Psyllid ID: psy16807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MCANYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTILKDDEIIIDSCVNFLKEA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHcHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHccccccccccccccccccEEEEEccccHHHHHcccccccHHHHccccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccHHHHHHHHHHHHcccccEEEEEEEEcccccccccHHHHHHHHHHHccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccccccHHHEEHHEEEcccccccHHHHccccccccccccccccEEEHEEEHccHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MCANYALIRLAMasptelkcLNCFRYLLSDSYWTVVSFLWipshvgirennlvdeaarnsneaplstictaDDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWakpwrenqltgqklkkikcdtrkwksstrdvRAEEIVVCRLRIGHCLATHQYLlerqnppachlcnevpiTIKHWLLECPRLNALRRKFKFGSCLKTILKDDEIIIDSCVNFLKEA
Flexible Loop (DISEMBL)
MCANYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARnsneaplstictADDYRAVFKKLQLEVWAFADDYRAVFKKVQLevwakpwrenqltgqklkkikcdtrkwksstrdvraeeiVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSclktilkddeiIIDSCVNFLKEA
Low Complexity Region (SEG)
MCANYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTILKDDEIIIDSCVNFLKEA
Disordered region (IsUnstruct)
**ANYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAA*****APLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTILKDDEIIIDSCVNFL***
Disordered Region (DISOPRED)
********RLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTILKDDEIIIDSCVNFLKEA
Disordered Region (DISEMBL)
MCANYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKC**********DVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTILKDDEIIIDSCVNFLKEA
Disordered Region (DISPRO)
MCANYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTILKDDEIIIDSCVNFLKEA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCANYALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTILKDDEIIIDSCVNFLKEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
328720146	164	PREDICTED: hypothetical protein LOC10056	0.686	0.920	0.298	8e-15
125901787	1222	pol-like protein [Biomphalaria glabrata]	0.8	0.144	0.306	1e-14
443733872	400	hypothetical protein CAPTEDRAFT_197082 [	0.609	0.335	0.344	5e-14
427791807	1212	Putative tick transposon, partial [Rhipi	0.877	0.159	0.295	8e-14
427791321	1210	Putative tick transposon, partial [Rhipi	0.877	0.159	0.295	8e-14
328696858	206	PREDICTED: hypothetical protein LOC10056	0.704	0.752	0.329	4e-13
427791063	1035	Putative tick transposon, partial [Rhipi	0.604	0.128	0.320	3e-12
443693558	502	hypothetical protein CAPTEDRAFT_189741,	0.586	0.256	0.335	6e-12
270002674	321	hypothetical protein TcasGA2_TC005227 [T	0.704	0.482	0.284	6e-12
443695973	261	hypothetical protein CAPTEDRAFT_23017, p	0.586	0.494	0.328	9e-12

>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial [Acyrthosiphon pisum]

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 20/171 (11%)

Query: 36  VSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAV 95
           + ++W P H GI+ N   D  A  +  +P + +              L ++ + D  + +
Sbjct: 5   ICYMWAPGHCGIQGNEKADLEASKAASSPDTPL--------------LNIYTYEDKKKQI 50

Query: 96  FKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQ 155
            K+V  + W   W  NQ T  KL +IK + + WK+   + R EE ++ RLRIGH   TH+
Sbjct: 51  -KQVLDQKWLIQWI-NQHT--KLNQIKNNIQTWKNPGLN-RKEETILNRLRIGHTFITHR 105

Query: 156 YLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTILKDD 206
           +L+E+ +PP C +C  V +T+KH + EC + + +R+K+     +   L  D
Sbjct: 106 HLMEKNDPPICEMCG-VDLTVKHIITECRKYDDMRKKYNISQQIGEALGPD 155

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata]

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 26/202 (12%)

Query: 6    ALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVD-EAARNSNEAP 64
            AL R+    P   K L     + +D     V+F+W+PSHVGI  N   D EA R  N A 
Sbjct: 1026 ALGRMKTDIPLVHKSLKLLDLITADR--RDVTFIWVPSHVGIEGNEAADREAKRALNHAV 1083

Query: 65   LSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKCD 124
              T     D R                  A +++     W   W     T  KL++I  D
Sbjct: 1084 SGTQIPYSDLRQSIAS-------------ATYRE-----WQNRWEAE--THSKLRQIVAD 1123

Query: 125  TRKWKSSTRDV-RAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLEC 183
             R W+ +++ + R     + RLRIGH   TH ++L+R+ PP C  C+   +T++H L++C
Sbjct: 1124 VR-WRPTSKGLTRRGSTTMSRLRIGHTYITHSFVLKREEPPLCEYCDSR-LTVEHILVDC 1181

