Psyllid ID: psy16850

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MDTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDMIDLTPKS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHccccccccEEccccccccccEEEEcccEEEEEEEccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHcccccccccEEEccccccccHHcccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHccccEEHHHHHHHHHcccccccccccccEEEEEccccccccHHHcHHHHHHHHHHHHHHccccccEcccccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHcccccccccHHHHHHcc
Coil and Loop (DISEMBL)
mdttmrepfpyedffHEQIMKKKRDHSYRVFKKVNRLatnfpaayeytdsekeVTVYCsndylgmschpkVKSAVREALEKfgtgaggtrnisgnslfHEKLEEDVARLHQKEAGLVFTSCyvandstlftlGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDMIDLTPKS
Flexible Loop (DISEMBL)
mdttmrepfpyedffheqiMKKKRDHSYRVFKKVnrlatnfpaayeytdsekEVTVYCSNDYLGMSCHPKVKSAVREALEKfgtgaggtrnisGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELqedmidltpks
Low Complexity Region (SEG)
MDTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDMIDLTPKS
Disordered region (IsUnstruct)
**********YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIK*****************
Disordered Region (DISOPRED)
**********YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDMID*****
Disordered Region (DISEMBL)
MDTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDMIDLTPKS
Disordered Region (DISPRO)
******EPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQE***DL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDMIDLTPKS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
P43090	582	5-aminolevulinate synthas	N/A	N/A	0.781	0.233	0.604	2e-45
P43091	627	5-aminolevulinate synthas	N/A	N/A	0.741	0.205	0.621	2e-43
Q9XS79	640	5-aminolevulinate synthas	N/A	N/A	0.741	0.201	0.621	2e-43
P22557	587	5-aminolevulinate synthas	no	N/A	0.741	0.219	0.575	7e-43
Q5R557	587	5-aminolevulinate synthas	yes	N/A	0.741	0.219	0.575	1e-42
Q9YHT4	583	5-aminolevulinate synthas	yes	N/A	0.781	0.233	0.575	1e-42
A6QLI6	647	5-aminolevulinate synthas	yes	N/A	0.741	0.199	0.621	4e-42
P13195	642	5-aminolevulinate synthas	yes	N/A	0.741	0.200	0.613	1e-41
Q3ZC31	587	5-aminolevulinate synthas	no	N/A	0.741	0.219	0.583	1e-41
Q9XT75	582	5-aminolevulinate synthas	N/A	N/A	0.741	0.221	0.583	1e-41

>sp|P43090|HEM0_OPSTA 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Opsanus tau GN=alas2 PE=2 SV=1

 Score =  181 bits (460), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 3/139 (2%)

Query: 2   DTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKE---VTVYC 58
           D  +   F Y++FF+E+I +KKRDH+YRVFK VNR A  FP A +Y+ S+++   V+V+C
Sbjct: 131 DNMVGPSFDYDNFFNEKIAEKKRDHTYRVFKTVNRNAVVFPFAEDYSVSDRQGSQVSVWC 190

Query: 59  SNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVF 118
           SNDYLGMS HP+V  A+RE LE+ G GAGGTRNISG S +H  LE+++A LHQK+A LVF
Sbjct: 191 SNDYLGMSRHPRVLEAIREVLERHGAGAGGTRNISGTSKYHVTLEKELAHLHQKDAALVF 250

Query: 119 TSCYVANDSTLFTLGKMIP 137
           +SC+VANDSTLFTL KM+P
Sbjct: 251 SSCFVANDSTLFTLAKMLP 269

Opsanus tau (taxid: 8068)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 7

>sp|P43091|HEM1_OPSTA 5-aminolevulinate synthase, nonspecific, mitochondrial OS=Opsanus tau GN=alas1 PE=2 SV=1

 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 106/132 (80%), Gaps = 3/132 (2%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS---EKEVTVYCSNDYLGM 65
           F Y++FF ++I +KK DH+YRVFK VNRLA  FP A ++T S   ++EV+V+CSNDYLGM
Sbjct: 184 FYYDNFFEKKIEEKKSDHTYRVFKTVNRLANEFPMADDFTGSLEDKREVSVWCSNDYLGM 243

Query: 66  SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
           S HP+V  A+ E L K G+GAGGTRNISG S FH +LE+++A LH+K+A L+FTSC+VAN
Sbjct: 244 SRHPRVAQAIMETLRKHGSGAGGTRNISGTSKFHVELEQELADLHRKDAALLFTSCFVAN 303

Query: 126 DSTLFTLGKMIP 137
           DSTLFTL KM+P
Sbjct: 304 DSTLFTLAKMLP 315

Opsanus tau (taxid: 8068)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XS79|HEM1_DELLE 5-aminolevulinate synthase, nonspecific, mitochondrial OS=Delphinapterus leucas GN=ALAS1 PE=2 SV=1

 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 105/132 (79%), Gaps = 3/132 (2%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS---EKEVTVYCSNDYLGM 65
           F Y+ FF ++I +KK DH+YRVFK VNR A  FP A +Y+DS   +K+V+V+CSNDYLGM
Sbjct: 197 FQYDHFFEKKIDEKKNDHTYRVFKTVNRRAQFFPMADDYSDSLVTKKQVSVWCSNDYLGM 256

Query: 66  SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
           SCHP+V  AV + L++ GTGAGGTRNISG S FH  LE+++A LH K+A L+F+SC+VAN
Sbjct: 257 SCHPRVCGAVMDTLKQHGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVAN 316

Query: 126 DSTLFTLGKMIP 137
           DSTLFTL KM+P
Sbjct: 317 DSTLFTLAKMMP 328

Delphinapterus leucas (taxid: 9749)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P22557|HEM0_HUMAN 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Homo sapiens GN=ALAS2 PE=1 SV=2

 Score =  172 bits (437), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 76/132 (57%), Positives = 105/132 (79%), Gaps = 3/132 (2%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSE---KEVTVYCSNDYLGM 65
           F Y+ FF ++IM+KK+DH+YRVFK VNR A  +P A  ++++    K+V+V+CSNDYLGM
Sbjct: 143 FSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSNDYLGM 202

Query: 66  SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
           S HP+V  A +E L++ G GAGGTRNISG S FH +LE+++A LHQK++ L+F+SC+VAN
Sbjct: 203 SRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVAN 262

Query: 126 DSTLFTLGKMIP 137
           DSTLFTL K++P
Sbjct: 263 DSTLFTLAKILP 274

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q5R557|HEM0_PONAB 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Pongo abelii GN=ALAS2 PE=1 SV=1

 Score =  172 bits (436), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/132 (57%), Positives = 105/132 (79%), Gaps = 3/132 (2%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSE---KEVTVYCSNDYLGM 65
           F Y+ FF ++IM+KK+DH+YRVFK VNR A  +P A  ++++    K+V+V+CSNDYLGM
Sbjct: 143 FSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSNDYLGM 202

Query: 66  SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
           S HP+V  A +E L++ G GAGGTRNISG S FH +LE+++A LHQK++ L+F+SC+VAN
Sbjct: 203 SRHPQVLRATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVAN 262

Query: 126 DSTLFTLGKMIP 137
           DSTLFTL K++P
Sbjct: 263 DSTLFTLAKILP 274

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9YHT4|HEM0_DANRE 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Danio rerio GN=alas2 PE=2 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 107/139 (76%), Gaps = 3/139 (2%)

Query: 2   DTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEK---EVTVYC 58
           D   R  F Y++FF ++I++KK+DH+YR+FK VNR A  FP A +Y+ + +   +V+V+C
Sbjct: 131 DNFNRPTFSYDEFFTQKIVEKKKDHTYRIFKTVNRFAEVFPFAEDYSIAGRLGSQVSVWC 190

Query: 59  SNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVF 118
           SNDYLGMS HP+V  A+ +AL+K G GAGGTRNISG S +H  LE ++ARLHQK+  LVF
Sbjct: 191 SNDYLGMSRHPRVVKAIGDALKKHGAGAGGTRNISGTSNYHVALENELARLHQKDGALVF 250

Query: 119 TSCYVANDSTLFTLGKMIP 137
           +SC+VANDSTLFTL KM+P
Sbjct: 251 SSCFVANDSTLFTLAKMLP 269

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|A6QLI6|HEM1_BOVIN 5-aminolevulinate synthase, nonspecific, mitochondrial OS=Bos taurus GN=ALAS1 PE=2 SV=1

 Score =  170 bits (430), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 104/132 (78%), Gaps = 3/132 (2%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS---EKEVTVYCSNDYLGM 65
           F Y+ FF ++I +KK DHSYRVFK VNR A  FP A +Y+DS   +K+V+V+CSNDYLGM
Sbjct: 204 FQYDRFFEKKIDEKKNDHSYRVFKTVNRKAQCFPMADDYSDSLISKKQVSVWCSNDYLGM 263

Query: 66  SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
           S HP+V  AV + L++ GTGAGGTRNISG S FH  LE+++A LH K+A L+F+SC+VAN
Sbjct: 264 SRHPRVCGAVIDTLKQHGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVAN 323

Query: 126 DSTLFTLGKMIP 137
           DSTLFTL KM+P
Sbjct: 324 DSTLFTLAKMMP 335

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P13195|HEM1_RAT 5-aminolevulinate synthase, nonspecific, mitochondrial OS=Rattus norvegicus GN=Alas1 PE=2 SV=2

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 104/132 (78%), Gaps = 3/132 (2%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS---EKEVTVYCSNDYLGM 65
           F Y+ FF ++I +KK DH+YRVFK VNR A  FP A +YTDS   +K+V+V+CSNDYLGM
Sbjct: 199 FQYDHFFEKKIDEKKNDHTYRVFKTVNRRAQIFPMADDYTDSLITKKQVSVWCSNDYLGM 258

Query: 66  SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
           S HP+V  AV E +++ G GAGGTRNISG S FH +LE+++A LH K+A L+F+SC+VAN
Sbjct: 259 SRHPRVCGAVIETVKQHGAGAGGTRNISGTSKFHVELEQELADLHGKDAALLFSSCFVAN 318

Query: 126 DSTLFTLGKMIP 137
           DSTLFTL KM+P
Sbjct: 319 DSTLFTLAKMMP 330

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q3ZC31|HEM0_BOVIN 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Bos taurus GN=ALAS2 PE=2 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 105/132 (79%), Gaps = 3/132 (2%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAA---YEYTDSEKEVTVYCSNDYLGM 65
           F Y+ FF ++IM+KK+DH+YRVFK VNR A  +P A   +E + + K+V+V+CSNDYLGM
Sbjct: 143 FGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVASKDVSVWCSNDYLGM 202

Query: 66  SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
           S HP+V  A +E L++ G GAGGTRNISG S FH +LE+++A LHQK++ L+F+SC+VAN
Sbjct: 203 SRHPRVLQATQEILQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVAN 262

Query: 126 DSTLFTLGKMIP 137
           DSTLFTL K++P
Sbjct: 263 DSTLFTLAKILP 274

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XT75|HEM0_DELLE 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Delphinapterus leucas GN=ALAS2 PE=2 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 104/132 (78%), Gaps = 3/132 (2%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAA---YEYTDSEKEVTVYCSNDYLGM 65
           F Y+ FF  +IM+KK+DH+YRVFK VNR A  +P A   +E + + K+V+V+CSNDYLGM
Sbjct: 138 FGYDQFFRNKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVASKDVSVWCSNDYLGM 197

Query: 66  SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
           S HP+V  A +E L++ G GAGGTRNISG S FH +LE+++A LHQK++ L+F+SC+VAN
Sbjct: 198 SRHPRVLQATQETLQRHGAGAGGTRNISGTSRFHVELEQELAELHQKDSALLFSSCFVAN 257

Query: 126 DSTLFTLGKMIP 137
           DSTLFTL K++P
Sbjct: 258 DSTLFTLAKILP 269

Delphinapterus leucas (taxid: 9749)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
193636587	535	PREDICTED: 5-aminolevulinate synthase, e	0.741	0.241	0.759	4e-55
307207088	509	5-aminolevulinate synthase, erythroid-sp	0.741	0.253	0.759	5e-55
66565732	507	PREDICTED: 5-aminolevulinate synthase, e	0.793	0.272	0.717	1e-54
380022267	507	PREDICTED: 5-aminolevulinate synthase, e	0.793	0.272	0.710	4e-54
383865030	509	PREDICTED: 5-aminolevulinate synthase, e	0.752	0.257	0.75	8e-54
322803113	568	hypothetical protein SINV_14504 [Solenop	0.741	0.227	0.751	1e-53
332023598	510	5-aminolevulinate synthase, erythroid-sp	0.741	0.252	0.751	3e-53
350419027	532	PREDICTED: 5-aminolevulinate synthase, e	0.793	0.259	0.695	5e-53
242012831	542	5-aminolevulinate synthase, nonspecific,	0.781	0.250	0.705	5e-53
340708929	532	PREDICTED: 5-aminolevulinate synthase, e	0.793	0.259	0.695	5e-53

>gi|193636587|ref|XP_001944044.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like [Acyrthosiphon pisum]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 116/129 (89%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCH 68
           + YE FFHEQIM+KK DHSYR+F+KVNRLA +FP A EYT +EK VTV+CSNDYLGMSCH
Sbjct: 89  YNYEKFFHEQIMRKKADHSYRIFRKVNRLAMDFPYAVEYTGNEKPVTVWCSNDYLGMSCH 148

Query: 69  PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
           P+VKSAV+  L+K+G+GAGGTRNISGNS+FHE LE+D+A LH+KEA L+FTSC+VANDST
Sbjct: 149 PEVKSAVQRTLDKYGSGAGGTRNISGNSMFHENLEKDLAVLHEKEAALLFTSCFVANDST 208

Query: 129 LFTLGKMIP 137
           LFTLGKMIP
Sbjct: 209 LFTLGKMIP 217

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207088|gb|EFN84897.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial [Harpegnathos saltator]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 116/129 (89%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCH 68
           FPYE+FFHEQIM+KKRDHSYRVFKKVNRLA NFPAA EY+  EK +TV+CSNDYLGMS H
Sbjct: 93  FPYEEFFHEQIMRKKRDHSYRVFKKVNRLAENFPAAMEYSWGEKPITVWCSNDYLGMSRH 152

Query: 69  PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
           P V +AVR+AL+KFG GAGGTRNISGNS+ HE LE+ +A+LHQK+AGL+FTSC+VANDST
Sbjct: 153 PAVTNAVRKALDKFGAGAGGTRNISGNSMGHEMLEKRLAKLHQKDAGLLFTSCFVANDST 212

Query: 129 LFTLGKMIP 137
           LFTL +++P
Sbjct: 213 LFTLARILP 221

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66565732|ref|XP_624475.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like [Apis mellifera]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 119/138 (86%)

Query: 1   MDTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSN 60
           +++  +  FPYE+FFHEQIMKKK+DHSYRVFKKVNRLA NFP A EY+  EK +TV+CSN
Sbjct: 83  IESKEKASFPYEEFFHEQIMKKKKDHSYRVFKKVNRLAENFPTAIEYSWGEKPITVWCSN 142

Query: 61  DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTS 120
           DYLGMS HP V  +VREAL+KFGTGAGGTRNISGNS+ HE LE+ +A LHQKEAGL+FTS
Sbjct: 143 DYLGMSRHPTVIHSVREALDKFGTGAGGTRNISGNSMGHEILEKRLASLHQKEAGLLFTS 202

Query: 121 CYVANDSTLFTLGKMIPY 138
           C+VANDSTL+TL K++P+
Sbjct: 203 CFVANDSTLYTLAKLLPH 220

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022267|ref|XP_003694972.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like [Apis florea]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/138 (71%), Positives = 119/138 (86%)

Query: 1   MDTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSN 60
           +++  +  FPYE+FFHEQIMKKK+DHSYRVFKKVNRLA NFP A EY+  EK +TV+CSN
Sbjct: 83  IESKEKASFPYEEFFHEQIMKKKKDHSYRVFKKVNRLAENFPTAIEYSWGEKPITVWCSN 142

Query: 61  DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTS 120
           DYLGMS HP V  +VR+AL+KFGTGAGGTRNISGNS+ HE LE+ +A LHQKEAGL+FTS
Sbjct: 143 DYLGMSRHPTVIHSVRKALDKFGTGAGGTRNISGNSMGHEILEKRLASLHQKEAGLLFTS 202

Query: 121 CYVANDSTLFTLGKMIPY 138
           C+VANDSTL+TL K++P+
Sbjct: 203 CFVANDSTLYTLAKLLPH 220

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865030|ref|XP_003707979.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like [Megachile rotundata]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 99/132 (75%), Positives = 115/132 (87%), Gaps = 1/132 (0%)

Query: 7   EP-FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGM 65
           EP FPYE+FFHEQIMKKK+DHSYRVFKKVNRLA NFP A EY+  EK +TV+CSNDYLGM
Sbjct: 88  EPSFPYEEFFHEQIMKKKKDHSYRVFKKVNRLAENFPTAVEYSWGEKPITVWCSNDYLGM 147

Query: 66  SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
           S HP V  +VR+AL+KFG GAGGTRNISGNS+ HE LE+ +A LHQKEAGL+FTSC+VAN
Sbjct: 148 SRHPAVIDSVRQALDKFGAGAGGTRNISGNSMGHEMLEKRLAALHQKEAGLLFTSCFVAN 207

Query: 126 DSTLFTLGKMIP 137
           DSTL+TL K++P
Sbjct: 208 DSTLYTLAKLLP 219

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322803113|gb|EFZ23201.1| hypothetical protein SINV_14504 [Solenopsis invicta]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/129 (75%), Positives = 111/129 (86%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCH 68
           FPYE+FFHEQIMKKK+DHSYRVFKKVNRLA +FP A EY+  EK +TV+CSNDYLGMS H
Sbjct: 153 FPYEEFFHEQIMKKKKDHSYRVFKKVNRLAEDFPVAMEYSWGEKSITVWCSNDYLGMSRH 212

Query: 69  PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
           P V  A REAL+KFG GAGGTRNISGNS+ HE LE  +A LHQKEAGL+FTSC+VANDST
Sbjct: 213 PAVTGAAREALDKFGAGAGGTRNISGNSMGHEMLERRLAMLHQKEAGLLFTSCFVANDST 272

Query: 129 LFTLGKMIP 137
           LFTL +++P
Sbjct: 273 LFTLARILP 281

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023598|gb|EGI63831.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial [Acromyrmex echinatior]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/129 (75%), Positives = 112/129 (86%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCH 68
           FPYE+FFHEQ+M+KK+DHSYRVFKKVNRLA NFP A EY+  EK +TV+CSNDYLGMS H
Sbjct: 94  FPYEEFFHEQLMRKKKDHSYRVFKKVNRLAENFPVAMEYSWGEKPITVWCSNDYLGMSRH 153

Query: 69  PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
           P V SAVREAL KFG GAGGTRNISGNS+ HE LE+ +A LHQK+AGL+FTSC+VANDST
Sbjct: 154 PAVISAVREALNKFGAGAGGTRNISGNSMGHELLEKRLALLHQKDAGLLFTSCFVANDST 213

Query: 129 LFTLGKMIP 137
           LFTL  ++P
Sbjct: 214 LFTLATILP 222

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419027|ref|XP_003492046.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like [Bombus impatiens]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 117/138 (84%)

Query: 1   MDTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSN 60
           +++  +  FPYE+FFHEQIMKKK+DHSYRVFKKVNRLA +FP   EY+  EK +TV+CSN
Sbjct: 108 LESKEKGSFPYEEFFHEQIMKKKKDHSYRVFKKVNRLAESFPIGIEYSWGEKPITVWCSN 167

Query: 61  DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTS 120
           DYLGMS HP V ++VREAL KFG GAGGTRNISGNS+ HE LE+ +A LHQKEAGL+FTS
Sbjct: 168 DYLGMSRHPAVTNSVREALNKFGAGAGGTRNISGNSIGHEILEKRLASLHQKEAGLLFTS 227

Query: 121 CYVANDSTLFTLGKMIPY 138
           C+VANDSTL+TL K++P+
Sbjct: 228 CFVANDSTLYTLAKLLPH 245

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012831|ref|XP_002427130.1| 5-aminolevulinate synthase, nonspecific, putative [Pediculus humanus corporis] gi|212511401|gb|EEB14392.1| 5-aminolevulinate synthase, nonspecific, putative [Pediculus humanus corporis]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 117/136 (86%)

Query: 2   DTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSND 61
           + +++  F YE FFH QI+KKK+DHSYRVFKKVNRLA +FP+A EYT  +K VTV+CSND
Sbjct: 82  EISIKSSFDYEQFFHSQILKKKQDHSYRVFKKVNRLAQSFPSALEYTGKKKTVTVWCSND 141

Query: 62  YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSC 121
           YLGMS HP+V +AV++ALE  GTGAGGTRNISGNSLFHE LEE+++RLHQKE+ L+FTSC
Sbjct: 142 YLGMSRHPQVIAAVKKALENHGTGAGGTRNISGNSLFHENLEEEISRLHQKESALLFTSC 201

Query: 122 YVANDSTLFTLGKMIP 137
           +VANDSTLFTL K +P
Sbjct: 202 FVANDSTLFTLAKALP 217

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708929|ref|XP_003393069.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like [Bombus terrestris]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 117/138 (84%)

Query: 1   MDTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSN 60
           +++  +  FPYE+FFHEQIMKKK+DHSYRVFKKVNRLA +FP   EY+  EK +TV+CSN
Sbjct: 108 LESKEKGSFPYEEFFHEQIMKKKKDHSYRVFKKVNRLAESFPIGIEYSWGEKPITVWCSN 167

Query: 61  DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTS 120
           DYLGMS HP V ++VREAL KFG GAGGTRNISGNS+ HE LE+ +A LHQKEAGL+FTS
Sbjct: 168 DYLGMSRHPAVTNSVREALNKFGAGAGGTRNISGNSVGHEILEKRLASLHQKEAGLLFTS 227

Query: 121 CYVANDSTLFTLGKMIPY 138
           C+VANDSTL+TL K++P+
Sbjct: 228 CFVANDSTLYTLAKLLPH 245

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
FB|FBgn0020764	539	Alas "Aminolevulinate synthase	0.758	0.244	0.718	2.3e-48
UNIPROTKB|P43090	582	alas2 "5-aminolevulinate synth	0.781	0.233	0.604	1.1e-41
ZFIN|ZDB-GENE-001229-1	583	alas2 "aminolevulinate, delta-	0.781	0.233	0.575	6.8e-40
UNIPROTKB|E1C5T4	594	E1C5T4 "Uncharacterized protei	0.741	0.217	0.613	2.3e-39
UNIPROTKB|E1C3L6	606	E1C3L6 "Uncharacterized protei	0.741	0.212	0.613	2.5e-39
UNIPROTKB|F1P796	538	ALAS2 "Uncharacterized protein	0.741	0.239	0.583	2.9e-39
ZFIN|ZDB-GENE-001229-2	613	alas1 "aminolevulinate, delta-	0.741	0.210	0.606	3e-39
UNIPROTKB|P22557	587	ALAS2 "5-aminolevulinate synth	0.741	0.219	0.575	3.7e-39
UNIPROTKB|Q5JZF5	574	ALAS2 "Aminolevulinate, delta-	0.741	0.224	0.575	3.7e-39
UNIPROTKB|P07997	635	ALAS1 "5-aminolevulinate synth	0.741	0.203	0.613	4.5e-39

FB|FBgn0020764 Alas "Aminolevulinate synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 97/135 (71%), Positives = 115/135 (85%)

Query:     6 REPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATN--FPAAYEYTD-SEKEVTVYCSNDY 62
             +E FPYE FF+EQIMKKKRDHSYRVFKKVNRLA +  FP A EY++ +EK +TV+CSNDY
Sbjct:    90 KETFPYERFFNEQIMKKKRDHSYRVFKKVNRLAGDGLFPHALEYSERTEKPITVWCSNDY 149

Query:    63 LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCY 122
             LGMS HP VK AV++AL + G+GAGGTRNISGNSL HE+LE  +A LHQKEA L+FTSC+
Sbjct:   150 LGMSAHPGVKRAVQDALNRHGSGAGGTRNISGNSLHHERLESKLAELHQKEAALLFTSCF 209

Query:   123 VANDSTLFTLGKMIP 137
             VANDSTLFTL K++P
Sbjct:   210 VANDSTLFTLAKLLP 224

GO:0003870 "5-aminolevulinate synthase activity" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=RCA

GO:0006783 "heme biosynthetic process" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0040003 "chitin-based cuticle development" evidence=IMP

UNIPROTKB|P43090 alas2 "5-aminolevulinate synthase, erythroid-specific, mitochondrial" [Opsanus tau (taxid:8068)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 84/139 (60%), Positives = 109/139 (78%)

Query:     2 DTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKE---VTVYC 58
             D  +   F Y++FF+E+I +KKRDH+YRVFK VNR A  FP A +Y+ S+++   V+V+C
Sbjct:   131 DNMVGPSFDYDNFFNEKIAEKKRDHTYRVFKTVNRNAVVFPFAEDYSVSDRQGSQVSVWC 190

Query:    59 SNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVF 118
             SNDYLGMS HP+V  A+RE LE+ G GAGGTRNISG S +H  LE+++A LHQK+A LVF
Sbjct:   191 SNDYLGMSRHPRVLEAIREVLERHGAGAGGTRNISGTSKYHVTLEKELAHLHQKDAALVF 250

Query:   119 TSCYVANDSTLFTLGKMIP 137
             +SC+VANDSTLFTL KM+P
Sbjct:   251 SSCFVANDSTLFTLAKMLP 269

GO:0001666 "response to hypoxia" evidence=ISS

GO:0003870 "5-aminolevulinate synthase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

ZFIN|ZDB-GENE-001229-1 alas2 "aminolevulinate, delta-, synthetase 2" [Danio rerio (taxid:7955)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 80/139 (57%), Positives = 107/139 (76%)

Query:     2 DTTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEK---EVTVYC 58
             D   R  F Y++FF ++I++KK+DH+YR+FK VNR A  FP A +Y+ + +   +V+V+C
Sbjct:   131 DNFNRPTFSYDEFFTQKIVEKKKDHTYRIFKTVNRFAEVFPFAEDYSIAGRLGSQVSVWC 190

Query:    59 SNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVF 118
             SNDYLGMS HP+V  A+ +AL+K G GAGGTRNISG S +H  LE ++ARLHQK+  LVF
Sbjct:   191 SNDYLGMSRHPRVVKAIGDALKKHGAGAGGTRNISGTSNYHVALENELARLHQKDGALVF 250

Query:   119 TSCYVANDSTLFTLGKMIP 137
             +SC+VANDSTLFTL KM+P
Sbjct:   251 SSCFVANDSTLFTLAKMLP 269

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA;ISS

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0020027 "hemoglobin metabolic process" evidence=IMP

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0006783 "heme biosynthetic process" evidence=IEA;ISS;IMP

GO:0042541 "hemoglobin biosynthetic process" evidence=ISS

GO:0001666 "response to hypoxia" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0030218 "erythrocyte differentiation" evidence=ISS

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1C5T4 E1C5T4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 81/132 (61%), Positives = 104/132 (78%)

Query:     9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS---EKEVTVYCSNDYLGM 65
             F Y+ FF ++I +KK+DH+YRVFK VNR A  FP A +Y+DS   +KEV+V+CSNDYLGM
Sbjct:   192 FQYDQFFEKKIDEKKKDHTYRVFKTVNRKAQIFPMADDYSDSLITKKEVSVWCSNDYLGM 251

Query:    66 SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
             S HP+V  AV + L++ G GAGGTRNISG S FH  LE+++A LH K+A L+F+SC+VAN
Sbjct:   252 SRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEKELADLHGKDAALLFSSCFVAN 311

Query:   126 DSTLFTLGKMIP 137
             DSTLFTL KM+P
Sbjct:   312 DSTLFTLAKMLP 323

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|E1C3L6 E1C3L6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 420 (152.9 bits), Expect = 2.5e-39, P = 2.5e-39
 Identities = 81/132 (61%), Positives = 104/132 (78%)

Query:     9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS---EKEVTVYCSNDYLGM 65
             F Y+ FF ++I +KK+DH+YRVFK VNR A  FP A +Y+DS   +KEV+V+CSNDYLGM
Sbjct:   192 FQYDQFFEKKIDEKKKDHTYRVFKTVNRKAQIFPMADDYSDSLITKKEVSVWCSNDYLGM 251

Query:    66 SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
             S HP+V  AV + L++ G GAGGTRNISG S FH  LE+++A LH K+A L+F+SC+VAN
Sbjct:   252 SRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEKELADLHGKDAALLFSSCFVAN 311

Query:   126 DSTLFTLGKMIP 137
             DSTLFTL KM+P
Sbjct:   312 DSTLFTLAKMLP 323

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P796 ALAS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 77/132 (58%), Positives = 104/132 (78%)

Query:     9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSE---KEVTVYCSNDYLGM 65
             F Y+ FF  +IM+KK+DH+YRVFK VNR A  +P A  ++++    K+V+V+CSNDYLGM
Sbjct:    94 FGYDQFFRHKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASMASKDVSVWCSNDYLGM 153

Query:    66 SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
             S HP+V  A +E L++ G GAGGTRNISG S FH +LE+++A LHQK+A L+F+SC+VAN
Sbjct:   154 SRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDAALLFSSCFVAN 213

Query:   126 DSTLFTLGKMIP 137
             DSTLFTL K++P
Sbjct:   214 DSTLFTLAKILP 225

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

ZFIN|ZDB-GENE-001229-2 alas1 "aminolevulinate, delta-, synthetase 1" [Danio rerio (taxid:7955)]

 Score = 420 (152.9 bits), Expect = 3.0e-39, P = 3.0e-39
 Identities = 80/132 (60%), Positives = 102/132 (77%)

Query:     9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS---EKEVTVYCSNDYLGM 65
             F Y++FF ++I +KK DH+YRVFK VNR AT FP A +YT+S   ++ V+V+CSNDYLGM
Sbjct:   170 FRYDEFFEKKIEEKKSDHTYRVFKTVNRRATEFPMADDYTESLSFKRNVSVWCSNDYLGM 229

Query:    66 SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
             S HP+V   + + L K G+GAGGTRNISG S FH  LE ++A LH K+A L+FTSC+VAN
Sbjct:   230 SRHPRVVQTIMDTLGKHGSGAGGTRNISGTSKFHVDLEHELADLHGKDAALLFTSCFVAN 289

Query:   126 DSTLFTLGKMIP 137
             DSTLFTL KM+P
Sbjct:   290 DSTLFTLAKMMP 301

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|P22557 ALAS2 "5-aminolevulinate synthase, erythroid-specific, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 76/132 (57%), Positives = 105/132 (79%)

Query:     9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSE---KEVTVYCSNDYLGM 65
             F Y+ FF ++IM+KK+DH+YRVFK VNR A  +P A  ++++    K+V+V+CSNDYLGM
Sbjct:   143 FSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSNDYLGM 202

Query:    66 SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
             S HP+V  A +E L++ G GAGGTRNISG S FH +LE+++A LHQK++ L+F+SC+VAN
Sbjct:   203 SRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVAN 262

Query:   126 DSTLFTLGKMIP 137
             DSTLFTL K++P
Sbjct:   263 DSTLFTLAKILP 274

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=ISS;NAS

GO:0003870 "5-aminolevulinate synthase activity" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006783 "heme biosynthetic process" evidence=ISS;NAS;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042541 "hemoglobin biosynthetic process" evidence=ISS

GO:0001666 "response to hypoxia" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=ISS

GO:0016594 "glycine binding" evidence=ISS

GO:0032364 "oxygen homeostasis" evidence=NAS

GO:0050662 "coenzyme binding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006778 "porphyrin-containing compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5JZF5 ALAS2 "Aminolevulinate, delta-, synthase 2 (Sideroblastic/hypochromic anemia), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 76/132 (57%), Positives = 105/132 (79%)

Query:     9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSE---KEVTVYCSNDYLGM 65
             F Y+ FF ++IM+KK+DH+YRVFK VNR A  +P A  ++++    K+V+V+CSNDYLGM
Sbjct:   130 FSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSNDYLGM 189

Query:    66 SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
             S HP+V  A +E L++ G GAGGTRNISG S FH +LE+++A LHQK++ L+F+SC+VAN
Sbjct:   190 SRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVAN 249

Query:   126 DSTLFTLGKMIP 137
             DSTLFTL K++P
Sbjct:   250 DSTLFTLAKILP 261

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

UNIPROTKB|P07997 ALAS1 "5-aminolevulinate synthase, nonspecific, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 420 (152.9 bits), Expect = 4.5e-39, P = 4.5e-39
 Identities = 81/132 (61%), Positives = 104/132 (78%)

Query:     9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS---EKEVTVYCSNDYLGM 65
             F Y+ FF ++I +KK+DH+YRVFK VNR A  FP A +Y+DS   +KEV+V+CSNDYLGM
Sbjct:   192 FQYDQFFEKKIDEKKKDHTYRVFKTVNRKAQIFPMADDYSDSLITKKEVSVWCSNDYLGM 251

Query:    66 SCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN 125
             S HP+V  AV + L++ G GAGGTRNISG S FH  LE+++A LH K+A L+F+SC+VAN
Sbjct:   252 SRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEKELADLHGKDAALLFSSCFVAN 311

Query:   126 DSTLFTLGKMIP 137
             DSTLFTL KM+P
Sbjct:   312 DSTLFTLAKMLP 323

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003870 "5-aminolevulinate synthase activity" evidence=IEA

GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006783 "heme biosynthetic process" evidence=TAS

GO:0042168 "heme metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A6QLI6	HEM1_BOVIN	2, ., 3, ., 1, ., 3, 7	0.6212	0.7413	0.1993	yes	N/A
Q8VC19	HEM1_MOUSE	2, ., 3, ., 1, ., 3, 7	0.6136	0.7413	0.2009	yes	N/A
P38092	HEM1_EMENI	2, ., 3, ., 1, ., 3, 7	0.5230	0.7413	0.1990	yes	N/A
P07997	HEM1_CHICK	2, ., 3, ., 1, ., 3, 7	0.6136	0.7413	0.2031	yes	N/A
Q5R557	HEM0_PONAB	2, ., 3, ., 1, ., 3, 7	0.5757	0.7413	0.2197	yes	N/A
Q6CCW0	HEM1_YARLI	2, ., 3, ., 1, ., 3, 7	0.5220	0.7643	0.2362	yes	N/A
Q04512	HEM1_RHOS4	2, ., 3, ., 1, ., 3, 7	0.5535	0.6321	0.2702	yes	N/A
O14092	HEM1_SCHPO	2, ., 3, ., 1, ., 3, 7	0.5116	0.7356	0.2293	yes	N/A
Q9YHT4	HEM0_DANRE	2, ., 3, ., 1, ., 3, 7	0.5755	0.7816	0.2332	yes	N/A
P13195	HEM1_RAT	2, ., 3, ., 1, ., 3, 7	0.6136	0.7413	0.2009	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	174
TIGR01821	402	TIGR01821, 5aminolev_synth, 5-aminolevulinic acid	5e-59
PRK09064	407	PRK09064, PRK09064, 5-aminolevulinate synthase; Va	6e-55
PRK13393	406	PRK13393, PRK13393, 5-aminolevulinate synthase; Pr	2e-50
PRK13392	410	PRK13392, PRK13392, 5-aminolevulinate synthase; Pr	3e-45
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	6e-39
COG0156	388	COG0156, BioF, 7-keto-8-aminopelargonate synthetas	3e-37
TIGR00858	360	TIGR00858, bioF, 8-amino-7-oxononanoate synthase	6e-26
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	3e-24
TIGR01825	385	TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-depe	1e-16
PRK06939	397	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym	5e-16
TIGR01822	393	TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co	2e-14
PLN02955	476	PLN02955, PLN02955, 8-amino-7-oxononanoate synthas	6e-11
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	4e-08
PLN02483	489	PLN02483, PLN02483, serine palmitoyltransferase	6e-07
PLN02822	481	PLN02822, PLN02822, serine palmitoyltransferase	3e-06
PRK05937	370	PRK05937, PRK05937, 8-amino-7-oxononanoate synthas	4e-06
PLN03227	392	PLN03227, PLN03227, serine palmitoyltransferase-li	3e-05
PRK07505	402	PRK07505, PRK07505, hypothetical protein; Provisio	9e-05

