chHHHHHHHhhhchhhHHHHHH
Confidence            45666667666777777777777777777777777777777777665554443333  4445555556667777777777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16588        245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       245 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      ...-.+...-+++++...-+.....+|-++++..++++.+.++|..
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            7777776666666666555555666677777777777777776643

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.71  E-value=0.049  Score=43.55  Aligned_cols=86  Identities=17%  Similarity=0.080  Sum_probs=39.7

Q ss_pred             CChHHHHHHHHHHHHc----C-C--CcHHHHHHHHHHHHHcCChhH-------HHHHHHHHHhhccc--c--chHHHHHH
Q psy16588        167 DQPEVALLFYRRLLQM----G-L--YNAELFNNLALCCFYSQQYDM-------VVTCFERALSLALN--E--NAADVWYN  228 (341)
Q Consensus       167 ~~~~~A~~~~~~al~~----~-p--~~~~~~~~la~~~~~~~~~~~-------A~~~~~~al~~~~~--~--~~~~~~~~  228 (341)
                      ..+++|++.|.-|+-.    . +  .-+..+..+|++|...|+.+.       |++.|++++.....  .  ....+.+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            3455555555554421    1 1  123455566666666666333       33333333332211  1  12334455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        229 ISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       229 la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      +|.+..+.|++++|..+|.+++..
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcC
Confidence            555555555555555555555543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.68  E-value=0.0041  Score=32.32  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSP  288 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  288 (341)
                      ++..+|.++...|++++|+..|++++++.|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2041|consensus

Probab=96.66  E-value=0.093  Score=48.32  Aligned_cols=53  Identities=13%  Similarity=-0.007  Sum_probs=29.8

Q ss_pred             HHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16588        197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA  249 (341)
Q Consensus       197 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  249 (341)
                      +...|+|-...+.++..-.-..+...-.++.++|..+..+..|++|.++|.+.
T Consensus       770 r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  770 RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445554444444432211111133567777888777777787777777664

>KOG1310|consensus

Probab=96.63  E-value=0.0089  Score=52.82  Aligned_cols=99  Identities=18%  Similarity=0.117  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGI---SDTRLAIQCLHLALSIDSSHGLSQNNLAVL  266 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  266 (341)
                      +..-|.--+..+.+..++..|.+++...|..  ...+.+.+.++++.   |+.-.|+.-...+++++|....+++.|+.+
T Consensus       377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~--~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~a  454 (758)
T KOG1310|consen  377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDA--IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA  454 (758)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhhhccch--hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence            3333333344455666667777777766666  66666666666553   344455666666666666666677777777


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCc
Q psy16588        267 EAREGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       267 ~~~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      +..++++.+|+.+...+....|.+
T Consensus       455 L~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  455 LNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHhhHHHhhhhHHHHhhcCchh
Confidence            777777777776666665555543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.63  E-value=0.042  Score=48.28  Aligned_cols=127  Identities=9%  Similarity=-0.095  Sum_probs=104.1

Q ss_pred             HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16588        129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  208 (341)
Q Consensus       129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  208 (341)
                      ....|+.-.|-..+..++...|.++......+.++..+|+|+.+...+.-+-..-.........+-......|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            45679999999999999999999999999999999999999999988766554433344455556667778899999999


Q ss_pred             HHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        209 CFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG  257 (341)
Q Consensus       209 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  257 (341)
                      .-.-.+...-++  +++...-+.....+|-++++..++++.+.++|...
T Consensus       379 ~a~~~l~~eie~--~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        379 TAEMMLSNEIED--EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHhccccCC--hhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            988888777676  77777777777788999999999999999987643

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.62  E-value=0.066  Score=42.82  Aligned_cols=87  Identities=14%  Similarity=0.178  Sum_probs=48.2

Q ss_pred             cCChhHHHHHHHHHHhhc----ccc-chHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHhcCC------CCHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLA----LNE-NAADVWYNISHVAIGISDTRLAIQCLHL-------ALSIDS------SHGLSQN  261 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~-------al~~~p------~~~~~~~  261 (341)
                      ...+++|++.|.-|+-..    ... ..+..+..+|.+|...|+.+....++++       ++....      +...+.+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            345666666666554431    111 3467788889999888885544444443       333221      1134455


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        262 NLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                      .+|.+..+.|++++|+.+|.+++..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            5566666666666666666665543

>KOG3807|consensus

Probab=96.61  E-value=0.35  Score=40.67  Aligned_cols=122  Identities=13%  Similarity=0.090  Sum_probs=76.1

Q ss_pred             cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------------------
Q psy16588        124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------------------  185 (341)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------  185 (341)
                      .+.....+..+..+-++....+++++|+.+.++..++.--  ..-..+|.++|+++++....                  
T Consensus       189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~  266 (556)
T KOG3807|consen  189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ  266 (556)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence            3445666777888888888899999999888888777532  23456777788777753210                  


Q ss_pred             -----c--HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy16588        186 -----N--AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLH  247 (341)
Q Consensus       186 -----~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  247 (341)
                           +  ..+...++.|..++|+..+|++.++...+-.|-.....++-++...+....-|.+....+-
T Consensus       267 ~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa  335 (556)
T KOG3807|consen  267 LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA  335 (556)
T ss_pred             hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0  1123456777777777777777777766655533233445555555555554444444333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.54  E-value=0.0042  Score=48.84  Aligned_cols=61  Identities=16%  Similarity=0.194  Sum_probs=55.9

Q ss_pred             HHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        195 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG  257 (341)
Q Consensus       195 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  257 (341)
                      ......++.+.+.+.|.+++.+.|..  ...|+.+|....+.|+++.|...|++.++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w--~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEW--AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchh--hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34567889999999999999999999  99999999999999999999999999999998874

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.53  E-value=0.23  Score=37.63  Aligned_cols=144  Identities=12%  Similarity=0.072  Sum_probs=104.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHH
Q psy16588        161 VNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR  240 (341)
Q Consensus       161 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~  240 (341)
                      .-|++.+.-.++-..|..+++               +...++.++|+..|...-+-.-.....-+....+.+..+.|+..
T Consensus        47 y~yw~~s~as~sgd~flaAL~---------------lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta  111 (221)
T COG4649          47 YTYWQTSRASKSGDAFLAALK---------------LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTA  111 (221)
T ss_pred             eehhcccccccchHHHHHHHH---------------HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHH
Confidence            344555555555555555554               33567889999999887665544433556788899999999999


Q ss_pred             HHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16588        241 LAIQCLHLALSIDSS--H--GLSQNNLAVLEAREGHIERASTYLQAAAA-SSPYLYETHYNQAVISNLAGDLQESYNIVK  315 (341)
Q Consensus       241 ~A~~~~~~al~~~p~--~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  315 (341)
                      .|+..|.++-+..+-  -  ..+...-+.++...|.|++.....+..-. .+|--..+.-.||..-++.|++.+|..+|.
T Consensus       112 ~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~  191 (221)
T COG4649         112 AAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV  191 (221)
T ss_pred             HHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence            999999998776532  1  22445567778899999988777665432 234444577889999999999999999999


Q ss_pred             HHHh
Q psy16588        316 KSLD  319 (341)
Q Consensus       316 ~al~  319 (341)
                      +...
T Consensus       192 qia~  195 (221)
T COG4649         192 QIAN  195 (221)
T ss_pred             HHHc
Confidence            9876

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.52  E-value=0.27  Score=43.08  Aligned_cols=125  Identities=16%  Similarity=0.111  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH--HHHHHHhh---------cccc-ch
Q psy16588        156 IACIGVNHFYNDQ-PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT--CFERALSL---------ALNE-NA  222 (341)
Q Consensus       156 ~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~---------~~~~-~~  222 (341)
                      +..-|.-++..|. -++|+..++.+++..+.+..+-+..- .+. ...|.+|+.  .+-+.+.+         .|-. ..
T Consensus       382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~-~fv-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e  459 (549)
T PF07079_consen  382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF-LFV-KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE  459 (549)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH-HHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence            3345666677776 88999999999999998875533221 111 122333322  12222221         2222 12


Q ss_pred             HHHHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        223 ADVWYNI--SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       223 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      .+.-+-+  |..++.+|+|.++.-+-.-..++.| ++.++..+|.++....+|++|..++...
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            3344444  3456789999999999999999999 8999999999999999999999999763

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4814|consensus

Probab=96.50  E-value=0.041  Score=49.93  Aligned_cols=98  Identities=19%  Similarity=0.161  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA  264 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  264 (341)
                      ++.+-|.-+++..+|..+++.|...+..-|.+    .+.....++..||..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34556677788899999999999999987766    34667888999999999999999999999999999988888888


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHh
Q psy16588        265 VLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~  286 (341)
                      .+....|.-++|+.........
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            8888889999999988877654

>KOG1839|consensus

Probab=96.49  E-value=0.04  Score=54.14  Aligned_cols=160  Identities=15%  Similarity=0.107  Sum_probs=119.2

Q ss_pred             HHHHHHHcCCchHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCcHHH
Q psy16588        125 LAKIFEGLNNMPMSVK------YYKLIL-KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAEL  189 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~------~~~~~l-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~  189 (341)
                      .|......|.+.++.+      ++.... ...|.....+..++.++...++.++|+..-.++.-+        .|+....
T Consensus       938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen  938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred             hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence            3455556677776666      554332 346677888899999999999999999988777543        3556677


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhh--------ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSL--------ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDS-------  254 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------  254 (341)
                      +.+++...+..++...|+..+.++..+        .|..  .....+++.++...++++.|+++.+.|++...       
T Consensus      1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~--a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT--ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred             hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch--hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence            888888888888888999988888775        3444  66678888888888999999999999987542       


Q ss_pred             -CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        255 -SHGLSQNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       255 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                       .....+..++..+...+++..|....+....+
T Consensus      1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence             12455667778888888888877777766554

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.48  E-value=0.012  Score=48.55  Aligned_cols=73  Identities=8%  Similarity=-0.082  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN-LAVLEAREGHIERASTYLQAAAASSPYLYETHY  295 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  295 (341)
                      +..|...+....+.+-+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.+++.++|+++..|.
T Consensus       107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            4455554444444455555555555555555555555443 233334445555555555555555555554443

>KOG3807|consensus

Probab=96.44  E-value=0.46  Score=39.99  Aligned_cols=174  Identities=12%  Similarity=0.024  Sum_probs=107.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccc-----------------
Q psy16588        157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN-----------------  219 (341)
Q Consensus       157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----------------  219 (341)
                      +.+-.......+..+-++....+++++|+.+.++..++.--  .--..+|...++++++....                 
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence            34444445556777788888999999999999988887643  23455677777777664110                 


Q ss_pred             ------cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCc
Q psy16588        220 ------ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH--GLSQNNLAVLEAREGHIERASTYLQAAAASS-PYL  290 (341)
Q Consensus       220 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~  290 (341)
                            +....+...++.|..++|+..+|++.++...+..|-.  ..++-++...+....-|.+....+-+.-++. |.+
T Consensus       266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkS  345 (556)
T KOG3807|consen  266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKS  345 (556)
T ss_pred             hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcch
Confidence                  0112234568999999999999999999988877732  2344556666666666665555554443332 333


Q ss_pred             hhHHHHHHHHH-------------HHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        291 YETHYNQAVIS-------------NLAGD---LQESYNIVKKSLDLHPGHSYSWDILR  332 (341)
Q Consensus       291 ~~~~~~l~~~~-------------~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~  332 (341)
                      ....+.-+.+-             .+.|-   -..|++.+.++++.+|.-+.....+.
T Consensus       346 A~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k  403 (556)
T KOG3807|consen  346 AAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK  403 (556)
T ss_pred             HHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence            32222211111             11111   13578889999999998877554443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.43  E-value=0.24  Score=36.59  Aligned_cols=74  Identities=16%  Similarity=-0.005  Sum_probs=41.2

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16588        234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDL  307 (341)
Q Consensus       234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  307 (341)
                      ...++.+++...+...--+.|+.+.+-..-|.++...|++.+|+..|+...+-.+..+...-.++.|+..+|+.
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            33555555555555555555555555555555556666666666666555555444444445555555555553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.41  E-value=0.06  Score=39.62  Aligned_cols=77  Identities=13%  Similarity=-0.127  Sum_probs=49.9

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY  203 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  203 (341)
                      ......++.+++..++...--+.|+.++.-..-|.++...|++.+|+..|+......+..+...-.++.|+..+|+.
T Consensus        18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            34444666666666666666666766666666677777777777777777766666666666666666666665543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0890|consensus

Probab=96.40  E-value=0.54  Score=49.51  Aligned_cols=114  Identities=14%  Similarity=0.065  Sum_probs=80.0

Q ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CC----------
Q psy16588        221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS-PY----------  289 (341)
Q Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~----------  289 (341)
                      ...+.|...|++....|+++.|..++-+|.+..  -+.++...|..++..|+-..|+..+++.++.+ |+          
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence            346778888888888888888888888887765  46778888888888898888998888888654 22          


Q ss_pred             ch------hHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        290 LY------ETHYNQAVISNLAGDL--QESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       290 ~~------~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      ..      .+...++......+++  ..-+++|..+.++.|...+.++.+++...
T Consensus      1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence            11      1333444455555553  34567888888888877666666664443

>KOG4814|consensus

Probab=96.25  E-value=0.072  Score=48.44  Aligned_cols=97  Identities=13%  Similarity=0.034  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16588        225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  298 (341)
                      ++.+-|.-+++..+|..++++|...+..-|.+      .....+++.+|..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            44556677788899999999999999877655      456788999999999999999999999999999998888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        299 VISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       299 ~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                      .+....|+-++|+.+..+.....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhhh
Confidence            88899999999999988877553

>KOG1310|consensus

Probab=96.23  E-value=0.023  Score=50.38  Aligned_cols=100  Identities=14%  Similarity=0.087  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---cCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY---SQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      ...-|.-.+..+....++..|.+++...|.....+.+.+.++++   .|+.-.|+.-+..++.++|..  ..+|+.|+.+
T Consensus       377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~--~kah~~la~a  454 (758)
T KOG1310|consen  377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI--QKAHFRLARA  454 (758)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH--HHHHHHHHHH
Confidence            33334333444556778888888888888888888888877776   356667788888888888888  8889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHG  257 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~  257 (341)
                      +..++++.+|+.+...+.-..|.+.
T Consensus       455 L~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  455 LNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHhhHHHhhhhHHHHhhcCchhh
Confidence            9999999999888877777777543

>KOG1839|consensus

Probab=96.17  E-value=0.078  Score=52.21  Aligned_cols=163  Identities=16%  Similarity=0.097  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhcCChHHHHH------HHHH-HHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--------ccc
Q psy16588        156 IACIGVNHFYNDQPEVALL------FYRR-LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--------LNE  220 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~  220 (341)
                      ....+......|.+.++.+      ++.. .-.+.|.....+..++.++...+++++|+..-.++.-+.        |+.
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence            4455555556666776666      5552 334578889999999999999999999999888776542        333


Q ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---
Q psy16588        221 NAADVWYNISHVAIGISDTRLAIQCLHLALSI--------DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY---  289 (341)
Q Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---  289 (341)
                        ...+.+++...+..++...|+..+.++..+        .|.-.....+++.++...++++.|+.+++.|+..+..   
T Consensus      1015 --~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1015 --KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred             --HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence              667888888888888999999998888765        3444556678888888999999999999999885421   


Q ss_pred             -----chhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        290 -----LYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       290 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                           ....+..++..+..++++..|....+....+
T Consensus      1093 ~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence                 2336677888888888888888777766643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.02  E-value=0.52  Score=42.33  Aligned_cols=130  Identities=17%  Similarity=0.189  Sum_probs=79.1

Q ss_pred             HHHHcCCchHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhH
Q psy16588        128 IFEGLNNMPMSVKYYK--LILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM  205 (341)
Q Consensus       128 ~~~~~g~~~~A~~~~~--~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  205 (341)
                      .....++++++..+..  +.+..-|  ..-...++..+.+.|-.+.|+...+        +++..+.|+   .+.|+++.
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~  336 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDI  336 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHH
T ss_pred             HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHH
Confidence            4455788888777765  2222222  3446677778888888888877643        445555544   46788888


Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      |.+..++.     ++  ...|..+|...+.+|+++-|.++|+++-        -+..+..+|.-.|+.+.=.+..+.+..
T Consensus       337 A~~~a~~~-----~~--~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~  401 (443)
T PF04053_consen  337 ALEIAKEL-----DD--PEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE  401 (443)
T ss_dssp             HHHHCCCC-----ST--HHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhc-----Cc--HHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence            87665432     34  7799999999999999999999998863        234455667777777655555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.01  E-value=0.02  Score=32.08  Aligned_cols=27  Identities=33%  Similarity=0.316  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      ++.++|.+|...|++++|+.++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344455555555555555555555444

>KOG2581|consensus

Probab=95.98  E-value=0.45  Score=41.12  Aligned_cols=100  Identities=11%  Similarity=0.036  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CC--CchhH
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQNNLAVLEAREGHIERASTYLQAAAAS--SP--YLYET  293 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p--~~~~~  293 (341)
                      ..|+.+..+|...|+...-...+...+...      ...+...+.+-..|...+.|+.|.....+..--  ..  .....
T Consensus       170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY  249 (493)
T KOG2581|consen  170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY  249 (493)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence            345555555555555444444444433321      111223344445555555565555555444310  00  11224


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        294 HYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       294 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      .+.+|.+..-+++|..|.++|-+++...|+
T Consensus       250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            445566666666666666666666666665

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.83  E-value=0.024  Score=31.72  Aligned_cols=30  Identities=23%  Similarity=0.194  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      ..++.++|.+|...|++++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            456788888888888888888888888765

>KOG0529|consensus

Probab=95.82  E-value=0.76  Score=39.90  Aligned_cols=89  Identities=7%  Similarity=0.008  Sum_probs=40.7

Q ss_pred             cCCch-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------------ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        132 LNNMP-MSVKYYKLILKRDATCMEAIACIGVNHFYND------------QPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       132 ~g~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      .|.++ ++++.=.+.+..+|+...+|...-.++....            .+++-+.+...+++.+|++..+|+....++.
T Consensus        41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~  120 (421)
T KOG0529|consen   41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQ  120 (421)
T ss_pred             ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34443 3555556666666666655554333332111            1233333444444444444444444444444


Q ss_pred             HcCC--hhHHHHHHHHHHhhcccc
Q psy16588        199 YSQQ--YDMVVTCFERALSLALNE  220 (341)
Q Consensus       199 ~~~~--~~~A~~~~~~al~~~~~~  220 (341)
                      +.+.  +..=+.+++++++.+|.+
T Consensus       121 ~~p~~~~~~EL~lcek~L~~D~RN  144 (421)
T KOG0529|consen  121 KNPHSDWNTELQLCEKALKQDPRN  144 (421)
T ss_pred             hCCCchHHHHHHHHHHHHhcCccc
Confidence            3332  334444444444444444

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.75  E-value=0.02  Score=47.27  Aligned_cols=88  Identities=11%  Similarity=0.109  Sum_probs=72.1

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16588        175 FYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN-ISHVAIGISDTRLAIQCLHLALSID  253 (341)
Q Consensus       175 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~  253 (341)
                      .|.++....++++..|...+......+.|.+--..|.+++..+|.+  ++.|.. -+.-+...++++.+...|.++++.+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n--vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N  172 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN--VDLWIYCCAFELFEIANIESSRAMFLKGLRMN  172 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence            4455556678888888888888888888999999999999999999  888876 5566777889999999999999999


Q ss_pred             CCCHHHHHHHH
Q psy16588        254 SSHGLSQNNLA  264 (341)
Q Consensus       254 p~~~~~~~~l~  264 (341)
                      |+++..|...-
T Consensus       173 ~~~p~iw~eyf  183 (435)
T COG5191         173 SRSPRIWIEYF  183 (435)
T ss_pred             CCCchHHHHHH
Confidence            99988876543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=95.69  E-value=1.5  Score=39.34  Aligned_cols=198  Identities=12%  Similarity=0.050  Sum_probs=125.0

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  201 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  201 (341)
                      ...+-.++.+..+..--..++.+++.... +..+++.++.+|... ..+.-...+++.++.+-++...-..|+..|.. +
T Consensus        69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i  145 (711)
T COG1747          69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I  145 (711)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h
Confidence            33333455555555556677788777654 677889999999988 56777888999999998888888888888876 8


Q ss_pred             ChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHhCCHHH
Q psy16588        202 QYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-HGLS-QNNLAVLEAREGHIER  275 (341)
Q Consensus       202 ~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~l~~~~~~~g~~~~  275 (341)
                      +...+..+|.+++...-..    ...++|-.+-..  --.+.+.-+....+.-..... ...+ +..+-.-|....++.+
T Consensus       146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e  223 (711)
T COG1747         146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE  223 (711)
T ss_pred             chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence            8899999999988753221    112233333221  122333333333333222211 1222 2223344566788999


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCCC
Q psy16588        276 ASTYLQAAAASSPYLYETHYNQAVISNL--------------------AGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       276 A~~~~~~al~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~  324 (341)
                      |+..+...++.+..+..+.-++...+..                    -.++.+++.-|++.+..+..|
T Consensus       224 ai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn  292 (711)
T COG1747         224 AIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN  292 (711)
T ss_pred             HHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence            9999999999888887777766666554                    345556666666666554433

>KOG2041|consensus

Probab=95.61  E-value=0.5  Score=43.81  Aligned_cols=80  Identities=8%  Similarity=-0.038  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL  266 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  266 (341)
                      ..++.++|..+.....|++|.++|.+.-..          -++..+++....|++-    +.....-|++...+-.+|.+
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~m  861 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADM  861 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHH
Confidence            356778888888888888888877665221          1233444444444432    22222335555555555555


Q ss_pred             HHHhCCHHHHHHHH
Q psy16588        267 EAREGHIERASTYL  280 (341)
Q Consensus       267 ~~~~g~~~~A~~~~  280 (341)
                      +...|.-++|.+.|
T Consensus       862 f~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  862 FTSVGMCDQAVEAY  875 (1189)
T ss_pred             HHhhchHHHHHHHH
Confidence            55555555555444

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.52  E-value=2.3  Score=40.30  Aligned_cols=197  Identities=12%  Similarity=-0.002  Sum_probs=117.4

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHcCC
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRD---AT------CMEAIACIGVNHFYNDQPEVALLFYR--------RLLQMGL  184 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~p  184 (341)
                      .+..+....-.+++..+...+..+....   |.      .+..++..|..+...|+.+.|+.+|.        .+....+
T Consensus       364 ~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~  443 (608)
T PF10345_consen  364 LFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK  443 (608)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc
Confidence            3445667778899999998888776543   22      36778899999999999999999998        3333333


Q ss_pred             CcH---HHHHHHHHHHHHcCChhH----HHHHHHHHHhh---ccccchHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhc
Q psy16588        185 YNA---ELFNNLALCCFYSQQYDM----VVTCFERALSL---ALNENAADVWYNISHVA--IGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       185 ~~~---~~~~~la~~~~~~~~~~~----A~~~~~~al~~---~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~  252 (341)
                      .+.   .+..++..++...+.-..    +...+++.-..   .+......++..+-.++  ...-...++...+.++++.
T Consensus       444 ~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~  523 (608)
T PF10345_consen  444 FRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKM  523 (608)
T ss_pred             chHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHH
Confidence            332   234455666665554333    33444333221   11111111222222222  1223344777777777765


Q ss_pred             C-C---CC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hh-HHH-----HHHHHHHHcCCHHHHHHHHHH
Q psy16588        253 D-S---SH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YE-THY-----NQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       253 ~-p---~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~-~~~-----~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      . .   +.   .-++..++..++ .|+..+.......+.......   .. .|.     .+...+...|+.++|.....+
T Consensus       524 ~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~  602 (608)
T PF10345_consen  524 ANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQ  602 (608)
T ss_pred             HHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            4 1   11   224555666665 788888777777777654433   33 342     456668889999999988877


Q ss_pred             HHh
Q psy16588        317 SLD  319 (341)
Q Consensus       317 al~  319 (341)
                      ...
T Consensus       603 ~~~  605 (608)
T PF10345_consen  603 LDR  605 (608)
T ss_pred             HHH
Confidence            654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.51  E-value=2.3  Score=40.28  Aligned_cols=181  Identities=14%  Similarity=0.106  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCC--cHH----HHHHHHHHHHHcCChh
Q psy16588        136 PMSVKYYKLILKRDAT----CMEAIACIGVNHF-YNDQPEVALLFYRRLLQMGLY--NAE----LFNNLALCCFYSQQYD  204 (341)
Q Consensus       136 ~~A~~~~~~~l~~~~~----~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~~~~~  204 (341)
                      ..|+.+++-+++..+-    ...+.+.+|.++. ...+++.|..++.+++.+...  ..+    +.+.++.++...+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            4567777777742221    3556788899888 778999999999999877643  222    3456788888877777


Q ss_pred             HHHHHHHHHHhhcccc--chHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHHhCCHH
Q psy16588        205 MVVTCFERALSLALNE--NAADVWYNIS--HVAIGISDTRLAIQCLHLALSID--SSHGLS----QNNLAVLEAREGHIE  274 (341)
Q Consensus       205 ~A~~~~~~al~~~~~~--~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~l~~~~~~~g~~~  274 (341)
                       |...+++.++.....  ......+.+-  ..+...+++..|++.++......  ..++.+    ....+.++...+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             999999998876552  0122222222  22333479999999999988776  344332    233455666778788


Q ss_pred             HHHHHHHHHHHhCC------C----chhHHHHHHHH--HHHcCCHHHHHHHHHHH
Q psy16588        275 RASTYLQAAAASSP------Y----LYETHYNQAVI--SNLAGDLQESYNIVKKS  317 (341)
Q Consensus       275 ~A~~~~~~al~~~p------~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~a  317 (341)
                      ++++..+++.....      +    ...+|..+-.+  +...|+++.+...+++.
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888888754321      1    12345444443  45567766666655443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2581|consensus

Probab=95.50  E-value=1.5  Score=38.07  Aligned_cols=131  Identities=14%  Similarity=0.059  Sum_probs=92.7

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCC-C--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcHHHHH
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDA-T--------CMEAIACIGVNHFYNDQPEVALLFYRRLLQM-----GL-YNAELFN  191 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~-~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p-~~~~~~~  191 (341)
                      ..++.+.++.+|..+-+..+..-- .        .+..|+.+..+|...|+...-...+...+..     +. ......+
T Consensus       134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN  213 (493)
T KOG2581|consen  134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN  213 (493)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence            334556889999888777654311 1        2456778888888888866655555544432     22 2234566


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhccc--cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        192 NLALCCFYSQQYDMVVTCFERALSLALN--ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG  257 (341)
Q Consensus       192 ~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  257 (341)
                      .|-..|...+.|+.|-....+..--...  +.....++.+|.+..-+++|..|.+++-+|+...|++.
T Consensus       214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            7778888899999999888877522111  13367788899999999999999999999999999753

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.44  E-value=0.18  Score=41.24  Aligned_cols=77  Identities=16%  Similarity=-0.000  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      ...++-..+...++++.|....++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-....++.
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            34455566777788888888888888888888777777888888888888888888887888887776655544443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.23  E-value=0.15  Score=42.19  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      ..++..++..+...|+++.+++.+++.+..+|.+-..|..+-..|...|+...|+..|++.-.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            556666666666667777777777777777776666676666677777777777766666554

>KOG2422|consensus

Probab=95.18  E-value=2.4  Score=38.62  Aligned_cols=155  Identities=12%  Similarity=0.033  Sum_probs=101.5

Q ss_pred             HcCCchHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----------------
Q psy16588        131 GLNNMPMSVKYYKLILKR------------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM----------------  182 (341)
Q Consensus       131 ~~g~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------  182 (341)
                      ....|+++...|.-+...            .|-+.+.+..++.+...+|+.+-|-...++++=.                
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            345677888887777553            4667888999999999999988777777766521                


Q ss_pred             -----CCCcHH---HHHHHHHHHHHcCChhHHHHHHHHHHhhccc-cchHHHHHHHHHHH-HhcCCHHHHHHHHHHHHh-
Q psy16588        183 -----GLYNAE---LFNNLALCCFYSQQYDMVVTCFERALSLALN-ENAADVWYNISHVA-IGISDTRLAIQCLHLALS-  251 (341)
Q Consensus       183 -----~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~-  251 (341)
                           .|.+-.   +.+..-..+.+.|-+..|.++++-.+.++|. +  +.+...+...| ....+|.=-+..++..-. 
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eD--Pl~~l~~ID~~ALrareYqwiI~~~~~~e~~  407 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSED--PLGILYLIDIYALRAREYQWIIELSNEPENM  407 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCC--chhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence                 122222   2333344556689999999999999999998 5  55444444444 455666666666665522 


Q ss_pred             ----cCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCC
Q psy16588        252 ----IDSSHGLSQNNLAVLEAREGH---IERASTYLQAAAASSP  288 (341)
Q Consensus       252 ----~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p  288 (341)
                          .-|+.+ .-..++..|.....   -..|...+.+|+...|
T Consensus       408 n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  408 NKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             ccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence                234322 22345555555544   5678888888887766

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.16  E-value=0.17  Score=34.61  Aligned_cols=27  Identities=41%  Similarity=0.333  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        260 QNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                      +.+++.++...|++++|+..+++++.+
T Consensus        44 ll~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   44 LLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            334444444444444444444444443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.13  E-value=0.51  Score=46.25  Aligned_cols=133  Identities=13%  Similarity=0.044  Sum_probs=97.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        193 LALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGI----S---DTRLAIQCLHLALSIDSSHGLSQNNLA  264 (341)
Q Consensus       193 la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l~  264 (341)
                      ....+...+.|+.|+..|++.-.-.|.. .-.++.+..|..+..+    |   .+++|+..|++.. -.|.-+--|...+
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence            3467777889999999999999888876 4467788888777543    2   4667777776643 3466677888899


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCchhHH-------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLYETH-------YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  328 (341)
                      .+|.++|+|++-+++|.-+++..|+++..-       +.|=.+...  +...|....--++...|......
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  628 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISSR  628 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccch
Confidence            999999999999999999999998887632       233333322  33456677777788888765443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.10  E-value=0.16  Score=34.66  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=25.3

Q ss_pred             HcCChhHHHHHHHHHHhhcccc-c------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        199 YSQQYDMVVTCFERALSLALNE-N------AADVWYNISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~-~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      ..|+|.+|++.+.+.+...... .      ...+..+++.++...|++++|+..+++++++
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3455555555555554443322 0      1223444555555555555555555555544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.94  E-value=0.42  Score=39.67  Aligned_cols=62  Identities=11%  Similarity=0.021  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      .++..++..+...|+++.++..+++.+..+|-+...|..+...|...|+...|+..|++.-+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34445555555555566666666666666665555555555566666665555555555544

>KOG0529|consensus

Probab=94.91  E-value=1.9  Score=37.53  Aligned_cols=134  Identities=13%  Similarity=0.022  Sum_probs=66.0

Q ss_pred             cCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC------------ChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        166 NDQP-EVALLFYRRLLQMGLYNAELFNNLALCCFYSQ------------QYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       166 ~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      .|.+ +++++.-.+.+..+|+...+|+.--.++...-            .+++-+.+...+++.+|+.  ..+|+....+
T Consensus        41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npks--Y~aW~hR~w~  118 (421)
T KOG0529|consen   41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKS--YGAWHHRKWV  118 (421)
T ss_pred             ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchh--HHHHHHHHHH
Confidence            3443 45777777778888887777765544443311            1233344444455555555  5555555555


Q ss_pred             HHhcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16588        233 AIGISD--TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG----HIERASTYLQAAAASSPYLYETHYNQAVIS  301 (341)
Q Consensus       233 ~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  301 (341)
                      +.+.+.  +..=+.+++++++.+|.+..+|...=.+.....    ...+=+++..+++..++.|..+|.+...++
T Consensus       119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL  193 (421)
T KOG0529|consen  119 LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLL  193 (421)
T ss_pred             HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence            543332  344455555555555555444443333332221    123334444445544454545554444443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.86  E-value=0.41  Score=46.86  Aligned_cols=106  Identities=10%  Similarity=-0.011  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHh----C---CHHHHHHHHHHHHHhCCCchhHHHHH
Q psy16588        228 NISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEARE----G---HIERASTYLQAAAASSPYLYETHYNQ  297 (341)
Q Consensus       228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l  297 (341)
                      ....++...+.|+.|+..|++.-...|..   .++.+..|......    |   .+++|+..|++.- -.|.-+--|...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence            34566777889999999999999988865   45777788776543    3   4667777776643 235555678888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        298 AVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       298 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      +.+|..+|+++|-+++|.-+++..|+++..-....++
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL  595 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence            9999999999999999999999999998765444433

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.75  E-value=0.25  Score=42.84  Aligned_cols=91  Identities=18%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhhcccc----------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16588        193 LALCCFYSQQYDMVVTCFERALSLALNE----------------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH  256 (341)
Q Consensus       193 la~~~~~~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  256 (341)
                      =|..++++++|..|.--|+.++++..+-                ....+-..+..||..+++.+-|+....+.+.++|..
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence            3566778888888888888888883211                011233457778888888888888888888888887


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      ..-+...+.++..+.+|.+|...+--+
T Consensus       262 frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777788887778887776655444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.75  E-value=0.36  Score=39.61  Aligned_cols=73  Identities=12%  Similarity=0.062  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY  295 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  295 (341)
                      .....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+-.
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            4455666677888999999999999999999999999999999999999999999999999999998876543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.62  E-value=0.59  Score=36.56  Aligned_cols=74  Identities=18%  Similarity=0.124  Sum_probs=51.5

Q ss_pred             ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhCCHHHHH
Q psy16588        202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS----HGLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       202 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      .-++|...|-++-.. |.-..++..+.+|..|. ..+.++++..+.+++++...    +++++..|+.++..+|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            345666666554322 22233778888887776 46788888888888887533    4788888888888888888774

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.58  E-value=0.88  Score=40.92  Aligned_cols=101  Identities=13%  Similarity=0.088  Sum_probs=64.4

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHH
Q psy16588        164 FYNDQPEVALLFYRRLLQMGLYN-AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA  242 (341)
Q Consensus       164 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A  242 (341)
                      ...++++++.+..... ++-|.- ......++..+..+|.++.|+.+.+        +  +...+.|+   .+.|+.+.|
T Consensus       272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D--~~~rFeLA---l~lg~L~~A  337 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------D--PDHRFELA---LQLGNLDIA  337 (443)
T ss_dssp             HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-----------HHHHHHHH---HHCT-HHHH
T ss_pred             HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------C--hHHHhHHH---HhcCCHHHH
Confidence            3458888877776422 122222 3446677778888888887775532        2  45555554   477999888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      .+..++     .++...|..||.....+|+++-|.++|+++
T Consensus       338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            776543     346889999999999999999999999986

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1464|consensus

Probab=94.56  E-value=1.6  Score=35.84  Aligned_cols=157  Identities=13%  Similarity=0.169  Sum_probs=97.0

Q ss_pred             cCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chH-HHHHHHHHHHHhcC
Q psy16588        166 NDQPEVALLFYRRLLQMGLYNA----ELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAA-DVWYNISHVAIGIS  237 (341)
Q Consensus       166 ~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~-~~~~~la~~~~~~g  237 (341)
                      ..+.++|+..|++++++.+.-.    .++..+..+++.+++|++-.+.|++.+..-..-   ... ...+.+-..-....
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            3578999999999999987654    356677889999999999999999887652111   001 11111111111223


Q ss_pred             CHHHHHHHHHHHHhc--CCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------------chhHHHHHHH
Q psy16588        238 DTRLAIQCLHLALSI--DSSHGL----SQNNLAVLEAREGHIERASTYLQAAAASSPY------------LYETHYNQAV  299 (341)
Q Consensus       238 ~~~~A~~~~~~al~~--~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~  299 (341)
                      +.+--.++|+..+..  +..+..    ....+|.+|+..|+|.+-.+.+++.-.....            -.+++..-..
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            333333344433321  112222    3346899999999888877777665443211            1124445566


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        300 ISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       300 ~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      .|..+.+..+-...|++++.+..
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKS  222 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKS  222 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhc
Confidence            78888888888889999987643

>KOG1538|consensus

Probab=94.45  E-value=0.9  Score=41.86  Aligned_cols=50  Identities=10%  Similarity=0.011  Sum_probs=25.9

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                      .++...+++.+|...-++.-+.-   .++++..|..+.+..+++||.+.|.++
T Consensus       781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            34445566666655544422221   235555666666666666665555544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.34  E-value=0.79  Score=35.88  Aligned_cols=75  Identities=19%  Similarity=0.155  Sum_probs=46.1

Q ss_pred             ChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHH
Q psy16588        168 QPEVALLFYRRLLQM-GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAI  243 (341)
Q Consensus       168 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~  243 (341)
                      .-+.|...|-++-.. .-++++..+.||..|. ..+.++++..+.+++++....  ..++++..|+.++..+|+++.|.
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            334555555544322 1245666666776655 466777777777777765433  34677777777777777777764

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.21  E-value=0.42  Score=30.97  Aligned_cols=18  Identities=28%  Similarity=0.145  Sum_probs=7.3

Q ss_pred             cCCHHHHHHHHHHHHhcC
Q psy16588        236 ISDTRLAIQCLHLALSID  253 (341)
Q Consensus       236 ~g~~~~A~~~~~~al~~~  253 (341)
                      .++.++|+..++++++..
T Consensus        19 ~~~~~~Al~~W~~aL~k~   36 (80)
T PF10579_consen   19 QNETQQALQKWRKALEKI   36 (80)
T ss_pred             cchHHHHHHHHHHHHhhc
Confidence            333444444444444433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.21  E-value=0.21  Score=27.06  Aligned_cols=20  Identities=20%  Similarity=0.189  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHH
Q psy16588        294 HYNQAVISNLAGDLQESYNI  313 (341)
Q Consensus       294 ~~~l~~~~~~~g~~~~A~~~  313 (341)
                      ++.+|..+..+|++++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            44445555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.19  E-value=0.24  Score=41.51  Aligned_cols=62  Identities=15%  Similarity=0.161  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      |+.+|.+|+.+.|..  ...++.+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~--G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSN--GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTB--SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCC--CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            455666666666666  66666666666666666666666666665443335555555555544

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0890|consensus

Probab=94.06  E-value=2  Score=45.66  Aligned_cols=137  Identities=13%  Similarity=0.104  Sum_probs=101.3

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CC-------
Q psy16588        184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SS-------  255 (341)
Q Consensus       184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~-------  255 (341)
                      ....++|...|.+....|+++.|...+-.+.+..  .  +.+....|..+...|+-..|+..+++.++.+ |+       
T Consensus      1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred             chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence            3457889999999999999999999999888775  3  7899999999999999999999999999664 22       


Q ss_pred             ---C------HHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCchhHHHHHHHHHHH------------cCCHHH---
Q psy16588        256 ---H------GLSQNNLAVLEAREGHI--ERASTYLQAAAASSPYLYETHYNQAVISNL------------AGDLQE---  309 (341)
Q Consensus       256 ---~------~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------~g~~~~---  309 (341)
                         .      ..+...++......+++  ++-+++|+.+.++.|...+.++.+|..|.+            .|++..   
T Consensus      1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~ 1822 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK 1822 (2382)
T ss_pred             cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH
Confidence               1      12333444444455543  457789999999999888888888865543            345544   


Q ss_pred             HHHHHHHHHhcCCCC
Q psy16588        310 SYNIVKKSLDLHPGH  324 (341)
Q Consensus       310 A~~~~~~al~~~p~~  324 (341)
                      ++..|.+++.....+
T Consensus      1823 ~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1823 AIYFFGRALYYGNQH 1837 (2382)
T ss_pred             HHHHHHHHHHhcchh
Confidence            555556666554443

>KOG4014|consensus

Probab=94.03  E-value=2.2  Score=32.90  Aligned_cols=169  Identities=12%  Similarity=0.108  Sum_probs=106.8

Q ss_pred             HcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-----
Q psy16588        131 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-----NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS-----  200 (341)
Q Consensus       131 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----  200 (341)
                      -+.+|++|..+|+.--..+. .+...+.+|..+..     .+++..|++.|..+-.  .+.+.+..++|.++..-     
T Consensus        47 i~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~  123 (248)
T KOG4014|consen   47 IQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRK  123 (248)
T ss_pred             HHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCcc
Confidence            35567777777766544332 55666667765552     3578899999988765  56777888888877652     


Q ss_pred             C--ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHH
Q psy16588        201 Q--QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       201 ~--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      +  +..+|.+++.++-.+.  +  ..+.++|...|+.-.  ++       +....|.  .+..   .+..+....+.+.|
T Consensus       124 ~dpd~~Ka~~y~traCdl~--~--~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~~---~~~~~~~~kDMdka  187 (248)
T KOG4014|consen  124 ADPDSEKAERYMTRACDLE--D--GEACFLLSTMYMGGK--EK-------FKTNAPGEGKPLD---RAELGSLSKDMDKA  187 (248)
T ss_pred             CCCCcHHHHHHHHHhccCC--C--chHHHHHHHHHhccc--hh-------hcccCCCCCCCcc---hhhhhhhhHhHHHH
Confidence            2  3678999999998774  3  567777776665432  11       1212231  1111   13344455778888


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q psy16588        277 STYLQAAAASSPYLYETHYNQAVISNLA----GDLQESYNIVKKSLDL  320 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~  320 (341)
                      .++--++.++.  ++.+..++...|..-    .+-++|..+-.++.++
T Consensus       188 ~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  188 LQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             HHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            88888887764  455666666666542    3567777777777765

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.96  E-value=0.1  Score=25.84  Aligned_cols=13  Identities=23%  Similarity=0.161  Sum_probs=4.7

Q ss_pred             HHHHHHhCCHHHH
Q psy16588        264 AVLEAREGHIERA  276 (341)
Q Consensus       264 ~~~~~~~g~~~~A  276 (341)
                      |.++...|++++|
T Consensus         8 a~~~~~~G~~~eA   20 (26)
T PF07721_consen    8 ARALLAQGDPDEA   20 (26)
T ss_pred             HHHHHHcCCHHHH
Confidence            3333333333333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.92  E-value=0.85  Score=29.59  Aligned_cols=59  Identities=8%  Similarity=-0.038  Sum_probs=45.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        262 NLAVLEAREGHIERASTYLQAAAASSPYLYE---THYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      .-|.-++...+.++|+..++++++..++...   ++-.+..+|...|+|.+++.+--+=+++
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566888999999999999998877665   4455667789999999998876555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.87  E-value=0.32  Score=26.32  Aligned_cols=21  Identities=19%  Similarity=0.151  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .+..+|..+...|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344455555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.83  E-value=0.35  Score=41.96  Aligned_cols=88  Identities=10%  Similarity=-0.029  Sum_probs=57.1

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH
Q psy16588        126 AKIFEGLNNMPMSVKYYKLILKRDATC------------------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA  187 (341)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  187 (341)
                      +..++++++|..|.--|..+++...+-                  ..+-..+..||..+++.+-|+....+.+.++|...
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            456677777777777777777765320                  01123566677777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERA  213 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~a  213 (341)
                      .-+..-|.++..+.+|.+|...+--+
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76767777777777776666544433

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.65  E-value=0.36  Score=40.46  Aligned_cols=62  Identities=23%  Similarity=0.139  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16588        242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  303 (341)
Q Consensus       242 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  303 (341)
                      |+.+|.+|+.+.|.+...++.+|.++...|+.=+|+-+|-+++-.....+.+..+|...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997665567788999988887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=93.58  E-value=4.1  Score=34.62  Aligned_cols=133  Identities=14%  Similarity=0.018  Sum_probs=90.3

Q ss_pred             ChhHHHHHHHHHHhhc-cccchHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16588        202 QYDMVVTCFERALSLA-LNENAADVWYNISHVAI-----GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER  275 (341)
Q Consensus       202 ~~~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  275 (341)
                      -.+++...+.+++... |..  ....-.++-++.     ..-+|..-..+|.-.....|+ +.+-.|.+.+..+..-.+.
T Consensus       271 lI~eg~all~rA~~~~~pGP--YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~a  347 (415)
T COG4941         271 LIDEGLALLDRALASRRPGP--YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAA  347 (415)
T ss_pred             HHHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHh
Confidence            3567777777776653 333  333333444432     234666666667666666654 5555666777766666777


Q ss_pred             HHHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        276 ASTYLQAAAAS--SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       276 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      ++...+.....  -..+...+...|..+.+.|+.++|...|++++.+.++..+..+...++...
T Consensus       348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~~l  411 (415)
T COG4941         348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLDRL  411 (415)
T ss_pred             HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            77777766654  223445677889999999999999999999999999998888777766543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.52  E-value=0.14  Score=25.32  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=21.4

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHH
Q psy16588        292 ETHYNQAVISNLAGDLQESYNIVK  315 (341)
Q Consensus       292 ~~~~~l~~~~~~~g~~~~A~~~~~  315 (341)
                      .+...+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.50  E-value=0.21  Score=27.42  Aligned_cols=27  Identities=15%  Similarity=0.112  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      ++..||.+-...++|++|+.-|+++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344455555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.13  E-value=0.51  Score=39.00  Aligned_cols=60  Identities=13%  Similarity=0.016  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                      .+...+..|...|.+.+|+++.++++.++|-+...+..+..++...|+--.+++.|++.-
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            334456777888888899999999988888888888888888888888777777776653

>KOG0686|consensus

Probab=92.92  E-value=1.1  Score=38.94  Aligned_cols=97  Identities=14%  Similarity=0.156  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSID--------SSHGL  258 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~  258 (341)
                      .++..+|..|...|+++.|+.+|-++-...... .....|.++..+-...|+|..-..+-.++...-        .-.+.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            467789999999999999999999977665444 346788888899999999998888887776541        01134


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAA  284 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al  284 (341)
                      +.+.-|.+...+++|+.|..+|-.+.
T Consensus       231 l~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  231 LKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            56667777888889999999886654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.92  E-value=2.8  Score=30.87  Aligned_cols=33  Identities=12%  Similarity=-0.068  Sum_probs=14.6

Q ss_pred             cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16588        132 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHF  164 (341)
Q Consensus       132 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  164 (341)
                      .+.....+.+++.++..++.+...+..+..+|.
T Consensus        20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~   52 (140)
T smart00299       20 RNLLEELIPYLESALKLNSENPALQTKLIELYA   52 (140)
T ss_pred             CCcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence            344444444444444444434444444444443

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.88  E-value=3.3  Score=34.16  Aligned_cols=51  Identities=12%  Similarity=0.019  Sum_probs=21.8

Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        208 TCFERALSLALNENAADVWYNISHVAIGI--SDTRLAIQCLHLALSIDSSHGLSQ  260 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~  260 (341)
                      +.+..+++.+|++  ...|...-.++...  .++..-+...++.+..++.+...|
T Consensus        95 d~~~~~lk~~PK~--YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W  147 (328)
T COG5536          95 DFLDEALKDNPKN--YQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVW  147 (328)
T ss_pred             HHHHHHHhcCCch--hhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccccee
Confidence            3344444444444  44444333333222  334444444445555555444443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.76  E-value=0.22  Score=27.29  Aligned_cols=28  Identities=14%  Similarity=0.440  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSL  216 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~  216 (341)
                      ++..||.+-...++|++|+.-|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.74  E-value=2.9  Score=34.81  Aligned_cols=61  Identities=18%  Similarity=0.101  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA  284 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  284 (341)
                      ..+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.+++.|++.-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            4455667788899999999999999999999999999999999999999888888887754

>KOG0546|consensus

Probab=92.71  E-value=0.21  Score=42.28  Aligned_cols=127  Identities=15%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16588        192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG  271 (341)
Q Consensus       192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  271 (341)
                      ..+...+..++++.|..-|.+++..-...              ...+..+...   +.-.+...-.....+++.+-...+
T Consensus       227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~--------------s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~  289 (372)
T KOG0546|consen  227 NIGNKEFKKQRYREALAKYRKALRYLSEQ--------------SRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVK  289 (372)
T ss_pred             ccchhhhhhccHhHHHHHHHHHhhhhccc--------------cccccccccc---ccccccccccccccchHHhccccc
Confidence            45666778888888888888876642100              0000000000   000011111223334555555566


Q ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      .+..|+..-..++..++....+++..+..+....++++|++.++.+....|++......+....
T Consensus       290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~  353 (372)
T KOG0546|consen  290 GRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR  353 (372)
T ss_pred             CCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence            6666666555555555555556666666666666666666666666666666655544444433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.63  E-value=0.89  Score=40.01  Aligned_cols=27  Identities=4%  Similarity=-0.184  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAA  284 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al  284 (341)
                      .+++.+|.+|..+++|.+|+..|...+
T Consensus       165 s~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  165 STYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555544

>KOG2114|consensus

Probab=92.56  E-value=2.4  Score=40.40  Aligned_cols=19  Identities=11%  Similarity=0.050  Sum_probs=10.0

Q ss_pred             HHHHHHHHhcCCHHHHHHH
Q psy16588        227 YNISHVAIGISDTRLAIQC  245 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~  245 (341)
                      ..|-.+|.++++.++-.++
T Consensus       435 tlLLncYiKlkd~~kL~ef  453 (933)
T KOG2114|consen  435 TLLLNCYIKLKDVEKLTEF  453 (933)
T ss_pred             HHHHHHHHHhcchHHHHHH
Confidence            3445566666665544333

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=92.56  E-value=5.3  Score=33.17  Aligned_cols=143  Identities=8%  Similarity=-0.036  Sum_probs=66.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcCChh-HHHHHHHHHHhhcc----ccchHHHHH
Q psy16588        158 CIGVNHFYNDQPEVALLFYRRLLQM-----GLYNAELFNNLALCCFYSQQYD-MVVTCFERALSLAL----NENAADVWY  227 (341)
Q Consensus       158 ~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~~----~~~~~~~~~  227 (341)
                      .-+..+.+.|++..|.++..-.++.     .+.+.....++..++.....-+ +-..+.+++++-..    ....+..+.
T Consensus        15 ~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~   94 (260)
T PF04190_consen   15 SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHH   94 (260)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHH
T ss_pred             HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHH
Confidence            3356677777777666555444332     2333444455555555543322 34445555555441    003356666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH-HHHHHc
Q psy16588        228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN--LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA-VISNLA  304 (341)
Q Consensus       228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~  304 (341)
                      .+|..+.+.|++.+|..+|-..     +++.....  +-.               .....-.|...+.+...+ .-|...
T Consensus        95 ~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~---------------~~~~~~~~~e~dlfi~RaVL~yL~l  154 (260)
T PF04190_consen   95 LLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLE---------------EWSTKGYPSEADLFIARAVLQYLCL  154 (260)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHH---------------HHHHHTSS--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHH---------------HHHHhcCCcchhHHHHHHHHHHHHh
Confidence            6777777666666665554322     11111110  111               111122344444443333 346777


Q ss_pred             CCHHHHHHHHHHHHhc
Q psy16588        305 GDLQESYNIVKKSLDL  320 (341)
Q Consensus       305 g~~~~A~~~~~~al~~  320 (341)
                      ++...|...+....+.
T Consensus       155 ~n~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  155 GNLRDANELFDTFTSK  170 (260)
T ss_dssp             TBHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            8888888877766655

; PDB: 3LKU_E 2WPV_G.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=92.17  E-value=5.6  Score=32.49  Aligned_cols=42  Identities=21%  Similarity=0.231  Sum_probs=26.3

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNH  163 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~  163 (341)
                      .+.++.+..+.|+|++.+.++++++..++. +.+-...++.+|
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay   46 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY   46 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence            345567777778888888888888777654 233444455544

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=91.95  E-value=4.5  Score=35.71  Aligned_cols=63  Identities=16%  Similarity=0.122  Sum_probs=47.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHhcCChHHHHHHHHHHHHc
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCME--AIACI--GVNHFYNDQPEVALLFYRRLLQM  182 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~al~~  182 (341)
                      .-....+..++..++|..|...+..+...-|....  .+..+  |..++..-++++|.+.++..+..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            34555677888999999999999999986343333  33333  45556788999999999998765

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.87  E-value=2.5  Score=34.84  Aligned_cols=60  Identities=18%  Similarity=0.117  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                      .+...+|..|+..|++++|+.+|+.+.......      ..+...+..|+...|+.+..+...-+.
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            344566777777777777777777765443211      235556777777777777666655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.80  E-value=0.66  Score=26.43  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=15.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        295 YNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       295 ~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      +.++.+|..+|+.+.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566666666666666666666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=91.65  E-value=7.8  Score=33.05  Aligned_cols=159  Identities=14%  Similarity=0.045  Sum_probs=109.7

Q ss_pred             chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------------------------ChHHHHHHHHHHHHcCC-CcH
Q psy16588        135 MPMSVKYYKLILKRDATCMEAIACIGVNHFYND--------------------------QPEVALLFYRRLLQMGL-YNA  187 (341)
Q Consensus       135 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--------------------------~~~~A~~~~~~al~~~p-~~~  187 (341)
                      -++|+.+-.-...+.|..++++-.++...++..                          -.+++...+.+++.... .-.
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY  291 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY  291 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence            467788777788889999998888777766531                          15677788888876543 333


Q ss_pred             HHHHHHHHHHHH-----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHH
Q psy16588        188 ELFNNLALCCFY-----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI--DSSHGLSQ  260 (341)
Q Consensus       188 ~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~  260 (341)
                      ...-.++-++..     .-+|..-..+|.-...+.|+.   .+-.|.+....+..-...++...+.....  -......+
T Consensus       292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP---vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h  368 (415)
T COG4941         292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP---VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH  368 (415)
T ss_pred             HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC---eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence            333334444433     346777777788777777775   45556666666655667777776665554  23344566


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHH
Q psy16588        261 NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN  296 (341)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  296 (341)
                      ...|..+.++|+.++|...|++++.+.++..+..+.
T Consensus       369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l  404 (415)
T COG4941         369 AARADLLARLGRVEEARAAYDRAIALARNAAERAFL  404 (415)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence            778999999999999999999999998877664443

>KOG0546|consensus

Probab=91.53  E-value=0.37  Score=40.84  Aligned_cols=130  Identities=15%  Similarity=0.028  Sum_probs=90.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc
Q psy16588        157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGI  236 (341)
Q Consensus       157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~  236 (341)
                      -..+.-.++.++++.|..-|.+++.....            ....+..+...   +...+...  ......+++.+-...
T Consensus       226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~------------~s~~~~~e~~~---~~~~~~~~--r~~~~~n~~~~~lk~  288 (372)
T KOG0546|consen  226 KNIGNKEFKKQRYREALAKYRKALRYLSE------------QSRDREKEQEN---RIPPLREL--RFSIRRNLAAVGLKV  288 (372)
T ss_pred             hccchhhhhhccHhHHHHHHHHHhhhhcc------------ccccccccccc---cccccccc--ccccccchHHhcccc
Confidence            34677788999999999999988764221            00011111111   11111222  255666788888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16588        237 SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  303 (341)
Q Consensus       237 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  303 (341)
                      +.+..|+.....+++.++....+++..+..+....++++|++.++.+....|++..+...+..+-..
T Consensus       289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            8888888888888888888888899999999999999999999999998888887765555444333

>PRK11619 lytic murein transglycosylase; Provisional

Probab=91.51  E-value=13  Score=35.43  Aligned_cols=56  Identities=18%  Similarity=0.144  Sum_probs=41.5

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ..+....++++.+...+...-..........+.+|..+...|+.++|..+|+++..
T Consensus       319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            33445778888777777665433344556788899998889999999999999743

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.42  E-value=0.36  Score=27.48  Aligned_cols=26  Identities=12%  Similarity=0.370  Sum_probs=18.1

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHH
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILK  147 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~  147 (341)
                      .++++..|...|+.+.|...+++++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            35667777777777777777777764

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1463|consensus

Probab=91.35  E-value=8.4  Score=32.89  Aligned_cols=164  Identities=11%  Similarity=-0.027  Sum_probs=100.3

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCcH--HHHH
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRD------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-----GLYNA--ELFN  191 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~--~~~~  191 (341)
                      +...|+..++|.+|+......+..-      +.-.+++..=...|+...+..+|...+..+-..     .|...  ..-.
T Consensus       134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL  213 (411)
T KOG1463|consen  134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL  213 (411)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence            4477888888888888777765431      112345555666777777777777766655432     12211  1222


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHH--HHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        192 NLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLA--IQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      .-|..+....+|.-|..+|-++++-...-    .....+..+-.|-...+..++-  +-.-+.+++....+..+....+.
T Consensus       214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAe  293 (411)
T KOG1463|consen  214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAE  293 (411)
T ss_pred             hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHH
Confidence            33555666678888888888887753221    1123344444455555666553  33445566666777778887777


Q ss_pred             HHHH--hCCHHHHHHHHHHHHHhCC
Q psy16588        266 LEAR--EGHIERASTYLQAAAASSP  288 (341)
Q Consensus       266 ~~~~--~g~~~~A~~~~~~al~~~p  288 (341)
                      ++.+  +.+|+.|+..|+.-+..+|
T Consensus       294 A~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  294 AFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             HhcCCcHHHHHHHHHHhHHHHhcCh
Confidence            7744  4578888888887776655

>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.17  E-value=8.8  Score=32.78  Aligned_cols=42  Identities=14%  Similarity=0.089  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHH
Q psy16588        138 SVKYYKLILKRDATCMEAIA---CIGVNHFYNDQPEVALLFYRRL  179 (341)
Q Consensus       138 A~~~~~~~l~~~~~~~~~~~---~la~~~~~~~~~~~A~~~~~~a  179 (341)
                      +...|++..+.-|+.....+   ..|.+++..++|.++...|..+
T Consensus        40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAa   84 (449)
T COG3014          40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAA   84 (449)
T ss_pred             chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHH
Confidence            45667777777766544432   5688888888888887777654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.05  E-value=6.8  Score=31.27  Aligned_cols=61  Identities=10%  Similarity=-0.008  Sum_probs=48.7

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH  256 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  256 (341)
                      ..-+.+.+..++++...+.-++-+|.+  ......+-.++.-.|+|++|...++-+-.+.|+.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtd--a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTD--AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCcc--ccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            345567788888888888888888888  7777777788888888888888888888887765

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=90.83  E-value=9.6  Score=33.71  Aligned_cols=60  Identities=12%  Similarity=0.019  Sum_probs=44.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCcH--HHHHHHH--HHHHHcCChhHHHHHHHHHHhh
Q psy16588        157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNA--ELFNNLA--LCCFYSQQYDMVVTCFERALSL  216 (341)
Q Consensus       157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la--~~~~~~~~~~~A~~~~~~al~~  216 (341)
                      ...+...+..++|..|...+......-|...  ..+..+.  ..++..-++.+|.+.++..+..
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4566677789999999999999988533333  3444444  4455678899999999998765

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.67  E-value=0.91  Score=23.26  Aligned_cols=28  Identities=18%  Similarity=0.374  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        306 DLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       306 ~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      +.+.+...|++++...|.+...|.....
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            3444555555555555555555444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1463|consensus

Probab=90.54  E-value=10  Score=32.43  Aligned_cols=165  Identities=11%  Similarity=-0.040  Sum_probs=106.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHH----cC--CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc-----cccchHHHH
Q psy16588        158 CIGVNHFYNDQPEVALLFYRRLLQ----MG--LYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNENAADVW  226 (341)
Q Consensus       158 ~la~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~  226 (341)
                      .+...|...++|.+|+......++    ++  +.-.+++..-...|+...+..+|...+..+-...     |.......=
T Consensus       133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD  212 (411)
T KOG1463|consen  133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD  212 (411)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence            577788888999999888766654    22  2234566667778888888888888777664431     111112222


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCHHH---HHHHHHHHHHhCCHHHHHHH--HHHHHHhCCCchhHHHHHH
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLALSIDS---SHGLS---QNNLAVLEAREGHIERASTY--LQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~---~~~l~~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~l~  298 (341)
                      ..=|..+....+|.-|..+|-++++-..   ++..+   +..+-.+-...+..++.-..  -+.+++....+.++....+
T Consensus       213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA  292 (411)
T KOG1463|consen  213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA  292 (411)
T ss_pred             HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence            3335566666899999999999987542   22333   33334444556666664443  3556666667777888888


Q ss_pred             HHHHHc--CCHHHHHHHHHHHHhcCC
Q psy16588        299 VISNLA--GDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       299 ~~~~~~--g~~~~A~~~~~~al~~~p  322 (341)
                      .++.+.  .+|+.|+..|++-+..+|
T Consensus       293 eA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  293 EAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             HHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence            887653  578888888887776665

>PF13041 PPR_2: PPR repeat family

Probab=90.48  E-value=1.7  Score=25.27  Aligned_cols=28  Identities=4%  Similarity=-0.102  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                      ..|..+-..+.+.|++++|.+.|++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            3444444444555555555555555444

>PF12854 PPR_1: PPR repeat

Probab=90.45  E-value=0.9  Score=24.12  Aligned_cols=27  Identities=15%  Similarity=0.046  Sum_probs=18.1

Q ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        290 LYETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      +...|..+...|.+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            344666677777777777777776664

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.41  E-value=9.4  Score=31.83  Aligned_cols=57  Identities=12%  Similarity=0.110  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHh----C--CCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        261 NNLAVLEAREGHIERASTYLQAAAAS----S--PYLYETHYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                      +.+...+++.|+|.+|+......+.-    +  +.-..++..-..+|....+..++...+..+
T Consensus       129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA  191 (421)
T COG5159         129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA  191 (421)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence            34555666666666666665554421    1  223345555556666666655555554443

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=90.35  E-value=13  Score=33.35  Aligned_cols=31  Identities=19%  Similarity=0.181  Sum_probs=25.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDA  150 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~  150 (341)
                      .....+|..++..++|+-|...|+.+.+...
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~  239 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFK  239 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence            3344588999999999999999999877554

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.27  E-value=1.1  Score=22.97  Aligned_cols=27  Identities=30%  Similarity=0.239  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16588        272 HIERASTYLQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       272 ~~~~A~~~~~~al~~~p~~~~~~~~l~  298 (341)
                      +.+.+...|++++...|.+...|..++
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            344555555555555555555554443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF13041 PPR_2: PPR repeat family

Probab=90.21  E-value=1.9  Score=25.08  Aligned_cols=29  Identities=17%  Similarity=0.216  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                      ..|..+-..+.+.|++++|.+.|++..+.
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            34555556666666666666666666543

>KOG4014|consensus

Probab=90.18  E-value=7.2  Score=30.15  Aligned_cols=155  Identities=11%  Similarity=0.095  Sum_probs=96.7

Q ss_pred             CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----cCChhHHHHHHHHHHhhccccchH
Q psy16588        150 ATCMEAIACIGVNHF-YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY-----SQQYDMVVTCFERALSLALNENAA  223 (341)
Q Consensus       150 ~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~  223 (341)
                      ...++..+.||..+. -+.+|++|.+.|+.--..+. .+...+.+|..++.     .+++..|+..|..+-..  +.  +
T Consensus        31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~--~  105 (248)
T KOG4014|consen   31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NI--P  105 (248)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CC--H
Confidence            346777788887665 35688889888887554332 34556666665543     45788999999998774  44  7


Q ss_pred             HHHHHHHHHHHhc-----C--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHH
Q psy16588        224 DVWYNISHVAIGI-----S--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN  296 (341)
Q Consensus       224 ~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  296 (341)
                      .+..++|.++..-     +  +..+|++++.++..+.  +..+.++|...|+.-.  ++       +....|..... ..
T Consensus       106 ~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p-~~  173 (248)
T KOG4014|consen  106 QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKP-LD  173 (248)
T ss_pred             HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCC-cc
Confidence            7888888877542     2  3678999999987664  4566677766664432  22       12223311110 01


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        297 QAVISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       297 l~~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                      .+..+.-..+.+.|.++-.++.++.
T Consensus       174 ~~~~~~~~kDMdka~qfa~kACel~  198 (248)
T KOG4014|consen  174 RAELGSLSKDMDKALQFAIKACELD  198 (248)
T ss_pred             hhhhhhhhHhHHHHHHHHHHHHhcC
Confidence            2233334567777777777776663

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.08  E-value=4.4  Score=33.39  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=10.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLA  249 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~a  249 (341)
                      ..+|..|+..|++++|+++|+.+
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~  204 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPA  204 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHH
Confidence            34444444444444444444444

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.61  E-value=16  Score=33.24  Aligned_cols=167  Identities=9%  Similarity=-0.031  Sum_probs=105.8