Query: 184  PRLNALRRKFKFGSCLKTILKD 205
            PR   +R K    + LKT+  +
Sbjct: 1182 PRYQDVRAKHFRATNLKTLFNN 1203

Source: Biomphalaria glabrata

Species: Biomphalaria glabrata

Genus: Biomphalaria

Family: Planorbidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 40  WIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKV 99
           W PSHVG+  N   D  A+   EA   T CT              +   + D++ +  + 
Sbjct: 105 WCPSHVGVMGNERADLLAK---EALSFTTCT--------------IRIPSSDFKPITHEF 147

Query: 100 QLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLE 159
             E W + W   Q    KL  I+    KW  S+R++R EEIV+ R RIGH   TH YLL 
Sbjct: 148 YKEKWQEQWSSEQ--ENKLYCIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLLR 205

Query: 160 RQNPPACHLCNEVPITIKHWLLECPRLNALRRKF 193
           R+ PP C  C  + ++IKH  +EC   + L R+ 
Sbjct: 206 REMPPVCIPCQNI-LSIKHIFIECVDFDILLRRL 238

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 30/223 (13%)

Query: 6    ALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPL 65
            AL  L + S  E    +    +L +S    + F W+PSHVGI  N   D+ A  +    L
Sbjct: 1006 ALKALHIKSECEPLVGDILNMVLINSKVISMRFCWVPSHVGIPGNEKADKCASLAAHKTL 1065

Query: 66   STICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKCDT 125
            + I      R   K           D +   +   L  W + W  +  T  KL  +K   
Sbjct: 1066 TKI------RIPLK-----------DSQRTIRLALLAKWQQQW--DSCTSNKLHLVKPTL 1106

Query: 126  RKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPR 185
             +WK+     R  E+++CRLRIGH   TH +LL ++  P C  C E P+T+ H L+ CP 
Sbjct: 1107 GEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMCEKCQE-PLTLIHILILCPN 1165

Query: 186  LNALRRKFKFGSCLKT--------ILKDDEII-IDSCVNFLKE 219
            +   R+K+ F    K         +L DD ++ +   ++FLKE
Sbjct: 1166 IETQRQKY-FSKLYKQYIPLHPTLLLGDDALVPLPDVLSFLKE 1207

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 30/223 (13%)

Query: 6    ALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPL 65
            AL  L + S  E    +    +L +S    + F W+PSHVGI  N   D+ A  +    L
Sbjct: 1003 ALKALHIKSECEPLVGDILNMVLINSKVISMRFCWVPSHVGIPGNEKADKCASLAAHKTL 1062

Query: 66   STICTADDYRAVFKKLQLEVWAFADDYRAVFKKVQLEVWAKPWRENQLTGQKLKKIKCDT 125
            + I      R   K           D +   +   L  W + W  +  T  KL  +K   
Sbjct: 1063 TKI------RIPLK-----------DSQRTIRLALLAKWQQQW--DSCTSNKLHLVKPTL 1103

Query: 126  RKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLERQNPPACHLCNEVPITIKHWLLECPR 185
             +WK+     R  E+++CRLRIGH   TH +LL ++  P C  C E P+T+ H L+ CP 
Sbjct: 1104 GEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMCEKCQE-PLTLIHILILCPN 1162

Query: 186  LNALRRKFKFGSCLKT--------ILKDDEII-IDSCVNFLKE 219
            +   R+K+ F    K         +L DD ++ +   ++FLKE
Sbjct: 1163 IETQRQKY-FSKLYKQYIPLHPTLLLGDDALVPLPDVLSFLKE 1204

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696858|ref|XP_003240151.1| PREDICTED: hypothetical protein LOC100568880 [Acyrthosiphon pisum]

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 85/182 (46%), Gaps = 27/182 (14%)

Query: 43  SHVGIRENNLVD----EAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKK 98
           SH  I  N  VD    EAA ++N       CT                 + D  R +   
Sbjct: 40  SHSNIEGNEKVDCLPKEAANSTNLEISEKYCT-----------------YEDTLRCINTA 82

Query: 99  VQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLAT-HQYL 157
           ++ E W+  WR  +    KL +IK  T +WK+ +   R EE+++ RLRIGH   T H YL
Sbjct: 83  IE-EKWSLKWRRKE---TKLSEIKRTTDRWKNKSNLNRKEEVILTRLRIGHTRYTLHGYL 138