>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase

 Score =  188 bits (479), Expect = 5e-59
 Identities = 70/130 (53%), Positives = 91/130 (70%), Gaps = 1/130 (0%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFP-AAYEYTDSEKEVTVYCSNDYLGMSC 67
             Y+ FF+++I K   +  YRVF  + R A  FP A +   D  K+VTV+CSNDYLGM  
Sbjct: 1   MDYDQFFNKEIDKLHLEGRYRVFADLERQAGEFPFAQWHRPDGAKDVTVWCSNDYLGMGQ 60

Query: 68  HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDS 127
           HP+V  A+ E L+K+G GAGGTRNISG ++ H +LE ++A LH KE+ LVFTS YVAND+
Sbjct: 61  HPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDA 120

Query: 128 TLFTLGKMIP 137
           TL TL K+IP
Sbjct: 121 TLATLAKIIP 130

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 402

>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated

 Score =  178 bits (453), Expect = 6e-55
 Identities = 71/130 (54%), Positives = 89/130 (68%), Gaps = 2/130 (1%)

Query: 10  PYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD--SEKEVTVYCSNDYLGMSC 67
            YE FF   + + K +  YRVF  + R+A  FP A        E+EVTV+CSNDYLGM  
Sbjct: 2   DYEAFFENALDRLKAEGRYRVFADLERIAGRFPYATWRRPDGGEREVTVWCSNDYLGMGQ 61

Query: 68  HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDS 127
           HPKV  A+ EAL++ G GAGGTRNISG + +H +LE ++A LH KEA LVFTS YV+ND+
Sbjct: 62  HPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDA 121

Query: 128 TLFTLGKMIP 137
           TL TL K+IP
Sbjct: 122 TLSTLAKLIP 131

Length = 407

>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional

 Score =  166 bits (422), Expect = 2e-50
 Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 1/130 (0%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFP-AAYEYTDSEKEVTVYCSNDYLGMSC 67
             YE +F  Q+   +R+  YRVF  + R A  FP A +   D  +EVTV+CSNDYLGM  
Sbjct: 1   MNYEQYFQRQLDGLRREGRYRVFADLERQAGAFPRATHHGPDGPREVTVWCSNDYLGMGQ 60

Query: 68  HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDS 127
           HP V +A+ EAL+  G GAGGTRNISG + +H  LE ++A LH KEA L+FTS YV+N +
Sbjct: 61  HPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWA 120

Query: 128 TLFTLGKMIP 137
            L TLG  +P
Sbjct: 121 ALSTLGSRLP 130

Length = 406

>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional

 Score =  153 bits (387), Expect = 3e-45
 Identities = 62/130 (47%), Positives = 85/130 (65%), Gaps = 1/130 (0%)

Query: 9   FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAA-YEYTDSEKEVTVYCSNDYLGMSC 67
             Y+ +F   + +  ++  YRVF  + R A  FP A     D  + VT++CSNDYLGM  
Sbjct: 2   MNYDSYFDAALAQLHQEGRYRVFADLEREAGRFPRARDHGPDGPRRVTIWCSNDYLGMGQ 61

Query: 68  HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDS 127
           HP V  A+ +AL+++G GAGGTRNISG S  H  LE ++A LH KE+ L+FTS YV+ND+
Sbjct: 62  HPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDA 121

Query: 128 TLFTLGKMIP 137
            L TLGK++P
Sbjct: 122 ALSTLGKLLP 131

Length = 410

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score =  134 bits (341), Expect = 6e-39
 Identities = 48/83 (57%), Positives = 61/83 (73%)

Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K+V  +CSNDYLG++ HP+V  A +EAL+K+G GAGG+R ISG S  HE+LEE++A  H 
Sbjct: 1   KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG 60

Query: 112 KEAGLVFTSCYVANDSTLFTLGK 134
           KEA LVF+S Y AND  L TL  
Sbjct: 61  KEAALVFSSGYAANDGVLSTLAG 83

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

 Score =  131 bits (332), Expect = 3e-37
 Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 5/124 (4%)

Query: 11  YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPK 70
           +  F  + +   K +  YR  + ++R               ++V  +CSNDYLG++ HP+
Sbjct: 3   FLSFLRQALQALKAEGLYRGLRALDR-----RQGLAIRADGRKVLNFCSNDYLGLASHPE 57

Query: 71  VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF 130
           +  A + A+ ++G GAGG+R ISG S  H +LEE++A     EA L+F+S +VAN   L 
Sbjct: 58  LIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLS 117

Query: 131 TLGK 134
            L K
Sbjct: 118 ALLK 121

Length = 388

>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase

 Score =  101 bits (253), Expect = 6e-26
 Identities = 33/82 (40%), Positives = 53/82 (64%)

Query: 51  EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH 110
            + +  + SNDYLG++ HP+V  A ++  E++G G+  +R +SGNS  HE+LEE++A   
Sbjct: 15  GRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWK 74

Query: 111 QKEAGLVFTSCYVANDSTLFTL 132
             EA L+F+S Y+AN   +  L
Sbjct: 75  GTEAALLFSSGYLANVGVISAL 96

7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score = 96.8 bits (242), Expect = 3e-24
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 23  KRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKF 82
           +    YR      R        +   D  + +  + SNDYLG++ HP++ +A ++A  ++
Sbjct: 15  RAAGLYRSL----RPREGGAGRWLVVDGRRMLN-FASNDYLGLARHPRLIAAAQQAARRY 69

Query: 83  GTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL 132
           G G+GG+R ++GNS  HE LEE++A     E  L+F+S Y AN + L  L
Sbjct: 70  GAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTAL 119

Length = 385

>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 34/78 (43%), Positives = 49/78 (62%)

Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           KEV    SN+YLG + HP++K A  +A++++G GAG  R I+G    HE+LEE +A+  +
Sbjct: 33  KEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK 92

Query: 112 KEAGLVFTSCYVANDSTL 129
            EA LVF S +  N   L
Sbjct: 93  TEAALVFQSGFNTNQGVL 110

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385

>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

 Score = 74.1 bits (183), Expect = 5e-16
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           KEV  +C+N+YLG++ HP++ +A + AL+  G G    R I G    H++LEE +A+   
Sbjct: 42  KEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG 101

Query: 112 KEAGLVFTSCYVAND---STLFT 131
            E  ++++SC+ AN     TL  
Sbjct: 102 TEDAILYSSCFDANGGLFETLLG 124

Length = 397

>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 27/74 (36%), Positives = 44/74 (59%)

Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           +EV  +C+N+YLG+S HP +  A ++AL++ G G    R I G    H++LE  +A    
Sbjct: 38  REVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLG 97

Query: 112 KEAGLVFTSCYVAN 125
            E  +++ SC+ AN
Sbjct: 98  TEDTILYASCFDAN 111

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393

>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase

 Score = 59.3 bits (143), Expect = 6e-11
 Identities = 28/84 (33%), Positives = 49/84 (58%)

Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K++ ++  NDYLG+S HP + +A   A +++G G  G+  I G + +H  LE  +A L +
Sbjct: 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK 161

Query: 112 KEAGLVFTSCYVANDSTLFTLGKM 135
           KE  LV  + + AN + +  +G +
Sbjct: 162 KEDCLVCPTGFAANMAAMVAIGSV 185

Length = 476

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH- 110
            +     SN+YLG S    + +  +   +     AGGTRN+ G +    +L E +A+   
Sbjct: 1   TDKINLGSNEYLGDS--GTLPAVAKAEKD---ALAGGTRNLYGPTDGLPELREALAKFLG 55

Query: 111 -------QKEAGLVFTSCYVANDSTLFTLGKMIP 137
                   +EA +VF S   AN   L  L ++ P
Sbjct: 56  RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNP 89

Length = 357

>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 59  SNDYLGMS-----CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE 113
           S +YLG +     C P+V     E+L+K+      +R   G +  H +LEE VAR   K 
Sbjct: 107 SYNYLGFAAADEYCTPRVI----ESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKP 162

Query: 114 AGLVFTSCYVANDSTLFTL 132
           A +VF   Y  N + +  L
Sbjct: 163 AAIVFGMGYATNSTIIPAL 181

Length = 489

>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K+V  + S +YLG+  + K+K +   ALEK+G G+ G R   G    H   E  +A+   
Sbjct: 109 KDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG 168

Query: 112 KEAGLVFTSCYVANDSTLFTLGKMIPYF 139
               ++    Y    ST+F++   IP F
Sbjct: 169 TPDSIL----YSYGLSTIFSV---IPAF 189

Length = 481

>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 57  YCSNDYLGMSCHPKVKSAV----REALEKFG---TGAGGTRNISGNSLFHEKLEEDVARL 109
           + +ND+LG S    +   V    R    +F     G GG+R I G S   + LE  +A  
Sbjct: 9   FVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHF 68

Query: 110 HQKEAGLVFTSCYVAN 125
           H      +  S Y+AN
Sbjct: 69  HGAPEAFIVPSGYMAN 84

Length = 370

>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein; Provisional

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 19/79 (24%), Positives = 37/79 (46%)

Query: 56  VYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAG 115
            + ++D+L  S  P ++    E+L  +G G+ G R   G    H +LE+ +A     E+ 
Sbjct: 2   NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESA 61

Query: 116 LVFTSCYVANDSTLFTLGK 134
           ++++       ST+    K
Sbjct: 62  ILYSDGASTTSSTVAAFAK 80

Length = 392

>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 27/121 (22%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 26  HSYRVFKKVNRLA------------TNFPAA-----YEYTDSEKEVTVYCSNDYLGMSCH 68
           H YR  KK    A                                   + S  YLG+  H
Sbjct: 3   HKYRNNKKRINRAEKFWDAAYDEGLNGLTVGEREGILITLADGHTFVNFVSCSYLGLDTH 62

Query: 69  PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
           P +     +AL++ G+    +      S   + LEE ++ L      L FTSC  A+   
Sbjct: 63  PAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGASV-LTFTSCSAAHLGI 121

Query: 129 L 129
           L
Sbjct: 122 L 122

Length = 402

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	100.0
KOG1360|consensus	570		100.0
PLN02955	476	8-amino-7-oxononanoate synthase	100.0
KOG1357|consensus	519		99.97
PLN02483	489	serine palmitoyltransferase	99.96
PRK13393	406	5-aminolevulinate synthase; Provisional	99.95
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.95
KOG1359|consensus	417		99.95
PRK09064	407	5-aminolevulinate synthase; Validated	99.95
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.92
PRK13392	410	5-aminolevulinate synthase; Provisional	99.92
KOG1358|consensus	467		99.92
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.9
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.9
PLN02822	481	serine palmitoyltransferase	99.89
PRK07179	407	hypothetical protein; Provisional	99.85
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.73
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.67
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.67
PRK07505	402	hypothetical protein; Provisional	99.63
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.61
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.59
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.57
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.5
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.38
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.34
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.31
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.26
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.24
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.16
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.14
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.13
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.03
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.03
PRK01278	389	argD acetylornithine transaminase protein; Provisi	98.98
PTZ00125	400	ornithine aminotransferase-like protein; Provision	98.97
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	98.82
PRK03244	398	argD acetylornithine aminotransferase; Provisional	98.81
PLN02624	474	ornithine-delta-aminotransferase	98.78
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	98.71
PRK12403	460	putative aminotransferase; Provisional	98.55
PRK02627	396	acetylornithine aminotransferase; Provisional	98.54
PRK04260	375	acetylornithine aminotransferase; Provisional	98.54
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	98.53
PRK03715	395	argD acetylornithine transaminase protein; Provisi	98.51
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	98.5
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	98.49
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	98.48
PLN02760	504	4-aminobutyrate:pyruvate transaminase	98.44
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	98.39
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	98.32
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	98.3
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	98.18
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	98.17
PTZ00094	452	serine hydroxymethyltransferase; Provisional	98.11
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.9
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	97.89
PLN02721	353	threonine aldolase	97.87
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	97.86
PRK06149	972	hypothetical protein; Provisional	97.86
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	97.75
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	97.71
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	97.66
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	97.64
PRK04311	464	selenocysteine synthase; Provisional	97.56
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	97.54
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	97.54
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	97.54
PLN02242	418	methionine gamma-lyase	97.5
PRK10534	333	L-threonine aldolase; Provisional	97.48
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	97.47
PRK08114	395	cystathionine beta-lyase; Provisional	97.45
PRK06234	400	methionine gamma-lyase; Provisional	97.38
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	97.37
PRK02731	367	histidinol-phosphate aminotransferase; Validated	97.36
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	97.34
PRK05939	397	hypothetical protein; Provisional	97.33
PRK08574	385	cystathionine gamma-synthase; Provisional	97.31
PRK08249	398	cystathionine gamma-synthase; Provisional	97.3
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	97.28
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	97.25
PRK13520	371	L-tyrosine decarboxylase; Provisional	97.24
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	97.22
PRK05968	389	hypothetical protein; Provisional	97.2
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	97.18
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	97.14
PLN00144	382	acetylornithine transaminase	97.1
PRK06767	386	methionine gamma-lyase; Provisional	97.1
PRK06105	460	aminotransferase; Provisional	97.06
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	97.05
KOG1368|consensus	384		97.01
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	96.98
PRK02948	381	cysteine desulfurase; Provisional	96.96
PRK00950	361	histidinol-phosphate aminotransferase; Validated	96.94
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	96.94
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	96.94
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	96.88
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	96.87
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	96.86
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	96.86
PRK06460	376	hypothetical protein; Provisional	96.84
PRK07811	388	cystathionine gamma-synthase; Provisional	96.84
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	96.84
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	96.77
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	96.76
PRK08247	366	cystathionine gamma-synthase; Reviewed	96.7
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	96.68
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	96.66
PRK07050	394	cystathionine beta-lyase; Provisional	96.65
PRK07049	427	methionine gamma-lyase; Validated	96.62
PLN02509	464	cystathionine beta-lyase	96.61
KOG1401|consensus	433		96.57
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	96.52
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	96.51
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	96.46
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	96.46
PRK07671	377	cystathionine beta-lyase; Provisional	96.42
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	96.42
PRK07046	453	aminotransferase; Validated	96.36
PRK07480	456	putative aminotransferase; Validated	96.31
PRK09028	394	cystathionine beta-lyase; Provisional	96.3
PRK07503	403	methionine gamma-lyase; Provisional	96.28
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	96.27
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	96.24
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	96.24
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	96.1
PRK06148	1013	hypothetical protein; Provisional	96.09
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	96.07
PRK06225	380	aspartate aminotransferase; Provisional	96.04
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	95.96
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	95.95
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	95.91
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	95.89
PRK09082	386	methionine aminotransferase; Validated	95.86
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	95.85
PRK08861	388	cystathionine gamma-synthase; Provisional	95.81
PRK07481	449	hypothetical protein; Provisional	95.78
PLN02271	586	serine hydroxymethyltransferase	95.75
PRK07678	451	aminotransferase; Validated	95.71
PRK13237	460	tyrosine phenol-lyase; Provisional	95.69
PRK07482	461	hypothetical protein; Provisional	95.65
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	95.6
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	95.6
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	95.58
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	95.47
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	95.44
PRK07483	443	hypothetical protein; Provisional	95.41
PRK06434	384	cystathionine gamma-lyase; Validated	95.4
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	95.38
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	95.36
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	95.35
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	95.34
PRK08776	405	cystathionine gamma-synthase; Provisional	95.32
PRK06541	460	hypothetical protein; Provisional	95.3
PRK08045	386	cystathionine gamma-synthase; Provisional	95.22
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	95.21
PRK12414	384	putative aminotransferase; Provisional	95.19
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	95.19
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	95.15
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	95.15
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	95.14
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	95.13
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	95.12
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	95.09
PRK06062	451	hypothetical protein; Provisional	95.08
cd00609	350	AAT_like Aspartate aminotransferase family. This f	95.07
PRK08064	390	cystathionine beta-lyase; Provisional	95.05
PRK05764	393	aspartate aminotransferase; Provisional	95.05
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	94.97
PRK08361	391	aspartate aminotransferase; Provisional	94.97
PRK09792	421	4-aminobutyrate transaminase; Provisional	94.95
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	94.86
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	94.85
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	94.84
PRK05965	459	hypothetical protein; Provisional	94.83
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	94.83
PRK05967	395	cystathionine beta-lyase; Provisional	94.78
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	94.73
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	94.64
PRK08297	443	L-lysine aminotransferase; Provisional	94.58
PRK06917	447	hypothetical protein; Provisional	94.51
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	94.45
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	94.42
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	94.31
PRK06108	382	aspartate aminotransferase; Provisional	94.3
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	94.3
PRK07036	466	hypothetical protein; Provisional	94.28
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	94.28
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	94.25
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	94.15
KOG1402|consensus	427		94.14
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	94.12
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	94.09
TIGR01814	406	kynureninase kynureninase. This model describes ky	94.08
PRK04612	408	argD acetylornithine transaminase protein; Provisi	93.97
PRK08088	425	4-aminobutyrate aminotransferase; Validated	93.92
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	93.8
PRK07582	366	cystathionine gamma-lyase; Validated	93.72
PRK03321	352	putative aminotransferase; Provisional	93.6
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	93.57
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	93.52
PRK07269	364	cystathionine gamma-synthase; Reviewed	93.49
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	93.33
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	93.03
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	92.8
PRK05957	389	aspartate aminotransferase; Provisional	92.77
PLN02656	409	tyrosine transaminase	92.32
PRK07683	387	aminotransferase A; Validated	92.27
PRK08354	311	putative aminotransferase; Provisional	91.78
PRK08068	389	transaminase; Reviewed	91.76
PRK06207	405	aspartate aminotransferase; Provisional	91.67
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	91.64
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	91.5
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	91.48
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	91.19
PRK07550	386	hypothetical protein; Provisional	91.15
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	90.76
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	90.61
PRK06348	384	aspartate aminotransferase; Provisional	90.29
PRK07682	378	hypothetical protein; Validated	90.28
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	90.22
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	90.14
PRK07309	391	aromatic amino acid aminotransferase; Validated	89.83
PRK01533	366	histidinol-phosphate aminotransferase; Validated	89.66
PRK06107	402	aspartate aminotransferase; Provisional	89.2
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	88.89
PRK07681	399	aspartate aminotransferase; Provisional	88.83
PRK08960	387	hypothetical protein; Provisional	88.65
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	88.48
PRK08363	398	alanine aminotransferase; Validated	87.92
PRK07324	373	transaminase; Validated	87.89
PRK06836	394	aspartate aminotransferase; Provisional	87.86
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	87.27
PRK07777	387	aminotransferase; Validated	86.78
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	86.75
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	86.65
PLN02409	401	serine--glyoxylate aminotransaminase	86.08
PRK06290	410	aspartate aminotransferase; Provisional	85.74
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	85.67
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	85.46
PLN02672	1082	methionine S-methyltransferase	85.23
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	85.16
PRK05942	394	aspartate aminotransferase; Provisional	84.85
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	84.68
PRK14012	404	cysteine desulfurase; Provisional	84.42
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	84.09
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	84.02
KOG0053|consensus	409		83.58
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	83.39
PRK09265	404	aminotransferase AlaT; Validated	83.14
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	83.04
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	82.74
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	82.51
PLN02187	462	rooty/superroot1	82.48
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	82.3
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	81.49
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	81.35
PLN00175	413	aminotransferase family protein; Provisional	80.85
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	80.79
PRK08912	387	hypothetical protein; Provisional	80.56
PLN02414	993	glycine dehydrogenase (decarboxylating)	80.55
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	80.55
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	80.26

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=100.00  E-value=4.1e-40  Score=291.04  Aligned_cols=151  Identities=32%  Similarity=0.514  Sum_probs=139.0

Q ss_pred             CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccc
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGG   88 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~   88 (174)
                      |++..++.+.|+.++++++||.++.+.+..     ...+..+|++++||||||||||++||++++++++++++||+|++|
T Consensus         1 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~g   75 (388)
T COG0156           1 MDFLSFLRQALQALKAEGLYRGLRALDRRQ-----GLAIRADGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGG   75 (388)
T ss_pred             CchHHHHHHHHHHHHhhccccchhhccccC-----CcceecCCceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCC
Confidence            467788999999999999999998876543     234466789999999999999999999999999999999999999


Q ss_pred             cccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc--------------CCCCeeE-EEEEEecCCCH
Q psy16850         89 TRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM--------------IPYFTEL-IYFYRFLANTT  153 (174)
Q Consensus        89 Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~--------------~~g~~~s-~~~~~f~HNd~  153 (174)
                      ||+++|+.++|.+||++||+|+|+|+||+|+|||.||+|+|++|+++              ++|+++| +++++|+|||+
T Consensus        76 sR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~HnD~  155 (388)
T COG0156          76 SRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDL  155 (388)
T ss_pred             cCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecCCCH
Confidence            99999999999999999999999999999999999999999999983              6788888 89999999999


Q ss_pred             HHHHHHHHHhc
Q psy16850        154 DIIKEASKELQ  164 (174)
Q Consensus       154 ~~Le~~L~~~~  164 (174)
                      ++||++|++..
T Consensus       156 ~~Le~~l~~~~  166 (388)
T COG0156         156 DHLEALLEEAR  166 (388)
T ss_pred             HHHHHHHHhhh
Confidence            99999999964

>KOG1360|consensus

Probab=100.00  E-value=5e-34  Score=250.86  Aligned_cols=163  Identities=53%  Similarity=0.851  Sum_probs=147.4

Q ss_pred             CCCChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecC-CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCC
Q psy16850          7 EPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS-EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTG   85 (174)
Q Consensus         7 ~~~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~-g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~g   85 (174)
                      +.++++.||+++|++.++|..||+|..+.|.++.++-..+..-. .+++--||||||||++.||+|++|+.++|++||.|
T Consensus       125 ~~F~Yd~ff~~~i~kKk~DhsYRvFk~vNRlA~~fP~A~~~se~t~k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~G  204 (570)
T KOG1360|consen  125 PTFDYDRFFREEIDKKKRDHSYRVFKNVNRLAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAG  204 (570)
T ss_pred             ccccHHHHHHHHHHhhhccchhHHHHHHhHhhhhccchhhccccccCceEEEecCccccccCChHHHHHHHHHHHHcCCC
Confidence            46889999999999999999999999999988887755443211 36789999999999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEe
Q psy16850         86 AGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRF  148 (174)
Q Consensus        86 s~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f  148 (174)
                      +||.|.++|+...|.+||++||+++++|+||+|+|+|.||-+++.+|++++|||...                 +..+.|
T Consensus       205 AGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IF  284 (570)
T KOG1360|consen  205 AGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIF  284 (570)
T ss_pred             cCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceee
Confidence            999999999999999999999999999999999999999999999999988888654                 356899


Q ss_pred             cCCCHHHHHHHHHHhcccccc
Q psy16850        149 LANTTDIIKEASKELQEDMID  169 (174)
Q Consensus       149 ~HNd~~~Le~~L~~~~~~~~~  169 (174)
                      ||||++|||.+|++..+..+.
T Consensus       285 rHND~~hL~~lL~~~~~svPK  305 (570)
T KOG1360|consen  285 RHNDLDHLEQLLQSSPKSVPK  305 (570)
T ss_pred             ccCCHHHHHHHHHhCCCCCCc
Confidence            999999999999998876543

>PLN02955 8-amino-7-oxononanoate synthase

Probab=100.00  E-value=3.4e-33  Score=252.27  Aligned_cols=143  Identities=22%  Similarity=0.347  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccC
Q psy16850         15 FHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISG   94 (174)
Q Consensus        15 ~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G   94 (174)
                      +.+++.++..+|..+.-       ++...+.. ..++++++||+|||||||++||+|++++.+++++||+|++|||+++|
T Consensus        73 ~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G  144 (476)
T PLN02955         73 FQKWLHDIPSNGEEIFS-------GDALAEER-KGRFKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICG  144 (476)
T ss_pred             HHHHHHHHhcccccccC-------CCCccccc-cCCCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccc
Confidence            45677777777765410       11111111 23678999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc--------------c--------------cCCCCeeE----
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG--------------K--------------MIPYFTEL----  142 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~--------------~--------------~~~g~~~s----  142 (174)
                      ++.+|++||++||+|+|.|+||+|+|||+||+++|++|+              +              +++|++++    
T Consensus       145 ~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~  224 (476)
T PLN02955        145 YTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQG  224 (476)
T ss_pred             ChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccC
Confidence            999999999999999999999999999999999999983              1              14566665    


Q ss_pred             -EEEEEecCCCHHHHHHHHHHhcc
Q psy16850        143 -IYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       143 -~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                       +.+++|+||||++||++|+++..
T Consensus       225 ~a~~~~f~HND~~~Le~~L~~~~~  248 (476)
T PLN02955        225 NVEVFVYRHCDMYHLNSLLSSCKM  248 (476)
T ss_pred             CceEEEeCCCCHHHHHHHHHhCCC
Confidence             67899999999999999988765

>KOG1357|consensus

Probab=99.97  E-value=1.3e-31  Score=237.76  Aligned_cols=159  Identities=21%  Similarity=0.277  Sum_probs=148.3

Q ss_pred             ChHHHHHHHHHHHHHhCCCC--------ceeeecccccCCCCceeeecCCeeEEEeccCcccCCCC-CccchHHHHHHHH
Q psy16850         10 PYEDFFHEQIMKKKRDHSYR--------VFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSC-HPKVKSAVREALE   80 (174)
Q Consensus        10 ~~~~~~~~~L~~~~~~g~~r--------~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~-~p~v~~a~~~al~   80 (174)
                      +|++||.++|+.+.+|++.|        .++.++|.+++++|....+.+--++||++|+|||||++ +..+.+++.++++
T Consensus        86 ~Fe~FY~Rriy~ri~Dc~~RPi~~VPG~~v~l~dR~S~D~n~tfk~tG~~~~~lNlgSYNYLGFa~~~g~ca~~~~~~~~  165 (519)
T KOG1357|consen   86 SFESFYSRRIYRRIRDCFERPICSVPGAWVDLMDRVSDDYNWTFKYTGTRSRCLNLGSYNYLGFAQSVGPCAEASLKSFD  165 (519)
T ss_pred             hHHHHHHHHHHHHHhHhhcCCCcCCCCceEEeeeeeccCCCceEEeccceeeeeeecccccccccccCCcCChHHHHHHH
Confidence            48999999999999999988        58889999999999988888888999999999999997 7888999999999


Q ss_pred             HcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc--------------CCCCeeE-EEE
Q psy16850         81 KFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM--------------IPYFTEL-IYF  145 (174)
Q Consensus        81 ~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~--------------~~g~~~s-~~~  145 (174)
                      +||.+.|+||...|+..+|.+||+..|+|+|+|+|++|++||.||...||+|.+.              +-|+++| |.+
T Consensus       166 kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAti  245 (519)
T KOG1357|consen  166 KYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATT  245 (519)
T ss_pred             HhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchheeccccccCceE
Confidence            9999999999999999999999999999999999999999999999999999973              5788999 899


Q ss_pred             EEecCCCHHHHHHHHHHhccccc
Q psy16850        146 YRFLANTTDIIKEASKELQEDMI  168 (174)
Q Consensus       146 ~~f~HNd~~~Le~~L~~~~~~~~  168 (174)
                      +.|+||||++||++|+...-+.=
T Consensus       246 RVfkHNdm~~LEr~Lrd~I~~gq  268 (519)
T KOG1357|consen  246 RVFRHNDMQGLERLLRDAIVYGQ  268 (519)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCC
Confidence            99999999999999998876433

>PLN02483 serine palmitoyltransferase

Probab=99.96  E-value=2.5e-29  Score=227.71  Aligned_cols=153  Identities=25%  Similarity=0.317  Sum_probs=140.4

Q ss_pred             CChHHHHHHHHHHHHHhCCCC--------ceeeecccccCCCCceeeecCCeeEEEeccCcccCCCC-CccchHHHHHHH
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYR--------VFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSC-HPKVKSAVREAL   79 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r--------~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~-~p~v~~a~~~al   79 (174)
                      .+|++||.++|+.+.+||+.|        ++.+++|.+++.++....+.+++++|||+|||||||++ +|.+.+++.+++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai  128 (489)
T PLN02483         49 LGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYCTPRVIESL  128 (489)
T ss_pred             cCHHHHHHHHhhhhcccccCCCCCCCCCCeEEEEEeecCCCCceEEecCCCceEEEeecCCccCcCCCCHHHHHHHHHHH
Confidence            569999999999999999988        68889999988888888888899999999999999996 788999999999


Q ss_pred             HHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------
Q psy16850         80 EKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------  142 (174)
Q Consensus        80 ~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------  142 (174)
                      ++||+++|+||+.+|+...|.+||++||+|+|.|++++|++||.+|++++++|++  +|+.+.                 
T Consensus       129 ~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al~~--~Gd~Vi~d~~~h~s~~~~~~~~G  206 (489)
T PLN02483        129 KKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIG--KGGLIISDSLNHNSIVNGARGSG  206 (489)
T ss_pred             HHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCC--CCCEEEEcchhhHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999987  454332                 


Q ss_pred             EEEEEecCCCHHHHHHHHHHh
Q psy16850        143 IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       143 ~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      ++++.|+|||+++||++|++.
T Consensus       207 a~v~~~~~~d~~~le~~l~~~  227 (489)
T PLN02483        207 ATIRVFQHNTPSHLEEVLREQ  227 (489)
T ss_pred             CeEEEEeCCCHHHHHHHHHhh
Confidence            578899999999999999864

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.95  E-value=2.2e-27  Score=208.43  Aligned_cols=155  Identities=45%  Similarity=0.679  Sum_probs=129.4

Q ss_pred             CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeee--cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCc
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYT--DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGA   86 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~--~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs   86 (174)
                      |++.+++.++|++++++|++|.+++++...+... ...+.  .+++++|||+|||||||++||+|++++.+++++||+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~   79 (406)
T PRK13393          1 MNYEQYFQRQLDGLRREGRYRVFADLERQAGAFP-RATHHGPDGPREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGA   79 (406)
T ss_pred             CChHHHHHHHHHHHHHcCCCceeeeccccCCCcc-eeEEeccCCCccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCC
Confidence            5677888889999999999999888765433111 00111  24589999999999999999999999999999999999


Q ss_pred             cccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEec
Q psy16850         87 GGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFL  149 (174)
Q Consensus        87 ~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~  149 (174)
                      ++||+++|+.+.|.+||++||+++|.|++++|+|||.||.+++.+|+...+|..+.                 +.++.|+
T Consensus        80 ~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~  159 (406)
T PRK13393         80 GGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFR  159 (406)
T ss_pred             cccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeC
Confidence            99999999999999999999999999999999999999999999887532333222                 3577899


Q ss_pred             CCCHHHHHHHHHHhc
Q psy16850        150 ANTTDIIKEASKELQ  164 (174)
Q Consensus       150 HNd~~~Le~~L~~~~  164 (174)
                      |||+++||++++...
T Consensus       160 ~~d~~~l~~~l~~~~  174 (406)
T PRK13393        160 HNDPADLERKLSDLD  174 (406)
T ss_pred             CCCHHHHHHHHHhcc
Confidence            999999999998763

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.95  E-value=3.1e-27  Score=206.81  Aligned_cols=156  Identities=46%  Similarity=0.702  Sum_probs=128.7

Q ss_pred             CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeec-CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcc
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD-SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAG   87 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~-~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~   87 (174)
                      |++.+++.++|+++++.|++|.+++++...+.......+.. +|++++||+|||||||+.||+|++|+.+++++||+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~   80 (402)
T TIGR01821         1 MDYDQFFNKEIDKLHLEGRYRVFADLERQAGEFPFAQWHRPDGAKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAG   80 (402)
T ss_pred             CChHHHHHHHHHHHHHcCCCceeeeccccccCCCcceEEecCCCeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCc
Confidence            34567788899999999999999887654331111112223 45999999999999999999999999999999999999


Q ss_pred             ccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee----------------E-EEEEEecC
Q psy16850         88 GTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE----------------L-IYFYRFLA  150 (174)
Q Consensus        88 ~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~----------------s-~~~~~f~H  150 (174)
                      +||+++|+.+.|.+||++||+++|.+++++|+||+.||.++|.++....++...                + +.+.+|+|
T Consensus        81 ~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~  160 (402)
T TIGR01821        81 GTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH  160 (402)
T ss_pred             chhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC
Confidence            999999999999999999999999999999999999999999988642122211                1 35678999


Q ss_pred             CCHHHHHHHHHHhc
Q psy16850        151 NTTDIIKEASKELQ  164 (174)
Q Consensus       151 Nd~~~Le~~L~~~~  164 (174)
                      ||+++||++++...
T Consensus       161 ~d~~~l~~~l~~~~  174 (402)
T TIGR01821       161 NDVAHLEKLLQSVD  174 (402)
T ss_pred             CCHHHHHHHHHhcc
Confidence            99999999998654

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>KOG1359|consensus

Probab=99.95  E-value=7.2e-29  Score=211.87  Aligned_cols=145  Identities=22%  Similarity=0.379  Sum_probs=123.3

Q ss_pred             HHHHHHHhCCCCceeeecccccCCCCceeeecC--CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCC
Q psy16850         18 QIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS--EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGN   95 (174)
Q Consensus        18 ~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~--g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~   95 (174)
                      .|+-++..|.|..-+++.+.++     +.+.++  .++++|||.||||||+.||+|+++.++++++||.|.+++|+++|+
T Consensus        36 ~legi~gagtwk~erVi~s~q~-----p~i~v~G~~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGt  110 (417)
T KOG1359|consen   36 ELEGIKGAGTWKRERVITSRQG-----PTIQVKGSDKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGT  110 (417)
T ss_pred             ccceecccccceeeeEEeeccc-----ceEEEeccccceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecc
Confidence            3555666777887777766543     334444  478999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc--------------cCCCCeeEEEEEEecCCCHHHHHHHHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK--------------MIPYFTELIYFYRFLANTTDIIKEASK  161 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~--------------~~~g~~~s~~~~~f~HNd~~~Le~~L~  161 (174)
                      .++|..||++||+|+|+|+||+|+|||.||.|++-+|..              +++|+++.   ++|+|-|+-+||.+++
T Consensus       111 q~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLc---kry~h~dv~~l~~~l~  187 (417)
T KOG1359|consen  111 QDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLC---KRYRHVDVFDLEHCLI  187 (417)
T ss_pred             hHHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHH---hhhccchhHHHHHHHH
Confidence            999999999999999999999999999999999999864              24454443   4999999999999999


Q ss_pred             Hhccccccc
Q psy16850        162 ELQEDMIDL  170 (174)
Q Consensus       162 ~~~~~~~~~  170 (174)
                      +..+-+.++
T Consensus       188 ~a~k~r~kl  196 (417)
T KOG1359|consen  188 SACKMRLKL  196 (417)
T ss_pred             HhhhheEEE
Confidence            888765543

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.95  E-value=7.9e-27  Score=204.34  Aligned_cols=156  Identities=47%  Similarity=0.702  Sum_probs=128.6

Q ss_pred             CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecC--CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCc
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDS--EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGA   86 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~--g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs   86 (174)
                      |.+..++.+.|+.++++|++|.+++++...+.......+..+  |++++||+|||||||+.||+|++++.+++++||.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~   80 (407)
T PRK09064          1 MDYEAFFENALDRLKAEGRYRVFADLERIAGRFPYATWRRPDGGEREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGA   80 (407)
T ss_pred             CCHHHHHHHHHHHHHHcCCCceeeecccccCCCCceEEEeecCCCceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence            456678888999999999999988876543321111121233  589999999999999999999999999999999999