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-C-----CcHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG-L-----YNAELFNNL  193 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p-----~~~~~~~~l  193 (341)
                      .+++.++.+|.+. ..+.-..++++.++.+-++...-..|+..|.+ ++.+++..+|.+++... |     .--++|..+
T Consensus       100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL  177 (711)
T COG1747         100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKL  177 (711)
T ss_pred             HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence            6677888888888 56777888898888888888888888888877 88899999999987542 2     112233333


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----  269 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----  269 (341)
                      -..  -..+.+.-+....+.-..........++..+-.-|....++++|+..+...++.+..+..+.-++...+..    
T Consensus       178 ~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~  255 (711)
T COG1747         178 PEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRG  255 (711)
T ss_pred             HHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhcc
Confidence            221  12334433333333322221111122333333555667889999999998888887776655555444433    


Q ss_pred             ----------------hCCHHHHHHHHHHHHHhCCCc
Q psy16588        270 ----------------EGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       270 ----------------~g~~~~A~~~~~~al~~~p~~  290 (341)
                                      -.++.+++.-|++.+..+..+
T Consensus       256 ~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn  292 (711)
T COG1747         256 HSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN  292 (711)
T ss_pred             chhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence                            456777888888877665443

>KOG1538|consensus

Probab=89.59  E-value=5.7  Score=36.94  Aligned_cols=50  Identities=12%  Similarity=-0.015  Sum_probs=29.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      ..+...++|++|....++--+.-   ..+++-.|..+.+..+|++|.+.|.++
T Consensus       781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            34445566666665555433222   345666676667777777776666554

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.44  E-value=6.3  Score=34.86  Aligned_cols=59  Identities=12%  Similarity=0.013  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh---------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        260 QNNLAVLEAREGHIERASTYLQAAAAS---------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ...+..++..+|+|..|++.++.. ++         .+-+...++.+|.+|..+++|.+|++.|...+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788889999998887653 22         223455889999999999999999999998873

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.04  E-value=5.7  Score=31.68  Aligned_cols=63  Identities=19%  Similarity=0.047  Sum_probs=51.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      ..-+.+.+...+|+...+.-++..|.+......+-..+.-.|+|++|...++-+-.+.|++..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            344567788888988888888888888888888888888889999999988888888887643

>KOG4151|consensus

Probab=88.92  E-value=2.4  Score=40.05  Aligned_cols=102  Identities=16%  Similarity=0.105  Sum_probs=70.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        192 NLALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAI--GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       192 ~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      .-++.++..+++..+.--|..++.+-|.+  .......+.+.+++  ..|+|.+++.-..-++...|....++...+..|
T Consensus        58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y  137 (748)
T KOG4151|consen   58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY  137 (748)
T ss_pred             hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence            34677777778888777777777777644  23444555665554  356777777777777777777777777777777


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYET  293 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~  293 (341)
                      ...++++-|++.+.-.....|.+..+
T Consensus       138 ~al~k~d~a~rdl~i~~~~~p~~~~~  163 (748)
T KOG4151|consen  138 EALNKLDLAVRDLRIVEKMDPSNVSA  163 (748)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchH
Confidence            77777777777766666667766543

>KOG2114|consensus

Probab=88.81  E-value=5  Score=38.37  Aligned_cols=55  Identities=15%  Similarity=0.021  Sum_probs=37.1

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFYNDQPEVALLFYRRLLQM  182 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  182 (341)
                      .++.+..-|+-|+.+.+.- ..+++ -.+.+...|..++..|++++|...|.+.+..
T Consensus       342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            4455566666666655442 11222 2455678888999999999999999988764

>PF12854 PPR_1: PPR repeat

Probab=88.79  E-value=1.5  Score=23.27  Aligned_cols=26  Identities=15%  Similarity=0.192  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQA  282 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~  282 (341)
                      ..+|..+...|.+.|+.++|.+.|++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            34455555555555555555555543

>KOG0687|consensus

Probab=88.65  E-value=13  Score=31.64  Aligned_cols=101  Identities=10%  Similarity=-0.084  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADV  225 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~  225 (341)
                      .+++..++..|.+.|+-+.|++.+.+..+..-      +-......+|..|....-..+.++..+..++...+. ..-..
T Consensus       104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl  183 (393)
T KOG0687|consen  104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL  183 (393)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence            57889999999999999999999888765421      122334566777766655556666656666554443 11233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16588        226 WYNISHVAIGISDTRLAIQCLHLALSID  253 (341)
Q Consensus       226 ~~~la~~~~~~g~~~~A~~~~~~al~~~  253 (341)
                      ....|.-.+...+|.+|-..|-..+...
T Consensus       184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  184 KVYQGLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence            3445666677789999999998887654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.60  E-value=3.1  Score=26.89  Aligned_cols=24  Identities=33%  Similarity=0.260  Sum_probs=11.2

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHH
Q psy16588        261 NNLAVLEAREGHIERASTYLQAAA  284 (341)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~al  284 (341)
                      ...+.-+-..|++.+|+.+|++++
T Consensus        10 a~~AVe~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682          10 AINAVKAEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Confidence            334444444455555555554443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=88.51  E-value=6.6  Score=34.53  Aligned_cols=45  Identities=13%  Similarity=-0.012  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16588        169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA  213 (341)
Q Consensus       169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  213 (341)
                      .-+|+-+++.++...|.+......+..+|...|-...|...|...
T Consensus       199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            456777778888888888888888888888888888888887553

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=88.14  E-value=19  Score=32.31  Aligned_cols=154  Identities=19%  Similarity=0.056  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCh-------hHHHHHHHHHHhhccc---
Q psy16588        156 IACIGVNHFYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYSQQY-------DMVVTCFERALSLALN---  219 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~~~---  219 (341)
                      ...+|..++..++|+-|...|+.+.+...++.      .+....|.+++..+..       ++...+++.++...-.   
T Consensus       211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~  290 (414)
T PF12739_consen  211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL  290 (414)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence            44799999999999999999999887543321      2333444555554422       2333344443332111   


Q ss_pred             ------cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC--C---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        220 ------ENAADVWYNISHVAIGISDTRLAIQCLHLALSI--DS--S---HGLSQNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       220 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                            ..........+.++...+.+.+|...+-++...  ..  .   .+..+-..+.++              ..+..
T Consensus       291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~~~  356 (414)
T PF12739_consen  291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASLRS  356 (414)
T ss_pred             cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccccc
Confidence                  012445666677778888887777766665544  21  1   222333344444              11111


Q ss_pred             -CC--C---chh--HH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        287 -SP--Y---LYE--TH-YNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       287 -~p--~---~~~--~~-~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                       .|  .   .-.  .| ..-|.-|.+.|+...|..+|.+++.....
T Consensus       357 ~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  357 NRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence             11  1   001  22 23456789999999999999999987654

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=87.97  E-value=8.8  Score=28.20  Aligned_cols=121  Identities=11%  Similarity=-0.048  Sum_probs=76.4

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHH
Q psy16588        162 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL  241 (341)
Q Consensus       162 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~  241 (341)
                      .+...+.....+.+++..+..++.+...+..+..+|... +..+.++.++.    ....  . -.-..+..+.+.+-+++
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~--y-d~~~~~~~c~~~~l~~~   87 (140)
T smart00299       16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNH--Y-DIEKVGKLCEKAKLYEE   87 (140)
T ss_pred             HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----cccc--C-CHHHHHHHHHHcCcHHH
Confidence            344567889999999999998888888888999888765 45566666663    1111  1 11223444456666777


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16588        242 AIQCLHLALSIDSSHGLSQNNLAVLEA-REGHIERASTYLQAAAASSPYLYETHYNQAVISNL  303 (341)
Q Consensus       242 A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  303 (341)
                      +...|.+.    .....+    -.++. ..++++.|++++.+     ..+++.|..++..+..
T Consensus        88 ~~~l~~k~----~~~~~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~  137 (140)
T smart00299       88 AVELYKKD----GNFKDA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD  137 (140)
T ss_pred             HHHHHHhh----cCHHHH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence            77766653    111111    12222 23788999998876     3467788887776653

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.55  E-value=15  Score=30.49  Aligned_cols=162  Identities=10%  Similarity=0.040  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHh----c----CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc--CChhHH
Q psy16588        137 MSVKYYKLILKRDATCMEAIACIGVNHFY----N----DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS--QQYDMV  206 (341)
Q Consensus       137 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A  206 (341)
                      .|++.-...+..+|..-.+|...-.+...    .    .-++.-+.++..+++.+|.+..+|...-.++...  .++..-
T Consensus        50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE  129 (328)
T COG5536          50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE  129 (328)
T ss_pred             HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence            46666666666677655555544333332    1    2245667788889999999999888777776654  567778


Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHH------HhcCCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHhCC-----
Q psy16588        207 VTCFERALSLALNENAADVWYNISHVA------IGISDTRLAIQCLHLALSIDSSHGLSQNNL---AVLEAREGH-----  272 (341)
Q Consensus       207 ~~~~~~al~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~~g~-----  272 (341)
                      ..+.++.+..++.+  ...|...-.+.      ..-..+..-.++-..++..++.+..+|...   -......|+     
T Consensus       130 l~itkklld~DsrN--yH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk  207 (328)
T COG5536         130 LFITKKLLDSDSRN--YHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQK  207 (328)
T ss_pred             HHHHHHHhcccccc--cceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHH
Confidence            88889999999888  66664433333      344455556777777888899888888776   222333444     


Q ss_pred             -HHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        273 -IERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       273 -~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                       +++-+++.-.++-.+|++..+|..+-.+
T Consensus       208 ~l~~eL~~i~~~if~~p~~~S~w~y~r~~  236 (328)
T COG5536         208 YLEKELEYIFDKIFTDPDNQSVWGYLRGV  236 (328)
T ss_pred             HHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence             4555666666677789888877765444

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=87.23  E-value=14  Score=29.87  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=23.5

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       303 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      ..++...|+.++++|++++|+.. +...+.++.+.+
T Consensus       190 d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~l  224 (230)
T PHA02537        190 DAETLQLALALLQRAFQLNDKCG-VKKDIERLERRL  224 (230)
T ss_pred             CcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHH
Confidence            44577889999999999987653 344445555544

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=87.16  E-value=16  Score=30.47  Aligned_cols=199  Identities=10%  Similarity=-0.003  Sum_probs=126.3

Q ss_pred             hcHHHHHHHcCCchHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCChHHHHHHHH---HHHHc--CCCcHHH
Q psy16588        123 LNLAKIFEGLNNMPMSVKYYKLILKRDAT--------CMEAIACIGVNHFYNDQPEVALLFYR---RLLQM--GLYNAEL  189 (341)
Q Consensus       123 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~---~al~~--~p~~~~~  189 (341)
                      +.++.-....+++++|+..|.+++.....        .......++.+|...|++..-.+...   .+...  .|....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            45667777889999999999999876221        23456789999999998765443333   33222  1222222


Q ss_pred             HHHHHHH-HHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCHH
Q psy16588        190 FNNLALC-CFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSI------DSSHGL  258 (341)
Q Consensus       190 ~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~  258 (341)
                      ...+-.- -.....++.-+..+...++.....    .....-..+..++++.|.|.+|+......+..      .+.-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            2222222 223455677777777777654333    22334456778889999999999987776532      244456


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCchhHH--HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASS-----PYLYETH--YNQAVISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                      ++..-..+|....+..++...+..+-...     |....+.  ..-|.....-.+|.-|..+|-++++-.
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence            77777888888888888888777765432     3222221  123445566678888999988888653

>KOG0276|consensus

Probab=86.68  E-value=20  Score=33.28  Aligned_cols=27  Identities=19%  Similarity=0.346  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERA  213 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~a  213 (341)
                      ..-|..||......+++..|.+++.++
T Consensus       666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a  692 (794)
T KOG0276|consen  666 EVKWRQLGDAALSAGELPLASECFLRA  692 (794)
T ss_pred             hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence            344445555555555555555555444

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=86.59  E-value=18  Score=30.31  Aligned_cols=102  Identities=9%  Similarity=-0.007  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HH
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADV---WYNISHVAIGISDTRLAIQCLHLALSIDSSHG---LS  259 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~  259 (341)
                      .+++.++|..|.+.++.+.+.+.+.+.+...... ...++   ...+|.+|..+.-.++.++..+..++...+..   ..
T Consensus       115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy  194 (412)
T COG5187         115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY  194 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence            4577778888888888887777777776654333 12233   33455555555555566666666665543321   12


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16588        260 QNNLAVLEAREGHIERASTYLQAAAASSP  288 (341)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p  288 (341)
                      -...|...+...+|.+|-..+...+....
T Consensus       195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         195 KVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            23345555666677777777766665443

>KOG1920|consensus

Probab=85.92  E-value=9.4  Score=38.17  Aligned_cols=24  Identities=13%  Similarity=-0.010  Sum_probs=15.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHH
Q psy16588        261 NNLAVLEAREGHIERASTYLQAAA  284 (341)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~al  284 (341)
                      ..|+.-+...+++-+|-+.....+
T Consensus      1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHHHHHHHHcccchhHHHHHHHHh
Confidence            455556666677766666666554

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=85.73  E-value=7.6  Score=34.14  Aligned_cols=44  Identities=11%  Similarity=0.064  Sum_probs=36.2

Q ss_pred             hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16588        203 YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHL  248 (341)
Q Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (341)
                      .-+|+.+++.++...|.+  ......+..+|...|-...|...|..
T Consensus       199 l~~Ai~lLE~~l~~s~~n--~~~~LlLvrlY~~LG~~~~A~~~~~~  242 (365)
T PF09797_consen  199 LLQAIALLEHALKKSPHN--YQLKLLLVRLYSLLGAGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            457777888888888888  88888888888888888888888865

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=85.72  E-value=20  Score=30.05  Aligned_cols=123  Identities=10%  Similarity=-0.084  Sum_probs=81.0

Q ss_pred             cCCchHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHH
Q psy16588        132 LNNMPMSVKYYKLILKRD-AT-----CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFY  199 (341)
Q Consensus       132 ~g~~~~A~~~~~~~l~~~-~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~  199 (341)
                      ...-++-++-+.+.++.. .+     -.+++.++|..|.+.++.+.+.++..+.++..-.      -...-..+|.+|-.
T Consensus        88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d  167 (412)
T COG5187          88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD  167 (412)
T ss_pred             HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence            334455555665554432 12     3678999999999999999999998887764321      12234566777766


Q ss_pred             cCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16588        200 SQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS  254 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  254 (341)
                      +.=..+.++..+..++...+. ..-..-...|...+...+|.+|-..+-..+....
T Consensus       168 ~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         168 RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            666677777777777765544 1122334456666777889999999888876553

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=85.57  E-value=1.7  Score=21.92  Aligned_cols=23  Identities=4%  Similarity=-0.032  Sum_probs=10.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLA  249 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~a  249 (341)
                      ..+-..|.+.|++++|.+.|++.
T Consensus         4 ~~li~~~~~~~~~~~a~~~~~~M   26 (31)
T PF01535_consen    4 NSLISGYCKMGQFEEALEVFDEM   26 (31)
T ss_pred             HHHHHHHHccchHHHHHHHHHHH
Confidence            33444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG4521|consensus

Probab=85.37  E-value=45  Score=33.78  Aligned_cols=166  Identities=11%  Similarity=0.073  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------------C-----------C--c--HHHHHHHHHHHHHcCCh
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMG--------------L-----------Y--N--AELFNNLALCCFYSQQY  203 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------p-----------~--~--~~~~~~la~~~~~~~~~  203 (341)
                      ....+.+|.+|...|+..+|+.+|.++..-.              |           .  .  ...|...-+++...+..
T Consensus       920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~  999 (1480)
T KOG4521|consen  920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA  999 (1480)
T ss_pred             HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence            3455677777777777777777777765321              1           0  0  11223334455556667


Q ss_pred             hHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHH---
Q psy16588        204 DMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIER---  275 (341)
Q Consensus       204 ~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~---  275 (341)
                      +.+.+.-.+|++.-|++  ..+.....+-+-+..+|.+-+|.+.+    -.+|+.   -..+..+-.++++.|+++.   
T Consensus      1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred             HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchHHHhh
Confidence            77777777777765544  22444555555566777777775433    334543   2355666777777776543   


Q ss_pred             ---------HHH-HHHHHHHhCCCchhHHHHHHH-HHHHcCCHHHHHH-HHHHHHhcCC
Q psy16588        276 ---------AST-YLQAAAASSPYLYETHYNQAV-ISNLAGDLQESYN-IVKKSLDLHP  322 (341)
Q Consensus       276 ---------A~~-~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~-~~~~al~~~p  322 (341)
                               -.. .++.+-...|....-++.+-. .+...+++.+|.. .|+.+..+..
T Consensus      1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred             CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence                     222 333444444443333444433 4556677776654 4566665543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=85.32  E-value=1.7  Score=21.92  Aligned_cols=25  Identities=8%  Similarity=0.016  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        294 HYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       294 ~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                      |..+...|.+.|++++|...|++..
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            3444455555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0687|consensus

Probab=84.33  E-value=25  Score=30.01  Aligned_cols=101  Identities=4%  Similarity=-0.060  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHH
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLS  259 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~  259 (341)
                      .+++.+.+..|.+.|+-+.|.+.+++..+..-..    ........+|..|....-..+-++..+..++...+.   -..
T Consensus       104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl  183 (393)
T KOG0687|consen  104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL  183 (393)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence            4566677777777777777777766665543222    112233445555554444444444444444433221   112


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        260 QNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      -...|...+...+|.+|...|-.++...
T Consensus       184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  184 KVYQGLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence            2233445555566666666666655443

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=84.28  E-value=6.2  Score=31.04  Aligned_cols=48  Identities=17%  Similarity=0.147  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        275 RASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       275 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      ..++..++.+...| ++.++.+++.++...|+.++|.....++..+.|.
T Consensus       129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  129 AYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            34445555555556 4566677777777777777777777777777773

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=83.14  E-value=21  Score=29.83  Aligned_cols=34  Identities=24%  Similarity=0.161  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16588        274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDL  307 (341)
Q Consensus       274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  307 (341)
                      +.|...+.++++++|....+...+..+-...|..
T Consensus       116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP  149 (277)
T PF13226_consen  116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGEP  149 (277)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence            4555566666666666655555555554444443

>KOG0276|consensus

Probab=82.97  E-value=13  Score=34.51  Aligned_cols=110  Identities=18%  Similarity=0.148  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      ...++..+..+|-.+       +++++.++.   .-.+.   +..+.|+++.|.....++     ++..-|..||.+...
T Consensus       617 rt~va~Fle~~g~~e-------~AL~~s~D~---d~rFe---lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~  678 (794)
T KOG0276|consen  617 RTKVAHFLESQGMKE-------QALELSTDP---DQRFE---LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS  678 (794)
T ss_pred             hhhHHhHhhhccchH-------hhhhcCCCh---hhhhh---hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh
Confidence            444555555555444       444444443   22222   334667777776655543     456678888888888


Q ss_pred             hCCHHHHHHHHHHHHHhC--------CCchhHHH------------HHH-HHHHHcCCHHHHHHHHHHH
Q psy16588        270 EGHIERASTYLQAAAASS--------PYLYETHY------------NQA-VISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~--------p~~~~~~~------------~l~-~~~~~~g~~~~A~~~~~~a  317 (341)
                      .+++..|.++|.++....        ..+.+.+.            +++ .+|...|+++++.+.+...
T Consensus       679 ~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  679 AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence            888888888888874421        12222222            222 2466678888877776654

>PRK09687 putative lyase; Provisional

Probab=82.20  E-value=29  Score=29.22  Aligned_cols=199  Identities=10%  Similarity=-0.073  Sum_probs=119.9

Q ss_pred             HhhhcHHHHHHHcCCc----hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCcHHHH
Q psy16588        120 VSRLNLAKIFEGLNNM----PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ-----PEVALLFYRRLLQMGLYNAELF  190 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~----~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~al~~~p~~~~~~  190 (341)
                      ..+...+.++.+.|+.    .++...+...+..++ +..+....+..+...+.     ...+...+..++..  .++.+.
T Consensus        69 ~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~-d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--~~~~VR  145 (280)
T PRK09687         69 IERDIGADILSQLGMAKRCQDNVFNILNNLALEDK-SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--KSTNVR  145 (280)
T ss_pred             HHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC-CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC--CCHHHH
Confidence            3344444556666653    356666666655555 34444444433333321     12334444333322  266777


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      +..+..+...++ .+++..+..++.- + +  ..+....+..+-..+ +...+...+.+++.  ..+..+...-...+.+
T Consensus       146 ~~a~~aLg~~~~-~~ai~~L~~~L~d-~-~--~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        146 FAVAFALSVIND-EAAIPLLINLLKD-P-N--GDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLAL  218 (280)
T ss_pred             HHHHHHHhccCC-HHHHHHHHHHhcC-C-C--HHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHc
Confidence            777777766665 6788888888863 2 2  334443333333332 24578888888874  3355666666666777


Q ss_pred             hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      .|+ ..|+..+-+.++...    .....+.++...|.. +|+..+.+.+..+|+..........|
T Consensus       219 ~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~  277 (280)
T PRK09687        219 RKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL  277 (280)
T ss_pred             cCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence            777 678888888876422    456677788888885 79999999999888665555554444

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=82.01  E-value=4.1  Score=20.97  Aligned_cols=26  Identities=19%  Similarity=0.150  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        294 HYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       294 ~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      |..+...|.+.|++++|...|.+..+
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45566666677777777777766554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.00  E-value=8.7  Score=28.45  Aligned_cols=51  Identities=16%  Similarity=-0.008  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDL  307 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  307 (341)
                      .+.....+......|++.-|.+....++..+|++..+....+.+|.++|.-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            455566666677777777777777777777777777777777777666543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=81.96  E-value=14  Score=26.98  Aligned_cols=51  Identities=10%  Similarity=-0.035  Sum_probs=21.4

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       235 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      .+|+-++-.+.+....+.+..++..+..+|.+|.+.|+..++-+.+.+|.+
T Consensus        98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            444444444444444443334455555555555555555555555555443

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown

Probab=81.94  E-value=0.43  Score=44.07  Aligned_cols=167  Identities=12%  Similarity=-0.052  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHH--HcCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHH-HhhccccchHHHHHHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLL--QMGLY-NAELFNNLALCCFYSQQYDMVVTCFERA-LSLALNENAADVWYNI  229 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~l  229 (341)
                      ......+..+...|++..|...+.+.-  .+.+. ........+.+....|++++|+..+... ...-|.......+...
T Consensus        25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~  104 (536)
T PF04348_consen   25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR  104 (536)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence            344556677777888888887777665  22222 2344556677777788888888877641 1111111224455566


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        230 SHVAIGISDTRLAIQCLHLALSIDSS-------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      +.++...|++-+|...+-..-.+-++       ...+|..|..+       ..  ..+.............|..|+.++.
T Consensus       105 A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l-------~~--~~L~~~~~~~~~~l~GWl~La~i~~  175 (536)
T PF04348_consen  105 AQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQL-------PP--EQLQQLRRASEPDLQGWLELALIYR  175 (536)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcC-------CH--HHHHhhhcCCCHHHHHHHHHHHHHH
Confidence            77777777777776655444333221       11222222211       11  0111111112223346777777776


Q ss_pred             Hc-CCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16588        303 LA-GDLQESYNIVKKSLDLHPGHSYSWD  329 (341)
Q Consensus       303 ~~-g~~~~A~~~~~~al~~~p~~~~~~~  329 (341)
                      .. .+...-...+..-...+|+|+....
T Consensus       176 ~~~~~p~~l~~al~~Wq~~yP~HPA~~~  203 (536)
T PF04348_consen  176 QYQQDPAQLKQALNQWQQRYPNHPAAQY  203 (536)
T ss_dssp             ----------------------------
T ss_pred             hccCCHHHHHHHHHHHHHhCcCCccccc
Confidence            63 3333333344444456676665543

; PDB: 3CKM_A.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=81.86  E-value=3.9  Score=21.04  Aligned_cols=24  Identities=8%  Similarity=-0.008  Sum_probs=11.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLAL  250 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al  250 (341)
                      ..+-..|.+.|++++|.+.|.+..
T Consensus         4 n~li~~~~~~~~~~~a~~~~~~M~   27 (35)
T TIGR00756         4 NTLIDGLCKAGRVEEALELFKEML   27 (35)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344444455555555555554443

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=81.56  E-value=51  Score=31.60  Aligned_cols=188  Identities=9%  Similarity=-0.091  Sum_probs=118.6

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  200 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  200 (341)
                      ++..-....+.+.|...+.+......-.    ..++..++.-....+...+|..++..+.... .+...+..........
T Consensus       247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~  325 (644)
T PRK11619        247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGT  325 (644)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHc
Confidence            3444445666778888887764444322    2233344444444333667777777655332 2333344444455578


Q ss_pred             CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------C-----C-C--H--
Q psy16588        201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-------------S-----S-H--G--  257 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p-----~-~--~--  257 (341)
                      ++++.+...+...-......  ....+.+|..+...|+.++|...|+++....             |     . .  .  
T Consensus       326 ~dw~~~~~~i~~L~~~~~~~--~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~  403 (644)
T PRK11619        326 GDRRGLNTWLARLPMEAKEK--DEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDS  403 (644)
T ss_pred             cCHHHHHHHHHhcCHhhccC--HhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhh
Confidence            88888777777753333333  7788899999888999999999998874310             0     0 0  0  


Q ss_pred             ----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        258 ----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       258 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                          .-....+..+...|+...|...+..++..  .+..-...++.+....|.++.++....++
T Consensus       404 ~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~  465 (644)
T PRK11619        404 ALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG  465 (644)
T ss_pred             hhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence                01233456677789999999888887764  33456677888888889888887766544

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=81.37  E-value=27  Score=29.22  Aligned_cols=127  Identities=9%  Similarity=0.053  Sum_probs=68.2

Q ss_pred             HHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH---HHhcCCHH----HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        195 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV---AIGISDTR----LAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       195 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~---~~~~g~~~----~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      ..+...++|++--..+.+...........+..+..+..   +.......    .-...++.-++..|++..++..+|..+
T Consensus         8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~   87 (277)
T PF13226_consen    8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW   87 (277)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            34556677777777777665543332001111222111   11221111    245556666666777777766666555


Q ss_pred             HHhCCHHHHHHHHHHHHHhCC------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        268 AREGHIERASTYLQAAAASSP------YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      ...            +..+..      -...-|....      .-.+.|...+.+++.++|....+...+-.+...|+
T Consensus        88 ~~~------------Aw~~RG~~~A~~V~~~~W~~~~------~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg  147 (277)
T PF13226_consen   88 VHR------------AWDIRGSGYASTVTEAQWLGAH------QACDQAVAALLKAIELSPRPVAAAIGMINISAYFG  147 (277)
T ss_pred             HHH------------HHHHHccchhcccCHHHHHHHH------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence            332            111111      0112222222      22467999999999999999998888887776654

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.15  E-value=3  Score=26.95  Aligned_cols=16  Identities=19%  Similarity=0.382  Sum_probs=10.3

Q ss_pred             cCChHHHHHHHHHHHH
Q psy16588        166 NDQPEVALLFYRRLLQ  181 (341)
Q Consensus       166 ~~~~~~A~~~~~~al~  181 (341)
                      .|++++|+.+|..+++
T Consensus        19 ~gny~eA~~lY~~ale   34 (75)
T cd02680          19 KGNAEEAIELYTEAVE   34 (75)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            4666666666666655

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>TIGR02710 CRISPR-associated protein, TIGR02710 family

Probab=80.47  E-value=40  Score=29.70  Aligned_cols=21  Identities=14%  Similarity=0.082  Sum_probs=10.2

Q ss_pred             HHHHcCChhHHHHHHHHHHhh
Q psy16588        196 CCFYSQQYDMVVTCFERALSL  216 (341)
Q Consensus       196 ~~~~~~~~~~A~~~~~~al~~  216 (341)
                      .++..++|..|...|.+++..
T Consensus       139 ~l~n~~dy~aA~~~~~~L~~r  159 (380)
T TIGR02710       139 RAINAFDYLFAHARLETLLRR  159 (380)
T ss_pred             HHHHhcChHHHHHHHHHHHhc
Confidence            344445555555555554444

Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=80.39  E-value=11  Score=26.97  Aligned_cols=26  Identities=23%  Similarity=0.158  Sum_probs=15.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      ..+|...++.+++-.++-.|++|+.+
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~   30 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSL   30 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence            44555556666666666666666543

>KOG3783|consensus

Probab=80.30  E-value=48  Score=30.44  Aligned_cols=179  Identities=11%  Similarity=-0.043  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCChhHHHHHHH
Q psy16588        136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFE  211 (341)
Q Consensus       136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~  211 (341)
                      +...+.+.......|.++.-....+..+...|+.+.|+..++..+.  +..    .-.++.+|.++..+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3445555555667888888888888888888888889999988877  322    3357788999999999999999999


Q ss_pred             HHHhhccccchHHHHHHHH-HHHHh--------cCCHHHHHHHHHHHH---hcCCCC-----------------------
Q psy16588        212 RALSLALNENAADVWYNIS-HVAIG--------ISDTRLAIQCLHLAL---SIDSSH-----------------------  256 (341)
Q Consensus       212 ~al~~~~~~~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al---~~~p~~-----------------------  256 (341)
                      ...+.+...  .-.|..++ .|++.        .|+-++|..+++...   +..|.+                       
T Consensus       328 ~L~desdWS--~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~  405 (546)
T KOG3783|consen  328 LLRDESDWS--HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS  405 (546)
T ss_pred             HHHhhhhhh--HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence            998887665  44444444 34322        234444444433322   221111                       


Q ss_pred             -HH--HHHHHHHHHHH--hCCHHHHHHHHHHHHH---h-CCCch-hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        257 -GL--SQNNLAVLEAR--EGHIERASTYLQAAAA---S-SPYLY-ETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       257 -~~--~~~~l~~~~~~--~g~~~~A~~~~~~al~---~-~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                       ..  -++.++.++..  ....++.. -++..++   . ++++. --++.+|.++..+|+...|..+|..+++
T Consensus       406 ~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~  477 (546)
T KOG3783|consen  406 ILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVE  477 (546)
T ss_pred             ccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             00  11222222211  11222222 1111121   1 11111 1456789999999999999999998884

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=80.27  E-value=8.7  Score=28.46  Aligned_cols=51  Identities=18%  Similarity=0.081  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI  273 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  273 (341)
                      .+.....+...+..|++.-|.++.+.++..+|++..+...++.++..+|.-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            556677777778888888888888888888888888887777777665543

>KOG2063|consensus

Probab=80.13  E-value=65  Score=31.91  Aligned_cols=163  Identities=11%  Similarity=0.043  Sum_probs=88.0

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCcHH-------
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQP--EVALLFYRRLLQMGLYNAE-------  188 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~-------  188 (341)
                      +..|...|...|+.++|++.+.+.....    +...+.+-..-..+...+..  +-..++-.=.+..+|....       
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~  586 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED  586 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence            3456688888899999999888887733    22223333333333333333  3334443333333332211       


Q ss_pred             ------HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh--------cCCHHHHHHH--HHHHHhc
Q psy16588        189 ------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG--------ISDTRLAIQC--LHLALSI  252 (341)
Q Consensus       189 ------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~--~~~al~~  252 (341)
                            .-.....-|......+-++.+++.++...... ....+..++..|..        .++-+++.+.  .++....
T Consensus       587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~-~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~  665 (877)
T KOG2063|consen  587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT-STLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF  665 (877)
T ss_pred             hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc-chHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence                  00112233456677888888888888776543 13333444444422        1222344444  2222211


Q ss_pred             -------CCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        253 -------DSS-------HGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       253 -------~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                             +|+       ....|...+.++.++|+.++|+..|-..+.
T Consensus       666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence                   121       145677788888899999999988877664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	341
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-07
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		7e-07
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		4e-04
2q7f_A	243	Crystal Structure Of Yrrb: A Tpr Protein With An Un		3e-05
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-04

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 209
               EA   +G  ++     + A+ +Y++ L++   NAE + NL    +    YD  +  
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
           +++AL L  + N A+ WYN+ +      D   AI+    AL +D ++  ++ NL   + +
Sbjct: 66  YQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123
Query: 270 EG 271
           +G
Sbjct: 124 QG 125

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
           N+A+ WYN+ +      D   AI+    AL +D ++  +  NL     ++G  + A  Y 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
           Q A    P   E  YN        GD  E+    +K+L+L P ++
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
           AE + NL    +    YD  +  +++AL L  +  +A+ WYN+ +      D   AI+  
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYY 58
Query: 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD 306
             AL +D     +  NL     ++G  + A  Y Q A    P   E  YN        GD
Sbjct: 59  QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118
Query: 307 LQESYNIVKKSLDLHP 322
             E+    +K+L+L P
Sbjct: 119 YDEAIEYYQKALELDP 134

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 4/208 (1%)
Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
           P   V+  NL  +F     + +++ +++  +  D   ++A   +G         + A+  
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQY-DMVVTCFERALSLALNENAADVWYNISHVAI 234
           Y R L +   +A +  NLA C +Y Q   D+ +  + RA+ L    +  D + N+++   
Sbjct: 226 YLRALSLSPNHAVVHGNLA-CVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK 282
Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
                  A  C + AL +  +H  S NNLA ++  +G+IE A    + A    P     H
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP 322
            N A +    G LQE+    K+++ + P
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAIRISP 370

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 209
               EA   +G  ++     + A+ +Y++ L++   NAE + NL    +    YD  +  
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
           +++AL L  N   A+ WYN+ +      D   AI+    AL +  ++  ++ NL   + +
Sbjct: 66  YQKALELYPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQK 123
Query: 270 EG 271
           +G
Sbjct: 124 QG 125

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 47/105 (44%)
Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
           N+A+ WYN+ +      D   AI+    AL +  ++  +  NL     ++G  + A  Y 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
           Q A    P   E  YN        GD  E+    +K+L+L+P ++
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA 111

>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
           E AL FY + L++    A  +          + Y      FE+AL   + EN  D++Y +
Sbjct: 74  ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENG-DLFYML 131
Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
             V + +   +LA+  L  A+ ++ +   ++    +  A EG ++ A +   A     P 
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324
             +  YN  V      + +++  ++ K++D+ P H
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
           N+A+ W N+ +      D + AI+    AL +D ++  +  NL     ++G  ++A  Y 
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
           Q A    P   +  Y +       GD Q++    +K+L+L P ++
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-19
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-18
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-18
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	6e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-10
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	7e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	8e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	9e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	8e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 90.7 bits (226), Expect = 1e-20
 Identities = 34/219 (15%), Positives = 81/219 (36%), Gaps = 6/219 (2%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           + LA       +   + ++   + +++      +  +   HF   + + +  F    ++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
               AE ++NL        Q    +  +  A  L L  +  D + N++   +   D   A
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHA--LRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
           +Q    AL  +      +++L  L    G +E A      A  + P       N   + N
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 303 LAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
             G++  + +  +K++ L P    ++    ++L++   +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 6/218 (2%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            L+ I      +  S  +  L +K++    EA + +G  +    Q + A+  YR  L++ 
Sbjct: 38  LLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
               + + NLA     +   +  V  +  AL    N +   V  ++ ++   +     A 
Sbjct: 98  PDFIDGYINLAAALVAAGDMEGAVQAYVSAL--QYNPDLYCVRSDLGNLLKALGRLEEAK 155

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
            C   A+    +  ++ +NL  +   +G I  A  + + A    P   + + N   +   
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
           A     +     ++L L P H+        +  +    
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.4 bits (189), Expect = 9e-16
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 6/216 (2%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           NL  +F     + +++ +++  +  D   ++A   +G         + A+  Y R L + 
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
             +A +  NLA   +     D+ +  + RA+   L  +  D + N+++          A 
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVAEAE 291

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
            C + AL +  +H  S NNLA ++  +G+IE A    + A    P     H N A +   
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLE 335
            G LQE+    K+++ + P  + ++    + L++++
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.0 bits (162), Expect = 3e-12
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 2/183 (1%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           NL  + +       +V  Y   L            +   ++     ++A+  YRR +++ 
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
            +  + + NLA              C+  AL   L    AD   N++++     +   A+
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTAL--RLCPTHADSLNNLANIKREQGNIEEAV 325

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
           +    AL +      + +NLA +  ++G ++ A  + + A   SP   + + N       
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

Query: 304 AGD 306
             D
Sbjct: 386 MQD 388

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 4/203 (1%)

Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
            + L   +    N   +    +  L+ D +  +A A + V      +P++A   YR+ L 
Sbjct: 40  YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99

Query: 182 MGLYNAELFNNLALCCFYSQQ--YDMVVTCFERALSLALNENAADVWYNISHVAIGISDT 239
               NA + NN     F  +Q  Y+        A    L    + V+ N+  V++ +   
Sbjct: 100 SDSRNARVLNNYGG--FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157

Query: 240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299
             A +    +L ++ +       +A L  +E     A  Y    A        +      
Sbjct: 158 AQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIR 217

Query: 300 ISNLAGDLQESYNIVKKSLDLHP 322
           ++ +  D   + +   +   L+P
Sbjct: 218 LAKVFEDRDTAASYGLQLKRLYP 240

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 8/158 (5%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
             + +  L L        +       +A  L ++ ++AD    ++ V     + +LA + 
Sbjct: 36  ARDAYIQLGLGYLQRGNTEQAKVPLRKA--LEIDPSSADAHAALAVVFQTEMEPKLADEE 93

Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS--PYLYETHYNQAVISNL 303
              AL+ DS +    NN       +   E A   L  A+  +  P       N  ++S  
Sbjct: 94  YRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
                ++    +KSL L+           D+L K  +Y
Sbjct: 154 MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 4/173 (2%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            LA +F+      ++ + Y+  L  D+     +   G   +   + E A        Q  
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 184 LY--NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241
           LY   + +F NL L     ++       FE++L L  N N   V   ++ +     +   
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP 193

Query: 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
           A Q   L       +  S      L       + A++Y        P   E  
Sbjct: 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 4/179 (2%)

Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
           G+ +      E A +  R+ L++   +A+    LA+      +  +    + +AL+   +
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--D 101

Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLAL--SIDSSHGLSQNNLAVLEAREGHIERAS 277
              A V  N             A Q L  A   ++         NL ++  +     +A 
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161

Query: 278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
            Y + +   +          A +     +   +             ++ S  +  +L +
Sbjct: 162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 9/153 (5%)

Query: 191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLAL 250
           ++ +        +       +   +    + A D +  +    +   +T  A   L  AL
Sbjct: 8   HHHSSGLVPRGSHMGDQNPLK---TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64

Query: 251 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES 310
            ID S   +   LAV+   E   + A    + A AS         N           +E+
Sbjct: 65  EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124

Query: 311 YNIVKKSLD--LHPGHSYSW----DILRKLEQY 337
           Y  + ++    L+P  S  +     +  ++++ 
Sbjct: 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 80.4 bits (199), Expect = 6e-18
 Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 5/209 (2%)

Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
           +  LA  +    +   +    +  LK D     A       + Y    + A   +R+ L 
Sbjct: 11  KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70

Query: 182 MGLYNAELFNNLALC-CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR 240
           +   +AE+ NN     C    +    +  F++AL+            N    +       
Sbjct: 71  IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130

Query: 241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV- 299
           LA   L  +L+       +   LA  +   G +  A  Y +   +    L          
Sbjct: 131 LAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWK 190

Query: 300 ISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
           I+   G+ Q +Y        L     YS 
Sbjct: 191 IAKALGNAQAAYE---YEAQLQANFPYSE 216

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 30/158 (18%), Positives = 47/158 (29%), Gaps = 9/158 (5%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
           + +   LA+     Q Y       E A  L  +      W   + +   +     A +  
Sbjct: 8   SNIKTQLAMEYMRGQDYRQATASIEDA--LKSDPKNELAWLVRAEIYQYLKVNDKAQESF 65

Query: 247 HLALSIDSSHGLSQNNL-AVLEAREGHIERASTYLQAAAASS--PYLYETHYNQAVISNL 303
             ALSI        NN    L  R      +  Y   A A    P  Y  + N+ + S  
Sbjct: 66  RQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
            G    +   +K+SL   P    ++           Q 
Sbjct: 126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278
               +++   ++   +   D R A   +  AL  D  + L+    A +       ++A  
Sbjct: 4   ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63

Query: 279 YLQAAAASSPYLYETHYNQAVI-SNLAGDLQESYNIVKK--SLDLHPGHSYSW----DIL 331
             + A +  P   E + N             ES     K  +   +P    +        
Sbjct: 64  SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123

Query: 332 RKLEQY 337
            K  Q+
Sbjct: 124 AKQGQF 129

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 82.3 bits (204), Expect = 6e-18
 Identities = 26/230 (11%), Positives = 70/230 (30%), Gaps = 18/230 (7%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           ++LA+      +  M  K   +++++D      +          ++         +L+ +
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85

Query: 183 GLYNAELFNNLALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR 240
              N   +  +  C +     + +       +A +L   +     W    H     S+  
Sbjct: 86  YPSNPVSWFAVG-CYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHD 142

Query: 241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300
            A+     A  +     L    + +      + + A  +   A + +P      +   V+
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202

Query: 301 SNLAGDLQESYNIVKKSLDLHPGHSYSWD-------------ILRKLEQY 337
           +   G+ + +      +L+                       + RKL++Y
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 25/196 (12%), Positives = 63/196 (32%), Gaps = 7/196 (3%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           +     F   +    ++  Y    +    C   +  IG+ +   +  ++A  F+ + L +
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-------LNENAADVWYNISHVAIG 235
              +  + + + +  F + ++      F  AL            +    +  N+ HV   
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248

Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
           +     A+     AL +   +  + + +  + +  G+ E A  Y   A         +  
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308

Query: 296 NQAVISNLAGDLQESY 311
                  +     E+Y
Sbjct: 309 MLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 18/189 (9%), Positives = 61/189 (32%), Gaps = 7/189 (3%)

Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
           + +  +   H+YN   ++       +++   ++A              + + +     + 
Sbjct: 23  DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82

Query: 214 LSLALNENAADVWYNISHVAIGIS-DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272
           +   L  +    W+ +    + +      A + L  A +++ ++G +        A E  
Sbjct: 83  VD--LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140

Query: 273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW---- 328
            ++A      AA      +       +   L  + + +     ++L + P   +      
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200

Query: 329 DILRKLEQY 337
            +  +  ++
Sbjct: 201 VVAFQNGEW 209

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 19/214 (8%)

Query: 139 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR--LLQMGLYNAELFNNLALC 196
            +Y       + T   A    G +     + + A+  Y     L  G +       + L 
Sbjct: 111 RRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP--MLYIGLE 168

Query: 197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH 256
              +    +    F +ALS+        V + +  VA    + + A +    AL    + 
Sbjct: 169 YGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226

Query: 257 GLSQ---------NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDL 307
           G            NNL  +  +      A  Y + A    P    T+     I +L G+ 
Sbjct: 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 286

Query: 308 QESYNIVKKSLDLHPGHSYSWD----ILRKLEQY 337
           + + +    +L L    ++S       +      
Sbjct: 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 23/178 (12%), Positives = 45/178 (25%), Gaps = 10/178 (5%)

Query: 165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 224
           YN   E  +      LQ    N ++  +LA   +Y+  + M        +    +   A 
Sbjct: 3   YNKPSETVIPESVDGLQ---ENLDVVVSLAERHYYNCDFKMCYKLTSVVME--KDPFHAS 57

Query: 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH-IERASTYLQAA 283
                    + ++         H  + +  S+ +S   +       GH  E A  YL  A
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117

Query: 284 AASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
                              +  +  ++      +  L  G                  
Sbjct: 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 35/226 (15%), Positives = 71/226 (31%), Gaps = 13/226 (5%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           L  A      +     +     IL+ D   ++       +   + +     L    L+  
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
               A  +  + +      +       F ++ +  ++      W   +H      +   A
Sbjct: 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQA 426

Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
           I     A  +     L    L +   + G+I  A+ YLQ++ A   Y         V++ 
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486

Query: 303 LAGDLQE---SYN----IVKKSLDLHPGHSYSW----DILRKLEQY 337
              D+Q     +     +VKK+       + +W       RKL+ Y
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 74.9 bits (184), Expect = 5e-15
 Identities = 35/259 (13%), Positives = 70/259 (27%), Gaps = 49/259 (18%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALL-------- 174
               +++  L+N   + + YK  L  DA C EA   +  NH      E  L+        
Sbjct: 204 YLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263

Query: 175 ------FYRRLLQMGLY-----------------------NAELFNNLALCCFYSQQYDM 205
                 F R L  + L                        +++L    A   F   ++  
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFID 323

Query: 206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265
           V+    + L   ++    DV+           +        +  +       ++   + +
Sbjct: 324 VLAITTKILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381

Query: 266 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE---SYNIVKKSLDLHP 322
                  I  A  Y   ++   P         A    + G+  +   +Y     +  L  
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT---TAARLFQ 438

Query: 323 GHSYSW----DILRKLEQY 337
           G    +        +L   
Sbjct: 439 GTHLPYLFLGMQHMQLGNI 457

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 74.5 bits (183), Expect = 6e-15
 Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 5/179 (2%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           +  A  F        ++  Y    +           +G+ H       +A  + +    +
Sbjct: 411 IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNENAADVWYNISHVAIGIS 237
             Y+  L N L +  F        +  F+ AL L        +  A  W N+ H    + 
Sbjct: 471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530

Query: 238 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 296
               AI  L+  L + ++       +A++   +     A T+L  + A SP        
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 13/217 (5%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM- 182
            +   +  +N +  + +Y+      D     A      +     + + A+  Y    ++ 
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437

Query: 183 -GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241
            G +    +  L +         +     + + +L   +    +   +  VA   SD + 
Sbjct: 438 QGTHLP--YLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQT 493

Query: 242 AIQCLHLALSIDSSHGLSQ-------NNLAVLEAREGHIERASTYLQAAAASSPYLYETH 294
           AI     AL +      ++        NL     +    + A   L      S      H
Sbjct: 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
              A++         +   + +SL + P    + D+L
Sbjct: 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 13/194 (6%)

Query: 143 KLILKRDATCMEAIAC--IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 200
           KL+++     +EA  C   G  +      + A   Y+  L +     E F+ L      +
Sbjct: 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLT 247

Query: 201 QQYDMVVTCFERALSLALNE------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS 254
              +     ++  L L  +             Y +        D     +    +++   
Sbjct: 248 ADEE-----WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302

Query: 255 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIV 314
                    A                       PY  + +       + +G+  + Y I 
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLIS 362

Query: 315 KKSLDLHPGHSYSW 328
              +D HP  + +W
Sbjct: 363 NDLVDRHPEKAVTW 376

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 76.8 bits (188), Expect = 2e-15
 Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 2/157 (1%)

Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
             E A+  YR+ L++    A   +NLA       +    +  ++ A+   ++   AD + 
Sbjct: 24  NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYS 81

Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
           N+ +    + D + A+QC   A+ I+ +   + +NLA +    G+I  A    + A    
Sbjct: 82  NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141

Query: 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH 324
           P   + + N A    +  D  +    +KK + +    
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 69.1 bits (168), Expect = 4e-13
 Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 2/217 (0%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           NLA I     N+  +V+ Y+  L+       A + +        + + AL+ Y+  +++ 
Sbjct: 14  NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
              A+ ++N+       Q     + C+ RA  + +N   AD   N++ +     +   AI
Sbjct: 74  PTFADAYSNMGNTLKEMQDVQGALQCYTRA--IQINPAFADAHSNLASIHKDSGNIPEAI 131

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
                AL +      +  NLA               ++   +      E +   +V  + 
Sbjct: 132 ASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHH 191

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340
           +     S+   K   + H         +     Y   
Sbjct: 192 SMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHP 228

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 68.7 bits (167), Expect = 6e-13
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 2/141 (1%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
           +A+  NNLA         +  V  + +AL   +    A    N++ V       + A+  
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQEALMH 65

Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
              A+ I  +   + +N+         ++ A      A   +P   + H N A I   +G
Sbjct: 66  YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125

Query: 306 DLQESYNIVKKSLDLHPGHSY 326
           ++ E+    + +L L P    
Sbjct: 126 NIPEAIASYRTALKLKPDFPD 146

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 19/111 (17%), Positives = 47/111 (42%)

Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
             AD   N++++     +   A++    AL +      + +NLA +  ++G ++ A  + 
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
           + A   SP   + + N         D+Q +     +++ ++P  + +   L
Sbjct: 67  KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.8 bits (184), Expect = 6e-15
 Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 7/222 (3%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           +    + +  +     +    +          A+   G+ HF  +    A +  +  + +
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
                  +  LAL     +        F++A+ L  N      +Y+   +   + D + A
Sbjct: 273 HP-TPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNA 329

Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
            +    A S++  +      LA L  ++G    +  +        P L E     A I  
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389

Query: 303 LAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQYFSY 340
             GD   +      +  L             ++ K       
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 19/217 (8%), Positives = 56/217 (25%), Gaps = 9/217 (4%)

Query: 127 KIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ--PEVALLFYRRLLQMGL 184
                 +N   +       L+R  +  +    +  +            L        +  
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
             A       +  F            + +++L       + +  ++       +++   +
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---PNSYIFLALTLADKENSQEFFK 297

Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
               A+ ++  +  +  +   +       + A    Q A + +P     +   A +    
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357

Query: 305 GDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
           G   ES     ++    P          +IL     +
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 25/224 (11%), Positives = 55/224 (24%), Gaps = 18/224 (8%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            LA       N     K+++  +  +          G  +F     + A   +++   + 
Sbjct: 281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
             N   +  LA   +   ++      F             +V    + +     D   AI
Sbjct: 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAI 398

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEARE----------------GHIERASTYLQAAAASS 287
           +   +A  ++         +  L  +                      A   L  A    
Sbjct: 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458

Query: 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
           P   +     A +      + E+  + + S  L           
Sbjct: 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 21/191 (10%), Positives = 56/191 (29%), Gaps = 18/191 (9%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           +  +++  L +   + + ++     +   +     +    +   +   +  F+       
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI-----------SHV 232
               E+    A        +D  +  ++ A  L   E    +   I              
Sbjct: 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL--EEVQEKIHVGIGPLIGKATILARQS 432

Query: 233 AIGISDTRL-----AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
           +   +         AI+ L  A  +D     ++  LA L+ +   I+ A    + +A  +
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492

Query: 288 PYLYETHYNQA 298
             + E      
Sbjct: 493 RTMDEKLQATT 503

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 30/231 (12%), Positives = 65/231 (28%), Gaps = 17/231 (7%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQPEVALLFYRR 178
           L  A   E L N   ++    ++        A+    +             E       R
Sbjct: 97  LRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156

Query: 179 LLQMGLYNAELFNNLAL--------CCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 230
             Q+   N  L +   +            S  YD        AL    +           
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216

Query: 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290
            +          +    +   +  +  L+     +    + ++  A   LQ +    P  
Sbjct: 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT- 275

Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
             ++   A+      + QE +   +K++DL+P +  ++     +   L+ Y
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
           A    N     F ++ ++  +  ++ A+   L+ N    + NIS   I   D    I+  
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFT 82

Query: 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
             AL I   H  +    A      G+   A   L   + +  +
Sbjct: 83  TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF 125

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 19/187 (10%), Positives = 60/187 (32%), Gaps = 14/187 (7%)

Query: 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
            G + F       A+ +Y+  +++       ++N++ C   +   + V+    +AL   +
Sbjct: 31  RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE--I 88

Query: 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA----VLEAREGHIE 274
             + +      +     + +   A+  L +        G S   +       +A +   E
Sbjct: 89  KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNE 148

Query: 275 RASTYLQAAAASSP-----YLYETHYNQAVISN---LAGDLQESYNIVKKSLDLHPGHSY 326
             S      +   P       +   ++  +  +    + +   +Y ++  +L      + 
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208

Query: 327 SWDILRK 333
              ++  
Sbjct: 209 EGYLVAN 215

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 30/264 (11%), Positives = 67/264 (25%), Gaps = 51/264 (19%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           N    F    N   ++KYY+  ++ D       + I   +      E  + F  + L++ 
Sbjct: 30  NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERA---------------------LSLALNENA 222
             +++     A        +   +                            ++ +    
Sbjct: 90  PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149

Query: 223 ADVWYNIS----------HVAIGISDTRLAIQCLHL-------------ALSIDSSHGLS 259
                                 GI D+ L +  ++              AL    S    
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209

Query: 260 QNNLA--VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS 317
              +A  +L           +                    +   L  +L ++  ++++S
Sbjct: 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269

Query: 318 LDLHPGHSYSW----DILRKLEQY 337
           ++LHP    S+      L   E  
Sbjct: 270 INLHP-TPNSYIFLALTLADKENS 292

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 15/132 (11%), Positives = 42/132 (31%), Gaps = 5/132 (3%)

Query: 202 QYDMVVTCFERALSLALNENA--ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS 259
            +        +   L+ ++    A    N  +      +   AI+    A+ +D +  + 
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE---SYNIVKK 316
            +N++      G +E+   +   A    P   +    +A  +   G+  +     +++  
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL 121

Query: 317 SLDLHPGHSYSW 328
           + D         
Sbjct: 122 NGDFDGASIEPM 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR 178
            ++      I   + +   S    K I       M+ I     + +   + E A +F+R 
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 179 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISD 238
           L     YN +    LA      +Q+      +  A   AL +N     ++     + +  
Sbjct: 62  LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA--FALGKNDYTPVFHTGQCQLRLKA 119

Query: 239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEA 268
              A +C  L +   +   L     + L+A
Sbjct: 120 PLKAKECFELVIQHSNDEKLKIKAQSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 9/128 (7%), Positives = 33/128 (25%), Gaps = 2/128 (1%)

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
            + +  +     +   + A   +   + +     F        +    D    ++ +   
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC--IYDFYNVDYIMGLAAIYQI 82

Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
               + A     +A ++  +      +    + R     +A    +     S        
Sbjct: 83  KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIK 142

Query: 296 NQAVISNL 303
            Q+ +  +
Sbjct: 143 AQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 11/110 (10%), Positives = 29/110 (26%)

Query: 216 LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
            A+ ++  D  Y+ ++          A          D  +      LA +   +   ++
Sbjct: 29  NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ 88

Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
           A+     A A     Y   ++            ++    +  +       
Sbjct: 89  AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 70.2 bits (171), Expect = 6e-14
 Identities = 41/233 (17%), Positives = 67/233 (28%), Gaps = 13/233 (5%)

Query: 110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIA--CIGVNHFYND 167
           +     P +Q  R+  A+     +     V      + R                +FY+ 
Sbjct: 57  IKPSSAPELQAVRM-FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115

Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
            P+ AL    +       + E             + D+     ++      +E+A     
Sbjct: 116 NPDAALRTLHQGD-----SLECMAMTVQILLKLDRLDLARKELKKMQ--DQDEDATLTQL 168

Query: 228 NISHVAIGISDTRL--AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285
             + V++     +L  A           S   L  N  A     +G  E A   LQ A  
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228

Query: 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSL-DLHPGHSYSWDILRKLEQY 337
                 ET  N  V+S   G   E  N     L D H  H +  +   K   +
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDF 281

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 3/199 (1%)

Query: 130 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL 189
           +        +       K       ++   G+  F  + P  A    ++ +++       
Sbjct: 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNS 272

Query: 190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249
           +  +AL              F++AL L  + N + V+Y+   +   + +   A +    A
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330

Query: 250 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309
             +D  +      LA L  RE   +   T    A    P   E     A I     D  +
Sbjct: 331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390

Query: 310 SYNIVKKSLDLHPGHSYSW 328
           +      +++L       +
Sbjct: 391 ALKQYDLAIELENKLDGIY 409

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 19/172 (11%), Positives = 50/172 (29%), Gaps = 7/172 (4%)

Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
           E  L       ++    A    +  +  F            ++A+ L    N+   +  +
Sbjct: 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS---YIYM 276

Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
           + +    +D+         AL +DS++     +   +     + ++A      A    P 
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336

Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
               +   A ++       +   +  ++    P          +IL     +
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 36/222 (16%), Positives = 73/222 (32%), Gaps = 11/222 (4%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            +A I    N+      Y+   LK D+         G  +F     + A   + +  ++ 
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
             N   +  LA   +   ++D   T F  A        A +V    + +    +D   A+
Sbjct: 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKAL 392

Query: 244 QCLHLALSIDSSHGLSQNNLAVL---------EAREGHIERASTYLQAAAASSPYLYETH 294
           +   LA+ +++        +A L              +   A+  L+ A+   P   +  
Sbjct: 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
              A +     D+ E+  + ++S DL          +   E 
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 18/171 (10%), Positives = 46/171 (26%), Gaps = 12/171 (7%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            LA +    N        +    ++     E            +  + AL  Y   +++ 
Sbjct: 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402

Query: 184 LYNAELFNNLALC---------CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI 234
                ++  +A               + +       E+A  L  +  +      ++ + +
Sbjct: 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKL 460

Query: 235 GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285
              D   AI     +  +  +       +   EA +   +R  +    A  
Sbjct: 461 QQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ-QRIRSDPVLAKK 510

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 6/140 (4%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
            A    +     F +++YD  +  +  A  L L E+    + N+S   + + D +  ++ 
Sbjct: 5   YALALKDKGNQFFRNKKYDDAIKYYNWA--LELKED-PVFYSNLSACYVSVGDLKKVVEM 61

Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA---ASSPYLYETHYNQAVISN 302
              AL +   +       A      G    A   L   +     +    E    + +   
Sbjct: 62  STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121

Query: 303 LAGDLQESYNIVKKSLDLHP 322
               L+E +  +  +     
Sbjct: 122 AMSKLKEKFGDIDTATATPT 141

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 8/157 (5%)

Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
           G   F N + + A+ +Y   L+  L  +   ++NL+ C         VV    +AL   L
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALE--LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE--L 68

Query: 219 NENAADVWYNISHVAIGISDTRLAIQC---LHLALSIDSSHGLSQNNLAVLEAREGHIER 275
             + + V    +    G+     A+     L L    + +         + +     ++ 
Sbjct: 69  KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKE 128

Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN 312
               +  A A+   L      +            S  
Sbjct: 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 26/244 (10%), Positives = 62/244 (25%), Gaps = 31/244 (12%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           NL+  +  + ++   V+     L+      + +      +    +   A+     L   G
Sbjct: 44  NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103

Query: 184 LYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV-----------WYNI 229
            +N    E      L      +        + A +     +                   
Sbjct: 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163

Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSH-----GLSQNNLAVLEAREGHIERASTYLQAAA 284
                GI    L       +   D         L + +    +  +    +A+   +   
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223

Query: 285 AS-------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRK 333
                       L  +  +  +   L  D   ++  +KK+++L P    S+     I+  
Sbjct: 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMAD 282

Query: 334 LEQY 337
               
Sbjct: 283 RNDS 286

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 4/170 (2%)

Query: 141 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS 200
           Y+  + K      +    + + +  N   + A LFY+ LLQ    N +     A      
Sbjct: 42  YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101

Query: 201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISD-TRLAIQCLHLALSIDSSHGLS 259
            Q    +  +E+ L   L  +       + +     ++  +  ++  +  LS  +    +
Sbjct: 102 GQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159

Query: 260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309
           +    + +      E+A   LQ      P   E       I  +  ++  
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 18/151 (11%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 173 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232
           + ++  + +    +++L   LAL    ++ YD     ++    L    N  D     + +
Sbjct: 40  MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL--LQKAPNNVDCLEACAEM 97

Query: 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS-TYLQAAAASSPYLY 291
            +     + A++     L +++ +  +   L          E+          +S   + 
Sbjct: 98  QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157

Query: 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322
              Y   +        +++ N ++K +   P
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFP 188

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            LA  ++   N   +  +YK +L++    ++ +           Q + AL  Y ++LQ+ 
Sbjct: 59  ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118

Query: 184 LYNAELFNNLALCCFYS-QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
             N      L    + + +Q    +    + LS           Y      +  +    A
Sbjct: 119 ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKA 176

Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
              L   +    S    Q  L  +   E  + R
Sbjct: 177 RNSLQKVILRFPSTEA-QKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 17/143 (11%), Positives = 48/143 (33%), Gaps = 20/143 (13%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
           + +           + Q    V+ F + ++L  N +  +++Y  +        ++LA   
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLA--- 57

Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
                            LA+   +  + ++A  + +     +P   +     A +    G
Sbjct: 58  ---------------TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102

Query: 306 DLQESYNIVKKSLDLHPGHSYSW 328
             +++  + +K L L   +  + 
Sbjct: 103 QEKDALRMYEKILQLEADNLAAN 125

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.6 bits (168), Expect = 5e-13
 Identities = 23/230 (10%), Positives = 65/230 (28%), Gaps = 18/230 (7%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
            + A    G  +   ++ +   IL+      E             +P  A+   +   ++
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV---------- 232
              N E F  ++   +    +++ ++     L L  +++    + +   V          
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESA 264

Query: 233 --AIGISDTRLAIQCLHLALSIDSSH----GLSQNNLAVLEAREGHIERASTYLQAAAAS 286
              I       A       +  + S       S+  +    +++     A          
Sbjct: 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324

Query: 287 SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
            P       ++A    +     E+    + + + +       + L K ++
Sbjct: 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 13/232 (5%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           L L K       +  ++  +   +  D     A            + + AL    +++Q+
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL-------------ALNENAADVWYNI 229
            +                 + D     F++ L                +  +      + 
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
           +  A G  D   AI  L   L +       +   A    +EG   +A + L+AA+     
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209

Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
             E  Y  + +    GD + S + V++ L L   H   +   +++++    +
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 28/249 (11%), Positives = 71/249 (28%), Gaps = 37/249 (14%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
             A +F  +     ++     +++       A    G       + + A   ++++L+  
Sbjct: 65  RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124

Query: 184 LYNAELFN---------------NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228
               E                  + AL  F S  Y   +   ++ L   +    A++   
Sbjct: 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL--EVCVWDAELREL 182

Query: 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
            +   I   + R AI  L  A  + + +  +   ++ L  + G  E + + ++       
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242

Query: 289 YLYETHYNQAVISNL------------AGDLQESYNIVKKSLDLHPGHSYSW-------- 328
                  +   +  L             G   ++ +  +  +   P  +           
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERIC 302

Query: 329 DILRKLEQY 337
               K E+ 
Sbjct: 303 HCFSKDEKP 311

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 35/249 (14%), Positives = 70/249 (28%), Gaps = 32/249 (12%)

Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
           R   A+ F        ++   K   K      EA   I   ++     E++L   R  L+
Sbjct: 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239

Query: 182 MGLYNAELFNNLALCC------------FYSQQYDMVVTCFERALSL--ALNENAADVWY 227
           +   +   F +                     +Y    + +E  +    ++ E       
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299

Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
            I H          AI+     L ++  +  +  + A     E   + A    + A   +
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359

Query: 288 PYLYETHYNQAVISNLAGDLQES-YNIV-----------------KKSLDLHPGHSYSWD 329
               +          L    Q+  Y  +                 K +L  HP +  + +
Sbjct: 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEE 419

Query: 330 ILRKLEQYF 338
             +K E+ F
Sbjct: 420 EKKKAEKKF 428

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 14/154 (9%)

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
           ++     ++  +       Y   +   E+ L L               +A G      A+
Sbjct: 1   MH-HHHHHSSGVDLGTENLYFQSMADVEKHLELG-----------KKLLAAG--QLADAL 46

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
              H A+  D  + ++    A +    G  + A   L                +  +   
Sbjct: 47  SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337
            G L E+ +  KK L  +P  +   +   +L + 
Sbjct: 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 1/176 (0%)

Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
           +         F N+    A+  + +L      +  ++N  A+C +   +YD+     E  
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 214 LS-LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH 272
            S +   +  +  +     + +      LAIQ    A+  D++       +      +G+
Sbjct: 64  FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123

Query: 273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
              A  Y++     +    +  Y          +  ++ +   K L+L P     +
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY 179

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 16/159 (10%), Positives = 46/159 (28%), Gaps = 9/159 (5%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
           N ++    A   F +  Y   +  F +  +     N+  ++   +     ++   LA + 
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKD 59

Query: 246 LHL---ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
           +      ++   +          +  ++G    A    QAA        + +        
Sbjct: 60  IETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119

Query: 303 LAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
             G+   +   ++K +         +          ++Y
Sbjct: 120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 35/221 (15%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
              KI        ++++ Y+  + RD T ++    IG   +      +A+ +  + ++  
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR--- 240
             + ++F  L    +Y+++Y    + F + L   L  N    +   +             
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQG 196

Query: 241 LAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300
           LA       + + +  G                                L E +   A  
Sbjct: 197 LAKPYYEKLIEVCAPGGAKYK--------------------------DELIEANEYIAYY 230