Query: 158 LERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTILKDDEIIIDSCVNFL 217
           + R++ P C  C  V +TIKH L+EC +  A R K+     L   L  +E  I   +N +
Sbjct: 139 MSREDQPTCATCG-VHLTIKHILVECRQTEAARTKYSIPEFLYQSLGPNESAIKQTLNLI 197

Query: 218 KE 219
           KE
Sbjct: 198 KE 199

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus]

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 20/153 (13%)

Query: 40   WIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRAVFKKV 99
            W+P H  I+ N L D+ A +++E    T                     A D + + K+ 
Sbjct: 898  WVPGHREIQGNVLADQLAASAHENAAHTFLAIP----------------ALDLKPLLKRK 941

Query: 100  QLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATHQYLLE 159
                W   W  +  T  KL  IK    +W  +++  R  EI + RLR GH   TH YLL 
Sbjct: 942  LRAYWQSIW--DTQTQNKLHAIKPQLGEWPPASKS-RRTEITLTRLRTGHTHTTHAYLLS 998

Query: 160  RQNPPACHLCNEVPITIKHWLLECPRLNALRRK 192
              +PP C  C E P+T+ H L++C  L+A+RRK
Sbjct: 999  GNDPPRCERCGE-PLTVLHILIQCNELDAMRRK 1030

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 35  VVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRA 94
           +V F+W PSHVGI  N + D  A+ +   P++             KL L       DY++
Sbjct: 179 LVVFIWCPSHVGILGNEVADRLAKQALVMPVT-------------KLPLP----HTDYKS 221

Query: 95  VFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATH 154
             +     +W   W E   T  KL  I+    +WK   +  R  EIV+ R RIGH   TH
Sbjct: 222 PIRSYVKSLWQNEWDEE--TDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTH 279

Query: 155 QYLLERQNPPACHLCNEVPITIKHWLLEC 183
            YLL R+  P C  C  + +T+KH L++C
Sbjct: 280 GYLLRREVAPFCIPCQSL-LTVKHILIDC 307

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|270002674|gb|EEZ99121.1| hypothetical protein TcasGA2_TC005227 [Tribolium castaneum]

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 24/179 (13%)

Query: 35  VVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRA 94
            V  +W+P+H GI EN   D+ A+   E                 +    ++    D + 
Sbjct: 153 AVHLIWVPAHYGIEENEHADQIAKQVPE----------------DQEPERLYPVYTDVQQ 196

Query: 95  VFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATH 154
             +     ++ + W  NQ T  KL++   + +KW SS    R EE+ + RLR+ H   T 
Sbjct: 197 TIRTKHANLFQQHW--NQSTA-KLREAYPNIKKWASSNLK-RGEEVTINRLRLRHTRLTQ 252

Query: 155 QYLLERQNPPACHLCNEVPITIKHWLLECPRLNALRRKFKFGSCLKTIL---KDDEIII 210
           +Y L++ +PP C  C E  +T++H LLECP+ + +R +  F + ++ IL    +D+I+I
Sbjct: 253 EYHLKKVDPPTCCYCEE-RLTVRHILLECPKYHDIRNEANFPNRMEDILSPKNEDKILI 310

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 35  VVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTICTADDYRAVFKKLQLEVWAFADDYRA 94
           +V F+W PSHVGI  N + D  A+ +   P++             KL L       DY++
Sbjct: 133 LVVFIWCPSHVGILGNEVADRLAKQALVMPVT-------------KLPLP----HTDYKS 175

Query: 95  VFKKVQLEVWAKPWRENQLTGQKLKKIKCDTRKWKSSTRDVRAEEIVVCRLRIGHCLATH 154
             +     +W   W E   T  KL  I+    +WK   +  R  EIV+ R RIGH   TH
Sbjct: 176 PIRSYVKSLWQNEWDEE--TDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTH 233

Query: 155 QYLLERQNPPACHLCNEVPITIKHWLLEC 183
            YLL R+  P C  C  + +++KH L++C
Sbjct: 234 GYLLRREVAPFCIPCQSL-LSVKHILIDC 261

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	220
cd09276	128	cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom	6e-05

>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 6   ALIRLAMASPTELKCLNCFRYLLSDSYWTVVSFLWIPSHVGIRENNLVDEAAR 58
           AL     +SP  L+     R  L++    V    W+P H GI  N   D  A+
Sbjct: 74  ALRSPRSSSPLVLRIRKAIR-ELANHGVKV-RLHWVPGHSGIEGNERADRLAK 124