Q ss_pred             cccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCC----------------eeE-EEEEEec
Q psy16850         87 GGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYF----------------TEL-IYFYRFL  149 (174)
Q Consensus        87 ~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~----------------~~s-~~~~~f~  149 (174)
                      ++||.++|+.+.|.+||++||+|+|.+++++|+|||.||.++|.++....++.                +.+ +.+..|+
T Consensus        81 ~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~  160 (407)
T PRK09064         81 GGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFR  160 (407)
T ss_pred             CCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEEC
Confidence            99999999999999999999999999999999999999999999886421222                111 3567899


Q ss_pred             CCCHHHHHHHHHHhc
Q psy16850        150 ANTTDIIKEASKELQ  164 (174)
Q Consensus       150 HNd~~~Le~~L~~~~  164 (174)
                      |||+++||+++++..
T Consensus       161 ~~d~~~le~~l~~~~  175 (407)
T PRK09064        161 HNDVAHLEELLAAAD  175 (407)
T ss_pred             CCCHHHHHHHHHhcc
Confidence            999999999998653

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.92  E-value=3.3e-25  Score=195.37  Aligned_cols=109  Identities=19%  Similarity=0.315  Sum_probs=100.1

Q ss_pred             EEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         55 TVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        55 inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      |||+|||||||++||++++++.+++++||+|+||||..+|+...|.+||++||+|+|.|+|++|+|||+||+++|.++.+
T Consensus         1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~   80 (392)
T PLN03227          1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAK   80 (392)
T ss_pred             CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             cCCCCeeE-----------------EEEEEecCCCHHHHHHHHHHhcc
Q psy16850        135 MIPYFTEL-----------------IYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       135 ~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                        +|+++.                 +.++.|+|||+++|+.+++...+
T Consensus        81 --~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~~~l~~~~~~i~~  126 (392)
T PLN03227         81 --RGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRVLEQVRA  126 (392)
T ss_pred             --CCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCHHHHHHHHHHhhh
Confidence              454332                 36778999999999999887753

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.92  E-value=5.9e-24  Score=186.79  Aligned_cols=155  Identities=42%  Similarity=0.683  Sum_probs=128.2

Q ss_pred             CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceee--ecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCc
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEY--TDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGA   86 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~--~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs   86 (174)
                      |.+.+++...|++.++.|++|+.+.++..++... ...+  ..+|+++++|+|||||||+.||++++++.+++++||+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~   80 (410)
T PRK13392          2 MNYDSYFDAALAQLHQEGRYRVFADLEREAGRFP-RARDHGPDGPRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGA   80 (410)
T ss_pred             CChHHHHHHHHHHHHHcCCCccccccccccCccc-eeeecccCCCceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCC
Confidence            5567888889999999999999887765433111 0011  124689999999999999999999999999999999999


Q ss_pred             cccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEec
Q psy16850         87 GGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFL  149 (174)
Q Consensus        87 ~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~  149 (174)
                      ++||.++|+.+.|.+||++||+++|.+++++|+||+.||.++|.+|+...+|..+.                 +.+..|+
T Consensus        81 ~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~  160 (410)
T PRK13392         81 GGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFR  160 (410)
T ss_pred             chhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEe
Confidence            99999999999999999999999999999999999999999999886422333211                 3667899


Q ss_pred             CCCHHHHHHHHHHhc
Q psy16850        150 ANTTDIIKEASKELQ  164 (174)
Q Consensus       150 HNd~~~Le~~L~~~~  164 (174)
                      |||+++|++.+++..
T Consensus       161 ~~d~~~l~~~l~~~~  175 (410)
T PRK13392        161 HNDLADLEEQLASVD  175 (410)
T ss_pred             CCCHHHHHHHHHhcc
Confidence            999999999998764

>KOG1358|consensus

Probab=99.92  E-value=9.2e-26  Score=197.92  Aligned_cols=122  Identities=20%  Similarity=0.282  Sum_probs=112.6

Q ss_pred             CceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchh
Q psy16850         43 AAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCY  122 (174)
Q Consensus        43 ~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy  122 (174)
                      ..+.++++|++++||+|+|||||..++++++.+...+++||+|+||.|-++|+.+.|-+||+.||+|+|+|++++|+-||
T Consensus        85 ~~~~~~i~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF  164 (467)
T KOG1358|consen   85 MLPHVTIDGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGF  164 (467)
T ss_pred             cCCceEecCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeecccc
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc--------------CCCCeeE-EEEEEecCCCHHHHHHHHHHhc
Q psy16850        123 VANDSTLFTLGKM--------------IPYFTEL-IYFYRFLANTTDIIKEASKELQ  164 (174)
Q Consensus       123 ~aN~~~i~aL~~~--------------~~g~~~s-~~~~~f~HNd~~~Le~~L~~~~  164 (174)
                      .|--++|||+++.              ..|..+| .++..|+||||++||+++.+..
T Consensus       165 ~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhndm~~lerll~E~~  221 (467)
T KOG1358|consen  165 STIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHNDMEDLERLLPEQE  221 (467)
T ss_pred             chhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCCCHHHHHHhccCcc
Confidence            9999999999974              2334445 6889999999999999998877

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.90  E-value=7.5e-23  Score=177.54  Aligned_cols=145  Identities=23%  Similarity=0.381  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeec-CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccc
Q psy16850         12 EDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD-SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTR   90 (174)
Q Consensus        12 ~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~-~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr   90 (174)
                      ..++..+|++++++|.+|..+.+....+     ..+.. +|+++|||+|||||||+.+|++++++.+++++||.|.++||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~   76 (393)
T TIGR01822         2 YAQLAAELESIREAGLFKSERIITSPQG-----ADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVR   76 (393)
T ss_pred             hhHHHHHHHHHHHcCCCCcccccccCCC-----ceEEecCCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcC
Confidence            3456678889999999998877765432     33445 89999999999999999999999999999999999999999


Q ss_pred             cccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCH
Q psy16850         91 NISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTT  153 (174)
Q Consensus        91 ~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~  153 (174)
                      .+.|+.++|.+||+.||+++|.+++++|+||+.||.+++.+|.+  +|+...                 +....|.|+|+
T Consensus        77 ~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~--~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~~~d~  154 (393)
T TIGR01822        77 FICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYANNDM  154 (393)
T ss_pred             cccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCC--CCCEEEEeccccHHHHHHHHhcCCceEEeCCCCH
Confidence            99999999999999999999999999999999999999999976  454332                 24567899999


Q ss_pred             HHHHHHHHHh
Q psy16850        154 DIIKEASKEL  163 (174)
Q Consensus       154 ~~Le~~L~~~  163 (174)
                      ++||+.+++.
T Consensus       155 ~~l~~~i~~~  164 (393)
T TIGR01822       155 ADLEAQLKEA  164 (393)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.90  E-value=1.4e-23  Score=182.59  Aligned_cols=113  Identities=22%  Similarity=0.311  Sum_probs=99.1

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHc-------CCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKF-------GTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~-------G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      .++|||+|||||||+.+|++++++.+++++|       |+|++|||++.|+..+|+++|++||+|+|.+++++|+|||.|
T Consensus         4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~a   83 (370)
T PRK05937          4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMA   83 (370)
T ss_pred             CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHHH
Confidence            4689999999999999999999999999999       699999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccC------CCCeeE---------EEEEEecCCCHHHHHHHHHHhc
Q psy16850        125 NDSTLFTLGKMI------PYFTEL---------IYFYRFLANTTDIIKEASKELQ  164 (174)
Q Consensus       125 N~~~i~aL~~~~------~g~~~s---------~~~~~f~HNd~~~Le~~L~~~~  164 (174)
                      |+++++++.+..      +..|.+         .....|+|||+++||++|++..
T Consensus        84 ~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~  138 (370)
T PRK05937         84 NLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCR  138 (370)
T ss_pred             HHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHhhh
Confidence            999999886420      111111         2457899999999999998653

>PLN02822 serine palmitoyltransferase

Probab=99.89  E-value=2.9e-23  Score=187.82  Aligned_cols=122  Identities=20%  Similarity=0.263  Sum_probs=109.6

Q ss_pred             ceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhH
Q psy16850         44 AYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV  123 (174)
Q Consensus        44 ~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~  123 (174)
                      +.++.++|+++|||+|||||||..||+|++++.+++++||+|+||||.++|+.+.|.+||++||+|++.+++++|++||.
T Consensus       101 G~~i~~~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~  180 (481)
T PLN02822        101 GPHTIINGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS  180 (481)
T ss_pred             CCeEEECCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHH
Confidence            34556899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc------CCCC--------eeE-EEEEEecCCCHHHHHHHHHHhcc
Q psy16850        124 ANDSTLFTLGKM------IPYF--------TEL-IYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       124 aN~~~i~aL~~~------~~g~--------~~s-~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                      +|.++|+++++.      .+++        .++ ++++.|+|||+++|+..+++...
T Consensus       181 a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~  237 (481)
T PLN02822        181 TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTA  237 (481)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh
Confidence            999999999873      1222        223 58899999999999999987654

>PRK07179 hypothetical protein; Provisional

Probab=99.85  E-value=3.1e-20  Score=163.10  Aligned_cols=146  Identities=21%  Similarity=0.217  Sum_probs=113.5

Q ss_pred             CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccc
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGG   88 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~   88 (174)
                      ..+-.|++++++..-++..........        -..-...|+.++||+|||||||++||+|++++.+++++||.++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~   90 (407)
T PRK07179         19 PPLPDFIEERLDKYIEERVNKNWNGKH--------LVLGKTPGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVM   90 (407)
T ss_pred             CCCcHHHHHHHHHHHHHhhccCcCCce--------EEeecCCCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCc
Confidence            335577777776555543322210000        000123678899999999999999999999999999999988877


Q ss_pred             cccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC
Q psy16850         89 TRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN  151 (174)
Q Consensus        89 Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN  151 (174)
                      |+...+..+.+.+||++||+++|.+.+++++||+.||.++|.+++.  +|++..                 +.+..|+||
T Consensus        91 s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~--~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~  168 (407)
T PRK07179         91 SAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIAD--PNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHN  168 (407)
T ss_pred             cccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCC--CCCEEEEECCcCHHHHHHHHHCCCeEEEecCC
Confidence            7777777789999999999999999999999999999999999976  344322                 367899999


Q ss_pred             CHHHHHHHHHHhc
Q psy16850        152 TTDIIKEASKELQ  164 (174)
Q Consensus       152 d~~~Le~~L~~~~  164 (174)
                      |+++|++.|++..
T Consensus       169 d~~~l~~~l~~~~  181 (407)
T PRK07179        169 DVDHLRRQIERHG  181 (407)
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999997643

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.73  E-value=2.4e-16  Score=135.43  Aligned_cols=148  Identities=27%  Similarity=0.421  Sum_probs=129.8

Q ss_pred             CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccc
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGG   88 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~   88 (174)
                      |+|.+.++..|.+++..|+||.++++.+..+     .++..+|+++|+|++|+++|+..+|+|++++.++++.|+.+.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~   75 (385)
T PRK05958          1 MSWLDRLEAALAQRRAAGLYRSLRPREGGAG-----RWLVVDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGG   75 (385)
T ss_pred             CcHHHHHHHHHHHHHHcCCCccccccccCCC-----ceeEeCCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCC
Confidence            6788899999999999999999999887644     34455899999999999999999999999999999999988888


Q ss_pred             cccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC
Q psy16850         89 TRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN  151 (174)
Q Consensus        89 Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN  151 (174)
                      ++...|...+..++++.+|+++|.+.++++++|..+|..++.++.+  +|....                 +.++.++++
T Consensus        76 ~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~--~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~~  153 (385)
T PRK05958         76 SRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAG--KGDLIVSDKLNHASLIDGARLSRARVRRYPHN  153 (385)
T ss_pred             cCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCC--CCCEEEEeCccCHHHHHHHHhcCCceEEeCCC
Confidence            8998899999999999999999999999999999999998888866  444332                 356788899


Q ss_pred             CHHHHHHHHHHh
Q psy16850        152 TTDIIKEASKEL  163 (174)
Q Consensus       152 d~~~Le~~L~~~  163 (174)
                      |+++||++++..
T Consensus       154 d~~~l~~~i~~~  165 (385)
T PRK05958        154 DVDALEALLAKW  165 (385)
T ss_pred             CHHHHHHHHHhc
Confidence            999999999764

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.67  E-value=6.2e-16  Score=131.23  Aligned_cols=110  Identities=46%  Similarity=0.670  Sum_probs=97.6

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFT  131 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~a  131 (174)
                      ++++|||||||||+++||+|++++.+++++|+.+.++++...|..+.+++|++.||+++|.++++++++|..+|..++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~   80 (349)
T cd06454           1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLST   80 (349)
T ss_pred             CCceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHH
Confidence            36899999999999999999999999999998877788888899999999999999999999999999999999999988


Q ss_pred             hcccCCCCeeE-----------------EEEEEecCCCHHHHHHHHHHh
Q psy16850        132 LGKMIPYFTEL-----------------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       132 L~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      +.+  +|.++.                 +.+..++..|+++||+++++.
T Consensus        81 ~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~le~~i~~~  127 (349)
T cd06454          81 LAG--KGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREA  127 (349)
T ss_pred             hcC--CCCEEEEehhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHHh
Confidence            875  444322                 356778899999999999875

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.67  E-value=3.2e-15  Score=129.15  Aligned_cols=146  Identities=27%  Similarity=0.435  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeec-CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcccc
Q psy16850         11 YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD-SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGT   89 (174)
Q Consensus        11 ~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~-~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~S   89 (174)
                      +..++++.|++++++|.++....+.+.     .+.+++. +|+.+|||++++|+|+..+|++++++.+++++++.+.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~   79 (397)
T PRK06939          5 FYAQLREELEEIKAEGLYKEERVITSP-----QGADITVADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASV   79 (397)
T ss_pred             HHHHHHHHHHHHHHcCCCcccccccCC-----CCceEEecCCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCccc
Confidence            356788889999999998864433322     3345555 8999999999999999999999999999999998888889


Q ss_pred             ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCC
Q psy16850         90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANT  152 (174)
Q Consensus        90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd  152 (174)
                      +...|..++.+++++.+|+++|.++.+++++|..+|.+++.++.+  +|....                 ++++.++++|
T Consensus        80 ~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~--~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d  157 (397)
T PRK06939         80 RFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLG--KEDAIISDALNHASIIDGVRLCKAKRYRYANND  157 (397)
T ss_pred             ccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCC--CCCEEEEEhhhhHHHHHHHHhcCCceEEeCCCC
Confidence            999999999999999999999999999999999999999999876  454332                 3567889999


Q ss_pred             HHHHHHHHHHh
Q psy16850        153 TDIIKEASKEL  163 (174)
Q Consensus       153 ~~~Le~~L~~~  163 (174)
                      +++|++.+++.
T Consensus       158 ~~~l~~~i~~~  168 (397)
T PRK06939        158 MADLEAQLKEA  168 (397)
T ss_pred             HHHHHHHHHhh
Confidence            99999999764

>PRK07505 hypothetical protein; Provisional

Probab=99.63  E-value=3.3e-15  Score=131.21  Aligned_cols=114  Identities=23%  Similarity=0.268  Sum_probs=93.4

Q ss_pred             ecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcC-CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHH
Q psy16850         48 TDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFG-TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAND  126 (174)
Q Consensus        48 ~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G-~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~  126 (174)
                      ..+|+++|||+||+||||..||+|++|+.+.+++|| .++++++... ..+++.+||++||+++|. ++++|+||+.||.
T Consensus        42 d~~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~  119 (402)
T PRK07505         42 LADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRV-RSQILKDLEEALSELFGA-SVLTFTSCSAAHL  119 (402)
T ss_pred             ecCCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhh-hhHHHHHHHHHHHHHhCC-CEEEECChHHHHH
Confidence            368999999999999999999999999999999998 6777776643 578999999999999998 8999999999999


Q ss_pred             HHHHHhccc-C---CC--------CeeE-----------EEEEEecCCCHHHHHHHHHHh
Q psy16850        127 STLFTLGKM-I---PY--------FTEL-----------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       127 ~~i~aL~~~-~---~g--------~~~s-----------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      ++|..+... .   ..        .|-+           ..++.|+|||+++|+++++..
T Consensus       120 ~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~~  179 (402)
T PRK07505        120 GILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHNDLDALEDICKTN  179 (402)
T ss_pred             HHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhcC
Confidence            999765410 0   00        0001           357889999999999988643

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.61  E-value=3.2e-15  Score=132.94  Aligned_cols=106  Identities=25%  Similarity=0.305  Sum_probs=90.0

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcEEE-ecchhHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAGLV-FTSCYVAND  126 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~al~-f~sGy~aN~  126 (174)
                      .+-+++||||+    ||++++++..++ .+||.|++|||+++| .+.+++||+    .+|+++|.+.|++ ++|||+||.
T Consensus        30 ~~~l~~sen~~----~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~  104 (416)
T PRK13034         30 HLELIASENFT----SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANG  104 (416)
T ss_pred             CeeecccccCC----CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHH
Confidence            46689999998    999999999995 999999999999999 689999999    9999999999977 489999999


Q ss_pred             HHHHHhcccCCCCeeE--------------------EEE--EEecC------CCHHHHHHHHHHhcc
Q psy16850        127 STLFTLGKMIPYFTEL--------------------IYF--YRFLA------NTTDIIKEASKELQE  165 (174)
Q Consensus       127 ~~i~aL~~~~~g~~~s--------------------~~~--~~f~H------Nd~~~Le~~L~~~~~  165 (174)
                      +++.+|++  +|+++.                    ..+  .+|.|      +|+++||++++...+
T Consensus       105 ~~l~al~~--~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~  169 (416)
T PRK13034        105 AVYLALLK--PGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKP  169 (416)
T ss_pred             HHHHHhcC--CCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCC
Confidence            99999986  333222                    111  47888      999999999976433

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.59  E-value=4.3e-14  Score=122.24  Aligned_cols=141  Identities=28%  Similarity=0.403  Sum_probs=119.4

Q ss_pred             HHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCc
Q psy16850         17 EQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNS   96 (174)
Q Consensus        17 ~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~   96 (174)
                      +.|+..++.|.|.....+.+..     +.++..+|+++|||+++||||+..+|++++++.+++++++.+.++.+...|..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~   77 (385)
T TIGR01825         3 QDLNGLKENGLYISIRVLESAQ-----GPRVRVNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTL   77 (385)
T ss_pred             hHHHHHHHcCCcccccccccCC-----CceEEECCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCc
Confidence            4567778889998777776543     33455899999999999999999999999999999999988778888888999


Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCHHHHHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEA  159 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~  159 (174)
                      ++.+++++.+++++|.+.+++++||..+|..++.++.+  +|..+.                 +.+..++|.|+++|++.
T Consensus        78 ~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~--~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~  155 (385)
T TIGR01825        78 RLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLR--KGDIVLSDELNHASIIDGLRLTKATKKIYKHADMDDLDRV  155 (385)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCC--CCCEEEEEccccHHHHHHHHhcCCceEEeCCCCHHHHHHH
Confidence            99999999999999999999999999999999998876  444322                 24566889999999999


Q ss_pred             HHHhc
Q psy16850        160 SKELQ  164 (174)
Q Consensus       160 L~~~~  164 (174)
                      +++..
T Consensus       156 l~~~~  160 (385)
T TIGR01825       156 LRENP  160 (385)
T ss_pred             HHhhc
Confidence            88653

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.57  E-value=6.1e-14  Score=119.09  Aligned_cols=119  Identities=31%  Similarity=0.468  Sum_probs=104.3

Q ss_pred             CceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchh
Q psy16850         43 AAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCY  122 (174)
Q Consensus        43 ~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy  122 (174)
                      .+.++..+|+++|+|++|||||+..+|++++++.+++++||.+.++++...|......+|++.||+|+|.+..+++++|.
T Consensus         7 ~~~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~   86 (360)
T TIGR00858         7 PGPEVVRDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGY   86 (360)
T ss_pred             CCCeEEECCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchH
Confidence            34556679999999999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCHHHHHHHHHHh
Q psy16850        123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      .+++.++.++.+  +|..+.                 +.++.++.+|+++|++.+++.
T Consensus        87 ~~~~~~l~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~  142 (360)
T TIGR00858        87 LANVGVISALVG--KGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKN  142 (360)
T ss_pred             HHHHHHHHHhCC--CCCEEEEEccccHHHHHHHHhcCCceEEecCCCHHHHHHHHHHc
Confidence            999998888865  454332                 356678899999999999864

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.50  E-value=4.6e-14  Score=123.02  Aligned_cols=66  Identities=27%  Similarity=0.263  Sum_probs=63.0

Q ss_pred             cCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchhHHHHHHHHHhcc
Q psy16850         59 SNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        59 SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      -||||||++||+|++++.+++++||          |+..+|++||++||+|+|.  |.+++|++||.||.+++.+|++
T Consensus        26 ~~~ylgl~~~~~~~~~~~~~~~~~~----------g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~   93 (346)
T TIGR03576        26 LYDLTGLAGGFKIDEEDLELLETYV----------GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEP   93 (346)
T ss_pred             ccccccCCCChhHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCC
Confidence            5899999999999999999999996          5779999999999999999  9999999999999999999986

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.38  E-value=2.7e-12  Score=112.74  Aligned_cols=111  Identities=17%  Similarity=0.147  Sum_probs=88.5

Q ss_pred             ecCCeeEEEeccCcccCCCC---CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSNDYLGMSC---HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~SndYLGL~~---~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|||+|+ |++++.   ||+|++|+.+.+++++.++   +.+  .++.+.+||++|++++|.+.+++++||+.|
T Consensus        33 ~~~g~~~lD~~s~-~~~~~~Gh~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A  106 (401)
T TIGR01885        33 DVEGKRYLDFLSA-YSAVNQGHCHPKIVKALTEQAQKLTLSS---RAF--YNDVFGEFAEYVTKLFGYDKVLPMNTGAEA  106 (401)
T ss_pred             eCCCCEEEEcccC-HhhccCCCCCHHHHHHHHHHHHhccccc---ccc--CCHHHHHHHHHHHhhcCCCEEEEeCccHHH
Confidence            3589999999995 999985   9999999999999877443   322  578999999999999999999999999999


Q ss_pred             HHHHHHHhc-----------cc-----CCCC---------eeE-------------EEEEEecCCCHHHHHHHHHHhc
Q psy16850        125 NDSTLFTLG-----------KM-----IPYF---------TEL-------------IYFYRFLANTTDIIKEASKELQ  164 (174)
Q Consensus       125 N~~~i~aL~-----------~~-----~~g~---------~~s-------------~~~~~f~HNd~~~Le~~L~~~~  164 (174)
                      |.++|..+.           +.     ..++         .++             ..+..|+|||+++||++|++..
T Consensus       107 ~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  184 (401)
T TIGR01885       107 VETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHG  184 (401)
T ss_pred             HHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcC
Confidence            999999851           10     0111         110             1357899999999999998653

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.34  E-value=8.4e-12  Score=109.99  Aligned_cols=107  Identities=18%  Similarity=0.081  Sum_probs=85.1

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHc-CCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKF-GTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~-G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~  123 (174)
                      ..+|+++|||+|   |+|||.+ ||+|.+|+.+.++++ .++++      ..++.+.+||++|+++++.+.+++++||+.
T Consensus        31 d~dG~~ylD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~la~~L~~~~~~~~~~f~~SGse  103 (397)
T TIGR03246        31 DQQGKEYIDFAGGIAVNALGHA-HPELVKALIEQADKLWHIGNG------YTNEPVLRLAKKLVDATFADKVFFCNSGAE  103 (397)
T ss_pred             eCCCCEEEECCcCHhhccCCCC-CHHHHHHHHHHHHhcccccCc------cCCHHHHHHHHHHHhhCCCCEEEEeCCcHH
Confidence            358999999999   8999995 999999999999884 33332      246889999999999999999999999999


Q ss_pred             HHHHHHHHh---------ccc---------CCCCe-----eE-------------EEEEEecCCCHHHHHHHHH
Q psy16850        124 ANDSTLFTL---------GKM---------IPYFT-----EL-------------IYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       124 aN~~~i~aL---------~~~---------~~g~~-----~s-------------~~~~~f~HNd~~~Le~~L~  161 (174)
                      ||.++|...         .++         ..|..     ++             ..+..|+|||+++||+++.
T Consensus       104 A~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  177 (397)
T TIGR03246       104 ANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALIS  177 (397)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhc
Confidence            999999976         121         01110     00             1356899999999999985

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.31  E-value=2e-11  Score=106.88  Aligned_cols=130  Identities=14%  Similarity=0.038  Sum_probs=94.6

Q ss_pred             HHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCC---CccchHHHHHHHHHcCCCccccccccCCchHH
Q psy16850         23 KRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSC---HPKVKSAVREALEKFGTGAGGTRNISGNSLFH   99 (174)
Q Consensus        23 ~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~---~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~   99 (174)
                      ..++.++....+.+..+.+    .+..+|+++|+|+| +|++++.   ||+|.+++.+.+++++.++..+     .++.+
T Consensus        16 ~~~~~~~~~~~~~~~~G~~----~~d~~g~~~lD~~~-~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~-----~~~~~   85 (401)
T PRK00854         16 GAHNYKPLDVVLTRGEGVW----VWDTDGNRYLDCLS-AYSAVNQGHCHPKILAAMVEQAGRLTLTSRAF-----RNDQL   85 (401)
T ss_pred             hhcccCCCCceEEeeeeCE----EEECCCCEEEEcCc-chhhccCCCCCHHHHHHHHHHHhhcccccccc-----CCHHH
Confidence            3455555444444433221    22358999999866 4998886   9999999999999987654322     24789


Q ss_pred             HHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc-----------cc---------CCCCe------------------e
Q psy16850        100 EKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG-----------KM---------IPYFT------------------E  141 (174)
Q Consensus       100 ~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~-----------~~---------~~g~~------------------~  141 (174)
                      .+||++|++++|.+.+++++||+.||.++|.++.           +.         ..|..                  .
T Consensus        86 ~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~  165 (401)
T PRK00854         86 APLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPF  165 (401)
T ss_pred             HHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCC
Confidence            9999999999999999999999999999999883           10         01110                  0


Q ss_pred             EEEEEEecCCCHHHHHHHHHH
Q psy16850        142 LIYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       142 s~~~~~f~HNd~~~Le~~L~~  162 (174)
                      ...+..|+|||+++||+.+..
T Consensus       166 ~~~~~~~~~~d~~~le~~i~~  186 (401)
T PRK00854        166 TPGFRVVPFGDAEALEAAITP  186 (401)
T ss_pred             CCCeEEeCCCCHHHHHHHhCC
Confidence            024578899999999998853

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.26  E-value=4.9e-11  Score=103.92  Aligned_cols=97  Identities=16%  Similarity=0.077  Sum_probs=82.3

Q ss_pred             CCCCCccchHHHHHHHHHcCCCccccccccCCc-----hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCC
Q psy16850         64 GMSCHPKVKSAVREALEKFGTGAGGTRNISGNS-----LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPY  138 (174)
Q Consensus        64 GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~-----~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g  138 (174)
                      -|.....+++++++++++||+|+++||++.|+.     +.+.++++.||+|+|.+.++++++|+.+|.+++.+|.+  +|
T Consensus        13 ~~~~~g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~--~g   90 (370)
T TIGR02539        13 PLQRGGVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCK--EG   90 (370)
T ss_pred             hhhhCCCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhC--CC
Confidence            355577899999999999999999999998877     36667777799999999999999999999999999975  33


Q ss_pred             CeeE-----------------EEEEEecCC-------CHHHHHHHHHH
Q psy16850        139 FTEL-----------------IYFYRFLAN-------TTDIIKEASKE  162 (174)
Q Consensus       139 ~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~  162 (174)
                      +.+.                 +.++.|+||       |+++|++.|++
T Consensus        91 d~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  138 (370)
T TIGR02539        91 DWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEE  138 (370)
T ss_pred             CEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHH
Confidence            3221                 478899998       99999999975

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.24  E-value=3.5e-11  Score=109.38  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=86.7

Q ss_pred             ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH-----HHHHHhCCCcEEEe----cchhHHHHH
Q psy16850         58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE-----DVARLHQKEAGLVF----TSCYVANDS  127 (174)
Q Consensus        58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~-----~lA~~~g~e~al~f----~sGy~aN~~  127 (174)
                      +|-||.    +|.+++++..++ .+||.|+.|+|.++|+. .|++||+     .++.|.+.+++++|    +|||+||++
T Consensus        41 asen~~----s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~-~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~a  115 (475)
T PLN03226         41 ASENFT----SRAVMEALGSCLTNKYSEGLPGARYYGGNE-YIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFA  115 (475)
T ss_pred             cCCccC----CHHHHHHHhhHHhccccCCCCCCcCcCCCh-hHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHH
Confidence            677776    677999999999 99999999999999987 9999998     88888888888888    999999999


Q ss_pred             HHHHhccc--------------------CCCCeeE-E----EEEEecCC------CHHHHHHHHHHhccccc
Q psy16850        128 TLFTLGKM--------------------IPYFTEL-I----YFYRFLAN------TTDIIKEASKELQEDMI  168 (174)
Q Consensus       128 ~i~aL~~~--------------------~~g~~~s-~----~~~~f~HN------d~~~Le~~L~~~~~~~~  168 (174)
                      ++.+|++.                    .+|++++ +    .+.+|+||      |+++||+++++..+..|
T Consensus       116 v~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklI  187 (475)
T PLN03226        116 VYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLI  187 (475)
T ss_pred             HHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEE
Confidence            99999872                    1122222 1    23489999      99999999987655433

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.16  E-value=2.2e-10  Score=100.87  Aligned_cols=109  Identities=18%  Similarity=0.120  Sum_probs=85.7

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|||+|+   +|||. .||+|.+++.+.+++++..    ..+ ..++.+.+|+++|+++++.+.+++++||+.|
T Consensus        36 d~dG~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~----~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA  109 (403)
T PRK05093         36 DQQGKEYIDFAGGIAVTALGH-CHPALVKALKEQGEKLWHI----SNV-FTNEPALRLAKKLIDATFAERVFFANSGAEA  109 (403)
T ss_pred             eCCCCEEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcCcc----cCc-cCCHHHHHHHHHHHhhCCCCEEEEeCchHHH
Confidence            4789999999995   99999 8999999999999875421    123 3567789999999999998999999999999


Q ss_pred             HHHHHHHh---------ccc---------CCCCe-----------------eE-EEEEEecCCCHHHHHHHHHH
Q psy16850        125 NDSTLFTL---------GKM---------IPYFT-----------------EL-IYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       125 N~~~i~aL---------~~~---------~~g~~-----------------~s-~~~~~f~HNd~~~Le~~L~~  162 (174)
                      |.+.+...         .+.         ..|..                 .. ..+..|+|||+++||+.+..
T Consensus       110 ~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  183 (403)
T PRK05093        110 NEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDD  183 (403)
T ss_pred             HHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHhcC
Confidence            99999964         111         11111                 11 24678999999999998853

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.14  E-value=2.6e-10  Score=99.35  Aligned_cols=109  Identities=17%  Similarity=0.058  Sum_probs=86.2

Q ss_pred             cCCeeEEEecc-CcccCCC-CCccchHHHHHHHHHcCCCcccccccc--CCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         49 DSEKEVTVYCS-NDYLGMS-CHPKVKSAVREALEKFGTGAGGTRNIS--GNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        49 ~~g~~~inf~S-ndYLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~--G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      .+|+++|||+| |+|++|. .||+|++++.+++++.      ++...  |..+.+.+|++.|++++|  .+.+++++||+
T Consensus        33 ~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgs  106 (413)
T cd00610          33 VDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL------THFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGT  106 (413)
T ss_pred             CCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC------cCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHH
Confidence            58999999999 6788887 7999999999998653      23333  368999999999999999  88999999999


Q ss_pred             HHHHHHHHHhcc---c------CCCCee--------E-------------EEEEEecCC-----------CHHHHHHHHH
Q psy16850        123 VANDSTLFTLGK---M------IPYFTE--------L-------------IYFYRFLAN-----------TTDIIKEASK  161 (174)
Q Consensus       123 ~aN~~~i~aL~~---~------~~g~~~--------s-------------~~~~~f~HN-----------d~~~Le~~L~  161 (174)
                      .||.+++.++..   .      .++.|-        +             ..+..++||           |+++|++.++
T Consensus       107 ea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  186 (413)
T cd00610         107 EAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALE  186 (413)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHh
Confidence            999999997732   1      011111        0             136789999           9999999998


Q ss_pred             Hh
Q psy16850        162 EL  163 (174)
Q Consensus       162 ~~  163 (174)
                      +.
T Consensus       187 ~~  188 (413)
T cd00610         187 EH  188 (413)
T ss_pred             cC
Confidence            74

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.13  E-value=3.8e-10  Score=97.46  Aligned_cols=78  Identities=24%  Similarity=0.227  Sum_probs=68.5

Q ss_pred             cCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         49 DSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        49 ~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      .+|+++|||+|   |+|||+ .+|.|.+++.+++++++..   ++.  +..+.+.+||++|++++|.+.+++++||+.||
T Consensus        24 ~~g~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~--~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~   97 (379)
T TIGR00707        24 VNGKEYLDFVAGIAVNSLGH-AHPKLVEALKEQLEKLVHV---SNL--YYTEPQEELAEKLVEHSGADRVFFCNSGAEAN   97 (379)
T ss_pred             CCCCEEEEcCcchhhccCCC-CCHHHHHHHHHHHhhcccc---ccc--cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHH
Confidence            57999999999   899998 6899999999999987642   233  24688999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy16850        126 DSTLFTL  132 (174)
Q Consensus       126 ~~~i~aL  132 (174)
                      ..++.++
T Consensus        98 ~~a~~~~  104 (379)
T TIGR00707        98 EAALKLA  104 (379)
T ss_pred             HHHHHHH
Confidence            9999876

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.03  E-value=1.8e-09  Score=95.55  Aligned_cols=107  Identities=18%  Similarity=0.093  Sum_probs=84.2

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcC-CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFG-TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G-~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~  123 (174)
                      ..+|+++|||.|   |+|||.+ ||+|.+|+.+.++++. ++.   .   ..++.+.+|+++|+++++.+.+++++||+.
T Consensus        35 d~dG~~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~---~---~~~~~~~~la~~l~~~~~~~~v~~~~sGse  107 (406)
T PRK12381         35 DQQGKEYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGN---G---YTNEPVLRLAKKLIDATFADRVFFCNSGAE  107 (406)
T ss_pred             eCCCCEEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccC---c---cCCHHHHHHHHHHHhhCCCCeEEEcCCcHH
Confidence            468999999999   7999999 9999999999998753 321   1   246789999999999999999999999999


Q ss_pred             HHHHHHHHhc---------cc---------CCCCe-----eE-------------EEEEEecCCCHHHHHHHHH
Q psy16850        124 ANDSTLFTLG---------KM---------IPYFT-----EL-------------IYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       124 aN~~~i~aL~---------~~---------~~g~~-----~s-------------~~~~~f~HNd~~~Le~~L~  161 (174)
                      ||.++|...-         +.         ..|..     ++             ..+..++|||+++||+.+.
T Consensus       108 A~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  181 (406)
T PRK12381        108 ANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALID  181 (406)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhcc
Confidence            9999999742         10         01110     00             1256789999999999885

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.03  E-value=2.6e-09  Score=92.75  Aligned_cols=109  Identities=21%  Similarity=0.170  Sum_probs=82.7

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|||+||+   |||. .||+|++|+.+++++++..   ++.  +..++..+|++.|++..+.+.+++++||+.|
T Consensus        25 d~~G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~--~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a   98 (377)
T PRK02936         25 DNNGKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIWHV---SNL--FTNSLQEEVASLLAENSAGDLVFFCNSGAEA   98 (377)
T ss_pred             eCCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcccc---ccc--cCCHHHHHHHHHHHhcCCCCEEEEeCCcHHH
Confidence            47899999999999   9997 8999999999999886421   222  3467788888888887777889999999999