Query: 301 SNLAGDLQESYNIVKKSLDLHPGHSYSWD----ILRKLEQY 337
             +  D  ++    K  L L P +  + D     L     +
Sbjct: 231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 64.8 bits (158), Expect = 5e-13
 Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 142 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201
             ++       +E +  +G N +   + + A   ++ L  +  Y+A  F  L  C     
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH----G 257
            Y+  +  +       ++ N     ++ +   + + D   A    + A ++ ++      
Sbjct: 67  LYEQALQSYSYG--ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124

Query: 258 LSQNNLAVLEAREGHIER 275
           L+    A+LEA     +R
Sbjct: 125 LAARAGAMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 15/126 (11%), Positives = 30/126 (23%)

Query: 216 LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
             L+E+  +  Y +            A +       +D         L       G  E+
Sbjct: 11  RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70

Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE 335
           A       A          ++ A      GDL  + +    +  L         +  +  
Sbjct: 71  ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130

Query: 336 QYFSYL 341
                +
Sbjct: 131 AMLEAV 136

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 17/105 (16%), Positives = 28/105 (26%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            L            + K ++ +   D         +G         E AL  Y     M 
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228
           +       + A C       D   + F  A +LA  + A +    
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 9/96 (9%), Positives = 20/96 (20%), Gaps = 4/96 (4%)

Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
           L +   +          L   + + G  + A    QA      Y               G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 306 DLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
             +++         +            +   +L   
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 193
           +M  +   Y           E     G++         A L +  + Q      E + +L
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253
            L    +++  + +     A    L+     V   ++       +   A+  L   L   
Sbjct: 62  GLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119

Query: 254 SSH---------------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298
             +                L+  +     A         T L AA   +P   + H +  
Sbjct: 120 PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179

Query: 299 VISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
           V+ NL+ +   +   ++++++L P  +  W      L    + 
Sbjct: 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 12/179 (6%)

Query: 154 EAIACIGVNHFYND----QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 209
            A+A              QP+   L    L      +     +         +Y    T 
Sbjct: 107 AALAS------LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160

Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
              AL   +N N A +  ++  +    ++   A   L  A+ +        N L    A 
Sbjct: 161 LHAAL--EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218

Query: 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
               + A      A   +P      YN AV  +       +   + +++ +  G +   
Sbjct: 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 9/194 (4%)

Query: 108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND 167
           S+  Q D     ++  +    F   N            L+ +    +  A +GV +  ++
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186

Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
             + A    RR +++   +A+L+N L        +    +  + RAL   +N     V Y
Sbjct: 187 NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL--DINPGYVRVMY 244

Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA--AA 285
           N++     +S   LA + L  A+ +           +    R         + +      
Sbjct: 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS-----MWDFFRMLLNVM 299

Query: 286 SSPYLYETHYNQAV 299
           + P L E  Y Q V
Sbjct: 300 NRPDLVELTYAQNV 313

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 44/252 (17%), Positives = 80/252 (31%), Gaps = 32/252 (12%)

Query: 112 QPDGPFIQVSR-LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 170
           + + P     +            ++P +V  ++  +++D   MEA   +G     N+Q  
Sbjct: 56  EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115

Query: 171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN-- 228
           +A+   RR L++   N      LA+                  L        A +     
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAE 173

Query: 229 --ISHVAIGISDTRL-----------AIQCLHLALSIDSSHGLS--QNNLAVLEAREGHI 273
                  +G S   L             +    A+ +D +      Q  L VL    G  
Sbjct: 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233

Query: 274 ERASTYLQAAAASSPYLYETHYNQ-AVISNLAGDLQE---SYNIVKKSLDLHPGHSYSW- 328
           ++A     AA +  P  Y       A ++N     +E   +Y    ++L+L PG+  S  
Sbjct: 234 DKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVAAYR---RALELQPGYIRSRY 289

Query: 329 ---DILRKLEQY 337
                   L  +
Sbjct: 290 NLGISCINLGAH 301

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 30/179 (16%), Positives = 49/179 (27%), Gaps = 10/179 (5%)

Query: 154 EAIACIGVNHFYND----QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTC 209
           +A           D     P  A L        G         +         +  V   
Sbjct: 150 QACEI------LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKEL 203

Query: 210 FERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
           F  A+ L       DV   +  +     +   A+ C   ALS+  +  L  N L    A 
Sbjct: 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263

Query: 270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
               E A    + A    P    + YN  +     G  +E+     ++L++        
Sbjct: 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 4/137 (2%)

Query: 172 ALLFYRRLLQM--GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
               +   +++     + ++   L +    S +YD  V CF  ALS+    N   +W  +
Sbjct: 200 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKL 257

Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
                  + +  A+     AL +   +  S+ NL +     G    A  +   A      
Sbjct: 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317

Query: 290 LYETHYNQAVISNLAGD 306
                     +S     
Sbjct: 318 SRGPRGEGGAMSENIWS 334

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 8/166 (4%)

Query: 165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA-- 222
                +        L +M   +AE    L      S   D+    +++            
Sbjct: 10  IESDVDFWDKLQAELEEMAKRDAEAHPWL------SDYDDLTSATYDKGYQFEEENPLRD 63

Query: 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 282
               +      +   D   A+     A+  D  H  +   L   +A       A + L+ 
Sbjct: 64  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

Query: 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
                P         AV        +++  I++  L   P +++  
Sbjct: 124 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 169

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           ++  +  +    +  S K Y    +            G+         V +LF    +  
Sbjct: 35  ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
              +AE +  L +    ++     +   +R L   L  N       ++      S  + A
Sbjct: 95  DPGDAEAWQFLGITQAENENEQAAIVALQRCLE--LQPNNLKALMALAVSYTNTSHQQDA 152

Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST-----------YLQAAAASSPYL- 290
            + L   +  +  +     N          + ++             YL+AA  +   + 
Sbjct: 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212

Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
            +      V+ +L+G+   + +    +L + P     W      L   ++ 
Sbjct: 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
                      ++P+++ + +  + +D    EA   +G+    N+  + A++  +R L++
Sbjct: 69  FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN--ISHVAIGISDTR 240
              N +    LA+    +          +  +    N     +  N   S          
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKS 186

Query: 241 L--------AIQCLHLALSIDSSHG--LSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290
                      +    A   +        Q  L VL    G   RA     AA    P  
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
           Y                +E+     ++L++ PG   S          L  Y
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 10/218 (4%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            L        N   ++   +  L+     ++A+  + V++      + A    +  ++  
Sbjct: 104 FLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN 163

Query: 184 LYNAELFNNLALCCFYSQQYDM----------VVTCFERALSLALNENAADVWYNISHVA 233
                L  N       +++             V   +  A     +    D+   +  + 
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223

Query: 234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET 293
               +   AI   + AL++        N L    A     E A      A    P    +
Sbjct: 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283

Query: 294 HYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL 331
            YN  +     G  +E+ +    +L L         + 
Sbjct: 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVP 321

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 25/209 (11%), Positives = 64/209 (30%), Gaps = 16/209 (7%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRL--- 179
           + LA  +   ++   + +  K  +K++      +     +     +   + +    L   
Sbjct: 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196

Query: 180 ---------LQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 230
                        + + +L   L +    S +++  +  F  AL++        +W  + 
Sbjct: 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLG 254

Query: 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290
                   +  A++    AL I      S+ NL +     G    A +    A +     
Sbjct: 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314

Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLD 319
                       ++G++  +  I    +D
Sbjct: 315 RNQQQVPH--PAISGNIWAALRIALSLMD 341

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 10/148 (6%)

Query: 200 SQQYDMVVTCFERALSL------ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253
           + +++      E              E A   W + +  A        + +  +      
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 254 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNI 313
                      +   +EG +     +++AA    P   E      +      + Q +   
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121

Query: 314 VKKSLDLHPGHSYSW----DILRKLEQY 337
           +++ L+L P +  +              
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQ 149

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 6/172 (3%)

Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
           E A   + + ++    +A  + N A       + +  +  +++AL L  + +AA  +Y  
Sbjct: 40  EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA 97

Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
            +V +     + A      AL     +G     L  +  +    + A  YLQ A   +  
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157

Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
             E  +   +     G L E+ +      +  PGH+ ++          E  
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 32/218 (14%), Positives = 77/218 (35%), Gaps = 6/218 (2%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
                     +   + + +   ++ +                 ++ E AL FY + L++ 
Sbjct: 28  QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
              A  +          + Y      FE+AL         D++Y +  V + +   +LA+
Sbjct: 88  SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLAL 145

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             L  A+ ++ +   ++    +  A EG ++ A +   A     P   +  YN  V    
Sbjct: 146 PYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
             + +++  ++ K++D+ P H  +      +      +
Sbjct: 206 KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 17/157 (10%), Positives = 50/157 (31%), Gaps = 6/157 (3%)

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
             +               Y+     F +A+    N+  A  + N +++   +++   A+ 
Sbjct: 21  MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALA 78

Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
               AL +DSS   +      +   +   + A    + A  +     +  Y    +    
Sbjct: 79  FYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138

Query: 305 GDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
              + +   ++++++L+   + +       L      
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 25/181 (13%), Positives = 39/181 (21%), Gaps = 10/181 (5%)

Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
                LL  R  ++    +   +  LA                +R L  AL+    +   
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL--ALHPGHPEAVA 61

Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
            +  V         A   L  A      H      L       G  E A+     A    
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121

Query: 288 PYLYETHYNQAVISNLAGD--------LQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS 339
           P                 D         Q    + +    + P    S D     +   +
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACA 181

Query: 340 Y 340
            
Sbjct: 182 R 182

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 62.9 bits (153), Expect = 4e-11
 Identities = 13/149 (8%), Positives = 31/149 (20%), Gaps = 2/149 (1%)

Query: 134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL 193
           + P  +   +  ++       A   +              +  +R L +   + E    L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID 253
               +  Q++       ++A           +   + H          A      A  + 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQA--SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121

Query: 254 SSHGLSQNNLAVLEAREGHIERASTYLQA 282
                    L     R             
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.0 bits (135), Expect = 6e-09
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 5/170 (2%)

Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
            L LA    G+ +        +  L       EA+A +G   +   +   A +  ++   
Sbjct: 26  WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85

Query: 182 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241
               +  +   L      + Q +     + RA    L      +   + +    + D R 
Sbjct: 86  AAPEHPGIALWLGHALEDAGQAEAAAAAYTRA--HQLLPEEPYITAQLLNWRRRLCDWRA 143

Query: 242 A---IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
                  +  A++           L+   +    +  A T  QA AAS  
Sbjct: 144 LDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVR 193

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 13/232 (5%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           L L K       +  ++  +   +  D     A            + + AL    +++ +
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL-------------ALNENAADVWYNI 229
            +                 + D     F++ L                +  +      + 
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY 289
           +  A   +D   AI  L   L +       +   A    +EG   +A + L+AA+     
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD 186

Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSYL 341
             E  Y  + +    GD + S + V++ L L   H   +   +++++    +
Sbjct: 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 22/235 (9%), Positives = 61/235 (25%), Gaps = 22/235 (9%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
            + A       +   ++ +   IL+      E             +P  A+   +   ++
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV---------- 232
              N E F  ++   +    +++ ++     L L  +++    + +   V          
Sbjct: 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESA 241

Query: 233 --AIGISDTRLAIQCLHLALSIDSSHGLSQ----NNLAVLEAREGHIERASTYLQAAAAS 286
              I       A       +  + S           +    +++     A          
Sbjct: 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301

Query: 287 SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
            P       ++A    +     E+    + + + +              R L+Q 
Sbjct: 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 29/249 (11%), Positives = 69/249 (27%), Gaps = 37/249 (14%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
             A +F  +     ++     ++        A    G       + + A   ++++L+  
Sbjct: 42  RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101

Query: 184 LYNAELFNNL---------------ALCCFYSQQYDMVVTCFERALSLALNENAADVWYN 228
               E                    AL  F    Y   +T  ++ L +      A++   
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELREL 159

Query: 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
            +   I   + R AI  L  A  + S +  +   ++ L  + G  E + + ++       
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

Query: 289 YLYETHYNQAVISNL------------AGDLQESYNIVKKSLDLHPGHSYSW-------- 328
                  +   +  L             G   ++ +  +  +   P  +           
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC 279

Query: 329 DILRKLEQY 337
               K E+ 
Sbjct: 280 HCFSKDEKP 288

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 19/171 (11%), Positives = 54/171 (31%), Gaps = 21/171 (12%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
           + E    L      + Q    ++ F  A  +  + +    +Y  + V + +  ++ A+  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAA--VDGDPDNYIAYYRRATVFLAMGKSKAALPD 59

Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL-- 303
           L   +++      ++     L  ++G ++ A    +    S+P   E    ++ +     
Sbjct: 60  LTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119

Query: 304 -------------AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
                          D   +   + K L++    +       +   K  + 
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 170

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 14/189 (7%)

Query: 122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ 181
           R   A+ F        ++   K   K  +   EA   I   ++     E++L   R  L+
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216

Query: 182 MGLYNAELFNNL------------ALCCFYSQQYDMVVTCFERALSL--ALNENAADVWY 227
           +   +   F +             A       +Y    + +E  +    ++ E       
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276

Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
            I H          AI+     L ++  +  +  + A     E   + A    +AA   +
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

Query: 288 PYLYETHYN 296
               +    
Sbjct: 337 ENDQQIREG 345

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 14/185 (7%)

Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
           G   +   Q + A+  Y +  ++   +    NN A   +   +Y+  ++    A+     
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV--EQG 68

Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279
                 +  IS     I +    +  L   +       L+++  A +  +  + E+    
Sbjct: 69  REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LTEHRTADILTKLRNAEKELKK 127

Query: 280 LQAAAASSPYLYETHYNQAVISNLAGDLQE---SYNIVKKSLDLHPGHSYSW----DILR 332
            +A A  +P   E    +        D      +Y    + +   P  +  +      L 
Sbjct: 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT---EMIKRAPEDARGYSNRAAALA 184

Query: 333 KLEQY 337
           KL  +
Sbjct: 185 KLMSF 189

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 8/156 (5%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
            A+         + ++Q+D  +  + +A    L+++      N +       +   AI  
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWE--LHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
           L+ A+            ++   AR G+       L+           T +  A I     
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK-SLTEHRTADILTKLR 119

Query: 306 DLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
           + ++     +    ++P  +               +
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
             A I   L N    +K  +     +    E     G  +F       A+  Y  +++  
Sbjct: 110 RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
             +A  ++N A        +   +    +A+    + N    +   +   I + +   A+
Sbjct: 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASAL 227

Query: 244 QCLHLALSIDSSHGLSQNNLAV 265
           + L  A + D+      +   +
Sbjct: 228 ETLDAARTKDAEVNNGSSAREI 249

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 22/185 (11%), Positives = 44/185 (23%), Gaps = 3/185 (1%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            ++K F  + N    +   K  ++     +                E  L        + 
Sbjct: 77  VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR-TADILTKLRNAEKELKKAEAEAYVN 135

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
              AE         F    +   V  +   +        A  + N +     +     AI
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMI--KRAPEDARGYSNRAAALAKLMSFPEAI 193

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
              + A+  D +   +    A  +        A   L AA      +      + +    
Sbjct: 194 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253

Query: 304 AGDLQ 308
               Q
Sbjct: 254 YKASQ 258

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 6/157 (3%)

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQ 244
                + +  +    + +Y   V   E+      +    DV  ++    +         +
Sbjct: 6   IRQVYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 245 CLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA 304
            L  +L+    +      L +   +    + A   L   A ++P  +   +   V  +  
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123

Query: 305 GDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
           G   E+ +  K +L L P              ++ ++
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 2/175 (1%)

Query: 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
            G++H    +   A++   ++     ++ ++  +L +    +   D      ER+L+   
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-- 71

Query: 219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST 278
             +   V   +    + +    LA+  L      +  +   +  L V     G  + A  
Sbjct: 72  APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131

Query: 279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK 333
             + A    P   + H   A      G  +E+    KK+ +L  G S    ++ +
Sbjct: 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 13/126 (10%), Positives = 39/126 (30%), Gaps = 4/126 (3%)

Query: 216 LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
           +  ++     + +             A+  L      D+       +L +   + G ++R
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DIL 331
            +  L+ + A +P   +      +          +  ++ K  + +P +          L
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 332 RKLEQY 337
             L ++
Sbjct: 121 DNLGRF 126

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 60.7 bits (147), Expect = 1e-11
 Identities = 16/114 (14%), Positives = 43/114 (37%), Gaps = 2/114 (1%)

Query: 142 YKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ 201
             ++ +  +  +E +  +  N + +   E A   ++ L  +  Y++  F  L  C     
Sbjct: 10  IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69

Query: 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS 255
           QYD+ +  +       ++       ++ +   +   +   A   L LA  + ++
Sbjct: 70  QYDLAIHSYSYG--AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 2/135 (1%)

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
              L ++     E   +LA   + S  Y+     F+      L+   +  +  +      
Sbjct: 10  IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC--VLDHYDSRFFLGLGACRQA 67

Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
           +    LAI        +D        + A    + G +  A + L  A        E   
Sbjct: 68  MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127

Query: 296 NQAVISNLAGDLQES 310
               +S++   ++  
Sbjct: 128 LSTRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 12/94 (12%), Positives = 25/94 (26%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           +LA           +   ++ +   D         +G       Q ++A+  Y     M 
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLA 217
           +       + A C     +     +    A  L 
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 28/225 (12%)

Query: 138 SVKYYKLILKRDATCMEAIACIGVN-HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC 196
           +++  + +L       +A+   G   +   D    A +   + +++     E +N L   
Sbjct: 87  TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEV 146

Query: 197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL---------AIQCLH 247
            +         TCF  AL+   N        N+S V   +              +++   
Sbjct: 147 YWKKGDVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 248 LALSIDSSHGLSQNNLAV--------LEAREGHIERASTYLQAAAA---SSPYLYETHYN 296
           LA+ +D   G S   L                  ++A +    A      +    + H N
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 297 QAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
           +A +        E+     ++  L P           +L  L + 
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 25/209 (11%), Positives = 54/209 (25%), Gaps = 28/209 (13%)

Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM-VVTCFER 212
                        ++ E  L     +L      A+           +  Y         +
Sbjct: 69  SVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSK 128

Query: 213 ALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL------ 266
           A+   L     + W  +  V     D   A  C   AL+   +  +S  NL+++      
Sbjct: 129 AVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQT 185

Query: 267 ---EAREGHIERASTYLQAAAASSPYLYETHYN--------QAVISNLAGDLQESYNIVK 315
              +    H+  +    + A         + Y                    Q++ +   
Sbjct: 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245

Query: 316 KSLDLHPGHSYSWD-------ILRKLEQY 337
           ++  +    S + D       + +  E Y
Sbjct: 246 QAEKVDRKASSNPDLHLNRATLHKYEESY 274

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 31/214 (14%), Positives = 56/214 (26%), Gaps = 24/214 (11%)

Query: 124 NLAKIFEGLNNMPMS-VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
              K      +            +K +   +EA   +G  ++       A   +   L  
Sbjct: 107 LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166

Query: 183 GLYNAELFNNLALCC---------FYSQQYDMVVTCFERALSLALNENAADVWYNI---- 229
              N     NL++            +S+     V   + A+ + + +     WY +    
Sbjct: 167 CK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAY 223

Query: 230 --SHVAIGISDTRL--AIQCLHLALSIDSSHGLSQ---NNLAVLEAREGHIERASTYLQA 282
              +   G +      A+     A  +D     +     N A L   E     A      
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283

Query: 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKK 316
           AAA  P   E    +  +      L        K
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 42/254 (16%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYN----------DQPEVAL 173
           N A ++  +  +     Y   +                               +Q E A 
Sbjct: 99  NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158

Query: 174 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV---VTCFERALSLALNENAADVWYNI- 229
           + + + L+    N E  + LA+  +    +      +    +A+ L  N +   +   + 
Sbjct: 159 VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLA 216

Query: 230 ---SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS 286
                +     +     + +  AL           + A    R+   ++A   L+ A   
Sbjct: 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276

Query: 287 SPYLYETHYNQAVI-------------------SNLAGDLQESYNIVKKSLDLHPGHSYS 327
            P     H                           L   +  +   +KK+ + +      
Sbjct: 277 IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336

Query: 328 W----DILRKLEQY 337
                 +    +QY
Sbjct: 337 CSILASLHALADQY 350

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 28/230 (12%), Positives = 68/230 (29%), Gaps = 37/230 (16%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGV-------------NHFYNDQPE 170
           + AK +   +    +++  K  L+           IG               +    + +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311

Query: 171 V------ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 224
           +      A+   ++  +       + + LA     + QY+     F++  S  L   A  
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371

Query: 225 VWY----NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYL 280
           + +    N     +   D   AI      + I+      +     L+             
Sbjct: 372 LLHLRYGNFQLYQMKCEDK--AIHHFIEGVKINQKSREKEKMKDKLQK----------IA 419

Query: 281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH--SYSW 328
           +   + +    E  +  A +  L   +Q++    ++ L+       + SW
Sbjct: 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 35/231 (15%), Positives = 70/231 (30%), Gaps = 22/231 (9%)

Query: 112 QPDGPFIQVSR-LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 170
            PD  +++V   L L K+ E         K  +  L++     + +      +   D+P+
Sbjct: 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD 264

Query: 171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS 230
            A+   ++ L+    NA L   +  C  Y  +   V+   E  +                
Sbjct: 265 KAIELLKKALEYIPNNAYLHCQIGCC--YRAKVFQVMNLRENGMYGKRKL---------- 312

Query: 231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL 290
                +     A+  L  A   + +     + LA L A     E A  Y Q   +     
Sbjct: 313 -----LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367

Query: 291 YETHYNQAVISNLAGDLQESYN--IV--KKSLDLHPGHSYSWDILRKLEQY 337
                      N      +  +  I    + + ++        +  KL++ 
Sbjct: 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 20/164 (12%)

Query: 185 YNAELFNNLALCCFYSQQYDMVVTCFERALSL-------ALNENAADVWYNISHVAIGIS 237
           + A + N LA       Q +  + C  +A  L            +   W N + V   + 
Sbjct: 49  FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108

Query: 238 DTRLAIQCLH----------LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
                   +               I+S     +     L+      ERA    + A    
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 288 PYLYETHYNQAVISNLAGDL---QESYNIVKKSLDLHPGHSYSW 328
           P   E     A+ S    +    Q + + +++++ L+P + Y  
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 61.8 bits (150), Expect = 7e-11
 Identities = 37/253 (14%), Positives = 84/253 (33%), Gaps = 29/253 (11%)

Query: 118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIA--CIGVNHFYNDQPEVALLF 175
           + +  L   K +     +   ++  +   K+    ++  +    G+  F   +   A+ +
Sbjct: 64  LMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGY 123

Query: 176 YRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAAD 224
           YR   +   +       AE    +A   ++ +Q  + +    +AL +  N          
Sbjct: 124 YREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183

Query: 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERAST 278
             + I+           A+  L  AL +           +S  N+A    R G  + A  
Sbjct: 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243

Query: 279 YLQAAAA-----SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL-----HPGHSYSW 328
           + Q AA          L +  +  +     AG  Q+++  +++ LD      H  +   +
Sbjct: 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303

Query: 329 DILRKLEQYFSYL 341
             L+ + +     
Sbjct: 304 LFLQAVYKETVDE 316

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 17/178 (9%)

Query: 159 IGVNHFYNDQPEVALLFYRRLLQM----GLYN---AELFNNLALCCFYSQQYDMVVTCFE 211
           +   +++  Q  V++    + L +     LY+    +    +A      + YD  +   E
Sbjct: 147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLE 206

Query: 212 RALSLALNENA----ADVWYNISHVAIGISDTRLAIQCLHLALSI-----DSSHGLSQNN 262
            AL LA++       A    NI++      D ++A++    A  +               
Sbjct: 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266

Query: 263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQ-AVISNLAGDLQESYNIVKKSLD 319
           L+    + G  ++A  +++             Y +  +              +   L 
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 19/179 (10%), Positives = 57/179 (31%), Gaps = 16/179 (8%)

Query: 121 SRLNLAKIFEGLNNMPMSVKYYKLIL----KRDATCMEAIAC--IGVNHFYNDQPEVALL 174
           S   +A  ++   +   ++ + +  L            AI+   I  ++  +   ++A+ 
Sbjct: 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243

Query: 175 FYRRLLQM-----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL---NENAADVW 226
            +++  ++          ++   L+     + Q        E  L       ++   +++
Sbjct: 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303

Query: 227 YNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ--NNLAVLEAREGHIERASTYLQAA 283
             +  V     D R     L      +    +     + A +     H E+A+ + +  
Sbjct: 304 LFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 24/230 (10%), Positives = 60/230 (26%), Gaps = 12/230 (5%)

Query: 118 IQVSRLNLAKIFE-GLNNMPMSVKYYKLILKRDATCM-----EAIACIGVNHFYNDQPEV 171
           +Q+    L KI + G      +V  ++  L      +      AIA         +  + 
Sbjct: 31  LQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQR 90

Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
            L    +   +         +        +    ++    +A    L         +   
Sbjct: 91  LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPEQVVAIASHDG 148

Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291
               +   +  +  L  A  +     ++  +    +     ++R    L  A   +P   
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 208

Query: 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
               +          +Q    ++ ++  L P    +        + LE  
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETV 258

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 20/218 (9%), Positives = 54/218 (24%), Gaps = 6/218 (2%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           +     + L  +   +             + AIA  G      +  +  L    +   + 
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
                   +        +    ++    +A    L         + S     +   +  +
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNSGGKQALETVQRLL 296

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             L  A  +     ++  +    +     ++R    L  A   +P       +       
Sbjct: 297 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 356

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
              +Q    ++ ++  L P    +        + LE  
Sbjct: 357 LETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETV 394

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 18/218 (8%), Positives = 51/218 (23%), Gaps = 6/218 (2%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           +     + L  +   +             + AIA         +  +  L    +   + 
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
                   +        +    ++    +A    L         +       +   +  +
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHDGGKQALETVQRLL 364

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             L  A  +     ++  +    +     ++R    L  A   +P       +       
Sbjct: 365 PVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
              +Q    ++ ++  L P    +          LE  
Sbjct: 425 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESI 462

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 18/218 (8%), Positives = 52/218 (23%), Gaps = 6/218 (2%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           +     + L  +   +             + AIA         +  +  L    +   + 
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
                   +        +    ++    +A    L         +       +   +  +
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAH--GLTPEQVVAIASNGGGKQALETVQRLL 194

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             L  A  +     ++  +    +     ++R    L  A   +P       +       
Sbjct: 195 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQA 254

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
              +Q    ++ ++  L P    +        + LE  
Sbjct: 255 LETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETV 292

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 15/199 (7%), Positives = 46/199 (23%), Gaps = 2/199 (1%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           + +   + L  +   +             + AIA  G      +  +  L    +   + 
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
                   +        +    ++    +A    L         +       +   +  +
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPEQVVAIASNGGGKQALETVQRLL 398

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             L  A  +     ++  +    +     ++R    L  A   +P       +       
Sbjct: 399 PVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPA 458

Query: 304 AGDLQESYNIVKKSLDLHP 322
              +    +    +L    
Sbjct: 459 LESIVAQLSRPDPALAALT 477

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 57.2 bits (139), Expect = 8e-10
 Identities = 30/194 (15%), Positives = 59/194 (30%), Gaps = 18/194 (9%)

Query: 159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL 218
           +GV  +   + + AL  + R L+    + E    LA         +  +   +  +  A 
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV--AR 68

Query: 219 NENAADVWYN--ISHVAIGISDTRL---------AIQCLHLALSIDSSHGLSQNNLAVLE 267
                  +     ++VA+                A+  L  A  ++  +        ++ 
Sbjct: 69  TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVY 128

Query: 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS 327
           A  G  ++A   L+ A A      E     A +    G L E+     K+L+  P     
Sbjct: 129 ALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187

Query: 328 W----DILRKLEQY 337
                  L    + 
Sbjct: 188 RVRYASALLLKGKA 201

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 16/166 (9%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
             +    L +  +   +YD  +T FERAL    N    +  Y ++   + +     A++ 
Sbjct: 4   AEQNPLRLGVQLYALGRYDAALTLFERAL--KENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 246 LHLALSIDSSHGLSQNNLAV-----------LEAREGHIERASTYLQAAAASSPYLYETH 294
               ++    +      L+             E  +G++E+A + L+ A   +P     H
Sbjct: 62  GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121

Query: 295 YNQAVISNLAGDLQESYNIVKKSLDLHP---GHSYSWDILRKLEQY 337
             + ++  L G+  ++   +K++L L       S   ++   + + 
Sbjct: 122 LQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRL 167

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 14/211 (6%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ- 181
           L L      L     ++  ++  LK +    EA+  +            AL   + L+  
Sbjct: 9   LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68

Query: 182 ----------MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
                     +      L+             +  ++  + A    +N   A +      
Sbjct: 69  TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE--RVNPRYAPLHLQRGL 126

Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY 291
           V   + +   A   L  AL+++ +    ++ LA L    G ++ A      A   +P   
Sbjct: 127 VYALLGERDKAEASLKQALALEDTP-EIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185

Query: 292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322
           +     A    L G  +E+          H 
Sbjct: 186 DLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 15/133 (11%)

Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279
           + A      +      +     A+     AL  +     +   LA  + + G +  A   
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 280 LQAAAASSPYLYETHYN-----------QAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
            +   A +P     +                     G L+++ +++K +  ++P ++   
Sbjct: 62  GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121

Query: 329 ----DILRKLEQY 337
                +   L + 
Sbjct: 122 LQRGLVYALLGER 134

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 25/221 (11%), Positives = 64/221 (28%), Gaps = 10/221 (4%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
               +++ L    ++   +   L       E    +G+        + A   +  +L++ 
Sbjct: 48  ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA- 242
                   N  +  +Y  +  +             + N       +      + + +   
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFY--QDDPNDPFRSLWLYLAEQKLDEKQAKE 165

Query: 243 --IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI 300
              Q    +        + +  L  +   +  +ER         + + +L ET++     
Sbjct: 166 VLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKY 224

Query: 301 SNLAGDLQESYNIVKKSLDLHPG----HSYSWDILRKLEQY 337
               GDL  +  + K ++  +      H Y+   L  L Q 
Sbjct: 225 YLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 9/176 (5%)

Query: 168 QPEVALLFYRRLLQMGLY----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 223
           Q EV L    ++L          A+L     +         +    F +A  LA+  +  
Sbjct: 20  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA--LAIRPDMP 77

Query: 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
           +V+  +        +   A +     L +D ++  +  N  +     G  + A   L A 
Sbjct: 78  EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137

Query: 284 AASSPYLYETHYNQAVISNLAGDLQESYNIVK---KSLDLHPGHSYSWDILRKLEQ 336
               P          +      + Q    + +   KS     G +     L  + +
Sbjct: 138 YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 11/196 (5%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            L        N   + + +  +L+ D T   A    G+  +Y  + ++A        Q  
Sbjct: 82  YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG-ISDTRL- 241
             +      L L               ++    +  E      +NI    +G IS+  L 
Sbjct: 142 PNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWG---WNIVEFYLGNISEQTLM 197

Query: 242 --AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299
                      S+      +   L       G ++ A+   + A A++ + +  H    +
Sbjct: 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL 257

Query: 300 ISNLAGDLQE---SYN 312
             +L G  Q+     +
Sbjct: 258 ELSLLGQDQDDLAESD 273

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 28/212 (13%), Positives = 65/212 (30%), Gaps = 28/212 (13%)

Query: 158 CIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVVTCFE 211
             G+      +   A+ F+++     ++       AE F  ++   +Y +Q    +    
Sbjct: 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167

Query: 212 RALSLA-----LNENAADVWYNISHVAIGISDTRLAIQCLHLALSI------DSSHGLSQ 260
           +A  +       N          +   + +     AI     A S+          G + 
Sbjct: 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTL 227

Query: 261 NNLAVLEAREGHIERASTYLQAAAA------SSPYLYETHYNQAVISNLAGDLQESYNIV 314
            N+ + +  +   E A  Y + A A        P L + ++    I    G + +++   
Sbjct: 228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287

Query: 315 KKSLDL-----HPGHSYSWDILRKLEQYFSYL 341
            K +          +   ++ L+ L       
Sbjct: 288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 33/204 (16%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 159 IGVNHFYNDQPEVALLFYRRLLQM----GLYN---AELFNNLALCCFYSQQYDMVVTCFE 211
           +  +++Y  Q   ++ + R+  ++      YN    +  +  A      +QY+  ++ F+
Sbjct: 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQ 208

Query: 212 RALSLA--LNENA--ADVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQN 261
           +A S+A    +        YNI       S    AI     A+++        S   +  
Sbjct: 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268

Query: 262 NLAVLEAREGHIERASTYLQAAAASSPYL----YETHYNQAVISNLAGDLQESYNIVKKS 317
            +  +  + G I++A  Y     A S       Y + +       L+G  +E+       
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328

Query: 318 LDLHPGHSYSWDILRKLEQYFSYL 341
           L+    ++   D    + +Y+   
Sbjct: 329 LESKMLYADLEDFAIDVAKYYHER 352

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 55.6 bits (134), Expect = 8e-09
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 24/221 (10%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILK-------RDATCMEAIACIGVNHFYNDQPEVALLFY 176
            +++ +  +     S+ Y +   +        +   ++  +    N     Q E A+  +
Sbjct: 148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHF 207

Query: 177 RRLLQMG------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENA----ADVW 226
           ++   M               N+ LC     QY+  +  F+RA+++    N        +
Sbjct: 208 QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267

Query: 227 YNISHVAIGISDTRLAIQCLHLALSI-----DSSHGLSQNNLAVLEAREGHIERASTYLQ 281
           + I+ +   +     A +     ++      D  +      L  L       E    +  
Sbjct: 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327

Query: 282 AAAASS--PYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320
              +      L +   + A   +   + Q++     K   +
Sbjct: 328 FLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 27/182 (14%)

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIGISD 238
           GL          +     ++Y   +  F++A S  +        A+ ++ +S     +  
Sbjct: 99  GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ 158

Query: 239 TRLAIQCLHLALSIDSSHG-------LSQNNLAVLEAREGHIERASTYLQAA------AA 285
           T  ++     A  I   H           +  A         E A ++ Q A        
Sbjct: 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218

Query: 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL------HPGHSYSW----DILRKLE 335
               +  T YN  +  N     +++    K+++ +       P    ++     I  KL 
Sbjct: 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG 278

Query: 336 QY 337
           + 
Sbjct: 279 KI 280

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 19/97 (19%), Positives = 26/97 (26%), Gaps = 2/97 (2%)

Query: 192 NLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS 251
              L              FE            + W ++           LAI  L+ A  
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79

Query: 252 IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP 288
           +D         LAV    E +   A   L+A   S P
Sbjct: 80  LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 11/115 (9%), Positives = 39/115 (33%), Gaps = 3/115 (2%)

Query: 112 QPDGPFIQV-SRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPE 170
           + + P++   + +        L N+  +   ++ + +++    EA   +G+    N++  
Sbjct: 9   EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68

Query: 171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADV 225
           +A++       +   +  +   LA+        +  +        L        +
Sbjct: 69  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW--LLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 46.7 bits (111), Expect = 7e-07
 Identities = 12/100 (12%), Positives = 26/100 (26%)

Query: 226 WYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA 285
                   + +++   A          +     +  +L + +A       A   L  A  
Sbjct: 20  PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79

Query: 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS 325
             P     H   AV      +   +   ++  L   P + 
Sbjct: 80  LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 22/208 (10%)

Query: 113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYN 166
           P G    +S         GL +       +    ++       ++    +A  G      
Sbjct: 2   PLGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNA 61

Query: 167 DQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN--- 219
                 + F++  +Q G  +    + +++ L    FY   Y+  +   +  L+LA +   
Sbjct: 62  GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121

Query: 220 -ENAADVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQNNLAVLEAREGH 272
               A    N+ +    +     A  C    L++        S G +  NL  +   +G 
Sbjct: 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181

Query: 273 IERASTYLQAAAASSPYLYE--THYNQA 298
                   +        L      Y + 
Sbjct: 182 HLGQRNPGKFGDDVKEALTRAVEFYQEN 209

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 18/148 (12%)

Query: 154 EAIAC--IGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDM 205
           +  AC  +G  ++     + A+  ++  L++     +        +NL     +  Q++ 
Sbjct: 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281

Query: 206 VVTCFERALSLA--LNENA--ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---- 257
               ++R L+LA  L E    A   Y++ +    + +   AI+  +  L+I    G    
Sbjct: 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341

Query: 258 --LSQNNLAVLEAREGHIERASTYLQAA 283
              +  +L    +  G  ERA  Y +  
Sbjct: 342 EARACWSLGNAHSAIGGHERALKYAEQH 369

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIA--CIGVNHFYNDQPEVALLFYR 177
           NL   +  L +   ++++++  L + R+      E  A   +G +H +  Q E A   Y+
Sbjct: 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287

Query: 178 RLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWY 227
           R L +   L      A+   +L        +++  +    R L++A         A   +
Sbjct: 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347

Query: 228 NISHVAIGISDTRLAIQCLHLALSI 252
           ++ +    I     A++     L +
Sbjct: 348 SLGNAHSAIGGHERALKYAEQHLQL 372

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 23/177 (12%)

Query: 182 MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL 241
           M L  A    N  +     + +   +  F       + +  + + +NI  +   + +   
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSA-----VQDPHSRICFNIGCMYTILKNMTE 55

Query: 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA----------------STYLQAAAA 285
           A +    +++ D    ++     +L  +    + A                  Y      
Sbjct: 56  AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115

Query: 286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP--GHSYSWDILRKLEQYFSY 340
              +  E  YN A +     + +++   +  +  +     HS     +  + +   Y
Sbjct: 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 172

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 17/156 (10%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           N   +     +   ++  +  +    +        IG  +        A   + R +   
Sbjct: 11  NEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALS--------------LALNENAADVWYNI 229
            + A  +    +  + +++YD+ +   + AL               L     A +V YNI
Sbjct: 68  KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127

Query: 230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV 265
           + +     + + A + L LA S+ S    S+ + A+
Sbjct: 128 AFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 163

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCL 246
           AE + NL    +    YD  +  +++AL L  +  +A+ WYN+ +      D   AI+  
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYY 58

Query: 247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD 306
             AL +D     +  NL     ++G  + A  Y Q A    P   E  YN        GD
Sbjct: 59  QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118

Query: 307 LQESYNIVKKSLDLHP 322
             E+    +K+L+L P
Sbjct: 119 YDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.2 bits (98), Expect = 6e-05
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQA 282
           A+ WYN+ +      D   AI+    AL +D     +  NL     ++G  + A  Y Q 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 283 AAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
           A    P   E  YN        GD  E+    +K+L+L P  + +W    +   K   Y
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 16/205 (7%), Positives = 50/205 (24%), Gaps = 2/205 (0%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           +     + L  +   +             + AIA         +  +  L    +   + 
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP 256

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
                   +        +    ++    +A    L  +      +       +   +  +
Sbjct: 257 PDQVVAIASNIGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASHGGGKQALETVQRLL 314

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             L  A  +     ++  +    +     ++R    L  A   +P       +       
Sbjct: 315 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 374

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW 328
              +Q    ++ ++  L P    + 
Sbjct: 375 LETVQRLLPVLCQAHGLTPDQVVAI 399

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 16/188 (8%), Positives = 45/188 (23%), Gaps = 6/188 (3%)

Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
            AIA         +  +  L    +   +         +             ++    +A
Sbjct: 464 VAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQA 523

Query: 214 LSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273
               L  +      +       +   +  +  L  A  +     ++  +    +     +
Sbjct: 524 H--GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 581

Query: 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----D 329
           +R    L  A   +        +          +Q    ++ ++  L P    +      
Sbjct: 582 QRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 641

Query: 330 ILRKLEQY 337
             + LE  
Sbjct: 642 GKQALETV 649

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 5e-07
 Identities = 19/218 (8%), Positives = 54/218 (24%), Gaps = 6/218 (2%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           +     + L  +   +             + AIA            +  L    +   + 
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLT 527

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
                   +        +    ++    +A  L  ++  A    +       +   +  +
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA--IASNGGGKQALETVQRLL 585

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             L  A  +     ++  +    +     ++R    L  A   +P       +       
Sbjct: 586 PVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 645

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
              +Q    ++ ++  L P    +        + LE  
Sbjct: 646 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 683

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 18/218 (8%), Positives = 51/218 (23%), Gaps = 7/218 (3%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
           +     + L  +   +             + AIA  G         +  L    +   + 
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALE-TVQRLLPVLCQAHGLT 425

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
                   +        +    ++    +     L         +       +   +  +
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTH--GLTPAQVVAIASHDGGKQALETVQQLL 483

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
             L  A  +     ++  +    +     ++R    L  A   +P       +       
Sbjct: 484 PVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 543

Query: 304 AGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQY 337
              +Q    ++ ++  L P    +        + LE  
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 581

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 18/188 (9%), Positives = 48/188 (25%), Gaps = 7/188 (3%)

Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
            AIA         +  +  L    +   +         +        +    ++    +A
Sbjct: 261 VAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQA 320

Query: 214 LSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273
               L  +      +       +   +  +  L  A  +     ++  +    +     +
Sbjct: 321 H--GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 378

Query: 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWD---- 329
           +R    L  A   +P       +      L   +Q    ++ ++  L P    +      
Sbjct: 379 QRLLPVLCQAHGLTPDQVVAIASNGGKQAL-ETVQRLLPVLCQAHGLTPDQVVAIASHDG 437

Query: 330 ILRKLEQY 337
             + LE  
Sbjct: 438 GKQALETV 445

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 9e-06
 Identities = 17/188 (9%), Positives = 48/188 (25%), Gaps = 6/188 (3%)

Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
            AIA  G      +  +  L    +   +         +        +    ++    +A
Sbjct: 532 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 591

Query: 214 LSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273
               L +       +       +   +  +  L  A  +  +  ++  +    +     +
Sbjct: 592 H--GLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETV 649

Query: 274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----D 329
           +R    L  A   +P       +          +Q    ++ ++  L      +      
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNG 709

Query: 330 ILRKLEQY 337
             + LE  
Sbjct: 710 GKQALETV 717

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 13/169 (7%), Positives = 42/169 (24%), Gaps = 2/169 (1%)

Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
             +  L    +   +         +        +    ++    +A    L  +      
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPDQVVAIA 671

Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
           +       +   +  +  L  A  +     ++  +    +     ++R    L  A   +
Sbjct: 672 SNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 731

Query: 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
           P       +          +Q    ++ ++  L P    +       +Q
Sbjct: 732 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ 780

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY 227
            PE  L   +  ++    N+E +  L     +   Y   +  + +AL   L    A+++ 
Sbjct: 25  NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL--QLRGENAELYA 82

Query: 228 NISHV---AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA 284
            ++ V         T      +  AL++DS+   +   LA     + +  +A    Q   
Sbjct: 83  ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142

Query: 285 ASSP 288
             + 
Sbjct: 143 DLNS 146

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 12/154 (7%)

Query: 133 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN 192
            N    ++  +  ++ +    E  A +G  + + +    +LL YR+ LQ+   NAEL+  
Sbjct: 24  QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83

Query: 193 LALCCFYSQQYDM---VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA 249
           LA   +Y     M        ++A  LAL+ N       ++  A   ++   AI+     
Sbjct: 84  LATVLYYQASQHMTAQTRAMIDKA--LALDSNEITALMLLASDAFMQANYAQAIELWQKV 141

Query: 250 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
           + ++S      N   ++E+    I  A    + +
Sbjct: 142 MDLNSPR---INRTQLVES----INMAKLLQRRS 168

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 17/151 (11%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAIGISDTRLA 242
           A  +   A+    ++Q +     + +      N     +AA  +     +   +     A
Sbjct: 36  ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95

Query: 243 IQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAA------SSPYL 290
           +Q +  A  +   +G      ++ +    L      + +A    Q AAA           
Sbjct: 96  VQYIEKASVMYVENGTPDTAAMALDRAGKL-MEPLDLSKAVHLYQQAAAVFENEERLRQA 154

Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDLH 321
            E     + +        E+   ++K   ++
Sbjct: 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMY 185

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 18/176 (10%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLIL----KRDATCMEAIACIGVNHFYNDQ-PEVALLFYRR 178
               + + L  MP +V+Y +       +       A+A               A+  Y++
Sbjct: 81  QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQ 140

Query: 179 LLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYN 228
              +          AEL    +      Q++D      ++  S+                
Sbjct: 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200

Query: 229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA--VLEA-REGHIERASTYLQ 281
              V +  +D   A +C+  + SI    G         +L+A  E   E+     +
Sbjct: 201 QVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 17/150 (11%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAIGISDTRLA 242
           A+ F    +     Q+    V   E+A  + +     + AA        + +   D   A
Sbjct: 76  AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL-MEPLDLSKA 134

Query: 243 IQCLHLALS----IDSSHGLSQ--NNLAVLEAREGHIERASTYLQAAAASS------PYL 290
           +     A +     +     ++     + L  R+   + A+  LQ   +        P  
Sbjct: 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194

Query: 291 YETHYNQAVISNLAGDLQESYNIVKKSLDL 320
           Y+    Q ++     D   +   V++S  +
Sbjct: 195 YKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 23/197 (11%), Positives = 60/197 (30%), Gaps = 31/197 (15%)

Query: 154 EAIAC--IGVNHFYNDQPEVALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDM 205
           +  A   +G  H+       A++ + + L +     +       ++NL     +  +++ 
Sbjct: 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245

Query: 206 VVTCFERALSLALN----ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---- 257
               +++ L LA         A   Y++ +    + D   AI      L+I         
Sbjct: 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305

Query: 258 --LSQNNLAVLEAREGHIERASTYLQAA-------------AASSPYLYETHYNQAVISN 302
              +  +L       G+ ++A  + +                 +   L +      +  +
Sbjct: 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365

Query: 303 LAGDLQESYNIVKKSLD 319
               +      +  SL+
Sbjct: 366 TNNSIMSENTEIDSSLN 382

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 31/208 (14%), Positives = 62/208 (29%), Gaps = 27/208 (12%)

Query: 148 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQY 203
            +A+C+  +A  G     +      + F+   +Q+G  +    + +++ L    FY   Y
Sbjct: 5   MEASCL-ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63

Query: 204 DMVVTCFERALSLAL----NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG-- 257
              +      L+LA         A    N+ +    + +   AI C    L I       
Sbjct: 64  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 123

Query: 258 ----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNI 313
                +  NL  +   +G                P         AV        +E+ ++
Sbjct: 124 VGEARALYNLGNVYHAKGKSFGCPGPQD--VGEFPEEVRDALQAAVDF-----YEENLSL 176

Query: 314 VKKSLDLHPGHSYSW----DILRKLEQY 337
           V    D       ++    +    L  +
Sbjct: 177 VTALGD-RAAQGRAFGNLGNTHYLLGNF 203

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 29/185 (15%), Positives = 66/185 (35%), Gaps = 23/185 (12%)

Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIA--CIGVNHFYNDQPEVALLFYR 177
           NL      L N   +V  ++  L++ ++      E  A   +G  + +  + E A  +Y+
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251

Query: 178 RLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALNENA----ADVWY 227
           + L +   L +    A+   +L       Q Y+  +    + L++A   N         +
Sbjct: 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW 311

Query: 228 NISHVAIGISDTRLAIQCLHLALSI------DSSHGLSQNNLAVLEAREGHI-ERASTYL 280
           ++ +    + +   A+      L I       S    ++ NL+ L+   G      ++ +
Sbjct: 312 SLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371

Query: 281 QAAAA 285
                
Sbjct: 372 SENTE 376

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 22/176 (12%)

Query: 167 DQPEVALLFYRRLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLA--L 218
           D  + A+ FY   L +   L +       F NL    +    +   V   E+ L +A   
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220

Query: 219 NENA--ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEARE 270
            + A     + N+ +  I + +   A +     L +            S  +L       
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280

Query: 271 GHIERASTYLQAAAA------SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320
              E+A  Y     A               ++        G+  ++ +  +K L++
Sbjct: 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 27/206 (13%)

Query: 150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLALCCFYSQQYDM 205
           A+C+  +A  G     +      + F+   +Q+G  +    + +++ L    FY   Y  
Sbjct: 3   ASCL-ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 61

Query: 206 VVTCFERALSLAL----NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---- 257
            +      L+LA         A    N+ +    + +   AI C    L I         
Sbjct: 62  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121

Query: 258 --LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVK 315
              +  NL  +   +G                P         AV        +E+ ++V 
Sbjct: 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEF--PEDVRNALQAAVDL-----YEENLSLVT 174

Query: 316 KSLDLHPGHSYSW----DILRKLEQY 337
              D       ++    +    L  +
Sbjct: 175 ALGD-RAAQGRAFGNLGNTHYLLGNF 199

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 19/141 (13%), Positives = 48/141 (34%), Gaps = 16/141 (11%)

Query: 159 IGVNHFYNDQPEVALLFYRRLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFER 212
           +G  H+       A++ + + L +     +       ++NL     +  +++     +++
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 213 ALSLALN----ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------LSQNN 262
            L LA         A   Y++ +    + D   AI      L+I            +  +
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308

Query: 263 LAVLEAREGHIERASTYLQAA 283
           L       G+ ++A  + +  
Sbjct: 309 LGNAYTALGNHDQAMHFAEKH 329

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 16/145 (11%)

Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDATCMEAIAC----IGVNHFYNDQPEVALLFYR 177
           NL      L N   +V  ++  L++ ++     A       +G  + +  + E A  +Y+
Sbjct: 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247

Query: 178 RLLQMG--LYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWY 227
           + L +   L +    A+   +L       Q Y+  +    + L++A             +
Sbjct: 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 307

Query: 228 NISHVAIGISDTRLAIQCLHLALSI 252
           ++ +    + +   A+      L I
Sbjct: 308 SLGNAYTALGNHDQAMHFAEKHLEI 332

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 4/100 (4%)

Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
                  +L  G  N  L   L       +Q+D  +     A  L  +   +  W  +  
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAA--LDFDPTYSVAWKWLGK 61

Query: 232 VAIGISDTRLAIQCLHLALSIDSSHGLSQ--NNLAVLEAR 269
              G  D   A Q     L+   S G  Q    L V   R
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRR 101

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/83 (15%), Positives = 23/83 (27%)

Query: 242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS 301
             + L   L+  + + L +  L    A     + A  +L+AA    P             
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 302 NLAGDLQESYNIVKKSLDLHPGH 324
              GD   +    +  L      
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSR 86

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 46.2 bits (109), Expect = 7e-06
 Identities = 33/283 (11%), Positives = 86/283 (30%), Gaps = 17/283 (6%)

Query: 72  ASRGGTLEQSLKTPRTAKSARPLTSQAARTIRLGTASMLSQPDGPFIQVSRLNLA----- 126
           A++GG   Q  + P       P              ++ S  D  F+ +   +       
Sbjct: 10  AAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVLYRDR 69

Query: 127 KIFEGLNNMPMSVKYYKL--ILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL 184
             +  ++ +P +     +  I+  D    +           +++ E A    R  +++  
Sbjct: 70  AEWADIDPVPQNDGPNPVVQIIYSDKFR-DVYDYFRAVLQRDERSERAFKLTRDAIELNA 128

Query: 185 YNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
            N  +++   +     Q+     +      +          VW++   +   + D    +
Sbjct: 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQEL 186

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET-HYNQAVISN 302
           + +   L+ D+ +  +  +   +       +    Y+              +    VISN
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246

Query: 303 L-----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340
                    L+       + + L P +  +W+ L+ + Q    
Sbjct: 247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL 289

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 14/156 (8%), Positives = 39/156 (25%), Gaps = 25/156 (16%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLAL----NENAADVWYNISHVAIGISDTRLA 242
           +     L     +  ++D     F+     A     +       + +  V     +   A
Sbjct: 26  SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85

Query: 243 IQCLHLALSI-----DSSHGLSQ--NNLAVLEAREGHIERASTYLQAAAASSPYLYE--- 292
            +C      +     +     S     +A +    G +  A    + +        +   
Sbjct: 86  RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV----YAQQAD 141

Query: 293 -------THYNQAVISNLAGDLQESYNIVKKSLDLH 321
                         ++    +L E+     ++ D+ 
Sbjct: 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 17/164 (10%)

Query: 159 IGVNHFYNDQPEVALLFYRRLLQM------GLYNAELFNNLALCCFYSQQYDMVVTCFER 212
           +G  + + D+ + A   ++ L Q               + + +    +  +D    CF  
Sbjct: 32  LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91

Query: 213 ALSLA-----LNENAADVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQN 261
              L          A+   Y ++ VA+   D   A Q    +L          +   +  
Sbjct: 92  ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151

Query: 262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG 305
            L  L  +E ++  A  +   A      L ++     +++ L G
Sbjct: 152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNG 195

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 10/85 (11%), Positives = 33/85 (38%)

Query: 172 ALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH 231
           ++  + + +Q+    ++ +       +  ++Y+  V C+   +++  +E   DVW   + 
Sbjct: 25  SIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84

Query: 232 VAIGISDTRLAIQCLHLALSIDSSH 256
               I    +  +       ++  H
Sbjct: 85  ALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 14/98 (14%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL---- 241
           N E +    +  + +  Y   +  FE+A+   L+   +  W        G +   L    
Sbjct: 5   NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLM-----KGKALYNLERYE 57

Query: 242 -AIQCLHLALSI--DSSHGLSQNNLAVLEAREGHIERA 276
            A+ C +  +++  D  +       A         E  
Sbjct: 58  EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVE 95

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 124 NLAKIFEGLNNMPMSVKYYK--LILKRDA--TCMEAIAC--IGVNHFYNDQPEVALLFYR 177
           NL      L N   +V  ++  L++ ++      E IA   +G  + +  + E A  +Y+
Sbjct: 14  NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73

Query: 178 RLLQM--GLYN----AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWY 227
           + L +   L +    A+   +L       Q Y+  +    + L++A             +
Sbjct: 74  KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 133

Query: 228 NISHVAIGISDTRLAIQCLHLALSI 252
           ++ +    + +   A+      L I
Sbjct: 134 SLGNAYTALGNHDQAMHFAEKHLEI 158

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 18/151 (11%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENA--ADVWYNISHVAIGISDTRLA 242
              F NL    +    +   V   E+ L +A    + A     + N+ +  I + +   A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 243 IQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 296
            +     L +            S  +L          E+A  Y     A +  L +    
Sbjct: 69  SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIG 127

Query: 297 QA-VISNLA------GDLQESYNIVKKSLDL 320
           +     +L       G+  ++ +  +K L++
Sbjct: 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 22/158 (13%), Positives = 57/158 (36%), Gaps = 18/158 (11%)

Query: 129 FEG-LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRR----LLQMG 183
           +E  L +   + + +++  K        +   G  +F   +   A++ Y +    L    
Sbjct: 243 YEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY 302

Query: 184 LYNAE-----------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV 232
             + +            F NLA+C    ++Y   V C ++A  L L+       Y     
Sbjct: 303 GLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA--LGLDSANEKGLYRRGEA 360

Query: 233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270
            + +++   A       L ++  +  ++  +++ + + 
Sbjct: 361 QLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 3/110 (2%)

Query: 202 QYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ 260
                V  +E+A++  L   + A+ +  +      + + R A   L   +    +H   +
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 261 NNLAVLEAREGHIERA-STYLQAAAASSPYLYETHYNQAVISNLAGDLQE 309
              A++    G  E+     L+  A +S       Y QA I   A  L E
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA-ILFYADKLDE 113

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 168 QPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAAD 224
               A+ +Y + +  GL     AE +  L        +Y          +    N  A  
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSH 256
           V+Y +    +G       ++ L   ++  S  
Sbjct: 65  VFYAMVLYNLG--RYEQGVELLLKIIAETSDD 94

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 25/161 (15%), Positives = 49/161 (30%), Gaps = 18/161 (11%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIG-ISDTRL 241
              +     C          V   E A+ +  +       A+  + +  +    + D   
Sbjct: 77  GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAK 136

Query: 242 AIQCLHLALS----IDSSHGLSQ--NNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
           AI C  LA        S    ++     A L+A +G    AS        SS     + +
Sbjct: 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196

Query: 296 N------QAVISNLA-GDLQESYNIVKKSLDLHPGHSYSWD 329
           +      +  +  LA  D   +   +++     P  + S +
Sbjct: 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 17/150 (11%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNEN----AADVWYNISHVAIGISDTRLA 242
           A+L    A      ++ ++    F +A            A + +           ++  A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 243 IQCLHLALSIDSSHGL------SQNNLA-VLEAREGHIERASTYLQAAAA------SSPY 289
           +  L  A+ I +  G        +  L  +LE       +A    + A        S   
Sbjct: 97  VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 290 LYETHYNQAVISNLAGDLQESYNIVKKSLD 319
             +     A +  L G   E+ +I  K + 
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIK 186

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAE---------------LFNNLALCCFYSQQYD 204
           G  +F   + + ALL Y++++    Y +                   NLA+C    Q + 
Sbjct: 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213

Query: 205 MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA 264
             +    +A  L L+ N            + ++D  LA       L +  ++  ++  LA
Sbjct: 214 AAIESCNKA--LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271

Query: 265 VLEAR 269
           V + R
Sbjct: 272 VCQQR 276

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 4/93 (4%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
           +      LA            +  FE  +    + +    +Y++  +   +  T  AI  
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 246 LHLALSIDSSHGLSQ--NNLAVLEAREGHIERA 276
               + +    G  +  + L   + +   +E  
Sbjct: 64  YAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)

Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
           G      +  E A+ FY + +++   NA  F N A        Y   V   ERA+   ++
Sbjct: 19  GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--ID 76

Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
              +  +  +      ++    A+     AL +D  +   ++NL + E +
Sbjct: 77  PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 217 ALN-ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER 275
           A++  N+A+ WYN+ +      D   AI+    AL +D ++  +  NL     ++G  + 
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE---SYNIVKKSLDLHPGHSYSW 328
           A  Y Q A    P   E  YN        GD  E    Y    K+L+L P ++ + 
Sbjct: 62  AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ---KALELDPNNAEAK 114

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
           +AE + NL    +    YD  +  +++AL   L+ N A+ WYN+ +      D   AI+ 
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYN 296
              AL +D ++  +  NL     ++G  + A  Y Q A    P   E   N
Sbjct: 66  YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 19/155 (12%), Positives = 37/155 (23%), Gaps = 19/155 (12%)

Query: 133 NNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ-------MGLY 185
           +          + ++      +     G + F  ++ E A+  Y   +          LY
Sbjct: 159 DETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218

Query: 186 NAE----------LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
                           N+A C    ++YD  +        L   E      +        
Sbjct: 219 GKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV--LTEEEKNPKALFRRGKAKAE 276

Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270
           +     A      A          +  L  L  +E
Sbjct: 277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	100.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.97
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.97
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.96
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.95
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.95
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.95
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.95
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.95
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.95
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.94
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.93
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.93
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.93
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.93
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.92
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.92
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.92
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.92
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.92
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.91
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.9
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.9
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.9
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.9
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.9
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.89
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.89
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.89
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.89
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.88
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.88
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.87
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.87
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.86
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.86
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.86
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.85
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.85
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.85
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.84
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.83
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.83
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.81
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.8
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.8
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.79
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.78
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.78
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.78
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.78
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.78
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.78
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.77
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.77
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.76
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.76
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.76
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.75
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.75
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.74
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.74
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.74
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.74
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.74
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.74
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.73
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.72
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.72
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.72
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.72
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.72
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.71
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.71
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.71
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.7
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.69
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.69
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.69
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.68
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.67
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.67
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.67
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.66
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.66
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.65
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.65
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.65
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.64
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.64
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.63
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.63
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.62
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.62
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.62
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.62
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.61
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.61
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.61
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.6
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.6
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.59
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.58
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.57
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.55
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.54
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.49
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.42
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.42
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.39
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.36
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.31
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.3
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.3
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.3
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.29
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.28
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.24
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.16
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.14
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.09
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.06
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.99
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.97
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.97
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.95
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.94
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.92
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.91
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.86
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.85
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.84
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.84
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.81
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.66
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.47
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.35
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.31
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.13
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.11
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.02
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.0
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.77
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.49
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.39
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.38
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.32
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.3
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.12
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.94
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.86
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.83
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.69
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.67
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.65
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.56
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.56
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.47
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.42
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.4
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	96.38
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.04
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.02
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.91
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.85
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.81
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.63
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.68
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.02
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.51
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.67
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.34
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	87.82
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.97
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.06
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	84.15
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	83.27
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	82.93
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.79
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	81.3

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=1.6e-31  Score=215.54  Aligned_cols=201  Identities=14%  Similarity=0.072  Sum_probs=179.9

Q ss_pred             CCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHH
Q psy16588        113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN  192 (341)
Q Consensus       113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  192 (341)
                      |.++   ..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.
T Consensus         2 p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAE---QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV   78 (217)
T ss_dssp             --CC---HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            4455   7789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc-----------CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16588        193 LALCCFYS-----------QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQN  261 (341)
Q Consensus       193 la~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  261 (341)
                      +|.++...           |++++|+..|+++++++|++  ..++..+|.++...|++++|+..|+++++++ +++.++.
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~  155 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence            99999999           99999999999999999999  9999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ++|.++...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++..
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999998753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=2.1e-30  Score=225.23  Aligned_cols=217  Identities=10%  Similarity=0.011  Sum_probs=207.0

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ-PEVALLFYRRLLQMGLYNAELFNNLALCC  197 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~  197 (341)
                      ..++..+|.++...|++++|+..|++++..+|++..+|+.+|.++..+|+ +++|+.+|++++.++|++..+|+++|.++
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            38899999999999999999999999999999999999999999999997 99999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCCHHHH
Q psy16588        198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR-EGHIERA  276 (341)
Q Consensus       198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A  276 (341)
                      ...|++++|+.+|++++.++|++  ..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.++.. .|.+++|
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~--~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKN--YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHccCHHHHHHHHHHHHHhCccC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence            99999999999999999999999  99999999999999999999999999999999999999999999999 5665788


Q ss_pred             -----HHHHHHHHHhCCCchhHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        277 -----STYLQAAAASSPYLYETHYNQAVISNLAG--DLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       277 -----~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                           +.+|++++.++|++..+|++++.++...|  ++++|+..++++ +.+|++..++..++.+...+
T Consensus       255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~  322 (382)
T 2h6f_A          255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM  322 (382)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence                 59999999999999999999999999988  699999999998 99999999988888776554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=9.5e-30  Score=223.28  Aligned_cols=226  Identities=21%  Similarity=0.282  Sum_probs=214.9

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  188 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  188 (341)
                      +...|++.   ..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++..
T Consensus       162 l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (388)
T 1w3b_A          162 IETQPNFA---VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV  238 (388)
T ss_dssp             HHHCTTCH---HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence            34456665   789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA  268 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  268 (341)
                      ++..+|.++...|++++|+..|+++++.+|.+  +.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        269 REGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       269 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      ..|++++|+..|+++++..|++..++..+|.++...|++++|+.+|+++++++|++..++..++.+...++
T Consensus       317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999999999999999999999998876543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=6e-29  Score=218.19  Aligned_cols=258  Identities=20%  Similarity=0.225  Sum_probs=217.5