Ribonuclease H (RNase H) is classified into two families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). Ribonuclease HI (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as an adjunct domain to the reverse transcriptase gene in retroviruses, long-term repeat (LTR)-bearing retrotransposons and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD), are unvaried across all RNase H domains. The position of the RNase domain of non-LTR and LTR transposons is at the carboxyl terminal of the reverse transcriptase (RT) domain and their RNase domains group together, indicating a common evolutionary origin. Many non-LTR transposons have lost the RNase domain because their activity is at the nucleus and cellular RNase may suffice; however LTR retotransposons always encode their own RNase domain because it requires RNase activity in RNA-protein particles in the cytoplasm. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PRK08719	147	ribonuclease H; Reviewed	98.72
PF00075	132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	98.66
PRK00203	150	rnhA ribonuclease H; Reviewed	98.64
PRK06548	161	ribonuclease H; Provisional	98.56
COG0328	154	RnhA Ribonuclease HI [DNA replication, recombinati	98.29
cd06222	130	RnaseH RNase H (RNase HI) is an endonuclease that	97.9
KOG3752|consensus	371		97.8
PF13966	86	zf-RVT: zinc-binding in reverse transcriptase	97.22
PRK13907	128	rnhA ribonuclease H; Provisional	91.38
PRK07708	219	hypothetical protein; Validated	84.25

>PRK08719 ribonuclease H; Reviewed

Probab=98.72  E-value=8e-09  Score=81.66  Aligned_cols=30  Identities=27%  Similarity=0.306  Sum_probs=27.8

Q ss_pred             CceEEEEEeccCCCCCcchhhhHHhhcccc
Q psy16807         33 WTVVSFLWIPSHVGIRENNLVDEAARNSNE   62 (220)
Q Consensus        33 ~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~   62 (220)
                      ...|+|.|||||+|++|||.||++|++|+.
T Consensus       117 ~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~  146 (147)
T PRK08719        117 RKYVEVEKVTAHSGIEGNEAADMLAQAAAE  146 (147)
T ss_pred             CCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence            457999999999999999999999999875

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site

Probab=98.66  E-value=8.2e-09  Score=78.86  Aligned_cols=30  Identities=30%  Similarity=0.599  Sum_probs=27.7

Q ss_pred             CCceEEEEEeccCCCC-CcchhhhHHhhccc
Q psy16807         32 YWTVVSFLWIPSHVGI-RENNLVDEAARNSN   61 (220)
Q Consensus        32 ~~~~V~l~WVPgH~GI-~GNE~AD~~AK~A~   61 (220)
                      .+..|.|.|||||+|+ .|||.||++||+|+
T Consensus       101 ~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~  131 (132)
T PF00075_consen  101 RGIKVRFRWVPGHSGVPQGNERADRLAKEAA  131 (132)
T ss_dssp             HSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred             cceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence            3679999999999999 69999999999986

This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....

>PRK00203 rnhA ribonuclease H; Reviewed

Probab=98.64  E-value=1.2e-08  Score=80.61  Aligned_cols=31  Identities=32%  Similarity=0.579  Sum_probs=28.9

Q ss_pred             ceEEEEEeccCCCCCcchhhhHHhhccccCC
Q psy16807         34 TVVSFLWIPSHVGIRENNLVDEAARNSNEAP   64 (220)
Q Consensus        34 ~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~   64 (220)
                      ..|.|.|||||+|++|||.||++||+|+...
T Consensus       113 ~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~~  143 (150)
T PRK00203        113 HQIKWHWVKGHAGHPENERCDELARAGAEEA  143 (150)
T ss_pred             CceEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999998764

>PRK06548 ribonuclease H; Provisional

Probab=98.56  E-value=3.1e-08  Score=79.42  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=28.9

Q ss_pred             ceEEEEEeccCCCCCcchhhhHHhhccccCCC
Q psy16807         34 TVVSFLWIPSHVGIRENNLVDEAARNSNEAPL   65 (220)
Q Consensus        34 ~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~~   65 (220)
                      ..|+|.|||||+|++|||.||+||++|+....
T Consensus       113 ~~v~~~wVkgHsg~~gNe~aD~LA~~aa~~~~  144 (161)
T PRK06548        113 RNIRMSWVNAHTGHPLNEAADSLARQAANNFS  144 (161)
T ss_pred             CceEEEEEecCCCCHHHHHHHHHHHHHHHHhc
Confidence            47999999999999999999999999986543

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]

Probab=98.29  E-value=3.6e-07  Score=72.52  Aligned_cols=30  Identities=33%  Similarity=0.592  Sum_probs=28.7