Q ss_pred             HHHHHHHhc---cc---------CCCC-----eeE-------------EEEEEecCCCHHHHHHHHHH
Q psy16850        125 NDSTLFTLG---KM---------IPYF-----TEL-------------IYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       125 N~~~i~aL~---~~---------~~g~-----~~s-------------~~~~~f~HNd~~~Le~~L~~  162 (174)
                      |.+++....   +.         ..|.     .++             ..+..++|||+++||+.+..
T Consensus        99 ~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~  166 (377)
T PRK02936         99 NEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE  166 (377)
T ss_pred             HHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC
Confidence            999998531   21         1111     111             13457899999999998863

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=98.98  E-value=3.2e-09  Score=92.75  Aligned_cols=78  Identities=19%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcC-CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFG-TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G-~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~  123 (174)
                      ..+|+++|||+|   |+|||. .||+|.+|+.+.+++.. .+    ..  .+++.+.+|+++|+++.+.+.+++++||+.
T Consensus        27 d~dG~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~----~~--~~~~~~~~la~~l~~~~~~~~v~~~~sGse   99 (389)
T PRK01278         27 DEDGERYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLWHVS----NL--YRIPEQERLAERLVENSFADKVFFTNSGAE   99 (389)
T ss_pred             ECCCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhcCccc----cc--cCChHHHHHHHHHHhhCCCCEEEEcCCcHH
Confidence            478999999999   789999 79999999999998733 22    12  367899999999999998899999999999


Q ss_pred             HHHHHHHHh
Q psy16850        124 ANDSTLFTL  132 (174)
Q Consensus       124 aN~~~i~aL  132 (174)
                      ||..+|.++
T Consensus       100 A~~~al~~a  108 (389)
T PRK01278        100 AVECAIKTA  108 (389)
T ss_pred             HHHHHHHHH
Confidence            999999877

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=98.97  E-value=1.9e-09  Score=94.20  Aligned_cols=78  Identities=21%  Similarity=0.219  Sum_probs=68.6

Q ss_pred             cCCeeEEEeccCcccCCC---CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         49 DSEKEVTVYCSNDYLGMS---CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~---~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      .+|+++|+|+| +|+++.   .||+|++++.+.+++++.++   +.+  ..+.+.++|+.|+++++.+.+++++||+.||
T Consensus        28 ~dg~~~lD~~~-~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~  101 (400)
T PTZ00125         28 VEGKKYYDFLS-AYSAVNQGHCHPKILAALINQAQKLTLTS---RAF--YNDVLGLAEKYITDLFGYDKVLPMNSGAEAG  101 (400)
T ss_pred             CCCCEEEEccc-CHhhccCCcCCHHHHHHHHHHHHhccccc---ccc--cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHH
Confidence            58999999999 499988   69999999999998887543   333  3579999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy16850        126 DSTLFTL  132 (174)
Q Consensus       126 ~~~i~aL  132 (174)
                      .++|..+
T Consensus       102 e~al~~~  108 (400)
T PTZ00125        102 ETALKFA  108 (400)
T ss_pred             HHHHHHH
Confidence            9999976

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=98.82  E-value=1e-08  Score=87.80  Aligned_cols=112  Identities=24%  Similarity=0.149  Sum_probs=89.4

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecchhHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTSCYVA  124 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~sGy~a  124 (174)
                      ++|||++|+|+++..+|.+.++..++.+  +....++...++...-+.+|++.||+|++        .+..+++++|..+
T Consensus         2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~   79 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPPPPAAIKAAIR--GAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA   79 (363)
T ss_dssp             TEEESSSSSTSSTTSSHHHHHHHHHHHH--HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred             CEEEEECCCCCCcccccchHHHHHHHHH--HhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence            4899999999999999877777776665  55566667778888889999999999999        5558999999999


Q ss_pred             HHHHHHHhcccCCCCeeE-----------------EEEEEec-------CCCHHHHHHHHHHhccc
Q psy16850        125 NDSTLFTLGKMIPYFTEL-----------------IYFYRFL-------ANTTDIIKEASKELQED  166 (174)
Q Consensus       125 N~~~i~aL~~~~~g~~~s-----------------~~~~~f~-------HNd~~~Le~~L~~~~~~  166 (174)
                      ++.++..+....+|+...                 +.++.|+       |+|+++|++.+++..+.
T Consensus        80 ~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~  145 (363)
T PF00155_consen   80 ALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSK  145 (363)
T ss_dssp             HHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTT
T ss_pred             chhhhhhcccccccccceecCCccccccccccccCceeeecccccccccccccccccccccccccc
Confidence            999988777322343332                 3567777       99999999999997554

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=98.81  E-value=4.6e-08  Score=85.63  Aligned_cols=108  Identities=19%  Similarity=0.047  Sum_probs=83.1

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG  121 (174)
                      ..+|+++|+|+|   ++|||. .||+|.+++.+++++++..+  .+  + ..+...+|++.|+++++.   +.+++++||
T Consensus        39 d~dg~~~lD~~s~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~--~~--~-~~~~~~~la~~l~~~~~~~~~~~v~~~~sg  112 (398)
T PRK03244         39 DVDGKEYLDLLGGIAVNALGH-AHPAVVEAVTRQLATLGHVS--NL--F-ATEPQIALAERLVELLGAPEGGRVFFCNSG  112 (398)
T ss_pred             ECCCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccCcc--Cc--c-CCHHHHHHHHHHHHhCCCCCCCEEEEeCch
Confidence            368999999999   899998 59999999999999987542  22  2 356778999999999985   478899999


Q ss_pred             hHHHHHHHHHhccc-----------CCCCe-----e-------------EEEEEEecCCCHHHHHHHHH
Q psy16850        122 YVANDSTLFTLGKM-----------IPYFT-----E-------------LIYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       122 y~aN~~~i~aL~~~-----------~~g~~-----~-------------s~~~~~f~HNd~~~Le~~L~  161 (174)
                      ..||.+++.++...           ..|..     +             ...+..++|||+++||+.+.
T Consensus       113 sea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~  181 (398)
T PRK03244        113 AEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD  181 (398)
T ss_pred             HHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc
Confidence            99999999855421           01110     0             01356788999999999884

>PLN02624 ornithine-delta-aminotransferase

Probab=98.78  E-value=1.6e-07  Score=85.21  Aligned_cols=77  Identities=16%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             ecCCeeEEEeccCcccCCCC---CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSNDYLGMSC---HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~SndYLGL~~---~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|+|+|+ |.++..   ||+|.+|+.+.+++++.++.  +.   .++.+.+|+++|+++++.+.+++++||+.|
T Consensus        71 d~dG~~ylD~~sg-~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~--~~---~~~~~~~la~~L~~~~~~~~~~f~~SGseA  144 (474)
T PLN02624         71 DPEGKKYLDFLSA-YSAVNQGHCHPKIIKALTEQAEKLTLSSR--AF---YNDKFPEFAEYLTSMFGYDMVLPMNTGAEG  144 (474)
T ss_pred             ECCCCEEEEcccc-hhcccCCCCCHHHHHHHHHHHHhcCCccc--cc---CCHHHHHHHHHHHhhcCCCeEEEeCChHHH
Confidence            4689999999995 888876   99999999999999875542  33   358899999999999999999999999999


Q ss_pred             HHHHHH
Q psy16850        125 NDSTLF  130 (174)
Q Consensus       125 N~~~i~  130 (174)
                      |-+.|.
T Consensus       145 ~e~Alk  150 (474)
T PLN02624        145 VETAIK  150 (474)
T ss_pred             HHHHHH
Confidence            999996

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=98.71  E-value=1.7e-07  Score=82.38  Aligned_cols=80  Identities=19%  Similarity=0.153  Sum_probs=64.9

Q ss_pred             ecCCeeEEEeccCcc-cCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         48 TDSEKEVTVYCSNDY-LGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        48 ~~~g~~~inf~SndY-LGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      ..+|+++|+|.|.-. +.|. .||+|.+|+.+.+++++.++   +.+  .++.+.+||++|+++.+.+.+++++||+.||
T Consensus        36 d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~---~~~--~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~  110 (396)
T PRK04073         36 DPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTS---RAF--HSDQLGPWYEKVAKLTGKDMVLPMNTGAEAV  110 (396)
T ss_pred             ECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccc---ccc--CCHHHHHHHHHHHhcCCCCeEEEcCChHHHH
Confidence            367889999876622 1233 39999999999999987643   222  5688999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy16850        126 DSTLFTL  132 (174)
Q Consensus       126 ~~~i~aL  132 (174)
                      .++|...
T Consensus       111 e~Alk~a  117 (396)
T PRK04073        111 ETAIKAA  117 (396)
T ss_pred             HHHHHHH
Confidence            9999876

>PRK12403 putative aminotransferase; Provisional

Probab=98.55  E-value=3.5e-07  Score=82.77  Aligned_cols=82  Identities=16%  Similarity=0.038  Sum_probs=68.4

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|||.|.   .-||. .||+|.+|+.+.+++++.+   ++...+.++.+.+|+++|+++++  .+.+++++||+
T Consensus        50 D~dG~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~~---~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  125 (460)
T PRK12403         50 DNDGKRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPYY---NMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGS  125 (460)
T ss_pred             eCCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCCe---ecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence            4689999996432   23999 5799999999999997754   34556788999999999999997  57899999999


Q ss_pred             HHHHHHHHHhc
Q psy16850        123 VANDSTLFTLG  133 (174)
Q Consensus       123 ~aN~~~i~aL~  133 (174)
                      .||-+.|....
T Consensus       126 eA~e~AiklAr  136 (460)
T PRK12403        126 EANEVLIRTVR  136 (460)
T ss_pred             HHHHHHHHHHH
Confidence            99999998763

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=98.54  E-value=7.7e-07  Score=77.41  Aligned_cols=80  Identities=24%  Similarity=0.263  Sum_probs=67.9

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|+|+|   +++||. .||+|.+++.+.+++....   +.  .+..+...+|++.|+++.|.+.+++++||..|
T Consensus        35 d~dg~~~iD~~~g~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~--~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA  108 (396)
T PRK02627         35 DDDGKEYLDFLAGIAVNNLGH-CHPKLVEAIQEQAAKLIHT---SN--LYYIEPQEELAEKLVELSGMDKVFFCNSGAEA  108 (396)
T ss_pred             eCCCCEEEECCccHHhccCCC-CCHHHHHHHHHHHhhcccc---cc--ccCCHHHHHHHHHHHhhcCCCEEEECCCcHHH
Confidence            368999999998   899999 5899999999998875321   22  23578999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy16850        125 NDSTLFTLG  133 (174)
Q Consensus       125 N~~~i~aL~  133 (174)
                      |..++.++.
T Consensus       109 ~~~al~~a~  117 (396)
T PRK02627        109 NEAAIKLAR  117 (396)
T ss_pred             HHHHHHHHH
Confidence            999998654

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=98.54  E-value=5e-07  Score=78.69  Aligned_cols=76  Identities=18%  Similarity=0.260  Sum_probs=61.4

Q ss_pred             ecCCeeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCc--EEEecchhH
Q psy16850         48 TDSEKEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEA--GLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~--al~f~sGy~  123 (174)
                      ..+|+++|||.|+ .|++|.+||+|++|+.+++++++...         ...+.++++++|+.+ +.++  +++++||+.
T Consensus        25 d~dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~~~~---------~~~~~~~~~~la~~l~~~~~~~~~~~~SGse   95 (375)
T PRK04260         25 DTDGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIWHSP---------NLYLNSLQEEVAQKLIGDKDYLAFFCNSGAE   95 (375)
T ss_pred             eCCCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcCccc---------CccCCHHHHHHHHHHhcCcCCEEEEcCccHH
Confidence            3689999999998 69999999999999999998865321         124677888999876 3333  678899999


Q ss_pred             HHHHHHHHh
Q psy16850        124 ANDSTLFTL  132 (174)
Q Consensus       124 aN~~~i~aL  132 (174)
                      ||.++|...
T Consensus        96 A~~~Al~~a  104 (375)
T PRK04260         96 ANEAAIKIA  104 (375)
T ss_pred             HHHHHHHHH
Confidence            999999876

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=98.53  E-value=8.2e-07  Score=77.96  Aligned_cols=91  Identities=16%  Similarity=0.101  Sum_probs=72.6

Q ss_pred             chHHHHHHHHHcCCCcccc-----ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---
Q psy16850         71 VKSAVREALEKFGTGAGGT-----RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---  142 (174)
Q Consensus        71 v~~a~~~al~~~G~gs~~S-----r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---  142 (174)
                      +.+++.+++.+|+.+.++|     +...+..+.++++|+.+|+|+|.+.++++++|+.+|..++.++.+  +|.++.   
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~--~gd~Vlv~~  109 (387)
T PRK09331         32 LTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCK--KGDYVVLDG  109 (387)
T ss_pred             CCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcC--CCCEEEECC
Confidence            5667777777787665544     666777889999999999999999999999999999999999975  343322   


Q ss_pred             --------------EEEEEecC-------CCHHHHHHHHHHh
Q psy16850        143 --------------IYFYRFLA-------NTTDIIKEASKEL  163 (174)
Q Consensus       143 --------------~~~~~f~H-------Nd~~~Le~~L~~~  163 (174)
                                    +.++.+++       .|+++|++.|++.
T Consensus       110 ~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  151 (387)
T PRK09331        110 LAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEV  151 (387)
T ss_pred             CchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHh
Confidence                          36667766       6899999999864

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=98.51  E-value=2.3e-07  Score=82.31  Aligned_cols=76  Identities=17%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecc
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTS  120 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~s  120 (174)
                      ..+|+++|+|+|   |+|||.+ ||+|.+|+.+.+++...++         ...+.++|.+||++++    .+.+++++|
T Consensus        32 d~dG~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~~~---------~~~~~~~~~~la~~l~~~~~~~~v~f~~S  101 (395)
T PRK03715         32 DHNGKRYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLINPS---------PAFYNEPMAKLAGLLTQHSCFDKVFFANS  101 (395)
T ss_pred             ECCCCEEEECCcChhhccCCCC-CHHHHHHHHHHHHhccccc---------ccccCHHHHHHHHHHhhccCCCEEEEeCC
Confidence            358999999997   9999999 6999999999887644321         1223445555555554    568999999


Q ss_pred             hhHHHHHHHHHhc
Q psy16850        121 CYVANDSTLFTLG  133 (174)
Q Consensus       121 Gy~aN~~~i~aL~  133 (174)
                      |+.||.++|....
T Consensus       102 GseA~e~Aik~ar  114 (395)
T PRK03715        102 GAEANEGAIKLAR  114 (395)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999999874

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=98.50  E-value=5.4e-07  Score=80.48  Aligned_cols=79  Identities=27%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEe-cchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVF-TSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f-~sGy  122 (174)
                      ..+|+++|||+|+   .+|| ..||+|.+|+.+.+++++.++++++    .++.+.+|+++|++++ +..+.++| +||+
T Consensus        39 d~dG~~ylD~~~g~~~~~lG-h~~p~v~~a~~~q~~~~~~~~~~~~----~~~~~~~la~~L~~~~~~~~~~v~f~~SGs  113 (433)
T PRK08117         39 GVDGKEYLDFTSGIAVANVG-HRHPKVVQAIKEQADKLMHGPSGVI----YYESILKLAEELAEITPGGLDCFFFSNSGA  113 (433)
T ss_pred             eCCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHHhccCcccccc----CCHHHHHHHHHHHHhCCCCCCEEEEeCcHH
Confidence            4789999999876   5688 5699999999999999877665543    4688999999999999 44456666 8999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||.+.|..
T Consensus       114 eA~e~Alkl  122 (433)
T PRK08117        114 EAIEGALKL  122 (433)
T ss_pred             HHHHHHHHH
Confidence            999999985

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=98.49  E-value=7.7e-07  Score=77.66  Aligned_cols=110  Identities=21%  Similarity=0.309  Sum_probs=80.5

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-EEecchhHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-LVFTSCYVAN  125 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-l~f~sGy~aN  125 (174)
                      +.+..++|++|+    +|++++++.+.+ .+|+.|..++|...|.. ...++|+    .+++++|.+.+ ++++||+.|+
T Consensus        20 ~~~~~~~~~~~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~   94 (402)
T cd00378          20 ETLELIASENFT----SPAVMEAMGSDLTNKYAEGYPGKRYYGGCE-YVDEIEDLAIERAKKLFGAEYANVQPHSGSQAN   94 (402)
T ss_pred             hCeeeeccCCcC----CHHHHHHhcccccccccCCCCCCcccCCch-HHHHHHHHHHHHHHHHhCCCceeeecCCcHHHH
Confidence            345567899998    999999998775 78999999999987754 3344443    56799999877 4557899999


Q ss_pred             HHHHHHhcccCCCCeeE------------------------EEEEEecCC------CHHHHHHHHHHhccccc
Q psy16850        126 DSTLFTLGKMIPYFTEL------------------------IYFYRFLAN------TTDIIKEASKELQEDMI  168 (174)
Q Consensus       126 ~~~i~aL~~~~~g~~~s------------------------~~~~~f~HN------d~~~Le~~L~~~~~~~~  168 (174)
                      ..++.+|.+  +|.+..                        .....++++      |+++|++.+.+..+..|
T Consensus        95 ~~~l~~l~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v  165 (402)
T cd00378          95 LAVYFALLE--PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLI  165 (402)
T ss_pred             HHHHHHhcC--CCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEE
Confidence            999999976  343321                        123456676      89999999875444433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.48  E-value=2.6e-06  Score=76.03  Aligned_cols=107  Identities=23%  Similarity=0.129  Sum_probs=81.7

Q ss_pred             cCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhHH
Q psy16850         49 DSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYVA  124 (174)
Q Consensus        49 ~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~a  124 (174)
                      .+|+++|||+|+   .+||. .||+|.+++.+.+++ +.+.      ....+...+|-++|++.+ +.+.+++++||+.|
T Consensus        47 ~dG~~~lD~~~g~~~~~lGh-~~p~i~~a~~~~~~~-~~~~------~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA  118 (426)
T PRK00062         47 VDGNEYIDYVGSWGPMILGH-AHPEVVEAVIEAAEK-GLSF------GAPTELEVELAELVIELVPSIEMVRMVNSGTEA  118 (426)
T ss_pred             CCCCEEEEcccchhhhhcCC-CCHHHHHHHHHHHHh-CCcC------CCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHH
Confidence            689999999997   79999 799999999999987 4321      224567778888888876 57789999999999


Q ss_pred             HHHHHHHhcc---c---------CCCCe-----------------eE--------EEEEEecCCCHHHHHHHHHHh
Q psy16850        125 NDSTLFTLGK---M---------IPYFT-----------------EL--------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       125 N~~~i~aL~~---~---------~~g~~-----------------~s--------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      |.++|.....   .         ..|..                 ..        ..+.+|+|||+++||+++.+.
T Consensus       119 ~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~  194 (426)
T PRK00062        119 TMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEY  194 (426)
T ss_pred             HHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhC
Confidence            9999987331   1         11211                 00        135789999999999999763

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=98.44  E-value=7.4e-07  Score=81.78  Aligned_cols=81  Identities=16%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-C--CcEEEecch
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-K--EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-~--e~al~f~sG  121 (174)
                      ..+|+++|||.|   |++|| ..||+|.+|+.+.+++++..++   ...++++++.+|+++|++.+. .  +.+.+++||
T Consensus        85 D~dG~~ylD~~sg~~~~~lG-h~hp~v~~Av~~ql~~~~~~~~---~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SG  160 (504)
T PLN02760         85 DINGKKYLDALAGLWCTALG-GSEPRLVAAATEQLNKLPFYHS---FWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSG  160 (504)
T ss_pred             ECCCCEEEEcCcCHHhcccC-CCCHHHHHHHHHHHhhccceec---ccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCCh
Confidence            468999999999   89999 8899999999999998765432   345678999999999999853 2  457889999


Q ss_pred             hHHHHHHHHHh
Q psy16850        122 YVANDSTLFTL  132 (174)
Q Consensus       122 y~aN~~~i~aL  132 (174)
                      +.||-+.|...
T Consensus       161 sEA~e~AlKlA  171 (504)
T PLN02760        161 SEANDTQVKLV  171 (504)
T ss_pred             HHHHHHHHHHH
Confidence            99999999976

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=98.39  E-value=3.7e-06  Score=72.70  Aligned_cols=94  Identities=14%  Similarity=0.066  Sum_probs=74.1

Q ss_pred             CCccchHHHHHHHHHcCCCccccccccCCc-----hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee
Q psy16850         67 CHPKVKSAVREALEKFGTGAGGTRNISGNS-----LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~-----~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~  141 (174)
                      ....+.+++.+++.+||.|+++|+...|..     +.+.+||+.+|+++|.+.++++++|..++..++.++.+  +|..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~--~gd~V   86 (361)
T cd06452           9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCE--KGDWV   86 (361)
T ss_pred             cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcC--CCCEE
Confidence            355688999999999999999998866544     67999999999999999999999999999999999865  33322


Q ss_pred             E-----------------EEEEEec-------CCCHHHHHHHHHH
Q psy16850        142 L-----------------IYFYRFL-------ANTTDIIKEASKE  162 (174)
Q Consensus       142 s-----------------~~~~~f~-------HNd~~~Le~~L~~  162 (174)
                      .                 +.++.++       +-|+++|++.+.+
T Consensus        87 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  131 (361)
T cd06452          87 VVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEE  131 (361)
T ss_pred             EEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHH
Confidence            1                 2333332       4589999998875

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=98.32  E-value=4.1e-06  Score=70.89  Aligned_cols=95  Identities=22%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             EeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc
Q psy16850         56 VYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM  135 (174)
Q Consensus        56 nf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~  135 (174)
                      +|+|+|++|  -+|++++++.+++...        ..+|....+++||+.+|+++|.+.++++++|..+|..++.++.+.
T Consensus         1 ~~~~~~~~~--~~~~v~~a~~~~~~~~--------~~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~   70 (338)
T cd06502           1 DFRSDTVTG--PTPEMLEAMAAANVGD--------DVYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQP   70 (338)
T ss_pred             CcccccCCC--CCHHHHHHHHhcccCC--------cccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCC
Confidence            599999999  5688888887765221        134556789999999999999889999999999999999998762


Q ss_pred             CCCCee--------------------EEEEEEecC----CCHHHHHHHHHH
Q psy16850        136 IPYFTE--------------------LIYFYRFLA----NTTDIIKEASKE  162 (174)
Q Consensus       136 ~~g~~~--------------------s~~~~~f~H----Nd~~~Le~~L~~  162 (174)
                        |..+                    .++++.+++    .|+++|++.+.+
T Consensus        71 --gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~  119 (338)
T cd06502          71 --GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRP  119 (338)
T ss_pred             --CCeEEEecCcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhc
Confidence              2211                    134556655    678999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=98.30  E-value=4.1e-06  Score=73.71  Aligned_cols=104  Identities=23%  Similarity=0.258  Sum_probs=78.1

Q ss_pred             EeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-EEecchhHHHHHHH
Q psy16850         56 VYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-LVFTSCYVANDSTL  129 (174)
Q Consensus        56 nf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-l~f~sGy~aN~~~i  129 (174)
                      .++++||+    +|+|++++.+.+ ..|+.|..+|+...|. ..++++|+    .+|+++|.+.+ ++++||+.|+..++
T Consensus        30 l~~~~n~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l  104 (416)
T PRK00011         30 LIASENFV----SPAVMEAQGSVLTNKYAEGYPGKRYYGGC-EYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVY  104 (416)
T ss_pred             eecccCcC----CHHHHHHHhchhhcccccCCCCccccccc-hHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHH
Confidence            45667773    899999987775 5789999999988875 45888888    89999999988 66789999999999


Q ss_pred             HHhcccCCCCeeE----------------------EEEEEec------CCCHHHHHHHHHHhccc
Q psy16850        130 FTLGKMIPYFTEL----------------------IYFYRFL------ANTTDIIKEASKELQED  166 (174)
Q Consensus       130 ~aL~~~~~g~~~s----------------------~~~~~f~------HNd~~~Le~~L~~~~~~  166 (174)
                      .+|.+  +|++..                      +.++.++      +.|+++|++.+++....
T Consensus       105 ~~l~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k  167 (416)
T PRK00011        105 FALLK--PGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPK  167 (416)
T ss_pred             HHhcC--CCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCC
Confidence            99975  332211                      2333333      56899999999764333

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=98.18  E-value=6.5e-06  Score=74.82  Aligned_cols=98  Identities=18%  Similarity=0.039  Sum_probs=68.0

Q ss_pred             cCCCC-CccchHHHHHHHHHcCCCccccccccC-CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc-----
Q psy16850         63 LGMSC-HPKVKSAVREALEKFGTGAGGTRNISG-NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM-----  135 (174)
Q Consensus        63 LGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G-~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~-----  135 (174)
                      +|-+. ++++++++.++++.|+.-..  .+..| ....+.++|+.||+++|.|+|++|+||+.|+..++.++...     
T Consensus        88 lg~s~l~~~vieAv~~~~~~y~~l~~--~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~~GdeVIv  165 (454)
T TIGR00474        88 LGRAPLAEEAIEAVTDAARGYSNLEY--DLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLAKGKEVIV  165 (454)
T ss_pred             CCCCCCCHHHHHHHHHHHhcccchhc--cccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCcCEEEE
Confidence            67776 88999999999988762100  00000 12458999999999999999999999999999999887541     


Q ss_pred             CCCC--------------eeE-EEEEEecCC---CHHHHHHHHHH
Q psy16850        136 IPYF--------------TEL-IYFYRFLAN---TTDIIKEASKE  162 (174)
Q Consensus       136 ~~g~--------------~~s-~~~~~f~HN---d~~~Le~~L~~  162 (174)
                      -++.              +.+ +.++.+.|+   |++++++.+..
T Consensus       166 s~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~aI~~  210 (454)
T TIGR00474       166 SRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYEDAITE  210 (454)
T ss_pred             CCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHHhcCc
Confidence            1111              111 567778884   55666666543

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=98.17  E-value=1.7e-05  Score=69.36  Aligned_cols=73  Identities=23%  Similarity=0.122  Sum_probs=58.7

Q ss_pred             ccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee---------------------EEEEE
Q psy16850         88 GTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE---------------------LIYFY  146 (174)
Q Consensus        88 ~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~---------------------s~~~~  146 (174)
                      +........+.+.+||+.||+++|.++|++|+||+.||..++.++.+  +|++.                     .+.+.
T Consensus        31 ~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~--~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~  108 (369)
T cd00614          31 GYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLK--AGDHVVASDDLYGGTYRLFERLLPKLGIEVT  108 (369)
T ss_pred             CceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcC--CCCEEEECCCCcchHHHHHHHHHhhcCeEEE
Confidence            33333346789999999999999999999999999999999999875  23321                     14677


Q ss_pred             EecCCCHHHHHHHHHH
Q psy16850        147 RFLANTTDIIKEASKE  162 (174)
Q Consensus       147 ~f~HNd~~~Le~~L~~  162 (174)
                      .+.++|+++|++.++.
T Consensus       109 ~v~~~d~~~l~~~i~~  124 (369)
T cd00614         109 FVDPDDPEALEAAIKP  124 (369)
T ss_pred             EeCCCCHHHHHHhcCC
Confidence            8899999999998864

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=98.11  E-value=1.3e-05  Score=72.15  Aligned_cols=102  Identities=19%  Similarity=0.229  Sum_probs=77.2

Q ss_pred             eccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-----EEecchhHHHH
Q psy16850         57 YCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-----LVFTSCYVAND  126 (174)
Q Consensus        57 f~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-----l~f~sGy~aN~  126 (174)
                      .+|.||+    +|.++++....+ .+|+.|..|||...|.... +++|+    .+|++||.+..     +.++||+.||.
T Consensus        40 ~~sen~~----s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~-~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~  114 (452)
T PTZ00094         40 IASENFT----SRAVLECLGSCFTNKYAEGLPGNRYYGGNEVV-DKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANF  114 (452)
T ss_pred             ecccccC----CHHHHHHhcchhhccccCCCCCccccccchHH-HHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHH
Confidence            3677776    688999998877 6798899999998887544 88884    89999997642     33468999999


Q ss_pred             HHHHHhcccCCCCeeE---------------------------EEEEEecCC-----CHHHHHHHHHHhcc
Q psy16850        127 STLFTLGKMIPYFTEL---------------------------IYFYRFLAN-----TTDIIKEASKELQE  165 (174)
Q Consensus       127 ~~i~aL~~~~~g~~~s---------------------------~~~~~f~HN-----d~~~Le~~L~~~~~  165 (174)
                      +++.+|.+  +|++..                           ..+..|+||     |+++|++++++..+
T Consensus       115 ~v~~al~~--~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~  183 (452)
T PTZ00094        115 AVYTALLQ--PHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRP  183 (452)
T ss_pred             HHHHHhcC--CCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCC
Confidence            99999975  333221                           123467777     99999999976544

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.90  E-value=7.9e-05  Score=64.03  Aligned_cols=91  Identities=23%  Similarity=0.123  Sum_probs=65.6

Q ss_pred             CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCC------e
Q psy16850         67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYF------T  140 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~------~  140 (174)
                      -+|++.++..++.    .|-   - .+|..+...+||+.+++++|+|.+++++||.+||+..|.+++...+++      |
T Consensus         7 ~~~~m~~a~~~a~----~gd---~-~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aH   78 (290)
T PF01212_consen    7 PTPAMLEAMAAAN----VGD---D-AYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAH   78 (290)
T ss_dssp             S-HHEEHHHHHTT----SB----C-CTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEH
T ss_pred             CCHHHHHHHHccc----cCC---c-ccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccce
Confidence            7999999985542    222   2 488999999999999999999999999999999999999998521110      0


Q ss_pred             e-----------E-EEEEE--e---cCCCHHHHHHHHHHhcc
Q psy16850        141 E-----------L-IYFYR--F---LANTTDIIKEASKELQE  165 (174)
Q Consensus       141 ~-----------s-~~~~~--f---~HNd~~~Le~~L~~~~~  165 (174)
                      .           + ++++.  -   -.-|+++|++.+.....
T Consensus        79 i~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~  120 (290)
T PF01212_consen   79 IHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGA  120 (290)
T ss_dssp             HHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTG
T ss_pred             eeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccc
Confidence            0           0 12221  1   24689999999998554

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=97.89  E-value=0.00013  Score=62.75  Aligned_cols=106  Identities=11%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcE--EEecchhHHHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAG--LVFTSCYVANDS  127 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~a--l~f~sGy~aN~~  127 (174)
                      .++.++||++|      .+|.+.+++.+.++.+ .|.  ++...|...+++++++.||+++|.+++  +++++|..+|..
T Consensus        21 ~~~~~~~~~~~------~~~~~~~a~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~   91 (373)
T TIGR03812        21 DGRILGSMCTN------PHPIAVKAYDMFIETN-LGD--PGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQ   91 (373)
T ss_pred             CCcEEEEEeCC------chHHHHHHHHHHhhcC-CCC--cccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHH
Confidence            45678899997      7888888887776553 222  234567788999999999999998754  899999999988


Q ss_pred             HHHHhccc----CCCCeeE-----------------EEEEEecC-----CCHHHHHHHHHHhc
Q psy16850        128 TLFTLGKM----IPYFTEL-----------------IYFYRFLA-----NTTDIIKEASKELQ  164 (174)
Q Consensus       128 ~i~aL~~~----~~g~~~s-----------------~~~~~f~H-----Nd~~~Le~~L~~~~  164 (174)
                      ++.++...    .+|..+.                 +.++.+++     .|+++|++.+.+..
T Consensus        92 ~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~~  154 (373)
T TIGR03812        92 AVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNT  154 (373)
T ss_pred             HHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhCc
Confidence            88766420    1222221                 35666666     48999999887644

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN02721 threonine aldolase

Probab=97.87  E-value=0.00011  Score=62.52  Aligned_cols=100  Identities=19%  Similarity=0.155  Sum_probs=70.0

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      ++++|+||.=. . ..|.+++++.+.    -.+.    ...+..+.+.+||++||+++|.+.++++++|..+|+.++.++
T Consensus         6 ~~~~~~~~~~~-~-~~~~~~~a~~~~----~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~   75 (353)
T PLN02721          6 RVVDLRSDTVT-K-PTDAMRAAMANA----EVDD----DVLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVH   75 (353)
T ss_pred             hhhhhhccccc-C-CCHHHHHHHHhc----cCCC----cccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHH
Confidence            46899998666 3 467777776442    1111    123456778999999999999999999999999999998887


Q ss_pred             cccCCCCeeE--------------------EEEEEecCC-----CHHHHHHHHHHh
Q psy16850        133 GKMIPYFTEL--------------------IYFYRFLAN-----TTDIIKEASKEL  163 (174)
Q Consensus       133 ~~~~~g~~~s--------------------~~~~~f~HN-----d~~~Le~~L~~~  163 (174)
                      .+. +|+++.                    +.++.++++     |+++|++.+++.
T Consensus        76 ~~~-~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~  130 (353)
T PLN02721         76 CDV-RGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPK  130 (353)
T ss_pred             ccC-CCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhc
Confidence            641 222111                    345556654     889999998754

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=97.86  E-value=5.6e-05  Score=68.56  Aligned_cols=80  Identities=16%  Similarity=0.111  Sum_probs=65.2

Q ss_pred             ecCCeeEEEeccCcccCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSNDYLGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~SndYLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~a  124 (174)
                      ..+|+++|+|+++.++.|. .||+|++|+.+.+++++.++  ++.   .++.+.+|+++|+++++.  +.+.+.+||-.|
T Consensus        68 D~dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~--~~~---~~~~~~~lae~L~~~~p~~~~~v~f~~sGseA  142 (459)
T PRK06082         68 DVDGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSP--RRF---TNETAIECAEKLTEIAGGELNRVLFAPGGTSA  142 (459)
T ss_pred             ECCCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCcc--Ccc---CCHHHHHHHHHHHHhCCCCCCEEEECCCcHHH
Confidence            3689999999999997777 59999999999999876542  333   258899999999999853  577888889999


Q ss_pred             HHHHHHHh
Q psy16850        125 NDSTLFTL  132 (174)
Q Consensus       125 N~~~i~aL  132 (174)
                      |-+.+..-
T Consensus       143 ve~AlklA  150 (459)
T PRK06082        143 IGMALKLA  150 (459)
T ss_pred             HHHHHHHH
Confidence            98888643

>PRK06149 hypothetical protein; Provisional

Probab=97.86  E-value=5e-05  Score=74.67  Aligned_cols=76  Identities=17%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             ecCCeeEEEeccCcccCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSNDYLGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~SndYLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy~a  124 (174)
                      ..+|+++|+|.+| |.+|. .||+|.+|+.+.+.+...   .+|.   .++.+.+|+++|++++  +.+.+.+++||+.|
T Consensus       581 D~dG~~ylD~~~~-~~~lGh~hp~v~~Ai~~q~~~l~~---~~~~---~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA  653 (972)
T PRK06149        581 DMAGRSYLDMVNN-VTVLGHGHPRLAAAAARQWSLLNT---NSRF---HYAAVAEFSERLAALAPDGLDTVFLVNSGSEA  653 (972)
T ss_pred             eCCCCEEEECCCC-ccccCCCCHHHHHHHHHHHHhccc---cccc---cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHH
Confidence            4689999999965 88898 599999999988876432   3443   4578999999999999  56899999999999


Q ss_pred             HHHHHH
Q psy16850        125 NDSTLF  130 (174)
Q Consensus       125 N~~~i~  130 (174)
                      |-+.|.
T Consensus       654 ~e~Alk  659 (972)
T PRK06149        654 NDLAIR  659 (972)
T ss_pred             HHHHHH
Confidence            999998