Q ss_pred             CCCchHhhhcccccccccCCccchhHhhhhhh----------------hhhcccCCCCCchhHhhhcHHHHHHHcCCchH
Q psy16588         74 RGGTLEQSLKTPRTAKSARPLTSQAARTIRLG----------------TASMLSQPDGPFIQVSRLNLAKIFEGLNNMPM  137 (341)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  137 (341)
                      ..|.+++|+..++++....|....  ....++                ..++...|++.   ..+..+|.++...|++++
T Consensus        79 ~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~  153 (388)
T 1w3b_A           79 ERGQLQEAIEHYRHALRLKPDFID--GYINLAAALVAAGDMEGAVQAYVSALQYNPDLY---CVRSDLGNLLKALGRLEE  153 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT---HHHHHHHHHHHTTSCHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCcchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHccCHHH
Confidence            445667777776665444443321  111111                12334466666   678888899999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16588        138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA  217 (341)
Q Consensus       138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  217 (341)
                      |+..|++++..+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+
T Consensus       154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  233 (388)
T 1w3b_A          154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS  233 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHH
Q psy16588        218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQ  297 (341)
Q Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  297 (341)
                      |++  ..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|.+..++..+
T Consensus       234 p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  311 (388)
T 1w3b_A          234 PNH--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL  311 (388)
T ss_dssp             TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence            988  899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        298 AVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       298 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      +.++...|++++|+..|++++++.|++..++..++.+....
T Consensus       312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  352 (388)
T 1w3b_A          312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            99999999999999999999999999988888888776543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=3.6e-29  Score=217.74  Aligned_cols=219  Identities=15%  Similarity=0.105  Sum_probs=196.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..++.+|..+...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+.+|++++..+|++..++..+|.+|..
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN  145 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHH----------HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWY----------NISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNNLAVLE  267 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~----------~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~  267 (341)
                      .|++++|+.+|++++++.|..  ...+.          .+|.++...|++++|+.+|+++++.+|.  ++.++..+|.++
T Consensus       146 ~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQNPKY--KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHH--HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCccc--hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            999999999999999998887  54444          4488999999999999999999999998  889999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY  340 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  340 (341)
                      ...|++++|+..|+++++.+|++..+|..+|.++...|++++|+.+|+++++++|++..++..++.+....+.
T Consensus       224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA  296 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999888888766543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.97  E-value=4e-29  Score=204.62  Aligned_cols=216  Identities=15%  Similarity=0.244  Sum_probs=191.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++..
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV  103 (243)
T ss_dssp             ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|++++|+.+++++++..|.+  ..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..
T Consensus       104 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAGMEN--GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      |++++...|++..++..+|.++...|++++|+.+|+++++++|++..++..+..+...
T Consensus       182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999988877654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.97  E-value=7.4e-29  Score=199.92  Aligned_cols=186  Identities=15%  Similarity=0.050  Sum_probs=178.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHH
Q psy16588        150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  229 (341)
Q Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l  229 (341)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++  ..+++.+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY--LGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16588        230 SHVAIGI-----------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       230 a~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  298 (341)
                      |.++...           |++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++ +++.++.++|
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la  158 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence            9999999           999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        299 VISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       299 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      .++...|++++|+..|+++++++|++..++..++.+....
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~  198 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLK  198 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999888876443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.3e-28  Score=209.14  Aligned_cols=257  Identities=16%  Similarity=0.119  Sum_probs=226.0

Q ss_pred             CCCchHhhhcccccccccCCccchh-----Hhhhhhh---------hhhcccCCCCCchhHhhhcHHHHHHHcC-CchHH
Q psy16588         74 RGGTLEQSLKTPRTAKSARPLTSQA-----ARTIRLG---------TASMLSQPDGPFIQVSRLNLAKIFEGLN-NMPMS  138 (341)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A  138 (341)
                      ..|.+++|+..++......|.....     ......|         ..++...|.++   ..+..+|.++...| ++++|
T Consensus        34 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A  110 (330)
T 3hym_B           34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP---VSWFAVGCYYLMVGHKNEHA  110 (330)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST---HHHHHHHHHHHHSCSCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHHhhhhHHHH
Confidence            3467777877766644443333211     1111111         23345677777   78999999999999 99999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcc
Q psy16588        139 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL  218 (341)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  218 (341)
                      +.+|++++..+|++..++..+|.++...|++++|+..|++++...|.+...+..+|.++...|++++|+.++++++...|
T Consensus       111 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  190 (330)
T 3hym_B          111 RRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP  190 (330)
T ss_dssp             HHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSID---------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                      .+  ..++..+|.++...|++++|+..++++++..         |....++..+|.++...|++++|+.+|+++++++|+
T Consensus       191 ~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          191 ED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            99  9999999999999999999999999999986         667889999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        290 LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      +..++..+|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988865

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=3.3e-29  Score=217.96  Aligned_cols=226  Identities=15%  Similarity=0.105  Sum_probs=202.6

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE  188 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  188 (341)
                      +...|.++   ..+..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+++++..|.+..
T Consensus        92 l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  168 (365)
T 4eqf_A           92 ILQDPGDA---EAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY  168 (365)
T ss_dssp             HHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHC
T ss_pred             HHhCcCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchH
Confidence            34456665   789999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             HHHHH----------HHHHHHcCChhHHHHHHHHHHhhccc--cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16588        189 LFNNL----------ALCCFYSQQYDMVVTCFERALSLALN--ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH  256 (341)
Q Consensus       189 ~~~~l----------a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  256 (341)
                      .+..+          |.++...|++++|+.+|++++...|.  +  ..++..+|.++...|++++|+..|+++++.+|++
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  246 (365)
T 4eqf_A          169 LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID--PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED  246 (365)
T ss_dssp             C-------------------CCHHHHHHHHHHHHHHHHSCSSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            66554          99999999999999999999999999  7  9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH------------  324 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------  324 (341)
                      ..++..+|.++...|++++|+..|+++++++|++..++.++|.+|...|++++|+.+|++++++.|++            
T Consensus       247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  326 (365)
T 4eqf_A          247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS  326 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999998873            


Q ss_pred             HHHHHHHHHHHHHhh
Q psy16588        325 SYSWDILRKLEQYFS  339 (341)
Q Consensus       325 ~~~~~~l~~~~~~~~  339 (341)
                      ..+|..++.+...++
T Consensus       327 ~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          327 GNIWAALRIALSLMD  341 (365)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcC
Confidence            566777777665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-28  Score=201.78  Aligned_cols=212  Identities=9%  Similarity=0.027  Sum_probs=201.2

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-------HHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-------AELFNN  192 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~  192 (341)
                      ..+..+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+.+|++++...|.+       ..++..
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            678889999999999999999999999999 899999999999999999999999999999988876       789999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHh--------------------------hccccchHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16588        193 LALCCFYSQQYDMVVTCFERALS--------------------------LALNENAADVWYNISHVAIGISDTRLAIQCL  246 (341)
Q Consensus       193 la~~~~~~~~~~~A~~~~~~al~--------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  246 (341)
                      +|.++...|++++|+.+|++++.                          .+|..  ..++..+|.++...|++++|+..|
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~  162 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGKEYFTKSDWPNAVKAY  162 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999                          56666  889999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Q psy16588        247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLH-----  321 (341)
Q Consensus       247 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----  321 (341)
                      +++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++     
T Consensus       163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  242 (258)
T 3uq3_A          163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN  242 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             -CCCHHHHHHHHHH
Q psy16588        322 -PGHSYSWDILRKL  334 (341)
Q Consensus       322 -p~~~~~~~~l~~~  334 (341)
                       |++..++..+..+
T Consensus       243 ~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          243 GSSAREIDQLYYKA  256 (258)
T ss_dssp             TTTHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHh
Confidence             9988888777654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=7.5e-28  Score=209.38  Aligned_cols=220  Identities=18%  Similarity=0.175  Sum_probs=180.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++..
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  144 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN  144 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            44666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCChhHHHHHHHHHHhhcccc-------------------------------------------------chHHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNE-------------------------------------------------NAADVWYNIS  230 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~-------------------------------------------------~~~~~~~~la  230 (341)
                      .|++++|+..|++++...|..                                                 ....++..+|
T Consensus       145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~  224 (368)
T 1fch_A          145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  224 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence            777776666666666554432                                                 0278889999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16588        231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES  310 (341)
Q Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  310 (341)
                      .++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|
T Consensus       225 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA  304 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCC-----------HHHHHHHHHHHHHhh
Q psy16588        311 YNIVKKSLDLHPGH-----------SYSWDILRKLEQYFS  339 (341)
Q Consensus       311 ~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~  339 (341)
                      +.+|++++.+.|++           ..++..++.+...++
T Consensus       305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  344 (368)
T 1fch_A          305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG  344 (368)
T ss_dssp             HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence            99999999999888           788888888776654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=8.2e-29  Score=215.30  Aligned_cols=225  Identities=11%  Similarity=0.037  Sum_probs=209.7

Q ss_pred             hhhcccCCCCCchhHhhhcHHHHHHHcCC-chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16588        106 TASMLSQPDGPFIQVSRLNLAKIFEGLNN-MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  184 (341)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  184 (341)
                      ..++..+|++.   .+|.++|.++...|+ +++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++.++|
T Consensus       121 ~~al~l~P~~~---~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP  197 (382)
T 2h6f_A          121 RDAIELNAANY---TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA  197 (382)
T ss_dssp             HHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHhCccCH---HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            34566788887   889999999999997 99999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCHH
Q psy16588        185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG-ISDTRLA-----IQCLHLALSIDSSHGL  258 (341)
Q Consensus       185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~  258 (341)
                      ++..+|+++|.++...|++++|+.+|+++++++|.+  ..+|+++|.++.. .|.+++|     +.+|+++++++|++..
T Consensus       198 ~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~  275 (382)
T 2h6f_A          198 KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES  275 (382)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence            999999999999999999999999999999999999  9999999999999 5655787     5999999999999999


Q ss_pred             HHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC---------CHHHHHHHHHHH-HhcCCCCHH
Q psy16588        259 SQNNLAVLEAREG--HIERASTYLQAAAASSPYLYETHYNQAVISNLAG---------DLQESYNIVKKS-LDLHPGHSY  326 (341)
Q Consensus       259 ~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~a-l~~~p~~~~  326 (341)
                      +|++++.++...|  ++++|+..++++ +.+|++..++..+|.+|.++|         .+++|+.+|+++ ++++|....
T Consensus       276 a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~  354 (382)
T 2h6f_A          276 AWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE  354 (382)
T ss_dssp             HHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHH
Confidence            9999999999988  699999999998 899999999999999999985         359999999999 999999999


Q ss_pred             HHHHHHHHHH
Q psy16588        327 SWDILRKLEQ  336 (341)
Q Consensus       327 ~~~~l~~~~~  336 (341)
                      .|..+.....
T Consensus       355 ~w~~~~~~l~  364 (382)
T 2h6f_A          355 YWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9987776543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.1e-27  Score=204.92  Aligned_cols=229  Identities=11%  Similarity=0.055  Sum_probs=215.6

Q ss_pred             hhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q psy16588        106 TASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGL  184 (341)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p  184 (341)
                      ...+...|.++   ..+..++.++...|++++|+..++++++.+|++..+++.+|.++...| ++++|+.+|++++..+|
T Consensus        46 ~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  122 (330)
T 3hym_B           46 SVVMEKDPFHA---SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK  122 (330)
T ss_dssp             HHHHHHCTTCT---TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHcCCCCh---hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence            34455677776   667778899999999999999999999999999999999999999999 99999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA  264 (341)
Q Consensus       185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  264 (341)
                      .+..++..+|.++...|++++|+.+|++++...|..  ...+..+|.++...|++++|+..|+++++.+|.+..++..+|
T Consensus       123 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  200 (330)
T 3hym_B          123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC--HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG  200 (330)
T ss_dssp             TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            999999999999999999999999999999999998  899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhC---------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        265 VLEAREGHIERASTYLQAAAASS---------PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      .++...|++++|+..++++++..         |.+..++..+|.++...|++++|+.+|++++++.|++..++..++.+.
T Consensus       201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  280 (330)
T 3hym_B          201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH  280 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence            99999999999999999999986         666789999999999999999999999999999999999999999887


Q ss_pred             HHhh
Q psy16588        336 QYFS  339 (341)
Q Consensus       336 ~~~~  339 (341)
                      ...+
T Consensus       281 ~~~g  284 (330)
T 3hym_B          281 SLMG  284 (330)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            6654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.97  E-value=2.4e-27  Score=195.34  Aligned_cols=211  Identities=16%  Similarity=0.122  Sum_probs=204.0

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ...++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHh--hccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16588        199 YSQQYDMVVTCFERALS--LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      ..|++++|+.+|++++.  ..|..  ..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPER--SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999  77777  999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL  331 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  331 (341)
                      +..++++++..|.+..++..++.++...|++++|..++++++++.|+++.++..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999877654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.96  E-value=7.1e-28  Score=189.01  Aligned_cols=173  Identities=14%  Similarity=0.165  Sum_probs=145.8

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH
Q psy16588        151 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS  230 (341)
Q Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la  230 (341)
                      +++.+|+.+|.+|...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+++++...|..  ..++..+|
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~   80 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--AEAYYILG   80 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--HHHHHHHH
Confidence            3567788888888888888888888888888888888888888888888888888888888888888888  88888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16588        231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES  310 (341)
Q Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  310 (341)
                      .++...++++.|...+.+++..+|.+..++..+|.++...|++++|+..|+++++++|.+..++.++|.+|..+|++++|
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhcCCCCH
Q psy16588        311 YNIVKKSLDLHPGHS  325 (341)
Q Consensus       311 ~~~~~~al~~~p~~~  325 (341)
                      +.+|+++++++|+++
T Consensus       161 ~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          161 VKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhCCccCH
Confidence            888888888888654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.96  E-value=4.2e-27  Score=190.08  Aligned_cols=210  Identities=16%  Similarity=0.058  Sum_probs=202.4

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++...|.+..++..+|.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-CChhHHHHHHHHHHh--hccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16588        200 S-QQYDMVVTCFERALS--LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       200 ~-~~~~~A~~~~~~al~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      . |++++|+.++++++.  ..|..  ..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTP--YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            9 999999999999999  55666  899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        277 STYLQAAAASSP-YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL  331 (341)
Q Consensus       277 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  331 (341)
                      +..++++++..| .+...+..++.++...|+.++|..+++.+...+|+++.+...+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            999999999999 9999999999999999999999999999999999999887665

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.96  E-value=1.1e-26  Score=200.81  Aligned_cols=214  Identities=10%  Similarity=0.019  Sum_probs=202.3

Q ss_pred             cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16588        124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY  203 (341)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  203 (341)
                      .+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus       125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  204 (359)
T 3ieg_A          125 SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH  204 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccccchHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHH
Q psy16588        204 DMVVTCFERALSLALNENAADVWY------------NISHVAIGISDTRLAIQCLHLALSIDSSHGL----SQNNLAVLE  267 (341)
Q Consensus       204 ~~A~~~~~~al~~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~  267 (341)
                      ++|+..|+++++..|..  ...+.            .+|.++...|++++|+..|+++++..|++..    ++..+|.++
T Consensus       205 ~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~  282 (359)
T 3ieg_A          205 ELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF  282 (359)
T ss_dssp             HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCccc--hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            99999999999999998  66543            4488899999999999999999999999874    466799999


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      ...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++|++..++..+..+...++
T Consensus       283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999887765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.96  E-value=1.1e-26  Score=200.83  Aligned_cols=213  Identities=15%  Similarity=0.107  Sum_probs=204.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++..
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK   83 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            56888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhcc---ccchHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLAL---NENAADVWYNI------------SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA  264 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~---~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  264 (341)
                      .|++++|+..|++++...|   .+  ..++..+            |.++...|++++|+..++++++..|.+..++..+|
T Consensus        84 ~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           84 QGKLDEAEDDFKKVLKSNPSEQEE--KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HTCHHHHHHHHHHHHTSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHhcCCcccCh--HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            9999999999999999999   77  7777766            79999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      .++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|++..++..+..+
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  231 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV  231 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999887655443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=9.3e-27  Score=207.99  Aligned_cols=212  Identities=17%  Similarity=0.119  Sum_probs=202.8

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ...++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.+|.
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            38899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAA---DVWYNI------------SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL  263 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  263 (341)
                      ..|++++|+.+|++++...|.+  .   .++..+            |.++...|++++|+..|+++++..|.+..++..+
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  183 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSE--NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR  183 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999987  6   665555            6779999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR  332 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  332 (341)
                      |.+|...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++.+.|++...+..+.
T Consensus       184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~  252 (450)
T 2y4t_A          184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK  252 (450)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998877663

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.96  E-value=2.3e-27  Score=197.63  Aligned_cols=222  Identities=12%  Similarity=0.099  Sum_probs=199.0

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGL  184 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  184 (341)
                      +...|.++   ..+..+|.++...|++++|+..|++++. .|.+    ..++..+|.++...|++++|+.+|+++++.+|
T Consensus        30 l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~  105 (272)
T 3u4t_A           30 EAKKYNSP---YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT  105 (272)
T ss_dssp             HHTTCCCS---TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHhCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence            34456666   6789999999999999999999999999 4433    45699999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA  264 (341)
Q Consensus       185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  264 (341)
                      .+..++..+|.++...|++++|+.+|+++++.+|.+  ..+++.+|......+++++|+..|+++++.+|++..++..+|
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  183 (272)
T 3u4t_A          106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA  183 (272)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            999999999999999999999999999999999999  999999994444556999999999999999999999999999


Q ss_pred             HHHHHhCC---HHHHHHHHHHHHHhC---CCc-----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        265 VLEAREGH---IERASTYLQAAAASS---PYL-----YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       265 ~~~~~~g~---~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      .++...|+   +++|+..|++++++.   |+.     ..++..+|.+|...|++++|+.+|+++++++|+++.++..+..
T Consensus       184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~  263 (272)
T 3u4t_A          184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM  263 (272)
T ss_dssp             HHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred             HHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence            99999999   999999999999886   442     2588899999999999999999999999999999999988877


Q ss_pred             HHH
Q psy16588        334 LEQ  336 (341)
Q Consensus       334 ~~~  336 (341)
                      +..
T Consensus       264 ~~~  266 (272)
T 3u4t_A          264 KLE  266 (272)
T ss_dssp             ---
T ss_pred             hhc
Confidence            654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=5.6e-27  Score=200.26  Aligned_cols=224  Identities=16%  Similarity=0.107  Sum_probs=198.5

Q ss_pred             cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH
Q psy16588        111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF  190 (341)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  190 (341)
                      ..|.++   ..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++...|.+...+
T Consensus        50 ~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  126 (327)
T 3cv0_A           50 AAPERE---EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLG  126 (327)
T ss_dssp             HCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-
T ss_pred             hCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH
Confidence            345554   67888889999999999999999999999999999999999999999999999999999999888887777


Q ss_pred             HHH--------------HH-HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16588        191 NNL--------------AL-CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS  255 (341)
Q Consensus       191 ~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  255 (341)
                      ..+              +. ++...|++++|+.++++++...|.+  ..++..+|.++...|++++|+..++++++.+|+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  204 (327)
T 3cv0_A          127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND--AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD  204 (327)
T ss_dssp             -------------------CCTTSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            666              66 6778889999999999999999988  999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------
Q psy16588        256 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG------------  323 (341)
Q Consensus       256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------  323 (341)
                      +..++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|++++.+.|+            
T Consensus       205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  284 (327)
T 3cv0_A          205 DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA  284 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999            


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy16588        324 HSYSWDILRKLEQYFS  339 (341)
Q Consensus       324 ~~~~~~~l~~~~~~~~  339 (341)
                      +..++..++.+....+
T Consensus       285 ~~~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          285 TRSMWDFFRMLLNVMN  300 (327)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            7888888887766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.96  E-value=6e-27  Score=183.70  Aligned_cols=170  Identities=16%  Similarity=0.234  Sum_probs=166.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..|+++|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..+.+++...|.+..++..+|.++..
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM   85 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .++++.|+..+.+++...|.+  ..++..+|.++...|++++|+..|+++++.+|.++.+++++|.+|..+|++++|+..
T Consensus        86 ~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           86 IDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999999999  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCch
Q psy16588        280 LQAAAASSPYLY  291 (341)
Q Consensus       280 ~~~al~~~p~~~  291 (341)
                      |+++++++|++.
T Consensus       164 ~~~al~~~p~~a  175 (184)
T 3vtx_A          164 FKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHTTHHHH
T ss_pred             HHHHHhCCccCH
Confidence            999999998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.8e-26  Score=213.52  Aligned_cols=220  Identities=14%  Similarity=0.097  Sum_probs=207.0

Q ss_pred             cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH
Q psy16588        111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF  190 (341)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  190 (341)
                      ..|++.   ..+..+|.+|...|++++|+.+|+++++.+|.+..+|..++.+|...|++++|++.|++++...|.+..++
T Consensus       368 ~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  444 (597)
T 2xpi_A          368 RHPEKA---VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY  444 (597)
T ss_dssp             HCTTSH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred             hCcccH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence            455555   77888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-HHHHHHH
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI------DSSH-GLSQNNL  263 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~l  263 (341)
                      ..++.+|...|++++|+.+|+++++..|.+  ..+|..++.++...|++++|+..|+++++.      +|++ ..+|..+
T Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          445 LFLGMQHMQLGNILLANEYLQSSYALFQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            999999999999999999999999999999  999999999999999999999999999988      5654 7899999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      |.++...|++++|+..|+++++.+|++..++..++.+|...|++++|..+|+++++++|++..++..++.+.
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998887653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=1.3e-26  Score=207.11  Aligned_cols=215  Identities=10%  Similarity=0.028  Sum_probs=203.5

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  201 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  201 (341)
                      ++.+|.++...|++++|+..|+++++..|.+..++..+|.+|...|++++|+..|++++..+|.+..++..+|.++...|
T Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG  225 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            44557889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhhccccchHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHH
Q psy16588        202 QYDMVVTCFERALSLALNENAADVWYNI------------SHVAIGISDTRLAIQCLHLALSIDSSHG----LSQNNLAV  265 (341)
Q Consensus       202 ~~~~A~~~~~~al~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~  265 (341)
                      ++++|+.+|++++...|++  ...+..+            |.++...|++++|+.+|+++++..|.++    ..+..+|.
T Consensus       226 ~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~  303 (450)
T 2y4t_A          226 DHELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH  303 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            9999999999999999998  7776655            9999999999999999999999999985    47899999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        266 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       266 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      ++...|++++|+..++++++++|++..+|..+|.++...|++++|+..|+++++++|++..++..++.+...+
T Consensus       304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  376 (450)
T 2y4t_A          304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL  376 (450)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999998776554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=1.4e-26  Score=197.76  Aligned_cols=218  Identities=13%  Similarity=0.103  Sum_probs=203.2

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNI--------------SH-VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA  264 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  264 (341)
                      .|++++|+..+++++...|..  ...+..+              +. ++...|++++|+..++++++..|.+..++..+|
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  179 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQY--EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG  179 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTT--TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCcc--HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            999999999999999999988  6666665              66 688999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++..|++..++..++.+....+
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999998888776543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.95  E-value=1e-26  Score=188.82  Aligned_cols=210  Identities=10%  Similarity=0.035  Sum_probs=189.8

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ..++..|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            7899999999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAA-------DVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAR  269 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~  269 (341)
                      ..|++++|+.+|+++++..|++  .       .++..+|.++...|++++|+..|+++++.+|+  +..++.++|.++..
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPGN--ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            9999999999999999999998  6       67999999999999999999999999999999  89999999999976


Q ss_pred             hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      .|     ...++++..+.+.+...+  .+......+.+++|+.+|+++++++|++..+...+..+...+
T Consensus       166 ~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~  227 (228)
T 4i17_A          166 NG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI  227 (228)
T ss_dssp             HH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred             HH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence            65     445677777766664433  445566678899999999999999999999999998887543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.95  E-value=2.8e-26  Score=206.12  Aligned_cols=202  Identities=16%  Similarity=0.123  Sum_probs=155.8

Q ss_pred             CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy16588        134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP-EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFER  212 (341)
Q Consensus       134 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  212 (341)
                      ++++++..+++.....|.+..+++.+|.++...|++ ++|+.+|+++++.+|++..+|+.+|.+|...|++++|+.+|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356666777777777777777777778777777777 7788888887777777777777788877777888888888888


Q ss_pred             HHhhccccchHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------CCHHH
Q psy16588        213 ALSLALNENAADVWYNISHVAIGI---------SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE--------GHIER  275 (341)
Q Consensus       213 al~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------g~~~~  275 (341)
                      +++++|+   ..++.++|.++...         |++++|+..|+++++++|++..+|+.+|.+|...        |++++
T Consensus       163 al~~~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          163 ALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHTTCCC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHhhCCC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            7777766   47777777777777         7777888888888777777777777777777777        77778


Q ss_pred             HHHHHHHHHHhCC---CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        276 ASTYLQAAAASSP---YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       276 A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      |+..|+++++++|   ++..+|+++|.+|...|++++|+.+|+++++++|++..++..++.+...+
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l  305 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL  305 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8888888877777   77777777888877778888888888888777777777777776665544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.95  E-value=4.4e-27  Score=219.40  Aligned_cols=172  Identities=19%  Similarity=0.211  Sum_probs=124.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHH
Q psy16588        149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYN  228 (341)
Q Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  228 (341)
                      .|+++++++++|.+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++  ..++++
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~n   82 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN   82 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence            466667777777777777777777777777777777777777777777777777777777777777777777  777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Q psy16588        229 ISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQ  308 (341)
Q Consensus       229 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  308 (341)
                      +|.++..+|++++|++.|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++.++|.++..+|+++
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhcCC
Q psy16588        309 ESYNIVKKSLDLHP  322 (341)
Q Consensus       309 ~A~~~~~~al~~~p  322 (341)
                      +|.+.+++++++.|
T Consensus       163 ~A~~~~~kal~l~~  176 (723)
T 4gyw_A          163 DYDERMKKLVSIVA  176 (723)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCh
Confidence            77777777766543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.95  E-value=2.9e-25  Score=205.42  Aligned_cols=224  Identities=10%  Similarity=0.014  Sum_probs=200.2

Q ss_pred             cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHH
Q psy16588        111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELF  190 (341)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  190 (341)
                      ..|.+.   ..+..++.++...|++++|+..++++++..|++..++..+|.+|...|++++|+.+|+++++..|.+..+|
T Consensus       334 ~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  410 (597)
T 2xpi_A          334 IDPYNL---DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW  410 (597)
T ss_dssp             HCTTCC---TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCcccH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            345555   55667777777888888888888888888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                      ..++.+|...|++++|+..|++++...|.+  ..++..++.+|...|++++|++.|+++++..|.++.++..+|.++...
T Consensus       411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (597)
T 2xpi_A          411 IGFAHSFAIEGEHDQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK  488 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            999999999999999999999999999988  899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHh------CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        271 GHIERASTYLQAAAAS------SPYL-YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       271 g~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      |++++|+..|+++++.      +|++ ..+|..++.++...|++++|+..|+++++++|++..++..++.+....+
T Consensus       489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  564 (597)
T 2xpi_A          489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK  564 (597)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            9999999999999988      5554 6789999999999999999999999999999999999988888766543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.95  E-value=1.5e-26  Score=207.98  Aligned_cols=194  Identities=15%  Similarity=0.103  Sum_probs=189.2

Q ss_pred             HhhhcHHHHHHHcCCc-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNM-PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ..++.+|.++...|++ ++|+.+|+++++.+|++..+++.+|.+|...|++++|+.+|+++++.+|+ ..++..+|.++.
T Consensus       103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~  181 (474)
T 4abn_A          103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLR  181 (474)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHH
Confidence            8899999999999999 99999999999999999999999999999999999999999999999999 799999999999


Q ss_pred             Hc---------CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCC---CCHH
Q psy16588        199 YS---------QQYDMVVTCFERALSLALNENAADVWYNISHVAIGI--------SDTRLAIQCLHLALSIDS---SHGL  258 (341)
Q Consensus       199 ~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~  258 (341)
                      ..         |++++|+.+|+++++++|++  ..+|+++|.+|...        |++++|+..|+++++++|   .++.
T Consensus       182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  259 (474)
T 4abn_A          182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD  259 (474)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred             HhccCChhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence            99         99999999999999999999  99999999999999        999999999999999999   9999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      +++++|.+|...|++++|+..|+++++++|++..++..++.++...|++++|+..+.+
T Consensus       260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999987654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=3.6e-26  Score=190.40  Aligned_cols=215  Identities=9%  Similarity=0.021  Sum_probs=195.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----HHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN----AELFNNLAL  195 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~  195 (341)
                      ..++..|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++. .|.+    ..++..+|.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999 4433    456999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16588        196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER  275 (341)
Q Consensus       196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  275 (341)
                      ++...|++++|+.+|+++++.+|.+  ..++..+|.++...|++++|+.+|+++++.+|.+..++..+|......+++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTR--LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTC--THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999  99999999999999999999999999999999999999999955556679999


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHH
Q psy16588        276 ASTYLQAAAASSPYLYETHYNQAVISNLAGD---LQESYNIVKKSLDLH---PGH-----SYSWDILRKLEQY  337 (341)
Q Consensus       276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~  337 (341)
                      |+..|+++++.+|++..++..+|.++...|+   +++|+..|++++++.   |+.     ..++..++.+...
T Consensus       161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (272)
T 3u4t_A          161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI  233 (272)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999   999999999999886   442     2455666665543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.95  E-value=8.2e-25  Score=184.00  Aligned_cols=209  Identities=17%  Similarity=0.087  Sum_probs=189.4

Q ss_pred             hhHhhhcHHHHHHHcCCchHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16588        118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKR--DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL  195 (341)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  195 (341)
                      ...+...++..+...+++++|++.+++++..  +|+++.+++.+|.++...|++++|+..|++     |.+..++..+|.
T Consensus        64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~  138 (291)
T 3mkr_A           64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQ  138 (291)
T ss_dssp             HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHH
Confidence            3467778889999999999999999999976  599999999999999999999999999998     899999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16588        196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNIS--HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI  273 (341)
Q Consensus       196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  273 (341)
                      ++...|++++|+..|+++++.+|+.  .......+  .++...|++++|+..|+++++.+|+++.+++++|.++...|++
T Consensus       139 ~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          139 ILLKLDRLDLARKELKKMQDQDEDA--TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999999987  54433333  4445669999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE-SYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      ++|+..|+++++.+|+++.++.++|.++...|+..+ +..+++++++++|+++.+.....+
T Consensus       217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~  277 (291)
T 3mkr_A          217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAK  277 (291)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            999999999999999999999999999999999976 578999999999999987765443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.94  E-value=1.7e-25  Score=181.66  Aligned_cols=154  Identities=15%  Similarity=0.137  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL-YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS  230 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la  230 (341)
                      ++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+.+|+++++.+|.+  ..++..+|
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~   83 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL--ANAYIGKS   83 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--HHHHHHHH
Confidence            345555555555555555555555555555555 455555555555555555555555555555555555  55555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--chhHHHHHHHHH
Q psy16588        231 HVAIGISDTRLAIQCLHLALSIDSSHG-------LSQNNLAVLEAREGHIERASTYLQAAAASSPY--LYETHYNQAVIS  301 (341)
Q Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~  301 (341)
                      .++...|++++|+..|+++++.+|++.       .++..+|.++...|++++|+..|+++++++|+  +..++.++|.++
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            555555555555555555555555554       33555555555555555555555555555555  555555555555


Q ss_pred             HHcCCH
Q psy16588        302 NLAGDL  307 (341)
Q Consensus       302 ~~~g~~  307 (341)
                      ...|+.
T Consensus       164 ~~~~~~  169 (228)
T 4i17_A          164 YNNGAD  169 (228)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=2.2e-25  Score=193.76  Aligned_cols=207  Identities=15%  Similarity=0.126  Sum_probs=188.0

Q ss_pred             cccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----
Q psy16588        109 MLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG-----  183 (341)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----  183 (341)
                      +...|.++   ..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...     
T Consensus        91 l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  167 (368)
T 1fch_A           91 VQQDPKHM---EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH  167 (368)
T ss_dssp             HHSCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             HHhCCCCH---HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            33455555   7788889999999999999999999999999999999999999999888888888777766654     


Q ss_pred             --------------------------------------------CC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16588        184 --------------------------------------------LY--NAELFNNLALCCFYSQQYDMVVTCFERALSLA  217 (341)
Q Consensus       184 --------------------------------------------p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  217 (341)
                                                                  |.  +..++..+|.++...|++++|+.+|++++...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  247 (368)
T 1fch_A          168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR  247 (368)
T ss_dssp             GCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                                                        44  67889999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc-------
Q psy16588        218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL-------  290 (341)
Q Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------  290 (341)
                      |.+  ..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.+.|++       
T Consensus       248 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  325 (368)
T 1fch_A          248 PND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG  325 (368)
T ss_dssp             TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred             cCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence            999  99999999999999999999999999999999999999999999999999999999999999999888       


Q ss_pred             ----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        291 ----YETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       291 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                          ..+|..+|.++..+|++++|..+++++++.
T Consensus       326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          326 GAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             cchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence                789999999999999999999998877754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.94  E-value=4.4e-26  Score=212.67  Aligned_cols=168  Identities=17%  Similarity=0.138  Sum_probs=165.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      .++.++|.++.++|++++|+..|+++++.+|++..+++++|.+|..+|++++|+..|+++++++|++..+++++|.++..
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~   89 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE   89 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      +|++++|+++|+++++++|++  ..+++++|.+|..+|++++|+..|+++++++|++..++.++|.++..+|++++|++.
T Consensus        90 ~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~  167 (723)
T 4gyw_A           90 MQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER  167 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence            999999999999999999999  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCC
Q psy16588        280 LQAAAASSPY  289 (341)
Q Consensus       280 ~~~al~~~p~  289 (341)
                      +++++++.|+
T Consensus       168 ~~kal~l~~~  177 (723)
T 4gyw_A          168 MKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhChh
Confidence            9999987554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.1e-25  Score=204.29  Aligned_cols=216  Identities=17%  Similarity=0.134  Sum_probs=206.0

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ...+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|++++...|.+..++..+|.++.
T Consensus       270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  349 (514)
T 2gw1_A          270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY  349 (514)
T ss_dssp             HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL------SQNNLAVLEAR---  269 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~---  269 (341)
                      ..|++++|+.++++++...|.+  ..++..+|.++...|++++|+..|+++++..|.+..      ++..+|.++..   
T Consensus       350 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  427 (514)
T 2gw1_A          350 RENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT  427 (514)
T ss_dssp             TTTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred             HcCCHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999  999999999999999999999999999999888755      99999999999   


Q ss_pred             hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      .|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++++++|+++.++..+..+..
T Consensus       428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA  494 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998876655443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.3e-25  Score=202.08  Aligned_cols=221  Identities=12%  Similarity=0.041  Sum_probs=211.0

Q ss_pred             CchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16588        116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLAL  195 (341)
Q Consensus       116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  195 (341)
                      +.....+..+|.++...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..|++++...|.+..++..+|.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  312 (514)
T 2gw1_A          234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ  312 (514)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence            344478899999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16588        196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER  275 (341)
Q Consensus       196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  275 (341)
                      ++...|++++|+.+|++++...|.+  ..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++
T Consensus       313 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  390 (514)
T 2gw1_A          313 MNFILQNYDQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK  390 (514)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH
Confidence            9999999999999999999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCchh------HHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        276 ASTYLQAAAASSPYLYE------THYNQAVISNL---AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       276 A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      |+..|++++...|++..      ++..+|.++..   .|++++|+..|++++...|++..++..++.+....+
T Consensus       391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  463 (514)
T 2gw1_A          391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE  463 (514)
T ss_dssp             HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence            99999999999988865      99999999999   999999999999999999999999999888876543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=5.3e-25  Score=200.94  Aligned_cols=207  Identities=14%  Similarity=0.061  Sum_probs=101.9

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|.+..++..+|.++..
T Consensus       277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  356 (537)
T 3fp2_A          277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK  356 (537)
T ss_dssp             HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHh---
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEARE---  270 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~---  270 (341)
                      .|++++|+.+|+++++..|.+  ..++..+|.++...|++++|+..|+++++..|.+.      ..++.+|.++...   
T Consensus       357 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  434 (537)
T 3fp2_A          357 QGKFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ  434 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence            444444444444444444444  44444444444444555555555544444443322      1233334444444   


Q ss_pred             -------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        271 -------GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       271 -------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  328 (341)
                             |++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++++.|++....
T Consensus       435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  499 (537)
T 3fp2_A          435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL  499 (537)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred             cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence                   5555555555555555555555555555555555555555555555555555554443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.94  E-value=1.2e-24  Score=180.44  Aligned_cols=186  Identities=15%  Similarity=0.159  Sum_probs=107.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHH
Q psy16588        149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAAD  224 (341)
Q Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~  224 (341)
                      .|.++..++.+|..++..|++++|+..|++++...|.+   ..+++.+|.+++..|++++|+..|++++...|++ ....
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            34444444444554444455555555555544444444   4444445555555555555555555554444432 2234


Q ss_pred             HHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHhCCHHHHHHH
Q psy16588        225 VWYNISHVAIG--------ISDTRLAIQCLHLALSIDSSHGLS-----------------QNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       225 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~  279 (341)
                      +++.+|.++..        .|++++|+..|+++++..|++..+                 ++.+|.+|...|++++|+..
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            44445555444        455555555555555544444333                 37778888888888888888


Q ss_pred             HHHHHHhCCC---chhHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        280 LQAAAASSPY---LYETHYNQAVISNLA----------GDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       280 ~~~al~~~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      |+++++..|+   ...+++.+|.+|..+          |++++|+..|+++++.+|+++.+......+
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  238 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELY  238 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            8888887777   345777888888766          777888888888888888875544433333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=6.6e-25  Score=200.33  Aligned_cols=217  Identities=10%  Similarity=0.051  Sum_probs=205.9

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      .++..+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+.+|++++..+|.++.++..+|.++..
T Consensus       244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence            56888999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|++++|+..|++++...|.+  ..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  400 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPEN--VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ  400 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            999999999999999999999  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCchh------HHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        280 LQAAAASSPYLYE------THYNQAVISNLA----------GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       280 ~~~al~~~p~~~~------~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      |+++++..|++..      .+..++.++...          |++++|+.+|+++++.+|++..++..++.+....+
T Consensus       401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g  476 (537)
T 3fp2_A          401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME  476 (537)
T ss_dssp             HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            9999998876554      356778999999          99999999999999999999999999988876544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=1.9e-24  Score=176.76  Aligned_cols=184  Identities=17%  Similarity=0.204  Sum_probs=174.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++..
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|++++|+.++++++...|.+  ..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..
T Consensus       138 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  215 (243)
T 2q7f_A          138 LEQPKLALPYLQRAVELNEND--TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM  215 (243)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence            999999999999999999999  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLAG  305 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~g  305 (341)
                      |+++++++|++..++..++.+....+
T Consensus       216 ~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          216 LDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHccCcchHHHHHHHHHHHhhcc
Confidence            99999999999999988887765544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.93  E-value=8.9e-24  Score=170.47  Aligned_cols=188  Identities=16%  Similarity=0.118  Sum_probs=177.9

Q ss_pred             hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16588        148 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  227 (341)
Q Consensus       148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  227 (341)
                      ..|+++.+++.+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|++++...|.+  ..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~   80 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS--AEINN   80 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHH
Confidence            3567788999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             HHHHHHHhc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16588        228 NISHVAIGI-SDTRLAIQCLHLALS--IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA  304 (341)
Q Consensus       228 ~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  304 (341)
                      .+|.++... |++++|+..++++++  ..|.+..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  160 (225)
T 2vq2_A           81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA  160 (225)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence            999999999 999999999999999  66777899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q psy16588        305 GDLQESYNIVKKSLDLHP-GHSYSWDILRKLEQY  337 (341)
Q Consensus       305 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~  337 (341)
                      |++++|+.++++++...| ++...+..+..+...
T Consensus       161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA  194 (225)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999 998888777666543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.93  E-value=3e-24  Score=178.83  Aligned_cols=204  Identities=11%  Similarity=0.043  Sum_probs=186.5

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ...+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++..+|.+..++..+|.++.
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  122 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  122 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      ..|++++|+.+|+++++..|.+  ......++.+ ...|++++|+..+++++...|.+...+. ++.++...++.++|+.
T Consensus       123 ~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~  198 (275)
T 1xnf_A          123 YGGRDKLAQDDLLAFYQDDPND--PFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME  198 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCC--hHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHH
Confidence            9999999999999999999998  6655555544 6669999999999999999988866654 7778888899999999


Q ss_pred             HHHHHHHhCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        279 YLQAAAASSPYL----YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       279 ~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      .+++++...|..    ..++..+|.++...|++++|+.+|++++.++|++..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence            999998876643    678999999999999999999999999999997755

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.93  E-value=7.1e-24  Score=180.06  Aligned_cols=217  Identities=12%  Similarity=0.039  Sum_probs=196.7

Q ss_pred             hhhhcccCCCCCchhHhhhcHHHHHHH-------cCCc-------hHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCh
Q psy16588        105 GTASMLSQPDGPFIQVSRLNLAKIFEG-------LNNM-------PMSVKYYKLILK-RDATCMEAIACIGVNHFYNDQP  169 (341)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~  169 (341)
                      -..++...|.++   ..|+.+|..+..       .|++       ++|+..|+++++ .+|++..+|..+|.++...|++
T Consensus        39 ~~~al~~~p~~~---~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~  115 (308)
T 2ond_A           39 YEQCLLVLGHHP---DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY  115 (308)
T ss_dssp             HHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCCH---HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence            344556677777   789999888764       5887       899999999999 6999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHH-hcCCHHHHHHHHH
Q psy16588        170 EVALLFYRRLLQMGLYNAE-LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI-GISDTRLAIQCLH  247 (341)
Q Consensus       170 ~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~  247 (341)
                      ++|+..|+++++..|.++. +|..+|.++...|++++|+.+|+++++..|..  ..+|...+.+.. ..|++++|+..|+
T Consensus       116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~  193 (308)
T 2ond_A          116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFE  193 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999887 99999999999999999999999999999988  888877776654 3799999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        248 LALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS---SP-YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       248 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      ++++.+|+++.+|..++.++...|++++|+..|++++..   .| +...+|..++.++...|++++|...++++++..|+
T Consensus       194 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          194 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            999999999999999999999999999999999999996   44 36779999999999999999999999999999998


Q ss_pred             CHH
Q psy16588        324 HSY  326 (341)
Q Consensus       324 ~~~  326 (341)
                      +..
T Consensus       274 ~~~  276 (308)
T 2ond_A          274 EYE  276 (308)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.93  E-value=7.7e-23  Score=170.54  Aligned_cols=203  Identities=13%  Similarity=0.109  Sum_probs=156.6

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFNNLAL  195 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~  195 (341)
                      .+++.+|.++...|++++|+.+|+++++  +++..+++.+|.+|..    .+++++|+.+|+++++.+  ++.+++.+|.
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~   82 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN   82 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence            6677778888888888888888888877  6677788888888887    888888888888887764  6777888888


Q ss_pred             HHHH----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        196 CCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       196 ~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      +|..    .+++++|+.+|+++++..  +  ..+++.+|.+|..    .+++++|+.+|+++++..  +..++..+|.++
T Consensus        83 ~~~~g~~~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~  156 (273)
T 1ouv_A           83 LYYSGQGVSQNTNKALQYYSKACDLK--Y--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLY  156 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHhCCCCcccCHHHHHHHHHHHHHcC--C--ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence            8887    888888888888887763  5  7778888888887    788888888888887765  567777888888


Q ss_pred             HH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        268 AR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       268 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      ..    .+++++|+.+|+++++.  .+..+++.+|.+|..    .+++++|+.+|+++++..|  ..++..++.+..
T Consensus       157 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          157 DAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            77    78888888888888776  346777788888888    7888888888888877755  566666666544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.9e-24  Score=183.24  Aligned_cols=209  Identities=17%  Similarity=0.139  Sum_probs=188.1

Q ss_pred             CCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q psy16588        113 PDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--  182 (341)
Q Consensus       113 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--  182 (341)
                      +++|.....+..+|.++...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++..  
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            455555688999999999999999999999999984        5667788999999999999999999999999987  


Q ss_pred             ------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16588        183 ------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--------LNENAADVWYNISHVAIGISDTRLAIQCLHL  248 (341)
Q Consensus       183 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (341)
                            .|....++..+|.++...|++++|+.+|++++.+.        |..  ..++..+|.++...|++++|+.+|++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV--AKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  46667899999999999999999999999999885        444  78899999999999999999999999


Q ss_pred             HHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------------------------
Q psy16588        249 ALSI--------DSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS----------------------------------  286 (341)
Q Consensus       249 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------------------------  286 (341)
                      +++.        .|....++..+|.++...|++++|+.+|+++++.                                  
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT  258 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence            9998        6666788999999999999999999999999974                                  


Q ss_pred             ---------------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        287 ---------------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       287 ---------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                                     .|....++..+|.+|...|++++|+.+|++++++.|+
T Consensus       259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                           3555668999999999999999999999999998775

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.93  E-value=1.6e-23  Score=176.17  Aligned_cols=210  Identities=16%  Similarity=0.119  Sum_probs=186.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--GLYNAELFNNLALCC  197 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~  197 (341)
                      ...+.++.+|...|++++|+..++..   +|....++..++..+...++.++|++.+++++..  +|+++.+++.+|.++
T Consensus        35 e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~  111 (291)
T 3mkr_A           35 ERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY  111 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence            35566789999999999999988662   5556778889999999999999999999999876  699999999999999


Q ss_pred             HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHhCCHHH
Q psy16588        198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA--VLEAREGHIER  275 (341)
Q Consensus       198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~g~~~~  275 (341)
                      ...|++++|+..|++     |.+  ..++..+|.++..+|++++|++.|+++++.+|++.......+  .++...|++++
T Consensus       112 ~~~g~~~~Al~~l~~-----~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~e  184 (291)
T 3mkr_A          112 FYDQNPDAALRTLHQ-----GDS--LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD  184 (291)
T ss_dssp             HHTTCHHHHHHHHTT-----CCS--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHCCCHHHHHHHHhC-----CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHH
Confidence            999999999999998     777  999999999999999999999999999999999865444333  33334589999


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      |+..|+++++..|+++.+++++|.++..+|++++|+..|++++.++|++++++..++.+....+
T Consensus       185 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999887765543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.93  E-value=1.4e-23  Score=172.62  Aligned_cols=188  Identities=14%  Similarity=0.055  Sum_probs=178.8

Q ss_pred             CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16588        149 DATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  227 (341)
Q Consensus       149 ~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  227 (341)
                      +|.+ +.+++.+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|++++...|.+  ..++.
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~  109 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN--ARVLN  109 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHH
Confidence            4444 67899999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16588        228 NISHVAIGISDTRLAIQCLHLALS--IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG  305 (341)
Q Consensus       228 ~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  305 (341)
                      .+|.++...|++++|+.+|+++++  ..|.+..++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|
T Consensus       110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g  189 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER  189 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence            999999999999999999999999  888899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        306 DLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       306 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      ++++|+.++++++...|++..++..++.+....
T Consensus       190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (252)
T 2ho1_A          190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF  222 (252)
T ss_dssp             CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence            999999999999999999999888887776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.92  E-value=2.7e-23  Score=186.75  Aligned_cols=215  Identities=11%  Similarity=0.093  Sum_probs=190.8

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKR---------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------  182 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------  182 (341)
                      ..+..+|.++...|++++|++.|++++++         +|.....+.++|.+|..+|++++|+.+|++++.+        
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            66778999999999999999999999876         5667888999999999999999999999999876        


Q ss_pred             CCCcHHHHHHHHHHHHHc--CChhHHHHHHHHHHhhccccchHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        183 GLYNAELFNNLALCCFYS--QQYDMVVTCFERALSLALNENAADVWYNISHVAI---GISDTRLAIQCLHLALSIDSSHG  257 (341)
Q Consensus       183 ~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~  257 (341)
                      .+..+.++..+|.++...  ++|++|+.+|+++++++|++  +.++..++.++.   ..+++++|++.|+++++++|++.
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~--~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~  209 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN--PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ  209 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence            345678888888877765  47999999999999999999  999999988864   45788899999999999999999


Q ss_pred             HHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        258 LSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRK  333 (341)
Q Consensus       258 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  333 (341)
                      .++..+|..+..    .|++++|+.++++++..+|.+..++.++|.+|...|++++|+..|+++++.+|++..++..++.
T Consensus       210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  289 (472)
T 4g1t_A          210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC  289 (472)
T ss_dssp             HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            999999877655    4678899999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHH
Q psy16588        334 LEQ  336 (341)
Q Consensus       334 ~~~  336 (341)
                      +..
T Consensus       290 ~y~  292 (472)
T 4g1t_A          290 CYR  292 (472)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.92  E-value=2.1e-24  Score=202.07  Aligned_cols=187  Identities=13%  Similarity=-0.008  Sum_probs=172.9

Q ss_pred             cCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16588        111 SQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLIL--------KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM  182 (341)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  182 (341)
                      .+|+++   ..++..+   ...|++++|+..|++++        +.+|++..+++.+|.++...|++++|+..|+++++.
T Consensus       389 ~~p~~~---~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  462 (681)
T 2pzi_A          389 VDPTDV---AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER  462 (681)
T ss_dssp             CCTTST---THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCCc---chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence            355666   3444433   78999999999999999        899999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN  262 (341)
Q Consensus       183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  262 (341)
                      +|++..+++.+|.++...|++++|+..|+++++++|++  ..+++++|.++...|++++ +..|+++++++|++..++++
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~  539 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE--LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFG  539 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHH
Confidence            99999999999999999999999999999999999999  9999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16588        263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD  306 (341)
Q Consensus       263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  306 (341)
                      +|.++..+|++++|+..|+++++++|++..++.++|.++...++
T Consensus       540 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          540 LARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99999999999999999999999999999999999999988666

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.92  E-value=7.2e-24  Score=175.64  Aligned_cols=191  Identities=12%  Similarity=0.041  Sum_probs=172.2

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---cHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY---NAELFNNL  193 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  193 (341)
                      ..++.+|..++..|++++|+..|+++++.+|++   ..+++.+|.+|...|++++|+..|++++...|+   ...+++.+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l   95 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER   95 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence            789999999999999999999999999999998   899999999999999999999999999999874   46789999


Q ss_pred             HHHHHH--------cCChhHHHHHHHHHHhhcccc-chHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q psy16588        194 ALCCFY--------SQQYDMVVTCFERALSLALNE-NAADVW--------------YNISHVAIGISDTRLAIQCLHLAL  250 (341)
Q Consensus       194 a~~~~~--------~~~~~~A~~~~~~al~~~~~~-~~~~~~--------------~~la~~~~~~g~~~~A~~~~~~al  250 (341)
                      |.++..        .|++++|+..|++++...|++ ....++              +.+|.+|...|++++|+..|++++
T Consensus        96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A           96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999        999999999999999999988 222233              889999999999999999999999


Q ss_pred             hcCCC---CHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHcCCHHHH
Q psy16588        251 SIDSS---HGLSQNNLAVLEARE----------GHIERASTYLQAAAASSPYLYE---THYNQAVISNLAGDLQES  310 (341)
Q Consensus       251 ~~~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A  310 (341)
                      +..|+   ...+++.+|.+|..+          |++++|+..|+++++..|++..   +...++.++...++++++
T Consensus       176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            99998   467999999999977          9999999999999999999864   566777777777776554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.92  E-value=1.1e-23  Score=168.45  Aligned_cols=180  Identities=13%  Similarity=0.159  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHhh
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNN----------------LALCCFYSQQYDMVVTCFERALSL  216 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~  216 (341)
                      .+.++..|..+...|++++|+.+|++++..+|+++.+++.                +|.++...|++++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4455555666666666666666666666666666666666                999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCchhHH
Q psy16588        217 ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH--IERASTYLQAAAASSPYLYETH  294 (341)
Q Consensus       217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~  294 (341)
                      +|++  ..+++.+|.++...|++++|+..|+++++++|+++.+++++|.+|...|+  .+.+...+++++...| ...++
T Consensus        84 ~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~  160 (208)
T 3urz_A           84 APNN--VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYAR  160 (208)
T ss_dssp             CTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred             CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHH
Confidence            9999  99999999999999999999999999999999999999999999877654  4556777777654332 23467


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        295 YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       295 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      +.+|.++...|++++|+.+|+++++++|++ .+...+.++..
T Consensus       161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~~  201 (208)
T 3urz_A          161 YRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILR  201 (208)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence            888999999999999999999999999974 45555666543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.5e-23  Score=169.38  Aligned_cols=187  Identities=11%  Similarity=0.097  Sum_probs=175.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc--c---hHHHH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE--N---AADVW  226 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~---~~~~~  226 (341)
                      .++.+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.++++++...|..  .   ...++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            46789999999999999999999999999999 999999999999999999999999999999998865  1   15889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLALS--------------------------IDSSHGLSQNNLAVLEAREGHIERASTYL  280 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  280 (341)
                      ..+|.++...|++++|+..|+++++                          .+|.+..++..+|.++...|++++|+..|
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  162 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY  162 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999999999999                          66777889999999999999999999999


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        281 QAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       281 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      +++++.+|.+..++..+|.++...|++++|+.+|+++++.+|++..++..++.+....+
T Consensus       163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  221 (258)
T 3uq3_A          163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK  221 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999988876544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=7.4e-23  Score=173.77  Aligned_cols=201  Identities=11%  Similarity=0.007  Sum_probs=183.8

Q ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHc
Q psy16588        136 PMSVKYYKLILKRDATCMEAIACIGVNHFY-------NDQP-------EVALLFYRRLLQ-MGLYNAELFNNLALCCFYS  200 (341)
Q Consensus       136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  200 (341)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. +.|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            689999999999999999999999999874       5886       999999999999 7999999999999999999


Q ss_pred             CChhHHHHHHHHHHhhccccchHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCCHHHHHH
Q psy16588        201 QQYDMVVTCFERALSLALNENAAD-VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR-EGHIERAST  278 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~  278 (341)
                      |++++|..+|++++++.|.+  .. +|..+|.++...|++++|+..|+++++..|....+|...+.+... .|++++|+.
T Consensus       113 ~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccC--ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999988  76 999999999999999999999999999999998888877766544 699999999


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHh
Q psy16588        279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL---HPG-HSYSWDILRKLEQYF  338 (341)
Q Consensus       279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~  338 (341)
                      .|+++++.+|++..+|..++.++...|++++|+..|++++..   .|+ +...|..+..+....
T Consensus       191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~  254 (308)
T 2ond_A          191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  254 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999995   553 677887776665543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.91  E-value=4.9e-23  Score=160.82  Aligned_cols=172  Identities=16%  Similarity=0.139  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      ...+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.+  ..++..+|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777788888888888877777777  7777778888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN  312 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  312 (341)
                      +...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|..
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            87788888888888888877777777778888888888888888888888888877777778888888888888888888


Q ss_pred             HHHHHHhcCCCCHH
Q psy16588        313 IVKKSLDLHPGHSY  326 (341)
Q Consensus       313 ~~~~al~~~p~~~~  326 (341)
                      ++++++++.|++..
T Consensus       166 ~~~~~~~~~~~~~~  179 (186)
T 3as5_A          166 HFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHHCCCG
T ss_pred             HHHHHHHcCCCchh
Confidence            88888877776643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.91  E-value=4.1e-22  Score=166.15  Aligned_cols=196  Identities=13%  Similarity=0.134  Sum_probs=183.0

Q ss_pred             HhhhcHHHHHHH----cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16588        120 VSRLNLAKIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFN  191 (341)
Q Consensus       120 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~  191 (341)
                      .+++.+|.++..    .+++++|+.+|+++++..  ++.+++.+|.+|..    .+++++|+.+|+++++.+  ++.+++
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~  114 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCA  114 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHH
Confidence            678999999999    999999999999999885  89999999999999    999999999999999974  889999


Q ss_pred             HHHHHHHH----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        192 NLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLSQNNL  263 (341)
Q Consensus       192 ~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  263 (341)
                      .+|.+|..    .+++++|+.+|+++++..  +  ..+++++|.++..    .+++++|+.+|+++++.  .++.+++.+
T Consensus       115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l  188 (273)
T 1ouv_A          115 SLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D--GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNA  188 (273)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            99999999    999999999999999875  5  7899999999998    99999999999999987  468899999


Q ss_pred             HHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHH
Q psy16588        264 AVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYS  327 (341)
Q Consensus       264 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~  327 (341)
                      |.+|..    .+++++|+.+|+++++..+  ..++..+|.+|..    .+++++|+.+|++++++.|++...
T Consensus       189 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~  258 (273)
T 1ouv_A          189 GNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD  258 (273)
T ss_dssp             HHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence            999999    9999999999999999866  7899999999999    999999999999999999875443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.91  E-value=2.3e-23  Score=195.08  Aligned_cols=183  Identities=10%  Similarity=-0.071  Sum_probs=174.3

Q ss_pred             HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcc
Q psy16588        147 KRDATCMEAIACIGVNHFYNDQPEVALLFYRRLL--------QMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL  218 (341)
Q Consensus       147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  218 (341)
                      ..+|+++.+++..+   ...|++++|++.|++++        +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            35678888887777   78899999999999999        89999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16588        219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  298 (341)
                      ++  ..+|+++|.++...|++++|+..|+++++++|++..+++++|.++...|++++ +..|+++++++|++..+++++|
T Consensus       465 ~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          465 WR--WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred             ch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence            99  99999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        299 VISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       299 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      .++..+|++++|+..|+++++++|++..++..++.+.
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            9999999999999999999999999999998887764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.91  E-value=5.1e-24  Score=161.13  Aligned_cols=141  Identities=10%  Similarity=0.091  Sum_probs=80.5

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16588        193 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH  272 (341)
Q Consensus       193 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  272 (341)
                      ||.++...|++++|+..+++++...|+.  ...++.+|.+|+..|++++|+.+|+++++++|+++.+|+.+|.++...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~--~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQK--SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHH--HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence            4555555555666666666665555555  55555566666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHH
Q psy16588        273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNI-VKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       273 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      +++|+..|+++++++|+++.+++++|.+|...|++++|... ++++++++|+++.++..++++.
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            66666666666666666666666666666666655544433 3556666666655555555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.90  E-value=4.9e-23  Score=173.48  Aligned_cols=213  Identities=9%  Similarity=-0.009  Sum_probs=175.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------H
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------A  187 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~  187 (341)
                      ..+...|.+|...|++++|+..|++++...+.      ...++.++|.+|...|++++|+.+|++++.+.+..      .
T Consensus        38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  117 (292)
T 1qqe_A           38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (292)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34555678899999999999999999987532      25789999999999999999999999999987643      5


Q ss_pred             HHHHHHHHHHHHc-CChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH----
Q psy16588        188 ELFNNLALCCFYS-QQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL----  258 (341)
Q Consensus       188 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----  258 (341)
                      .++.++|.+|... |++++|+.+|++++++.|..    ....++.++|.++..+|++++|+.+|+++++..|++..    
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  197 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence            6899999999996 99999999999999998754    12467899999999999999999999999999887643    


Q ss_pred             ---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH-----HHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        259 ---SQNNLAVLEAREGHIERASTYLQAAAASSPYLYET-----HYNQAVISN--LAGDLQESYNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       259 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~  328 (341)
                         ++.++|.++..+|++++|+.+|+++++++|+....     +..++..+.  ..+++++|+..|++++.++|.+...+
T Consensus       198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~  277 (292)
T 1qqe_A          198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL  277 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence               67899999999999999999999999999986653     445566654  45789999999999999988776555


Q ss_pred             HHHH
Q psy16588        329 DILR  332 (341)
Q Consensus       329 ~~l~  332 (341)
                      ..+.
T Consensus       278 ~~~k  281 (292)
T 1qqe_A          278 NKIK  281 (292)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.90  E-value=1.8e-22  Score=157.65  Aligned_cols=172  Identities=15%  Similarity=0.126  Sum_probs=166.1

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ...+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            36688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      ..|++++|+.++++++...|.+  ..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPIN--FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCchh
Q psy16588        279 YLQAAAASSPYLYE  292 (341)
Q Consensus       279 ~~~~al~~~p~~~~  292 (341)
                      +++++++..|++..
T Consensus       166 ~~~~~~~~~~~~~~  179 (186)
T 3as5_A          166 HFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHHCCCG
T ss_pred             HHHHHHHcCCCchh
Confidence            99999999887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.90  E-value=9.5e-24  Score=159.62  Aligned_cols=147  Identities=10%  Similarity=0.049  Sum_probs=137.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC
Q psy16588        158 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS  237 (341)
Q Consensus       158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g  237 (341)
                      .||.++...|++++|+..+++++...|+++..++.+|.+|+..|++++|+.+|+++++++|++  +.+|+.+|.++...|
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYELEE   79 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC
Confidence            478899999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16588        238 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY-LQAAAASSPYLYETHYNQAVISNLAGD  306 (341)
Q Consensus       238 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~g~  306 (341)
                      ++++|+..|+++++++|+++.+++++|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999999887765 599999999999999999999988875

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.90  E-value=4.3e-23  Score=182.12  Aligned_cols=201  Identities=17%  Similarity=0.188  Sum_probs=113.8

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCcHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM----EAIACIGVNHFYNDQPEVALLFYRRLLQM------GLYNAEL  189 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~  189 (341)
                      ..++.+|..+...|++++|+.+|+++++..|++.    .++..+|.+|...|++++|+.+|++++..      .+....+
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            3444555666666666666666666666665554    34556666666666666666666666554      3444555


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhh------ccccchHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSL------ALNENAADVWYNISHVAIGISD-----------------TRLAIQCL  246 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~  246 (341)
                      +..+|.+|...|++++|+.+|++++.+      .+..  ..++..+|.++...|+                 +++|+.++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE--GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH--HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH--HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            666666666666666666666666555      2222  4555566666666666                 56666666


Q ss_pred             HHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHcCCHHHHHHHH
Q psy16588        247 HLALSID------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE------THYNQAVISNLAGDLQESYNIV  314 (341)
Q Consensus       247 ~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~  314 (341)
                      ++++++.      +....++..+|.++...|++++|+.+|++++++.+....      ++..+|.+|...|++++|+.+|
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            5555442      122335555566666666666666666666555443322      5555566666666666666666


Q ss_pred             HHHHhcCC
Q psy16588        315 KKSLDLHP  322 (341)
Q Consensus       315 ~~al~~~p  322 (341)
                      ++++.+.+
T Consensus       287 ~~al~~~~  294 (411)
T 4a1s_A          287 KRTLALAV  294 (411)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65555544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=8.4e-22  Score=177.04  Aligned_cols=210  Identities=15%  Similarity=0.028  Sum_probs=165.8

Q ss_pred             CCchhHhhhcHHHHHHH--cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCcHHH
Q psy16588        115 GPFIQVSRLNLAKIFEG--LNNMPMSVKYYKLILKRDATCMEAIACIGVNHF---YNDQPEVALLFYRRLLQMGLYNAEL  189 (341)
Q Consensus       115 ~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p~~~~~  189 (341)
                      ++.....+.++|..+..  .+++++|+.+|+++++.+|++++++..++.++.   ..++.++|++.|+++++++|++..+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~  211 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL  211 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence            33334566666665554  457889999999999999999999888888755   4567788899999999999998888


Q ss_pred             HHHHHHHHHH----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        190 FNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       190 ~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      +..+|..+..    .+++++|+.++++++..+|..  ..++.++|.+|...|++++|+..|+++++.+|++..++..+|.
T Consensus       212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  289 (472)
T 4g1t_A          212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC  289 (472)
T ss_dssp             HHHHHHHHHHCC------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            8888876654    467788899999999888888  8888899999999999999999999999999988888888888


Q ss_pred             HHHHh-------------------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        266 LEARE-------------------GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       266 ~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      +|...                   +.+++|+..|+++++++|.+..++..+|.++...|++++|+.+|++++.+.|++..
T Consensus       290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~  369 (472)
T 4g1t_A          290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA  369 (472)
T ss_dssp             HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence            77543                   34667888888888888888888888888888888888888888888888776654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=1.9e-22  Score=167.96  Aligned_cols=205  Identities=14%  Similarity=-0.031  Sum_probs=183.2

Q ss_pred             HHcCCchHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhH
Q psy16588        130 EGLNNMPMSVKYYKLILKRD----ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM  205 (341)
Q Consensus       130 ~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  205 (341)
                      ...|++++|+..|+++++..    |.++.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            34688999999999999973    45678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      |+.+|++++..+|.+  ..++..+|.++...|++++|+..|+++++.+|++......++.. ...|++++|+..+++++.
T Consensus        96 A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           96 AYEAFDSVLELDPTY--NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccc--cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHh
Confidence            999999999999999  99999999999999999999999999999999998766666544 677999999999999999


Q ss_pred             hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHh
Q psy16588        286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH----SYSWDILRKLEQYF  338 (341)
Q Consensus       286 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~  338 (341)
                      ..|.+...+ .++.++...++.++|+..+++++...|..    ..++..++.+....
T Consensus       173 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  228 (275)
T 1xnf_A          173 KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL  228 (275)
T ss_dssp             HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence            999876665 47888888999999999999999887753    56777777766544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.90  E-value=1e-22  Score=162.75  Aligned_cols=177  Identities=15%  Similarity=0.076  Sum_probs=154.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHcC
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIAC----------------IGVNHFYNDQPEVALLFYRRLLQMG  183 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~~  183 (341)
                      ..++..|..+...|++++|+..|+++++.+|+++.+++.                +|.+|...|++++|+..|+++++.+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            556778999999999999999999999999999999999                9999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCHHHHH
Q psy16588        184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISD--TRLAIQCLHLALSIDSSHGLSQN  261 (341)
Q Consensus       184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~  261 (341)
                      |++..+++.+|.++...|++++|+.+|+++++++|++  ..+++++|.+|...|+  ...+...+++++...|. ..+++
T Consensus        85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~  161 (208)
T 3urz_A           85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY  161 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence            9999999999999999999999999999999999999  9999999999987654  45677788887654332 34678