Q ss_pred             eEEEEEeccCCCCCcchhhhHHhhccccCC
Q psy16807         35 VVSFLWIPSHVGIRENNLVDEAARNSNEAP   64 (220)
Q Consensus        35 ~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~   64 (220)
                      .|.+.|||||.|.++||.||++|+.|+...
T Consensus       117 ~v~~~WVkgH~g~~~NeraD~LA~~~~~~~  146 (154)
T COG0328         117 LVFWEWVKGHAGHPENERADQLAREAARAA  146 (154)
T ss_pred             eEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999998865

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner

Probab=97.90  E-value=8.5e-06  Score=59.93  Aligned_cols=30  Identities=33%  Similarity=0.674  Sum_probs=27.5

Q ss_pred             CCceEEEEEeccCCCCCcchhhhHHhhccc
Q psy16807         32 YWTVVSFLWIPSHVGIRENNLVDEAARNSN   61 (220)
Q Consensus        32 ~~~~V~l~WVPgH~GI~GNE~AD~~AK~A~   61 (220)
                      ....+.|.|||+|+|+.+|+.||.+||+|.
T Consensus       101 ~~~~~~i~~v~~h~~~~~n~~ad~la~~~~  130 (130)
T cd06222         101 RFHKVRFEWVPGHSGIEGNERADALAKEAA  130 (130)
T ss_pred             CCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence            456899999999999999999999999873

One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.

>KOG3752|consensus

Probab=97.80  E-value=1.2e-05  Score=71.47  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=29.1

Q ss_pred             CCceEEEEEeccCCCCCcchhhhHHhhccccC
Q psy16807         32 YWTVVSFLWIPSHVGIRENNLVDEAARNSNEA   63 (220)
Q Consensus        32 ~~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~   63 (220)
                      .+.+|++.|||||.||.|||+||.+|++++..
T Consensus       334 ~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs~~  365 (371)
T KOG3752|consen  334 SNKKVQQEYVGGHSGILGNEMADALARKGSTL  365 (371)
T ss_pred             ccCceEEEEecCcCCcchHHHHHHHHhhhhhh
Confidence            45899999999999999999999999998653

>PF13966 zf-RVT: zinc-binding in reverse transcriptase

Probab=97.22  E-value=0.0002  Score=51.22  Aligned_cols=42  Identities=29%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             cccccccc---hhhhhccCCCCCcccCCCcccccccccccccCcH
Q psy16807        146 RIGHCLAT---HQYLLERQNPPACHLCNEVPITIKHWLLECPRLN  187 (220)
Q Consensus       146 RTGH~~~~---~l~r~~~~~~p~C~~Cg~~~et~~HiL~~Cp~~~  187 (220)
                      +.-|.++.   -+.+.+...++.|+.||.+.||++|+|++||...
T Consensus        39 ~~~~~rL~t~~~l~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~   83 (86)
T PF13966_consen   39 RALHNRLPTKDNLQRRGIQVDPICPLCGNEEETIEHLFFHCPFAR   83 (86)
T ss_pred             eeccccchhhhhhhccCCccCCccccCCCccccccceeccCcCcc
Confidence            34445542   3666777788999999988999999999999753

>PRK13907 rnhA ribonuclease H; Provisional

Probab=91.38  E-value=0.11  Score=39.31  Aligned_cols=25  Identities=36%  Similarity=0.594  Sum_probs=21.6

Q ss_pred             ceEEEEEeccCCCCCcchhhhHHhhcccc
Q psy16807         34 TVVSFLWIPSHVGIRENNLVDEAARNSNE   62 (220)
Q Consensus        34 ~~V~l~WVPgH~GI~GNE~AD~~AK~A~~   62 (220)
                      ..+.|.|||.    ++|+.||.+|++|..
T Consensus       102 ~~~~~~~v~r----~~N~~Ad~LA~~a~~  126 (128)
T PRK13907        102 DLFFIKWIPS----SQNKVADELARKAIL  126 (128)
T ss_pred             CceEEEEcCc----hhchhHHHHHHHHHh
Confidence            3677899999    499999999999875

>PRK07708 hypothetical protein; Validated

Probab=84.25  E-value=0.85  Score=38.36  Aligned_cols=28  Identities=18%  Similarity=0.128  Sum_probs=22.6