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=97.75  E-value=7.7e-05  Score=65.60  Aligned_cols=71  Identities=25%  Similarity=0.284  Sum_probs=59.2

Q ss_pred             EEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         55 TVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        55 inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      ++|.|-++=|  .+|++++++.++-       .+--.++|+.+..+++|+.+|+.+|++++++++||.+||+-.|.++++
T Consensus         2 ~~f~SDn~~g--~~~~m~eam~~a~-------~~~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~   72 (342)
T COG2008           2 IDFRSDNVAG--PTPEMREALAAAN-------AVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQ   72 (342)
T ss_pred             CccccCccCC--CCHHHHHHHHhcc-------ccCCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcC
Confidence            4566655544  3799999988752       122467899999999999999999999999999999999999999996

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=97.71  E-value=0.00037  Score=62.56  Aligned_cols=108  Identities=18%  Similarity=0.052  Sum_probs=74.7

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~  123 (174)
                      ..+|+++|+|.+.   .-||-+ ||+|.+|+.+.+++.. .      .+.......+|-++|++.+ +.+.+.+.+||-.
T Consensus        44 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~-~------~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGse  115 (431)
T PRK06209         44 DVDGNEYIEYGMGLRAVGLGHA-YPPVVEAVREALQDGC-N------FTRPSAIELDAAESFLELIDGADMVKFCKNGSD  115 (431)
T ss_pred             eCCCCEEEEccccccchhcCCC-CHHHHHHHHHHHHhCc-C------CCCCCHHHHHHHHHHHHhCCccceEEEecCHHH
Confidence            4689999999764   335554 8999999999988632 1      2222334457888898887 3578999999999


Q ss_pred             HHHHHHHHhc---cc-----C--CCCe-----------eE--------EEEEEecCCCHHHHHHHHHHh
Q psy16850        124 ANDSTLFTLG---KM-----I--PYFT-----------EL--------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       124 aN~~~i~aL~---~~-----~--~g~~-----------~s--------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      ||-+.|..-.   ++     .  .+.+           .+        ..+..|+|||+++||++|++.
T Consensus       116 A~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  184 (431)
T PRK06209        116 ATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALFEDH  184 (431)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHHHhC
Confidence            9999988321   10     0  0000           00        125689999999999999764

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=97.66  E-value=0.00023  Score=63.49  Aligned_cols=66  Identities=15%  Similarity=-0.100  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +..++||+.||++.|.+.|++++||..|+..++.++..  +|.++.                     +.++.+.++|+++
T Consensus        70 p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~  147 (403)
T PRK07810         70 PTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLG--AGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQ  147 (403)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhC--CCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence            45899999999999999999999999999999988875  343321                     4677888999999


Q ss_pred             HHHHHHHhc
Q psy16850        156 IKEASKELQ  164 (174)
Q Consensus       156 Le~~L~~~~  164 (174)
                      |++.++...
T Consensus       148 l~~ai~~~t  156 (403)
T PRK07810        148 WEEALSVPT  156 (403)
T ss_pred             HHHhcCcCc
Confidence            999987543

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.64  E-value=6.7e-05  Score=67.31  Aligned_cols=115  Identities=13%  Similarity=0.080  Sum_probs=69.5

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCcccc----------------------ccc---cCCchHH
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGT----------------------RNI---SGNSLFH   99 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~S----------------------r~~---~G~~~~~   99 (174)
                      ..+|+++|+|+|+.   +|| ..||+|.+++.+.+++++....+.                      +.+   +|+....
T Consensus        41 d~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e  119 (427)
T TIGR00508        41 LDDGRRLIDGMSSWWAAIHG-YNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVE  119 (427)
T ss_pred             eCCCCEEEEccchHHHhcCC-CCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHH
Confidence            45799999999987   999 779999999999999876332210                      111   3444444


Q ss_pred             HHHHHHHHHHh-----CCCcEEEecchhHHHHHHHHHhcccC-----------CCCeeE-EEEE----EecCCCHHHHHH
Q psy16850        100 EKLEEDVARLH-----QKEAGLVFTSCYVANDSTLFTLGKMI-----------PYFTEL-IYFY----RFLANTTDIIKE  158 (174)
Q Consensus       100 ~~LE~~lA~~~-----g~e~al~f~sGy~aN~~~i~aL~~~~-----------~g~~~s-~~~~----~f~HNd~~~Le~  158 (174)
                      ..++-..+-+.     |+...|.|..||+.+.....++.+..           ++.... ....    .|.|+|+++|++
T Consensus       120 ~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~  199 (427)
T TIGR00508       120 VALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAK  199 (427)
T ss_pred             HHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHH
Confidence            44444333221     35567777777777765544443310           000000 1111    236779999999


Q ss_pred             HHHHh
Q psy16850        159 ASKEL  163 (174)
Q Consensus       159 ~L~~~  163 (174)
                      ++.+.
T Consensus       200 ~l~~~  204 (427)
T TIGR00508       200 LMELH  204 (427)
T ss_pred             HHHhc
Confidence            99764

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK04311 selenocysteine synthase; Provisional

Probab=97.56  E-value=0.00056  Score=62.47  Aligned_cols=81  Identities=20%  Similarity=0.118  Sum_probs=55.0

Q ss_pred             eeEEEecc---CcccCCCC-CccchHHHHHHHHHcCCCccccccccC-CchHHHHHHHHHHHHhCCCcEEEecchhHHHH
Q psy16850         52 KEVTVYCS---NDYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISG-NSLFHEKLEEDVARLHQKEAGLVFTSCYVAND  126 (174)
Q Consensus        52 ~~~inf~S---ndYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G-~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~  126 (174)
                      +++||-..   .+-+|-+. .+++++++.+++..|+.-.  ..+..| ....+.++|+.||+++|.|+|++|+||+.|+.
T Consensus        79 r~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~~~~le--~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~  156 (464)
T PRK04311         79 RPVINATGVVLHTNLGRALLSEAAIEAVTEAARGYSNLE--YDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVL  156 (464)
T ss_pred             cceecCCccEEeccCCCCCCCHHHHHHHHHHHhcccccc--cchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHH
Confidence            44555444   23344443 6777888888776664210  001101 12458899999999999999999999999999


Q ss_pred             HHHHHhcc
Q psy16850        127 STLFTLGK  134 (174)
Q Consensus       127 ~~i~aL~~  134 (174)
                      .++.+|..
T Consensus       157 l~l~~l~~  164 (464)
T PRK04311        157 LALNALAA  164 (464)
T ss_pred             HHHHHhCC
Confidence            99988753

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=97.54  E-value=0.00075  Score=59.78  Aligned_cols=71  Identities=17%  Similarity=-0.023  Sum_probs=56.4

Q ss_pred             cccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEE
Q psy16850         87 GGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYF  145 (174)
Q Consensus        87 ~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~  145 (174)
                      ..+|..   .+.+++||+.||+++|.+++++++||..|+..++.++.+  +|.++.                     +.+
T Consensus        54 ~y~r~~---~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~--~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v  128 (390)
T PRK08133         54 IYSRFT---NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQ--AGDHVVSSRSLFGSTVSLFEKIFARFGIET  128 (390)
T ss_pred             eeECCC---ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEccCcchhHHHHHHHHHHHcCcEE
Confidence            345543   467999999999999999999999999999999988865  343321                     466


Q ss_pred             EEecCCCHHHHHHHHHH
Q psy16850        146 YRFLANTTDIIKEASKE  162 (174)
Q Consensus       146 ~~f~HNd~~~Le~~L~~  162 (174)
                      ..+..+|+++|++.++.
T Consensus       129 ~~vd~~d~~~l~~~i~~  145 (390)
T PRK08133        129 TFVDLTDLDAWRAAVRP  145 (390)
T ss_pred             EEECCCCHHHHHHhcCc
Confidence            77788899999988864

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=97.54  E-value=0.00053  Score=62.03  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=36.2

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      .+.+++||+.||++.|.+.|++|+||+.|+.++|.+|++
T Consensus        68 ~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~  106 (436)
T PRK07812         68 NPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAG  106 (436)
T ss_pred             CchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC
Confidence            467889999999999999999999999999999998875

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=97.54  E-value=0.00038  Score=61.60  Aligned_cols=65  Identities=14%  Similarity=0.114  Sum_probs=50.9

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+.+||++||++.|.+.|++|+||+.|+..++.+|.+  +|+++.                     +.+..+.+++.+
T Consensus        49 nPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~--~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e  126 (377)
T TIGR01324        49 TLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVK--AGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGE  126 (377)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcC--CCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHH
Confidence            368999999999999999999999999999999999876  454432                     244455566667


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +|++.++.
T Consensus       127 ~l~~~i~~  134 (377)
T TIGR01324       127 DIATLIQP  134 (377)
T ss_pred             HHHHhcCC
Confidence            77777654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02242 methionine gamma-lyase

Probab=97.50  E-value=0.00048  Score=61.84  Aligned_cols=70  Identities=20%  Similarity=0.025  Sum_probs=54.6

Q ss_pred             cccC--CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE----------------------EEEE
Q psy16850         91 NISG--NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL----------------------IYFY  146 (174)
Q Consensus        91 ~~~G--~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s----------------------~~~~  146 (174)
                      .+++  ..+.+++||+.||+++|.+.+++++||++|+..++.+|++  +|+++.                      +.+.
T Consensus        68 ~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~~--~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~  145 (418)
T PLN02242         68 YIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCS--SGGHVVASNTLYGGTHALLAHFLPRKCNITTT  145 (418)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCcHHHHHHHHHHhhhhccCceEE
Confidence            4455  3688999999999999999999999999999999999876  343332                      2344


Q ss_pred             EecCCCHHHHHHHHHH
Q psy16850        147 RFLANTTDIIKEASKE  162 (174)
Q Consensus       147 ~f~HNd~~~Le~~L~~  162 (174)
                      .+...|+++|++.++.
T Consensus       146 ~~d~~d~e~l~~~i~~  161 (418)
T PLN02242        146 FVDITDLEAVKKAVVP  161 (418)
T ss_pred             EcCCCCHHHHHHhcCc
Confidence            4556688888887754

>PRK10534 L-threonine aldolase; Provisional

Probab=97.48  E-value=0.00039  Score=59.16  Aligned_cols=71  Identities=21%  Similarity=0.168  Sum_probs=56.7

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~  133 (174)
                      +|+|+||.==|  -+|.++++..+++.    +    ...+|..+.+.+||++||+++|.+.++++++|..++...+.+++
T Consensus         1 ~~~~~~~~~~~--p~~~~~~a~~~~~~----~----~~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~   70 (333)
T PRK10534          1 MIDLRSDTVTR--PSRAMLEAMMAAPV----G----DDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHC   70 (333)
T ss_pred             CcccccccCCC--CCHHHHHHHHhccC----C----CcccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhc
Confidence            47889998777  56788887665321    1    12355678899999999999999999999999999999888886


Q ss_pred             c
Q psy16850        134 K  134 (174)
Q Consensus       134 ~  134 (174)
                      .
T Consensus        71 ~   71 (333)
T PRK10534         71 E   71 (333)
T ss_pred             C
Confidence            5

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=97.47  E-value=0.00062  Score=60.84  Aligned_cols=73  Identities=18%  Similarity=0.074  Sum_probs=57.7

Q ss_pred             ccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EE
Q psy16850         86 AGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IY  144 (174)
Q Consensus        86 s~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~  144 (174)
                      ..-||...   +..++||++||++.|.+.+++++||..|+..++.++++  +|.++.                     +.
T Consensus        49 ~~ysr~~~---p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~  123 (418)
T TIGR01326        49 NIYSRLMN---PTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQ--AGDNIVSSSYLYGGTYNLFKHTLKRLGIE  123 (418)
T ss_pred             ceeECCCC---hhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHHHHHHHcCcE
Confidence            33566543   56799999999999999999999999999999988865  343321                     46


Q ss_pred             EEEecCCCHHHHHHHHHHh
Q psy16850        145 FYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       145 ~~~f~HNd~~~Le~~L~~~  163 (174)
                      +..++++|+++|++.++..
T Consensus       124 v~~v~~~d~~~l~~~l~~~  142 (418)
T TIGR01326       124 VRFVDPDDPEEFEKAIDEN  142 (418)
T ss_pred             EEEECCCCHHHHHHhcCcC
Confidence            6778889999999988653

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK08114 cystathionine beta-lyase; Provisional

Probab=97.45  E-value=0.00062  Score=60.97  Aligned_cols=65  Identities=14%  Similarity=0.065  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+....||+.||++-|.+.|++|+||..|..+++.+|.+  +|+++.                     +.+..+.+.|++
T Consensus        61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~--~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~  138 (395)
T PRK08114         61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVE--QGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGA  138 (395)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcC--CCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHH
Confidence            478999999999999999999999999999999998876  454432                     367788899999


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      .+++.|+.
T Consensus       139 ~l~~~l~~  146 (395)
T PRK08114        139 DIAKLIQP  146 (395)
T ss_pred             HHHHhcCC
Confidence            99998864

>PRK06234 methionine gamma-lyase; Provisional

Probab=97.38  E-value=0.001  Score=59.17  Aligned_cols=66  Identities=20%  Similarity=0.085  Sum_probs=54.1

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+-..+||+.||++.|.+.+++++||..|+..++.++.+  +|.++.                     +.+..+..+|++
T Consensus        63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~--~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e  140 (400)
T PRK06234         63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALK--AGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLE  140 (400)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC--CCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHH
Confidence            356889999999999999999999999999999988865  333221                     567788899999


Q ss_pred             HHHHHHHHh
Q psy16850        155 IIKEASKEL  163 (174)
Q Consensus       155 ~Le~~L~~~  163 (174)
                      +|++.+...
T Consensus       141 ~l~~~i~~~  149 (400)
T PRK06234        141 EVRNALKAN  149 (400)
T ss_pred             HHHHHhccC
Confidence            999988653

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=97.37  E-value=0.0021  Score=58.75  Aligned_cols=108  Identities=17%  Similarity=0.023  Sum_probs=76.3

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~  123 (174)
                      ..+|+++|||.+.-   -||-+ ||+|.+++.+.+++. ...      ...++...+|-++|++.+ +.+.+.+.+||-.
T Consensus        95 D~dG~~yiD~~~g~g~~~lGh~-~p~v~~av~~ql~~~-~~~------~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsE  166 (474)
T PLN02482         95 DVDGNEYIDYVGSWGPAIIGHA-DDEVLAALAETMKKG-TSF------GAPCLLENVLAEMVIDAVPSVEMVRFVNSGTE  166 (474)
T ss_pred             ECCCCEEEEecccccccccCCC-CHHHHHHHHHHHhhC-CCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHH
Confidence            46899999997652   24433 899999999998763 211      124566778888888876 4688999999999


Q ss_pred             HHHHHHHHhcc---c---------CCCCe-----------------eE--------EEEEEecCCCHHHHHHHHHHh
Q psy16850        124 ANDSTLFTLGK---M---------IPYFT-----------------EL--------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       124 aN~~~i~aL~~---~---------~~g~~-----------------~s--------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      ||.+.|..--.   +         ..|..                 .+        ..+..++|||+++||++|++.
T Consensus       167 A~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~  243 (474)
T PLN02482        167 ACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEAN  243 (474)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhC
Confidence            99999874321   0         11211                 01        146789999999999999864

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=97.36  E-value=0.0027  Score=54.77  Aligned_cols=99  Identities=16%  Similarity=0.070  Sum_probs=66.8

Q ss_pred             CCeeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHH
Q psy16850         50 SEKEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDS  127 (174)
Q Consensus        50 ~g~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~  127 (174)
                      +++++++|++| +++|.  .|.+++++.++++.+..        ++. ..+.+|++.+|++++.+ +.|++++|....+.
T Consensus        30 ~~~~~i~l~~~~~~~~~--~~~~~~a~~~~~~~~~~--------y~~-~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~   98 (367)
T PRK02731         30 GIADIIKLASNENPLGP--SPKAIEAIRAAADELHR--------YPD-GSGFELKAALAEKFGVDPERIILGNGSDEILE   98 (367)
T ss_pred             CCCceEEecCCCCCCCC--CHHHHHHHHHHHHhhcC--------CCC-CcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHH
Confidence            45679999999 58885  68899999888765321        111 11478999999999975 57999999887665


Q ss_pred             HH-HHhcccCCCCeeE-----------------EEEEEecC----CCHHHHHHHHH
Q psy16850        128 TL-FTLGKMIPYFTEL-----------------IYFYRFLA----NTTDIIKEASK  161 (174)
Q Consensus       128 ~i-~aL~~~~~g~~~s-----------------~~~~~f~H----Nd~~~Le~~L~  161 (174)
                      ++ .++.+  +|....                 +.++.++.    -|+++|++.+.
T Consensus        99 ~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~  152 (367)
T PRK02731         99 LLARAYLG--PGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAKDYGHDLDAMLAAVT  152 (367)
T ss_pred             HHHHHhcC--CCCEEEEecCCHHHHHHHHHHcCCeEEEecccCCCCCHHHHHHHhC
Confidence            54 55544  333222                 24455543    36788887775

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=97.34  E-value=0.0012  Score=58.64  Aligned_cols=63  Identities=24%  Similarity=0.084  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +.+.+||+.||+++|.+.+++++||..|+..++.+|.+  +|+++.                     +.+..+.-+|+++
T Consensus        59 p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~--~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~  136 (391)
T TIGR01328        59 PTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILK--AGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE  136 (391)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence            56899999999999999999999999999999998865  444332                     2344455556666


Q ss_pred             HHHHHH
Q psy16850        156 IKEASK  161 (174)
Q Consensus       156 Le~~L~  161 (174)
                      +++.+.
T Consensus       137 l~~~i~  142 (391)
T TIGR01328       137 VKAHIK  142 (391)
T ss_pred             HHHhhc
Confidence            666664

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK05939 hypothetical protein; Provisional

Probab=97.33  E-value=0.001  Score=59.27  Aligned_cols=65  Identities=12%  Similarity=0.091  Sum_probs=53.8

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE--------------------EEEEEecCCCHHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL--------------------IYFYRFLANTTDI  155 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s--------------------~~~~~f~HNd~~~  155 (174)
                      .+..++||+.||++.|.+.|++|+||..|..+++.++.+  +|.++.                    +.+..+...|+++
T Consensus        46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~--~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~  123 (397)
T PRK05939         46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLR--AGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDATDVQN  123 (397)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcC--CCCEEEECCCccccHHHHHHHHHhcCCEEEEECCCCHHH
Confidence            477999999999999999999999999999999988865  343322                    4667778889999


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.+..
T Consensus       124 l~~~l~~  130 (397)
T PRK05939        124 VAAAIRP  130 (397)
T ss_pred             HHHhCCC
Confidence            9988864

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=97.31  E-value=0.00089  Score=59.31  Aligned_cols=64  Identities=28%  Similarity=0.221  Sum_probs=50.4

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE--------------------EEEEEecCCCHHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL--------------------IYFYRFLANTTDI  155 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s--------------------~~~~~f~HNd~~~  155 (174)
                      .+.+++||+.+|+++|.+++++|+||..|+..++.++.+  +|+++.                    +.+ .|-..|+++
T Consensus        52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~--~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v-~~~~~d~~~  128 (385)
T PRK08574         52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLK--AGDRVVLPMEAYGTTLRLLKSLEKFGVKV-VLAYPSTED  128 (385)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHhhccCcEE-EEECCCHHH
Confidence            367999999999999999999999999999999998875  444332                    122 233578888


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.+++
T Consensus       129 l~~~i~~  135 (385)
T PRK08574        129 IIEAIKE  135 (385)
T ss_pred             HHHhcCc
Confidence            8888765

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=97.30  E-value=0.001  Score=59.20  Aligned_cols=65  Identities=22%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+++||+.||++.|.+.+++|+||..|+..++.++.+  +|.++.                     +.+..+...|++
T Consensus        63 ~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~--~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e  140 (398)
T PRK08249         63 NPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLK--PGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHE  140 (398)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHH
Confidence            478999999999999999999999999999999988865  343221                     456667888999


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +|++.++.
T Consensus       141 ~l~~~i~~  148 (398)
T PRK08249        141 QIEAEIAK  148 (398)
T ss_pred             HHHHhcCC
Confidence            99988865

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=97.28  E-value=0.0017  Score=56.58  Aligned_cols=103  Identities=14%  Similarity=0.098  Sum_probs=70.6

Q ss_pred             CCee-EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-CcEEEecchhHHHHH
Q psy16850         50 SEKE-VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-EAGLVFTSCYVANDS  127 (174)
Q Consensus        50 ~g~~-~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-e~al~f~sGy~aN~~  127 (174)
                      .|+. .++|+.|+ .++...|++++++.+++... .+       ++.. .+.+|+++||+|++. ++.|++++|...++.
T Consensus        29 ~g~~~~~~l~~~~-~~~~~~~~~~~a~~~~~~~~-~~-------Y~~~-~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~   98 (369)
T PRK08153         29 RGRPFRARIGANE-SGFGPSPSVIAAMREAAAEI-WK-------YGDP-ENHDLRHALAAHHGVAPENIMVGEGIDGLLG   98 (369)
T ss_pred             cCCcceeEecCCC-CCCCCCHHHHHHHHHHHHHh-hc-------CCCC-ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHH
Confidence            4554 46999996 58999999999998876431 11       1122 267999999999985 468999999999997


Q ss_pred             HHHHh-cccCCCCeeE-----------------EEEEEec-CCCHHHHHHHHHHhc
Q psy16850        128 TLFTL-GKMIPYFTEL-----------------IYFYRFL-ANTTDIIKEASKELQ  164 (174)
Q Consensus       128 ~i~aL-~~~~~g~~~s-----------------~~~~~f~-HNd~~~Le~~L~~~~  164 (174)
                      .+..+ ++  +|+...                 +.++.++ |+|..+++.+++...
T Consensus        99 ~~~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~  152 (369)
T PRK08153         99 LIVRLYVE--PGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDREDLDALLDAAR  152 (369)
T ss_pred             HHHHHhcC--CCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhc
Confidence            76554 44  343322                 2333333 788777887776654

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=97.25  E-value=0.0049  Score=54.58  Aligned_cols=108  Identities=21%  Similarity=0.111  Sum_probs=76.5

Q ss_pred             ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-CCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-KEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-~e~al~f~sGy~  123 (174)
                      ..+|+++|||.+.-.   ||- .||+|++|+.+.+++ +..      .....+...+|-++|++++. .+.+++++||-.
T Consensus        44 d~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~-~~~------~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGse  115 (423)
T TIGR00713        44 DVDGNEYIDYVLSWGPLILGH-AHPRVVEAVKEALER-GTS------YGAPTEAEILLAKEIISRVPSVEMVRFVNSGTE  115 (423)
T ss_pred             eCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHh-CCc------CCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHH
Confidence            467899999987632   333 389999999999876 221      12345677899999999885 468999999999


Q ss_pred             HHHHHHHHhcc---c---------CCCC-----------------------e--eEEEEEEecCCCHHHHHHHHHHh
Q psy16850        124 ANDSTLFTLGK---M---------IPYF-----------------------T--ELIYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       124 aN~~~i~aL~~---~---------~~g~-----------------------~--~s~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      ||.++|.....   .         ..|.                       .  .....++++|||+++||+++++.
T Consensus       116 A~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~  192 (423)
T TIGR00713       116 ATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEY  192 (423)
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHc
Confidence            99998875211   0         1110                       0  00236788999999999999754

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=97.24  E-value=0.0025  Score=54.65  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=66.4

Q ss_pred             CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHHHHhcccC--CCCeeE
Q psy16850         67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTLFTLGKMI--PYFTEL  142 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i~aL~~~~--~g~~~s  142 (174)
                      .+|++++++.+.++..   .+.++...|....++++++.||+++|.+.  .+++++|+.+|..++.++....  ++.+..
T Consensus        32 ~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl  108 (371)
T PRK13520         32 PHPIARKAHEMFLETN---LGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIV  108 (371)
T ss_pred             chHHHHHHHHHHHhcC---CCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEE
Confidence            4788899988888653   22233345777888999999999999764  5889999999999987764310  121111


Q ss_pred             -----------------EEEEEec-----CCCHHHHHHHHHHhc
Q psy16850        143 -----------------IYFYRFL-----ANTTDIIKEASKELQ  164 (174)
Q Consensus       143 -----------------~~~~~f~-----HNd~~~Le~~L~~~~  164 (174)
                                       +.++.++     +.|+++|++.+....
T Consensus       109 ~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~  152 (371)
T PRK13520        109 VPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNT  152 (371)
T ss_pred             ecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCC
Confidence                             3445554     458999999987543

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=97.22  E-value=0.0022  Score=57.63  Aligned_cols=73  Identities=18%  Similarity=0.036  Sum_probs=57.4

Q ss_pred             ccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EE
Q psy16850         86 AGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IY  144 (174)
Q Consensus        86 s~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~  144 (174)
                      ..-||...   +...+||++||++.|.+.+++|+||..|...++.+|.+  +|.++.                     +.
T Consensus        50 ~~y~r~~~---pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~--~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~  124 (425)
T PRK06084         50 NIYTRIMN---PTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAE--AGDNIVSVAKLYGGTYNLLAHTLPRIGIE  124 (425)
T ss_pred             ccccCCCC---chHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHHHHHHhcccceeE
Confidence            44556533   56789999999999999999999999999999998875  333221                     34


Q ss_pred             EEEecCCCHHHHHHHHHHh
Q psy16850        145 FYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       145 ~~~f~HNd~~~Le~~L~~~  163 (174)
                      +..+.++|+++||+.+++.
T Consensus       125 v~~~d~~d~e~le~ai~~~  143 (425)
T PRK06084        125 TRFAAHDDIAALEALIDER  143 (425)
T ss_pred             EEEECCCCHHHHHHHhccC
Confidence            5667889999999998753

>PRK05968 hypothetical protein; Provisional

Probab=97.20  E-value=0.002  Score=57.10  Aligned_cols=63  Identities=19%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+.+||+.+|+++|.+.+++|+||..|+..++.++.+  +|.++.                     +.+..+..+|++
T Consensus        62 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~  139 (389)
T PRK05968         62 NPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVE--PGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEE  139 (389)
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHH
Confidence            466999999999999999999999999999988888865  454432                     345566777888


Q ss_pred             HHHHHH
Q psy16850        155 IIKEAS  160 (174)
Q Consensus       155 ~Le~~L  160 (174)
                      +|++.+
T Consensus       140 ~l~~~i  145 (389)
T PRK05968        140 AVAKAL  145 (389)
T ss_pred             HHHHhc
Confidence            888876

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.18  E-value=0.0038  Score=55.62  Aligned_cols=111  Identities=16%  Similarity=0.070  Sum_probs=78.4

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.+.   .-||-+ ||+|.+|+.+.+++.+....++ .   .++...+|-++|++.+.  .+.+.+.+||-
T Consensus        38 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~-~---~~~~~~~la~~l~~~~p~~~~~v~f~~sGs  112 (423)
T PRK05964         38 LADGRELIDAISSWWVATHGHN-HPYIDQAIREQLDRLDHVIFAG-F---THEPAERLAQRLVALTPGGLDHVFFSDSGS  112 (423)
T ss_pred             eCCCCEEEEcchhHHhccCCCC-CHHHHHHHHHHHhhCCCccccc-c---CCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence            3689999999765   235554 8999999999998755322111 1   35677889999999884  57899999999


Q ss_pred             HHHHHHHHHhc---------cc---------CCC--------------------CeeEEEEEEecCCC-----HHHHHHH
Q psy16850        123 VANDSTLFTLG---------KM---------IPY--------------------FTELIYFYRFLANT-----TDIIKEA  159 (174)
Q Consensus       123 ~aN~~~i~aL~---------~~---------~~g--------------------~~~s~~~~~f~HNd-----~~~Le~~  159 (174)
                      .||-+.|..--         ++         ..|                    ......++.|+|||     +++||++
T Consensus       113 eA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~  192 (423)
T PRK05964        113 VAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEAL  192 (423)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHH
Confidence            99999888531         11         011                    01113567899999     8999999


Q ss_pred             HHHh
Q psy16850        160 SKEL  163 (174)
Q Consensus       160 L~~~  163 (174)
                      +++.
T Consensus       193 l~~~  196 (423)
T PRK05964        193 LEKH  196 (423)
T ss_pred             HHhC
Confidence            9754

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=97.14  E-value=0.0043  Score=55.17  Aligned_cols=65  Identities=14%  Similarity=-0.020  Sum_probs=51.7

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+.+||++||+++|.+.+++++||..|+..++.++.+  +|+++.                     +.+..+.+.|++
T Consensus        64 ~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l~--~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e  141 (398)
T PRK07504         64 NPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVK--AGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLD  141 (398)
T ss_pred             CchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHhC--CCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHH
Confidence            356899999999999999999999999999888877765  343332                     355566678999


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      ++++.+..
T Consensus       142 ~l~~ai~~  149 (398)
T PRK07504        142 NWEKAVRP  149 (398)
T ss_pred             HHHHhcCc
Confidence            99988754

>PLN00144 acetylornithine transaminase

Probab=97.10  E-value=0.0039  Score=55.03  Aligned_cols=78  Identities=15%  Similarity=0.073  Sum_probs=61.3

Q ss_pred             ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|+|.|.-.   ||-+ ||+|.+|+.+.+++....+   ..  ..+....+|-++|++..+.+.+.+.+||-.|
T Consensus        11 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~---~~--~~~~~~~~la~~l~~~~~~~~v~f~~sGseA   84 (382)
T PLN00144         11 DVEGKEYLDMAAGIAVNALGHG-DPDWVKAVAEQAGTLAHVS---NV--YHTIPQVELAKRLVASSFADRVFFCNSGTEA   84 (382)
T ss_pred             eCCCCEEEECCcCHHhccCCCC-CHHHHHHHHHHHHhcCCcc---cc--ccCHHHHHHHHHHHhcCCCCeEEEeCCcHHH
Confidence            468999999987743   4544 8999999999998754321   11  2356788999999998888889999999999


Q ss_pred             HHHHHHH
Q psy16850        125 NDSTLFT  131 (174)
Q Consensus       125 N~~~i~a  131 (174)
                      |-+.|..
T Consensus        85 ~e~Alkl   91 (382)
T PLN00144         85 NEAAIKF   91 (382)
T ss_pred             HHHHHHH
Confidence            9988874

>PRK06767 methionine gamma-lyase; Provisional

Probab=97.10  E-value=0.0027  Score=56.07  Aligned_cols=43  Identities=28%  Similarity=0.135  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~  141 (174)
                      +...+||+.||+++|.+++++|+||..|+..++.++.+  +|.++
T Consensus        61 pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~~--~Gd~V  103 (386)
T PRK06767         61 PTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLK--AGDHI  103 (386)
T ss_pred             cchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEE
Confidence            55899999999999999999999999999999988875  45443

>PRK06105 aminotransferase; Provisional

Probab=97.06  E-value=0.0028  Score=57.51  Aligned_cols=81  Identities=16%  Similarity=0.060  Sum_probs=63.4

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.   .=||-+ ||+|.+|+.+.+++.+..+..++   ..++...+|.++|++.+..  +.+.+.+||.
T Consensus        44 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~~~~~---~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  119 (460)
T PRK06105         44 DDAGKRYIEGMAGLWSVALGFS-EQRLVEAAARQMKKLPFYHTFSH---KSHGPVIDLAEKLVAMAPVPMSKVFFTNSGS  119 (460)
T ss_pred             ECCCCEEEEcchhHHhccCCCC-CHHHHHHHHHHHHhCCCeecccc---cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence            4689999999876   345554 99999999999998764333322   2468889999999999853  5678889999


Q ss_pred             HHHHHHHHHh
Q psy16850        123 VANDSTLFTL  132 (174)
Q Consensus       123 ~aN~~~i~aL  132 (174)
                      .||-+.|...
T Consensus       120 eAve~AlKla  129 (460)
T PRK06105        120 EANDTVVKLV  129 (460)
T ss_pred             HHHHHHHHHH
Confidence            9999998863

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=97.05  E-value=0.0033  Score=55.57  Aligned_cols=108  Identities=19%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|+|.|.   .=||- .||+|.+|+.+.+++....  ++..   .++...+|+++|+++.+.+.+++.+||-.|
T Consensus        20 D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~--~~~~---~~~~~~~la~~l~~~~~~~~v~~~~SGseA   93 (364)
T PRK04013         20 DSQGRRYLDLIAGIGVNVLGH-NHPEWVEEMSEQLEKLVVA--GPMF---EHEEKEEMLEELSKWVNYEYVYMGNSGTEA   93 (364)
T ss_pred             ECCCCEEEEcccChhhccCCC-CCHHHHHHHHHHHHhcCCc--cCCc---CCHHHHHHHHHHHhhcCCCEEEEeCchHHH
Confidence            4689999999775   23454 3899999999999875422  2222   357889999999999998999999999999


Q ss_pred             HHHHHHHhccc------------CCCCe------------------eEEEEEEecCCCHHHHHHHHH
Q psy16850        125 NDSTLFTLGKM------------IPYFT------------------ELIYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       125 N~~~i~aL~~~------------~~g~~------------------~s~~~~~f~HNd~~~Le~~L~  161 (174)
                      |-..|......            ..|..                  ....+..++-||++.||+.+.
T Consensus        94 ~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~  160 (364)
T PRK04013         94 VEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAIT  160 (364)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhc
Confidence            99999866420            01110                  002345677889999998885

>KOG1368|consensus

Probab=97.01  E-value=0.0014  Score=57.34  Aligned_cols=59  Identities=29%  Similarity=0.375  Sum_probs=49.5

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      ..++++++.+|.    +|    --++|..+.-.+||+..|+++|+|++|+.+||.+.|+-.|-+-+.
T Consensus        35 TdeMr~am~eA~----vg----DdVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~   93 (384)
T KOG1368|consen   35 TDEMRRAMAEAS----VG----DDVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCH   93 (384)
T ss_pred             hHHHHHHHhhcc----cC----cccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhc
Confidence            345666666653    44    578899999999999999999999999999999999988887775

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=96.98  E-value=0.014  Score=53.17  Aligned_cols=78  Identities=14%  Similarity=0.092  Sum_probs=60.4

Q ss_pred             CCeeEEEeccCc-ccCCCCCc---cchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         50 SEKEVTVYCSND-YLGMSCHP---KVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        50 ~g~~~inf~Snd-YLGL~~~p---~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      .|..+++|.+-+ |..|-.++   .+++++.+++.. |.      ..++...-..+||+.+|+++|.+.+++.++|-.|+
T Consensus        34 ~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~-g~------~~Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~  106 (460)
T PRK13238         34 AGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMR-GD------EAYAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAE  106 (460)
T ss_pred             cCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHh-CC------cccCCCCCHHHHHHHHHHHhCCCcEEECCCHHHHH
Confidence            356788888766 45777665   588888888852 32      11333345789999999999999999999999999


Q ss_pred             HHHHHHhcc
Q psy16850        126 DSTLFTLGK  134 (174)
Q Consensus       126 ~~~i~aL~~  134 (174)
                      ..++.+|++
T Consensus       107 ~~~~~all~  115 (460)
T PRK13238        107 QILFPVLIK  115 (460)
T ss_pred             HHHHHHhCC
Confidence            999999976

>PRK02948 cysteine desulfurase; Provisional

Probab=96.96  E-value=0.0037  Score=54.23  Aligned_cols=66  Identities=18%  Similarity=0.189  Sum_probs=47.1

Q ss_pred             CccchHHHHHHHHHcCCCccccccccC-CchHHHHHHHHHHHHhCC-CcEEEecch-hHHHHHHHHHhc
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISG-NSLFHEKLEEDVARLHQK-EAGLVFTSC-YVANDSTLFTLG  133 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G-~~~~~~~LE~~lA~~~g~-e~al~f~sG-y~aN~~~i~aL~  133 (174)
                      .+.+++++.+.++.++...+++..... ...+++++++.+|+++|. ++.++|++| ..+|..++.++.
T Consensus        13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~   81 (381)
T PRK02948         13 SKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLL   81 (381)
T ss_pred             CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHH
Confidence            677888888888776544443332222 236799999999999984 457777666 899888887775