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                      .+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus       162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i  199 (208)
T 3urz_A          162 RDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence            89999999999999999999999999974 333344443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.8e-22  Score=177.36  Aligned_cols=204  Identities=18%  Similarity=0.141  Sum_probs=103.8

Q ss_pred             hhhcHHHHHHHcCCchHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------HH
Q psy16588        121 SRLNLAKIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AE  188 (341)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~  188 (341)
                      .+..+|.++...|++++|+.++++++..      .|....++..+|.++...|++++|+.++++++...+..      ..
T Consensus        49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  128 (406)
T 3sf4_A           49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR  128 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence            4445555555555555555555555443      12223445555555555555555555555555443322      23


Q ss_pred             HHHHHHHHHHHcCC--------------------hhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHH
Q psy16588        189 LFNNLALCCFYSQQ--------------------YDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQ  244 (341)
Q Consensus       189 ~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~  244 (341)
                      ++..+|.++...|+                    +++|+.++++++.+....    ....++..+|.++...|++++|+.
T Consensus       129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  208 (406)
T 3sf4_A          129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI  208 (406)
T ss_dssp             HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            45555555555555                    555555555555442111    113445555555555555555555


Q ss_pred             HHHHHHhcCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHH
Q psy16588        245 CLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYN  312 (341)
Q Consensus       245 ~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~  312 (341)
                      ++++++++.+...      .++..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.
T Consensus       209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  288 (406)
T 3sf4_A          209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  288 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            5555555433221      245555555555555555555555555544332      3345555555555555555555


Q ss_pred             HHHHHHhcCCCC
Q psy16588        313 IVKKSLDLHPGH  324 (341)
Q Consensus       313 ~~~~al~~~p~~  324 (341)
                      +|++++.+.+..
T Consensus       289 ~~~~a~~~~~~~  300 (406)
T 3sf4_A          289 YHLKHLAIAQEL  300 (406)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            555555555555

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.90  E-value=2.7e-22  Score=167.35  Aligned_cols=190  Identities=17%  Similarity=0.143  Sum_probs=161.0

Q ss_pred             HHcCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCcHHHHHHH
Q psy16588        130 EGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAELFNNL  193 (341)
Q Consensus       130 ~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l  193 (341)
                      ...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++..        .|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3477888888888888773        2556778889999999999999999999999876        35667788999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhh--------ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCH
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSL--------ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI--------DSSHG  257 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~  257 (341)
                      |.++...|++++|+.+|++++..        +|..  ..++.++|.++...|++++|+.+|+++++.        .|...
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV--AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            99999999999999999999988        3555  788999999999999999999999999988        66667


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------------------------------------------C
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASS-------------------------------------------------P  288 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------------p  288 (341)
                      .++..+|.++...|++++|+.+|++++++.                                                 |
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP  249 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence            888999999999999999999999998752                                                 3


Q ss_pred             CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        289 YLYETHYNQAVISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                      ....++..+|.+|..+|++++|+.+|++++++.
T Consensus       250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            344588899999999999999999999999763

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.89  E-value=1.8e-21  Score=157.49  Aligned_cols=189  Identities=7%  Similarity=-0.052  Sum_probs=141.5

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH---HHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE---LFNNL  193 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l  193 (341)
                      ..++.+|..++..|++++|+..|++++...|.+   ..+++.+|.+|...|++++|+..|+++++.+|++..   +++.+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            567788888888888888888888888888765   467888888888888888888888888888887754   77888


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH--------------
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS--------------  259 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------  259 (341)
                      |.++...+..                .  ...+..++.++...|++++|+..|+++++..|++..+              
T Consensus        85 g~~~~~~~~~----------------~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~  146 (225)
T 2yhc_A           85 GLTNMALDDS----------------A--LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL  146 (225)
T ss_dssp             HHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhh----------------h--hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence            8888764310                1  1222233333444455555555555555555554432              


Q ss_pred             ---HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        260 ---QNNLAVLEAREGHIERASTYLQAAAASSPYLY---ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       260 ---~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                         ...+|.+|...|++++|+..|+++++..|+++   .++..+|.++.++|++++|+..++++....|++.+
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence               25789999999999999999999999999876   57999999999999999999999999999888754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.89  E-value=9.6e-23  Score=179.85  Aligned_cols=227  Identities=15%  Similarity=0.106  Sum_probs=175.1

Q ss_pred             cCCCCCc-hhHhhhcHHHHHHHcCCchHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q psy16588        111 SQPDGPF-IQVSRLNLAKIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-  182 (341)
Q Consensus       111 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-  182 (341)
                      ..|+++. ....+..+|.++...|++++|+.+|++++..      .+....++..+|.+|...|++++|+.+|++++.. 
T Consensus        77 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A           77 AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3445442 2246778888999999999999999988877      4556778888999999999999999999988887 


Q ss_pred             -----CCCcHHHHHHHHHHHHHcCC-----------------hhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhc
Q psy16588        183 -----GLYNAELFNNLALCCFYSQQ-----------------YDMVVTCFERALSLALNE----NAADVWYNISHVAIGI  236 (341)
Q Consensus       183 -----~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~  236 (341)
                           .+....++..+|.++...|+                 +++|+.++++++.+.+..    ....++..+|.++...
T Consensus       157 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  236 (411)
T 4a1s_A          157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL  236 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence                 45566788888999998888                 888888888888764221    2256888888889889


Q ss_pred             CCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHc
Q psy16588        237 SDTRLAIQCLHLALSIDSSHG------LSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLA  304 (341)
Q Consensus       237 g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~  304 (341)
                      |++++|+.+|++++++.+...      .++..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++...
T Consensus       237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  316 (411)
T 4a1s_A          237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL  316 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            999999999988888765433      378888888888899999999888888876643      45778888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q psy16588        305 GDLQESYNIVKKSLDLHPGH------SYSWDILRKLEQY  337 (341)
Q Consensus       305 g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~  337 (341)
                      |++++|+.+|++++.+.++.      ..++..++.+...
T Consensus       317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  355 (411)
T 4a1s_A          317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA  355 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence            89888888888888775433      2355555555443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.89  E-value=4.5e-22  Score=170.00  Aligned_cols=216  Identities=16%  Similarity=0.113  Sum_probs=126.5

Q ss_pred             cccCCCCCch-hHhhhcHHHHHHHcCCchHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy16588        109 MLSQPDGPFI-QVSRLNLAKIFEGLNNMPMSVKYYKLILKR------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ  181 (341)
Q Consensus       109 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  181 (341)
                      +...|.++.. ...+..+|.++...|++++|+.++++++..      .+....++..+|.++...|++++|+.++++++.
T Consensus        32 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  111 (338)
T 3ro2_A           32 VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD  111 (338)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3344444321 244556666666666666666666666554      223345566666666666666666666666665


Q ss_pred             cCCCc------HHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHhhcccc----chHHHHHHHHH
Q psy16588        182 MGLYN------AELFNNLALCCFYSQQ--------------------YDMVVTCFERALSLALNE----NAADVWYNISH  231 (341)
Q Consensus       182 ~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~~~~~----~~~~~~~~la~  231 (341)
                      ..+..      ..++..+|.++...|+                    +++|+.++++++.+.+..    ....++..+|.
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  191 (338)
T 3ro2_A          112 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGN  191 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            53322      2356666666666666                    666666666665542111    11445666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHH
Q psy16588        232 VAIGISDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAV  299 (341)
Q Consensus       232 ~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~  299 (341)
                      ++...|++++|+.+++++++..+..      ..++..+|.++...|++++|+.++++++.+.+..      ..++..+|.
T Consensus       192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  271 (338)
T 3ro2_A          192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN  271 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence            6666666666666666666554322      2256666666666666666666666666654433      345566666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        300 ISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       300 ~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      ++...|++++|+.++++++.+.+..
T Consensus       272 ~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          272 TYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            6666666666666666666666655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.89  E-value=2.9e-22  Score=176.13  Aligned_cols=265  Identities=15%  Similarity=0.110  Sum_probs=210.9

Q ss_pred             CCCchHhhhcccccccccCCccch--hHhhhhhhhhh-------------------cccCCCCCchhHhhhcHHHHHHHc
Q psy16588         74 RGGTLEQSLKTPRTAKSARPLTSQ--AARTIRLGTAS-------------------MLSQPDGPFIQVSRLNLAKIFEGL  132 (341)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~~~~~~~  132 (341)
                      ..|.+++|+..++.+....|....  ......+|...                   .....+.+.....+..+|.++...
T Consensus        21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  100 (406)
T 3sf4_A           21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL  100 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence            566778888877665554444321  11122223211                   112233444457788999999999


Q ss_pred             CCchHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----
Q psy16588        133 NNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQ--------------------PEVALLFYRRLLQM----  182 (341)
Q Consensus       133 g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~----  182 (341)
                      |++++|+.++++++...+..      ..++..+|.+|...|+                    +++|+.+|++++..    
T Consensus       101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~  180 (406)
T 3sf4_A          101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL  180 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999876542      5588999999999999                    99999999999876    


Q ss_pred             --CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy16588        183 --GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH  256 (341)
Q Consensus       183 --~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  256 (341)
                        .+....++..+|.++...|++++|+.++++++.+.+..    ....++..+|.++...|++++|+.+|++++.+.+..
T Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence              34456789999999999999999999999999997665    224489999999999999999999999999887655


Q ss_pred             ------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        257 ------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       257 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                            ..++..+|.++...|++++|+.+|++++++.+..      ..++..+|.+|...|++++|+.+|++++++.+..
T Consensus       261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  340 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence                  6789999999999999999999999999886543      4588899999999999999999999999999888


Q ss_pred             H------HHHHHHHHHHHHh
Q psy16588        325 S------YSWDILRKLEQYF  338 (341)
Q Consensus       325 ~------~~~~~l~~~~~~~  338 (341)
                      .      .++..++.+...+
T Consensus       341 ~~~~~~~~~~~~l~~~~~~~  360 (406)
T 3sf4_A          341 GDKSGELTARLNLSDLQMVL  360 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHh
Confidence            3      3455555555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.89  E-value=4.3e-21  Score=160.61  Aligned_cols=229  Identities=10%  Similarity=0.020  Sum_probs=209.8

Q ss_pred             hhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcC--CchHHHHHHHHHHHhCCCCHHHHHHHHHHH----Hhc---CChH
Q psy16588        100 RTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLN--NMPMSVKYYKLILKRDATCMEAIACIGVNH----FYN---DQPE  170 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~----~~~---~~~~  170 (341)
                      +.+.+-...+..+|++.   .+|...+.++...|  ++++++..+..++..+|++..+|+..+.++    ...   ++++
T Consensus        51 ~aL~~t~~~L~~nP~~~---taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           51 RALHITELGINELASHY---TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHCTTCH---HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHCcHHH---HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            45566667788889888   88999999999999  999999999999999999999999999999    666   7899


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh--HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC------HHHH
Q psy16588        171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD--MVVTCFERALSLALNENAADVWYNISHVAIGISD------TRLA  242 (341)
Q Consensus       171 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~------~~~A  242 (341)
                      +++.++.++++.+|.+..+|...+.++...|.++  +++++++++++.+|.+  ..+|...+.++...++      ++++
T Consensus       128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccchhhhHHHH
Confidence            9999999999999999999999999999999999  9999999999999999  9999999999999988      9999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHhC---CCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIER-ASTYLQAAAASS---PYLYETHYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       243 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                      ++++++++..+|.+..+|+.++.++...|+..+ ...++.+++.+.   +.++.++..++.++.+.|+.++|+++|+++.
T Consensus       206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~  285 (306)
T 3dra_A          206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK  285 (306)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999998555 555777777665   7788999999999999999999999999999


Q ss_pred             h-cCCCCHHHHHHHHH
Q psy16588        319 D-LHPGHSYSWDILRK  333 (341)
Q Consensus       319 ~-~~p~~~~~~~~l~~  333 (341)
                      + .+|.....|.....
T Consensus       286 ~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          286 SKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HTTCGGGHHHHHHHHH
T ss_pred             hccChHHHHHHHHHHh
Confidence            6 89999999877654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.88  E-value=2.2e-21  Score=163.41  Aligned_cols=181  Identities=13%  Similarity=0.047  Sum_probs=154.2

Q ss_pred             CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCChhHHH
Q psy16588        134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NAELFNNLALCCFYSQQYDMVV  207 (341)
Q Consensus       134 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~  207 (341)
                      ++++|+..|+++              |.+|...|++++|+.+|++++.+.+.      ...++.++|.+|...|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            488888888887              56788999999999999999987432      2678999999999999999999


Q ss_pred             HHHHHHHhhcccc----chHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHH
Q psy16588        208 TCFERALSLALNE----NAADVWYNISHVAIGI-SDTRLAIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       208 ~~~~~al~~~~~~----~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A  276 (341)
                      .+|++++.+.+..    ....++.++|.+|... |++++|+.+|++++++.|..      ..++.++|.++..+|++++|
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999999998754    1256899999999996 99999999999999998754      56789999999999999999


Q ss_pred             HHHHHHHHHhCCCchh-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        277 STYLQAAAASSPYLYE-------THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  328 (341)
                      +.+|++++++.|++..       ++.++|.++..+|++++|+.+|++++.++|++....
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  236 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence            9999999999987654       578999999999999999999999999999876643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.88  E-value=3.9e-22  Score=170.39  Aligned_cols=207  Identities=15%  Similarity=0.124  Sum_probs=137.5

Q ss_pred             hhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------hHH
Q psy16588        118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQ--------------------PEV  171 (341)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~--------------------~~~  171 (341)
                      ....+..+|.++...|++++|+..++++++..+..      ..++..+|.++...|+                    +++
T Consensus        82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (338)
T 3ro2_A           82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA  161 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence            34556667777777777777777777777654432      3366677777777777                    777


Q ss_pred             HHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHH
Q psy16588        172 ALLFYRRLLQM------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRL  241 (341)
Q Consensus       172 A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~  241 (341)
                      |+.++++++..      .+....++..+|.++...|++++|+.++++++...+..    ....++..+|.++...|++++
T Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  241 (338)
T 3ro2_A          162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  241 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence            77777776654      22334567777777777777777777777777765443    123367777777777777777


Q ss_pred             HHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHH
Q psy16588        242 AIQCLHLALSIDSSH------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQE  309 (341)
Q Consensus       242 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~  309 (341)
                      |+.++++++...+..      ..++..+|.++...|++++|+.++++++.+.+..      ..++..+|.++...|++++
T Consensus       242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  321 (338)
T 3ro2_A          242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ  321 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            777777777665443      5566777777777777777777777777664432      2366677777777777777


Q ss_pred             HHHHHHHHHhcCCCC
Q psy16588        310 SYNIVKKSLDLHPGH  324 (341)
Q Consensus       310 A~~~~~~al~~~p~~  324 (341)
                      |..+|++++++.+..
T Consensus       322 A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          322 AMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhh
Confidence            777777777776543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.88  E-value=1.3e-21  Score=171.17  Aligned_cols=166  Identities=17%  Similarity=0.133  Sum_probs=144.5

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------CcHH
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKR---DAT---CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL-------YNAE  188 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~  188 (341)
                      ++..|..+...|++++|+.+|++++..   .++   ...+++.+|.+|...|++++|+.++++++.+.+       ....
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            344889999999999999999999986   222   467899999999999999999999999998743       3356


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-CCCHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALS-----ID-SSHGL  258 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~  258 (341)
                      ++..+|.+|...|++++|+.+|++++.+.+..    ....++.++|.+|...|++++|+.+|+++++     .+ |....
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            89999999999999999999999999886544    2246899999999999999999999999998     45 77788


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      ++.++|.++...|++++|+.++++++++.
T Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          266 AYFLITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998863

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.88  E-value=3.2e-21  Score=141.00  Aligned_cols=120  Identities=12%  Similarity=0.039  Sum_probs=89.6

Q ss_pred             HHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        213 ALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       213 al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      +..++|+.  ...+.++|..++..|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+..|+++++++|++..
T Consensus         5 ~a~inP~~--a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            5 LAYINPEL--AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             --CCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            34456666  7777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      +|+++|.++..+|++++|+..|+++++++|++.+++..++.+
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            777777777777777777777777777777777777666654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.87  E-value=7e-21  Score=154.04  Aligned_cols=167  Identities=14%  Similarity=0.054  Sum_probs=128.2

Q ss_pred             hhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhc-----------------
Q psy16588        107 ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCME---AIACIGVNHFYN-----------------  166 (341)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~la~~~~~~-----------------  166 (341)
                      ..+...|.+++...+++.+|.++...|++++|+..|+++++.+|++..   +++.+|.++...                 
T Consensus        29 ~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  108 (225)
T 2yhc_A           29 ALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRD  108 (225)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------C
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence            345667888877789999999999999999999999999999998764   789999999864                 


Q ss_pred             -CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHH
Q psy16588        167 -DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC  245 (341)
Q Consensus       167 -~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  245 (341)
                       |++++|+..|+++++..|++..++..+..+..                 +....  ......+|.+|...|++++|+..
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~-----------------~~~~~--~~~~~~~a~~~~~~~~~~~A~~~  169 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF-----------------LKDRL--AKYEYSVAEYYTERGAWVAVVNR  169 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH-----------------HHHHH--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH-----------------HHHHH--HHHHHHHHHHHHHcCcHHHHHHH
Confidence             45555555555555555555433221111000                 00011  23346789999999999999999


Q ss_pred             HHHHHhcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        246 LHLALSIDSSHG---LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       246 ~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      |+++++..|+++   .++..+|.++.++|++++|+..++++....|++..
T Consensus       170 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          170 VEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence            999999999886   67999999999999999999999999998887654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.87  E-value=9.2e-21  Score=159.07  Aligned_cols=170  Identities=13%  Similarity=-0.038  Sum_probs=161.9

Q ss_pred             hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16588        148 RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  227 (341)
Q Consensus       148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  227 (341)
                      ..|.+.+.++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+.  ...+.
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~  189 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT--RYQGL  189 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--HHHHH
T ss_pred             HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--HHHHH
Confidence            3588899999999999999999999999999999999999999999999999999999999999999999977  77778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcC
Q psy16588        228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLAG  305 (341)
Q Consensus       228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g  305 (341)
                      ..+..+...++.++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++.+|++  ..++.+++.++...|
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            888888899999999999999999999999999999999999999999999999999999998  789999999999999


Q ss_pred             CHHHHHHHHHHHHh
Q psy16588        306 DLQESYNIVKKSLD  319 (341)
Q Consensus       306 ~~~~A~~~~~~al~  319 (341)
                      +.++|...|++++.
T Consensus       270 ~~~~a~~~~r~al~  283 (287)
T 3qou_A          270 TGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            99999999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.87  E-value=9e-22  Score=153.00  Aligned_cols=161  Identities=12%  Similarity=0.004  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q psy16588        155 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI  234 (341)
Q Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~  234 (341)
                      .++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| +  +..+..++.+..
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~~~~~~~~~~~~   84 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--NSYKSLIAKLEL   84 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--hHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555555555555555555555555 4  333333332221


Q ss_pred             -hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcCCHHHHH
Q psy16588        235 -GISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL--YETHYNQAVISNLAGDLQESY  311 (341)
Q Consensus       235 -~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~  311 (341)
                       ..++..+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  ..++.+++.++...|+.++|+
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence             11222335555666666666666666666666666666666666666666665543  335556666666666666666


Q ss_pred             HHHHHHH
Q psy16588        312 NIVKKSL  318 (341)
Q Consensus       312 ~~~~~al  318 (341)
                      ..|++++
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=3.7e-21  Score=140.70  Aligned_cols=121  Identities=13%  Similarity=0.019  Sum_probs=94.6

Q ss_pred             HHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        179 LLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL  258 (341)
Q Consensus       179 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  258 (341)
                      +..++|+.+..+.++|..++..|+|++|+.+|+++++++|.+  ..+|+++|.++..+|++++|+..|+++++++|++..
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            345677777777788888888888888888888888888877  778888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVIS  301 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  301 (341)
                      +|+++|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            8888888888888888888888888888888877777777653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.87  E-value=2.4e-21  Score=169.50  Aligned_cols=206  Identities=13%  Similarity=0.110  Sum_probs=175.3

Q ss_pred             CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q psy16588        114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT-------CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN  186 (341)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  186 (341)
                      +++.....+..+|.++...|++++|+.+++++++..+.       ...++..+|.+|...|++++|+.+|++++...+..
T Consensus       138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  217 (383)
T 3ulq_A          138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE  217 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence            33444578999999999999999999999999987443       34578999999999999999999999999875433


Q ss_pred             ------HHHHHHHHHHHHHcCChhHHHHHHHHHHhh-----c-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q psy16588        187 ------AELFNNLALCCFYSQQYDMVVTCFERALSL-----A-LNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-  253 (341)
Q Consensus       187 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  253 (341)
                            ..++.++|.+|...|++++|+.+|++++.+     + |..  ..++.++|.++...|++++|+.++++++++. 
T Consensus       218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL--PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                  358999999999999999999999999994     4 555  8899999999999999999999999999874 


Q ss_pred             ----CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        254 ----SSHGLSQNNLAVLEAREGH---IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       254 ----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                          +.....+..+|.++...|+   +++|+..+++. ...+....++..+|.+|...|++++|..+|++++.+..
T Consensus       296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          296 KAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                3333446779999999999   88888888776 33334455888999999999999999999999998754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.86  E-value=9.8e-21  Score=174.20  Aligned_cols=165  Identities=12%  Similarity=0.024  Sum_probs=135.2

Q ss_pred             cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q psy16588        132 LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE  211 (341)
Q Consensus       132 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  211 (341)
                      .|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCC
Q psy16588        212 RALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE---GHIERASTYLQAAAASSP  288 (341)
Q Consensus       212 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p  288 (341)
                      ++++.+|++  ..+++++|.++...|++++|++.|+++++.+|++..++.++|.++...   |++++|+..|+++++.+|
T Consensus        82 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A           82 QASDAAPEH--PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence            999999998  999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             CchhHHHHHH
Q psy16588        289 YLYETHYNQA  298 (341)
Q Consensus       289 ~~~~~~~~l~  298 (341)
                      .+...+..++
T Consensus       160 ~~~~~~~~l~  169 (568)
T 2vsy_A          160 GAVEPFAFLS  169 (568)
T ss_dssp             CCSCHHHHTT
T ss_pred             cccChHHHhC
Confidence            8888877766

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.86  E-value=1.9e-20  Score=163.57  Aligned_cols=200  Identities=14%  Similarity=0.075  Sum_probs=166.2

Q ss_pred             hhhcHHHHHHHcCCchHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------cH
Q psy16588        121 SRLNLAKIFEGLNNMPMSVKYYKLILKRDA------TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-------NA  187 (341)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~  187 (341)
                      .++..|..+...|++++|+..|++++...+      ....+++.+|.+|...|++++|+.++++++...+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            466788999999999999999999997632      24678899999999999999999999999986432       35


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALS-----IDSSHGL  258 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~  258 (341)
                      .++..+|.++...|++++|+.+|++++.+.+..    ....++.++|.+|...|++++|+.+|+++++     .+|....
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            678899999999999999999999999975422    2367899999999999999999999999999     7788888


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----ch------------------------------------hHHHHH
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPY-----LY------------------------------------ETHYNQ  297 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~------------------------------------~~~~~l  297 (341)
                      ++..+|.++...|++++|+.++++++++.+.     ..                                    ..+..+
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l  342 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            9999999999999999999999999987432     11                                    134456


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        298 AVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       298 ~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      |.+|...|++++|..+|+++++.
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            77777777777777777777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.86  E-value=4.6e-21  Score=148.99  Aligned_cols=163  Identities=7%  Similarity=-0.032  Sum_probs=149.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF-  198 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-  198 (341)
                      ...+.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++...| ++..+..++.+.. 
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH   85 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999 8877766665533 


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH--GLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A  276 (341)
                      ..++..+|+..++++++.+|++  ..+++.+|.++...|++++|+..|+++++.+|+.  ..++..+|.++...|++++|
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDN--FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            3345567899999999999999  9999999999999999999999999999999875  66999999999999999999


Q ss_pred             HHHHHHHHH
Q psy16588        277 STYLQAAAA  285 (341)
Q Consensus       277 ~~~~~~al~  285 (341)
                      +..|++++.
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.86  E-value=1.3e-20  Score=173.40  Aligned_cols=163  Identities=13%  Similarity=-0.025  Sum_probs=137.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHH
Q psy16588        166 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC  245 (341)
Q Consensus       166 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  245 (341)
                      .|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++++|++  ..++.++|.++...|++++|+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCC
Q psy16588        246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA---GDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       246 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p  322 (341)
                      |+++++.+|++..++.++|.++...|++++|+..|+++++.+|++..++.+++.++..+   |++++|...|+++++.+|
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             CCHHHHHH
Q psy16588        323 GHSYSWDI  330 (341)
Q Consensus       323 ~~~~~~~~  330 (341)
                      ++...+..
T Consensus       160 ~~~~~~~~  167 (568)
T 2vsy_A          160 GAVEPFAF  167 (568)
T ss_dssp             CCSCHHHH
T ss_pred             cccChHHH
Confidence            87665543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=5e-20  Score=168.09  Aligned_cols=214  Identities=12%  Similarity=0.038  Sum_probs=190.9

Q ss_pred             hhhcccCCCCCchhHhhhcHHHHHHH-------cCCch-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCChH
Q psy16588        106 TASMLSQPDGPFIQVSRLNLAKIFEG-------LNNMP-------MSVKYYKLILK-RDATCMEAIACIGVNHFYNDQPE  170 (341)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~  170 (341)
                      ..++...|.++   ..|+.+|..+..       .|+++       +|+..|+++++ ..|++..+|..++.++...|+++
T Consensus       262 ~~al~~~p~~~---~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~  338 (530)
T 2ooe_A          262 EQCLLVLGHHP---DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE  338 (530)
T ss_dssp             HHHHHHHTTCH---HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhCCCCH---HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence            34455667776   789999988886       79987       89999999997 79999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q psy16588        171 VALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV-AIGISDTRLAIQCLHL  248 (341)
Q Consensus       171 ~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~  248 (341)
                      +|...|+++++..|.++ .+|..++.++...|++++|+.+|+++++..|..  ...+...+.+ +...|++++|...|++
T Consensus       339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~  416 (530)
T 2ooe_A          339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFEL  416 (530)
T ss_dssp             HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            99999999999999885 699999999999999999999999999998877  6666666655 3468999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        249 ALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE----THYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       249 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      +++.+|+++.+|..++.++...|++++|...|++++...|.++.    +|...+......|+.+.+..+++++++..|++
T Consensus       417 al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~  496 (530)
T 2ooe_A          417 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  496 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence            99999999999999999999999999999999999998776654    88888889999999999999999999999853

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.86  E-value=4.6e-21  Score=144.23  Aligned_cols=118  Identities=8%  Similarity=-0.048  Sum_probs=105.5

Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      +-..+++++.++|++  ..+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++...|++++|+..|+++++
T Consensus        21 ~~~~l~~al~l~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           21 SGATLKDINAIPDDM--MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             TSCCTGGGCCSCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            334567778888888  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       286 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  325 (341)
                      ++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999998875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.86  E-value=2e-19  Score=150.60  Aligned_cols=208  Identities=12%  Similarity=-0.003  Sum_probs=191.1

Q ss_pred             HHHHHcCCc-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcHHHHHHHHHHH----HH
Q psy16588        127 KIFEGLNNM-PMSVKYYKLILKRDATCMEAIACIGVNHFYND--QPEVALLFYRRLLQMGLYNAELFNNLALCC----FY  199 (341)
Q Consensus       127 ~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~  199 (341)
                      ......|.+ ++|+..+.++|..+|++..+|+..+.++...+  ++++++.++.+++..+|++..+|+..+.++    ..
T Consensus        40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~  119 (306)
T 3dra_A           40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL  119 (306)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence            344556666 58999999999999999999999999999999  999999999999999999999999999999    66


Q ss_pred             c---CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--
Q psy16588        200 S---QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR--LAIQCLHLALSIDSSHGLSQNNLAVLEAREGH--  272 (341)
Q Consensus       200 ~---~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--  272 (341)
                      .   +++++++.++.++++.+|.+  ..+|...+.++...|.++  +++++++++++.+|.+..+|+..+.+....++  
T Consensus       120 l~~~~~~~~EL~~~~~~l~~~pkn--y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~  197 (306)
T 3dra_A          120 NNNDFDPYREFDILEAMLSSDPKN--HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA  197 (306)
T ss_dssp             TTTCCCTHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence            6   78999999999999999999  999999999999999999  99999999999999999999999999999888  


Q ss_pred             ----HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q psy16588        273 ----IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE-SYNIVKKSLDLH---PGHSYSWDILRKLEQ  336 (341)
Q Consensus       273 ----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~  336 (341)
                          ++++++++++++..+|.+..+|+.++.++...|+..+ ...++++++.+.   |.++.++..++.+..
T Consensus       198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~  269 (306)
T 3dra_A          198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT  269 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence                9999999999999999999999999999999998655 555777777776   888888888887764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=1.2e-19  Score=165.53  Aligned_cols=200  Identities=11%  Similarity=-0.035  Sum_probs=181.0

Q ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHc
Q psy16588        136 PMSVKYYKLILKRDATCMEAIACIGVNHFY-------NDQPE-------VALLFYRRLLQ-MGLYNAELFNNLALCCFYS  200 (341)
Q Consensus       136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  200 (341)
                      .+++..|++++..+|.++.+|+.+|..+..       .|+++       +|+..|+++++ ..|++..+|..++.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            378899999999999999999999999986       79987       99999999997 8999999999999999999


Q ss_pred             CChhHHHHHHHHHHhhccccchH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCHHHHHH
Q psy16588        201 QQYDMVVTCFERALSLALNENAA-DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHIERAST  278 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~  278 (341)
                      |++++|..+|+++++..|.+  . .+|..++.++...|++++|+..|+++++..|.....+...+.+ +...|++++|..
T Consensus       335 g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence            99999999999999999987  5 5899999999999999999999999999999888877776666 346899999999


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHH
Q psy16588        279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY----SWDILRKLEQY  337 (341)
Q Consensus       279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~  337 (341)
                      .|+++++..|+++.+|..++.++...|+.++|..+|++++...|.++.    .|.....+...
T Consensus       413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~  475 (530)
T 2ooe_A          413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  475 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999876654    66555555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.85  E-value=5e-21  Score=156.65  Aligned_cols=208  Identities=14%  Similarity=0.038  Sum_probs=182.4

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCcH-----
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACI-------GVNHFYNDQPEVALLFYRRLLQMGLYNA-----  187 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~p~~~-----  187 (341)
                      ...+..|.-+ ..+++..|...|.+++..+|+..++|..+       +.++...++..+++..+++.+.+.|...     
T Consensus         8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~   86 (282)
T 4f3v_A            8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA   86 (282)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred             HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence            3455556655 68999999999999999999999999999       8999999999999999999999877543     


Q ss_pred             ----------------HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        188 ----------------ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       188 ----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                                      +++..++.++...|+|++|.+.|..++...|.+  . .++.+|.++++.++|++|+..|+++..
T Consensus        87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~--~-~~~~~a~l~~~~~r~~dA~~~l~~a~~  163 (282)
T 4f3v_A           87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH--L-VAWMKAVVYGAAERWTDVIDQVKSAGK  163 (282)
T ss_dssp             CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH--H-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred             cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch--H-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence                            344558899999999999999999999999988  7 999999999999999999999998877


Q ss_pred             cCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        252 IDSSH--GLSQNNLAVLEAREGHIERASTYLQAAAASS--PY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       252 ~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      ..+..  ..+++.+|.++..+|++++|+.+|++++.-.  |. ..++++++|.++.++|+.++|...|++++..+|+ ..
T Consensus       164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~  242 (282)
T 4f3v_A          164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK  242 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred             cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence            54221  4589999999999999999999999998644  54 5679999999999999999999999999999999 88


Q ss_pred             HHHHHH
Q psy16588        327 SWDILR  332 (341)
Q Consensus       327 ~~~~l~  332 (341)
                      ++..|.
T Consensus       243 ~~~aL~  248 (282)
T 4f3v_A          243 VAAALK  248 (282)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.85  E-value=1.7e-19  Score=144.37  Aligned_cols=188  Identities=12%  Similarity=0.038  Sum_probs=167.3

Q ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC----ChhHHHHHHH
Q psy16588        136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ----QYDMVVTCFE  211 (341)
Q Consensus       136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~  211 (341)
                      .+|+.+|+++.+.  .++.+++.+|.+|...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3578899999876  68999999999999999999999999999875  588999999999998 7    9999999999


Q ss_pred             HHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----hCCHHHHHHHHH
Q psy16588        212 RALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDS--SHGLSQNNLAVLEAR----EGHIERASTYLQ  281 (341)
Q Consensus       212 ~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~  281 (341)
                      ++.+  +.+  +.+++++|.+|..    .+++++|+.+|+++++..+  .++.+++++|.+|..    .+++++|+.+|+
T Consensus        78 ~A~~--~g~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           78 KAVE--AGS--KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHH--TTC--HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHH--CCC--HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            9965  467  8999999999998    8999999999999999988  358999999999999    899999999999


Q ss_pred             HHHHhCCCchhHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        282 AAAASSPYLYETHYNQAVISNLA-G-----DLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       282 ~al~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      ++++. +.++.++++||.+|... |     ++++|+.+|+++.+..  +..+...+..+.
T Consensus       154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l~  210 (212)
T 3rjv_A          154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRIS  210 (212)
T ss_dssp             HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred             HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhh
Confidence            99998 66788999999999875 3     8999999999999884  566777776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.85  E-value=1.6e-20  Score=141.43  Aligned_cols=131  Identities=9%  Similarity=-0.002  Sum_probs=102.8

Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                      ...|++++.++|.+  ...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.+
T Consensus         7 ~~~~~~al~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            7 GGTIAMLNEISSDT--LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             CCSHHHHTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHcCCHhh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34577777777777  7788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        287 SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       287 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      +|+++.+++++|.+|..+|++++|+.+|++++++.|+++........+...+.
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            88888888888888888888888888888888888877766666666555544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=3.6e-20  Score=156.75  Aligned_cols=170  Identities=21%  Similarity=0.169  Sum_probs=155.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc---
Q psy16588        149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM--------GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA---  217 (341)
Q Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---  217 (341)
                      +|....++..+|.++...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.+|++++...   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            5667888999999999999999999999999984        67778899999999999999999999999999883   


Q ss_pred             -----cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16588        218 -----LNENAADVWYNISHVAIGISDTRLAIQCLHLALSID--------SSHGLSQNNLAVLEAREGHIERASTYLQAAA  284 (341)
Q Consensus       218 -----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  284 (341)
                           +..  ..++..+|.++...|++++|+.+|+++++..        |....++..+|.++...|++++|+.+|++++
T Consensus       103 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          103 LGKDHPAV--AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HCTTCHHH--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hCCCChHH--HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                 444  8899999999999999999999999999874        5567789999999999999999999999999


Q ss_pred             Hh--------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        285 AS--------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       285 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      .+        .|....++..+|.++...|++++|+.+|+++++.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98        6666778999999999999999999999999975

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.85  E-value=4e-20  Score=155.15  Aligned_cols=164  Identities=8%  Similarity=-0.061  Sum_probs=158.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|+....+...+..+..
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~  197 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX  197 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence            77889999999999999999999999999999999999999999999999999999999999999888778888888999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH--GLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      .++.++|+..|++++..+|++  ..+++++|.++...|++++|+..|+++++.+|++  ..++..++.++...|+.++|+
T Consensus       198 ~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAENPED--AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             hcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            999999999999999999999  9999999999999999999999999999999998  889999999999999999999


Q ss_pred             HHHHHHHH
Q psy16588        278 TYLQAAAA  285 (341)
Q Consensus       278 ~~~~~al~  285 (341)
                      ..|++++.
T Consensus       276 ~~~r~al~  283 (287)
T 3qou_A          276 SXYRRQLY  283 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.85  E-value=8.5e-19  Score=147.50  Aligned_cols=203  Identities=11%  Similarity=0.033  Sum_probs=176.8

Q ss_pred             HHHHcCCch-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16588        128 IFEGLNNMP-MSVKYYKLILKRDATCMEAIACIGVNHFYNDQ----------PEVALLFYRRLLQMGLYNAELFNNLALC  196 (341)
Q Consensus       128 ~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~  196 (341)
                      .....|++. +|+..+.+++..+|++..+|+..+.++...+.          +++++.++..++..+|.+..+|+..+.+
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl  117 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  117 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            334677777 68999999999999999999999998887765          6889999999999999999999999999


Q ss_pred             HHHcCC--hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---
Q psy16588        197 CFYSQQ--YDMVVTCFERALSLALNENAADVWYNISHVAIGISD-TRLAIQCLHLALSIDSSHGLSQNNLAVLEARE---  270 (341)
Q Consensus       197 ~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---  270 (341)
                      +...++  +++++.++.++++.+|.+  ..+|...+.+....|. ++++++++.++++.+|.+..+|+.++.++...   
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dprN--y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence            999884  899999999999999999  9999999999999998 69999999999999999999999999998887   


Q ss_pred             -----------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        271 -----------GHIERASTYLQAAAASSPYLYETHYNQAVISNLA-----------GDLQESYNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       271 -----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~  328 (341)
                                 +.++++++++.+++..+|++..+|+.+..++...           +.++++++.+++++++.|++.-..
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l  275 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL  275 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence                       5688999999999999999999998776666655           468899999999999999985444


Q ss_pred             HHHH
Q psy16588        329 DILR  332 (341)
Q Consensus       329 ~~l~  332 (341)
                      ..+.
T Consensus       276 ~~~~  279 (331)
T 3dss_A          276 LTII  279 (331)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.84  E-value=3.9e-20  Score=156.87  Aligned_cols=193  Identities=17%  Similarity=0.062  Sum_probs=150.0

Q ss_pred             cCCchHHHHHHHHHHHhCCC-------C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------HHHHHHHH
Q psy16588        132 LNNMPMSVKYYKLILKRDAT-------C----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLA  194 (341)
Q Consensus       132 ~g~~~~A~~~~~~~l~~~~~-------~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la  194 (341)
                      .|++++|.++++++.+..+.       +    ...+...|.+|...|++++|+.+|.+++.+.+..      ..++.++|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666666655543221       1    1234455778888999999999999998875432      45788999


Q ss_pred             HHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q psy16588        195 LCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GLSQNNLA  264 (341)
Q Consensus       195 ~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~  264 (341)
                      .+|...|++++|+.+|++++.+.+..    ....++.++|.+|.. |++++|+.+|++++++.+..      ..++.++|
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg  162 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS  162 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            99999999999999999999886432    225678899999988 99999999999999887543      56788999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCch------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLY------ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      .++..+|++++|+.+|++++.+.+.+.      .++..++.++..+|++++|+.+|++++ ++|++..
T Consensus       163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            999999999999999999998765432      367788889999999999999999999 8887643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.84  E-value=1.7e-20  Score=141.11  Aligned_cols=116  Identities=7%  Similarity=-0.052  Sum_probs=99.0

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16588        174 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID  253 (341)
Q Consensus       174 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  253 (341)
                      ..+++++.++|++..+++.+|.+++..|++++|+.+|++++.++|.+  +.+|+++|.++...|++++|+..|+++++++
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            45667777888888888888888888888888888888888888888  8888888888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16588        254 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  291 (341)
Q Consensus       254 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  291 (341)
                      |+++.+|+++|.+|..+|++++|+..|++++++.|+..
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            88888888888888888888888888888888888654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.83  E-value=8e-22  Score=169.22  Aligned_cols=154  Identities=13%  Similarity=0.072  Sum_probs=105.6

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc-------------hHHHHHHHHHH
Q psy16588        166 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN-------------AADVWYNISHV  232 (341)
Q Consensus       166 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~la~~  232 (341)
                      ++++++|+..|++++...|....++..+|.+++..|++++|+.+|++++.+.|.+.             ...+++++|.+
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555566666666666666666666666665555540             03677777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH-H
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES-Y  311 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~  311 (341)
                      +..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| .
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777777777777777777777 4


Q ss_pred             HHHHHHHh
Q psy16588        312 NIVKKSLD  319 (341)
Q Consensus       312 ~~~~~al~  319 (341)
                      ..|++++.
T Consensus       286 ~~~~~~~~  293 (336)
T 1p5q_A          286 KLYANMFE  293 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            45666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.83  E-value=1.9e-19  Score=150.00  Aligned_cols=171  Identities=20%  Similarity=0.169  Sum_probs=153.7

Q ss_pred             CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q psy16588        114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKR--------DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM---  182 (341)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---  182 (341)
                      +++.....+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++..   
T Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33445588999999999999999999999999987        3556778999999999999999999999999987   


Q ss_pred             -----CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh--------ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16588        183 -----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSL--------ALNENAADVWYNISHVAIGISDTRLAIQCLHLA  249 (341)
Q Consensus       183 -----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  249 (341)
                           +|....++..+|.++...|++++|+.+|++++..        .|..  ..++..+|.++...|++++|+.+|+++
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV--AKTKNNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 4677889999999999999999999999999998        6666  889999999999999999999999999


Q ss_pred             HhcC-------------------------------------------------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16588        250 LSID-------------------------------------------------SSHGLSQNNLAVLEAREGHIERASTYL  280 (341)
Q Consensus       250 l~~~-------------------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~  280 (341)
                      ++..                                                 |....++..+|.+|...|++++|+.+|
T Consensus       196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  275 (283)
T 3edt_B          196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE  275 (283)
T ss_dssp             HHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9762                                                 344568899999999999999999999


Q ss_pred             HHHHHh
Q psy16588        281 QAAAAS  286 (341)
Q Consensus       281 ~~al~~  286 (341)
                      ++++++
T Consensus       276 ~~al~~  281 (283)
T 3edt_B          276 DCASRN  281 (283)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            999875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.82  E-value=1.3e-19  Score=135.54  Aligned_cols=130  Identities=11%  Similarity=-0.007  Sum_probs=97.8

Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      ..|++++..+|.+  ...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++
T Consensus         5 ~~l~~al~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDT--LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHH--HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4566677777777  77777888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       288 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      |+++.+++++|.++..+|++++|+.+|++++.+.|+++.......++...+.
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            8888888888888888888888888888888887777766666655555443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.82  E-value=8e-18  Score=141.56  Aligned_cols=227  Identities=8%  Similarity=-0.021  Sum_probs=195.7

Q ss_pred             hhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcCC----------chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-
Q psy16588        100 RTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLNN----------MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ-  168 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-  168 (341)
                      +.+.+-...+..+|++.   .+|...+.++...+.          +++++.++..++..+|.+..+|+..+.++...++ 
T Consensus        48 eaL~~t~~~L~~nP~~y---taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           48 SVLELTSQILGANPDFA---TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             HHHHHHHHHHTTCTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHCchhH---HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence            44555556677788887   778888888877665          6899999999999999999999999999999984 


Q ss_pred             -hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc----------
Q psy16588        169 -PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ-YDMVVTCFERALSLALNENAADVWYNISHVAIGI----------  236 (341)
Q Consensus       169 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~----------  236 (341)
                       +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+  ..+|...+.++...          
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l~~~~~~~~~~  202 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQLHPQPDSGPQG  202 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHSCCC------
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhhhcccccccc
Confidence             8999999999999999999999999999999998 599999999999999999  99999999999877          


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16588        237 ----SDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE-----------GHIERASTYLQAAAASSPYLYETHYNQAVIS  301 (341)
Q Consensus       237 ----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  301 (341)
                          +.++++++++.+++..+|++..+|+.+..++...           +.++++++.+++++++.|++.-.+..++.+.
T Consensus       203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~  282 (331)
T 3dss_A          203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM  282 (331)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence                5689999999999999999999998777666555           4689999999999999999855544444433


Q ss_pred             H---HcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        302 N---LAGDLQESYNIVKKSLDLHPGHSYSWDIL  331 (341)
Q Consensus       302 ~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l  331 (341)
                      .   ..|..++...++.+.++++|-....|.-+
T Consensus       283 ~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~  315 (331)
T 3dss_A          283 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  315 (331)
T ss_dssp             HHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence            2   35788899999999999999887665443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.82  E-value=8.5e-18  Score=151.83  Aligned_cols=202  Identities=14%  Similarity=0.115  Sum_probs=131.9

Q ss_pred             HhhhcHHHHHHH----cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16588        120 VSRLNLAKIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFN  191 (341)
Q Consensus       120 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~  191 (341)
                      .++..+|.+|..    .+++++|+.+|+++++.  .+..+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++
T Consensus       220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~  295 (490)
T 2xm6_A          220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQY  295 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHH
Confidence            344445555554    55555555555555543  345566666666665    56666666666666544  3556666


Q ss_pred             HHHHHHHHc-----CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        192 NLALCCFYS-----QQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS---DTRLAIQCLHLALSIDSSHGLSQNNL  263 (341)
Q Consensus       192 ~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l  263 (341)
                      .+|.+|...     +++++|+.+|+++++.  .+  ..+++++|.+|...|   ++++|+.+|+++++.  .++.+++++
T Consensus       296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~--~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L  369 (490)
T 2xm6_A          296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GD--ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNL  369 (490)
T ss_dssp             HHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CC--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            666666665     6677777777766654  33  566777777776655   667777777777765  457777777


Q ss_pred             HHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q psy16588        264 AVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPG---HSYSWDILR  332 (341)
Q Consensus       264 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~l~  332 (341)
                      |.+|..    .+++++|+.+|+++++..  ++.+++++|.+|..    .+++++|+.+|+++++..|+   ++.+...++
T Consensus       370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~  447 (490)
T 2xm6_A          370 GNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEK  447 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHH
Confidence            777777    677777777777777653  56677777777777    77778888888887777743   555555544


Q ss_pred             H
Q psy16588        333 K  333 (341)
Q Consensus       333 ~  333 (341)
                      .
T Consensus       448 ~  448 (490)
T 2xm6_A          448 K  448 (490)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.81  E-value=5.5e-17  Score=146.54  Aligned_cols=203  Identities=13%  Similarity=0.081  Sum_probs=108.8

Q ss_pred             HhhhcHHHHHHH----cCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcHHHHH
Q psy16588        120 VSRLNLAKIFEG----LNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFN  191 (341)
Q Consensus       120 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~  191 (341)
                      .+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++...  .++.+++
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~  151 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ  151 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence            344455555555    55555555555555443  245555555555554    45555555555555443  2445555


Q ss_pred             HHHHHHHH----cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        192 NLALCCFY----SQQYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLSQNNL  263 (341)
Q Consensus       192 ~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  263 (341)
                      .+|.+|..    .+++++|+.+|+++++.  .+  ..+++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+
T Consensus       152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l  225 (490)
T 2xm6_A          152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GN--VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHL  225 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC--HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            55555554    45555555555555543  23  5555555555555    55555555555555543  244555555


Q ss_pred             HHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        264 AVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       264 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      |.+|..    .+++++|+.+|+++++.  .+..+++.+|.+|..    .+++++|+.+|+++.+.  +++.++..++.+.
T Consensus       226 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y  301 (490)
T 2xm6_A          226 ADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLY  301 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence            555554    55555566555555543  334555666666665    56666666666666543  3455555555544


Q ss_pred             H
Q psy16588        336 Q  336 (341)
Q Consensus       336 ~  336 (341)
                      .
T Consensus       302 ~  302 (490)
T 2xm6_A          302 D  302 (490)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.81  E-value=2.1e-19  Score=150.21  Aligned_cols=194  Identities=15%  Similarity=0.043  Sum_probs=162.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..+..+|..+...|++++|+..|++++..+|++..+++++|.+|...|++++|+..|+++++++|++..+++.+|.++..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|++++|+..|+++++++|++  ...+........   ...++...........+.+..+...++.++  .|++++|++.
T Consensus        85 ~g~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~  157 (281)
T 2c2l_A           85 MESYDEAIANLQRAYSLAKEQ--RLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEE  157 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT--TCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHhCccc--hhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHH
Confidence            999999999999999999876  221111111111   122233333444456677788877777765  7999999999


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLA-GDLQESYNIVKKSLDL  320 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~  320 (341)
                      ++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus       158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999888888888877776 7789999999988764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.80  E-value=5.2e-19  Score=133.09  Aligned_cols=120  Identities=15%  Similarity=0.066  Sum_probs=96.8

Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        173 LLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       173 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      ...|++++..+|++...++.+|.++...|++++|+..|++++..+|.+  ..+|+.+|.++...|++++|+..|++++.+
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            345677777888888888888888888888888888888888888888  888888888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHH
Q psy16588        253 DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETH  294 (341)
Q Consensus       253 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  294 (341)
                      +|+++.+++++|.++...|++++|+..|+++++++|+++...
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            888888888888888888888888888888888877766543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.80  E-value=6.9e-18  Score=124.14  Aligned_cols=133  Identities=26%  Similarity=0.390  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA  268 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  268 (341)
                      +++.+|.++...|++++|+..+++++...|.+  ...+..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc--hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            34455555555555555555555555555555  5555555555555555555555555555555555555555555555


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        269 REGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       269 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      ..|++++|+..+++++...|.+..++..++.++...|++++|..++++++..+|+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            5555555555555555555555555555666666666666666666666555554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.80  E-value=1.8e-19  Score=154.63  Aligned_cols=154  Identities=16%  Similarity=0.191  Sum_probs=145.3

Q ss_pred             HcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHH
Q psy16588        131 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---------------AELFNNLAL  195 (341)
Q Consensus       131 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~  195 (341)
                      ..+++++|+..+++++...|.+..++..+|.+++..|++++|+..|++++.+.|.+               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            36788899999999999999999999999999999999999999999999999998               699999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16588        196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER  275 (341)
Q Consensus       196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  275 (341)
                      ++...|++++|+.+|+++++++|.+  ..+++++|.++..+|++++|+..|+++++++|++..++..++.++...|++++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNN--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHh
Q psy16588        276 A-STYLQAAAAS  286 (341)
Q Consensus       276 A-~~~~~~al~~  286 (341)
                      | ...|++++..
T Consensus       283 a~~~~~~~~~~~  294 (336)
T 1p5q_A          283 REKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            9 5577777653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.79  E-value=1.2e-17  Score=122.91  Aligned_cols=134  Identities=25%  Similarity=0.381  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA  233 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~  233 (341)
                      .+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|..  ...+..+|.++
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~   79 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHHHH
Confidence            3566677777777777777777777777777777777777777777777777777777777777776  67777777777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                      ...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            77777777777777777777777777777777777777777777777777776664

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.79  E-value=7.4e-18  Score=147.12  Aligned_cols=169  Identities=19%  Similarity=0.161  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----chH
Q psy16588        155 AIACIGVNHFYNDQPEVALLFYRRLLQMGL------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAA  223 (341)
Q Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~  223 (341)
                      .++.+|..+...|++++|+.+|++++...+      ....+++.+|.+|...|++++|+.++++++.+.+..     ...
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            567889999999999999999999998732      346789999999999999999999999999986543     236


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCchh
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSIDS------SHGLSQNNLAVLEAREGHIERASTYLQAAAA-----SSPYLYE  292 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~  292 (341)
                      .++.++|.++...|++++|+.+|++++++.+      ....++.++|.+|...|++++|+.+|++++.     .+|....
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            6889999999999999999999999998743      1246889999999999999999999999999     6777788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      ++.++|.++...|++++|+.++++++.+.+.
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.79  E-value=1.3e-18  Score=130.09  Aligned_cols=125  Identities=13%  Similarity=0.037  Sum_probs=95.6

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16588        174 LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID  253 (341)
Q Consensus       174 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  253 (341)
                      ..|++++..+|++...++.+|.+++..|++++|+..|++++..+|.+  ..+|+.+|.++...|++++|+..|++++.++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45667777777777888888888888888888888888888888887  8888888888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        254 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       254 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                      |+++.+++.+|.++...|++++|+..|+++++++|+++........+
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            88888888888888888888888888888888877776655444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.79  E-value=7.4e-19  Score=160.28  Aligned_cols=194  Identities=10%  Similarity=0.001  Sum_probs=173.3

Q ss_pred             HHHHcCCch-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16588        128 IFEGLNNMP-MSVKYYKLILKRDATCMEAIACIGVNHFYNDQ----------PEVALLFYRRLLQMGLYNAELFNNLALC  196 (341)
Q Consensus       128 ~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~  196 (341)
                      .....|++. +|+..+.+++..+|++..+|+..+.++...|+          +++++.+++++++.+|++..+|+..+.+
T Consensus        37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~  116 (567)
T 1dce_A           37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  116 (567)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            334556554 67999999999999999999999999999888          9999999999999999999999999999


Q ss_pred             HHHcC--ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---
Q psy16588        197 CFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-DTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE---  270 (341)
Q Consensus       197 ~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---  270 (341)
                      +...+  ++++++++++++++.+|.+  ..+|...+.++...| .+++++++++++++.+|.+..+|+..+.++...   
T Consensus       117 l~~l~~~~~~~el~~~~k~l~~d~~N--~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          117 LSRLPEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHcccccHHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence            99999  6799999999999999999  999999999999999 899999999999999999999999999998885   


Q ss_pred             -----------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH------------HHHHHHHHHhcCCC
Q psy16588        271 -----------GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE------------SYNIVKKSLDLHPG  323 (341)
Q Consensus       271 -----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~al~~~p~  323 (341)
                                 +.++++++++.+++.++|++..+|+.++.++...+++++            |+..|.+++.++|.
T Consensus       195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence                       568999999999999999999999999999998888665            45556666666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.78  E-value=3.5e-17  Score=146.08  Aligned_cols=187  Identities=10%  Similarity=0.039  Sum_probs=89.0

Q ss_pred             hhhcHHHHHHHcC---CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16588        121 SRLNLAKIFEGLN---NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN----DQPEVALLFYRRLLQMGLYNAELFNNL  193 (341)
Q Consensus       121 ~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l  193 (341)
                      +++.+|.+|...|   ++++|+.+|+++.+..+.....++.+|.+|...    +++++|+.+|+++.   |.++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            3444444444444   455555555555555544444445555554433    44555555555544   4444555555


Q ss_pred             HHH-H--HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        194 ALC-C--FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-----DTRLAIQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       194 a~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      |.+ +  ...+++++|+.+|+++.+.  .+  +.+++++|.+|. .|     ++++|+.+|+++.   +.++.+++++|.
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~--~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~  326 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQ--PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQ  326 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHC--CC--HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence            554 2  2344555555555554433  23  445555555544 23     4555555555544   444555555554


Q ss_pred             HHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q psy16588        266 LEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDL  320 (341)
Q Consensus       266 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  320 (341)
                      +|..    ..++++|+.+|+++.+  +.++.+.++||.+|..    ..++.+|..+|+++.+.
T Consensus       327 ~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          327 IYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             HHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             HHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence            4443    2245555555555443  2334444555555443    23455555555555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.78  E-value=4.8e-17  Score=141.55  Aligned_cols=200  Identities=10%  Similarity=-0.025  Sum_probs=84.6

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCcH
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQMG--------LYNA  187 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~  187 (341)
                      +..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.++++++...        |...
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  135 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE  135 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence            3344444444455555555544444432221      1123344444444455555555544444432        1223


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHH-
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--HGLSQN-  261 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~-  261 (341)
                      .++..+|.++...|++++|..++++++...+..   ....++..+|.++...|++++|..++++++.+.+.  ....+. 
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~  215 (373)
T 1hz4_A          136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS  215 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence            334444444444455555555555444443321   01234444444444445555555555444443211  100110 


Q ss_pred             ----HHHHHHHHhCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy16588        262 ----NLAVLEAREGHIERASTYLQAAAASSPYL----YETHYNQAVISNLAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       262 ----~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  321 (341)
                          .++.++...|++++|...+++++...+..    ...+..++.++...|++++|...+++++...
T Consensus       216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  283 (373)
T 1hz4_A          216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA  283 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                12223444455555555544444433321    1123344444445555555555555544443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.78  E-value=3.4e-17  Score=146.13  Aligned_cols=201  Identities=11%  Similarity=0.034  Sum_probs=175.1

Q ss_pred             HhhhcHHHHHHHcCCchHHHHH----HHHHHHhCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCcHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKY----YKLILKRDATCMEAIACIGVNHFYND---QPEVALLFYRRLLQMGLYNAELFNN  192 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~----~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~  192 (341)
                      .+++.+|.+|...+.++++...    ++.+...+   +.+++.+|.+|...|   ++++|+.+|+++...++.....+++
T Consensus       142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~  218 (452)
T 3e4b_A          142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDS  218 (452)
T ss_dssp             THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7899999999999977666555    44444444   449999999999999   9999999999999999999999999


Q ss_pred             HHHHHHHc----CChhHHHHHHHHHHhhccccchHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        193 LALCCFYS----QQYDMVVTCFERALSLALNENAADVWYNISHV-A--IGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       193 la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      +|.+|...    +++++|+.+|+++.   |.+  +.+++++|.+ +  ...+++++|+.+|+++.+.  .++.+++++|.
T Consensus       219 Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~--~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~  291 (452)
T 3e4b_A          219 VARVLGDATLGTPDEKTAQALLEKIA---PGY--PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK  291 (452)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHG---GGS--THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHc---CCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            99999776    79999999999998   788  9999999999 5  5789999999999999865  48999999999


Q ss_pred             HHHHhC-----CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        266 LEAREG-----HIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       266 ~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      +|. .|     ++++|+.+|+++.   +.++.++++||.+|..    ..++++|+.+|+++.+.  .++.+.+.++.+..
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFS  365 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHH
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            998 66     9999999999998   8899999999999887    44999999999999874  55677777776653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=6.9e-18  Score=123.28  Aligned_cols=116  Identities=11%  Similarity=-0.034  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      ...+..+|..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++..+++.+|.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            66778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHh
Q psy16588        303 LAGDLQESYNIVKKSLDLH------PGHSYSWDILRKLEQYF  338 (341)
Q Consensus       303 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~  338 (341)
                      .+|++++|+..|++++.++      |++..++..+..+.+.+
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            8888888888888888888      88888777777776543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.78  E-value=4e-17  Score=137.91  Aligned_cols=229  Identities=8%  Similarity=-0.020  Sum_probs=188.3

Q ss_pred             hhhhhhhhhcccCCCCCchhHhhhcHHHHHHHcC-CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C-ChHHHHHHH
Q psy16588        100 RTIRLGTASMLSQPDGPFIQVSRLNLAKIFEGLN-NMPMSVKYYKLILKRDATCMEAIACIGVNHFYN-D-QPEVALLFY  176 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~-~~~~A~~~~  176 (341)
                      +.+.+-...+..+|++.   .+|...+.++...| .+++++..+..++..+|++..+|+..+.++... + ++++++.++
T Consensus        72 ~AL~lt~~~L~~nP~~y---taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           72 RALELTEIIVRMNPAHY---TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             HHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            45556666777888888   78888888888888 599999999999999999999999999999887 7 889999999


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCChh--------HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCC-------HHH
Q psy16588        177 RRLLQMGLYNAELFNNLALCCFYSQQYD--------MVVTCFERALSLALNENAADVWYNISHVAIGISD-------TRL  241 (341)
Q Consensus       177 ~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~-------~~~  241 (341)
                      .++++.+|.+..+|...+.++...+.++        +++++++++++.+|.+  ..+|...+.++...++       +++
T Consensus       149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N--~SAW~~R~~lL~~l~~~~~~~~~~~e  226 (349)
T 3q7a_A          149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN--NSAWGWRWYLRVSRPGAETSSRSLQD  226 (349)
T ss_dssp             HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccccchHHHHH
Confidence            9999999999999999999998888888        9999999999999999  9999999999988887       789


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHHhC------CCchhHHH
Q psy16588        242 AIQCLHLALSIDSSHGLSQNNLAVLEAREGHI--------------------ERASTYLQAAAASS------PYLYETHY  295 (341)
Q Consensus       242 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~~~~  295 (341)
                      +++++++++..+|++..+|+.+..++...|+.                    .+-.......+...      +..+.++.
T Consensus       227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~  306 (349)
T 3q7a_A          227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE  306 (349)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence            99999999999999999999988888887764                    22222222222222      35566888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-hcCCCCHHHHHHHHH
Q psy16588        296 NQAVISNLAGDLQESYNIVKKSL-DLHPGHSYSWDILRK  333 (341)
Q Consensus       296 ~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~  333 (341)
                      .++.+|...|+.++|.++|+... +.+|-....|.....
T Consensus       307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            89999999999999999999986 678888887766543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.78  E-value=2.9e-18  Score=133.14  Aligned_cols=129  Identities=10%  Similarity=0.104  Sum_probs=65.7

Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCH--HHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL-EAREGHI--ERA  276 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~--~~A  276 (341)
                      .|++++|+..+++++..+|.+  ..+|+.+|.++...|++++|+.+|+++++.+|.+..++..+|.+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQN--SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            444555555555555555555  55555555555555555555555555555555555555555555 4455554  555


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI  330 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  330 (341)
                      +..|+++++.+|++..+++.+|.++...|++++|+.+|++++.++|++......
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  154 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL  154 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence            555555555555555555555555555555555555555555555554443333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.78  E-value=1.2e-17  Score=141.55  Aligned_cols=190  Identities=12%  Similarity=0.009  Sum_probs=157.5

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------cH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC------MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NA  187 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~  187 (341)
                      ..+...+.+|...|++++|+..|.+++...+..      ..++..+|.+|...|++++|+.+|++++.+.+.      ..
T Consensus        37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  116 (307)
T 2ifu_A           37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA  116 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            345556788999999999999999999876432      567889999999999999999999999987432      24


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------H
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------G  257 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  257 (341)
                      .++.++|.+|.. |++++|+.+|++++.+.+..    ....++.++|.++..+|++++|+.+|++++++.+.+      .
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            678999999999 99999999999999997654    225789999999999999999999999999986543      3


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHcCCHHHHHH
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE-----THYNQAVISNLAGDLQESYN  312 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~  312 (341)
                      .++..+|.++...|++++|+.+|++++ ++|....     .+..++..+ ..|+.+.+..
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            478889999999999999999999999 9987654     344555555 5677655544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.78  E-value=2e-18  Score=144.35  Aligned_cols=179  Identities=16%  Similarity=0.134  Sum_probs=147.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHH
Q psy16588        150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  229 (341)
Q Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l  229 (341)
                      |.+...++.+|..+...|++++|+..|++++..+|.+..+++++|.++...|++++|+..|+++++++|++  ..+++.+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--HHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Q psy16588        230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE  309 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  309 (341)
                      |.++...|++++|+..|+++++++|++...+........   +..++...........+.+..+...++.++  .|++++
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~  153 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERER  153 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence            999999999999999999999998866332222222222   222333333444456677778877787765  799999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        310 SYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       310 A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      |+..++++++++|++......+..+.
T Consensus       154 A~~~~~~al~~~p~~~~~~~~l~~~~  179 (281)
T 2c2l_A          154 ELEECQRNHEGHEDDGHIRAQQACIE  179 (281)
T ss_dssp             HHTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred             HHHHHHhhhccccchhhhhhHHHHHH
Confidence            99999999999999876665555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.77  E-value=9.1e-17  Score=135.70  Aligned_cols=184  Identities=8%  Similarity=-0.046  Sum_probs=169.6

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  200 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  200 (341)
                      +-.+..+....+..++|+.++.+++..+|++..+|+..+.++...| .+++++.++.+++..+|++..+|+..+.++...
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l  136 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI  136 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            3333445555566678999999999999999999999999999999 599999999999999999999999999999998


Q ss_pred             -C-ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        201 -Q-QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTR--------LAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       201 -~-~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                       + +++++++++.++++.+|.+  ..+|...+.++...|.++        +++++++++++.+|.+..+|+..+.++...
T Consensus       137 ~~~~~~~EL~~~~k~L~~dpkN--y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          137 SPQDPVSEIEYIHGSLLPDPKN--YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             CCSCCHHHHHHHHHHTSSCTTC--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             cCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence             7 9999999999999999999  999999999999888887        999999999999999999999999999998


Q ss_pred             CC-------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy16588        271 GH-------IERASTYLQAAAASSPYLYETHYNQAVISNLAGDL  307 (341)
Q Consensus       271 g~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  307 (341)
                      ++       ++++++++++++.++|++..+|+.+..++...|+.
T Consensus       215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            87       79999999999999999999999999999888764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.77  E-value=5.9e-17  Score=129.57  Aligned_cols=170  Identities=10%  Similarity=-0.004  Sum_probs=152.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND----QPEVALLFYRRLLQMGLYNAELFNNLAL  195 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~  195 (341)
                      .+++.+|.++...+++++|+.+|+++++.  .++.+++.+|.+|.. +    ++++|+.+|+++.+  +.++.+++++|.
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~   93 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLAR   93 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence            78999999999999999999999999875  589999999999998 7    89999999999975  568999999999