Q ss_pred             CceEEEEEeccCCCCCcchhhhHHhhccccCC
Q psy16807         33 WTVVSFLWIPSHVGIRENNLVDEAARNSNEAP   64 (220)
Q Consensus        33 ~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~   64 (220)
                      ...+.+.|||-    .-|+.||++|++|.+..
T Consensus       182 ~l~~~~~~VpR----~~N~~AD~LAk~Al~~~  209 (219)
T PRK07708        182 KLTPVYEPISR----KQNKEADQLATQALEGT  209 (219)
T ss_pred             CceEEEEECCc----hhhhHHHHHHHHHHhcC
Confidence            34577888876    56999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
3qio_A	150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	98.8
2qkb_A	154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	98.8
3h08_A	146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	98.79
1jl1_A	155	Ribonuclease HI; RNAse HI, protein stability, ther	98.79
2e4l_A	158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	98.73
2kq2_A	147	Ribonuclease H-related protein; PSI, NESG, protein	98.71
3p1g_A	165	Xenotropic murine leukemia virus-related virus (X	98.64
1ril_A	166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	98.61
1mu2_A	555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	98.23
2lsn_A	165	Reverse transcriptase; RNAse H, viral protein; NMR	98.18
2zd1_A	557	Reverse transcriptase/ribonuclease H; P51/P66, het	98.14
3hst_B	141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	96.92
3u3g_D	140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	96.91
2ehg_A	149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	96.79

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A

Probab=98.80  E-value=2e-09  Score=84.11  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=29.7

Q ss_pred             CCceEEEEEeccCCCCCcchhhhHHhhccccC
Q psy16807         32 YWTVVSFLWIPSHVGIRENNLVDEAARNSNEA   63 (220)
Q Consensus        32 ~~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~   63 (220)
                      ....|.|.|||||+|++|||.||+|||+|+..
T Consensus       116 ~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~  147 (150)
T 3qio_A          116 KKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK  147 (150)
T ss_dssp             TCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred             hcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999875

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*

Probab=98.80  E-value=1.7e-09  Score=84.56  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             CCceEEEEEeccCCCCCcchhhhHHhhccccCC
Q psy16807         32 YWTVVSFLWIPSHVGIRENNLVDEAARNSNEAP   64 (220)
Q Consensus        32 ~~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~   64 (220)
                      .+..|.|.|||||+|++|||.||+|||+|+..+
T Consensus       120 ~~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~  152 (154)
T 2qkb_A          120 QGMDIQWMHVPGHSGFIGNEEADRLAREGAKQS  152 (154)
T ss_dssp             TTCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred             cCCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence            356899999999999999999999999998764

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}

Probab=98.79  E-value=6e-10  Score=86.24  Aligned_cols=30  Identities=27%  Similarity=0.214  Sum_probs=27.0

Q ss_pred             ceEEEEEeccCCCCCcchhhhHHhhccccC
Q psy16807         34 TVVSFLWIPSHVGIRENNLVDEAARNSNEA   63 (220)
Q Consensus        34 ~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~   63 (220)
                      ..|.|.|||||+|++|||.||+|||+|+..
T Consensus       115 ~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~  144 (146)
T 3h08_A          115 HRVTFHKVKGHSDNPYNSRADELARLAIKE  144 (146)
T ss_dssp             SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence            579999999999999999999999999864

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...

Probab=98.79  E-value=1.8e-09  Score=84.64  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=31.5

Q ss_pred             CCceEEEEEeccCCCCCcchhhhHHhhccccCCCC
Q psy16807         32 YWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPLS   66 (220)
Q Consensus        32 ~~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~~~   66 (220)
                      ....|.|.|||||+|++|||.||+|||+|+..+..
T Consensus       112 ~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~  146 (155)
T 1jl1_A          112 GQHQIKWEWVKGHAGHPENERADELARAAAMNPTL  146 (155)
T ss_dssp             TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred             ccCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence            34689999999999999999999999999987654

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A

Probab=98.73  E-value=3.2e-09  Score=83.49  Aligned_cols=31  Identities=32%  Similarity=0.586  Sum_probs=29.3

Q ss_pred             CceEEEEEeccCCCCCcchhhhHHhhccccC
Q psy16807         33 WTVVSFLWIPSHVGIRENNLVDEAARNSNEA   63 (220)
Q Consensus        33 ~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~   63 (220)
                      ...|.|.|||||+|++|||.||+|||+|+..
T Consensus       115 ~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~  145 (158)
T 2e4l_A          115 LHQIDWRWVKGHAGHAENERCDQLARAAAEA  145 (158)
T ss_dssp             TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred             cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999987

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A

Probab=98.71  E-value=1.2e-09  Score=84.90  Aligned_cols=32  Identities=25%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             eEEEEEeccCCCCCcchhhhHHhhccccCCCC
Q psy16807         35 VVSFLWIPSHVGIRENNLVDEAARNSNEAPLS   66 (220)
Q Consensus        35 ~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~~~   66 (220)
                      .|.|.|||||+|++|||.||+|||+|+.....
T Consensus       109 ~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~  140 (147)
T 2kq2_A          109 IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL  140 (147)
T ss_dssp             TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred             CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence            89999999999999999999999999987654