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=96.94  E-value=0.012  Score=50.50  Aligned_cols=75  Identities=17%  Similarity=0.156  Sum_probs=50.0

Q ss_pred             cCCeeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEe-cchhHH-
Q psy16850         49 DSEKEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVF-TSCYVA-  124 (174)
Q Consensus        49 ~~g~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f-~sGy~a-  124 (174)
                      .+++.+|||++| +++|  ..|++++++.+++..+..        ++ ...+.+|++.||+|+|.+. -+++ ++|-.. 
T Consensus        31 ~~~~~~i~l~~~~~~~~--~~~~~~~~~~~~~~~~~~--------y~-~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~   99 (361)
T PRK00950         31 IDPESIIKLGSNENPLG--PSPKAVEAIEKELSKIHR--------YP-EPDAPELREALSKYTGVPVENIIVGGDGMDEV   99 (361)
T ss_pred             CCccceEEccCCCCCCC--CCHHHHHHHHHHHHhhcC--------CC-CCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHH
Confidence            345689999999 5777  578899998887764321        11 1235999999999999643 3555 677543 


Q ss_pred             HHHHHHHhcc
Q psy16850        125 NDSTLFTLGK  134 (174)
Q Consensus       125 N~~~i~aL~~  134 (174)
                      ...++.++.+
T Consensus       100 i~~~~~~~~~  109 (361)
T PRK00950        100 IDTLMRTFID  109 (361)
T ss_pred             HHHHHHHhcC
Confidence            3445555543

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.94  E-value=0.0045  Score=55.66  Aligned_cols=64  Identities=23%  Similarity=0.061  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +...+||+.||++.|.+.|++++||..|+..++.++.+  +|.++.                     +.++.+.-+|+++
T Consensus        63 p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all~--pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~  140 (427)
T PRK05994         63 PTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQ--PGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPAS  140 (427)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC--CCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence            56889999999999999999999999999999998875  454433                     2445556678888


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.+..
T Consensus       141 l~~ai~~  147 (427)
T PRK05994        141 FERAITP  147 (427)
T ss_pred             HHHhcCc
Confidence            8888754

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=96.94  E-value=0.0082  Score=52.90  Aligned_cols=65  Identities=18%  Similarity=0.066  Sum_probs=50.9

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+...+||+.||+++|.+.+++++||..|+..++.++.+  +|.++.                     +.+..+.-+|++
T Consensus        53 ~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~  130 (380)
T TIGR01325        53 NPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQ--AGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLN  130 (380)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHH
Confidence            366999999999999999999999999999999998865  344332                     244555667788


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +|++.++.
T Consensus       131 ~l~~~i~~  138 (380)
T TIGR01325       131 AWEAAVKP  138 (380)
T ss_pred             HHHHhcCC
Confidence            88776643

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=96.88  E-value=0.013  Score=53.04  Aligned_cols=109  Identities=16%  Similarity=0.038  Sum_probs=76.1

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy  122 (174)
                      ..+|+++|+|.+.-   -||-+ ||+|.+|+.+.+++. ...      .-.++...+|-++|++.++.  +.+.+.+||-
T Consensus        49 D~dG~~yiD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~-~~~------~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGs  120 (433)
T PRK00615         49 DSLGKTFIDFCGSWGSLIHGHS-HPKICDAIQQGAERG-TSY------GLTSEQEILFAEELFSYLGLEDHKIRFVSSGT  120 (433)
T ss_pred             ECCCCEEEEcccchhccccCCC-CHHHHHHHHHHHHhC-CCC------CCCCHHHHHHHHHHHHhCCCCcCEEEEeCchH
Confidence            36799999997652   23433 999999999998763 211      12356778888888888754  5789999999


Q ss_pred             HHHHHHHHHhcc---c---------CCCCe---e-------------------E---EEEEEecCCCHHHHHHHHHHhc
Q psy16850        123 VANDSTLFTLGK---M---------IPYFT---E-------------------L---IYFYRFLANTTDIIKEASKELQ  164 (174)
Q Consensus       123 ~aN~~~i~aL~~---~---------~~g~~---~-------------------s---~~~~~f~HNd~~~Le~~L~~~~  164 (174)
                      .||-..|..--.   +         ..|..   +                   .   .....|+|||+++||++|++..
T Consensus       121 EA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~  199 (433)
T PRK00615        121 EATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLG  199 (433)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcC
Confidence            999998874321   0         12211   0                   0   1246789999999999998654

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=96.87  E-value=0.01  Score=53.60  Aligned_cols=79  Identities=16%  Similarity=0.060  Sum_probs=60.4

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG  121 (174)
                      ..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++....+..    ...++...+|.++|++.+..   +.+.+.+||
T Consensus        38 D~dG~~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SG  112 (445)
T PRK08593         38 DVDGKTYIDLLASASSQNVGHA-PPRVVEAIKAQADKFIHYTPA----YMYHEPLVRLAKKLCELAPGDFEKRVTFGLSG  112 (445)
T ss_pred             eCCCCEEEECCccHHhhcCCCC-CHHHHHHHHHHHHhccCcccc----ccCCHHHHHHHHHHHHhCCCCCCCEEEECCch
Confidence            4689999999764   236764 999999999999886533221    12468889999999999853   356666999


Q ss_pred             hHHHHHHHHH
Q psy16850        122 YVANDSTLFT  131 (174)
Q Consensus       122 y~aN~~~i~a  131 (174)
                      ..||-+.|..
T Consensus       113 seA~e~Aikl  122 (445)
T PRK08593        113 SDANDGIIKF  122 (445)
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=96.86  E-value=0.0065  Score=54.29  Aligned_cols=68  Identities=21%  Similarity=0.170  Sum_probs=54.3

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+....||+.||+.-|.++|++|+||..|-.+++-+|.+  +|.++.                     +.+..+.-.|++
T Consensus        54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~--~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~  131 (386)
T PF01053_consen   54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLK--PGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLE  131 (386)
T ss_dssp             -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS---TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHH
T ss_pred             cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcc--cCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHH
Confidence            478999999999999999999999999999888888876  566553                     255666678899


Q ss_pred             HHHHHHHHhcc
Q psy16850        155 IIKEASKELQE  165 (174)
Q Consensus       155 ~Le~~L~~~~~  165 (174)
                      +|++.++....
T Consensus       132 ~l~~~l~~~t~  142 (386)
T PF01053_consen  132 ALEAALRPNTK  142 (386)
T ss_dssp             HHHHHHCTTEE
T ss_pred             HHHhhccccce
Confidence            99998887544

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=96.86  E-value=0.015  Score=52.86  Aligned_cols=113  Identities=21%  Similarity=0.104  Sum_probs=82.3

Q ss_pred             eeecCCeeEEEeccCc-ccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-CcEEEecchh
Q psy16850         46 EYTDSEKEVTVYCSND-YLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-EAGLVFTSCY  122 (174)
Q Consensus        46 ~~~~~g~~~inf~Snd-YLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-e~al~f~sGy  122 (174)
                      .+.+||.++|+|+-.. =+-|.+ ||.|++|+.+.+++ |++-+      ..+..-.+|-+.|.+.++. |..-+.+||.
T Consensus        47 l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~-G~~fg------~Pte~Ei~~Aell~~~~p~~e~vrfvnSGT  119 (432)
T COG0001          47 LTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER-GLSFG------APTELEVELAELLIERVPSIEKVRFVNSGT  119 (432)
T ss_pred             EEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHh-cCCCC------CCCHHHHHHHHHHHHhcCcccEEEEecchh
Confidence            3457899999987543 355555 99999999998865 43321      2345667777888888887 9999999999


Q ss_pred             HHHHHHHHHhcc---c--------------------------------CCCCeeE--EEEEEecCCCHHHHHHHHHHhcc
Q psy16850        123 VANDSTLFTLGK---M--------------------------------IPYFTEL--IYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       123 ~aN~~~i~aL~~---~--------------------------------~~g~~~s--~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                      .|+.++|-.=-+   .                                -+|+..+  .....++=||.+.||+++++.+.
T Consensus       120 EAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~  199 (432)
T COG0001         120 EATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGD  199 (432)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCC
Confidence            999999873221   0                                1222222  46789999999999999999854

>PRK06460 hypothetical protein; Provisional

Probab=96.84  E-value=0.0058  Score=53.88  Aligned_cols=63  Identities=24%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+.+||++||++.|.+.+++|+||..|+..++.++.+  +|+++.                     +.+..+++++.+
T Consensus        44 ~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~--~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~  121 (376)
T PRK06460         44 NPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLK--PGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDN  121 (376)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHH
Confidence            478999999999999999999999999999999998876  343322                     356677787766


Q ss_pred             HHHHHH
Q psy16850        155 IIKEAS  160 (174)
Q Consensus       155 ~Le~~L  160 (174)
                      .++.++
T Consensus       122 ~l~~~~  127 (376)
T PRK06460        122 IIEKAK  127 (376)
T ss_pred             HHHHhc
Confidence            666544

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=96.84  E-value=0.0054  Score=54.28  Aligned_cols=64  Identities=22%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +...+||+.||++.|.+.+++|+||..|+..++.+|.+  +|+++.                     +.+..+...|+++
T Consensus        61 p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~  138 (388)
T PRK07811         61 PTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLR--PGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDA  138 (388)
T ss_pred             ccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHH
Confidence            66899999999999999999999999999999999975  444332                     2344455578888


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.+..
T Consensus       139 l~~~i~~  145 (388)
T PRK07811        139 VRAAITP  145 (388)
T ss_pred             HHHhcCc
Confidence            8887765

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.84  E-value=0.0051  Score=55.73  Aligned_cols=69  Identities=16%  Similarity=0.018  Sum_probs=53.0

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecC-CCH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLA-NTT  153 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~H-Nd~  153 (174)
                      .+..++||+.||++.|.+.|++|+||..|+..++-+|.+  +|+++.                     +++..+.= .|+
T Consensus        60 nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~--~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~  137 (432)
T PRK06702         60 NPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICS--SGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA  137 (432)
T ss_pred             CcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH
Confidence            367999999999999999999999999999999988865  555443                     12333332 388


Q ss_pred             HHHHHHHHHhccc
Q psy16850        154 DIIKEASKELQED  166 (174)
Q Consensus       154 ~~Le~~L~~~~~~  166 (174)
                      +.||+.++....-
T Consensus       138 ~~l~~~I~~~Tk~  150 (432)
T PRK06702        138 DEIVALANDKTKL  150 (432)
T ss_pred             HHHHHhCCcCCeE
Confidence            8999888765443

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.77  E-value=0.0072  Score=54.53  Aligned_cols=65  Identities=12%  Similarity=0.063  Sum_probs=52.7

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+...+||+.||++.|.+.|++++||..|...++.++.+  +|.++.                     +.++.+.-.|++
T Consensus        63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~--~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e  140 (431)
T PRK08248         63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIAS--AGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPE  140 (431)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHH
Confidence            356899999999999999999999999999999988765  333221                     466677778999


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +|++.++.
T Consensus       141 ~l~~ai~~  148 (431)
T PRK08248        141 NFEAAITD  148 (431)
T ss_pred             HHHHhcCC
Confidence            99988865

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=96.76  E-value=0.0069  Score=51.66  Aligned_cols=75  Identities=17%  Similarity=0.151  Sum_probs=53.4

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhH-HHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYV-ANDS  127 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~-aN~~  127 (174)
                      .+.++|||++|++ ++...|++++++.++++... +       ++... ..+|++.+|++++.+ +.+++++|-. +...
T Consensus        17 ~~~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~~-~-------y~~~~-~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~   86 (346)
T TIGR01141        17 GGKEVIKLNSNEN-PFGPPPKAKEALRAEADKLH-R-------YPDPD-PAELKQALADYYGVDPEQILLGNGSDEIIEL   86 (346)
T ss_pred             CCCceEEccCCCC-CCCCCHHHHHHHHHhHHHhh-c-------CCCCC-HHHHHHHHHHHhCcChHHEEEcCCHHHHHHH
Confidence            3457999999999 99999999999998764321 1       11112 379999999999953 4577777765 4446


Q ss_pred             HHHHhcc
Q psy16850        128 TLFTLGK  134 (174)
Q Consensus       128 ~i~aL~~  134 (174)
                      ++.+|..
T Consensus        87 ~~~~l~~   93 (346)
T TIGR01141        87 LIRAFLE   93 (346)
T ss_pred             HHHHhcC
Confidence            6666654

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=96.70  E-value=0.0088  Score=52.39  Aligned_cols=64  Identities=17%  Similarity=0.130  Sum_probs=49.5

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+.+||+.||++.|.+.+++++||..|...++. +.+  +|.++.                     +.+..+...|++
T Consensus        51 ~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~~-ll~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~  127 (366)
T PRK08247         51 NPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVMS-LFR--SGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLK  127 (366)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHH-HhC--CCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHH
Confidence            46799999999999999999999999998887765 443  343322                     345566667899


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +|++.++.
T Consensus       128 ~l~~~i~~  135 (366)
T PRK08247        128 AIEQAITP  135 (366)
T ss_pred             HHHHhccc
Confidence            99888865

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=96.68  E-value=0.033  Score=49.92  Aligned_cols=110  Identities=14%  Similarity=-0.007  Sum_probs=75.9

Q ss_pred             ecCCeeEEEeccCcc-cCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSNDY-LGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~SndY-LGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~a  124 (174)
                      ..+|+++|+|.|.-. ..|.+ ||+|.+|+.+.+++... .      .-.++...+|-++|++.+ +.+.+.+.+||-.|
T Consensus        49 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~------~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA  121 (428)
T PRK12389         49 DVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVL-Y------GTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEA  121 (428)
T ss_pred             eCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc-c------CCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHH
Confidence            367899999865521 22443 99999999999876322 1      124567788888888876 45788899999999


Q ss_pred             HHHHHHHhcc---c---------CCC-----------------------Cee--EEEEEEecCCCHHHHHHHHHHhc
Q psy16850        125 NDSTLFTLGK---M---------IPY-----------------------FTE--LIYFYRFLANTTDIIKEASKELQ  164 (174)
Q Consensus       125 N~~~i~aL~~---~---------~~g-----------------------~~~--s~~~~~f~HNd~~~Le~~L~~~~  164 (174)
                      |-..|..-..   +         ..|                       ...  ...+.+++|||++.||+.|++..
T Consensus       122 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~  198 (428)
T PRK12389        122 VMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWG  198 (428)
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcC
Confidence            9998873321   0         011                       100  12567899999999999997654

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=96.66  E-value=0.0051  Score=53.87  Aligned_cols=64  Identities=17%  Similarity=0.182  Sum_probs=55.1

Q ss_pred             cccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         61 DYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        61 dYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      -.||-+. .|++++++.++++.|          .+...+.+++|+.+|+++|.+.++++++|..|+..++.++..
T Consensus        18 t~~g~s~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~   82 (363)
T TIGR01437        18 TILGVSTVSDEVADAQKRGAQNY----------FEIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVIT   82 (363)
T ss_pred             ecCCCCCCCHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhc
Confidence            5788886 888999998887654          245688999999999999999999999999999999999865

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=96.65  E-value=0.0088  Score=53.16  Aligned_cols=64  Identities=17%  Similarity=0.013  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +..++||+.+|++.|.+.+++++||..|+..++.+|++  +|++..                     +.+..+...+.++
T Consensus        65 pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~--~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~  142 (394)
T PRK07050         65 PTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVK--AGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAG  142 (394)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhC--CCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHH
Confidence            45799999999999999999999999999999999876  454432                     3555666666777


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.++.
T Consensus       143 l~~~i~~  149 (394)
T PRK07050        143 IADLIQP  149 (394)
T ss_pred             HHHhcCC
Confidence            7777653

>PRK07049 methionine gamma-lyase; Validated

Probab=96.62  E-value=0.012  Score=52.86  Aligned_cols=66  Identities=21%  Similarity=0.176  Sum_probs=51.4

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEec-CCCH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFL-ANTT  153 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~-HNd~  153 (174)
                      .+.+..||+.||++.|.+++++++||..|...++.++++  +|.+..                     +.++.|. +.|+
T Consensus        82 ~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~--~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~  159 (427)
T PRK07049         82 HPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVR--PGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSE  159 (427)
T ss_pred             CcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCH
Confidence            356899999999999999999999999999999999876  333221                     2344553 6788


Q ss_pred             HHHHHHHHHh
Q psy16850        154 DIIKEASKEL  163 (174)
Q Consensus       154 ~~Le~~L~~~  163 (174)
                      ++|++.+.+.
T Consensus       160 ~~l~~~l~~~  169 (427)
T PRK07049        160 AAIGAAAEAA  169 (427)
T ss_pred             HHHHHHHHhh
Confidence            9998888643

>PLN02509 cystathionine beta-lyase

Probab=96.61  E-value=0.0091  Score=54.58  Aligned_cols=63  Identities=22%  Similarity=0.150  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +.+++||+.+|++.|.+.+++|+||..| +.++.++.+  +|+++.                     +.++.+.++|+++
T Consensus       133 pt~~aLE~~lA~leg~e~ai~~~SG~aA-i~~il~ll~--~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~  209 (464)
T PLN02509        133 PTRDALESLLAKLDKADRAFCFTSGMAA-LSAVTHLIK--NGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDE  209 (464)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcHHHH-HHHHHHHhC--CCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHH
Confidence            5799999999999999999999999865 555556654  343322                     4667788999999


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.+..
T Consensus       210 l~~ai~~  216 (464)
T PLN02509        210 VAAAIGP  216 (464)
T ss_pred             HHHhCCc
Confidence            9888753

>KOG1401|consensus

Probab=96.57  E-value=0.016  Score=52.23  Aligned_cols=112  Identities=21%  Similarity=0.213  Sum_probs=84.8

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh---CCCcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH---QKEAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~---g~e~al~f~sG  121 (174)
                      -.+|+++|+|+|-   .-+|=+ ||+|.+++.+...++|..+.+     +++-...+||+.|.+..   ..+.+.+++||
T Consensus        52 D~~g~EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~-----~~t~eav~l~~~l~~~~~~~~~~rvff~nsG  125 (433)
T KOG1401|consen   52 DPDGKEYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNG-----YFTLEAVELEEVLSAVLGKGSAERVFFCNSG  125 (433)
T ss_pred             cCCcceeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCc-----cccHHHHHHHHHHHhcccCCCccEEEEecCC
Confidence            3688999999884   445555 999999999988888865432     23445889999999999   77888999999


Q ss_pred             hHHHHHHHHHhccc------------------------------------CCCCeeEEEEEEecCCCHHHHHHHHHHhcc
Q psy16850        122 YVANDSTLFTLGKM------------------------------------IPYFTELIYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       122 y~aN~~~i~aL~~~------------------------------------~~g~~~s~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                      ..||-++|..=.+.                                    +|..+.+-.+..+.-||+++|++.++....
T Consensus       126 TeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~  205 (433)
T KOG1401|consen  126 TEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG  205 (433)
T ss_pred             cHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCC
Confidence            99999988643220                                    111222336778889999999999998873

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=96.52  E-value=0.026  Score=47.86  Aligned_cols=39  Identities=18%  Similarity=0.070  Sum_probs=35.8

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~  133 (174)
                      ..+.+.++|+.||+++|.+.+++++||..|+..++.++.
T Consensus        16 ~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~   54 (352)
T cd00616          16 LGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALG   54 (352)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcC
Confidence            447899999999999999999999999999999999883

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=96.51  E-value=0.028  Score=48.37  Aligned_cols=73  Identities=19%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHHHH-
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDSTL-  129 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~i-  129 (174)
                      ..+|+|++|++. +..+|.+++++.++++..+..         ...-+.+|.+.+|++++.+ +.+++++|....+..+ 
T Consensus        29 ~~~i~l~~n~~~-~~~~~~v~~a~~~~~~~~~~~---------p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~   98 (359)
T PRK03158         29 EKIVKLASNENP-YGPSPKVKEAIAAHLDELALY---------PDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMIS   98 (359)
T ss_pred             CceEEecCCCCC-CCCCHHHHHHHHHHHHHhhcC---------CCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHH
Confidence            368999999876 777999999998887653311         1123788999999999853 4688888877766544 


Q ss_pred             HHhcc
Q psy16850        130 FTLGK  134 (174)
Q Consensus       130 ~aL~~  134 (174)
                      .++.+
T Consensus        99 ~~~~~  103 (359)
T PRK03158         99 RALLN  103 (359)
T ss_pred             HHHhC
Confidence            45544

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=96.46  E-value=0.015  Score=50.74  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=35.9

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~  133 (174)
                      -+..+++|+++|+|+|.+.|+.++||..|...++.+|.
T Consensus        24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~   61 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALG   61 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcC
Confidence            47899999999999999999999999999999999975

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.46  E-value=0.015  Score=52.54  Aligned_cols=66  Identities=20%  Similarity=-0.022  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +...+||+.||++.|.+.|++++||..|+..++.+|.+  +|+++.                     +.+..+.=+|+++
T Consensus        64 p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~--~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~  141 (433)
T PRK08134         64 PTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMG--AGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDG  141 (433)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHH
Confidence            77999999999999999999999999999988887754  444332                     2344444468888


Q ss_pred             HHHHHHHhc
Q psy16850        156 IKEASKELQ  164 (174)
Q Consensus       156 Le~~L~~~~  164 (174)
                      ||+.|....
T Consensus       142 l~~~i~~~T  150 (433)
T PRK08134        142 WRAAIRPNT  150 (433)
T ss_pred             HHHhcCCCC
Confidence            888886533

>PRK07671 cystathionine beta-lyase; Provisional

Probab=96.42  E-value=0.017  Score=51.02  Aligned_cols=64  Identities=22%  Similarity=0.144  Sum_probs=48.5

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+...+||+.||++.|.+.+++++||..|...++. +.+  +|.++.                     +.++.+...|++
T Consensus        49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~--~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~  125 (377)
T PRK07671         49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFS--SGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLE  125 (377)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhC--CCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHH
Confidence            46789999999999999999999999987776664 443  233221                     456667778888


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +|++.++.
T Consensus       126 ~l~~ai~~  133 (377)
T PRK07671        126 EVEEAIRP  133 (377)
T ss_pred             HHHHhcCC
Confidence            88888764

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.42  E-value=0.017  Score=52.36  Aligned_cols=66  Identities=17%  Similarity=0.102  Sum_probs=50.7

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEec-CCCH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFL-ANTT  153 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~-HNd~  153 (174)
                      .+..++||+.||++.|.+.+++|+||..|+..++.++.+  +|.++.                     +.+..+. -+|+
T Consensus        68 ~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~--~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~  145 (437)
T PRK05613         68 NPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAG--AGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDP  145 (437)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcC--CCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCH
Confidence            477899999999999999999999999999988888765  344332                     2444443 4578


Q ss_pred             HHHHHHHHHh
Q psy16850        154 DIIKEASKEL  163 (174)
Q Consensus       154 ~~Le~~L~~~  163 (174)
                      ++|++.|+..
T Consensus       146 e~l~~~l~~~  155 (437)
T PRK05613        146 ESWQAAVQPN  155 (437)
T ss_pred             HHHHHhCCcc
Confidence            8888877654

>PRK07046 aminotransferase; Validated

Probab=96.36  E-value=0.023  Score=51.65  Aligned_cols=107  Identities=16%  Similarity=-0.049  Sum_probs=77.6

Q ss_pred             ecCCeeEEEeccCc-ccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         48 TDSEKEVTVYCSND-YLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        48 ~~~g~~~inf~Snd-YLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      ..+|+++|+|.+.- -+.|.+ ||+|.+|+.+.+++ |+..      ...++...+|.++|++.++.+.+.+++||-.||
T Consensus        71 D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~-~~~~------~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~  143 (453)
T PRK07046         71 DVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARR-GLTT------MLPSEDAAWVGEELARRFGLPYWQVATTATDAN  143 (453)
T ss_pred             eCCCCEEEEecccccccccCCCCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHH
Confidence            46889999987552 334443 89999999999876 3221      234678889999999999999999999999999


Q ss_pred             HHHHHHhcc---c---------CCCC----------------------e--eEEEEEEecCCCHHHHHHHHH
Q psy16850        126 DSTLFTLGK---M---------IPYF----------------------T--ELIYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       126 ~~~i~aL~~---~---------~~g~----------------------~--~s~~~~~f~HNd~~~Le~~L~  161 (174)
                      ...|..--.   +         ..|.                      .  ....+..+++||.+.||+++.
T Consensus       144 e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~  215 (453)
T PRK07046        144 RFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALA  215 (453)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhC
Confidence            998874221   0         1111                      0  012457789999999999984

>PRK07480 putative aminotransferase; Validated

Probab=96.31  E-value=0.021  Score=51.86  Aligned_cols=81  Identities=11%  Similarity=0.035  Sum_probs=62.2

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.   .=||-+ ||+|.+|+.+.+++....+.   .....++...+|.++|++.++  .+.+.+.+||.
T Consensus        46 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~---~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  121 (456)
T PRK07480         46 DSEGNKILDGMAGLWCVNVGYG-RKELADAAARQMRELPYYNT---FFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGS  121 (456)
T ss_pred             eCCCCEEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcCCccc---ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence            3679999999764   224544 99999999999987653321   222357889999999999984  46899999999


Q ss_pred             HHHHHHHHHh
Q psy16850        123 VANDSTLFTL  132 (174)
Q Consensus       123 ~aN~~~i~aL  132 (174)
                      .||-+.|..-
T Consensus       122 eA~e~AlklA  131 (456)
T PRK07480        122 EANDTVLRMV  131 (456)
T ss_pred             HHHHHHHHHH
Confidence            9999998743

>PRK09028 cystathionine beta-lyase; Provisional

Probab=96.30  E-value=0.024  Score=50.78  Aligned_cols=64  Identities=16%  Similarity=0.070  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +.+.+||+.||++.|.+.+++|+||..|...++.+|.+  +|+++.                     +.+..+...|.+.
T Consensus        61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~--~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~  138 (394)
T PRK09028         61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLK--AGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEG  138 (394)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHH
Confidence            45789999999999999999999999999999988875  454432                     3445566777788


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.+..
T Consensus       139 l~~~l~~  145 (394)
T PRK09028        139 IRELIRP  145 (394)
T ss_pred             HHHhcCc
Confidence            8877754

>PRK07503 methionine gamma-lyase; Provisional

Probab=96.28  E-value=0.024  Score=50.47  Aligned_cols=64  Identities=23%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +...+||+.||+++|.+.+++|+||..|...++.++.+  +|++..                     +.+....=.|++.
T Consensus        65 p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~--~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~  142 (403)
T PRK07503         65 PTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLR--PGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAA  142 (403)
T ss_pred             chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC--CCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHH
Confidence            56899999999999999999999999999888888865  444322                     3444444567888


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.++.
T Consensus       143 l~~~i~~  149 (403)
T PRK07503        143 LKAAISD  149 (403)
T ss_pred             HHHhcCc
Confidence            8877754

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=96.27  E-value=0.024  Score=49.97  Aligned_cols=63  Identities=19%  Similarity=0.104  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +..++||+.||+++|.+.+++|+||..|...++. +.+  +|.++.                     +.++...-.|+++
T Consensus        47 p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll~--~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~  123 (378)
T TIGR01329        47 PTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LLN--NGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDK  123 (378)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhC--CCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHH
Confidence            4589999999999999999999999987766665 544  343322                     3455666678888


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      +|+.++.
T Consensus       124 le~~i~~  130 (378)
T TIGR01329       124 VKAALGP  130 (378)
T ss_pred             HHHhcCc
Confidence            8887753

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=96.24  E-value=0.049  Score=47.49  Aligned_cols=64  Identities=14%  Similarity=-0.026  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE-----------------EEEEE------ecCCC
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL-----------------IYFYR------FLANT  152 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s-----------------~~~~~------f~HNd  152 (174)
                      +...+||+++|+|+|.+.+++++||..|...++.+| .+  +|..+.                 ++++.      -...|
T Consensus        29 ~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~--~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d  106 (380)
T TIGR03588        29 PTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVG--PGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNID  106 (380)
T ss_pred             hhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCC--CCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcC
Confidence            558999999999999999999999999999999888 33  333322                 12221      12468


Q ss_pred             HHHHHHHHHH
Q psy16850        153 TDIIKEASKE  162 (174)
Q Consensus       153 ~~~Le~~L~~  162 (174)
                      +++||+.+.+
T Consensus       107 ~~~l~~~i~~  116 (380)
T TIGR03588       107 EDALEKKLAA  116 (380)
T ss_pred             HHHHHHHhhc
Confidence            9999999874

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=96.24  E-value=0.033  Score=50.48  Aligned_cols=77  Identities=17%  Similarity=0.033  Sum_probs=56.0

Q ss_pred             CeeEEEeccCc-ccCCCCC---ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHH
Q psy16850         51 EKEVTVYCSND-YLGMSCH---PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAND  126 (174)
Q Consensus        51 g~~~inf~Snd-YLGL~~~---p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~  126 (174)
                      |..+++|.+-| |+.|-++   ..+.+++.+++..=-.+       ++...-..+||+.+|+++|.+.+++.++|-.|+.
T Consensus        10 g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~~-------Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~   82 (431)
T cd00617          10 GYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDEA-------YAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAEN   82 (431)
T ss_pred             CCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCCc-------cCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHH
Confidence            44455665555 5666665   37777777777521122       2223336799999999999999999999999999


Q ss_pred             HHHHHhcc
Q psy16850        127 STLFTLGK  134 (174)
Q Consensus       127 ~~i~aL~~  134 (174)
                      .++.++++
T Consensus        83 la~~al~~   90 (431)
T cd00617          83 ILFSILLK   90 (431)
T ss_pred             HHHHHhCC
Confidence            99999976

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=96.10  E-value=0.051  Score=49.67  Aligned_cols=80  Identities=21%  Similarity=0.191  Sum_probs=63.5

Q ss_pred             ecCCeeEEEeccC-cccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN-DYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn-dYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sGy  122 (174)
                      -++|+.+|+|.|. +=+.+.+ ||+|++|+.+-++++.  ...++.+.  .+...++-++|.+.+..   ..+++.+||-
T Consensus        52 DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~--h~~~~~~~--~e~~v~~ae~L~~~~p~~~~~~~~f~~sGa  127 (447)
T COG0160          52 DVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN--HTHTRDLY--YEPYVELAEKLTALAPGSGLKKVFFGNSGA  127 (447)
T ss_pred             eCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh--cccCCccc--chhHHHHHHHHHHhCCcccCCeEEecCCcH
Confidence            4689999999985 6777776 9999999999888866  22334443  37888888888887764   5689999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||=..|..
T Consensus       128 eA~E~AiKi  136 (447)
T COG0160         128 EAVEAAIKI  136 (447)
T ss_pred             HHHHHHHHH
Confidence            999999873

>PRK06148 hypothetical protein; Provisional

Probab=96.09  E-value=0.025  Score=56.26  Aligned_cols=78  Identities=15%  Similarity=0.096  Sum_probs=62.1

Q ss_pred             ecCCeeEEEeccCcccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSNDYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~SndYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~a  124 (174)
                      ..+|+++|+|.++ +..|.+ ||+|.+|+.+.+++..+.+   +.   .++...+|-++|++.+..  +.+.+.+||-.|
T Consensus       620 D~dG~~ylD~~~g-~~~lGH~hp~v~~Ai~~q~~~l~~~~---~~---~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA  692 (1013)
T PRK06148        620 DNRGRAYLDCFNN-VCHVGHAHPRVVAAAARQAARLNTNT---RY---LHDAIVAYAERLTATLPDGLTVAFFVNSGSEA  692 (1013)
T ss_pred             ECCCCEEEEcccC-hhhcCCCCHHHHHHHHHHHhhcCCcC---Cc---CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHH
Confidence            4689999999987 577776 9999999999998754322   22   357788888999998753  678999999999


Q ss_pred             HHHHHHHh
Q psy16850        125 NDSTLFTL  132 (174)
Q Consensus       125 N~~~i~aL  132 (174)
                      |-+.|..-
T Consensus       693 ~e~AlklA  700 (1013)
T PRK06148        693 NSLALRLA  700 (1013)
T ss_pred             HHHHHHHH
Confidence            99998743

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=96.07  E-value=0.033  Score=50.19  Aligned_cols=78  Identities=21%  Similarity=0.183  Sum_probs=60.3

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG  121 (174)
                      ..+|+++|+|.|.   .=||-+ ||+|.+|+.+.+++... ..   ...+..+...+|-++|++.+..   +.+.+++||
T Consensus        52 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~-~~---~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sG  126 (443)
T PRK06058         52 DVDGNRLIDLGSGIAVTSVGNS-APRVVEAVREQVARFTH-TC---FMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSG  126 (443)
T ss_pred             eCCCCEEEEcCcchhhhccCCC-CHHHHHHHHHHHHhccC-cc---ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCc
Confidence            4689999999774   345633 99999999999987532 11   1223567888999999998752   578999999


Q ss_pred             hHHHHHHHH
Q psy16850        122 YVANDSTLF  130 (174)
Q Consensus       122 y~aN~~~i~  130 (174)
                      -.||-+.|.
T Consensus       127 seA~e~Alk  135 (443)
T PRK06058        127 AEAVENAVK  135 (443)
T ss_pred             HHHHHHHHH
Confidence            999999988

>PRK06225 aspartate aminotransferase; Provisional

Probab=96.04  E-value=0.09  Score=45.70  Aligned_cols=78  Identities=13%  Similarity=0.017  Sum_probs=56.3

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDS  127 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~  127 (174)
                      ++.++|+|+.|+- .+..+|++.+++.+++...+..      .++...-+.+|.+.+|+++|.+  ..++.++|..++..
T Consensus        26 ~~~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~   98 (380)
T PRK06225         26 KDKEMIWMGQNTN-HLGPHEEVREAMIRCIEEGEYC------KYPPPEGFPELRELILKDLGLDDDEALITAGATESLYL   98 (380)
T ss_pred             hcCCeEEccCCCC-CCCCCHHHHHHHHHHHhcCCCC------CCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHH
Confidence            3457899998875 3556899999998887642211      1233334788999999999864  47777888888888


Q ss_pred             HHHHhcc
Q psy16850        128 TLFTLGK  134 (174)
Q Consensus       128 ~i~aL~~  134 (174)
                      ++.++++
T Consensus        99 ~~~~~~~  105 (380)
T PRK06225         99 VMRAFLS  105 (380)
T ss_pred             HHHHhcC
Confidence            8888765

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=95.96  E-value=0.054  Score=46.25  Aligned_cols=89  Identities=21%  Similarity=0.091  Sum_probs=58.3

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc---EEEecchhHHHHHHHHHhcccCCCCeeE--
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA---GLVFTSCYVANDSTLFTLGKMIPYFTEL--  142 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~---al~f~sGy~aN~~~i~aL~~~~~g~~~s--  142 (174)
                      .+.+.+++.+++.++-.+.   |-. +....++++|+.+|+++|.+.   +++++||..++..++.++.+  +|....  
T Consensus         7 ~~~~~~~v~~a~~~~~~~~---~~~-~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~--~g~~vl~~   80 (356)
T cd06451           7 PSNVPPRVLKAMNRPMLGH---RSP-EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLE--PGDKVLVG   80 (356)
T ss_pred             CcCCCHHHHHHhCCCccCC---CCH-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCC--CCCEEEEe
Confidence            4455567777765433221   111 234678999999999999732   56778889999999999875  232221  