Q ss_pred             HHHH----cCChhHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        196 CCFY----SQQYDMVVTCFERALSLAL--NENAADVWYNISHVAIG----ISDTRLAIQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       196 ~~~~----~~~~~~A~~~~~~al~~~~--~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      +|..    .+++++|+.+|+++++..+  ..  +.+++++|.+|..    .+++++|+.+|+++++. +.++.+++++|.
T Consensus        94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~  170 (212)
T 3rjv_A           94 VLVNRQAGATDVAHAITLLQDAARDSESDAA--VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGM  170 (212)
T ss_dssp             HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH--HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHcCCCcch--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            9998    8999999999999999988  45  8899999999999    89999999999999998 677889999999


Q ss_pred             HHHHh-C-----CHHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy16588        266 LEARE-G-----HIERASTYLQAAAASSPYLYETHYNQAV  299 (341)
Q Consensus       266 ~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~  299 (341)
                      +|... |     ++++|+.+|+++++...  ..+...++.
T Consensus       171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~  208 (212)
T 3rjv_A          171 MFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR  208 (212)
T ss_dssp             HHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99764 3     89999999999998753  445555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.77  E-value=8.7e-19  Score=138.76  Aligned_cols=160  Identities=14%  Similarity=0.059  Sum_probs=96.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccc--------------hHHH
Q psy16588        160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN--------------AADV  225 (341)
Q Consensus       160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------------~~~~  225 (341)
                      +......|+++++.+.+.......+.....+..+|..++..|++++|+..|++++.+.|.+.              ...+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            33334444455554444444444444444555555555555555555555555555544440              0267


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16588        226 WYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG  305 (341)
Q Consensus       226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  305 (341)
                      +.++|.++...|++++|+.+++++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.++...+
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            78888888888888888888888888888888888888888888888888888888888888888888888888888777


Q ss_pred             CHHHHH-HHHHHHHh
Q psy16588        306 DLQESY-NIVKKSLD  319 (341)
Q Consensus       306 ~~~~A~-~~~~~al~  319 (341)
                      +..++. ..|.+.+.
T Consensus       171 ~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          171 EARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHC-----------
T ss_pred             HHHHHHHHHHHHHhc
Confidence            777666 44444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.77  E-value=5.4e-17  Score=136.55  Aligned_cols=172  Identities=10%  Similarity=-0.027  Sum_probs=140.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---
Q psy16588        150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA------ELFNNLALCCFYSQQYDMVVTCFERALSLALNE---  220 (341)
Q Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---  220 (341)
                      |.....+...+..+...|++++|++.++++++..+...      ..++.+|.++...|++++|+.++++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            34455667788888899999999999999998877644      345678888888999999999999999765433   


Q ss_pred             -chHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---
Q psy16588        221 -NAADVWYNISHVAIGISDTRLAIQCLHLAL---SIDSSHG----LSQNNLAVLEAREGHIERASTYLQAAAASSPY---  289 (341)
Q Consensus       221 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---  289 (341)
                       ....+++++|.+|...|++++|+.+|++++   +..+++.    .+++++|.+|..+|++++|+.++++++++.++   
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence             225688999999999999999999999999   4455532    68899999999999999999999999987532   


Q ss_pred             ---chhHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q psy16588        290 ---LYETHYNQAVISNLAGDLQES-YNIVKKSLDLH  321 (341)
Q Consensus       290 ---~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~  321 (341)
                         ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence               156889999999999999999 78899998764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.77  E-value=5.6e-17  Score=129.63  Aligned_cols=95  Identities=12%  Similarity=0.070  Sum_probs=45.3

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ  201 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  201 (341)
                      ++.+|..+...|++++|+..|++++  +| ++.+++.+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence            3444444444555555555444443  11 34444444444444444444444444444444444444444444444444


Q ss_pred             ChhHHHHHHHHHHhhccc
Q psy16588        202 QYDMVVTCFERALSLALN  219 (341)
Q Consensus       202 ~~~~A~~~~~~al~~~~~  219 (341)
                      ++++|+..|++++...|.
T Consensus        86 ~~~~A~~~~~~al~~~~~  103 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRG  103 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTT
T ss_pred             cHHHHHHHHHHHHHhCCC
Confidence            444444444444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.77  E-value=3.8e-17  Score=130.57  Aligned_cols=133  Identities=15%  Similarity=0.061  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVA  233 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~  233 (341)
                      ..++.+|.++...|++++|+..|++++  .| ++.+++.+|.++...|++++|+..|++++..+|.+  ..+++++|.++
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~~~   81 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHH
Confidence            456677888888888888888887774  22 66777788888888888888888888888887777  77788888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16588        234 IGISDTRLAIQCLHLALSIDSSHG----------------LSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  291 (341)
Q Consensus       234 ~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  291 (341)
                      ...|++++|+..|+++++..|.+.                .+++++|.++...|++++|+..|++++++.|++.
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            888888888888888887766655                7777777777777888888888887777777653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.7e-17  Score=120.11  Aligned_cols=116  Identities=16%  Similarity=0.009  Sum_probs=79.9

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      .+..+..+|..++..|++++|+..|++++..+|.+  ..+|+++|.++...|++++|+..|+++++++|++..+++.+|.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44566666777777777777777777777777766  6677777777777777777777777777777777777777777


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhC------CCchhHHHHHHHHHHH
Q psy16588        266 LEAREGHIERASTYLQAAAASS------PYLYETHYNQAVISNL  303 (341)
Q Consensus       266 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~  303 (341)
                      ++...|++++|+..|+++++++      |.+..++..++.+..+
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            7777777777777777777766      6666666666655543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.76  E-value=7.5e-17  Score=140.35  Aligned_cols=202  Identities=12%  Similarity=-0.015  Sum_probs=121.3

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----cHH
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRD--------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-----NAE  188 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~  188 (341)
                      +.++|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++...+.     ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            4556666777777777777777766643        222345556677777777777777777777665543     234


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAAD--VW--YNISHVAIGISDTRLAIQCLHLALSIDSSH----GLS  259 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~--~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~  259 (341)
                      ++..+|.++...|++++|..++++++.+.+.. ....  ..  ...+.++...|++++|...+++++...+..    ...
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            56666777777777777777777766653321 0011  11  123344566677777777777766655432    224


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy16588        260 QNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYNQAVISNLAGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  323 (341)
                      +..++.++...|++++|...+++++...+..      ..++..++.++...|++++|...+++++.+.+.
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~  325 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence            5566666777777777777777666553321      125556666677777777777777777666543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.76  E-value=1.4e-17  Score=129.28  Aligned_cols=128  Identities=21%  Similarity=0.235  Sum_probs=91.8

Q ss_pred             HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHcCCh--hH
Q psy16588        129 FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC-CFYSQQY--DM  205 (341)
Q Consensus       129 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~  205 (341)
                      +...|++++|+..+++++..+|++..+++.+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777 6677776  77


Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL  258 (341)
Q Consensus       206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  258 (341)
                      |+.+|++++..+|.+  ..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus       100 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          100 TRAMIDKALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            777777777777777  777777777777777777777777777777776643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.75  E-value=9e-17  Score=122.91  Aligned_cols=130  Identities=12%  Similarity=0.036  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      ..++.+|.+++..|++++|+..|++++...|.+  ..++..+|.++...|++++|+..++++++.+|.+..+++.+|.++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            445556666666666666666666666666665  666666666666666666666666666666666666666666666


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHH--HHHHcCCHHHHHHHHHHHHh
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYETHYNQAV--ISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~  319 (341)
                      ...|++++|+.+|+++++++|.+..++..++.  .+...|++++|+..+.++..
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            66666666666666666666666555533333  35556666666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=1.5e-16  Score=145.08  Aligned_cols=168  Identities=11%  Similarity=0.073  Sum_probs=159.4

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc
Q psy16588        167 DQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQ----------YDMVVTCFERALSLALNENAADVWYNISHVAIGI  236 (341)
Q Consensus       167 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~  236 (341)
                      ...++|++.+.+++..+|++..+|+..+.++...++          ++++++.++++++.+|++  ..+|+..+.++...
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~--y~aW~hR~w~l~~l  120 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--YGTWHHRCWLLSRL  120 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc
Confidence            345688999999999999999999999999999998          999999999999999999  99999999999999


Q ss_pred             C--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc---------
Q psy16588        237 S--DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQAAAASSPYLYETHYNQAVISNLA---------  304 (341)
Q Consensus       237 g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------  304 (341)
                      +  ++++++++++++++.+|.+..+|...+.+....| .+++++++++++++.+|.+..+|...+.++...         
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence            9  7799999999999999999999999999999999 999999999999999999999999999999885         


Q ss_pred             -----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        305 -----GDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       305 -----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                           +.++++++++.+++.++|++..+|..+..+..
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence                 56899999999999999999999998877654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.75  E-value=4.9e-17  Score=124.56  Aligned_cols=115  Identities=10%  Similarity=0.051  Sum_probs=81.4

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL  263 (341)
Q Consensus       184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  263 (341)
                      +.+...++.+|.+++..|++++|+.+|++++.++|.+  ..+|+++|.++...|++++|+..|+++++++|++..+++.+
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN--PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4455667777777777777777777777777777777  77777777777777777777777777777777777777777


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                      |.++..+|++++|+.+|+++++++|++..++...+..
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            7777777777777777777777777776655555444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.75  E-value=1.4e-16  Score=121.74  Aligned_cols=132  Identities=15%  Similarity=0.185  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      +..++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++..+|.+  ..+++.+|.+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHH
Confidence            45667777777777888888888888877777777778888888888888888888888888887777  7778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHh
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV--LEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~  286 (341)
                      +...|++++|+.+|+++++.+|.+..++..++.  .+...|++++|+..+.+...+
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            888888888888888888888777777644443  367778888888887776543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.74  E-value=2.1e-16  Score=132.91  Aligned_cols=168  Identities=13%  Similarity=-0.028  Sum_probs=143.4

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------H
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM------EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------A  187 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~  187 (341)
                      ..+...+..+...|++++|+..++++++..+...      ..++.+|.++...|++++|+.+|++++...+..      .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            4556778899999999999999999999877654      345678999999999999999999999865443      5


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhh---cccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------C
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSL---ALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS------H  256 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~  256 (341)
                      .+++.+|.+|...|++++|+.+|++++.+   .+..  ....+++++|.+|..+|++++|+.++++++++.+.      .
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            68999999999999999999999999954   4443  12368999999999999999999999999987532      2


Q ss_pred             HHHHHHHHHHHHHhCCHHHH-HHHHHHHHHhC
Q psy16588        257 GLSQNNLAVLEAREGHIERA-STYLQAAAASS  287 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~  287 (341)
                      ..+++++|.+|..+|++++| ..+|++++.+.
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            77899999999999999999 88899998753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.74  E-value=1.3e-16  Score=134.27  Aligned_cols=165  Identities=12%  Similarity=-0.024  Sum_probs=129.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHH
Q psy16588        157 ACIGVNHFYNDQPEVALLFYRRLLQMGLYNAE------LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVW  226 (341)
Q Consensus       157 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~  226 (341)
                      ...+..+...|++++|+..+++++...+..+.      .+..+|.++...+++++|+.+|++++...+..    ....++
T Consensus        79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 3u3w_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            34566777888899999999888887665544      33457888888889999999999998865443    124478


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhH
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLALSID-------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YET  293 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~  293 (341)
                      .++|.+|...|++++|+.+|+++++..       +....+++++|.+|..+|++++|+.++++++++.+..      ..+
T Consensus       159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~  238 (293)
T 3u3w_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            899999999999999999999998531       2235578899999999999999999999998876433      568


Q ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Q psy16588        294 HYNQAVISNLAG-DLQESYNIVKKSLDLH  321 (341)
Q Consensus       294 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~  321 (341)
                      ++++|.++..+| .+++|+.+|++++.+.
T Consensus       239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          239 YYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            899999999999 4699999999998763

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.74  E-value=1.6e-17  Score=131.47  Aligned_cols=149  Identities=11%  Similarity=-0.047  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-----------
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG-----------  257 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------  257 (341)
                      .....+......|+++++.+.+.......+..  ...+..+|.+++..|++++|+..|+++++..|.++           
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   83 (198)
T 2fbn_A            6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQS--AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK   83 (198)
T ss_dssp             ----------------CCCSGGGCCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred             cccchhhhhhhhhhccccCchhhCCHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence            34455666777888888888888777666666  88999999999999999999999999999999887           


Q ss_pred             -----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        258 -----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR  332 (341)
Q Consensus       258 -----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  332 (341)
                           .++.++|.++...|++++|+.++++++.++|++..+++.+|.++..+|++++|+.+|++++.++|++..++..++
T Consensus        84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A           84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence                 899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhh
Q psy16588        333 KLEQYFS  339 (341)
Q Consensus       333 ~~~~~~~  339 (341)
                      .+...++
T Consensus       164 ~~~~~~~  170 (198)
T 2fbn_A          164 LCVNKLK  170 (198)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.74  E-value=1e-16  Score=117.78  Aligned_cols=120  Identities=13%  Similarity=0.050  Sum_probs=75.4

Q ss_pred             CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL  263 (341)
Q Consensus       184 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  263 (341)
                      |.....++.+|.++...|++++|+.+|++++...|.+  ..+++.+|.++...|++++|+.+++++++.+|.+..+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            4445556666666666666666666666666666665  66666666666666666666666666666666666666666


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16588        264 AVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG  305 (341)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  305 (341)
                      |.++...|++++|+.+|+++++.+|.+..++..++.++..+|
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            666666666666666666666666666666666666665554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.74  E-value=3.4e-17  Score=119.74  Aligned_cols=111  Identities=15%  Similarity=0.047  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-------hHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-------ETHY  295 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~  295 (341)
                      ..++.++|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++.       .++.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            667788888888888888888888888888888888888888888888888888888888888876553       3678


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      ++|.++..+|++++|+.+|++++...|+ ++....+..+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            8888899999999999999999988875 4444444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.74  E-value=1.4e-16  Score=134.05  Aligned_cols=166  Identities=13%  Similarity=-0.025  Sum_probs=139.9

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------HHH
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATCME------AIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AEL  189 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~  189 (341)
                      .......+...|++++|+..+++++...+....      .+..+|.++...+++++|+.+|++++...+..      ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            334567888999999999999999998776655      23358999999999999999999999864432      347


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhcc---cc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLAL---NE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GL  258 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~  258 (341)
                      +.++|.+|...|++++|+.+|+++++...   .+  ....+++++|.+|..+|++++|+.++++++++.+..      +.
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            99999999999999999999999995321   11  236789999999999999999999999999876433      78


Q ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHHHHHhC
Q psy16588        259 SQNNLAVLEAREG-HIERASTYLQAAAASS  287 (341)
Q Consensus       259 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~  287 (341)
                      +++++|.++..+| .+++|+.+|++++.+.
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9999999999999 5799999999999753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.74  E-value=1.3e-17  Score=123.90  Aligned_cols=114  Identities=13%  Similarity=0.008  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh----
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSS-------HG-----LSQNNLAVLEAREGHIERASTYLQAAAAS----  286 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  286 (341)
                      ...+.+.|..++..|+|++|+..|+++++++|+       +.     .+|.++|.++..+|+|++|+..|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            445566666666666666666666666666666       33     37788888888888888888888888888    


Q ss_pred             ---CCCchhHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        287 ---SPYLYETH----YNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       287 ---~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                         +|++..+|    +++|.++..+|++++|+..|+++++++|++......+..+.+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~  147 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME  147 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence               88888888    888888888888888888888888888877555444444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.74  E-value=7.8e-17  Score=123.40  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  231 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~  231 (341)
                      +...++.+|.++...|++++|+.+|++++..+|.+..+++.+|.+|...|++++|+.+|++++.++|.+  ..+|+.+|.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Confidence            455566666666666666666666666666666666666666666666666666666666666666666  666666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      ++...|++++|+.+|+++++++|++...+...+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            6666666666666666666666666555444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.73  E-value=1.2e-16  Score=116.77  Aligned_cols=119  Identities=14%  Similarity=0.099  Sum_probs=60.9

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      +...+..+|.++...|++++|+..|++++...|.+  ..++..+|.++...|++++|+..++++++.+|.+..+++.+|.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            34444455555555555555555555555555544  4555555555555555555555555555555555555555555


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy16588        266 LEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGD  306 (341)
Q Consensus       266 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  306 (341)
                      ++...|++++|+..|+++++.+|++..++..++.++...|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            55555555555555555555555555555555555544443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.73  E-value=1.6e-16  Score=116.61  Aligned_cols=122  Identities=12%  Similarity=0.040  Sum_probs=87.9

Q ss_pred             CCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHH
Q psy16588        114 DGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNL  193 (341)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  193 (341)
                      ..+....++..+|..+...|++++|+..|++++..+|.+..+++.+|.++...|++++|+.+|++++...|.+..+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            33444467777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS  237 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g  237 (341)
                      |.++...|++++|+.+|++++..+|.+  ..++..++.++...|
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSC--KEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGG--THHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhc
Confidence            777777777777777777777777766  667777777766554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.72  E-value=6.2e-18  Score=151.00  Aligned_cols=144  Identities=15%  Similarity=0.113  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-------------chHHHHHHHHHHHHh
Q psy16588        169 PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-------------NAADVWYNISHVAIG  235 (341)
Q Consensus       169 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~~~~~~~la~~~~~  235 (341)
                      +++|+..|+.++...|.....+..+|.+++..|+|++|+..|++++.+.|.+             ....+|+++|.+|..
T Consensus       250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~  329 (457)
T 1kt0_A          250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK  329 (457)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444455555555555555555555555444443             014667777777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16588        236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN  312 (341)
Q Consensus       236 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  312 (341)
                      +|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++...+++++|..
T Consensus       330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777766654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.72  E-value=8.7e-18  Score=150.08  Aligned_cols=152  Identities=13%  Similarity=0.194  Sum_probs=137.4

Q ss_pred             HcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHH
Q psy16588        131 GLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---------------AELFNNLAL  195 (341)
Q Consensus       131 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~  195 (341)
                      ..+++++|+..|+.++...|.....+..+|.+++..|++++|+..|++++.+.|.+               ..+++++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999998889899999999999999999999999999999999988               689999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16588        196 CCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER  275 (341)
Q Consensus       196 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  275 (341)
                      +|..+|++++|+.+|++++.++|.+  ..+++++|.+|..+|++++|+..|+++++++|++..++..++.++...+++++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSAN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999  99999999999999999999999999999999999999999999999999998


Q ss_pred             HHHH-HHHHH
Q psy16588        276 ASTY-LQAAA  284 (341)
Q Consensus       276 A~~~-~~~al  284 (341)
                      +... |++++
T Consensus       404 a~~~~~~~~f  413 (457)
T 1kt0_A          404 RDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            8753 44433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.72  E-value=1.5e-16  Score=116.31  Aligned_cols=122  Identities=19%  Similarity=0.207  Sum_probs=96.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHH
Q psy16588        150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI  229 (341)
Q Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l  229 (341)
                      |.+...+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.+  ..+++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~   86 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHH
Confidence            34566777778888888888888888888888888778888888888888888888888888888887777  7788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q psy16588        230 SHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI  273 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  273 (341)
                      |.++...|++++|+.+|+++++.+|++..++..++.++...|++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            88888888888888888888888888888888888887777764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.72  E-value=8.8e-16  Score=127.26  Aligned_cols=188  Identities=11%  Similarity=0.074  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q psy16588        138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL--YNAELFNNLALCCFYSQQYDMVVTCFERALS  215 (341)
Q Consensus       138 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  215 (341)
                      |+..+++.+...+.....+..+|.++...|++++|++++.+.+..+|  .+.+++..++.++...|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78899998887666777788999999999999999999999999987  8899999999999999999999999999999


Q ss_pred             hccc----cchHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        216 LALN----ENAADVWYNI--SHVAIGIS--DTRLAIQCLHLALSIDSS--HGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       216 ~~~~----~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      .+|+    +  -.+...+  +.+.+..|  ++.+|...|+++....|+  ....+++   ++..+|++++|...++.+++
T Consensus       165 ~~~d~~~~~--d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          165 AIEDTVSGD--NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HSCHHHHHH--HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHS
T ss_pred             cCccccccc--hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHH
Confidence            9883    2  2334444  44455556  999999999999988887  3344444   89999999999999998877


Q ss_pred             h----------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        286 S----------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR  332 (341)
Q Consensus       286 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  332 (341)
                      .          +|+++.++.+++.+...+|+  +|.+++.++.+.+|+++.......
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~  294 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE  294 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence            6          48899999999999999998  899999999999999987665443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.72  E-value=2.1e-16  Score=120.71  Aligned_cols=114  Identities=15%  Similarity=0.051  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSI------------------DSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      ..+...|..++..|+|++|+..|.+++..                  +|.+..+++++|.++..+|++++|+..+++++.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            34444444444444444444444444444                  444455666666666666666666666666666


Q ss_pred             hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Q psy16588        286 SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS-YSWDILRKLEQY  337 (341)
Q Consensus       286 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~  337 (341)
                      ++|++..+++.+|.++..+|++++|+..|++++.++|++. .+...+..+...
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666665 445555554443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.71  E-value=1.7e-16  Score=114.86  Aligned_cols=103  Identities=12%  Similarity=0.010  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  303 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  303 (341)
                      ..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        304 AGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       304 ~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                      .|++++|+..|+++++++|++..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            88888888888888888887643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.71  E-value=4.7e-16  Score=123.07  Aligned_cols=155  Identities=10%  Similarity=0.020  Sum_probs=93.4

Q ss_pred             hcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh------ccccchHHHHHHHHHHHHhcCC
Q psy16588        165 YNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL------ALNENAADVWYNISHVAIGISD  238 (341)
Q Consensus       165 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~la~~~~~~g~  238 (341)
                      ..|++++|++.++......+....++..+|.++...|++++|+.++++++.+      .+..  ..++.++|.++...|+
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE--HRALHQVGMVERMAGN   81 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHTTC
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHcCC
Confidence            4456666666444333322245556666666666666666666666666663      2222  5566667777777777


Q ss_pred             HHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--c----hhHHHHHHHHHHHcC
Q psy16588        239 TRLAIQCLHLALSI---DSS----HGLSQNNLAVLEAREGHIERASTYLQAAAASSPY--L----YETHYNQAVISNLAG  305 (341)
Q Consensus       239 ~~~A~~~~~~al~~---~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g  305 (341)
                      +++|+.++++++++   .++    ...++.++|.++...|++++|+.++++++.+.+.  +    ..++.++|.++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77777777776665   232    2345666777777777777777777777654321  1    124567777777777


Q ss_pred             CHHHHHHHHHHHHhcC
Q psy16588        306 DLQESYNIVKKSLDLH  321 (341)
Q Consensus       306 ~~~~A~~~~~~al~~~  321 (341)
                      ++++|..++++++++.
T Consensus       162 ~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          162 NLLEAQQHWLRARDIF  177 (203)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            7777777777777664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.71  E-value=5.5e-16  Score=114.68  Aligned_cols=113  Identities=12%  Similarity=-0.009  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      +..++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++.++|++..+++.+|.++.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            55555666666666666666666666666666555666666666666666666666666666666665556666666666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHH
Q psy16588        303 LAGDLQESYNIVKKSLDLHPG-----HSYSWDILRKLE  335 (341)
Q Consensus       303 ~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~  335 (341)
                      ..|++++|+..|++++.+.|+     +...+..+..+.
T Consensus        89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            666666666666666655555     444444444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.70  E-value=1.7e-15  Score=108.54  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      ...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            66788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       303 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      ..|++++|..+|+++++.+|++..++..++.+.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            8888888888888888888888888887777653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.70  E-value=1.6e-15  Score=109.76  Aligned_cols=113  Identities=26%  Similarity=0.369  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      ..++.+|.++...|++++|+.+|++++...|.+  ..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            344444444444444444444444444444444  444444444444444444444444444444444444444444444


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      ...|++++|+..|++++..+|++..++..++.++.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44444444444444444444444444444444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.70  E-value=8.3e-16  Score=112.28  Aligned_cols=101  Identities=21%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----chHHHHHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAADVWYN  228 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~  228 (341)
                      .++..+|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|..     ....++.+
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            3455566666666666666666666666666666666666666666666666666666666655544     11234455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16588        229 ISHVAIGISDTRLAIQCLHLALSIDS  254 (341)
Q Consensus       229 la~~~~~~g~~~~A~~~~~~al~~~p  254 (341)
                      +|.++..+|++++|+++|++++...|
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            55555555555555555555555444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.70  E-value=2.5e-17  Score=134.74  Aligned_cols=186  Identities=9%  Similarity=-0.118  Sum_probs=159.6

Q ss_pred             hcccCCCCCchhHhhhcH-------HHHHHHcCCchHHHHHHHHHHHhCCCCH---------------------HHHHHH
Q psy16588        108 SMLSQPDGPFIQVSRLNL-------AKIFEGLNNMPMSVKYYKLILKRDATCM---------------------EAIACI  159 (341)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------------~~~~~l  159 (341)
                      ++..+|+.+   .+|+++       +.++...+++.+++..+.+.+.+.|...                     ++...+
T Consensus        32 a~~~dP~~~---Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~Lay  108 (282)
T 4f3v_A           32 ITNYDESAC---DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGF  108 (282)
T ss_dssp             HHHHCTTCH---HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHH
T ss_pred             HHHhChhhh---HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHH
Confidence            445566666   889988       7999999999999999999999777643                     344558


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCH
Q psy16588        160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDT  239 (341)
Q Consensus       160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~  239 (341)
                      +.++...|++++|.+.|..++...|.+. +.+.+|.+++..++|++|+.+|+++....+......+++++|.++..+|++
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~  187 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF  187 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence            8999999999999999999999999888 999999999999999999999998876532211245899999999999999


Q ss_pred             HHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16588        240 RLAIQCLHLALSID--SS-HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       240 ~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  298 (341)
                      ++|+.+|++++...  |. ...+++++|.++..+|+.++|...|++++..+|+ ..++..|.
T Consensus       188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            99999999998654  55 5679999999999999999999999999999998 77666554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.70  E-value=5.4e-16  Score=114.72  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=72.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN  262 (341)
Q Consensus       183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  262 (341)
                      .|.++..++.+|.+++..|++++|+.+|++++..+|.+  ..+++.+|.++...|++++|+..|+++++++|++..+++.
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            44555666666666666666666666666666666666  6666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHH
Q psy16588        263 LAVLEAREGHIERASTYLQAAAASSPY-----LYETHYNQAVISN  302 (341)
Q Consensus       263 l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~  302 (341)
                      +|.++...|++++|+..|+++++++|+     +..++..+..+..
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666555     3444444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.69  E-value=6.8e-16  Score=122.12  Aligned_cols=159  Identities=16%  Similarity=0.132  Sum_probs=131.6

Q ss_pred             HHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHcCCh
Q psy16588        130 EGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ------MGLYNAELFNNLALCCFYSQQY  203 (341)
Q Consensus       130 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~~  203 (341)
                      +..|++++|+..++......+....++..+|.++...|++++|+.+|++++.      ..+....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            5689999999966655553336788999999999999999999999999998      4455678899999999999999


Q ss_pred             hHHHHHHHHHHhh---cccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHhCC
Q psy16588        204 DMVVTCFERALSL---ALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS--SH----GLSQNNLAVLEAREGH  272 (341)
Q Consensus       204 ~~A~~~~~~al~~---~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~g~  272 (341)
                      ++|+.++++++.+   .+++  ....++.++|.++...|++++|+.+++++++..+  .+    ..++..+|.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999999998   2311  2367799999999999999999999999997642  22    3457899999999999


Q ss_pred             HHHHHHHHHHHHHhCC
Q psy16588        273 IERASTYLQAAAASSP  288 (341)
Q Consensus       273 ~~~A~~~~~~al~~~p  288 (341)
                      +++|+.++++++++..
T Consensus       163 ~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          163 LLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.69  E-value=1.8e-16  Score=117.78  Aligned_cols=113  Identities=13%  Similarity=0.040  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccc-------c---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALN-------E---NAADVWYNISHVAIGISDTRLAIQCLHLALSI-----  252 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----  252 (341)
                      ..+...|..++..|+|++|+..|+++++++|+       +   ....+|.++|.++..+|+|++|+..|++++++     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            34455555666666666666666666666555       3   01448888888888889999988888888888     


Q ss_pred             --CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        253 --DSSHGLSQ----NNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       253 --~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                        +|++..+|    +++|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence              99998888    9999999999999999999999999888776654444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.69  E-value=2.5e-15  Score=108.70  Aligned_cols=121  Identities=26%  Similarity=0.434  Sum_probs=98.4

Q ss_pred             CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHH
Q psy16588        149 DATC-MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWY  227 (341)
Q Consensus       149 ~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  227 (341)
                      +|.. ..+++.+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.++++++...|.+  ..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~   81 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWY   81 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHH
Confidence            3444 66778888888888888888888888888888888888888888888888888888888888888887  88888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16588        228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG  271 (341)
Q Consensus       228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  271 (341)
                      .+|.++...|++++|+..|+++++.+|.+..++..++.++...|
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            88888888888888888888888888888888888888776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.69  E-value=5.3e-16  Score=118.49  Aligned_cols=117  Identities=13%  Similarity=0.136  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhh------------------ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSL------------------ALNENAADVWYNISHVAIGISDTRLAIQCLHLA  249 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  249 (341)
                      ..+...|..++..|+|++|+..|++++.+                  +|..  ..+++++|.++..+|++++|+..++++
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN--IPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH--HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34455555555555555555555555555                  5666  788888888888888888888888888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCC
Q psy16588        250 LSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-ETHYNQAVISNLAGD  306 (341)
Q Consensus       250 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~  306 (341)
                      ++++|.++.+++.+|.++..+|++++|+..|++++.++|++. .+...++.+....++
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888887 566667666655443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.68  E-value=2.9e-15  Score=109.53  Aligned_cols=115  Identities=12%  Similarity=0.009  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHHH
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG---LSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYNQ  297 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  297 (341)
                      ..++.+|.++...|++++|+..|+++++..|++.   .+++.+|.++...|++++|+..|++++...|++   ..+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3466778888888888888888888888877776   678888888888888888888888888888877   6678888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        298 AVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       298 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      |.++..+|++++|+..|++++...|++..+......+....
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~  123 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR  123 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            88888888888888888888888888877777666665543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.4e-15  Score=111.68  Aligned_cols=118  Identities=14%  Similarity=0.141  Sum_probs=96.4

Q ss_pred             ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhH
Q psy16588        217 ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYET  293 (341)
Q Consensus       217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  293 (341)
                      .+..  ...++.+|..+...|++++|+..|+++++.+|++   ..++..+|.++...|++++|+..+++++..+|++..+
T Consensus        24 ~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           24 GASS--VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             TCCC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             chHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3445  7778888888888888888888888888888876   7788888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        294 HYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       294 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      ++.+|.++...|++++|+.+|++++.++|++..++..+..+..
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            8888888888888888888888888888888888877776653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.67  E-value=7.4e-15  Score=141.17  Aligned_cols=196  Identities=10%  Similarity=-0.050  Sum_probs=138.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..|..+|..+...|++++|+..|.++     +++..+..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAK 1179 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAK 1179 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHh
Confidence            67788888888888888888888665     67778888888888888888888888877766533 2222235666666


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .+++++ ++.|.     ...+  ...+..+|..+...|+|++|..+|.++        ..|..++.++.++|++++|++.
T Consensus      1180 l~rlee-le~fI-----~~~n--~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A         1180 TNRLAE-LEEFI-----NGPN--NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred             hcCHHH-HHHHH-----hCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHH
Confidence            655553 22221     1122  345556777777777777777777774        3667777777777777777777


Q ss_pred             HHHHHHhCC-------------------------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        280 LQAAAASSP-------------------------YLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       280 ~~~al~~~p-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      ++++....+                         .+++.+..++..|...|.+++|+.++++++.+++.+...+..++.+
T Consensus      1244 arKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A         1244 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred             HHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence            776633221                         1334556788889999999999999999999999998888777766


Q ss_pred             HHH
Q psy16588        335 EQY  337 (341)
Q Consensus       335 ~~~  337 (341)
                      ...
T Consensus      1324 yaK 1326 (1630)
T 1xi4_A         1324 YSK 1326 (1630)
T ss_pred             HHh
Confidence            554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.67  E-value=3.5e-15  Score=106.84  Aligned_cols=111  Identities=11%  Similarity=0.041  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      ..++.+|.++...|++++|+.+|++++...|.+  ..++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            444555555555555555555555555555555  555555555555555555555555555555555555555555555


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                      ...|++++|+..|+++++.+|++..++..++.+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            555555555555555555555555555555444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.67  E-value=7.7e-16  Score=111.40  Aligned_cols=99  Identities=19%  Similarity=0.150  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      ++.+|..+...|++++|+..|+++++.+|++  ..+|+.+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555  55555555555555555555555555555555555555555555555


Q ss_pred             hCCHHHHHHHHHHHHHhCCCc
Q psy16588        270 EGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~  290 (341)
                      .|++++|+..|+++++++|++
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHHHHHhCcCC
Confidence            555555555555555555543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.66  E-value=3.6e-17  Score=146.70  Aligned_cols=136  Identities=13%  Similarity=0.059  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL  266 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  266 (341)
                      +..+..+|.++...|++++|+..|+++++++|.+  ..++.++|.++..+|++++|+..|+++++++|++..+++++|.+
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3445566777777788888888888888888877  78888888888888888888888888888888888888888888


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCC
Q psy16588        267 EAREGHIERASTYLQAAAASSPYLYETHYNQAVI--SNLAGDLQESYNIVK-----------KSLDLHPGH  324 (341)
Q Consensus       267 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~al~~~p~~  324 (341)
                      |..+|++++|+..|+++++++|++..++..++.+  +...|++++|+..++           +++.+.|+.
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            8888888888888888888888777777777777  777788888888887           666666654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.66  E-value=1e-16  Score=137.48  Aligned_cols=167  Identities=11%  Similarity=0.048  Sum_probs=98.0

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc
Q psy16588        141 YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  220 (341)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  220 (341)
                      .+...+...+.....+..+|..++..|++++|+.+|++++...|.+..        +...+++.++...+         .
T Consensus       167 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l---------~  229 (338)
T 2if4_A          167 RSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV---------K  229 (338)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH---------H
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH---------H
Confidence            333344444556777888899999999999999999999888886541        22333444433222         1


Q ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                        ..+++++|.++..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus       230 --~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          230 --NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             --THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence              357889999999999999999999999999999999999999999999999999999999999999998898888888


Q ss_pred             -HHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        301 -SNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       301 -~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                       ....+..+++...|.+++...|+++.
T Consensus       308 ~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          308 AEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence             44566778888899999999888754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.65  E-value=6.6e-15  Score=107.47  Aligned_cols=116  Identities=13%  Similarity=0.025  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc-------hhHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL-------YETHY  295 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  295 (341)
                      ...++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++++...|.+       ..+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            56677777777777777777777777777777777777777777777777777777777777776655       66777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .+|.++...|++++|+.+|++++...| +...+..+..+...++
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777 4666666666665543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.65  E-value=2.6e-16  Score=134.92  Aligned_cols=154  Identities=8%  Similarity=0.032  Sum_probs=95.3

Q ss_pred             hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q psy16588        119 QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF  198 (341)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  198 (341)
                      ...+..+|..++..|++++|+..|++++...|++.        .+...++++++...+.         ..+++++|.+|.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence            35677889999999999999999999999998654        2334455555554432         247889999999


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhCCHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE-AREGHIERAS  277 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~  277 (341)
                      ..|++++|+.+|++++.++|.+  ..+++++|.+|..+|++++|+..|+++++++|++..++..++.+. ...+..+++.
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKN--PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  999999999999999999999999999999999999999988884 4566788888


Q ss_pred             HHHHHHHHhCCCch
Q psy16588        278 TYLQAAAASSPYLY  291 (341)
Q Consensus       278 ~~~~~al~~~p~~~  291 (341)
                      ..|.+++...|.+.
T Consensus       320 ~~~~~~l~~~p~~~  333 (338)
T 2if4_A          320 EMYKGIFKGKDEGG  333 (338)
T ss_dssp             --------------
T ss_pred             HHHHHhhCCCCCCC
Confidence            99999998888764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.65  E-value=7e-17  Score=144.79  Aligned_cols=126  Identities=9%  Similarity=0.023  Sum_probs=76.5

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..+..+|..+...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|.+..+++++|.+|..
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHH--HHhcCCHHHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHV--AIGISDTRLAIQCLH  247 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~  247 (341)
                      +|++++|+..|+++++++|++  ..++..++.+  +...|++++|++.++
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTC--TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            666666666666666666665  5555555555  555566666666666

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=7.4e-15  Score=109.84  Aligned_cols=111  Identities=11%  Similarity=-0.040  Sum_probs=55.9

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATC---MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALC  196 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  196 (341)
                      ..++.+|..+...|++++|+.+|+++++.+|++   ..+++.+|.++...|++++|+.+|++++..+|.+..+++.+|.+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  108 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence            444555555555555555555555555555544   44444555555555555555555555555555444455555555


Q ss_pred             HHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       197 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      +...|++++|+.+|++++.++|.+  ..++..++.+
T Consensus       109 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~  142 (148)
T 2dba_A          109 LEKLGRLDQAVLDLQRCVSLEPKN--KVFQEALRNI  142 (148)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHH
Confidence            555555555555555555554444  4444444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=3e-15  Score=132.77  Aligned_cols=201  Identities=11%  Similarity=0.032  Sum_probs=169.4

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM-----------------EAIACIGVNHFYNDQPEVALLFYRRLLQM  182 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~  182 (341)
                      .+.+..|..+...|+|++|++.|.++++..+...                 .++..+|.+|...|++++|++++.+++..
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4566778888999999999999999999877632                 35889999999999999999999999886


Q ss_pred             CCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        183 GLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       183 ~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      .+..      ..+...++.++...|++++|+.++++++...+..    ....++..+|.++...|+|++|+..+++++..
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            5443      2356678888888999999999999999875443    34778999999999999999999999999875


Q ss_pred             C------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---c----hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        253 D------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY---L----YETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       253 ~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      .      +....++..+|.+|...|++++|...+++++.+.+.   .    ...+..+|.++...|++++|..+|.+++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2      334678999999999999999999999999876432   2    23677888999999999999999999986


Q ss_pred             c
Q psy16588        320 L  320 (341)
Q Consensus       320 ~  320 (341)
                      .
T Consensus       245 ~  245 (434)
T 4b4t_Q          245 S  245 (434)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.63  E-value=1.4e-15  Score=112.77  Aligned_cols=98  Identities=10%  Similarity=-0.010  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc---
Q psy16588        238 DTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH----------IERASTYLQAAAASSPYLYETHYNQAVISNLA---  304 (341)
Q Consensus       238 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---  304 (341)
                      .|++|++.++++++++|+++.+|+++|.++...++          +++|+..|+++++++|++..+|+++|.+|..+   
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l   96 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   96 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence            34444444444444444444444444444444433          33555555555555555555555555555554   


Q ss_pred             --------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        305 --------GDLQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       305 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                              |++++|+.+|+++++++|++...+..+..+.
T Consensus        97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                    3677777777777777777766666555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.63  E-value=2.5e-15  Score=106.58  Aligned_cols=105  Identities=10%  Similarity=-0.039  Sum_probs=74.8

Q ss_pred             cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--chhHHH
Q psy16588        218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY--LYETHY  295 (341)
Q Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~  295 (341)
                      |.+  ..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|.  +..++.
T Consensus         3 p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            3 DQN--PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CSS--TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCc--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            444  5666677777777777777777777777777777777777777777777777777777777777777  667777


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHhcCCCC
Q psy16588        296 NQAVISNLA-GDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       296 ~l~~~~~~~-g~~~~A~~~~~~al~~~p~~  324 (341)
                      .+|.++... |++++|+.++++++...|++
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            777777777 77777777777777776654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.63  E-value=8.9e-15  Score=126.73  Aligned_cols=141  Identities=17%  Similarity=0.068  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      ...+..+|..+...|++++|+..|+++++..+...                  .....++.....|..  ..++.++|.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~nla~~  282 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVA--LSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHH--HHHHHHHHHH
Confidence            45566777777777777777777777776433221                  111233444467777  8899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN  312 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  312 (341)
                      +..+|++++|+.+++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888887754


Q ss_pred             H
Q psy16588        313 I  313 (341)
Q Consensus       313 ~  313 (341)
                      .
T Consensus       363 ~  363 (370)
T 1ihg_A          363 A  363 (370)
T ss_dssp             C
T ss_pred             H
Confidence            3

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.62  E-value=2.6e-14  Score=104.39  Aligned_cols=116  Identities=19%  Similarity=0.140  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH---GLSQNNLA  264 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~  264 (341)
                      .++.+|.+++..|++++|+..|++++...|++ ....+++.+|.++...|++++|+..|+++++.+|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            35667777777777777877777777777776 112677778888888888888888888888877777   77788888


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA  304 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  304 (341)
                      .++...|++++|+..|++++...|++..+......+....
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~  123 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR  123 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            8888888888888888888888887776655555444333

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.62  E-value=8.3e-14  Score=128.86  Aligned_cols=222  Identities=13%  Similarity=0.033  Sum_probs=191.3

Q ss_pred             hhhhcccCCCCCchhHhhhcHHHHHHHcCCchHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q psy16588        105 GTASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSV-KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG  183 (341)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  183 (341)
                      -..++...|..+   ..|+..+..+...|+.++|. .+|++++...|.+...|..++......|++++|...|++++...
T Consensus       332 Ye~aL~~~p~~~---~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          332 YMQAAQHVCFAP---EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI  408 (679)
T ss_dssp             HHHHHHHTTTCH---HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            345566677766   78999999999999999997 99999999999999999999999999999999999999998752


Q ss_pred             -----------CC-----------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-ccccchHHHHHHHHHHHHhcC-CH
Q psy16588        184 -----------LY-----------NAELFNNLALCCFYSQQYDMVVTCFERALSL-ALNENAADVWYNISHVAIGIS-DT  239 (341)
Q Consensus       184 -----------p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~la~~~~~~g-~~  239 (341)
                                 |.           ...+|...+......|..+.|..+|.++++. .+..  ..+|...+.+....+ ++
T Consensus       409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--~~lyi~~A~lE~~~~~d~  486 (679)
T 4e6h_A          409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--PDIYLENAYIEYHISKDT  486 (679)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--THHHHHHHHHHHTTTSCC
T ss_pred             HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHhCCCH
Confidence                       42           3457888889888999999999999999988 4444  667777777776665 48


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        240 RLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP---YLYETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       240 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      +.|...|+.+++..|+++..|...+......|+.+.|...|++++...|   .....|..+.......|+.+.+...+++
T Consensus       487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R  566 (679)
T 4e6h_A          487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR  566 (679)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887   3556888899999999999999999999


Q ss_pred             HHhcCCCCHHHHHHH
Q psy16588        317 SLDLHPGHSYSWDIL  331 (341)
Q Consensus       317 al~~~p~~~~~~~~l  331 (341)
                      +.+..|++.......
T Consensus       567 ~~~~~P~~~~~~~f~  581 (679)
T 4e6h_A          567 FFEKFPEVNKLEEFT  581 (679)
T ss_dssp             HHHHSTTCCHHHHHH
T ss_pred             HHHhCCCCcHHHHHH
Confidence            999999986654443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.62  E-value=2.9e-15  Score=129.52  Aligned_cols=193  Identities=11%  Similarity=0.073  Sum_probs=107.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..+...+..+...|++++|+.+++.+.+..+ ++.+...++.+|.+.|+++++.++++.     | +...|..+|..+..
T Consensus        62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~  134 (449)
T 1b89_A           62 SSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYD  134 (449)
T ss_dssp             ------------------------------------------------CHHHHTTTTTC-----C---------------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHH
Confidence            3455666677777888888887777776433 356677777888888888887777642     3 33588899999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|+|++|..+|.++          ..|..+|.++.++|++++|++.++++     .++.+|...+.++...|+++.|..+
T Consensus       135 ~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~  199 (449)
T 1b89_A          135 EKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC  199 (449)
T ss_dssp             --CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred             cCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHH
Confidence            99999999999865          35788999999999999999999998     4688999999999999999999777


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       280 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      ... +..+|   +-...+..+|.+.|++++|+.++++++.+++.+...+..++.+...+
T Consensus       200 ~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          200 GLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             TTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence            765 32444   44556889999999999999999999999999999998887776543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.62  E-value=4.7e-14  Score=116.95  Aligned_cols=170  Identities=12%  Similarity=-0.035  Sum_probs=144.6

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----cHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDA--TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY----NAELFNNL  193 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l  193 (341)
                      ...+.+|.++...|++++|+..+.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.+.+|+    +..+...+
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L  180 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL  180 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence            4567889999999999999999999999887  78999999999999999999999999999999883    22333344


Q ss_pred             --HHHHHHcC--ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCHHH
Q psy16588        194 --ALCCFYSQ--QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI----------DSSHGLS  259 (341)
Q Consensus       194 --a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~  259 (341)
                        +++.+..|  ++.+|..+|+++....|+......+++   +++.+|++++|...++.+++.          +|+++.+
T Consensus       181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~  257 (310)
T 3mv2_B          181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF  257 (310)
T ss_dssp             HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence              54566666  999999999999988887201334444   899999999999999988876          4889999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHH
Q psy16588        260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETH  294 (341)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  294 (341)
                      +.+++.+...+|+  +|.++++++.+.+|+++.+.
T Consensus       258 LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          258 LANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence            9999999999998  89999999999999998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.61  E-value=7.2e-15  Score=107.27  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------HHH
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-------GLS  259 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~  259 (341)
                      +..++.+|.++...|++++|+.+|++++...|.+  ..+++.+|.++...|++++|+.+|++++...|.+       ..+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3445555555555555555555555555555555  5555555555555555555555555555555444       555


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16588        260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  303 (341)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  303 (341)
                      ++.+|.++...|++++|+..|+++++..| +...+..++.+...
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            66666666666666666666666666655 35555555555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.61  E-value=4.1e-15  Score=105.48  Aligned_cols=104  Identities=13%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccc--cchHHHHH
Q psy16588        150 ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN--ENAADVWY  227 (341)
Q Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~  227 (341)
                      |++..+++.+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|+++++..|.  .  ..++.
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~   80 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN--KDVWA   80 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC--HHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch--HHHHH
Confidence            4444444555555555555555555555555555555555555555555555555555555555555444  4  44555


Q ss_pred             HHHHHHHhc-CCHHHHHHHHHHHHhcCCC
Q psy16588        228 NISHVAIGI-SDTRLAIQCLHLALSIDSS  255 (341)
Q Consensus       228 ~la~~~~~~-g~~~~A~~~~~~al~~~p~  255 (341)
                      .+|.++... |++++|++++++++...|.
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            555555555 5555555555555544443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.61  E-value=2.6e-15  Score=108.00  Aligned_cols=93  Identities=14%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             cCChhHHHHHHHHHHhh---ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16588        200 SQQYDMVVTCFERALSL---ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      .|++++|+.+|++++++   +|.+  ..+++++|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDL--AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            46666777777777776   4665  666777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhCCCchhHH
Q psy16588        277 STYLQAAAASSPYLYETH  294 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~~  294 (341)
                      +..|++++...|+++.+.
T Consensus        81 ~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHhCCCcHHHH
Confidence            777777776666665543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.60  E-value=2.1e-14  Score=108.80  Aligned_cols=134  Identities=15%  Similarity=0.118  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HH
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GL  258 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~  258 (341)
                      ++..+|.++...|++++|+.++++++...+..    ....++..+|.++...|++++|+.+++++++..+..      ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            44555555555555555555555555543322    112355556666666666666666666665543221      34


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        259 SQNNLAVLEAREGHIERASTYLQAAAASSPY------LYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      ++..+|.++...|++++|+.++++++++.+.      ...++..+|.++...|++++|+.++++++++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            5566666666666666666666666654321      123566677777777777777777777776543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.60  E-value=1.6e-14  Score=125.06  Aligned_cols=140  Identities=15%  Similarity=0.107  Sum_probs=109.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..+..+|..++..|++++|+..|+++++..+...                  .....++.....|.+..++.++|.+|..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~~  285 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKLK  285 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4577889999999999999999999998643211                  1112344455667777788888888888


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY  279 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  279 (341)
                      .|++++|+.+++++++++|.+  ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus       286 ~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          286 MSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888887  888888888888888888888888888888888888888888888877777766543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.59  E-value=1.6e-13  Score=126.91  Aligned_cols=204  Identities=8%  Similarity=-0.081  Sum_probs=177.2

Q ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16588        136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVAL-LFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  214 (341)
Q Consensus       136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  214 (341)
                      ......|++++...|.++..|+..+..+...|+.++|. ..|++++...|.+...|..++......|++++|..+|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hhc-----------ccc---------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCC-
Q psy16588        215 SLA-----------LNE---------NAADVWYNISHVAIGISDTRLAIQCLHLALSI-DSSHGLSQNNLAVLEAREGH-  272 (341)
Q Consensus       215 ~~~-----------~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-  272 (341)
                      ...           |.+         ....+|..++......|+.+.|...|.+|++. .+....+|...+.+....++ 
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            853           320         11557899999988999999999999999988 44556778777777777654 


Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhh
Q psy16588        273 IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPG---HSYSWDILRKLEQYFS  339 (341)
Q Consensus       273 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~  339 (341)
                      ++.|...|+.+++..|+++..|..++......|+.+.|..+|++++...|+   ....|.....+....+
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G  555 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG  555 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999884   5567777776665544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.59  E-value=6.2e-15  Score=105.95  Aligned_cols=99  Identities=10%  Similarity=0.033  Sum_probs=59.2

Q ss_pred             cCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy16588        236 ISDTRLAIQCLHLALSI---DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYN  312 (341)
Q Consensus       236 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  312 (341)
                      +|++++|+.+|+++++.   +|++..++.++|.++...|++++|+..|+++++++|++..+++++|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            45566666666666666   355566666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHH
Q psy16588        313 IVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       313 ~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      .|++++...|+++........+
T Consensus        83 ~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHH
Confidence            6666666666665555444333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.58  E-value=3.8e-14  Score=107.37  Aligned_cols=135  Identities=16%  Similarity=0.178  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAA  223 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~  223 (341)
                      .++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++.+.+..    ...
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            445566666666666666666666666553322      1356677777777777777777777777664432    124


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSIDS------SHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  288 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  288 (341)
                      .++..+|.++...|++++|+.+++++++..+      ....++..+|.++...|++++|+.++++++++..
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            5677777777778888888888777776532      1245677788888888888888888888877644

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.57  E-value=9.3e-15  Score=108.36  Aligned_cols=100  Identities=13%  Similarity=-0.011  Sum_probs=56.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHH
Q psy16588        166 NDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC  245 (341)
Q Consensus       166 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  245 (341)
                      .+.+++|++.++++++++|+++++|+++|.++...++++.+....                          +.+++|+..
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eAi~~   68 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEAITK   68 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHHHHH
Confidence            344555555666666666666665555555555555443111100                          013455555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCch
Q psy16588        246 LHLALSIDSSHGLSQNNLAVLEARE-----------GHIERASTYLQAAAASSPYLY  291 (341)
Q Consensus       246 ~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~  291 (341)
                      |+++++++|++..+|+++|.+|..+           |++++|+.+|+++++++|++.
T Consensus        69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            6666666665555566666555554           367777777777777777764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.55  E-value=8.9e-13  Score=127.03  Aligned_cols=172  Identities=9%  Similarity=0.005  Sum_probs=115.5

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHH----------------------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILK----------------------RDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM  182 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~----------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  182 (341)
                      +|.++...|.+++|..+|+++-.                      ...+.+.+|+.+|.++...|++++|+..|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            58888899999999888887521                      01234555666666666666666666666553   


Q ss_pred             CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN  262 (341)
Q Consensus       183 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  262 (341)
                        +++..+..++.++...|+|++|+++|..+.+..+.   +.+...+|.+|.+++++++ ++.|.     ...+...+..
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e---~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~ 1200 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE---SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQ 1200 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc---ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHH
Confidence              45555566666666666666666666665555433   2222345555555555553 22221     1223456678


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        263 LAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       263 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                      +|..+...|+|++|+.+|.++        ..|..++.+|.++|++++|++.++++.
T Consensus      1201 iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A         1201 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred             HHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            999999999999999999986        478999999999999999999999983

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.54  E-value=3.1e-14  Score=123.14  Aligned_cols=180  Identities=8%  Similarity=0.048  Sum_probs=142.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      .+|.++|..+...|.+++|+.+|.++        ..|..+|.++.++|++++|++.|+++     .++.+|..+..++..
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            48999999999999999999999987        46889999999999999999999999     478999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hCCHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR--EGHIERAS  277 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~  277 (341)
                      .|+++.|..+... +..+|+.     ...+..+|.+.|++++|+.++++++.+++.+...+..+|.+|.+  .++..+.+
T Consensus       190 ~~ef~lA~~~~l~-L~~~ad~-----l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl  263 (449)
T 1b89_A          190 GKEFRLAQMCGLH-IVVHADE-----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL  263 (449)
T ss_dssp             TTCHHHHHHTTTT-TTTCHHH-----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCcHHHHHHHHHH-HHhCHhh-----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999887775 3355444     44688899999999999999999999999999999999998855  45777777


Q ss_pred             HHHHHHHHhCC-----CchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16588        278 TYLQAAAASSP-----YLYETHYNQAVISNLAGDLQESYNIVKKSL  318 (341)
Q Consensus       278 ~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  318 (341)
                      +.|...+.+.|     .+...|..+..+|...++++.|+...-+..
T Consensus       264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~  309 (449)
T 1b89_A          264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP  309 (449)
T ss_dssp             HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence            77777777766     677799999999999999999988665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.49  E-value=7.7e-13  Score=117.21  Aligned_cols=169  Identities=10%  Similarity=-0.020  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----------------ELFNNLALCCFYSQQYDMVVTCFERALSL  216 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~  216 (341)
                      ......|..+...|++++|++.|.++++..+...                 .++..+|.+|...|++++|++++.+++..
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3455677888899999999999999999877542                 35889999999999999999999999987


Q ss_pred             cccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        217 ALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSID------SSHGLSQNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       217 ~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                      .+..    ....+...++.++...|++++|+.++++++...      +....++..+|.++...|+|++|+..+++++..
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            6654    113456778889999999999999999998763      233678899999999999999999999999875


Q ss_pred             C------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        287 S------PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       287 ~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      .      +....++..++.+|...|++++|..++++++...+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            2      23345899999999999999999999999997743

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.44  E-value=1.2e-12  Score=93.55  Aligned_cols=85  Identities=14%  Similarity=0.049  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q psy16588        136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  215 (341)
Q Consensus       136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  215 (341)
                      ++|+..|+++++.+|++..+++.+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+..|++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcccc
Q psy16588        216 LALNE  220 (341)
Q Consensus       216 ~~~~~  220 (341)
                      +.|..
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            77654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.42  E-value=4.3e-12  Score=90.58  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16588        205 MVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAA  284 (341)
Q Consensus       205 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  284 (341)
                      +|+..|+++++.+|.+  ..+++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|++++
T Consensus         3 ~a~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455555555555555  55555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HhCC
Q psy16588        285 ASSP  288 (341)
Q Consensus       285 ~~~p  288 (341)
                      ++.|
T Consensus        81 ~~~~   84 (115)
T 2kat_A           81 AAAQ   84 (115)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            5544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.5e-13  Score=97.31  Aligned_cols=94  Identities=13%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc------hhHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYL------YETHYN  296 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  296 (341)
                      ...++.+|.++...|++++|+..|+++++.+|.++.+++++|.++...|++++|+..|+++++++|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            56677777777777777777777777777777777777777777777777777777777777777776      667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q psy16588        297 QAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       297 l~~~~~~~g~~~~A~~~~~~  316 (341)
                      +|.++...|++++|+..+++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            77777777766666554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.39  E-value=7.4e-12  Score=85.00  Aligned_cols=82  Identities=24%  Similarity=0.302  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      ...++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++++|++..++.++|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             Hc
Q psy16588        303 LA  304 (341)
Q Consensus       303 ~~  304 (341)
                      ..
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            44

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.38  E-value=4.9e-13  Score=94.65  Aligned_cols=94  Identities=16%  Similarity=0.184  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHH
Q psy16588        186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH------GLS  259 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~  259 (341)
                      +...++.+|.++...|++++|+..|++++..+|.+  ..+++++|.++...|++++|+..|+++++++|++      ..+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            35567777778888888888888888888887777  7778888888888888888888888888888777      777


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHH
Q psy16588        260 QNNLAVLEAREGHIERASTYLQ  281 (341)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~  281 (341)
                      ++.+|.++...|+++.|+..++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHH
Confidence            7777887777777766655544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.36  E-value=1.2e-11  Score=83.92  Aligned_cols=83  Identities=27%  Similarity=0.466  Sum_probs=53.1

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16588        186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAV  265 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  265 (341)
                      +...++.+|.++...|++++|+.+|++++...|.+  ..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34556666666666666666666666666666666  6666666666666666666666666666666666666666666


Q ss_pred             HHHHh
Q psy16588        266 LEARE  270 (341)
Q Consensus       266 ~~~~~  270 (341)
                      ++...
T Consensus        86 ~~~~~   90 (91)
T 1na3_A           86 AKQKQ   90 (91)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.32  E-value=6.9e-11  Score=87.21  Aligned_cols=109  Identities=13%  Similarity=0.075  Sum_probs=56.6

Q ss_pred             ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHH
Q psy16588        202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERAS  277 (341)
Q Consensus       202 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~  277 (341)
                      ++++|+.+|+++.+.....    +.  +|.+|...+.+++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+
T Consensus        10 d~~~A~~~~~~aa~~g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMF----GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4455555555555443222    22  555555555555555555555543  345555555555555    45555555


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q psy16588        278 TYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDL  320 (341)
Q Consensus       278 ~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  320 (341)
                      .+|+++.+.  .++.++++||.+|..    .+++++|+.+|+++.+.
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            555555544  345555555555555    55555555555555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.31  E-value=5.3e-12  Score=87.42  Aligned_cols=90  Identities=16%  Similarity=0.063  Sum_probs=61.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLALSIDSSHGL-SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG  305 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  305 (341)
                      +..|.++...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++++|++..++.+        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            45566667777777777777777777777776 77777777777777777777777777777776666533        4


Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q psy16588        306 DLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       306 ~~~~A~~~~~~al~~~p~~  324 (341)
                      .+.+++..|+++...+|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            5566666666666666554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.30  E-value=1.6e-11  Score=85.21  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc
Q psy16588        149 DATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  220 (341)
Q Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  220 (341)
                      +|+++.+++.+|.+|...|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+..|++++++.|..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            566777777777777777777777777777777777777777777777777777777777777777766544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.30  E-value=2.3e-11  Score=108.55  Aligned_cols=122  Identities=11%  Similarity=-0.012  Sum_probs=54.6

Q ss_pred             HHhcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhc-----ccc-chHHHHHH
Q psy16588        163 HFYNDQPEVALLFYRRLLQM-----GLYN---AELFNNLALCCFYSQQYDMVVTCFERALSLA-----LNE-NAADVWYN  228 (341)
Q Consensus       163 ~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~-~~~~~~~~  228 (341)
                      +..+|++++|+..++++++.     .+++   ...+.+||.+|..+|+|++|+.++++++.+.     +++ .....+++
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34455555555555555442     2222   2334455555555555555555555554431     111 11344445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16588        229 ISHVAIGISDTRLAIQCLHLALSI-----DSSHG---LSQNNLAVLEAREGHIERASTYLQAAA  284 (341)
Q Consensus       229 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al  284 (341)
                      +|.+|..+|++++|+.+|++++++     .|+++   .....++.++..++.+++|...|.++.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555433     12222   233344444444444444444444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.30  E-value=9.7e-11  Score=86.41  Aligned_cols=109  Identities=14%  Similarity=0.055  Sum_probs=54.9

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHH
Q psy16588        168 QPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG----ISDTRLAI  243 (341)
Q Consensus       168 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  243 (341)
                      ++++|+.+|+++.+.......    +|.+|...+.+++|+.+|+++.+.  .+  +.+++++|.+|..    .+++++|+
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~--~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NS--GNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CC--HHHHHHHHHHHHcCCCCCccHHHHH
Confidence            344555555555544422222    455555444555555555555443  23  4555555555554    45555555


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHh
Q psy16588        244 QCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAAS  286 (341)
Q Consensus       244 ~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  286 (341)
                      .+|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+.
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            555555543  345555555555555    55555555555555544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.29  E-value=2.2e-11  Score=108.68  Aligned_cols=133  Identities=12%  Similarity=-0.022  Sum_probs=110.6

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhhc-----ccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---H
Q psy16588        192 NLALCCFYSQQYDMVVTCFERALSLA-----LNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSI-----DSSH---G  257 (341)
Q Consensus       192 ~la~~~~~~~~~~~A~~~~~~al~~~-----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~  257 (341)
                      ..+..+..+|+|++|+..+++++++.     +++ .....+.++|.+|..+|+|++|+.++++++++     .|++   .
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            34455778999999999999999873     222 23788999999999999999999999999976     2444   5


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYE---THYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                      ..+++||.+|..+|++++|+.+|++++++     .|+++.   ...+++.++..++.+++|...|.++.+..-++
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~  468 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN  468 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            67899999999999999999999999975     466654   66789999999999999999999987654333

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.28  E-value=2.8e-10  Score=92.17  Aligned_cols=177  Identities=15%  Similarity=0.102  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------------------CChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16588        136 PMSVKYYKLILKRDATCMEAIACIGVNHFYN---------------------DQPEVALLFYRRLLQMGLYNAELFNNLA  194 (341)
Q Consensus       136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------------------~~~~~A~~~~~~al~~~p~~~~~~~~la  194 (341)
                      .-.+.+++-.+..+|++.......+..|..-                     .++..|.++|.++....        ..+
T Consensus        49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~--------~ra  120 (301)
T 3u64_A           49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA--------LSS  120 (301)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH--------HHH
Confidence            3456788888899999977766555544321                     12445666666655421        111


Q ss_pred             HHHHHcCChhHHHH-----HHHH-HHhhccccchHHHHHHHHHHHHh-----cC------CHHHHHHHHHHHHhcCCC--
Q psy16588        195 LCCFYSQQYDMVVT-----CFER-ALSLALNENAADVWYNISHVAIG-----IS------DTRLAIQCLHLALSIDSS--  255 (341)
Q Consensus       195 ~~~~~~~~~~~A~~-----~~~~-al~~~~~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~p~--  255 (341)
                      .+ .....+.+++.     -+.+ .-+.+|++  ++.++..|.+...     .|      ....|...++++++++|+  
T Consensus       121 L~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~d--ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~  197 (301)
T 3u64_A          121 LE-TAYPGFTREVFSGDEQRLHKVLSRCTRVD--VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ  197 (301)
T ss_dssp             HH-HHSTTHHHHHTSSCHHHHHHHHTTCCGGG--HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             HH-HhCccHHHHHHhcchhhHHHHHHHcCccc--cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc
Confidence            11 11122222222     1222 33346677  7777776666532     13      357899999999999999  


Q ss_pred             CHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q psy16588        256 HGLSQNNLAVLEARE-----GHIERASTYLQAAAASSPYL-YETHYNQAVISNL-AGDLQESYNIVKKSLDLHPG  323 (341)
Q Consensus       256 ~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~  323 (341)
                      +..+|..+|.+|...     |+.++|..+|+++++++|+. ..+++.+|..+.. .|++++|..++++++...|.
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            677999999999995     99999999999999999975 9999999999988 49999999999999998776

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.28  E-value=1.8e-11  Score=84.97  Aligned_cols=65  Identities=11%  Similarity=0.052  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      +.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+..|++++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            55555555555555555555555555555555555555555555555555555555555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.24  E-value=1.7e-11  Score=84.80  Aligned_cols=90  Identities=9%  Similarity=0.048  Sum_probs=55.6

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAAD-VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      +..|.++...|++++|+..|+++++.+|.+  .. +++.+|.++...|++++|+..|+++++++|++..++..       
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence            345566666666666666666666666666  66 66666666666666666666666666666666655532       


Q ss_pred             hCCHHHHHHHHHHHHHhCCCc
Q psy16588        270 EGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~  290 (341)
                       +.+.+++..|++++..+|++
T Consensus        75 -~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 -KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -HHHHHHHHHHCCTTHHHHCC
T ss_pred             -HHHHHHHHHHHHHhccCccc
Confidence             44555666666655555543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.16  E-value=1.3e-09  Score=92.03  Aligned_cols=155  Identities=10%  Similarity=-0.007  Sum_probs=87.5