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A

Probab=98.64  E-value=3.4e-09  Score=84.13  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             CCceEEEEEeccCCC-----CCcchhhhHHhhccccCCC
Q psy16807         32 YWTVVSFLWIPSHVG-----IRENNLVDEAARNSNEAPL   65 (220)
Q Consensus        32 ~~~~V~l~WVPgH~G-----I~GNE~AD~~AK~A~~~~~   65 (220)
                      .+..|.|.|||||+|     ++|||.||++||+|+..+.
T Consensus       120 ~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~  158 (165)
T 3p1g_A          120 LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV  158 (165)
T ss_dssp             SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence            567999999999999     9999999999999998654

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A

Probab=98.61  E-value=7.7e-09  Score=82.00  Aligned_cols=33  Identities=30%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             CceEEEEEeccCCCCCcchhhhHHhhccccCCC
Q psy16807         33 WTVVSFLWIPSHVGIRENNLVDEAARNSNEAPL   65 (220)
Q Consensus        33 ~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~~   65 (220)
                      ...|.|.|||||+|++|||.||+|||+|+....
T Consensus       118 ~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~  150 (166)
T 1ril_A          118 PHRVRFHFVKGHTGHPENERVDREARRQAQSQA  150 (166)
T ss_dssp             TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred             cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence            358999999999999999999999999998754

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B

Probab=98.23  E-value=4.2e-07  Score=84.54  Aligned_cols=31  Identities=26%  Similarity=0.421  Sum_probs=28.4

Q ss_pred             cCCceEEEEEeccCCCCCcchhhhHHhhccc
Q psy16807         31 SYWTVVSFLWIPSHVGIRENNLVDEAARNSN   61 (220)
Q Consensus        31 ~~~~~V~l~WVPgH~GI~GNE~AD~~AK~A~   61 (220)
                      .....|.|.|||||+|++|||.||+|||+|+
T Consensus       525 ~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~  555 (555)
T 1mu2_A          525 IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI  555 (555)
T ss_dssp             HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence            4567899999999999999999999999984

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}

Probab=98.18  E-value=3.5e-07  Score=72.47  Aligned_cols=29  Identities=17%  Similarity=0.154  Sum_probs=26.1

Q ss_pred             ceEEEEEeccCCCC------CcchhhhHHhhcccc
Q psy16807         34 TVVSFLWIPSHVGI------RENNLVDEAARNSNE   62 (220)
Q Consensus        34 ~~V~l~WVPgH~GI------~GNE~AD~~AK~A~~   62 (220)
                      ..|.|.|||||+|+      +|||.||+||++|+.
T Consensus       128 ~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~  162 (165)
T 2lsn_A          128 PDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY  162 (165)
T ss_dssp             TTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence            47999999999996      589999999999874

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...

Probab=98.14  E-value=6e-07  Score=83.58  Aligned_cols=30  Identities=30%  Similarity=0.483  Sum_probs=25.2

Q ss_pred             cCCceEEEEEeccCCCCCcchhhhHHhhcc
Q psy16807         31 SYWTVVSFLWIPSHVGIRENNLVDEAARNS   60 (220)
Q Consensus        31 ~~~~~V~l~WVPgH~GI~GNE~AD~~AK~A   60 (220)
                      .....|.|.|||||+|++|||.||+|||+|
T Consensus       528 ~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a  557 (557)
T 2zd1_A          528 IKKEKVYLAWVPAHKGIGGNEQVDKLVSAG  557 (557)
T ss_dssp             HHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred             hcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence            456789999999999999999999999986

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}

Probab=96.92  E-value=0.00031  Score=52.83  Aligned_cols=28  Identities=21%  Similarity=0.592  Sum_probs=24.8

Q ss_pred             CceEEEEEeccCCCCCcchhhhHHhhccccCC
Q psy16807         33 WTVVSFLWIPSHVGIRENNLVDEAARNSNEAP   64 (220)
Q Consensus        33 ~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~   64 (220)
                      ...|+|.|||+    +|||.||+|||+|....
T Consensus       107 ~~~v~~~~V~~----~~N~~AD~LA~~a~~~~  134 (141)
T 3hst_B          107 FRRINYEWVPR----ARNTYADRLANDAMDAA  134 (141)
T ss_dssp             SSEEEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCC----cccHHHHHHHHHHHHHh
Confidence            46999999996    99999999999998653

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}

Probab=96.91  E-value=0.0002  Score=53.71  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=23.1