Q ss_pred             -----------------EEEEEe-----cCCCHHHHHHHHHH
Q psy16850        143 -----------------IYFYRF-----LANTTDIIKEASKE  162 (174)
Q Consensus       143 -----------------~~~~~f-----~HNd~~~Le~~L~~  162 (174)
                                       ++++..     .+.|.++|++.++.
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~  122 (356)
T cd06451          81 VNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ  122 (356)
T ss_pred             cCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc
Confidence                             122332     37889999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=95.95  E-value=0.065  Score=46.92  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             cCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE-----------------EEEEEec-----
Q psy16850         93 SGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL-----------------IYFYRFL-----  149 (174)
Q Consensus        93 ~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s-----------------~~~~~f~-----  149 (174)
                      +|..+..+++|+.+|+++|.+.++++++|..|...++.++ .+  +|.++.                 +.++.+.     
T Consensus        27 ~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~--~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~  104 (375)
T PRK11706         27 CGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQ--PGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDT  104 (375)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCC--CCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCc
Confidence            4666889999999999999999999999999965555444 33  344332                 1333332     


Q ss_pred             -CCCHHHHHHHHHH
Q psy16850        150 -ANTTDIIKEASKE  162 (174)
Q Consensus       150 -HNd~~~Le~~L~~  162 (174)
                       +.|+++||+.+..
T Consensus       105 ~~~d~~~le~~i~~  118 (375)
T PRK11706        105 MNIDETLIEAAITP  118 (375)
T ss_pred             CCcCHHHHHHhcCC
Confidence             5689999988764

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=95.91  E-value=0.045  Score=49.47  Aligned_cols=79  Identities=15%  Similarity=0.077  Sum_probs=60.1

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++...++.   . .-.++...+|-++|++.+  +.+.+.+.+||-
T Consensus        42 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~---~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGs  116 (442)
T PRK13360         42 THDGRRVLDGTAGLWCVNAGHG-RPEIVEAVRAQAGELDYAPA---F-QMGHPKAFELANRIAEIAPGGLNHVFFTNSGS  116 (442)
T ss_pred             eCCCCEEEECchhHHHhccCCC-CHHHHHHHHHHHHhCCCccc---C-CcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence            3679999999765   224443 99999999999988654432   1 223577788999999987  357889999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.+..
T Consensus       117 eA~e~Alkl  125 (442)
T PRK13360        117 ESVDTALKI  125 (442)
T ss_pred             HHHHHHHHH
Confidence            999998874

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=95.89  E-value=0.03  Score=48.16  Aligned_cols=68  Identities=21%  Similarity=0.147  Sum_probs=47.9

Q ss_pred             CCccchHHHHHHHHHcC--CCccccccccCCchHHHHHHHHHHHHhCCCc---EEEecchhHHHHHHHHHhcc
Q psy16850         67 CHPKVKSAVREALEKFG--TGAGGTRNISGNSLFHEKLEEDVARLHQKEA---GLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G--~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~---al~f~sGy~aN~~~i~aL~~  134 (174)
                      ..+.+++++.+.++.++  .+.+..+...+....+.++++.||+++|.++   .++.++|..++..++.++.+
T Consensus        12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~   84 (376)
T TIGR01977        12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLK   84 (376)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccC
Confidence            34678999999988875  2333333333345789999999999999764   34556777787778887754

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK09082 methionine aminotransferase; Validated

Probab=95.86  E-value=0.16  Score=44.31  Aligned_cols=105  Identities=12%  Similarity=0.052  Sum_probs=66.9

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC----cEEEe-cchhHHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE----AGLVF-TSCYVAND  126 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e----~al~f-~sGy~aN~  126 (174)
                      ..+|+|+.++ ..+..+|.+.+++.++++..-.+.   ....|...+.+.+.+.+++++|..    ..+++ +.|..+..
T Consensus        30 ~~~i~l~~g~-~~~~~~~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~  105 (386)
T PRK09082         30 HGAINLSQGF-PDFDGPPYLVEALAYAMAAGHNQY---PPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALF  105 (386)
T ss_pred             CCEEEecCCC-CCCCCCHHHHHHHHHHHHcCCCCC---CCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHH
Confidence            4578998853 445557888888888765321111   113577788888888888888862    24555 54577888


Q ss_pred             HHHHHhcccCCCCeeE-----------------EEEEEecCC------CHHHHHHHHHH
Q psy16850        127 STLFTLGKMIPYFTEL-----------------IYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       127 ~~i~aL~~~~~g~~~s-----------------~~~~~f~HN------d~~~Le~~L~~  162 (174)
                      .++.++++  +|....                 ++++.++..      |+++|++.++.
T Consensus       106 ~~~~~~~~--~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  162 (386)
T PRK09082        106 AAILALVR--PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISP  162 (386)
T ss_pred             HHHHHHcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCc
Confidence            88888865  443222                 245555543      67888877754

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=95.85  E-value=0.042  Score=48.60  Aligned_cols=42  Identities=21%  Similarity=0.075  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~  141 (174)
                      +...+||++||++.|.+.|++|+||..|..+++. +.+  +|.++
T Consensus        50 p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~--pGd~V   91 (380)
T PRK06176         50 PTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQ--SGDHV   91 (380)
T ss_pred             hhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcC--CCCEE
Confidence            5689999999999999999999999998887775 444  45443

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=95.81  E-value=0.054  Score=48.29  Aligned_cols=64  Identities=13%  Similarity=-0.017  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +...+||+.||++.|.+.++++++|..|...++.++.+  +|.++.                     +.+..+...|+++
T Consensus        53 pt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~--~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~  130 (388)
T PRK08861         53 PNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLG--PDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAA  130 (388)
T ss_pred             chHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC--CCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence            57999999999999999999999999999999999865  444333                     2334445567888


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      +++.+..
T Consensus       131 l~~~i~~  137 (388)
T PRK08861        131 LDAALAK  137 (388)
T ss_pred             HHHhcCc
Confidence            8877754

>PRK07481 hypothetical protein; Provisional

Probab=95.78  E-value=0.049  Score=49.31  Aligned_cols=80  Identities=11%  Similarity=0.013  Sum_probs=59.9

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG  121 (174)
                      ..+|+++|+|.|   +.-||-+ ||+|.+|+.+.+++....+   +...-.++.-.+|.++|++.++   .+.+.+.+||
T Consensus        38 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~---~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sG  113 (449)
T PRK07481         38 DIDGKKLLDGVGGLWNVNVGHN-REEVKEAIVRQLDELEYYS---TFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGG  113 (449)
T ss_pred             eCCCCEEEECchhHHhhcCCCC-CHHHHHHHHHHHHhcccee---cccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCch
Confidence            368999999976   3346654 8999999999998754321   1111246788899999999883   5678889999


Q ss_pred             hHHHHHHHHH
Q psy16850        122 YVANDSTLFT  131 (174)
Q Consensus       122 y~aN~~~i~a  131 (174)
                      -.||-+.|..
T Consensus       114 sEAve~Alkl  123 (449)
T PRK07481        114 SDSVETALKL  123 (449)
T ss_pred             HHHHHHHHHH
Confidence            9999988874

>PLN02271 serine hydroxymethyltransferase

Probab=95.75  E-value=0.05  Score=51.23  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             ccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-----EEecchhHHHHHHHHHhcccCCC
Q psy16850         69 PKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-----LVFTSCYVANDSTLFTLGKMIPY  138 (174)
Q Consensus        69 p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-----l~f~sGy~aN~~~i~aL~~~~~g  138 (174)
                      |.++++.-..+ .+|.-|..|.|...|+..+ .++|.    ...+.||.+.+     +---||..||.+++.+|.+  ||
T Consensus       162 ~av~~algS~ltnkYaEG~pG~Ryy~G~~~i-D~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~--PG  238 (586)
T PLN02271        162 RAVMEALGSHLTNKYSEGMPGARYYTGNQYI-DQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLL--PG  238 (586)
T ss_pred             HHHHHHhcCcccccCCCCCCCCcCCCCChhH-HHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcC--CC
Confidence            33444443322 4688899999998886544 47753    34456675542     3344999999999999986  22


Q ss_pred             Cee-----------------------E-----EEEEEecCC------CHHHHHHHHHHhcccccc
Q psy16850        139 FTE-----------------------L-----IYFYRFLAN------TTDIIKEASKELQEDMID  169 (174)
Q Consensus       139 ~~~-----------------------s-----~~~~~f~HN------d~~~Le~~L~~~~~~~~~  169 (174)
                      +++                       +     ..+..|++|      |+++||+++.+..+..|-
T Consensus       239 D~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII  303 (586)
T PLN02271        239 DRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILI  303 (586)
T ss_pred             CEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEE
Confidence            211                       1     245577787      999999987776665543

>PRK07678 aminotransferase; Validated

Probab=95.71  E-value=0.065  Score=48.52  Aligned_cols=78  Identities=15%  Similarity=0.012  Sum_probs=58.2

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~  123 (174)
                      ..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++....+   + .. .++...+|.++|+++++.. .+.+.+||-.
T Consensus        43 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~---~-~~-~~~~~~~lae~l~~~~~~~~~v~f~~sGse  116 (451)
T PRK07678         43 DIQGNRYLDGMSGLWCVNVGYG-RKELAEAAYEQLKTLSYFP---L-TQ-SHEPAIKLAEKLNEWLGGEYVIFFSNSGSE  116 (451)
T ss_pred             eCCCCEEEEccccHHhhcCCCC-CHHHHHHHHHHHHhcCccc---c-cc-CCHHHHHHHHHHHHhCCCCCEEEEeCCcHH
Confidence            4689999999764   236644 8999999999988754322   1 12 3567789999999998654 5666689999


Q ss_pred             HHHHHHHH
Q psy16850        124 ANDSTLFT  131 (174)
Q Consensus       124 aN~~~i~a  131 (174)
                      ||-+.|..
T Consensus       117 A~e~Alkl  124 (451)
T PRK07678        117 ANETAFKI  124 (451)
T ss_pred             HHHHHHHH
Confidence            99998874

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=95.69  E-value=0.043  Score=50.36  Aligned_cols=39  Identities=18%  Similarity=-0.130  Sum_probs=32.8

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      .+-+.+||+.+|+++|++.++.++||-+|+..++.+.++
T Consensus        77 d~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~  115 (460)
T PRK13237         77 SRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIK  115 (460)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCC
Confidence            345789999999999999999999999998876555544

>PRK07482 hypothetical protein; Provisional

Probab=95.65  E-value=0.058  Score=49.02  Aligned_cols=81  Identities=10%  Similarity=-0.006  Sum_probs=60.8

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.-   -||-+ ||+|.+|+.+.+++.......   ..-.++...+|-++|++...  .+.+.+.+||-
T Consensus        46 D~dG~~ylD~~sg~~~~~lGh~-~p~v~~Av~~q~~~~~~~~~~---~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGS  121 (461)
T PRK07482         46 DAQGRRYIDAFAGLYCVNVGYG-RTEVAEAIAEQAKELAYYHTY---VGHGTEASITLSKRIIDRAPAGMSKVYYGLSGS  121 (461)
T ss_pred             ECCCCEEEEcccchhhhcCCCC-CHHHHHHHHHHHHhcCccccc---cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchH
Confidence            36899999998763   34533 999999999999875322211   11236788899999999884  57888999999


Q ss_pred             HHHHHHHHHh
Q psy16850        123 VANDSTLFTL  132 (174)
Q Consensus       123 ~aN~~~i~aL  132 (174)
                      .||-+.|..-
T Consensus       122 EAve~AlKlA  131 (461)
T PRK07482        122 DANETQIKLV  131 (461)
T ss_pred             HHHHHHHHHH
Confidence            9999988854

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=95.60  E-value=0.059  Score=45.54  Aligned_cols=67  Identities=15%  Similarity=0.034  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEE-ecchhHHHHHHHHHhcccCCCCeeEE-----------------EEEEe--------
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLV-FTSCYVANDSTLFTLGKMIPYFTELI-----------------YFYRF--------  148 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~-f~sGy~aN~~~i~aL~~~~~g~~~s~-----------------~~~~f--------  148 (174)
                      ...++.++|+.+|+++|.+.+++ .+++..+|.+++.++++  +|.++.+                 ..+..        
T Consensus        57 ~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~--~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~  134 (294)
T cd00615          57 PTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCG--PGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYY  134 (294)
T ss_pred             CChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCC--CCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCccc
Confidence            45689999999999999999987 45557899999999876  4443321                 11111        


Q ss_pred             ---cCCCHHHHHHHHHHh
Q psy16850        149 ---LANTTDIIKEASKEL  163 (174)
Q Consensus       149 ---~HNd~~~Le~~L~~~  163 (174)
                         .+.|+++||+.+++.
T Consensus       135 ~~~~~i~~~~l~~~l~~~  152 (294)
T cd00615         135 GIAGGIPPETFKKALIEH  152 (294)
T ss_pred             CcCCCCCHHHHHHHHHhC
Confidence               267899999999864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=95.60  E-value=0.06  Score=47.29  Aligned_cols=55  Identities=22%  Similarity=0.279  Sum_probs=42.2

Q ss_pred             ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850         69 PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        69 p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      ++-++++.++++. |      ....  .+...+||+.||+++|.+.++.++||..|+..++.++
T Consensus        14 ~~e~~~~~~~l~~-~------~~~~--g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al   68 (379)
T PRK11658         14 DEELAAVKEVLRS-G------WITT--GPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMAL   68 (379)
T ss_pred             HHHHHHHHHHHHc-C------CccC--CHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHc
Confidence            4446666665542 1      1112  3568999999999999999999999999999999888

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=95.58  E-value=0.05  Score=49.09  Aligned_cols=110  Identities=18%  Similarity=0.149  Sum_probs=81.3

Q ss_pred             ecCCeeEEEeccC-cccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-CCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSN-DYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-KEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~Sn-dYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-~e~al~f~sGy~a  124 (174)
                      ..+|+++|||.+. --..|.+ ||+|++|+++-+++....|   +++  +.+...+|-++|++..+ .+.+++++||-.|
T Consensus        38 D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~s---n~~--~~~~~~~la~~L~~~s~~~d~vff~NSGaEA  112 (404)
T COG4992          38 DQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVS---NLF--YNEPQAELAEKLVELSPFADRVFFCNSGAEA  112 (404)
T ss_pred             CCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcc---ccc--CChHHHHHHHHHHhhCccccEEEEcCCcHHH
Confidence            3579999998764 2233443 9999999999888866443   343  46889999999999996 9999999999999


Q ss_pred             HHHHHHHhccc---------------CCCC------------------eeEEEEEEecCCCHHHHHHHHHH
Q psy16850        125 NDSTLFTLGKM---------------IPYF------------------TELIYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       125 N~~~i~aL~~~---------------~~g~------------------~~s~~~~~f~HNd~~~Le~~L~~  162 (174)
                      |=+.|..--.-               ..|-                  ++.-.+...+-||.+.|+..+..
T Consensus       113 ~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~  183 (404)
T COG4992         113 NEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE  183 (404)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhcc
Confidence            99998753210               1111                  11124567788999999999987

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=95.47  E-value=0.082  Score=47.31  Aligned_cols=80  Identities=15%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CCC-cEEEe-
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QKE-AGLVF-  118 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~e-~al~f-  118 (174)
                      ..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++.+.-.+.    .-.++...+|-++|++.+    +.+ .+.+| 
T Consensus        35 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~----~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~  109 (425)
T PRK09264         35 DEDGKEYIDFFAGAGALNYGHN-NPVLKQALIDYLQRDGITHGL----DMHTTAKREFLETFEETILKPRGLDYKVQFTG  109 (425)
T ss_pred             eCCCCEeeecccchhhccCCCC-CHHHHHHHHHHHHhccccccc----ccCcHHHHHHHHHHHHhhcCCcCCCceEEEeC
Confidence            4689999999776   335553 999999999999886643321    123567788888888864    233 34454 


Q ss_pred             cchhHHHHHHHHHh
Q psy16850        119 TSCYVANDSTLFTL  132 (174)
Q Consensus       119 ~sGy~aN~~~i~aL  132 (174)
                      +||-.||-+.|..-
T Consensus       110 ~sGseA~e~AlklA  123 (425)
T PRK09264        110 PTGTNAVEAALKLA  123 (425)
T ss_pred             CCHHHHHHHHHHHH
Confidence            69999999998754

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=95.44  E-value=0.08  Score=48.12  Aligned_cols=79  Identities=16%  Similarity=0.070  Sum_probs=60.2

Q ss_pred             ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850         48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.-.   ||- .||+|.+|+.+.+++...++.   . .-.++...+|.++|++.+..  +.+.+.+||-
T Consensus        52 D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~l~~~~~---~-~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  126 (460)
T PRK06916         52 DVNGNEYYDGVSSIWLNVHGH-QVPELDEAIREQLNKIAHSTL---L-GLANVPSILLAEKLIEVVPEGLKKVFYSDSGA  126 (460)
T ss_pred             eCCCCEEEEcchhHHHhhcCC-CCHHHHHHHHHHHHhCCCccc---c-ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence            367999999987633   443 399999999999988653322   1 11357788999999999753  6789999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-..|..
T Consensus       127 eAve~Alkl  135 (460)
T PRK06916        127 TAVEIAIKM  135 (460)
T ss_pred             HHHHHHHHH
Confidence            999998874

>PRK07483 hypothetical protein; Provisional

Probab=95.41  E-value=0.088  Score=47.61  Aligned_cols=79  Identities=16%  Similarity=0.163  Sum_probs=59.7

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.   .=||-+ ||+|.+++.+.+++...-..+   . -.++...+|.++|++...  .+.+.+.+||-
T Consensus        26 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~av~~ql~~~~~~~~~---~-~~~~~~~~lae~L~~~~p~~~~~v~f~~sGs  100 (443)
T PRK07483         26 DATGKRYLDASGGAAVSCLGHS-HPRVIAAIHAQIDRLAYAHTS---F-FTTEPAEALADRLVAAAPAGLEHVYFVSGGS  100 (443)
T ss_pred             eCCCCEEEEcCccHhhhccCCC-CHHHHHHHHHHHHhccCcccc---c-cCCHHHHHHHHHHHHhCCCCCCEEEEcCCcH
Confidence            4689999999873   335544 899999999999875421111   1 135778899999999874  57899999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-..|..
T Consensus       101 EAve~Alkl  109 (443)
T PRK07483        101 EAVEAALKL  109 (443)
T ss_pred             HHHHHHHHH
Confidence            999998874

>PRK06434 cystathionine gamma-lyase; Validated

Probab=95.40  E-value=0.035  Score=49.49  Aligned_cols=45  Identities=29%  Similarity=0.191  Sum_probs=39.4

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL  142 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s  142 (174)
                      .+..++||+.+|++.|.+.|++|+||..|...++.+|.+  +|+++.
T Consensus        63 ~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all~--~GD~Vl  107 (384)
T PRK06434         63 NPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIK--KGKRIL  107 (384)
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEE
Confidence            478899999999999999999999999999988888865  666654

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=95.38  E-value=0.093  Score=47.39  Aligned_cols=79  Identities=19%  Similarity=0.101  Sum_probs=58.2

Q ss_pred             ecCCeeEEEeccCcc-cCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSNDY-LGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~SndY-LGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.-. +.|.+ ||+|.+|+.+.+++....+. +..   .++...+|-++|++.+.   .+.+.+.+||-
T Consensus        50 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-~~~---~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGs  125 (441)
T PRK05769         50 DVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSL-TDF---YYEPAVELAERLVEIAPGGFEKKVFFTNSGT  125 (441)
T ss_pred             eCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccC-ccc---CCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence            468999999987743 22333 89999999999987543211 111   24677888888888875   46788899999


Q ss_pred             HHHHHHHH
Q psy16850        123 VANDSTLF  130 (174)
Q Consensus       123 ~aN~~~i~  130 (174)
                      .||-..|.
T Consensus       126 EA~e~Alk  133 (441)
T PRK05769        126 ESNEAAIK  133 (441)
T ss_pred             HHHHHHHH
Confidence            99998886

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=95.36  E-value=0.085  Score=48.09  Aligned_cols=80  Identities=10%  Similarity=0.032  Sum_probs=60.9

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.-   -||-+ ||+|.+|+.+.+++....+.. .   -.++...+|-++|++.+.  .+.+.+.+||-
T Consensus        43 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~~~~~~-~---~~~~~~~~lae~L~~~~p~~~~~v~f~~sGs  117 (466)
T PRK07030         43 DFEGKRYLDAVSSWWVNVFGHA-NPRINQRIKDQVDQLEHVILA-G---FSHEPVIELSERLVKITPPGLSRCFYADNGS  117 (466)
T ss_pred             ECCCCEEEEcchhHHhhcCCCC-CHHHHHHHHHHHHhcCCcccc-c---cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence            46899999997763   24444 899999999999886533321 1   135788899999999873  46788999999


Q ss_pred             HHHHHHHHHh
Q psy16850        123 VANDSTLFTL  132 (174)
Q Consensus       123 ~aN~~~i~aL  132 (174)
                      .||-..+..-
T Consensus       118 EAve~AlKlA  127 (466)
T PRK07030        118 SAIEVALKMS  127 (466)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=95.35  E-value=0.098  Score=47.20  Aligned_cols=79  Identities=19%  Similarity=0.139  Sum_probs=59.3

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG  121 (174)
                      ..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++....+ ....   .++...+|-++|++.+..   +.+.+.+||
T Consensus        50 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~-~~~~---~~~~~~~la~~L~~~~p~~~~~~v~f~~sG  124 (451)
T PRK06918         50 DVDGNQYIDFAGAIGTINVGHS-HPKVKEALHKQVDQYIHTG-FNVM---MYEPYIELAEKLAALAPGSFDKKVLFLNSG  124 (451)
T ss_pred             eCCCCEEEEcCCchhhcCCCCC-CHHHHHHHHHHHHhccCcc-cccc---ccHHHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence            3689999999765   224533 9999999999998754221 1111   357788999999999853   578999999


Q ss_pred             hHHHHHHHHH
Q psy16850        122 YVANDSTLFT  131 (174)
Q Consensus       122 y~aN~~~i~a  131 (174)
                      -.||-+.|..
T Consensus       125 seA~e~Alkl  134 (451)
T PRK06918        125 AEAVENAVKI  134 (451)
T ss_pred             HHHHHHHHHH
Confidence            9999999874

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.34  E-value=0.056  Score=48.34  Aligned_cols=65  Identities=17%  Similarity=0.131  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE----------------------EEEE--EecCCC
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL----------------------IYFY--RFLANT  152 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s----------------------~~~~--~f~HNd  152 (174)
                      +..+++|+++|+|+|.+.|+.++||..|..-.+-+|. +.||+.+-                      +++.  .|. =|
T Consensus        34 ~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~-ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~n-id  111 (374)
T COG0399          34 PFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALA-IGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLN-ID  111 (374)
T ss_pred             hHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcC-CCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccC-CC
Confidence            6689999999999999999999999999999999776 44666432                      1222  333 48


Q ss_pred             HHHHHHHHHHh
Q psy16850        153 TDIIKEASKEL  163 (174)
Q Consensus       153 ~~~Le~~L~~~  163 (174)
                      ++.||..+...
T Consensus       112 ~~~ie~aIt~~  122 (374)
T COG0399         112 PDLIEAAITPR  122 (374)
T ss_pred             HHHHHHHcccC
Confidence            99999888775

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=95.32  E-value=0.1  Score=46.61  Aligned_cols=66  Identities=17%  Similarity=0.105  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEE---------------------EEEEecCCCH
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELI---------------------YFYRFLANTT  153 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~---------------------~~~~f~HNd~  153 (174)
                      ..+..++||+.||++.|.+.+++++||..|...++.++.+  +|.++.+                     .+....=.|+
T Consensus        58 ~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all~--pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~  135 (405)
T PRK08776         58 GNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALLQ--PGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDP  135 (405)
T ss_pred             CChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHhC--CCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCH
Confidence            3466799999999999999999999999888888888865  4554431                     2233333577


Q ss_pred             HHHHHHHHH
Q psy16850        154 DIIKEASKE  162 (174)
Q Consensus       154 ~~Le~~L~~  162 (174)
                      ++|++.++.
T Consensus       136 ~~l~~~i~~  144 (405)
T PRK08776        136 RSLADALAQ  144 (405)
T ss_pred             HHHHHhcCc
Confidence            788777754

>PRK06541 hypothetical protein; Provisional

Probab=95.30  E-value=0.1  Score=47.44  Aligned_cols=79  Identities=15%  Similarity=-0.045  Sum_probs=61.2

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++.+.... .   ...++...+|-++|++...  .+.+.+.+||-
T Consensus        48 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Av~~q~~~~~~~~~-~---~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGs  122 (460)
T PRK06541         48 DDRGKRYLDGLAGLFVVQVGHG-RAELAEAAAKQAGTLAFFPL-W---SYAHPPAIELAERLAALAPGDLNRVFFTTGGS  122 (460)
T ss_pred             eCCCCEEEECCccHHhccCCCC-CHHHHHHHHHHHhhCcCccc-c---ccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcH
Confidence            3679999999774   347766 89999999999988654322 1   1245778889999999874  36889999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.|..
T Consensus       123 eAve~Alkl  131 (460)
T PRK06541        123 EAVESAWKL  131 (460)
T ss_pred             HHHHHHHHH
Confidence            999988874

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=95.22  E-value=0.12  Score=45.92  Aligned_cols=64  Identities=11%  Similarity=0.005  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +...+||+.||++.|.+.+++++||..|...++.++.+  +|+++.                     +.+..+...|+++
T Consensus        52 pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~--~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~  129 (386)
T PRK08045         52 PTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQA  129 (386)
T ss_pred             ccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC--CCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHH
Confidence            56899999999999999999999999999999988875  444332                     1333344567888


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.++.
T Consensus       130 l~~~l~~  136 (386)
T PRK08045        130 LRAALAE  136 (386)
T ss_pred             HHHhccc
Confidence            8877754

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=95.21  E-value=0.12  Score=47.02  Aligned_cols=79  Identities=20%  Similarity=0.121  Sum_probs=59.0

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++....+.+    ..+++...+|-++|++..+.  +.+.+.+||-
T Consensus        49 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~ql~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  123 (457)
T PRK05639         49 DVDGNVFIDFLAGAAAASTGYS-HPKLVKAVQEQVALIQHSMIG----YTHSERAIRVAEKLAEISPIENPKVLFGLSGS  123 (457)
T ss_pred             eCCCCEEEECCcCHHhhccCCC-CHHHHHHHHHHHHhccccccC----ccCCHHHHHHHHHHHhhCCCCcCEEEEeCchH
Confidence            4689999999875   234433 999999999999875422111    11346778899999998753  5799999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.|..
T Consensus       124 EA~e~Alkl  132 (457)
T PRK05639        124 DAVDMAIKV  132 (457)
T ss_pred             HHHHHHHHH
Confidence            999998874

>PRK12414 putative aminotransferase; Provisional

Probab=95.19  E-value=0.34  Score=42.35  Aligned_cols=80  Identities=16%  Similarity=0.181  Sum_probs=54.8

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-----CcEEEecchhHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-----EAGLVFTSCYVAN  125 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-----e~al~f~sGy~aN  125 (174)
                      ...+|+|++++- .+...|.+.+++.++++. +.  ..=.-..|...+.+.+.+.+++++|.     +..+++++|..+.
T Consensus        28 ~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~-~~--~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al  103 (384)
T PRK12414         28 QHDALNLSQGAP-NFAPDPALVEGVARAMRD-GH--NQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGL  103 (384)
T ss_pred             hCCeEEcCCCCC-CCCCCHHHHHHHHHHHHh-CC--CCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHH
Confidence            345789988752 455578888888877653 21  11012246678888888888888885     3578888888887


Q ss_pred             HHHHHHhcc
Q psy16850        126 DSTLFTLGK  134 (174)
Q Consensus       126 ~~~i~aL~~  134 (174)
                      ..++.+++.
T Consensus       104 ~~~~~~l~~  112 (384)
T PRK12414        104 YAAISALVH  112 (384)
T ss_pred             HHHHHHhcC
Confidence            788888865

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=95.19  E-value=0.12  Score=46.46  Aligned_cols=79  Identities=16%  Similarity=0.173  Sum_probs=59.0

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG  121 (174)
                      ..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++......    .....+...+|-+.|++.+..   +.+.+.+||
T Consensus        36 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SG  110 (425)
T PRK07495         36 DKEGRRYIDFAAGIAVVNTGHR-HPRVIAAVKAQLDRFTHTCH----QVVPYENYVRLAERLNALVPGDFAKKTIFVTTG  110 (425)
T ss_pred             eCCCCEEEEccccHHhhccCCC-CHHHHHHHHHHHhhccCccc----CccCCHHHHHHHHHHHHhCCCCCCCEEEECCch
Confidence            4689999999775   235553 99999999999987542211    122356778888889998753   578999999


Q ss_pred             hHHHHHHHHH
Q psy16850        122 YVANDSTLFT  131 (174)
Q Consensus       122 y~aN~~~i~a  131 (174)
                      -.||-+.|..
T Consensus       111 seA~e~Alkl  120 (425)
T PRK07495        111 AEAVENAVKI  120 (425)
T ss_pred             HHHHHHHHHH
Confidence            9999998874

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=95.15  E-value=0.11  Score=46.43  Aligned_cols=79  Identities=23%  Similarity=0.201  Sum_probs=59.1

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG  121 (174)
                      ..+|+++|+|.+.   .-||-+ ||+|.+|+.+.+++.....  .  ....++...+|-++|+++..   .+.+.+++||
T Consensus        36 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~--~--~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sG  110 (421)
T PRK06777         36 DVEGREYIDFAAGIAVLNTGHR-HPKVVAAVRQQLDQFTHTA--Y--QIVPYASYVTLAERINALAPIDGPAKTAFFTTG  110 (421)
T ss_pred             eCCCCEEEEcccCHHhhccCCC-CHHHHHHHHHHHhhccccc--c--cccCChHHHHHHHHHHHhCCCCCCceEEEeCCc
Confidence            3689999999765   234544 9999999999998854221  1  11235677888899999864   4689999999


Q ss_pred             hHHHHHHHHH
Q psy16850        122 YVANDSTLFT  131 (174)
Q Consensus       122 y~aN~~~i~a  131 (174)
                      -.||-..|..
T Consensus       111 seA~e~Alkl  120 (421)
T PRK06777        111 AEAVENAVKI  120 (421)
T ss_pred             HHHHHHHHHH
Confidence            9999998874

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=95.15  E-value=0.11  Score=46.90  Aligned_cols=79  Identities=14%  Similarity=0.124  Sum_probs=60.1

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.+.   .-||-+ ||+|.+|+.+.+++......+    .-.++...+|-++|++..+  .+.+.+.+||-
T Consensus        39 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~~~----~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGs  113 (428)
T PRK07986         39 LADGRRLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVMFG----GITHPPAIELCRKLVAMTPQPLECVFLADSGS  113 (428)
T ss_pred             eCCCCEEEEcchhHHhhcCCCC-CHHHHHHHHHHHhhcCCcccc----ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcH
Confidence            3679999999875   466765 799999999999886532211    1145778888999999875  35788889999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-..|..
T Consensus       114 EAve~Alkl  122 (428)
T PRK07986        114 VAVEVAMKM  122 (428)
T ss_pred             HHHHHHHHH
Confidence            999988873

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=95.14  E-value=0.11  Score=46.81  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=60.4

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|   +.-||-+ ||+|.+|+.+.+++.+....+    .=.++...+|-++|++.+.  .+.+.+.+||-
T Consensus        40 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGs  114 (429)
T PRK06173         40 LKDGRRLIDGMSSWWAALHGYN-HPRLNAAATNQLAKMSHIMFG----GFTHEPAVELAQKLLEILPPSLNKIFFADSGS  114 (429)
T ss_pred             cCCCCEEEEccchHHhccCCCC-CHHHHHHHHHHHHhcCCcccc----ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCch
Confidence            367999999987   4466765 799999999999886522111    1135777889999999874  56788899999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.|..
T Consensus       115 eAve~Alkl  123 (429)
T PRK06173        115 VAVEVAMKM  123 (429)
T ss_pred             HHHHHHHHH
Confidence            999988874

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=95.13  E-value=0.13  Score=46.64  Aligned_cols=79  Identities=14%  Similarity=0.076  Sum_probs=60.0

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.   .-||- .||+|.+++.+.+++...++.   ... .++...+|-++|++.+.  .+.+.+.+||-
T Consensus        45 D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~---~~~-~~~~~~~la~~L~~~~p~~~~~v~f~~sGs  119 (445)
T PRK09221         45 DADGRKILDGTAGLWCCNAGH-GRPEIVEAVARQAATLDYAPA---FQM-GHPLAFELAERLAELAPGGLDHVFFTNSGS  119 (445)
T ss_pred             eCCCCEEEEccccHhhccCCC-CCHHHHHHHHHHHHhccCccc---ccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence            3689999999765   33555 399999999999988654332   111 35677889999999874  46899999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.|..
T Consensus       120 eAve~Alkl  128 (445)
T PRK09221        120 ESVDTALKI  128 (445)
T ss_pred             HHHHHHHHH
Confidence            999998874

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=95.12  E-value=0.12  Score=47.06  Aligned_cols=110  Identities=15%  Similarity=0.038  Sum_probs=77.4

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.++   .-||- .||+|.+|+.+.+++....   ++.  -.++...+|.++|++.+.  .+.+.+.+||-
T Consensus        78 D~dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~l~~~---~~~--~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  151 (459)
T PRK11522         78 DTQGQEFIDCLGGFGIFNVGH-RNPVVVSAVQNQLAKQPLH---SQE--LLDPLRAMLAKTLAALTPGKLKYSFFCNSGT  151 (459)
T ss_pred             ECCCCEEEECCcCHHhhhcCC-CCHHHHHHHHHHHhhCccc---ccc--cCCHHHHHHHHHHHHhCCCCCCEEEEeCCch
Confidence            3679999999777   33553 3999999999999876443   232  246788899999999874  35688899999


Q ss_pred             HHHHHHHHHhcc------c---------CCCCeeE------------------EEEEEecCCCHHHHHHHHHHh
Q psy16850        123 VANDSTLFTLGK------M---------IPYFTEL------------------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       123 ~aN~~~i~aL~~------~---------~~g~~~s------------------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      .||-+.+..--.      +         ..|....                  ..+..++.||.++|++.|++.
T Consensus       152 EAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  225 (459)
T PRK11522        152 ESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSEC  225 (459)
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHh
Confidence            999998873221      0         1111100                  124567889999999999764

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=95.09  E-value=0.13  Score=45.63  Aligned_cols=65  Identities=12%  Similarity=0.030  Sum_probs=49.5

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+...+||+.||++.|.+.++++++|..|...++.++.+  +|++..                     +.+....-.|++
T Consensus        50 ~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~--~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~  127 (382)
T TIGR02080        50 NPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLG--PDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQ  127 (382)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC--CCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHH
Confidence            357899999999999999999999999999999999876  444432                     123333445777


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +|++.++.
T Consensus       128 ~l~~ai~~  135 (382)
T TIGR02080       128 ALRAALAQ  135 (382)
T ss_pred             HHHHhcCc
Confidence            77777754

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK06062 hypothetical protein; Provisional

Probab=95.08  E-value=0.13  Score=46.73  Aligned_cols=78  Identities=17%  Similarity=0.142  Sum_probs=60.1

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.+.   .-||-+ ||+|.+|+.+.+++.....  +..   .++...+|-++|++...  .+.+.+.+||-
T Consensus        49 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~--~~~---~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  122 (451)
T PRK06062         49 DYEGRRYLDFSSQLVNTNIGHQ-HPKVVAAIQEQAARLCTVA--PAH---ANDARSEAARLIAERAPGDLSKVFFTNGGA  122 (451)
T ss_pred             ECCCCEEEEcccCHHhhcCCCC-CHHHHHHHHHHHHhcCCcC--Ccc---CCHHHHHHHHHHHHhCCCCCCEEEEcCChH
Confidence            4689999999775   335544 8999999999998754221  111   36778999999999874  46889999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.|..
T Consensus       123 EAve~Alkl  131 (451)
T PRK06062        123 DANEHAVRM  131 (451)
T ss_pred             HHHHHHHHH
Confidence            999999875