Q ss_pred             HHHHhCCCCHHHH--HHHHHHHHhcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcc
Q psy16588        144 LILKRDATCMEAI--ACIGVNHFYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLAL  218 (341)
Q Consensus       144 ~~l~~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  218 (341)
                      ++....|.+..+|  +..|..+...++   +.+|+.+|+++++++|+++.++..++.+|.....+             .+
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~  251 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HP  251 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SC
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CC
Confidence            3444456655443  344555554433   46778888888888888877777777776521100             01


Q ss_pred             ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16588        219 NENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  298 (341)
                      ..  ......          ...+... ..++..+|.++.++..++.++...|++++|+..+++++.++|+ ..+|..+|
T Consensus       252 ~~--~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG  317 (372)
T 3ly7_A          252 LD--EKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLG  317 (372)
T ss_dssp             CC--HHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             Cc--hhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            11  000000          0111111 1223445666666666666666667777777777777776653 45556666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        299 VISNLAGDLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       299 ~~~~~~g~~~~A~~~~~~al~~~p~~~  325 (341)
                      .++...|++++|+..|++|+.++|..+
T Consensus       318 ~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          318 KVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            777777777777777777777766553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.16  E-value=2.4e-09  Score=90.35  Aligned_cols=153  Identities=11%  Similarity=0.017  Sum_probs=90.3

Q ss_pred             cCCCCCchhHhhhcHHHHHHHcCC---chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH
Q psy16588        111 SQPDGPFIQVSRLNLAKIFEGLNN---MPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA  187 (341)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  187 (341)
                      ..|.++.. -..+..|..+...++   +.+|+.+|+++++.+|+++.++..++.+|....             ...+...
T Consensus       189 ~~p~~~~A-ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~-------------~~~~~~~  254 (372)
T 3ly7_A          189 ILPHRGAL-LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRH-------------SQHPLDE  254 (372)
T ss_dssp             HSCSSGGG-HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------HHSCCCH
T ss_pred             cCCCCHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-------------ccCCCch
Confidence            45666643 333344666665544   578999999999999999999999988887210             0011111


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      .....          ...+... ..++...|.+  +.++..++..+...|++++|+..+++++.++|+ ...|..+|.++
T Consensus       255 ~~~~~----------l~~a~~a-~~a~~~~~~~--a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~  320 (372)
T 3ly7_A          255 KQLAA----------LNTEIDN-IVTLPELNNL--SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVY  320 (372)
T ss_dssp             HHHHH----------HHHHHHH-HHTCGGGTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred             hhHHH----------HHHHHHH-HHhcccCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence            10000          0112221 1223444555  666666666666666666666666666666643 45556666666


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCch
Q psy16588        268 AREGHIERASTYLQAAAASSPYLY  291 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~  291 (341)
                      ...|++++|++.|++++.++|...
T Consensus       321 ~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          321 EMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCcC
Confidence            666666666666666666666543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.14  E-value=8.1e-10  Score=80.92  Aligned_cols=100  Identities=12%  Similarity=0.061  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhC-C-CchhHHHHHHHHHHHcCCHHHHHHH
Q psy16588        239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG---HIERASTYLQAAAASS-P-YLYETHYNQAVISNLAGDLQESYNI  313 (341)
Q Consensus       239 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~  313 (341)
                      ...+.+.|.+.+..++.+.++.+++|+++.+.+   +.++++..++..++.+ | ++.+.++++|..+.+.|+|++|..+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            456677777777777888888888888888877   6668888888888887 6 4577888899999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        314 VKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       314 ~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      ++++++++|+|..+......+....
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999999999988888877776654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.09  E-value=2e-09  Score=73.07  Aligned_cols=75  Identities=15%  Similarity=-0.031  Sum_probs=48.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16588        253 DSSHGLSQNNLAVLEAREGH---IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS  327 (341)
Q Consensus       253 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  327 (341)
                      +|+++.++..+|.+++..++   .++|...++++++++|+++.+++.+|..+++.|+|++|+.+|+++++.+|.++..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~   79 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR   79 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            45666666666666655444   5666666666666666666666666666666666666666666666666664333

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.06  E-value=3.7e-08  Score=88.43  Aligned_cols=190  Identities=13%  Similarity=-0.034  Sum_probs=141.5

Q ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q psy16588        136 PMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALS  215 (341)
Q Consensus       136 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  215 (341)
                      ......|++++...|..+..|+..+..+...|+.++|...|++++.. |.+...+...+...    +.++....+.....
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~~~~l~~~~~  270 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAVYGDLKRKYS  270 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999 99877776554431    11121111111110


Q ss_pred             ----------hccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Q psy16588        216 ----------LALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG-HIERASTYLQAAA  284 (341)
Q Consensus       216 ----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al  284 (341)
                                ..+..  ..+|...+......++.+.|...|+++ ...+....+|...+.+....+ +.+.|...|+.++
T Consensus       271 ~~~~~~~~~~~~~~~--~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al  347 (493)
T 2uy1_A          271 MGEAESAEKVFSKEL--DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL  347 (493)
T ss_dssp             ----------CHHHH--HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             hhccchhhhhccccc--HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence                      11122  567888888888888899999999999 433345667777777666666 6999999999999


Q ss_pred             HhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        285 ASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       285 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      +..|+++..|..++......|+.+.|...|+++    +.+...|.....+...
T Consensus       348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~  396 (493)
T 2uy1_A          348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFM  396 (493)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            998988888888888888999999999888887    3455556555555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.99  E-value=1.1e-08  Score=71.20  Aligned_cols=76  Identities=14%  Similarity=0.068  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSID-------SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY  295 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  295 (341)
                      +.-++.+|..++..|+|..|+.+|+++++..       +....++..+|.++.++|++++|+.++++++++.|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            3445566666666666666666666665542       223445555555555555555555555555555555555544


Q ss_pred             HHH
Q psy16588        296 NQA  298 (341)
Q Consensus       296 ~l~  298 (341)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.97  E-value=1e-08  Score=83.10  Aligned_cols=111  Identities=14%  Similarity=-0.001  Sum_probs=95.8

Q ss_pred             HHcCCCcHHHHHHHHHHHHH---c--C------ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhc-----CCHHHHH
Q psy16588        180 LQMGLYNAELFNNLALCCFY---S--Q------QYDMVVTCFERALSLALNENAADVWYNISHVAIGI-----SDTRLAI  243 (341)
Q Consensus       180 l~~~p~~~~~~~~la~~~~~---~--~------~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~  243 (341)
                      -+.+|++.+.+++.|.+...   .  |      ....|...++++++++|+.....+|..+|.+|...     |+.++|.
T Consensus       145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~  224 (301)
T 3u64_A          145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH  224 (301)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred             HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence            34678899988888877644   1  3      35689999999999999953377999999999995     9999999


Q ss_pred             HHHHHHHhcCCCC-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCc
Q psy16588        244 QCLHLALSIDSSH-GLSQNNLAVLEAR-EGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       244 ~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~  290 (341)
                      .+|+++++++|+. ...++.+|..+.. .|++++|..++++++..+|..
T Consensus       225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999999999975 9999999999988 599999999999999988764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.97  E-value=6.8e-09  Score=91.13  Aligned_cols=103  Identities=14%  Similarity=0.054  Sum_probs=86.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCchh---HHHH
Q psy16588        233 AIGISDTRLAIQCLHLALSI-----DSSH---GLSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYE---THYN  296 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~  296 (341)
                      ....|+|++|+..|++++++     .|++   ..++.++|.+|..+|+|++|+.++++++++     .|+++.   .+++
T Consensus       308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            34578999999999999985     3555   467889999999999999999999999975     355544   7889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHH
Q psy16588        297 QAVISNLAGDLQESYNIVKKSLDL-----HPGHSYSWDILRKLE  335 (341)
Q Consensus       297 l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~  335 (341)
                      ||.+|..+|++++|+.+|++++++     .|+++........+.
T Consensus       388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            999999999999999999999975     799988777665543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.95  E-value=2e-08  Score=73.57  Aligned_cols=90  Identities=10%  Similarity=0.070  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhhc-c-ccchHHHHHHHHHHHHhcCCHHHHHH
Q psy16588        170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQ---QYDMVVTCFERALSLA-L-NENAADVWYNISHVAIGISDTRLAIQ  244 (341)
Q Consensus       170 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~  244 (341)
                      ..+.+.|.+.+..++.+.++.+++|+++...+   ++++++..++.+++.+ | ..  .+.++++|..+++.|+|++|++
T Consensus        15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~--rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ--RDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH--HHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch--HHHHHHHHHHHHHccCHHHHHH
Confidence            34455555555555556666666666666655   4446666666666655 4 33  5566666666666666666666


Q ss_pred             HHHHHHhcCCCCHHHHH
Q psy16588        245 CLHLALSIDSSHGLSQN  261 (341)
Q Consensus       245 ~~~~al~~~p~~~~~~~  261 (341)
                      +++++++++|++..+..
T Consensus        93 y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHhcCCCCHHHHH
Confidence            66666666666555443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.94  E-value=1.2e-08  Score=89.75  Aligned_cols=109  Identities=11%  Similarity=-0.012  Sum_probs=89.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCchh---
Q psy16588        229 ISHVAIGISDTRLAIQCLHLALSID-----SSH---GLSQNNLAVLEAREGHIERASTYLQAAAAS-----SPYLYE---  292 (341)
Q Consensus       229 la~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---  292 (341)
                      ...-+..+|+|++|+..+++++++.     |++   ..++.++|.+|..+|+|++|+.++++++.+     .|+++.   
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3444567899999999999999763     444   567899999999999999999999999975     345544   


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHH
Q psy16588        293 THYNQAVISNLAGDLQESYNIVKKSLDL-----HPGHSYSWDILRKLEQY  337 (341)
Q Consensus       293 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~  337 (341)
                      .+++||.+|..+|++++|+.+|++++++     .|+++.....+..+...
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~  422 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC  422 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            7889999999999999999999999965     78998877665555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.92  E-value=3.1e-08  Score=67.10  Aligned_cols=70  Identities=17%  Similarity=0.216  Sum_probs=36.3

Q ss_pred             CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccc
Q psy16588        150 ATCMEAIACIGVNHFYNDQ---PEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN  219 (341)
Q Consensus       150 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  219 (341)
                      |++++.+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4455555555555543333   455555555555555555555555555555555555555555555555444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.91  E-value=9.3e-08  Score=85.85  Aligned_cols=199  Identities=10%  Similarity=-0.003  Sum_probs=152.3

Q ss_pred             hhhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----
Q psy16588        106 TASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQ----  181 (341)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----  181 (341)
                      ..++...|..+   ..|+..+..+...|+.++|...|++++.. |.+...+...+... ..+   +....+.....    
T Consensus       203 e~al~~~p~~~---~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~  274 (493)
T 2uy1_A          203 NYILDSFYYAE---EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEA  274 (493)
T ss_dssp             HHHHHHTTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----
T ss_pred             HHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhcc
Confidence            34455566665   77999999999999999999999999999 99877776555442 111   11111111110    


Q ss_pred             ------cCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q psy16588        182 ------MGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS-DTRLAIQCLHLALSIDS  254 (341)
Q Consensus       182 ------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  254 (341)
                            ..+....+|...+......++.+.|..+|.++ ...+..  ..+|...+.+....+ +.+.|...|+.+++..|
T Consensus       275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~--~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVG--PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCC--HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCC--hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence                  01123456888888888889999999999999 433334  667777777666555 69999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        255 SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      +.+..|...+......|+.+.|...|+++    +.....|......-...|+.+.+...+++++.
T Consensus       352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          352 DSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99998888888889999999999999997    34677888888888889999999999999885

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.86  E-value=8.1e-07  Score=79.79  Aligned_cols=157  Identities=7%  Similarity=0.015  Sum_probs=89.8

Q ss_pred             HHHHHcCCchHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHcCC-CcHHHHHHHHH
Q psy16588        127 KIFEGLNNMPMSVKYYKLILKRDA-TCMEAIACIGVNHFYNDQ---------PEVALLFYRRLLQMGL-YNAELFNNLAL  195 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~---------~~~A~~~~~~al~~~p-~~~~~~~~la~  195 (341)
                      ..+.+.|++++|+++|+++.+..- -+...|..+-.++...+.         .++|.++|++.....- -+...|..+..
T Consensus        34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~  113 (501)
T 4g26_A           34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR  113 (501)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            455566777777777776665421 144555555555543332         4566666666555421 24555666666


Q ss_pred             HHHHcCChhHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCH
Q psy16588        196 CCFYSQQYDMVVTCFERALSLAL-NENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREGHI  273 (341)
Q Consensus       196 ~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  273 (341)
                      .|...|++++|..+|++..+..- -+  ...|..+...|.+.|++++|.++|+++.+.. .-+..+|..+...+.+.|+.
T Consensus       114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~  191 (501)
T 4g26_A          114 LAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA  191 (501)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence            66666666666666666554321 12  4556666666666666666666666665543 22345566666666666666


Q ss_pred             HHHHHHHHHHHH
Q psy16588        274 ERASTYLQAAAA  285 (341)
Q Consensus       274 ~~A~~~~~~al~  285 (341)
                      ++|...+++..+
T Consensus       192 d~A~~ll~~Mr~  203 (501)
T 4g26_A          192 DKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.85  E-value=5.3e-08  Score=67.69  Aligned_cols=77  Identities=19%  Similarity=0.140  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccc-----cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALN-----ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNN  262 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  262 (341)
                      .-++.+|..++..++|..|+..|+++++..+.     .....++..+|.++.++|++++|+.++++++++.|++..+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            34455566666666666666666655554311     0124555556666666666666666666666666655555555


Q ss_pred             HH
Q psy16588        263 LA  264 (341)
Q Consensus       263 l~  264 (341)
                      ++
T Consensus        86 ~~   87 (104)
T 2v5f_A           86 LK   87 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.84  E-value=4.4e-08  Score=86.00  Aligned_cols=87  Identities=11%  Similarity=-0.034  Sum_probs=53.7

Q ss_pred             cCChhHHHHHHHHHHhh-----cccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSL-----ALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSI-----DSSH---GLSQNNLAV  265 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~-----~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~  265 (341)
                      .|+|++|+..|++++++     .|++ .....+.++|.+|..+|+|++|+.++++++++     .|++   ...++++|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45666666666666664     2222 22556666677777777777777777766654     2333   445666777


Q ss_pred             HHHHhCCHHHHHHHHHHHHHh
Q psy16588        266 LEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       266 ~~~~~g~~~~A~~~~~~al~~  286 (341)
                      +|..+|++++|+.+|++++++
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHH
Confidence            777777777777777777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.84  E-value=2.6e-08  Score=87.58  Aligned_cols=87  Identities=15%  Similarity=0.105  Sum_probs=47.1

Q ss_pred             HcCChhHHHHHHHHHHhh-----cccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSL-----ALNE-NAADVWYNISHVAIGISDTRLAIQCLHLALSI-----DSSH---GLSQNNLA  264 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~  264 (341)
                      .+|+|++|+..+++++++     .|++ .....+.++|.+|..+|+|++|+.++++++.+     .|++   ...++++|
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            445555555555555543     1122 22455556666666666666666666665543     1222   33455666


Q ss_pred             HHHHHhCCHHHHHHHHHHHHH
Q psy16588        265 VLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~  285 (341)
                      .+|..+|++++|+.+|+++++
T Consensus       379 ~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHH
Confidence            666666666666666666654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.81  E-value=2.4e-06  Score=76.75  Aligned_cols=169  Identities=13%  Similarity=0.059  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcC---------ChhHHHHHHHHHHhhccc-cchH
Q psy16588        155 AIACIGVNHFYNDQPEVALLFYRRLLQMG-LYNAELFNNLALCCFYSQ---------QYDMVVTCFERALSLALN-ENAA  223 (341)
Q Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~al~~~~~-~~~~  223 (341)
                      .+..+-..+.+.|+.++|+++|+++.+.. .-+...|..+-.++...+         ..++|.++|++.....-. +  .
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd--~  105 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN--E  105 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC--H
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC--H
Confidence            35556678889999999999999998753 235566766666665544         368899999998765322 3  7


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHH
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLSQNNLAVLEAREGHIERASTYLQAAAASS-PYLYETHYNQAVIS  301 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  301 (341)
                      ..|..+...|.+.|++++|.++|+++.+.. .-+..+|..+...|.+.|+.++|.+.|++..+.. .-+...|..+..+|
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            889999999999999999999999998764 3467889999999999999999999999998753 22566889999999


Q ss_pred             HHcCCHHHHHHHHHHHHhc--CCCCH
Q psy16588        302 NLAGDLQESYNIVKKSLDL--HPGHS  325 (341)
Q Consensus       302 ~~~g~~~~A~~~~~~al~~--~p~~~  325 (341)
                      .+.|+.++|..++++..+.  .|+..
T Consensus       186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred             hhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence            9999999999999998764  45543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.66  E-value=4.3e-07  Score=64.02  Aligned_cols=100  Identities=11%  Similarity=0.026  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHhC-C-CchhHHHHHHHHHHHcCCHHHHHHH
Q psy16588        239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER---ASTYLQAAAASS-P-YLYETHYNQAVISNLAGDLQESYNI  313 (341)
Q Consensus       239 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~  313 (341)
                      ...+...|.+.+..++....+.+++|+++.+..+..+   ++.+++..+..+ | ...+.++.||..+++.|+|++|..+
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3445555666666666667777777777776665555   777777766655 3 3445777788888888888888888


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        314 VKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       314 ~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      ++..++..|+|..+..+...+....
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8888888888877777776666543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.47  E-value=4.9e-06  Score=58.64  Aligned_cols=88  Identities=10%  Similarity=0.077  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhH---HHHHHHHHHhhc-c-ccchHHHHHHHHHHHHhcCCHHHHHHH
Q psy16588        171 VALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM---VVTCFERALSLA-L-NENAADVWYNISHVAIGISDTRLAIQC  245 (341)
Q Consensus       171 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~  245 (341)
                      .+...|.+....++...++.+++|+++....+...   ++.+++..+... | ..  .+.++.+|..+++.|+|++|+.+
T Consensus        19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~--Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ--RDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHhhhHHHHHHH
Confidence            34444444444444555555555555555444433   555555555543 2 22  44555555555555555555555


Q ss_pred             HHHHHhcCCCCHHHH
Q psy16588        246 LHLALSIDSSHGLSQ  260 (341)
Q Consensus       246 ~~~al~~~p~~~~~~  260 (341)
                      ++.+|+..|++..+.
T Consensus        97 ~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAK  111 (126)
T ss_dssp             HHHHHHHCTTCHHHH
T ss_pred             HHHHHHhCCCCHHHH
Confidence            555555555554443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.35  E-value=2.5e-05  Score=56.28  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=50.2

Q ss_pred             CCCcHHHHHHHHHHHHHcCCh------hHHHHHHHHHHhhcccc------chHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16588        183 GLYNAELFNNLALCCFYSQQY------DMVVTCFERALSLALNE------NAADVWYNISHVAIGISDTRLAIQCLHLAL  250 (341)
Q Consensus       183 ~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  250 (341)
                      .|++++.|..........|+.      ++-++.|++++..-|..      .....|...+.. ...++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            344555555444444444444      44445555554443332      112333333322 23345555555555555


Q ss_pred             hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        251 SIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       251 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                      ......+.+|...|....++|+...|.+.+.+++.+.|.
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            444444555555555555555555555555555555544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.31  E-value=1.7e-05  Score=57.09  Aligned_cols=110  Identities=16%  Similarity=0.105  Sum_probs=94.5

Q ss_pred             hccccchHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16588        216 LALNENAADVWYNISHVAIGISDT------RLAIQCLHLALSIDSSH--------GLSQNNLAVLEAREGHIERASTYLQ  281 (341)
Q Consensus       216 ~~~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~  281 (341)
                      +.|.+  ++.|........+.|+.      ++-++.|++++..-|..        ...|...+.. ...++.++|...|+
T Consensus         8 ~~p~~--yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~   84 (161)
T 4h7y_A            8 MMANN--PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ   84 (161)
T ss_dssp             --CCS--HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred             eCCCC--HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            46788  99999999999988998      89999999999877653        4466667755 56699999999999


Q ss_pred             HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        282 AAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       282 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  328 (341)
                      .++.++.....+|...|....++|+...|.+.+.+++.+.|...+..
T Consensus        85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            99999888888999999999999999999999999999999876644

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.13  E-value=0.00017  Score=51.61  Aligned_cols=85  Identities=11%  Similarity=0.002  Sum_probs=65.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy16588        254 SSHGLSQNNLAVLEAREGHI---ERASTYLQAAAASSPY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWD  329 (341)
Q Consensus       254 p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  329 (341)
                      .-...+.+++++++.+..+.   .+++..++..+...|. ..+.++.+|..++++|+|++|..+.+..++..|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            44567778888888776654   4678888888887774 4567888888888888888888888888888888888887


Q ss_pred             HHHHHHHHh
Q psy16588        330 ILRKLEQYF  338 (341)
Q Consensus       330 ~l~~~~~~~  338 (341)
                      +...+....
T Consensus       116 Lk~~Ie~~i  124 (144)
T 1y8m_A          116 LKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777766544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.11  E-value=8.6e-05  Score=52.43  Aligned_cols=83  Identities=11%  Similarity=-0.008  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16588        256 HGLSQNNLAVLEAREGHI---ERASTYLQAAAASSPY-LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDIL  331 (341)
Q Consensus       256 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  331 (341)
                      .+.+.+++|+++.+..+.   .+++..++..+..+|. ..+.++.+|..+.+.|+|++|..+.+..++..|+|..+..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            456777777777666543   4577777777777663 355777788888888888888888888888888887777777


Q ss_pred             HHHHHHh
Q psy16588        332 RKLEQYF  338 (341)
Q Consensus       332 ~~~~~~~  338 (341)
                      ..+....
T Consensus       119 ~~Ie~ki  125 (134)
T 3o48_A          119 SMVEDKI  125 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.02  E-value=6.1e-05  Score=55.52  Aligned_cols=27  Identities=15%  Similarity=0.078  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        225 VWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                      ++..+|.+++..++|..|...|++++.
T Consensus        65 ~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           65 LLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            444555555555555555555555443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.00  E-value=4.9e-05  Score=56.00  Aligned_cols=131  Identities=14%  Similarity=0.033  Sum_probs=79.0

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCcHHH
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDATC---------MEAIACIGVNHFYNDQPEVALLFYRRLLQMG---LYNAEL  189 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~  189 (341)
                      .+.-...++..|.|+.|+.....++....++         .+++..+|..++..++|..|...|+++++..   +.....
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4444567788999999999888876653222         3477889999999999999999999987642   222211


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      ...++.    ...+.       ..... +.+  .++.+.++.||.+.+++++|+..++..- .....+.+...||..|
T Consensus       103 ~~~~~~----~ss~p-------~s~~~-~~e--~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          103 RPSTGN----SASTP-------QSQCL-PSE--IEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             -------------------------CC-CCH--HHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             cccccc----cCCCc-------ccccc-cch--HHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence            101110    00000       01111 223  6777888888888888888888766532 2234466666666554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.80  E-value=0.0016  Score=46.67  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=36.5

Q ss_pred             cHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        186 NAELFNNLALCCFYSQQY---DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQ  260 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  260 (341)
                      ...+.+++|+++....+.   .+++.+++..+...|.. ..+.++.+|..++++|+|++|..+.+..|+..|++..+.
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            444555555555544332   24555555555444421 144555555555555555555555555555555554433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.77  E-value=0.00078  Score=47.59  Aligned_cols=72  Identities=10%  Similarity=0.045  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHcCCh---hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16588        187 AELFNNLALCCFYSQQY---DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS  259 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  259 (341)
                      +.+.+++|+++.+..+.   .+++.+++..++..|.. ..+.++.+|..+.+.|+|++|..+.+.+++..|++..+
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            34444444444443322   23444444444443311 13444444444444444444444444444444444433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.001  Score=61.91  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=67.8

Q ss_pred             hhHHHHHHHHHHhhccccchHHHHHHHHHHH--Hhc-CCHHHHHHHHHHHHhc--------CCCC----------HHHHH
Q psy16588        203 YDMVVTCFERALSLALNENAADVWYNISHVA--IGI-SDTRLAIQCLHLALSI--------DSSH----------GLSQN  261 (341)
Q Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~--~~~-g~~~~A~~~~~~al~~--------~p~~----------~~~~~  261 (341)
                      ++.|+..+++....+|..  . .++..+.+.  ... .+--+|+..+.+.++.        .+.+          ...+.
T Consensus       265 ~~~a~~~le~L~~~~p~~--~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~  341 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIH--D-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLN  341 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGG--H-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCch--h-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHH
Confidence            466777777777766654  2 222222221  111 2233555555555531        1121          23455


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        262 NLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                      .-+..+...|+++-|+.+-++++...|.....|+.|+.+|..+|+++.|+-.+.-+
T Consensus       342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            55666777788888888888888888888888888888888888888877665443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.39  E-value=0.011  Score=50.84  Aligned_cols=167  Identities=13%  Similarity=0.059  Sum_probs=114.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHh-cCChHHHHHHHHHHHHcCCCcHH-----
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEA-----IACIGVNHFY-NDQPEVALLFYRRLLQMGLYNAE-----  188 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-----~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~-----  188 (341)
                      .+.+.+|..|...|++++-..++.......+.-+.+     ...+-..+.. -+..+.-++....+++...+.-.     
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667889999999999999888887765443332222     2233333333 24455556666666654322211     


Q ss_pred             -HHHHHHHHHHHcCChhHHHHHHHHHHhhccc----cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----
Q psy16588        189 -LFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAIGISDTRLAIQCLHLALSID---SSH----  256 (341)
Q Consensus       189 -~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~----  256 (341)
                       .-..+|..|+..|+|.+|...+.+..+.-..    ....+++.....+|...+++.++...|.++....   +.+    
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence             2337899999999999999888888775322    1446778888889999999999999998887543   122    


Q ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHh
Q psy16588        257 GLSQNNLAVLEA-REGHIERASTYLQAAAAS  286 (341)
Q Consensus       257 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~  286 (341)
                      +.....-|.++. ..++|..|...|-++++.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            334556677788 799999999999888754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.38  E-value=0.025  Score=53.76  Aligned_cols=157  Identities=10%  Similarity=-0.025  Sum_probs=89.2

Q ss_pred             HHHHcCCchHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH
Q psy16588        128 IFEGLNNMPMSVK-YYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV  206 (341)
Q Consensus       128 ~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  206 (341)
                      .....+++++|.. ++..    -+ +...+..+...+...|.+++|++..+        ++...+   ......|++++|
T Consensus       608 ~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A  671 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLA  671 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHH
Confidence            3445788888766 4411    11 02223556666677788887776553        222222   234567888888


Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        207 VTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSI--------DSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       207 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      .+..+..     ++  ...|..+|..+.+.++++.|+.+|.++-..        ...+...+..++......|++..|..
T Consensus       672 ~~~~~~~-----~~--~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~  744 (814)
T 3mkq_A          672 RDLLTDE-----SA--EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFN  744 (814)
T ss_dssp             HHHHTTC-----CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhh-----Cc--HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHH
Confidence            7775432     44  678888888888888888888888875221        13334444455555555566655555


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q psy16588        279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVK  315 (341)
Q Consensus       279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  315 (341)
                      .|.+.     .+   ......+|.+.+++++|+..-+
T Consensus       745 ~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          745 AYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             HHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHc-----CC---HHHHHHHHHHcCChHHHHHHHH
Confidence            54332     01   1223344555666666655444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.0046  Score=57.63  Aligned_cols=117  Identities=12%  Similarity=0.098  Sum_probs=79.9

Q ss_pred             cCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--H-cCChhHHHHHHHHHHhh--------cccc--------chHHH
Q psy16588        166 NDQ-PEVALLFYRRLLQMGLYNAELFNNLALCCF--Y-SQQYDMVVTCFERALSL--------ALNE--------NAADV  225 (341)
Q Consensus       166 ~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~-~~~~~~A~~~~~~al~~--------~~~~--------~~~~~  225 (341)
                      .++ ++.|+.++++....+|.....+ ..+.+..  . ..+--+|+..+.+.++.        .+.+        .....
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            344 5778888888888888654332 2222221  1 12334566666666532        1111        00335


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        226 WYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      +..-+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.+.-+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            5556777788899999999999999999999999999999999999999998777655

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.30  E-value=0.025  Score=48.61  Aligned_cols=168  Identities=8%  Similarity=-0.042  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHH-cCChhHHHHHHHHHHhhccccc----hH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNA-----ELFNNLALCCFY-SQQYDMVVTCFERALSLALNEN----AA  223 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~----~~  223 (341)
                      .+.+.+|..|...|+.++-.+++......-+.-+     .....+-..+.. .+..+.-++.+..+++......    ..
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568899999999999998888887654433222     222233333332 3455666667777766543331    11


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCchh--
Q psy16588        224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSS--H----GLSQNNLAVLEAREGHIERASTYLQAAAASS---PYLYE--  292 (341)
Q Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~--  292 (341)
                      .+-..+|..|+..|+|.+|.+.+.+.++....  +    .+++..-..+|...+++.++...+.++....   +.++.  
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence            23447899999999999999999988874322  1    4567777888999999999999999997653   12232  


Q ss_pred             --HHHHHHHHHH-HcCCHHHHHHHHHHHHhcC
Q psy16588        293 --THYNQAVISN-LAGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       293 --~~~~l~~~~~-~~g~~~~A~~~~~~al~~~  321 (341)
                        ....-|..+. ..++|.+|..+|-+++.-.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence              4456678888 8999999999999987543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.12  E-value=0.045  Score=40.34  Aligned_cols=165  Identities=12%  Similarity=0.015  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh--c--------------
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL--A--------------  217 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~--------------  217 (341)
                      +....++..++..|++..++-.+..     -+.....+.-+.||...++|..|+.+++..+.-  +              
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            3444455555555555555544331     233444445555555556666666655555521  1              


Q ss_pred             -cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-----------HHHH------HhCCHHHHH--
Q psy16588        218 -LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA-----------VLEA------REGHIERAS--  277 (341)
Q Consensus       218 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-----------~~~~------~~g~~~~A~--  277 (341)
                       |.+ ....+..+|.++.+.|+-++|+.++.......|-.+.+-+.+-           .+..      +...+....  
T Consensus       109 d~~D-kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~l  187 (242)
T 3kae_A          109 DPGD-EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEF  187 (242)
T ss_dssp             CTTC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHH
T ss_pred             ccch-HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHH
Confidence             111 1223445666666666666666666666555443221110000           0000      000000111  


Q ss_pred             ------HHHHHHHHhCCCchh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        278 ------TYLQAAAASSPYLYE-THYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       278 ------~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                            ...++..+.-|.... .....+..|+..|-.++...+|...-..+|..
T Consensus       188 He~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F  241 (242)
T 3kae_A          188 HESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF  241 (242)
T ss_dssp             HHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred             HHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence                  223333334454443 33456778899999999999999999988864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.98  E-value=0.042  Score=44.03  Aligned_cols=58  Identities=10%  Similarity=0.051  Sum_probs=44.2

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc
Q psy16588        163 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE  220 (341)
Q Consensus       163 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  220 (341)
                      ..+.|++++|+......++.+|.+......+..+++-.|+|+.|.+.++.+.+++|..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            4456777777777777777777777777777777777777777777777777777776

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.94  E-value=0.06  Score=51.12  Aligned_cols=155  Identities=12%  Similarity=0.018  Sum_probs=87.9

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChh
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYD  204 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  204 (341)
                      +...+...|..++|+...+        ++...+.   .....|++++|.+..+     ..++...|..+|..+...++++
T Consensus       635 ~~~~l~~~~~~~~a~~~~~--------~~~~~f~---~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~  698 (814)
T 3mkq_A          635 IARFLEGQEYYEEALNISP--------DQDQKFE---LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFK  698 (814)
T ss_dssp             HHHHHHHTTCHHHHHHHCC--------CHHHHHH---HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCCChHHheecCC--------Ccchhee---hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHH
Confidence            3345556666666655432        2332233   3456799999988854     3467889999999999999999


Q ss_pred             HHHHHHHHHHhhc--------cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16588        205 MVVTCFERALSLA--------LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       205 ~A~~~~~~al~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      .|+.+|.++-...        ..+  .+.+..++......|++..|...|.+.=     +.   .....+|.+.+++++|
T Consensus       699 ~A~~~y~~~~d~~~l~~l~~~~~~--~~~~~~~~~~a~~~~~~~~A~~~~~~~g-----~~---~~a~~~~~~~~~~~~A  768 (814)
T 3mkq_A          699 LAIEAFTNAHDLESLFLLHSSFNN--KEGLVTLAKDAETTGKFNLAFNAYWIAG-----DI---QGAKDLLIKSQRFSEA  768 (814)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHT-----CH---HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHccChhhhHHHHHHcCC--HHHHHHHHHHHHHcCchHHHHHHHHHcC-----CH---HHHHHHHHHcCChHHH
Confidence            9999999873321        112  3334455555555555555554443320     00   1112344555555555


Q ss_pred             HHHHHHHHHhCCCc---hhHHHHHHHHHHHcCCHH
Q psy16588        277 STYLQAAAASSPYL---YETHYNQAVISNLAGDLQ  308 (341)
Q Consensus       277 ~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~  308 (341)
                      +..-++   ..|..   ..+....+.-+...|+.+
T Consensus       769 ~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~  800 (814)
T 3mkq_A          769 AFLGST---YGLGDNEVNDIVTKWKENLILNGKNT  800 (814)
T ss_dssp             HHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHH---hCCChHHHHHHHHHHHHHHHhccchh
Confidence            554433   23332   134445555555566543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.023  Score=42.58  Aligned_cols=102  Identities=8%  Similarity=0.039  Sum_probs=58.9

Q ss_pred             HHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16588        128 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV  207 (341)
Q Consensus       128 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  207 (341)
                      ...+.|+++.|.++.+..     ++...|..+|......|+++-|+.+|+++-.        +..+..+|...|+.+.-.
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence            445677777777776654     4566777777777777777777777776532        123344555556655444


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16588        208 TCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA  249 (341)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  249 (341)
                      ..-+.+....  +     +.....+++.+|+++++++.|.+.
T Consensus        81 kla~iA~~~g--~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           81 KMQNIAQTRE--D-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHTT--C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCc--c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            3333332221  1     122233455667777777666553

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.83  E-value=0.035  Score=47.90  Aligned_cols=108  Identities=12%  Similarity=0.008  Sum_probs=66.4

Q ss_pred             HHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q psy16588        197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA-IQCLHLALSIDSSHGLSQNNLAVLEAREGHIER  275 (341)
Q Consensus       197 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  275 (341)
                      ....|+.+.|...+++++.+..........         ...|-.+ ...+++..      ..+...++..+...|++.+
T Consensus       125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~---------~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~~  189 (388)
T 2ff4_A          125 AAAAGRFEQASRHLSAALREWRGPVLDDLR---------DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRASA  189 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhcCCCCCCCCC---------chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHH
Confidence            334578888888888888885443101000         0111111 11111111      1234455667777788888


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        276 ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       276 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ++..+.+++..+|-+...|..+..++...|+..+|+..|+++..
T Consensus       190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888888888887777888888888888888888777776643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.81  E-value=0.031  Score=44.80  Aligned_cols=121  Identities=4%  Similarity=-0.194  Sum_probs=82.6

Q ss_pred             HHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHH
Q psy16588        128 IFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVV  207 (341)
Q Consensus       128 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  207 (341)
                      ..++.|++++++..+...++.+|.+......+...+.-.|++++|.+-++.+.+++|.....-..+-..       -.|.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE   78 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAA   78 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHH
Confidence            456789999999999999999999999999999999999999999999999999999875432221111       1111


Q ss_pred             HHHHHHHhh--cccc-c---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy16588        208 TCFERALSL--ALNE-N---AADVWYNISHVAIGISDTRLAIQCLHLALSIDSS  255 (341)
Q Consensus       208 ~~~~~al~~--~~~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  255 (341)
                      ..=.+.+.-  .|.. .   .......-+......|+.++|...-.++++..|.
T Consensus        79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence            111112211  1111 0   0222333344555678888888888888777654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.69  E-value=0.037  Score=53.08  Aligned_cols=99  Identities=10%  Similarity=0.094  Sum_probs=80.9

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-----ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHH
Q psy16588        186 NAELFNNLALCCFYSQQYDMVVTCFERALSL-----ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-SSHGLS  259 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~  259 (341)
                      ....+..+-..|.+.|+.++|..+|.+..+.     .|+   ...|+.+...|.+.|++++|.++|+++.+.. .-+..+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            3456888899999999999999999876532     333   7889999999999999999999999998754 345778


Q ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHHHhC
Q psy16588        260 QNNLAVLEAREGH-IERASTYLQAAAASS  287 (341)
Q Consensus       260 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~  287 (341)
                      |..+..++.+.|+ .++|...|++..+..
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            8888888999887 478889999988754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.3  Score=42.94  Aligned_cols=97  Identities=13%  Similarity=-0.034  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCCCch--
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSID--SS----HGLSQNNLAVLEAREGHIERASTYLQAAAA---SSPYLY--  291 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~--  291 (341)
                      ......++.++...|++.+|...+.....-.  ..    -.+++.....+|...+++.+|...++++..   ..+..+  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            4445666777777777777776666654221  11    134555566666667777777766666532   112222  


Q ss_pred             --hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        292 --ETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       292 --~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                        ..+...|.++...++|.+|..+|..++.
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence              2444566666666777777666666654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.015  Score=50.94  Aligned_cols=99  Identities=12%  Similarity=-0.001  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMG---LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADVW  226 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~  226 (341)
                      .++..+|..|...|++++|.+.|.++....   ..-.+.+..+..++...+++..+...+.++.......    ......
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            345556666666666666666666655432   1223455555555555666666666666554432111    112233


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        227 YNISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      ...|.++...++|.+|...|-+++..
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            33444555555666665555555443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.56  E-value=0.02  Score=50.87  Aligned_cols=79  Identities=18%  Similarity=0.090  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16588        225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL  303 (341)
Q Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  303 (341)
                      .+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+.+|-+++......+.+..++...+.+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            4455566665556666666666666666666666666666666666666666666666665544455555555555443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.15  Score=38.14  Aligned_cols=110  Identities=8%  Similarity=0.038  Sum_probs=74.2

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHH
Q psy16588        151 TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNIS  230 (341)
Q Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la  230 (341)
                      .+++..+.++   ...|+++.|.+..+..     ++...|..||......|+++-|..+|.++-..          -.+.
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------~~L~   67 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------DKLS   67 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------HHHH
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------HHHH
Confidence            3555566555   4669999998887765     67888999999999999999999999886322          2233


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      .+|.-.|+.+.-.+..+.+.....     +.....++..+|+++++++.|.+.
T Consensus        68 ~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           68 FLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            445556776665555555443321     122234567889999999888654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.47  E-value=0.091  Score=50.50  Aligned_cols=98  Identities=9%  Similarity=0.001  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--cccchHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQM----GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--LNENAADVW  226 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~  226 (341)
                      ...+..+...|.+.|+.++|..+|.+..+.    ..-+...|+.+-..|.+.|++++|.++|++..+..  |+   ...|
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD---vvTY  203 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD---LLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc---HHHH
Confidence            345778999999999999999999876543    34477889999999999999999999999997754  43   7888


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q psy16588        227 YNISHVAIGISD-TRLAIQCLHLALSID  253 (341)
Q Consensus       227 ~~la~~~~~~g~-~~~A~~~~~~al~~~  253 (341)
                      ..+..++.+.|+ .++|.++|+++.+..
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            888889999988 578999999998765

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.42  E-value=0.037  Score=49.19  Aligned_cols=79  Identities=15%  Similarity=0.094  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      ..+..+|.+......+..|..+|.+|..+.|++...++.||.+....|+.-+|+.+|-+++....-++.++..+..+-.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999887778888877766644

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.40  E-value=0.06  Score=46.44  Aligned_cols=111  Identities=11%  Similarity=-0.112  Sum_probs=77.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHH-HHHHHHHHhhccccchHHHHHHHHHHHHhcCC
Q psy16588        160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMV-VTCFERALSLALNENAADVWYNISHVAIGISD  238 (341)
Q Consensus       160 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~  238 (341)
                      |......|+.+.|...+.+++.+.....-.     .+.  ...|-.+ ...+++      ..  ..+...++..+...|+
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~-----~~~--~~~w~~~~r~~l~~------~~--~~a~~~~~~~~l~~g~  186 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLD-----DLR--DFQFVEPFATALVE------DK--VLAHTAKAEAEIACGR  186 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTG-----GGT--TSTTHHHHHHHHHH------HH--HHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCC-----CCC--chhHHHHHHHHHHH------HH--HHHHHHHHHHHHHCCC
Confidence            333345688899999999998875332110     000  0122211 111111      11  4566677888889999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        239 TRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       239 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      +.+++..+..++..+|-+..++..+..++...|+..+|+..|+++-.
T Consensus       187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988754

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.17  Score=44.82  Aligned_cols=191  Identities=12%  Similarity=0.065  Sum_probs=89.2

Q ss_pred             HHHHHcCCchHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHhcCChHHHH----------HHHHHHHH----
Q psy16588        127 KIFEGLNNMPMSVKYYKLILK-----------RDATCMEAIACIGVNHFYNDQPEVAL----------LFYRRLLQ----  181 (341)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~al~----  181 (341)
                      ..++..+++++|..+....+.           .+.-.+.+|+..+.++...|+.....          ..+..++.    
T Consensus       144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l  223 (523)
T 4b4t_S          144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL  223 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence            445678889988887765541           12334667888888887777665422          22222222    


Q ss_pred             -cCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16588        182 -MGLY-NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDS  254 (341)
Q Consensus       182 -~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  254 (341)
                       .++. ...+++.+-..|...+.|++|..+..++.  .|..     .....++.+|.++.-+++|.+|.+++..|++..|
T Consensus       224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence             2222 35578888899999999999999999985  3322     3356788899999999999999999999999887


Q ss_pred             CCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHcCCHH---HHHHHHHHHHhcC
Q psy16588        255 SHG-------LSQNNLAVLEAREGHIERASTYLQAAAASSPYL---YETHYNQAVISNLAGDLQ---ESYNIVKKSLDLH  321 (341)
Q Consensus       255 ~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~  321 (341)
                      .+.       .++..+..+-.-+|+..+-. .|     ..+..   ...|..++.++ +.|+..   .++.-++..+..+
T Consensus       302 ~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~-lf-----~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~D  374 (523)
T 4b4t_S          302 HNSKSLGFLQQSNKLHCCIQLLMGDIPELS-FF-----HQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLKD  374 (523)
T ss_dssp             CSSSCSHHHHHHHHHHHHHHHHHTCCCCHH-HH-----TTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHT
T ss_pred             cchhhhhHHHHHHHHHHhHHhhcCCCCChH-Hh-----hchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceeccC
Confidence            652       23333344444467754311 11     11221   12356666665 456654   4444555555555


Q ss_pred             CCCHH
Q psy16588        322 PGHSY  326 (341)
Q Consensus       322 p~~~~  326 (341)
                      -+..-
T Consensus       375 gty~L  379 (523)
T 4b4t_S          375 DTYQL  379 (523)
T ss_dssp             TCTHH
T ss_pred             ChhHH
Confidence            54433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.04  E-value=0.88  Score=41.69  Aligned_cols=125  Identities=14%  Similarity=0.044  Sum_probs=81.8

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREG  271 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  271 (341)
                      +.......+.+.|...+.+......-+  .....+..++.-+...+...++...+.+......++...-. ++....+.|
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~r~Alr~~  299 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER-RVRMALGTG  299 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHH-HHHHHHHCC
Confidence            444444567788888887765432222  11233444454455555456777777776654444333333 334455779


Q ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        272 HIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       272 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      +++.|..+|++.-..........+.+|.++...|+.++|..+|+++..
T Consensus       300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            999999999876443334566789999999999999999999999875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.02  E-value=0.42  Score=47.48  Aligned_cols=144  Identities=8%  Similarity=-0.037  Sum_probs=100.4

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----------------------
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM----------------------  182 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------------  182 (341)
                      +...+...+.++-+.+    .+...+.++...+.+|.++...|++++|..+|+++..-                      
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            3445666777766654    34566778888899999999999999999999886321                      


Q ss_pred             -CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        183 -GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE---NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL  258 (341)
Q Consensus       183 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  258 (341)
                       ....+..|..+..++...+.++.+++..+.|++..+.+   .....|.++-..+...|+|++|...+...=.. .....
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~  972 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKS  972 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHH
Confidence             11123456777888889999999999999999876433   12347888888899999999998877544221 22234


Q ss_pred             HHHHHHHHHHHhCCH
Q psy16588        259 SQNNLAVLEAREGHI  273 (341)
Q Consensus       259 ~~~~l~~~~~~~g~~  273 (341)
                      .+..+.....+.|+.
T Consensus       973 cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          973 CLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             HHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHhCCCh
Confidence            444454444444443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.91  E-value=0.34  Score=35.79  Aligned_cols=163  Identities=10%  Similarity=-0.025  Sum_probs=110.7

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----------------
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM-----------------  182 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----------------  182 (341)
                      .-.+.++.+++-.|+|.+++-++..     -+...+.+..+.||...+++..|+..++..+.-                 
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            4466778899999999999877654     345778889999999999999999999999842                 


Q ss_pred             CCCcHH-HHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHH-----------HHHh-cCC-----HHHHH-
Q psy16588        183 GLYNAE-LFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH-----------VAIG-ISD-----TRLAI-  243 (341)
Q Consensus       183 ~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~-----------~~~~-~g~-----~~~A~-  243 (341)
                      +|.+.+ .+..+|.++...|+.++|+.++.......|-.  ..+-+.+-.           +... ...     +.... 
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf--~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~  186 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF--SPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIE  186 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH--HHHHHHHHTTCCCCCC-----------CHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc--chHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHH
Confidence            233333 35678999999999999999999998876554  222111100           0000 000     01111 


Q ss_pred             -------HHHHHHHhcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        244 -------QCLHLALSIDSSHGL-SQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       244 -------~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                             ...++-.+.-|.... ...+.+.-|+.+|-.++...+|...-..+|.
T Consensus       187 lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          187 FHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence                   122223333354433 3345677889999999999999999888885

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.061  Score=47.08  Aligned_cols=100  Identities=9%  Similarity=0.075  Sum_probs=66.1

Q ss_pred             hhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcH----H
Q psy16588        118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDA---TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG--LYNA----E  188 (341)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~----~  188 (341)
                      +..+...+|..|...|++++|.+.|.++.....   .-.+.+.....++...+++..+..++.++....  ..++    .
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            335667778888888888888888887765432   235666777777777788888888887775431  1121    2


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16588        189 LFNNLALCCFYSQQYDMVVTCFERALSLA  217 (341)
Q Consensus       189 ~~~~la~~~~~~~~~~~A~~~~~~al~~~  217 (341)
                      .....|.++...++|.+|...|..++.-.
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            33445666667778888877777766543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.034  Score=49.14  Aligned_cols=126  Identities=17%  Similarity=0.096  Sum_probs=41.2

Q ss_pred             HHhcCChHHHHHHHHHHHH-----------cCCCcHHHHHHHHHHHHHcCChhHHHH----------HHHHHHhh----c
Q psy16588        163 HFYNDQPEVALLFYRRLLQ-----------MGLYNAELFNNLALCCFYSQQYDMVVT----------CFERALSL----A  217 (341)
Q Consensus       163 ~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~~~~~~A~~----------~~~~al~~----~  217 (341)
                      +...+++++|.++-...+.           +++-.+.+|+.++.++...|+......          .+-.++..    .
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~  225 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH  225 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence            3455667776666554431           122334456666666655555543211          11111111    1


Q ss_pred             cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16588        218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      .......+++.+-..|...+.++.|..+..++.  .|..       ...++.+|.++..+++|.+|.+++..|+...|.+
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            111234555666666666666666666666653  2221       2344556666666666666666666666655544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.63  E-value=0.37  Score=47.84  Aligned_cols=146  Identities=13%  Similarity=0.051  Sum_probs=101.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--------------------
Q psy16588        158 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLA--------------------  217 (341)
Q Consensus       158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------  217 (341)
                      .+...+...+.++-+.+    .+...|.++...+.+|.++...|++++|..+|+++-.--                    
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            44455566677765543    445677788888999999999999999999998873210                    


Q ss_pred             cc-cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16588        218 LN-ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-G----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  291 (341)
Q Consensus       218 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  291 (341)
                      +. ......|..+..++.+.+.++.++++.+.|++..+.+ .    ..|.++=..+...|+|++|...+...-.. ..-.
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~  971 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK  971 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence            00 0123566778888899999999999999999876433 2    25677777888999999998887554221 1223


Q ss_pred             hHHHHHHHHHHHcCCHH
Q psy16588        292 ETHYNQAVISNLAGDLQ  308 (341)
Q Consensus       292 ~~~~~l~~~~~~~g~~~  308 (341)
                      +.+..|...+++.|+.+
T Consensus       972 ~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          972 SCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhCCChh
Confidence            45555655566555543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.68  E-value=2.1  Score=37.57  Aligned_cols=165  Identities=10%  Similarity=-0.024  Sum_probs=102.8

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHH---HH-hcCChHHHHHHHHHHHHc----CC-------
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVN---HF-YNDQPEVALLFYRRLLQM----GL-------  184 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~---~~-~~~~~~~A~~~~~~al~~----~p-------  184 (341)
                      .....+..++...|+++...+.+.-..+.......+...+...   +. .....+..  .....+..    ..       
T Consensus        57 r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~--~~~~~i~~l~~vte~kiflE~  134 (445)
T 4b4t_P           57 EVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLN--TRISVIETIRVVTENKIFVEV  134 (445)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHH--HHHHHHHCCSSSSSCCCCCCH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHhccchHHHH
Confidence            3344455677888888887776655544433333322222211   11 11222211  11122211    01       


Q ss_pred             CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc----cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC-
Q psy16588        185 YNAELFNNLALCCFYSQQYDMVVTCFERALSLA----LNENAADVWYNISHVAIGISDTRLAIQCLHLALS---IDSSH-  256 (341)
Q Consensus       185 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~-  256 (341)
                      ........|+.+|...|++.+|...+.....-.    ......+++.....++...+++.+|...++++..   ..+.. 
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            134556788999999999999999988875421    1114467888889999999999999999988742   12222 


Q ss_pred             ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy16588        257 ---GLSQNNLAVLEAREGHIERASTYLQAAAAS  286 (341)
Q Consensus       257 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  286 (341)
                         ...+...|.++...++|.+|-.+|..++..
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               345677888889999999999999888753

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.02  E-value=3.6  Score=37.70  Aligned_cols=187  Identities=7%  Similarity=-0.110  Sum_probs=122.5

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHhCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q psy16588        125 LAKIFEGLNNMPMSVKYYKLILKRDATCMEA----IACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYS  200 (341)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  200 (341)
                      ++.......+.+.|...+........-+...    +..++......+...++...+.+......++.. ....+...+..
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~  298 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGT  298 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHC
Confidence            3444455568888999988876543333222    223343444445466777788876655444433 44444455677


Q ss_pred             CChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------------C---C----C
Q psy16588        201 QQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID-----------------S---S----H  256 (341)
Q Consensus       201 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------p---~----~  256 (341)
                      |+++.|..+|+++-......  ....+.+|.++...|+.++|..+|+++....                 +   .    .
T Consensus       299 ~d~~~a~~~~~~l~~~~~~~--~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~  376 (618)
T 1qsa_A          299 GDRRGLNTWLARLPMEAKEK--DEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD  376 (618)
T ss_dssp             TCHHHHHHHHHHSCTTGGGS--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred             CCHHHHHHHHHHcccccccc--HhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHH
Confidence            99999999998876544445  7889999999999999999999999876421                 0   0    0


Q ss_pred             H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16588        257 G----LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKK  316 (341)
Q Consensus       257 ~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  316 (341)
                      .    ..-...+..+...|....|...+...+...  +..-...++.+....|.+..++....+
T Consensus       377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~  438 (618)
T 1qsa_A          377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA  438 (618)
T ss_dssp             CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            0    012344566778888888888888776542  234455677777888888877755543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.51  E-value=1.8  Score=41.48  Aligned_cols=196  Identities=13%  Similarity=0.053  Sum_probs=109.6

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCM--EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  197 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  197 (341)
                      .+-+.+|.++...++ +++.+.+..++..+....  .+-+.+|.++.-.|+.+....++..+.+...+...-...+|..+
T Consensus       456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl  534 (963)
T 4ady_A          456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL  534 (963)
T ss_dssp             HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence            455567777765554 467777777776443211  34457788888888887777777766664443333334455555


Q ss_pred             HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16588        198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      ...|+.+.+-...+.............+-+.+|..|...|+...-...+..+.....++..-...+|......|+.+.+.
T Consensus       535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~  614 (963)
T 4ady_A          535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVP  614 (963)
T ss_dssp             HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred             hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHH
Confidence            67788877776666655432111223445667888899999765555777766543333332333344444456554444


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHc--CC-HHHHHHHHHHHH
Q psy16588        278 TYLQAAAASSPYLYETHYNQAVISNLA--GD-LQESYNIVKKSL  318 (341)
Q Consensus       278 ~~~~~al~~~p~~~~~~~~l~~~~~~~--g~-~~~A~~~~~~al  318 (341)
                      ..+....+  ..++.+.+..+.++...  |+ ..+++..+.+..
T Consensus       615 rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          615 RIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             HHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            44433222  23445555444443332  22 256676666654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.67  E-value=6.3  Score=32.52  Aligned_cols=21  Identities=5%  Similarity=-0.094  Sum_probs=15.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHh
Q psy16588        299 VISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       299 ~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ..|...|+...|...|....+
T Consensus       196 L~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          196 FNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             HHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHH
Confidence            346678999999888877653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.34  E-value=12  Score=36.08  Aligned_cols=117  Identities=9%  Similarity=-0.010  Sum_probs=49.3

Q ss_pred             cCCchHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------cH----HHHHHHHHH
Q psy16588        132 LNNMPMSVKYYKLILKRD-ATC----MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY------NA----ELFNNLALC  196 (341)
Q Consensus       132 ~g~~~~A~~~~~~~l~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~----~~~~~la~~  196 (341)
                      .|+.++++..+.+.+... .++    .-+.+.+|.++...+  ++++.++...+.....      ..    .+-..||.+
T Consensus       387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            455555555555544321 111    223444444444333  3455555555543220      01    122344444


Q ss_pred             HHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        197 CFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       197 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                      +...++ +++.+.+...+..+.......+-+.+|.++...|+-+.....+..+.+
T Consensus       465 ~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e  518 (963)
T 4ady_A          465 AMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE  518 (963)
T ss_dssp             STTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             hcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence            443333 344444444443221110113344555566666655544444444443

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=87.82  E-value=5  Score=30.60  Aligned_cols=65  Identities=9%  Similarity=0.017  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSID  253 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  253 (341)
                      .+|...+..+ ..+...++.++|.-+....-....+..|...|..+...|++.+|.+.|+.+++..
T Consensus        81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~  145 (202)
T 3esl_A           81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN  145 (202)
T ss_dssp             HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            3444444443 1233456666666665544333336666666777777777777777777776654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.97  E-value=15  Score=35.76  Aligned_cols=52  Identities=17%  Similarity=0.094  Sum_probs=32.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy16588        159 IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERAL  214 (341)
Q Consensus       159 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  214 (341)
                      +...+...|.++-+    .+.+...|.++..-+.+|.+|...|++++|..+|+++-
T Consensus       816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA  867 (950)
T 4gq2_M          816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS  867 (950)
T ss_dssp             HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            44444555655543    33445566666666777777777777777777777653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.06  E-value=24  Score=34.28  Aligned_cols=35  Identities=0%  Similarity=-0.248  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHH
Q psy16588        292 ETHYNQAVISNLAGDLQESYNIVKKSLDL-HPGHSY  326 (341)
Q Consensus       292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~  326 (341)
                      ..|.....++.+.+-++-++...+.|++. .++++.
T Consensus       898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence            36777888889999999999999999965 344544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=84.15  E-value=6.6  Score=27.96  Aligned_cols=53  Identities=15%  Similarity=-0.031  Sum_probs=29.7

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAA  285 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  285 (341)
                      +..+|+-++-.+.+...+...+-++..+..+|.+|.+.|+..+|-+.+.+|.+
T Consensus       101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A          101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            34555555555555555444455566666666666666666666666666554

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=83.27  E-value=5  Score=24.88  Aligned_cols=35  Identities=6%  Similarity=0.048  Sum_probs=22.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI  330 (341)
Q Consensus       296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  330 (341)
                      .+|..+...|++++|..+|-+|+...|+-.+....
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i   56 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV   56 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            46666666677777777777777776665554433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=82.93  E-value=11  Score=26.94  Aligned_cols=52  Identities=17%  Similarity=0.040  Sum_probs=23.7

Q ss_pred             HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16588        198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALS  251 (341)
Q Consensus       198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (341)
                      ..+|+-++-.+.+...+...+-+  +..+..+|.+|.+.|+..+|.+.+.+|.+
T Consensus       102 v~~~KkDqLdki~~~~l~n~~~~--~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A          102 VIQGKRDKLEEIGREILKNNEVS--ASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHTTCHHHHHHHHHHHC--CCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccHhHHHHHHHHHhccCCCC--hHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            33444444444444433333333  45555555555555555555555555443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.79  E-value=20  Score=29.90  Aligned_cols=23  Identities=4%  Similarity=-0.003  Sum_probs=16.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        297 QAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       297 l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ....|...++...|...+....+
T Consensus       193 aVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          193 AVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHH
Confidence            33447788999999887665553

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=81.30  E-value=9.9  Score=27.52  Aligned_cols=46  Identities=15%  Similarity=0.065  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q psy16588        242 AIQCLHLALSI--DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS  287 (341)
Q Consensus       242 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  287 (341)
                      +...|.-+...  ....+..|...|..+...|++.+|...|+..++..
T Consensus        84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~  131 (152)
T 4a1g_A           84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ  131 (152)
T ss_dssp             HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            44444444432  23345555555555555566666666655555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-21
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-09
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	8e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.003
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.001
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (229), Expect = 1e-21
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
           P   V+  NL  +F     + +++ +++  +  D   ++A   +G         + A+  
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
           Y R L +   +A +  NLA   +     D+ +  + RA+   L  +  D + N+++    
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKE 283

Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
                 A  C + AL +  +H  S NNLA ++  +G+IE A    + A    P     H 
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343

Query: 296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLE 335
           N A +    G LQE+    K+++ + P  + ++    + L++++
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (188), Expect = 2e-16
 Identities = 33/191 (17%), Positives = 70/191 (36%), Gaps = 2/191 (1%)

Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
           P    + +NL  + +       +V  Y   L            +   ++     ++A+  
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
           YRR +++  +  + + NLA              C+  AL L      AD   N++++   
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317

Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
             +   A++    AL +      + +NLA +  ++G ++ A  + + A   SP   + + 
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 296 NQAVISNLAGD 306
           N         D
Sbjct: 378 NMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 37/227 (16%), Positives = 85/227 (37%), Gaps = 6/227 (2%)

Query: 116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLF 175
           P +  +  NL  +++    +  ++++Y+  L+     ++    +          E A+  
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 176 YRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIG 235
           Y   LQ       + ++L        + +    C+ +A+      N A  W N+  V   
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNA 181

Query: 236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHY 295
             +  LAI     A+++D +   +  NL  +       +RA      A + SP     H 
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241

Query: 296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW----DILRKLEQYF 338
           N A +    G +  + +  +++++L P    ++    + L++     
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 36/251 (14%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
           + LA       +   + ++   + +++      +  +   HF   + + +  F    ++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 183 GLYNAELFNNLALC--------------------------------CFYSQQYDMVVTCF 210
               AE ++NL                                          DM     
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 211 ERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE 270
               +L  N +   V  ++ ++   +     A  C   A+    +  ++ +NL  +   +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 271 GHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW-- 328
           G I  A  + + A    P   + + N   +   A     +     ++L L P H+     
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 329 --DILRKLEQY 337
              +  +    
Sbjct: 243 LACVYYEQGLI 253

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 24/217 (11%), Positives = 64/217 (29%), Gaps = 4/217 (1%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
               +++ L    ++   +   L       E    +G+        + A   +  +L++ 
Sbjct: 42  ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 101

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
                   N  +  +Y  +  +             N+    +W  ++   +     +  +
Sbjct: 102 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVL 161

Query: 244 QCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNL 303
           +        +              + +  +ER         + + +L ET++        
Sbjct: 162 KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 221

Query: 304 AGDLQESYNIVKKSLDLHPG----HSYSWDILRKLEQ 336
            GDL  +  + K ++  +      H Y+   L  L Q
Sbjct: 222 LGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 22/177 (12%), Positives = 47/177 (26%), Gaps = 6/177 (3%)

Query: 168 QPEVALLFYRRLLQMGLY----NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAA 223
           Q EV L    ++L          A+L     +         +    F +AL+  +  +  
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA--IRPDMP 71

Query: 224 DVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA 283
           +V+  +        +   A +     L +D ++  +  N  +     G  + A   L A 
Sbjct: 72  EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 131

Query: 284 AASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFSY 340
               P          +      + Q    + +              +   L      
Sbjct: 132 YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 188

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 7/177 (3%)

Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
           G   F   +   A   Y R +      A  + N ALC    QQ +  +    R  +L L+
Sbjct: 11  GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR--ALELD 68

Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279
             +    + +    + +     AI  L  A S+     L+  +          +  A   
Sbjct: 69  GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI-----PSALRIAKKK 123

Query: 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ 336
              +        E+  +  +   +A + +      +++ + H    +       +E 
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 7/181 (3%)

Query: 139 VKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCF 198
              Y   + R+           + +    QPE AL   RR L++   + +    L  C  
Sbjct: 24  AACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83

Query: 199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL 258
             + YD  +   +RA SLA           ++      S  R+A +    ++     H  
Sbjct: 84  EMESYDEAIANLQRAYSLAKE-------QRLNFGDDIPSALRIAKKKRWNSIEERRIHQE 136

Query: 259 SQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSL 318
           S+ +  +        ER     Q               QA I           + +   +
Sbjct: 137 SELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196

Query: 319 D 319
           D
Sbjct: 197 D 197

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 2/113 (1%)

Query: 186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQC 245
           +A+         F  ++Y     C+ RA  +  N   A  + N +   + +     A+  
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRA--ITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 246 LHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA 298
              AL +D     +   L   +      + A   LQ A + +        +  
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 20/192 (10%), Positives = 58/192 (30%), Gaps = 8/192 (4%)

Query: 138 SVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC 197
           S +Y +      A   ++              +     Y+++L   L  A          
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD-- 59

Query: 198 FYSQQYDMVVTCFERALSLALNENAADVWYNI-SHVAIGISDTRLAIQCLHLALSIDSSH 256
            ++  +   +T  +       N N ++V  N+   +          +Q L    ++D   
Sbjct: 60  LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC 119

Query: 257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKK 316
            +  + L ++  ++ H         ++ +          +   I+       ++ +  + 
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRH 177

Query: 317 SLDLHPGHSYSW 328
           +  L P +   +
Sbjct: 178 AAQLVPSNGQPY 189

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 6e-07
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
            L  I     +    VK           C   +  +G    Y +Q   A  +YR   Q+ 
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNI 229
             N + +N LA+       +   +  + R+  +A+         N+
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRS--IAVKFPFPAASTNL 226

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 8e-07
 Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 25/179 (13%)

Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
           GV        + AL  +  +      ++ +  N+       +        F R+++   +
Sbjct: 12  GVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 68

Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTY 279
              A     + +         LAI+ L  AL     +                  +   Y
Sbjct: 69  LAVAYFQRGMLY--YQTEKYDLAIKDLKEALIQLRGN------------------QLIDY 108

Query: 280 LQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP--GHSYSWDILRKLEQ 336
                    +  E  YN A +     + +++   +  +  +     HS     +  + +
Sbjct: 109 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK 167

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 13/132 (9%), Positives = 40/132 (30%), Gaps = 3/132 (2%)

Query: 202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQN 261
           Q    +     A+    +   A +  +   +     D   A + L  ++ +   +    +
Sbjct: 11  QLQQALELLIEAI--KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 262 NLA-VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDL 320
            L  +++A +   + A     A                 +S ++ D ++   +  +  +L
Sbjct: 69  QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

Query: 321 HPGHSYSWDILR 332
                +  +   
Sbjct: 129 RQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 3/138 (2%)

Query: 162 NHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNEN 221
           N     Q + AL      ++    +A L ++          ++       +  S+ L   
Sbjct: 5   NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQ--SIKLFPE 62