Q ss_pred             ceEEEEEeccCCCCCcchhhhHHhhccccC
Q psy16807         34 TVVSFLWIPSHVGIRENNLVDEAARNSNEA   63 (220)
Q Consensus        34 ~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~   63 (220)
                      ..|+|.|||+    +|||.||+|||+|...
T Consensus       112 ~~v~~~~V~~----~~N~~AD~LA~~a~~~  137 (140)
T 3u3g_D          112 PNLVFVHIPR----EKNARADELVNEAIDK  137 (140)
T ss_dssp             TTCEEEECCG----GGGHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCc----hhhHHHHHHHHHHHHh
Confidence            3899999995    9999999999999754

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A

Probab=96.79  E-value=0.00031  Score=53.72  Aligned_cols=26  Identities=27%  Similarity=0.547  Sum_probs=23.2

Q ss_pred             eEEEEEeccCCCCCcchhhhHHhhccccCC
Q psy16807         35 VVSFLWIPSHVGIRENNLVDEAARNSNEAP   64 (220)
Q Consensus        35 ~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~   64 (220)
                      .|.|.|||+    ++||.||+|||+|+...
T Consensus       110 ~v~~~~V~~----~~N~~AD~LA~~a~~~~  135 (149)
T 2ehg_A          110 NATLIWVPR----EENKEADRLSRVAYELV  135 (149)
T ss_dssp             TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence            499999999    59999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1jl1a_	152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	99.2
d1mu2a1	126	HIV RNase H (Domain of reverse transcriptase) {Hum	99.09
d1rila_	147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	99.05
d1s1ta1	110	HIV RNase H (Domain of reverse transcriptase) {Hum	84.18

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2.4e-12  Score=98.13  Aligned_cols=43  Identities=26%  Similarity=0.296  Sum_probs=35.6

Q ss_pred             HHhhccCCceEEEEEeccCCCCCcchhhhHHhhccccCCCCCC
Q psy16807         26 YLLSDSYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAPLSTI   68 (220)
Q Consensus        26 ~~l~~~~~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~~~~~   68 (220)
                      .+........|+|+|||||+|++|||.||+|||+|+..+....
T Consensus       104 ~i~~~~~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~~~~~d  146 (152)
T d1jl1a_         104 RLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMNPTLED  146 (152)
T ss_dssp             HHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCBCC
T ss_pred             HHHHHhhcceeEEEEecccCCCccHHHHHHHHHHHHhCCCCCc
Confidence            3333345568999999999999999999999999999876554

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=99.09  E-value=3.5e-11  Score=89.33  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=27.3

Q ss_pred             CCceEEEEEeccCCCCCcchhhhHHhhccc
Q psy16807         32 YWTVVSFLWIPSHVGIRENNLVDEAARNSN   61 (220)
Q Consensus        32 ~~~~V~l~WVPgH~GI~GNE~AD~~AK~A~   61 (220)
                      ....|.|.|||||+|++|||.||+|||+|.
T Consensus        97 ~~~~v~~~wV~gH~g~~gNe~AD~LA~~ai  126 (126)
T d1mu2a1          97 KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI  126 (126)
T ss_dssp             HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             hcceeEEEEEeCCCCCcchHHHHHHHHhhC
Confidence            346899999999999999999999999984

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=1.5e-11  Score=93.53  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             cCCceEEEEEeccCCCCCcchhhhHHhhccccCC
Q psy16807         31 SYWTVVSFLWIPSHVGIRENNLVDEAARNSNEAP   64 (220)
Q Consensus        31 ~~~~~V~l~WVPgH~GI~GNE~AD~~AK~A~~~~   64 (220)
                      .....|+|.|||||+|++|||.||+|||+|+...
T Consensus       111 ~~~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~~  144 (147)
T d1rila_         111 MAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ  144 (147)
T ss_dssp             HTTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred             hhhcccceEEccCCCCCcchHHHHHHHHHHHHHh
Confidence            3456899999999999999999999999998765

>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=84.18  E-value=0.19  Score=34.71  Aligned_cols=12  Identities=33%  Similarity=0.805  Sum_probs=10.6

Q ss_pred             CceEEEEEeccC
Q psy16807         33 WTVVSFLWIPSH   44 (220)
Q Consensus        33 ~~~V~l~WVPgH   44 (220)
                      ...|.|.|||||
T Consensus        99 ~~~v~i~WVpgH  110 (110)
T d1s1ta1          99 KEKVYLAWVPAH  110 (110)
T ss_dssp             CSEEEEEECCSS
T ss_pred             CCceEEEEeCCC
Confidence            358999999999