Query: 222 AADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGL-SQNNLAVLEAREGHIERASTYL 280
                  + H+       +   Q    A  +  +  L        L       E+ S   
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 281 QAAAASSPYLYETHYNQA 298
                          + +
Sbjct: 123 LQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 15/68 (22%), Positives = 29/68 (42%)

Query: 269 REGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSW 328
            EG +++A   L  A  +SP       +   +  + GD + +   + +S+ L P +    
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 329 DILRKLEQ 336
             LR L +
Sbjct: 68  SQLRHLVK 75

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 21/160 (13%), Positives = 43/160 (26%), Gaps = 2/160 (1%)

Query: 140 KYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY 199
           K Y+   +            G+          A+L +   +Q    + E +  L      
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLS 259
           ++Q  + ++   R L   L  +       ++      S  R A + L   L    ++   
Sbjct: 66  NEQELLAISALRRCLE--LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123

Query: 260 QNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAV 299
                      G            + S     +  +  AV
Sbjct: 124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 15/215 (6%)

Query: 123 LNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQM 182
             L           +++   +  L+       A+  + V+         A    R  L+ 
Sbjct: 57  QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 116

Query: 183 GLYNAELFNNLAL---------------CCFYSQQYDMVVTCFERALSLALNENAADVWY 227
               A L                            +  V   F  A+ L       DV  
Sbjct: 117 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176

Query: 228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASS 287
            +  +     +   A+ C   ALS+  +  L  N L    A     E A    + A    
Sbjct: 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236

Query: 288 PYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP 322
           P    + YN  +     G  +E+     ++L++  
Sbjct: 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 10/161 (6%)

Query: 110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQP 169
           +           +  L  +F        +V  +   L            +G      +Q 
Sbjct: 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 222

Query: 170 EVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSL---------ALNE 220
           E A+  YRR L++         NL + C     +   V  F  AL++             
Sbjct: 223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 282

Query: 221 NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-GLSQ 260
            + ++W  +      +  +          LS   +  GL Q
Sbjct: 283 MSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 323

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 144 LILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY 203
           + L   +   +    +GV    + + + A+  +   L +   +  L+N L        Q 
Sbjct: 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 222

Query: 204 DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNL 263
           +  V  + R  +L L        YN+    I +   R A++    AL++       +   
Sbjct: 223 EEAVAAYRR--ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280

Query: 264 AVL 266
             +
Sbjct: 281 GAM 283

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 2/133 (1%)

Query: 210 FERALSLALNENAADV--WYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE 267
           +++           D    +      +   D   A+     A+  D  H  +   L   +
Sbjct: 4   YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63

Query: 268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS 327
           A       A + L+      P         AV        +++  I++  L   P +++ 
Sbjct: 64  AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123

Query: 328 WDILRKLEQYFSY 340
                +       
Sbjct: 124 VTPAEEGAGGAGL 136

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 6/130 (4%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMG 183
             + +   L+  P S    +L        +E +     N F+ D  + +  FY R L   
Sbjct: 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGR 238

Query: 184 LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI 243
                            Q         +       N+        +      +   +  +
Sbjct: 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETL 296

Query: 244 QCLHLALSID 253
           Q      ++D
Sbjct: 297 QYFSTLKAVD 306

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 4/123 (3%)

Query: 154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERA 213
           +A+   G    + +          +  +   +    F NLA+C    ++Y   V C ++A
Sbjct: 33  QAVIQYGKIVSWLEMEYGLSEKESKASES--FLLAAFLNLAMCYLKLREYTKAVECCDKA 90

Query: 214 LSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHI 273
           L L  +       Y      + +++   A       L ++  +  ++  + + + +    
Sbjct: 91  LGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH 148

Query: 274 ERA 276
              
Sbjct: 149 NER 151

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 16/110 (14%), Positives = 41/110 (37%), Gaps = 2/110 (1%)

Query: 160 GVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALN 219
           G         + AL  Y   +++  +N  L++N      Y+++ D      +   ++ L 
Sbjct: 10  GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNR--SAAYAKKGDYQKAYEDGCKTVDLK 67

Query: 220 ENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR 269
            +    +   +     ++    A +     L  ++++   +  L  +EAR
Sbjct: 68  PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 24/220 (10%), Positives = 68/220 (30%), Gaps = 8/220 (3%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY-NDQPEVALLFYRRLLQM 182
               + +       + K  +  ++ +A          V            + +   +++ 
Sbjct: 48  YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 107

Query: 183 GLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA 242
              N +++++  +   + +     +      L+   +      W +   V          
Sbjct: 108 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNE 165

Query: 243 IQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN 302
           +Q +   L  D  +    N    + +        +   +    +   +    +N++  + 
Sbjct: 166 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY 225

Query: 303 LAG-----DLQESYNIVKKSLDLHPGHSYSWDILRKLEQY 337
           L G      L +  N++ + LDL P HS  + I   ++ Y
Sbjct: 226 LKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 5/98 (5%)

Query: 124 NLAKIFEGLNNMPMSVKYYKLILKRD---ATCMEAIACIGVNHFYNDQPEVALLFYRRLL 180
            +      + ++    K ++          +     A   V   YND     ++    LL
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 181 QMGLYN--AELFNNLALCCFYSQQYDMVVTCFERALSL 216
             G      +    LA+  +  ++Y+  +      L  
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 18/201 (8%), Positives = 43/201 (21%), Gaps = 58/201 (28%)

Query: 187 AELFNNLALCCFYSQQYDMVVTCFERALSLALN----ENAADVWYNISHVAIGISDTRLA 242
           A+L    A      ++ ++    F +A          + A + +           ++  A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 243 IQC-----------------------------------------------LHLALSIDSS 255
           +                                                  +      + 
Sbjct: 97  VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 256 HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA-------GDLQ 308
                   A L+A +G    AS        SS     + ++                D  
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216

Query: 309 ESYNIVKKSLDLHPGHSYSWD 329
            +   +++     P  + S +
Sbjct: 217 AAARTLQEGQSEDPNFADSRE 237

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.95
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.93
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.92
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.87
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.79
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.78
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.78
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.75
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.75
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.75
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.74
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.72
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.69
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.69
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.69
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.65
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.65
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.65
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.64
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.59
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.59
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.52
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.45
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.41
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.39
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.33
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.28
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.2
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.16
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.81
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.6
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.6
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.58
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.23
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.11
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.07
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.85
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	83.46

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=214.61  Aligned_cols=209  Identities=18%  Similarity=0.154  Sum_probs=192.3

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ...+..|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|.++++++|++...+..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            44678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccc-------------------------------------------------cchHHHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALN-------------------------------------------------ENAADVWYNIS  230 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~-------------------------------------------------~~~~~~~~~la  230 (341)
                      .|++++|+..+++++...|.                                                 .....++..+|
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  179 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            99999999988887765332                                                 22245678899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16588        231 HVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES  310 (341)
Q Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  310 (341)
                      .++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHH
Q psy16588        311 YNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       311 ~~~~~~al~~~p~~~~~~  328 (341)
                      +..|+++++++|++...+
T Consensus       260 ~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         260 VEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHhCCcChhhh
Confidence            999999999999886644

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-29  Score=217.33  Aligned_cols=225  Identities=21%  Similarity=0.280  Sum_probs=216.3

Q ss_pred             ccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHH
Q psy16588        110 LSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAEL  189 (341)
Q Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  189 (341)
                      ...|+.+   ..+..+|..+...|++++|...++++++.+|++..++..+|.++...|++++|+..|+++....|.....
T Consensus       163 ~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  239 (388)
T d1w3ba_         163 ETQPNFA---VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV  239 (388)
T ss_dssp             HHCTTCH---HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             ccCcchh---HHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH
Confidence            3455555   7788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      +..+|.++...|++++|+..|+++++++|++  ..++..+|.++...|++++|+..+++++...|.+...+..++.++..
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            9999999999999999999999999999999  99999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        270 EGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .|++++|+..|+++++++|++..+++++|.+|...|++++|+.+|+++++++|+++.++..++.+...++
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999999999998876654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.4e-27  Score=200.91  Aligned_cols=227  Identities=22%  Similarity=0.217  Sum_probs=170.6

Q ss_pred             hhcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-
Q psy16588        107 ASMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY-  185 (341)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-  185 (341)
                      ..+...|+++   .++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+..+....|. 
T Consensus        24 ~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          24 QLWRQEPDNT---GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF  100 (388)
T ss_dssp             HHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccc
Confidence            3455666666   667777777777777777777777777777777777777777777777777777777776554432 


Q ss_pred             -------------------------------------------------------------------cHHHHHHHHHHHH
Q psy16588        186 -------------------------------------------------------------------NAELFNNLALCCF  198 (341)
Q Consensus       186 -------------------------------------------------------------------~~~~~~~la~~~~  198 (341)
                                                                                         +..++..+|.++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (388)
T d1w3ba_         101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN  180 (388)
T ss_dssp             HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccc
Confidence                                                                               2334566677777


Q ss_pred             HcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERAST  278 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  278 (341)
                      ..|++++|...+++++..+|++  ..++..+|.++...|++++|+..|+++....+.....+..+|.++...|++++|+.
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  258 (388)
T d1w3ba_         181 AQGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID  258 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHhCccc--HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHH
Confidence            7777777777777777777777  77777788888888888888888888877777777777778888888888888888


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYF  338 (341)
Q Consensus       279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  338 (341)
                      .|+++++++|++..++..+|.++...|++++|+..|++++...|.+...+..++.+....
T Consensus       259 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence            888888888887778888888888888888888888888888888777777777665443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-26  Score=193.97  Aligned_cols=208  Identities=12%  Similarity=0.053  Sum_probs=194.6

Q ss_pred             CchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy16588        116 PFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYND-QPEVALLFYRRLLQMGLYNAELFNNLA  194 (341)
Q Consensus       116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la  194 (341)
                      |....++..+|.++.+.+.+++|+..++++++.+|++..+|+.+|.++...| ++++|+.+++++++.+|++..+|..+|
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            3344778888999999999999999999999999999999999999999887 599999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--
Q psy16588        195 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH--  272 (341)
Q Consensus       195 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--  272 (341)
                      .++...|++++|+..++++++++|.+  ..+|.++|.++...|++++|+..|+++++++|.+..+|+++|.++...+.  
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n--~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKN--YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcc--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence            99999999999999999999999999  99999999999999999999999999999999999999999999988876  


Q ss_pred             ----HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        273 ----IERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       273 ----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                          +++|+..+.++++++|++..+|..++.++...| .+++...+++++++.|++..
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~  254 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSS  254 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCC
T ss_pred             hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCC
Confidence                689999999999999999999999999876554 58899999999999887643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-25  Score=187.69  Aligned_cols=188  Identities=9%  Similarity=0.071  Sum_probs=178.5

Q ss_pred             HHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhhccccchHH
Q psy16588        146 LKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQ-QYDMVVTCFERALSLALNENAAD  224 (341)
Q Consensus       146 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~  224 (341)
                      +..+|+..+++..+|.++...+.+++|+.+++++++++|.+..+|+++|.++...| ++++|+..++++++.+|++  ..
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~--~~  113 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--YQ  113 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--HH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh--hh
Confidence            34467778899999999999999999999999999999999999999999999977 5999999999999999999  99


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16588        225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA  304 (341)
Q Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  304 (341)
                      +|..+|.++..+|++++|+..++++++++|.+..+|.++|.++...|++++|+..|+++++++|.+..+|.++|.++...
T Consensus       114 a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~  193 (315)
T d2h6fa1         114 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  193 (315)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        305 GD------LQESYNIVKKSLDLHPGHSYSWDILRKLE  335 (341)
Q Consensus       305 g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  335 (341)
                      +.      +++|+..+.+++.++|++..+|..++.+.
T Consensus       194 ~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll  230 (315)
T d2h6fa1         194 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL  230 (315)
T ss_dssp             TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            76      68999999999999999999998887664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-24  Score=182.95  Aligned_cols=200  Identities=15%  Similarity=0.127  Sum_probs=177.1

Q ss_pred             hcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--
Q psy16588        108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY--  185 (341)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--  185 (341)
                      ++..+|.++   .++..+|.++...|++++|+..|.++++.+|++...+..+|.+|...|++++|++.+++++...|.  
T Consensus        45 al~~~P~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          45 AVQQDPKHM---EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHHSCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             HHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchH
Confidence            455667766   889999999999999999999999999999999999999999999999999999998887765443  


Q ss_pred             -------------------------------------------------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q psy16588        186 -------------------------------------------------NAELFNNLALCCFYSQQYDMVVTCFERALSL  216 (341)
Q Consensus       186 -------------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  216 (341)
                                                                       ++.++..+|.++...|++++|+.+|++++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  201 (323)
T d1fcha_         122 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV  201 (323)
T ss_dssp             GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc
Confidence                                                             2345778899999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh----
Q psy16588        217 ALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE----  292 (341)
Q Consensus       217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----  292 (341)
                      +|++  ..+|+.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|+++++++|++..    
T Consensus       202 ~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  279 (323)
T d1fcha_         202 RPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE  279 (323)
T ss_dssp             CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             cccc--ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence            9999  9999999999999999999999999999999999999999999999999999999999999999888765    


Q ss_pred             -------HHHHHHHHHHHcCCHHHHHH
Q psy16588        293 -------THYNQAVISNLAGDLQESYN  312 (341)
Q Consensus       293 -------~~~~l~~~~~~~g~~~~A~~  312 (341)
                             +|..++.++...++.+.+..
T Consensus       280 ~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         280 GGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                   44556777777776654433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.9e-24  Score=173.46  Aligned_cols=204  Identities=10%  Similarity=0.022  Sum_probs=173.2

Q ss_pred             hhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy16588        118 IQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCC  197 (341)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  197 (341)
                      ....++.+|.+|...|++++|+..|++++..+|+++.+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence            34778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHhCCH
Q psy16588        198 FYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE----AREGHI  273 (341)
Q Consensus       198 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----~~~g~~  273 (341)
                      ...|++++|+..|+++++.+|.+  ......++.++...+..+.+...........+.....  .+...+    ...+.+
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPND--PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLM  191 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHHH
Confidence            99999999999999999999998  8888888888888877766666666665555544321  111111    223345


Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        274 ERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       274 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  325 (341)
                      +.+...+.......|....+++++|.+|...|++++|+.+|++++..+|++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            6666666666777777788999999999999999999999999999999874

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=3.9e-22  Score=169.25  Aligned_cols=226  Identities=9%  Similarity=-0.068  Sum_probs=191.1

Q ss_pred             hhhhhcccCCCCCchhHhhhcHHHH----------HHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--hHH
Q psy16588        104 LGTASMLSQPDGPFIQVSRLNLAKI----------FEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQ--PEV  171 (341)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--~~~  171 (341)
                      .-...+..+|++.   .+|...+.+          +...|++++|+.+++++++.+|++..+|+.+|.++...++  +++
T Consensus        51 ~~~~~l~~~P~~~---~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~  127 (334)
T d1dcea1          51 LTSQILGANPDFA---TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR  127 (334)
T ss_dssp             HHHHHHHHCTTCH---HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHCCCcH---HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHH
Confidence            3344566788876   555444433          3445568899999999999999999999999998887764  899


Q ss_pred             HHHHHHHHHHcCCCcHHHH-HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHH---------
Q psy16588        172 ALLFYRRLLQMGLYNAELF-NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRL---------  241 (341)
Q Consensus       172 A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~---------  241 (341)
                      |+..+++++..+|.+..++ ...|.++...+++++|+..+++++..+|.+  ..+|+++|.++...|++++         
T Consensus       128 a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~--~~a~~~l~~~~~~~~~~~~A~~~~~~~~  205 (334)
T d1dcea1         128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--HHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             HHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence            9999999999999988876 567789989999999999999999999999  9999999999999887654         


Q ss_pred             ---------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy16588        242 ---------------------AIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVI  300 (341)
Q Consensus       242 ---------------------A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  300 (341)
                                           +...+.+++...|.....+..++.++...|++++|+..+.+++..+|.+..++..+|.+
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  285 (334)
T d1dcea1         206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA  285 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence                                 34444555555666666666788899999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        301 SNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       301 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      +...|++++|+.+|+++++++|++...|..++..
T Consensus       286 ~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         286 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence            9999999999999999999999998888776544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.9e-20  Score=150.79  Aligned_cols=203  Identities=14%  Similarity=-0.000  Sum_probs=165.2

Q ss_pred             CCchHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHH
Q psy16588        133 NNMPMSVKYYKLILKRDA----TCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVT  208 (341)
Q Consensus       133 g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  208 (341)
                      .+.+.++..+++++...+    ....+++.+|.+|...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            345677777888876533    3567899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy16588        209 CFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSP  288 (341)
Q Consensus       209 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  288 (341)
                      .|+++++++|.+  ..+++++|.++..+|++++|+..|+++++.+|.+......++..+...+..+.+...........+
T Consensus        93 ~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T d1xnfa_          93 AFDSVLELDPTY--NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK  170 (259)
T ss_dssp             HHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             hhhHHHHHHhhh--hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence            999999999999  999999999999999999999999999999999999988889888888887777666666666555


Q ss_pred             CchhHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        289 YLYETHYNQAVIS----NLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       289 ~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .... + .+...+    ...+.++.+...+.......|+...+++.++.+....+
T Consensus       171 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g  223 (259)
T d1xnfa_         171 EQWG-W-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG  223 (259)
T ss_dssp             CSTH-H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhh-h-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCC
Confidence            4432 1 122222    12334556666666666777777788888887765543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.6e-19  Score=124.34  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISN  302 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  302 (341)
                      ..-+...|..++..|++++|+..|+++++.+|.++.+|.++|.++..+|++++|+..|+++++++|+++.+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            34466789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       303 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                      .+|++++|+..|+++++++|+++.++..+..++.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999988888764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=3.1e-19  Score=151.11  Aligned_cols=206  Identities=9%  Similarity=-0.062  Sum_probs=178.2

Q ss_pred             HcCC-chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        131 GLNN-MPMSVKYYKLILKRDATCMEAIACIGVNHFYN----------DQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       131 ~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..++ .++|+.++++++..+|++..+|...+.++...          |++++|+.+++++++.+|++..+|+.+|.++..
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence            3444 58999999999999999999998877776544          347899999999999999999999999999988


Q ss_pred             cCC--hhHHHHHHHHHHhhccccchHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH-
Q psy16588        200 SQQ--YDMVVTCFERALSLALNENAADVW-YNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER-  275 (341)
Q Consensus       200 ~~~--~~~A~~~~~~al~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-  275 (341)
                      .++  +++|+..+++++..+|..  ...+ ...|.++...+.+++|+..++++++.+|.+..+|+++|.++...|++++ 
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             hccccHHHHHHHHHHHHhhCchh--hhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            775  889999999999999998  7776 5678999999999999999999999999999999999999999887654 


Q ss_pred             -----------------------------HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q psy16588        276 -----------------------------ASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSY  326 (341)
Q Consensus       276 -----------------------------A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  326 (341)
                                                   +...+.+++...|.+...+..++.++...|++.+|+..+.+++..+|++..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  277 (334)
T d1dcea1         198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL  277 (334)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHH
Confidence                                         444455566666766777778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy16588        327 SWDILRKLEQYF  338 (341)
Q Consensus       327 ~~~~l~~~~~~~  338 (341)
                      ++..++.+....
T Consensus       278 ~~~~l~~~~~~~  289 (334)
T d1dcea1         278 TIILLMRALDPL  289 (334)
T ss_dssp             HHHHHHHHHCTG
T ss_pred             HHHHHHHHHHHC
Confidence            998888776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.5e-18  Score=142.46  Aligned_cols=216  Identities=10%  Similarity=-0.006  Sum_probs=170.2

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc------H
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRD------ATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN------A  187 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~  187 (341)
                      ..+...|.+|...|++++|++.|.++++..      +.....+..+|.+|...|++++|+.+|++++.+.+..      .
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            567788999999999999999999999863      2234678999999999999999999999999875543      5


Q ss_pred             HHHHHHHHHHHH-cCChhHHHHHHHHHHhhcccc----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-----
Q psy16588        188 ELFNNLALCCFY-SQQYDMVVTCFERALSLALNE----NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHG-----  257 (341)
Q Consensus       188 ~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----  257 (341)
                      .++..+|.++.. .|++++|+.+|++++++.+..    ....++.++|.++..+|+|++|+..|++++...+...     
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~  197 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence            678899988865 699999999999999885443    2356789999999999999999999999999876653     


Q ss_pred             --HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh-----HHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHH
Q psy16588        258 --LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE-----THYNQAVISNL--AGDLQESYNIVKKSLDLHPGHSYSW  328 (341)
Q Consensus       258 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~  328 (341)
                        ..+...+.++...|+++.|...++++++++|....     ....+..++..  .+.+++|+..|+++.+++|..   .
T Consensus       198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~---~  274 (290)
T d1qqea_         198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK---I  274 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH---H
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHH---H
Confidence              45678899999999999999999999999886544     33445555544  356899999998887776533   3


Q ss_pred             HHHHHHHHHh
Q psy16588        329 DILRKLEQYF  338 (341)
Q Consensus       329 ~~l~~~~~~~  338 (341)
                      ..+.+++..+
T Consensus       275 ~~L~~~k~~l  284 (290)
T d1qqea_         275 TILNKIKESI  284 (290)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            3455555444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.7e-17  Score=128.34  Aligned_cols=128  Identities=16%  Similarity=0.060  Sum_probs=70.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC
Q psy16588        158 CIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS  237 (341)
Q Consensus       158 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g  237 (341)
                      +.|..+...|++++|++.|.+   ..+.++.+|+++|.+|..+|++++|+.+|+++++++|+.  +.+|+++|.++..+|
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~--~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh--hhhHHHHHHHHHhhc
Confidence            345555555555555555543   233344555555555555555555555555555555555  555555555555555


Q ss_pred             CHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q psy16588        238 DTRLAIQCLHLALSIDSSH----------------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYL  290 (341)
Q Consensus       238 ~~~~A~~~~~~al~~~p~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  290 (341)
                      ++++|+..|++++...+.+                ..+++++|.++...|++++|++.+++++.+.|+.
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            5555555555555433221                3455666666666666666666666666666553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.2e-18  Score=120.24  Aligned_cols=105  Identities=11%  Similarity=0.029  Sum_probs=47.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q psy16588        193 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGH  272 (341)
Q Consensus       193 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  272 (341)
                      .|..++..|++++|+.+|+++++.+|.+  +.+|.++|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcc--hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            3444444444444444444444444444  44444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy16588        273 IERASTYLQAAAASSPYLYETHYNQAV  299 (341)
Q Consensus       273 ~~~A~~~~~~al~~~p~~~~~~~~l~~  299 (341)
                      +++|+..|+++++++|+++.++..++.
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            444444444444444444444444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-17  Score=129.07  Aligned_cols=131  Identities=11%  Similarity=0.073  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        190 FNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR  269 (341)
Q Consensus       190 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  269 (341)
                      +++.|..+...|+|++|++.|+++   .+.+  +.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPH--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            346688999999999999999864   5556  88999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCc----------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q psy16588        270 EGHIERASTYLQAAAASSPYL----------------YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS  325 (341)
Q Consensus       270 ~g~~~~A~~~~~~al~~~p~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  325 (341)
                      +|++++|+..|++++...+.+                ..+++++|.++..+|++++|+..+++++.+.|+..
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999875543                25788999999999999999999999999988753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1e-17  Score=125.82  Aligned_cols=125  Identities=14%  Similarity=0.069  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVL  266 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  266 (341)
                      +..+...|..++..|+|++|+.+|+++++++|++  ..+|+++|.++...|++++|+..|+++++++|++..+|..+|.+
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh--hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            3456778888999999999999999999999988  89999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH--HcCCHHHHHHH
Q psy16588        267 EAREGHIERASTYLQAAAASSPYLYETHYNQAVISN--LAGDLQESYNI  313 (341)
Q Consensus       267 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~  313 (341)
                      +..+|++++|+..|++++.++|++..++..++.+..  ..+.+++|+..
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999988888877776643  33445555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.8e-20  Score=162.49  Aligned_cols=218  Identities=12%  Similarity=0.007  Sum_probs=150.3

Q ss_pred             hcccCCCCCchhHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--C
Q psy16588        108 SMLSQPDGPFIQVSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGL--Y  185 (341)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~  185 (341)
                      ++...|+..   .+++++|.++...|++++|   |++++..+|+....+...+.+.  ...+..+++.+++..+...  +
T Consensus        12 A~~l~p~~a---~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~   83 (497)
T d1ya0a1          12 AEVLKADMT---DSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRANPN   83 (497)
T ss_dssp             HHHHHGGGT---CSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSSCTT
T ss_pred             HHHcCCCCH---HHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcccccCcc
Confidence            444556666   7789999999999999876   8899998887665543333222  2235677888888776542  2


Q ss_pred             cH-HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        186 NA-ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLA  264 (341)
Q Consensus       186 ~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  264 (341)
                      .. .....++.++...+.|+.++..+.+++.++|.+  ...+.++|.++...|++++|+..+++++..++  ..++.++|
T Consensus        84 ~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG  159 (497)
T d1ya0a1          84 RSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC--RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLG  159 (497)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh--HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHH
Confidence            22 223345666677888999999999999999998  99999999999999999999999999998776  46888999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        265 VLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      .++...|++++|+.+|+++++++|++..+|++||.++...|++.+|+.+|.+++...|.++.++..+..+...
T Consensus       160 ~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998876543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-17  Score=124.40  Aligned_cols=125  Identities=16%  Similarity=0.216  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      ++.+...|..++..|+|++|+.+|+++++++|+++.+|.++|.++...|++++|+..|+++++++|.+  ..+|..+|.+
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~--~~a~~~~g~~   87 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc--hHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999998  8999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HhCCHHHHHHH
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEA--REGHIERASTY  279 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~  279 (341)
                      +..+|++++|+..|++++.++|++..++..++.+..  ..+.+++|+..
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999888887776643  33445555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.8e-16  Score=132.31  Aligned_cols=219  Identities=11%  Similarity=0.013  Sum_probs=172.1

Q ss_pred             hhhhhcccCCCCCchhHhhhcHHHHHHHcC--------------CchHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Q psy16588        104 LGTASMLSQPDGPFIQVSRLNLAKIFEGLN--------------NMPMSVKYYKLILKR-DATCMEAIACIGVNHFYNDQ  168 (341)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~  168 (341)
                      +-..++...|.++   ..|+..+..+...+              ..+++..+|+++++. .|.+...|..++.++...|+
T Consensus        38 vyerAl~~~~~~~---~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~  114 (308)
T d2onda1          38 AYEQCLLVLGHHP---DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCH---HHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence            3345666677777   55666665554332              346778888888864 67778888888888888888


Q ss_pred             hHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHH-hcCCHHHHHHHH
Q psy16588        169 PEVALLFYRRLLQMGLYNA-ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAI-GISDTRLAIQCL  246 (341)
Q Consensus       169 ~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~  246 (341)
                      +++|...|++++...|.+. .+|..++......|+++.|..+|+++++..|.+  ...+...+.... ..|+.+.|...|
T Consensus       115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~--~~~~~~~a~~e~~~~~~~~~a~~i~  192 (308)
T d2onda1         115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhccCHHHHHHHH
Confidence            8888888888888888664 467888888888888888888888888888888  777877777644 467888888888


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        247 HLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY----ETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       247 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      +++++.+|+++..|..++..+...|+++.|...|++++...|.++    ..|..........|+.+.+..+++++.++.|
T Consensus       193 e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            888888888888888888888888888888888888888776543    3677777777788888888888888888888


Q ss_pred             CCHHH
Q psy16588        323 GHSYS  327 (341)
Q Consensus       323 ~~~~~  327 (341)
                      +....
T Consensus       273 ~~~~~  277 (308)
T d2onda1         273 EEYEG  277 (308)
T ss_dssp             TTTSS
T ss_pred             ccccc
Confidence            77553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.4e-17  Score=138.71  Aligned_cols=216  Identities=12%  Similarity=0.008  Sum_probs=146.3

Q ss_pred             hhcccCCCCCch--hHhhhcHHHHHHHcCCchHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy16588        107 ASMLSQPDGPFI--QVSRLNLAKIFEGLNNMPMSVKYYKLILKRDAT------CMEAIACIGVNHFYNDQPEVALLFYRR  178 (341)
Q Consensus       107 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (341)
                      .++...|.++..  ..++..+|.++...|++++|+..|++++...+.      ....+..++.++...|++..+...+.+
T Consensus        37 ~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  116 (366)
T d1hz4a_          37 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK  116 (366)
T ss_dssp             HHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445544321  134555666777777777777777766654322      123455666666677777777777766


Q ss_pred             HHHcCC--------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc------------------------------
Q psy16588        179 LLQMGL--------YNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE------------------------------  220 (341)
Q Consensus       179 al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------------------------  220 (341)
                      ++...+        .....+..+|.++...|+++.+...+.+++...+..                              
T Consensus       117 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  196 (366)
T d1hz4a_         117 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN  196 (366)
T ss_dssp             HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            665321        123355667777777788777777777766542211                              


Q ss_pred             --------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16588        221 --------------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH----GLSQNNLAVLEAREGHIERASTYLQA  282 (341)
Q Consensus       221 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~  282 (341)
                                    ....++..++.++...|++++|...+++++...+.+    ...+.++|.++...|++++|+..+++
T Consensus       197 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  276 (366)
T d1hz4a_         197 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE  276 (366)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                          012344556777777788888888888888776544    45677889999999999999999999


Q ss_pred             HHHh------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        283 AAAS------SPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       283 al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      ++..      .|....++..+|.+|..+|++++|+..+++++++.+
T Consensus       277 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         277 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            8854      244456888999999999999999999999998754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=6.1e-17  Score=133.96  Aligned_cols=172  Identities=14%  Similarity=0.068  Sum_probs=141.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHHH
Q psy16588        156 IACIGVNHFYNDQPEVALLFYRRLLQMG------LYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAADV  225 (341)
Q Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~  225 (341)
                      +...|.+|...|++++|+++|.+++.+.      +.....+.++|.+|...|++++|+.+|++++.+.+..    ....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            3445889999999999999999999863      2335689999999999999999999999999986655    23567


Q ss_pred             HHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-------
Q psy16588        226 WYNISHVAIG-ISDTRLAIQCLHLALSIDSS------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-------  291 (341)
Q Consensus       226 ~~~la~~~~~-~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------  291 (341)
                      +..+|.++.. .|++++|+.+|++++++.+.      ...++.++|.++..+|+|++|+..|++++...+.+.       
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            8889988865 69999999999999987432      245789999999999999999999999999887654       


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16588        292 ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS  327 (341)
Q Consensus       292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  327 (341)
                      ..+...+.++...|++..|...++++++++|.....
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence            256788999999999999999999999999877654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=3.8e-16  Score=130.29  Aligned_cols=203  Identities=11%  Similarity=-0.032  Sum_probs=177.3

Q ss_pred             chHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHH
Q psy16588        135 MPMSVKYYKLILKRDATCMEAIACIGVNHFYN--------------DQPEVALLFYRRLLQM-GLYNAELFNNLALCCFY  199 (341)
Q Consensus       135 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~  199 (341)
                      .+.+...|++++...|.++..|+..+..+...              +..++|...|++++.. .|.+...|..++.++..
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            36778899999999999999999887765432              3458899999999974 78899999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCCHHHHHH
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR-EGHIERAST  278 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~  278 (341)
                      .|+++.|...|++++...|.+ ...+|..++......|+++.|...|+++++..|.+...+...+..... .|+.+.|..
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~-~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~  190 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSC-THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence            999999999999999998876 145789999999999999999999999999999999999998887654 589999999


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHh
Q psy16588        279 YLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHS----YSWDILRKLEQYF  338 (341)
Q Consensus       279 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~  338 (341)
                      .|++++...|+++..|..++..+...|+++.|..+|++++...|.++    ..|.....+...+
T Consensus       191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~  254 (308)
T d2onda1         191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  254 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999877553    3666666665544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.1e-17  Score=129.04  Aligned_cols=121  Identities=19%  Similarity=0.185  Sum_probs=101.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISH  231 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~  231 (341)
                      .+..+...|..++..|++++|+..|++++.++|.++.+|.++|.+|...|++++|+..|+++++++|++  ..+|+++|.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~--~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc--HHHHHHHHH
Confidence            466778889999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH
Q psy16588        232 VAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIE  274 (341)
Q Consensus       232 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  274 (341)
                      +|..+|++++|+..|+++++++|++...+...+..+...++..
T Consensus        81 ~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~  123 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  123 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988765544444444444433333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=7.5e-17  Score=125.85  Aligned_cols=114  Identities=18%  Similarity=0.130  Sum_probs=101.2

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ......|..++..|+|++|+..|++++..+|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+++|.+|..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIG  235 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~  235 (341)
                      +|++++|+..|++++.+.|..  ...+...+..+..
T Consensus        85 l~~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~l~  118 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLAKEQ--RLNFGDDIPSALR  118 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT--TCCCCSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHH
Confidence            999999999999999999876  3333333444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.4e-16  Score=117.33  Aligned_cols=124  Identities=14%  Similarity=0.097  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy16588        187 AELFNNLALCCFYSQQYDMVVTCFERALSLALNE-------------NAADVWYNISHVAIGISDTRLAIQCLHLALSID  253 (341)
Q Consensus       187 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  253 (341)
                      +..+...|..++..|+|++|+..|++++...|..             ....++.++|.+|.++|++++|+..++++++++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            4567788999999999999999999999886643             113456778888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16588        254 SSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES  310 (341)
Q Consensus       254 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  310 (341)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+....++..+.
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888887776665544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.1e-17  Score=114.23  Aligned_cols=112  Identities=12%  Similarity=0.089  Sum_probs=82.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHH
Q psy16588        228 NISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE---GHIERASTYLQAAAASSPYL--YETHYNQAVISN  302 (341)
Q Consensus       228 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~  302 (341)
                      +++..+...+++++|.+.|++++.++|.++.+++++|.++...   +++++|+..|++++..+|.+  ..+++++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4556666777777788888888887777777778887777653   34456777888877776644  347778888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        303 LAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       303 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      ..|++++|+.+|+++++++|++..+...+..+.+.+.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            8888888888888888888888887777777766553

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.69  E-value=9.3e-16  Score=113.89  Aligned_cols=82  Identities=15%  Similarity=0.060  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      .++.++|.+|.++|++++|+..++++++++|.+..+|+++|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999998888888776


Q ss_pred             hh
Q psy16588        338 FS  339 (341)
Q Consensus       338 ~~  339 (341)
                      ++
T Consensus       148 l~  149 (153)
T d2fbna1         148 LK  149 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.2e-16  Score=116.04  Aligned_cols=122  Identities=20%  Similarity=0.239  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN---------------AELFNNLALCCFYSQQYDMVVTCFERALSLA  217 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  217 (341)
                      +..+...|..++..|++++|+..|++++...|..               ..++.++|.+|+..|++++|+.++++++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            4455667777777777777777777777776542               2345667777777777777777777777777


Q ss_pred             cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16588        218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      |.+  +.+++.+|.++..+|++++|+..|+++++++|++..+...++.+....++..+.
T Consensus        93 p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          93 SNN--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc--hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            777  777777777777777777777777777777777777777777776665555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.67  E-value=5.1e-16  Score=108.78  Aligned_cols=94  Identities=12%  Similarity=0.009  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16588        225 VWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLA  304 (341)
Q Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  304 (341)
                      .++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..+|..+|.+|..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            45667777777788888888888888777777777788888887788888888888888888887777778888888888


Q ss_pred             CCHHHHHHHHHHHH
Q psy16588        305 GDLQESYNIVKKSL  318 (341)
Q Consensus       305 g~~~~A~~~~~~al  318 (341)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            88888877777764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=2.1e-15  Score=114.09  Aligned_cols=138  Identities=17%  Similarity=0.072  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      ...+...|..++..|++++|+..|.+++...+.                  ..+.....+...+.|..  ..++.++|.+
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~nla~~   86 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDADGAKLQPVA--LSCVLNIGAC   86 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HHHHSCHHHHGGGHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh------------------hhhhhhhHHHHHhChhh--HHHHHHHHHH
Confidence            344567788888888888888888887753221                  11111223334556666  7788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQES  310 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  310 (341)
                      +..+|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+........++
T Consensus        87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888877666555444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2e-15  Score=108.50  Aligned_cols=116  Identities=14%  Similarity=0.030  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh-------HHH
Q psy16588        223 ADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE-------THY  295 (341)
Q Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~  295 (341)
                      +..+.++|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|+|++|+..++++++++|.+..       ++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4556678888888888888888888888888888888888888888888888888888888887776654       556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        296 NQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       296 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .+|.++...+++++|+.+|++++..+++ ++....+..+.+.++
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            6777888888999999999999888765 555666666655543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.5e-16  Score=110.89  Aligned_cols=107  Identities=15%  Similarity=0.057  Sum_probs=49.1

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q psy16588        193 LALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGIS---DTRLAIQCLHLALSIDSSH--GLSQNNLAVLE  267 (341)
Q Consensus       193 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~  267 (341)
                      ++..+...+++++|.+.|++++.++|.+  +.+++++|.++...+   ++++|+..|++++..+|..  ..+++++|.+|
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~--~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            3334444444444444444444444444  444444444444322   2233444444444444332  22444445555


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYETHYNQAVIS  301 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  301 (341)
                      ...|++++|+.+|+++++++|++..+...++.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            5555555555555555555554444444444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.65  E-value=4.5e-15  Score=112.04  Aligned_cols=133  Identities=14%  Similarity=0.141  Sum_probs=101.8

Q ss_pred             cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy16588        186 NAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-------------NAADVWYNISHVAIGISDTRLAIQCLHLALSI  252 (341)
Q Consensus       186 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (341)
                      ....+...|..++..|+|.+|+..|++++...+..             ....++.++|.||..+|++++|+..+++++++
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            35667788999999999999999999998875443             12345677888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q psy16588        253 DSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQE-SYNIVKKSL  318 (341)
Q Consensus       253 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al  318 (341)
                      +|.+..+++.+|.++..+|++++|+..|++++.++|++..++..++.+....+.+.+ ..+.|.+.+
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888877766665543 344444444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.65  E-value=2.8e-15  Score=111.28  Aligned_cols=133  Identities=20%  Similarity=0.137  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      +..+...|..++..|+|.+|+..|++++...+....             ..+.........     ..  ..++.++|.+
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-------------~~~~~~~~~~~~-----~~--~~~~~Nla~~   76 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-------------WDDQILLDKKKN-----IE--ISCNLNLATC   76 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-------------CCCHHHHHHHHH-----HH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh-------------hhhHHHHHhhhh-----HH--HHHHhhHHHH
Confidence            344556777777777777777777777765543211             001111111111     11  4578899999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAG  305 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  305 (341)
                      |..+|++++|+..++++++++|.+..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+..+.+
T Consensus        77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988888776553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.1e-17  Score=144.42  Aligned_cols=167  Identities=13%  Similarity=-0.024  Sum_probs=116.0

Q ss_pred             chHHHHHHHHHHHhCC--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q psy16588        135 MPMSVKYYKLILKRDA--TCM-EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFE  211 (341)
Q Consensus       135 ~~~A~~~~~~~l~~~~--~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  211 (341)
                      |..+++.+++..+...  +.. .....++.++...+.|+.++..+++++..+|.+...+.++|..+...|++++|+..++
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  144 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS  144 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CC
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence            5567777777775432  222 2233456667778889999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch
Q psy16588        212 RALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY  291 (341)
Q Consensus       212 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  291 (341)
                      +++..++    ..++.++|.++...|++++|+.+|+++++++|+++..++++|.++...|++.+|+.+|.+++...|..+
T Consensus       145 ~al~~~~----~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~  220 (497)
T d1ya0a1         145 SSCSYIC----QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP  220 (497)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred             HHhCCCH----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Confidence            9988765    458889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHcC
Q psy16588        292 ETHYNQAVISNLAG  305 (341)
Q Consensus       292 ~~~~~l~~~~~~~g  305 (341)
                      .++.+|+.++.+..
T Consensus       221 ~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         221 AASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=2.8e-15  Score=113.34  Aligned_cols=132  Identities=15%  Similarity=0.099  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16588        188 ELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLE  267 (341)
Q Consensus       188 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  267 (341)
                      ..+...|..++..|+|.+|+..|++++...+..  .                  +.....+...+.|....++.++|.++
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~~nla~~~   87 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS--R------------------AAAEDADGAKLQPVALSCVLNIGACK   87 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--H------------------HHSCHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--h------------------hhhhhHHHHHhChhhHHHHHHHHHHH
Confidence            345667778888888888888888887664332  1                  11111233345566788999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy16588        268 AREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQYFS  339 (341)
Q Consensus       268 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  339 (341)
                      .++|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..+...+..+...+.
T Consensus        88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1          88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999888876654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.64  E-value=7e-15  Score=110.93  Aligned_cols=131  Identities=14%  Similarity=0.188  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLY---------------NAELFNNLALCCFYSQQYDMVVTCFERALSLA  217 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  217 (341)
                      +..+...|..++..|++++|+..|++++...+.               ...++.++|.||..+|++++|+..+++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            567888999999999999999999999875332               23457789999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHH
Q psy16588        218 LNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIER-ASTYLQAAAA  285 (341)
Q Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~  285 (341)
                      |.+  ..+++.+|.++..+|++++|+..|++++.++|++..++..++.+....+.+.+ ....|.+.++
T Consensus        95 p~~--~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1          95 SAN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            999  99999999999999999999999999999999999999999998877766543 4444444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.64  E-value=1.6e-15  Score=106.18  Aligned_cols=92  Identities=18%  Similarity=0.149  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16588        191 NNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEARE  270 (341)
Q Consensus       191 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  270 (341)
                      +.+|.++...|++++|+..|++++..+|++  +.+|..+|.++...|++++|+..|+++++++|++..++..+|.+|...
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccccccc--chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            445555555555555555555555555555  555555565555555666666666666655555555556666666666


Q ss_pred             CCHHHHHHHHHHHH
Q psy16588        271 GHIERASTYLQAAA  284 (341)
Q Consensus       271 g~~~~A~~~~~~al  284 (341)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            66666655555543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=2.9e-15  Score=109.90  Aligned_cols=115  Identities=11%  Similarity=-0.031  Sum_probs=61.1

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHH
Q psy16588        164 FYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAI  243 (341)
Q Consensus       164 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~  243 (341)
                      .+.+.+++|+..|+++++.+|+++.+++++|.++...+++..+.+                          ..+.+++|+
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~~Ai   61 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQEAI   61 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHHHHH
Confidence            344455555555555555555555555555555554333221111                          112234455


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy16588        244 QCLHLALSIDSSHGLSQNNLAVLEAREG-----------HIERASTYLQAAAASSPYLYETHYNQAVISNLA  304 (341)
Q Consensus       244 ~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  304 (341)
                      ..|+++++++|+++.+|+++|.+|..+|           .+++|+.+|+++++++|++..++..|+.+....
T Consensus        62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            5555555555555555555555554443           356666667777777776666666666665333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.59  E-value=6.5e-13  Score=107.78  Aligned_cols=205  Identities=15%  Similarity=0.101  Sum_probs=155.0

Q ss_pred             HhhhcHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy16588        120 VSRLNLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFY----NDQPEVALLFYRRLLQMGLYNAELFNNLAL  195 (341)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~  195 (341)
                      .+++++|..+...+++.+|+++|+++.+.  .+..+++.||.+|..    ..++..|..+++.+....  ++.+...+|.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~   78 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcccc
Confidence            67899999999999999999999999875  589999999999997    678999999999987654  6677777877


Q ss_pred             HHHH----cCChhHHHHHHHHHHhhcccc--------------------------------chHHHHHHHHHHHHh----
Q psy16588        196 CCFY----SQQYDMVVTCFERALSLALNE--------------------------------NAADVWYNISHVAIG----  235 (341)
Q Consensus       196 ~~~~----~~~~~~A~~~~~~al~~~~~~--------------------------------~~~~~~~~la~~~~~----  235 (341)
                      ++..    ..+.+.|...++++....+..                                .....++.+|.++..    
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  158 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGT  158 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCc
Confidence            7765    456778888888776542111                                014455666666664    


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCH
Q psy16588        236 ISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDL  307 (341)
Q Consensus       236 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~  307 (341)
                      ..+...+..+++.+.+  ..++.+++++|.+|..    ..++++|+.+|+++.+.  .++.++++||.+|..    ..++
T Consensus       159 ~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~  234 (265)
T d1ouva_         159 PKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNE  234 (265)
T ss_dssp             CCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCS
T ss_pred             ccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCH
Confidence            3556667777777664  4567888889988877    66899999999998876  467788899998875    3478


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16588        308 QESYNIVKKSLDLHPGHSYSWDILRKL  334 (341)
Q Consensus       308 ~~A~~~~~~al~~~p~~~~~~~~l~~~  334 (341)
                      ++|..+|+++......  .+...+..+
T Consensus       235 ~~A~~~~~kAa~~g~~--~A~~~l~~l  259 (265)
T d1ouva_         235 KQAIENFKKGCKLGAK--GACDILKQL  259 (265)
T ss_dssp             TTHHHHHHHHHHHTCH--HHHHHHHTC
T ss_pred             HHHHHHHHHHHHCcCH--HHHHHHHHH
Confidence            8899999999877643  344444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=4.1e-15  Score=109.10  Aligned_cols=104  Identities=11%  Similarity=-0.036  Sum_probs=83.2

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy16588        234 IGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----------EGHIERASTYLQAAAASSPYLYETHYNQAVISNL  303 (341)
Q Consensus       234 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  303 (341)
                      .+++.|++|+..|+++++++|+++.+++++|.++..          .+.+++|+..|+++++++|++..+|+++|.+|..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            344556666666666666666666666666666653          3456899999999999999999999999999988


Q ss_pred             cCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16588        304 AGD-----------LQESYNIVKKSLDLHPGHSYSWDILRKLEQY  337 (341)
Q Consensus       304 ~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  337 (341)
                      +|+           +++|..+|+++++++|++..++..++...+.
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            764           6899999999999999999999888877543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.4e-14  Score=101.88  Aligned_cols=100  Identities=16%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc-----chHHHHHHH
Q psy16588        155 AIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNE-----NAADVWYNI  229 (341)
Q Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~l  229 (341)
                      .+..+|..++..|+|++|+.+|.+++.++|++..++.++|.+|...|+|++|+..|+++++++|.+     ....++..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            344666677777777777777777777777777777777777777777777777777777666655     112344455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCC
Q psy16588        230 SHVAIGISDTRLAIQCLHLALSIDS  254 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~~~p  254 (341)
                      |.++...+++++|+.+|++++..++
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            5555555555555555555555544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=7.5e-13  Score=111.43  Aligned_cols=167  Identities=12%  Similarity=-0.019  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcccc----chHH
Q psy16588        154 EAIACIGVNHFYNDQPEVALLFYRRLLQMGLYN-----AELFNNLALCCFYSQQYDMVVTCFERALSLALNE----NAAD  224 (341)
Q Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~  224 (341)
                      +.....|.++...|++++|+.+|++++...|.+     ..++..+|.++...|++++|+..|++++...+..    ....
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            334444555555555555555555555554443     2244445555555555555555555555443322    1133


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCch-----
Q psy16588        225 VWYNISHVAIGISDTRLAIQCLHLALSIDS--------SHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLY-----  291 (341)
Q Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----  291 (341)
                      .+..++.++...|++..|...+.+++...+        .....+..+|.++...|+++.+...+.+++...+...     
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            444555555555555555555555544321        1122344455555555555555555555555433221     


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy16588        292 ETHYNQAVISNLAGDLQESYNIVKKSLDL  320 (341)
Q Consensus       292 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  320 (341)
                      .++..++.++...+++.++...+.++...
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  201 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENL  201 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            23444455555555555555555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.6e-13  Score=89.85  Aligned_cols=82  Identities=17%  Similarity=0.144  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy16588        258 LSQNNLAVLEAREGHIERASTYLQAAAASSPYL-------YETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDI  330 (341)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  330 (341)
                      +-++.+|.++.+.|+|++|+.+|++++++.|.+       ..++.++|.++.+.|++++|+.+|+++++++|+++.++..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            445566666666666666666666666553322       3456667777777777777777777777777777777776


Q ss_pred             HHHHHHHhh
Q psy16588        331 LRKLEQYFS  339 (341)
Q Consensus       331 l~~~~~~~~  339 (341)
                      +..+++.+.
T Consensus        86 l~~~~~~l~   94 (95)
T d1tjca_          86 LKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            666666553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.41  E-value=2e-13  Score=101.46  Aligned_cols=95  Identities=15%  Similarity=0.064  Sum_probs=65.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------
Q psy16588        230 SHVAIGISDTRLAIQCLHLALSIDSSH------------GLSQNNLAVLEAREGHIERASTYLQAAAASSPY--------  289 (341)
Q Consensus       230 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------  289 (341)
                      |..++..|+|++|+..|++++++.|..            ..+|.++|.+|..+|++++|+..+++++.+.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            555556666666666666666655442            245667777777777777777777777765432        


Q ss_pred             ---chhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy16588        290 ---LYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGH  324 (341)
Q Consensus       290 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  324 (341)
                         ...+++++|.+|..+|++++|+..|++++++.|..
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence               12367788888888888888888888888875543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.7e-12  Score=86.37  Aligned_cols=76  Identities=13%  Similarity=0.058  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16588        226 WYNISHVAIGISDTRLAIQCLHLALSIDSS-------HGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       226 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  298 (341)
                      ++.+|.++++.|+|++|+.+|++++++.|.       ...++.++|.++.+.|++++|+..|+++++++|++..++.+++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            444444444444444444444444443221       1344555555555555555555555555555555555555554


Q ss_pred             HHH
Q psy16588        299 VIS  301 (341)
Q Consensus       299 ~~~  301 (341)
                      .+.
T Consensus        88 ~~~   90 (95)
T d1tjca_          88 YFE   90 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.36  E-value=1.6e-12  Score=96.49  Aligned_cols=96  Identities=14%  Similarity=0.025  Sum_probs=66.8

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhhcccc----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------
Q psy16588        194 ALCCFYSQQYDMVVTCFERALSLALNE----------NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSS--------  255 (341)
Q Consensus       194 a~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------  255 (341)
                      |..++..|+|++|+..|++++++.|..          ....+|.++|.+|..+|++++|+..+++++++.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            556666666666666666666665543          01456777788888888888888888777765431        


Q ss_pred             ---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy16588        256 ---HGLSQNNLAVLEAREGHIERASTYLQAAAASSPY  289 (341)
Q Consensus       256 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  289 (341)
                         ...+++++|.+|..+|++++|+..|++++++.|.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence               1346778888888888888888888888887553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.33  E-value=1.1e-09  Score=88.27  Aligned_cols=175  Identities=11%  Similarity=0.107  Sum_probs=140.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhhccccchHHHHH
Q psy16588        152 CMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTCFERALSLALNENAADVWY  227 (341)
Q Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~  227 (341)
                      |+.+++.+|..+...+++++|+++|+++.+.  .+..+++.||.+|..    ..++..|..+++.+....  .  +.+..
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~--~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y--SNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--c--cchhh
Confidence            5789999999999999999999999999875  578899999999997    678999999999987653  4  66777


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhcCC----------------------------------CCHHHHHHHHHHHHH
Q psy16588        228 NISHVAIG----ISDTRLAIQCLHLALSIDS----------------------------------SHGLSQNNLAVLEAR  269 (341)
Q Consensus       228 ~la~~~~~----~g~~~~A~~~~~~al~~~p----------------------------------~~~~~~~~l~~~~~~  269 (341)
                      .+|.++..    ..+.+.|...++++.+..+                                  .+...++.+|.++..
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence            78777754    4677888888887765432                                  234456677777765


Q ss_pred             ----hCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16588        270 ----EGHIERASTYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLHPGHSYSWDILRKLEQ  336 (341)
Q Consensus       270 ----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  336 (341)
                          ..+...+..+++.+.+  ..+..+++++|.+|..    ..++++|+.+|+++.+.  +++.+.+.++.+..
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~  225 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQY  225 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             CCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHH
Confidence                4566777777777765  4578899999999988    67999999999999887  46788888887764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.28  E-value=7.1e-12  Score=100.71  Aligned_cols=128  Identities=9%  Similarity=-0.076  Sum_probs=78.2

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHH
Q psy16588        163 HFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLA  242 (341)
Q Consensus       163 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A  242 (341)
                      ....|++++|+..|+++++.+|.+...+..++.+++..|++++|+..|+++++++|+.  ...+..++.++...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~--~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY--LPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccccHHH
Confidence            3455666677777777777777776666677777766777777777777776666666  66666666666555444444


Q ss_pred             HHHHHHHHh-cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchh
Q psy16588        243 IQCLHLALS-IDSSHGLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYE  292 (341)
Q Consensus       243 ~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  292 (341)
                      ...+.+... ..|.....+...+.++...|++++|+..++++.+..|..+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            333322221 23444445555666666667777777777666666665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.27  E-value=4e-12  Score=102.18  Aligned_cols=131  Identities=9%  Similarity=-0.009  Sum_probs=112.8

Q ss_pred             HHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH
Q psy16588        195 LCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIE  274 (341)
Q Consensus       195 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  274 (341)
                      .-.+..|++++|+..|+++++.+|.+  ...+..++.++...|++++|+..|+++++++|++...+..++.++...+..+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d--~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            44567899999999999999999999  9999999999999999999999999999999999999999999988777777


Q ss_pred             HHHHHHHHHHH-hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q psy16588        275 RASTYLQAAAA-SSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYS  327 (341)
Q Consensus       275 ~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  327 (341)
                      ++...+.+... ..|.....+...+.++...|++++|...++++.++.|+.+..
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            66555444322 235555677788999999999999999999999999987543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=1.3e-10  Score=87.66  Aligned_cols=117  Identities=11%  Similarity=-0.160  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhccccchHHHHHHHHHH
Q psy16588        153 MEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDMVVTCFERALSLALNENAADVWYNISHV  232 (341)
Q Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~  232 (341)
                      .+.+...|......|++++|+..|.+++.+.+.........       +     .-.......+.+..  ..++..++.+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~-----~w~~~~r~~l~~~~--~~a~~~la~~   76 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------F-----QFVEPFATALVEDK--VLAHTAKAEA   76 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------S-----TTHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------h-----HHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            45566677777777777777777777777766654221111       1     11122223334444  6677777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        233 AIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       233 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      +...|++++|+..++++++.+|.+..+|..++.++...|++.+|+..|+++
T Consensus        77 ~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          77 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777776

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=2.4e-10  Score=86.11  Aligned_cols=61  Identities=15%  Similarity=0.097  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        257 GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                      ..++..++.++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4455555555555555555555555555555555555555555555555555555555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=6.9e-08  Score=66.02  Aligned_cols=83  Identities=11%  Similarity=-0.029  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16588        257 GLSQNNLAVLEAREG---HIERASTYLQAAAASSPYLY-ETHYNQAVISNLAGDLQESYNIVKKSLDLHPGHSYSWDILR  332 (341)
Q Consensus       257 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  332 (341)
                      ..+.+++|+++.+..   +.++++.+++.++..+|.+. +.+++||..|.++|+|++|..+++++++++|+|..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            567778888877654   45678888888888877654 68888888888888888888888888888888888888887


Q ss_pred             HHHHHhh
Q psy16588        333 KLEQYFS  339 (341)
Q Consensus       333 ~~~~~~~  339 (341)
                      .+...+.
T Consensus       115 ~Ie~~~~  121 (124)
T d2pqrb1         115 MVEDKIQ  121 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7776553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.60  E-value=8e-07  Score=62.93  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=55.3

Q ss_pred             ChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHH
Q psy16588        202 QYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAR----EGHIERAS  277 (341)
Q Consensus       202 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~  277 (341)
                      ++++|+.+|+++.+..  +  ..+.+.++.  ....++++|+.+|+++.+.  .++.+.+.+|.+|..    ..++++|+
T Consensus         8 d~~~A~~~~~kaa~~g--~--~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--E--MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--C--TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--C--hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            3445555555554432  2  223333332  2234555555555555443  345555555555544    34455666


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q psy16588        278 TYLQAAAASSPYLYETHYNQAVISNL----AGDLQESYNIVKKSLDLH  321 (341)
Q Consensus       278 ~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~  321 (341)
                      .+|+++.+.  .++.+.+.||.+|..    ..+..+|+.+|+++.+..
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            666665543  345555566665554    345666666666665543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=4.7e-07  Score=61.79  Aligned_cols=77  Identities=14%  Similarity=0.076  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHH
Q psy16588        223 ADVWYNISHVAIGIS---DTRLAIQCLHLALSIDSSHG-LSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQA  298 (341)
Q Consensus       223 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  298 (341)
                      ....+++|.++.+..   +.++|+..++++++.+|.+. +.++++|..|.++|+|++|..+++++++++|++..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            456666666666543   34567777777776666543 56677777777777777777777777777777666554433


Q ss_pred             H
Q psy16588        299 V  299 (341)
Q Consensus       299 ~  299 (341)
                      .
T Consensus       115 ~  115 (124)
T d2pqrb1         115 M  115 (124)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.58  E-value=9.6e-07  Score=62.48  Aligned_cols=108  Identities=9%  Similarity=0.099  Sum_probs=51.4

Q ss_pred             CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCChhHHHHH
Q psy16588        134 NMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY----SQQYDMVVTC  209 (341)
Q Consensus       134 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~  209 (341)
                      |+++|+.+|+++.+..  ++.+.+.++.  ....+.++|+++|+++.+.  .++.+.+.||.+|..    ..++.+|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            4555666666655443  3334444432  2234455555555555443  344455555555543    2344555555


Q ss_pred             HHHHHhhccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q psy16588        210 FERALSLALNENAADVWYNISHVAIG----ISDTRLAIQCLHLALS  251 (341)
Q Consensus       210 ~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  251 (341)
                      |+++.+.  .+  +.+.+.+|.+|..    ..++.+|+.+|+++.+
T Consensus        82 ~~~aa~~--g~--~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          82 YSKACGL--ND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHT--TC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             Hhhhhcc--Cc--chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            5555443  22  4444555555443    2345555555555444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.015  Score=49.33  Aligned_cols=120  Identities=13%  Similarity=0.047  Sum_probs=74.3

Q ss_pred             HcCChhHHHHHHHHHHhhcccc--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16588        199 YSQQYDMVVTCFERALSLALNE--NAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERA  276 (341)
Q Consensus       199 ~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  276 (341)
                      ...+.+.|...+.......+..  ........++..+...+..+.+...+........+.......++ .....+++..+
T Consensus       226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~  304 (450)
T d1qsaa1         226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGL  304 (450)
T ss_dssp             HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHH
T ss_pred             hccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHH
Confidence            3456666666666654443333  11122223333334456667777777766655444443344444 45567899988


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy16588        277 STYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLD  319 (341)
Q Consensus       277 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  319 (341)
                      ...+...-..........+.+|..+...|+.++|..+|..+..
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            8888764322223345778999999999999999999998865

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.11  E-value=0.0076  Score=48.75  Aligned_cols=170  Identities=9%  Similarity=0.055  Sum_probs=97.9

Q ss_pred             cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCh
Q psy16588        124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQY  203 (341)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  203 (341)
                      ..|..+.+.|.|+.|..+|...-        -+..+..++...++++.|.+++.+.     ++..+|..+...+......
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~   85 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF   85 (336)
T ss_dssp             ----------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHH
Confidence            45667778888888888887531        1344556777888888888877765     4667777777777766655


Q ss_pred             hHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16588        204 DMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSHGLSQNNLAVLEAREGHIERASTYLQAA  283 (341)
Q Consensus       204 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  283 (341)
                      .-+..+ ...+..   .  +.-...+...|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-.++++..
T Consensus        86 ~la~i~-~~~~~~---~--~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~  158 (336)
T d1b89a_          86 RLAQMC-GLHIVV---H--ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF  158 (336)
T ss_dssp             HHHHHT-TTTTTT---C--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             HHHHHH-HHHhhc---C--HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc
Confidence            443221 111111   2  3444556677777888888888888888777777777777777776543 34444444332


Q ss_pred             HH-hCCC-------chhHHHHHHHHHHHcCCHHHHHHH
Q psy16588        284 AA-SSPY-------LYETHYNQAVISNLAGDLQESYNI  313 (341)
Q Consensus       284 l~-~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~  313 (341)
                      -. .++.       ....|..+..+|.+.|++++|+..
T Consensus       159 s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~  196 (336)
T d1b89a_         159 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  196 (336)
T ss_dssp             STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHH
Confidence            11 1110       011345667777777887777554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.066  Score=45.09  Aligned_cols=188  Identities=8%  Similarity=-0.105  Sum_probs=132.2

Q ss_pred             cHHHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy16588        124 NLAKIFEGLNNMPMSVKYYKLILKRDATCMEAIAC----IGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFY  199 (341)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~----la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  199 (341)
                      ..+..-....+.+.|...+.......+.....+..    ++......+..+.+...+................++ ....
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~  297 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALG  297 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHH
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHH
Confidence            33444445568888988888877766655544333    333334557778888888877766655544444444 4556


Q ss_pred             cCChhHHHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------------------
Q psy16588        200 SQQYDMVVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLALSIDSSH-----------------------  256 (341)
Q Consensus       200 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------------  256 (341)
                      .+++..+...+...-......  ....+.+|..+...|+.++|...|..+... ++.                       
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~--~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~  374 (450)
T d1qsaa1         298 TGDRRGLNTWLARLPMEAKEK--DEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQN  374 (450)
T ss_dssp             HTCHHHHHHHHHHSCTTGGGS--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred             cCChHHHHHHHHhcCcccccH--HHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCcc
Confidence            789999988887654333333  788899999999999999999999997642 110                       


Q ss_pred             ------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16588        257 ------GLSQNNLAVLEAREGHIERASTYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKS  317 (341)
Q Consensus       257 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  317 (341)
                            ...-...+..+...|+...|...+..++..  .+..-...++.+..+.|.++.|+....++
T Consensus       375 ~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence                  011234567778899999999999888753  34567778899999999999999887776

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.85  E-value=0.32  Score=38.86  Aligned_cols=181  Identities=12%  Similarity=0.071  Sum_probs=105.7

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCChhH
Q psy16588        126 AKIFEGLNNMPMSVKYYKLILKRDATCMEAIACIGVNHFYNDQPEVALLFYRRLLQMGLYNAELFNNLALCCFYSQQYDM  205 (341)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  205 (341)
                      ..++...+++..|.+.+.+.     +....|..+...+....+..-+..+ ..   ..-.+++-...+...|...|.+++
T Consensus        47 ~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~  117 (336)
T d1b89a_          47 ASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFEE  117 (336)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChHH
Confidence            35566677777777766654     4677888888888777666543221 11   112244444566777888899999


Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCC-------HHHHHHHHHHHHHhCCHHHHH
Q psy16588        206 VVTCFERALSLALNENAADVWYNISHVAIGISDTRLAIQCLHLA-LSIDSSH-------GLSQNNLAVLEAREGHIERAS  277 (341)
Q Consensus       206 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~-------~~~~~~l~~~~~~~g~~~~A~  277 (341)
                      .+.+++.++...+.+  ...+..++.+|.+.+ .++-+++++.. -..++..       ...|-.+..+|.+.|++++|+
T Consensus       118 Li~~Le~~~~~~~~~--~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~  194 (336)
T d1b89a_         118 LITMLEAALGLERAH--MGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  194 (336)
T ss_dssp             HHHHHHHHTTSTTCC--HHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCccc--hHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHH
Confidence            999999988877777  778888888777653 45555555442 1111111       123455677778888888877


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy16588        278 TYLQAAAASSPYLYETHYNQAVISNLAGDLQESYNIVKKSLDLHP  322 (341)
Q Consensus       278 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  322 (341)
                      ..+-.    .|.+..-....-.++.+..+.+...+...-.++..|
T Consensus       195 ~~~i~----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p  235 (336)
T d1b89a_         195 ITMMN----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP  235 (336)
T ss_dssp             HHHHH----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred             HHHHH----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH
Confidence            66533    111111223333444445554444444444444444

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.46  E-value=6.8  Score=28.85  Aligned_cols=57  Identities=12%  Similarity=-0.007  Sum_probs=34.9

Q ss_pred             hhcHHHHHHHcCCchHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh-cCChHHHHHHHHH
Q psy16588        122 RLNLAKIFEGLNNMPMSVKYYKLILKRDAT-CMEAIACIGVNHFY-NDQPEVALLFYRR  178 (341)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~-~~~~~~A~~~~~~  178 (341)
                      .+.++.+..+.++|++.+.+.+++++.++. +.+-...+..+|-. .|....+...+..
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~   64 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSS   64 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            445667777888888888888888887765 33444445554432 2444445444443