>cd00609 AAT_like Aspartate aminotransferase family

Probab=95.07  E-value=0.13  Score=42.87  Aligned_cols=73  Identities=16%  Similarity=0.039  Sum_probs=51.9

Q ss_pred             EEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC--------cEEEecchhHHHH
Q psy16850         55 TVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE--------AGLVFTSCYVAND  126 (174)
Q Consensus        55 inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--------~al~f~sGy~aN~  126 (174)
                      +||++++| .+..+|.++.+..+  ..++.+..+    .+...-+.++|+.+|++++.+        ..++.++|..++.
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~   73 (350)
T cd00609           1 IDLSIGEP-DFPPPPEVLEALAA--AALRAGLLG----YYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALS   73 (350)
T ss_pred             CCCCCCCC-CCCCCHHHHHHHHH--HhhccCCCC----CCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence            47788887 77778888777765  334433322    234455677777788877644        6888899999999


Q ss_pred             HHHHHhcc
Q psy16850        127 STLFTLGK  134 (174)
Q Consensus       127 ~~i~aL~~  134 (174)
                      .++.++.+
T Consensus        74 ~~~~~~~~   81 (350)
T cd00609          74 LLLRALLN   81 (350)
T ss_pred             HHHHHhCC
Confidence            99999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK08064 cystathionine beta-lyase; Provisional

Probab=95.05  E-value=0.12  Score=45.70  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=31.9

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFT  131 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~a  131 (174)
                      .+..++||+.||+++|.+.+++|+||..|...++..
T Consensus        53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~~   88 (390)
T PRK08064         53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFLL   88 (390)
T ss_pred             ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHHH
Confidence            377899999999999999999999999988777753

>PRK05764 aspartate aminotransferase; Provisional

Probab=95.05  E-value=0.37  Score=41.86  Aligned_cols=102  Identities=17%  Similarity=0.050  Sum_probs=65.5

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----C----CcEEEecchh
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----K----EAGLVFTSCY  122 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~----e~al~f~sGy  122 (174)
                      +..+++|++++ ..+...|++.+++.++++....+       ++...-..+|++.||++++    .    +..++++++.
T Consensus        30 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~  101 (393)
T PRK05764         30 GRDVISLGAGE-PDFDTPEHIKEAAIEALDDGKTK-------YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAK  101 (393)
T ss_pred             cCCEEEeCCCC-CCCCCCHHHHHHHHHHHhcCCCC-------cCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcH
Confidence            45688999876 56777888888888887642211       2222336788888888873    2    3356666667


Q ss_pred             HHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC-------CHHHHHHHHHH
Q psy16850        123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN-------TTDIIKEASKE  162 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~  162 (174)
                      .+...++.++++  +|....                 +++..++++       |+++|++.++.
T Consensus       102 ~a~~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  163 (393)
T PRK05764        102 QALYNAFMALLD--PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP  163 (393)
T ss_pred             HHHHHHHHHhcC--CCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc
Confidence            788778888765  332221                 355566654       46788887753

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=94.97  E-value=0.19  Score=43.14  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=44.6

Q ss_pred             ccCCCC-CccchHHHHHHHHHcCCCc--cccccccCCchHHHHHHHHHHHHhCCC---cEEEecchhHHHHHHHHHhc
Q psy16850         62 YLGMSC-HPKVKSAVREALEKFGTGA--GGTRNISGNSLFHEKLEEDVARLHQKE---AGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        62 YLGL~~-~p~v~~a~~~al~~~G~gs--~~Sr~~~G~~~~~~~LE~~lA~~~g~e---~al~f~sGy~aN~~~i~aL~  133 (174)
                      |=|.+. -|.+++++++.+..+...+  +..+.-......+.++++.+|+++|.+   ..++.++|..++..++.+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~   82 (373)
T cd06453           5 NAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG   82 (373)
T ss_pred             CccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh
Confidence            334444 4667788877776654322  122222334677889999999999977   45556666667555555553

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK08361 aspartate aminotransferase; Provisional

Probab=94.97  E-value=0.28  Score=42.86  Aligned_cols=102  Identities=16%  Similarity=0.040  Sum_probs=64.7

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCcEEEecchhH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEAGLVFTSCYV  123 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~al~f~sGy~  123 (174)
                      ..+|+|+.|+ ..+...+.+++++.++++..-.+       ++...-..+|++.+|+++    |    .+..+++++|..
T Consensus        33 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~  104 (391)
T PRK08361         33 ENVISLGIGE-PDFDTPKNIKEAAKRALDEGWTH-------YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYE  104 (391)
T ss_pred             cCeEEcCCCC-CCCCCCHHHHHHHHHHHhcCCCC-------CCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHH
Confidence            3578998775 44555677888888776531111       222233578888999987    3    245677777788


Q ss_pred             HHHHHHHHhcccCCCCeeE-----------------EEEEEecC-------CCHHHHHHHHHHh
Q psy16850        124 ANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA-------NTTDIIKEASKEL  163 (174)
Q Consensus       124 aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H-------Nd~~~Le~~L~~~  163 (174)
                      ++..++.++++  +|.++.                 +.++.+++       .|+++|++.+...
T Consensus       105 al~~~~~~l~~--~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~  166 (391)
T PRK08361        105 ATYLAFESLLE--EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKR  166 (391)
T ss_pred             HHHHHHHHhcC--CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccc
Confidence            88888888865  343322                 24555554       4678888877643

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=94.95  E-value=0.17  Score=45.25  Aligned_cols=80  Identities=19%  Similarity=0.161  Sum_probs=59.4

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG  121 (174)
                      ..+|+++|+|.+.   .-||-+ ||+|.+|+.+.+++.....  ...  -.++...+|-++|++...   .+.+.+++||
T Consensus        36 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~--~~~--~~~~~~~~la~~l~~~~p~~~~~~~~f~~sG  110 (421)
T PRK09792         36 DVEGNEYIDFAAGIAVLNTGHR-HPDLVAAVEQQLQQFTHTA--YQI--VPYESYVTLAEKINALAPVSGQAKTAFFTTG  110 (421)
T ss_pred             eCCCCEEEEccCchhhhcCCCC-CHHHHHHHHHHHHhccCcc--cCc--cCCHHHHHHHHHHHHhCCCCCCceEEEeCCh
Confidence            4689999999654   336654 9999999999998854221  111  235677888888999764   3678999999


Q ss_pred             hHHHHHHHHHh
Q psy16850        122 YVANDSTLFTL  132 (174)
Q Consensus       122 y~aN~~~i~aL  132 (174)
                      -.||-+.|..-
T Consensus       111 seA~e~AlklA  121 (421)
T PRK09792        111 AEAVENAVKIA  121 (421)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=94.86  E-value=0.16  Score=46.19  Aligned_cols=110  Identities=15%  Similarity=0.076  Sum_probs=75.8

Q ss_pred             ecCCeeEEEeccC--c-ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN--D-YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn--d-YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy  122 (174)
                      ..+|+++|+|.++  . -||- .||+|.+|+.+.+++....   ++..  .++...+|-++|++.+..  +.+.+.+||-
T Consensus        71 D~dG~~ylD~~~g~~~~~lGh-~hp~v~~Av~~ql~~l~~~---~~~~--~~~~~~~lAe~L~~~~p~~~~~v~f~~SGs  144 (442)
T TIGR03372        71 DTQGNEFIDCLGGFGIFNVGH-RNPNVIAAVENQLAKQPLH---SQEL--LDPLRALLAKTLAALTPGKLKYSFFCNSGT  144 (442)
T ss_pred             ECCCCEEEECCccHHhhhcCC-CCHHHHHHHHHHHHhCCCc---cccc--CCHHHHHHHHHHHHhCCCCcCEEEEeCCch
Confidence            3679999999776  2 2453 3999999999999876533   2322  367788899999988753  4577889999


Q ss_pred             HHHHHHHHHhc------cc---------CCCCee------------------EEEEEEecCCCHHHHHHHHHHh
Q psy16850        123 VANDSTLFTLG------KM---------IPYFTE------------------LIYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       123 ~aN~~~i~aL~------~~---------~~g~~~------------------s~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      .||-+.+..--      ++         ..|...                  ...+..++.||.+.|++.|++.
T Consensus       145 EA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~  218 (442)
T TIGR03372       145 ESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNEC  218 (442)
T ss_pred             HHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHH
Confidence            99998887321      10         111110                  0124567789999999988764

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=94.85  E-value=0.16  Score=45.70  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.+.   .-||-+ ||+|.+|+.+.+++......+    .-.++...+|-++|++..+  .+.+.+.+||-
T Consensus        36 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  110 (422)
T PRK05630         36 LEDGSTVIDAMSSWWSAAHGHG-HPRLKAAAHKQIDTMSHVMFG----GLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGS  110 (422)
T ss_pred             ECCCCEEEEcchhHHHhcCCCC-CHHHHHHHHHHHHhCCCcccC----CcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcH
Confidence            4679999999774   334544 999999999999886532111    1135677889999999874  56899999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.|..
T Consensus       111 eA~e~Alkl  119 (422)
T PRK05630        111 VSVEVAIKM  119 (422)
T ss_pred             HHHHHHHHH
Confidence            999998874

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=94.84  E-value=0.15  Score=45.43  Aligned_cols=80  Identities=16%  Similarity=0.074  Sum_probs=56.0

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--C--CC-cEEEe-
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--Q--KE-AGLVF-  118 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g--~e-~al~f-  118 (174)
                      ..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++.+.-.+.    ...++...+|-++|++..  +  .. .+.+| 
T Consensus        31 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~----~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~  105 (412)
T TIGR02407        31 DEDGKEYIDFFAGAGALNYGHN-NPKLKQALIDYLADDGIIHSL----DMATEAKREFLETFNEIILKPRGLDYKVQFPG  105 (412)
T ss_pred             eCCCCEEEEcccchhhccCCCC-CHHHHHHHHHHHhhccceecc----ccCcHHHHHHHHHHHHhccCccCCCceEEEeC
Confidence            4689999999766   224444 999999999999876643221    113567778888888864  1  22 34454 


Q ss_pred             cchhHHHHHHHHHh
Q psy16850        119 TSCYVANDSTLFTL  132 (174)
Q Consensus       119 ~sGy~aN~~~i~aL  132 (174)
                      +||-.||-+.|..-
T Consensus       106 ~sGseA~e~AlklA  119 (412)
T TIGR02407       106 PTGTNAVESALKLA  119 (412)
T ss_pred             CCchHHHHHHHHHH
Confidence            79999999988753

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK05965 hypothetical protein; Provisional

Probab=94.83  E-value=0.14  Score=46.48  Aligned_cols=80  Identities=13%  Similarity=-0.007  Sum_probs=57.9

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.-   =||-+ ||+|.+|+.+.+++....+   ....-.++...+|-++|++.+.  .+.+.+.+||-
T Consensus        42 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~---~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGS  117 (459)
T PRK05965         42 DASGHQLLDAFAGLWCVNVGYG-QESIVEAAAEQMRELPYAT---GYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGS  117 (459)
T ss_pred             ECCCCEEEECcccHHhccCCCC-CHHHHHHHHHHHHhcCCcc---cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChh
Confidence            36899999997652   23433 9999999999998754322   1111135677889999999873  45677778999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.|..
T Consensus       118 EAve~AlKl  126 (459)
T PRK05965        118 DAVDSAVRF  126 (459)
T ss_pred             HHHHHHHHH
Confidence            999998874

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=94.83  E-value=0.11  Score=47.09  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~  133 (174)
                      ....+||++||+++|.+.+++++||..|+..++.+++
T Consensus        63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~   99 (438)
T PRK15407         63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALT   99 (438)
T ss_pred             hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHh
Confidence            4588999999999999999999999999999998874

>PRK05967 cystathionine beta-lyase; Provisional

Probab=94.78  E-value=0.2  Score=44.90  Aligned_cols=46  Identities=13%  Similarity=0.105  Sum_probs=39.5

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL  142 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s  142 (174)
                      ..+..+.||+.||..-+.+.+++|+||..|...++.+|.+  +|+++.
T Consensus        62 gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~--~GD~Vl  107 (395)
T PRK05967         62 GTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLS--PGDHAL  107 (395)
T ss_pred             CChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcC--CCCEEE
Confidence            3578899999999999999999999999999999988876  555443

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=94.73  E-value=0.18  Score=45.66  Aligned_cols=79  Identities=20%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy  122 (174)
                      ..+|+++|+|.+.   .-||-+ ||+|.+|+.+.+++....+.    ....++...+|-++|++..+.  +.+.+.+||-
T Consensus        37 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~----~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGs  111 (443)
T PRK08360         37 DIEGNEYIDFLSDAAVQNVGHN-NPRVVKAIKEQTDKLIHYTP----IYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGS  111 (443)
T ss_pred             ECCCCEEEEccccHhhcccCCC-CHHHHHHHHHHHHhccCccc----cccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHH
Confidence            3689999999765   234444 99999999999987543221    122456778999999998854  5788889999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.|..
T Consensus       112 EAve~Alkl  120 (443)
T PRK08360        112 DANDGAIKF  120 (443)
T ss_pred             HHHHHHHHH
Confidence            999998874

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=94.64  E-value=0.12  Score=45.01  Aligned_cols=83  Identities=17%  Similarity=0.131  Sum_probs=62.4

Q ss_pred             eecCCeeEEEeccCc-ccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850         47 YTDSEKEVTVYCSND-YLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY  122 (174)
Q Consensus        47 ~~~~g~~~inf~Snd-YLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy  122 (174)
                      +..+|+++++|+|.- =..|.+ ||+|.+++.+.+++....+. +   ...++...+|-++|++.+  +.+.+.+.+||-
T Consensus        11 ~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~-~---~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGs   86 (339)
T PF00202_consen   11 WDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSF-S---GFTHPEAAELAEKLAELFPGGLDRVFFANSGS   86 (339)
T ss_dssp             EETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCST-T---TSEEHHHHHHHHHHHHHSSTTEEEEEEESSHH
T ss_pred             EECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccc-c---ceeccchhhhhhhhhhccccccceeeeccCch
Confidence            357899999997542 233443 89999999999887654321 1   124578899999999999  778889999999


Q ss_pred             HHHHHHHHHhc
Q psy16850        123 VANDSTLFTLG  133 (174)
Q Consensus       123 ~aN~~~i~aL~  133 (174)
                      .||-..|....
T Consensus        87 eAve~Alkla~   97 (339)
T PF00202_consen   87 EAVEAALKLAR   97 (339)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988665

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK08297 L-lysine aminotransferase; Provisional

Probab=94.58  E-value=0.31  Score=44.08  Aligned_cols=108  Identities=13%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             HHHHHHHHhCCCCceeeecccccCCCCceeeec--CCeeEEEeccCc---ccCCCCCccchH--HHHHHHHHcCCCcccc
Q psy16850         17 EQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD--SEKEVTVYCSND---YLGMSCHPKVKS--AVREALEKFGTGAGGT   89 (174)
Q Consensus        17 ~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~--~g~~~inf~Snd---YLGL~~~p~v~~--a~~~al~~~G~gs~~S   89 (174)
                      ..|....-..-|+.+..+.+..+     .+++.  +|+++|+|.|.=   -||-+ ||+|.+  ++.+.+++...-.+++
T Consensus        13 ~~~~~~~~~~~~p~~~~i~~a~G-----~~l~D~~dG~~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~ql~~l~~~~~~~   86 (443)
T PRK08297         13 EVLARHILVDGFDLVLDLERSQG-----SYLVDARTGRRYLDMFTFFASSALGMN-HPALADDPEFRAELGRAALNKPSN   86 (443)
T ss_pred             HHHHHHHhhcCCCcceEEEeccC-----CEEEECCCCCEeeecccCHhhhcCCCC-ChHHhhHHHHHHHHHHhhhhcccc
Confidence            34444444455665554555432     23333  799999997652   24443 999999  9998887754211111


Q ss_pred             ccccCCchHHHHHHHHHHHHh---CCCcEEEecchhHHHHHHHHHh
Q psy16850         90 RNISGNSLFHEKLEEDVARLH---QKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        90 r~~~G~~~~~~~LE~~lA~~~---g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      .  .-.++...+|-++|+++.   +.+.+.+.+||-.||-..|..-
T Consensus        87 ~--~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlA  130 (443)
T PRK08297         87 S--DVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVA  130 (443)
T ss_pred             C--CcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHH
Confidence            1  113467778888888886   3468999999999999998865

>PRK06917 hypothetical protein; Provisional

Probab=94.51  E-value=0.23  Score=45.00  Aligned_cols=80  Identities=16%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy  122 (174)
                      ..+|+++|+|.+.-   =||-+ ||+|.+|+.+.+++...... +..   .++...+|-++|++.+..  +.+.+.+||-
T Consensus        27 D~dG~~ylD~~~g~~~~~lGh~-hp~v~~Ai~~ql~~~~~~~~-~~~---~~~~~~~lae~L~~~~p~~~~~v~f~~sGs  101 (447)
T PRK06917         27 DQNGNKYFDGSSGAVTAGIGHG-VKEIADAIKEQAEEVSFVYR-SQF---TSEPAEKLAKKLSDLSPGDLNWSFFVNSGS  101 (447)
T ss_pred             eCCCCEEEECchhHHhccCCCC-CHHHHHHHHHHHhhCcCccc-ccc---CCHHHHHHHHHHHHhCCCCCCEEEEeCChH
Confidence            36899999998662   23433 99999999999988543221 122   257788899999998853  4677779999


Q ss_pred             HHHHHHHHHh
Q psy16850        123 VANDSTLFTL  132 (174)
Q Consensus       123 ~aN~~~i~aL  132 (174)
                      .||-..|..-
T Consensus       102 EAve~AlklA  111 (447)
T PRK06917        102 EANETAMKIA  111 (447)
T ss_pred             HHHHHHHHHH
Confidence            9999998854

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=94.45  E-value=0.24  Score=42.90  Aligned_cols=78  Identities=14%  Similarity=0.059  Sum_probs=46.4

Q ss_pred             eEEEeccCcccCCCCCccchHH-HHHHHHHcCCCcc--ccccccCCchHHHHHHHHHHHHhCCC--cEEEecchh-HHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSA-VREALEKFGTGAG--GTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCY-VAND  126 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a-~~~al~~~G~gs~--~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy-~aN~  126 (174)
                      .+++++.++ +|+. +|+++++ +.++ .. -.+.+  ......|...+.+++++.+++++|.+  .++++++|- .++.
T Consensus        21 ~~~~l~~g~-~~~~-~p~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~   96 (398)
T cd00613          21 SMSFLGSGT-YKHN-PPAVIKRNILEN-EF-YTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEA   96 (398)
T ss_pred             Ccccccccc-cCCc-CcHHHHHHhccc-cC-cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHH
Confidence            345565554 4655 4555444 4443 11 01111  11114677889999999999999987  566666444 5677


Q ss_pred             HHHHHhcc
Q psy16850        127 STLFTLGK  134 (174)
Q Consensus       127 ~~i~aL~~  134 (174)
                      .++.++..
T Consensus        97 ~~~~~~~~  104 (398)
T cd00613          97 AGLAAIRA  104 (398)
T ss_pred             HHHHHHhc
Confidence            77776654

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=94.42  E-value=0.23  Score=44.77  Aligned_cols=79  Identities=15%  Similarity=0.053  Sum_probs=56.0

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC----CcEEEe-c
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK----EAGLVF-T  119 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~----e~al~f-~  119 (174)
                      ..+|+++|+|.|.-   -||-+ ||+|.+|+.+.+++....++  .  .-.++...+|-++|++.+..    ...++| +
T Consensus        35 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~--~--~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~  109 (442)
T TIGR00709        35 DVEGKEYLDFLAGAGTLALGHN-HPNMKQKILDYLQSGLPLHT--L--DLTTPLKDAFIEALLNIIPKRKMDYKLQFPGP  109 (442)
T ss_pred             eCCCCEEEEccccHhhhcCCCC-CHHHHHHHHHHHHhccCccc--c--ccCcHHHHHHHHHHHHhCCCcCCCccEEEeCC
Confidence            46899999997763   23333 99999999999876321111  1  11357788899999998753    244555 8


Q ss_pred             chhHHHHHHHHH
Q psy16850        120 SCYVANDSTLFT  131 (174)
Q Consensus       120 sGy~aN~~~i~a  131 (174)
                      ||-.||-+.|..
T Consensus       110 sGsEA~e~Alkl  121 (442)
T TIGR00709       110 SGADAVEAAIKL  121 (442)
T ss_pred             CHHHHHHHHHHH
Confidence            999999998874

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=94.31  E-value=0.18  Score=46.25  Aligned_cols=38  Identities=21%  Similarity=-0.148  Sum_probs=31.5

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHH-HHHHHHHhcc
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVA-NDSTLFTLGK  134 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~a-N~~~i~aL~~  134 (174)
                      .+-+.+||+.+|+++|.+.++.++||-+| |+ +.+++++
T Consensus        70 ~~s~~~lE~~va~~~G~~~av~v~sGT~Al~l-l~~l~l~  108 (450)
T TIGR02618        70 SRNFYHLERTVRELYGFKYVVPTHQGRGAENL-LSQIAIK  108 (450)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHH-HHHhCCC
Confidence            34477999999999999999999999999 76 4555544

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK06108 aspartate aminotransferase; Provisional

Probab=94.30  E-value=0.83  Score=39.33  Aligned_cols=78  Identities=22%  Similarity=0.045  Sum_probs=48.4

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecchhHHHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSCYVANDST  128 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sGy~aN~~~  128 (174)
                      .+|+|+.|+ -.+...|.+++++.+++..-..+.   ....|...+.+.+.+.+++++|    .+..++.++|..+...+
T Consensus        25 ~~i~l~~g~-~~~~~~~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~  100 (382)
T PRK06108         25 GVLPLWFGE-SDLPTPDFIRDAAAAALADGETFY---THNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLA  100 (382)
T ss_pred             CeEEecCCC-CCCCCCHHHHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHH
Confidence            468888764 345567888999888775411111   1123445555555555555556    35567777778888888


Q ss_pred             HHHhcc
Q psy16850        129 LFTLGK  134 (174)
Q Consensus       129 i~aL~~  134 (174)
                      +.++.+
T Consensus       101 ~~~l~~  106 (382)
T PRK06108        101 AQALVG  106 (382)
T ss_pred             HHHhcC
Confidence            888865

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=94.30  E-value=0.21  Score=45.64  Aligned_cols=80  Identities=9%  Similarity=0.003  Sum_probs=60.3

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEE
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLV  117 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~  117 (174)
                      ..+|+++|+|.|.-   -||-+ ||+|.+|+.+.++++..++.. ..   .++...+|-++|++.+.       .+.+.+
T Consensus        60 D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~l~~~~~~-~~---~~~~~~~lae~L~~~~p~~~~~~~~~~v~f  134 (472)
T PRK08742         60 GHDGRRYLDAVSSWWTNLFGHA-EPRIGAAIAAQAGELEQVMLA-GF---THEPAVQLAEQLLAIAPRQDGRAPLSKVFY  134 (472)
T ss_pred             eCCCCEEEEcCccHHhccCCCC-CHHHHHHHHHHHHhCCCcccc-cc---CCHHHHHHHHHHHHhCCCcccCCCCCEEEE
Confidence            36899999997762   24544 999999999999876544321 11   25678899999999874       357888


Q ss_pred             ecchhHHHHHHHHHh
Q psy16850        118 FTSCYVANDSTLFTL  132 (174)
Q Consensus       118 f~sGy~aN~~~i~aL  132 (174)
                      .+||-.||-+.|..-
T Consensus       135 ~~sGSEAvE~AlKlA  149 (472)
T PRK08742        135 ADNGSAGVEVALKMA  149 (472)
T ss_pred             eCCchHHHHHHHHHH
Confidence            999999999998854

>PRK07036 hypothetical protein; Provisional

Probab=94.28  E-value=0.24  Score=45.16  Aligned_cols=80  Identities=13%  Similarity=0.015  Sum_probs=59.1

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.   .=||-+ ||+|.+|+.+.+++....+.   ...-.++...+|-++|++...  .+.+.+.+||-
T Consensus        47 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~---~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGs  122 (466)
T PRK07036         47 DADGRRYLDGIGGMWCVNVGYG-REEMADAIADQARRLPYYTP---FGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGS  122 (466)
T ss_pred             ECCCCEEEECcccHHhhcCCCC-CHHHHHHHHHHHHhCccccc---ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCch
Confidence            3689999999765   235544 99999999999988543322   111235778888899988874  45778889999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-..|..
T Consensus       123 eAve~Alkl  131 (466)
T PRK07036        123 TAVDSALRF  131 (466)
T ss_pred             HHHHHHHHH
Confidence            999998885

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=94.28  E-value=0.44  Score=41.33  Aligned_cols=66  Identities=21%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             CCccchHHHHHHHHHcCCCcccccccc-CCchHHHHHHHHHHHHhCCCc-EEEecchhH-HHHHHHHHh
Q psy16850         67 CHPKVKSAVREALEKFGTGAGGTRNIS-GNSLFHEKLEEDVARLHQKEA-GLVFTSCYV-ANDSTLFTL  132 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~-G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~-aN~~~i~aL  132 (174)
                      ..+.+++++.+.+..++.+++++.... +....++++++.||+++|.+. .++|++|-. +...++.++
T Consensus        29 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~   97 (397)
T TIGR01976        29 IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAI   97 (397)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHH
Confidence            367889999999988765554444322 345678999999999999753 466655544 333344444

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=94.25  E-value=0.9  Score=38.98  Aligned_cols=108  Identities=10%  Similarity=0.020  Sum_probs=67.2

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHH-
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDS-  127 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~-  127 (174)
                      +..+|+|+.|.= .+...|++++++.++++.......      +. .-..+|.+.||+|+|.+.  -+++++|-..-+. 
T Consensus        25 ~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y------~~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~   96 (356)
T PRK04870         25 ATGMVKLDAMEN-PYRLPAELRAELGERLAEVALNRY------PD-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQL   96 (356)
T ss_pred             CCCceeCcCCCC-CCCCCHHHHHHHHHHhhccccccC------CC-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHH
Confidence            346888877743 677788999999988764222111      11 124789999999999653  5888888765544 


Q ss_pred             HHHHhcccCCCCeeE-----------------EEEEEec-----CCCHHHHHHHHHHhccccc
Q psy16850        128 TLFTLGKMIPYFTEL-----------------IYFYRFL-----ANTTDIIKEASKELQEDMI  168 (174)
Q Consensus       128 ~i~aL~~~~~g~~~s-----------------~~~~~f~-----HNd~~~Le~~L~~~~~~~~  168 (174)
                      ++.+++.  +|..+.                 +.++.++     .-|++.|++.++......|
T Consensus        97 ~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v  157 (356)
T PRK04870         97 LALACAK--PGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALV  157 (356)
T ss_pred             HHHHhcC--CCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEE
Confidence            4445544  343322                 2334433     3578889888875444444

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=94.15  E-value=0.36  Score=43.62  Aligned_cols=104  Identities=23%  Similarity=0.302  Sum_probs=75.1

Q ss_pred             ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHHH----HHHHhCCCcE-EEecchhHHHHHHHHH
Q psy16850         58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEED----VARLHQKEAG-LVFTSCYVANDSTLFT  131 (174)
Q Consensus        58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~~----lA~~~g~e~a-l~f~sGy~aN~~~i~a  131 (174)
                      +|-||-    +|.|.+|.-..+ .+|.-|.-|-|...| +...+++|..    ..++||.+-| +==.||-.||++++.|
T Consensus        33 ASEN~~----S~aV~~A~gS~ltnKYAEGyPgkRyYgG-ce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~A  107 (413)
T COG0112          33 ASENFT----SPAVMEAQGSDLTNKYAEGYPGKRYYGG-CEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLA  107 (413)
T ss_pred             eccccC----CHHHHHHHhhhhhhccccCCCCccccCC-CeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHH
Confidence            566664    566888876654 679999999998766 4566666653    4578898877 4456999999999999


Q ss_pred             hcccCCCCe-----------eE-----------EEEEEecCC------CHHHHHHHHHHhccccc
Q psy16850        132 LGKMIPYFT-----------EL-----------IYFYRFLAN------TTDIIKEASKELQEDMI  168 (174)
Q Consensus       132 L~~~~~g~~-----------~s-----------~~~~~f~HN------d~~~Le~~L~~~~~~~~  168 (174)
                      |.+  ||+.           ++           -.++.|.=+      |+|.++++.++.+|..|
T Consensus       108 ll~--pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~i  170 (413)
T COG0112         108 LLQ--PGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLI  170 (413)
T ss_pred             HcC--CCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEE
Confidence            987  3432           22           133444434      89999999999998766

>KOG1402|consensus

Probab=94.14  E-value=0.2  Score=44.59  Aligned_cols=109  Identities=20%  Similarity=0.156  Sum_probs=81.6

Q ss_pred             ecCCeeEEEeccCcccCCC--C-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSNDYLGMS--C-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~SndYLGL~--~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      -.+|+++++|-|- |=-.+  + ||.|+++.++..++.-..   ||.++  .++.-+.|+.++++||.+..+-.++|-.|
T Consensus        55 D~eGk~ylDflsa-ysaVnqGhchpki~~aLqeq~~kLtls---srafY--nd~~~~f~~~vt~lf~~~kvlpmnTGaEa  128 (427)
T KOG1402|consen   55 DPEGKEYLDFLSA-YSAVNQGHCHPKIIKALQEQADKLTLS---SRAFY--NDVLGEFAEYVTKLFGYDKVLPMNTGAEA  128 (427)
T ss_pred             CCCccchhhhhhh-hhhcccCCCCHHHHHHHHHHHhHhhhh---hHHHh--hhhHHHHHHHHHHhcCcceeeecccchhH
Confidence            4578999987653 43333  2 999999999988875543   46654  57899999999999999999999999999


Q ss_pred             HHHHHHHhcc------cCC--------------CCeeE-------------------EEEEEecCCCHHHHHHHHHH
Q psy16850        125 NDSTLFTLGK------MIP--------------YFTEL-------------------IYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       125 N~~~i~aL~~------~~~--------------g~~~s-------------------~~~~~f~HNd~~~Le~~L~~  162 (174)
                      +=+++...-.      .+|              |-.++                   ..+...+-||.++||..|+.
T Consensus       129 ~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~  205 (427)
T KOG1402|consen  129 VETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKS  205 (427)
T ss_pred             HHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcC
Confidence            9998876542      122              11111                   12567788999999999987

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=94.12  E-value=0.23  Score=45.06  Aligned_cols=80  Identities=14%  Similarity=0.127  Sum_probs=60.3

Q ss_pred             ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchh
Q psy16850         48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.-.   ||-+ ||+|.+|+.+.+++.+..... .   -.++...+|-++|++..+.  +.+.+.+||-
T Consensus        50 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~-~---~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGs  124 (453)
T PRK06943         50 DRDGRRYLDAISSWWVNLFGHA-NPRINAALKDQLDTLEHAMLA-G---CTHEPAIELAERLAALTGGTLGHAFFASDGA  124 (453)
T ss_pred             eCCCCEEEEcchHHHHhcCCCC-CHHHHHHHHHHHHhcCCcccc-c---cCCHHHHHHHHHHHHhCCCCCCEEEEeCCCH
Confidence            368999999977632   4433 899999999999886543221 1   1356788899999998863  4788889999


Q ss_pred             HHHHHHHHHh
Q psy16850        123 VANDSTLFTL  132 (174)
Q Consensus       123 ~aN~~~i~aL  132 (174)
                      .||-+.|..-
T Consensus       125 eAve~AlKlA  134 (453)
T PRK06943        125 SAVEIALKMS  134 (453)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=94.09  E-value=0.32  Score=43.40  Aligned_cols=79  Identities=20%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG  121 (174)
                      ..+|+++|+|.+.   .-||-+ ||+|.+|+.+.+++......    .....+...+|-++|++...   .+.+.+++||
T Consensus        29 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~~~~~~~~----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sG  103 (420)
T TIGR00700        29 DVDGNRLIDFASGIAVLNIGHS-HPRVVDAVRTQVAEFTHTCF----MVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSG  103 (420)
T ss_pred             eCCCCEEEECccCHHhccCCCC-CHHHHHHHHHHHHhccCccc----cccCChHHHHHHHHHHHhCCCCCCCEEEEeCCc
Confidence            3689999999776   234444 89999999999988542211    11134567788888888874   3678999999


Q ss_pred             hHHHHHHHHH
Q psy16850        122 YVANDSTLFT  131 (174)
Q Consensus       122 y~aN~~~i~a  131 (174)
                      -.||-+.|..
T Consensus       104 seA~e~Alkl  113 (420)
T TIGR00700       104 AEAVENAVKI  113 (420)
T ss_pred             HHHHHHHHHH
Confidence            9999988873

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR01814 kynureninase kynureninase

Probab=94.08  E-value=0.066  Score=47.17  Aligned_cols=78  Identities=22%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccc--cCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNI--SGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDST  128 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~--~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~  128 (174)
                      +.+++|.+|. +|+. .+.+.+++.+.++.|+.++++++..  .+...+++++|+ + +++|.+ +.++|++|...++.+
T Consensus        26 ~~~iyld~~a-~g~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~  101 (406)
T TIGR01814        26 NAVIYLDGNS-LGLM-PKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHL  101 (406)
T ss_pred             CCcEEecCCC-cCcC-cHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHH
Confidence            4578888888 8876 8888999999999998776656543  344567788877 4 899865 358888887776655


Q ss_pred             -HHHhc
Q psy16850        129 -LFTLG  133 (174)
Q Consensus       129 -i~aL~  133 (174)
                       +.++.
T Consensus       102 ~~~~~~  107 (406)
T TIGR01814       102 LLASFY  107 (406)
T ss_pred             HHHHhc
Confidence             55553

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=93.97  E-value=0.31  Score=43.61  Aligned_cols=78  Identities=21%  Similarity=0.170  Sum_probs=57.4

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-CCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-KEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-~e~al~f~sGy~  123 (174)
                      ..+|+++|+|.|.-   -||-+ ||+|.+|+.+.+++.... +  ...  .+....+|-++|++... .+.+.+.+||-.
T Consensus        36 D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~-~--~~~--~~~~~~~la~~L~~~~~~~~~v~f~~sGse  109 (408)
T PRK04612         36 DDQGREYLDLAAGIAVCGLGHN-DPDLVAALTEQAGKLWHT-S--NVF--YSAPPLKLAEELVTASRFAEKVFLCNSGTE  109 (408)
T ss_pred             ECCCCEEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccc-c--ccc--CCHHHHHHHHHHHhhCCCCCEEEEcCchHH
Confidence            46899999997652   24443 999999999998874321 1  121  24667788888888774 467899999999


Q ss_pred             HHHHHHHH
Q psy16850        124 ANDSTLFT  131 (174)
Q Consensus       124 aN~~~i~a  131 (174)
                      ||-..|..
T Consensus       110 A~e~Alkl  117 (408)
T PRK04612        110 ANEAAIKL  117 (408)
T ss_pred             HHHHHHHH
Confidence            99988863

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=93.92  E-value=0.39  Score=42.81  Aligned_cols=81  Identities=19%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG  121 (174)
                      ..+|+++|+|.+.   .=||-+ ||+|.+++.+++++++...  +.. .+ ++...+|-+.|++..+.   +..++.+||
T Consensus        37 d~dG~~~lD~~~g~~~~~lGh~-~~~i~~a~~~~~~~~~~~~--~~~-~~-~~~~~~la~~l~~~~~~~~~~~~~f~~sG  111 (425)
T PRK08088         37 DVEGREYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHTC--FQV-LA-YEPYLELCEKMNQKVPGDFAKKTLLVTTG  111 (425)
T ss_pred             eCCCCEEEEcCCchhhcCCCCC-CHHHHHHHHHHHhhCCCcc--ccc-cC-CHHHHHHHHHHHHhCCCCCCCEEEEeCCc
Confidence            4689999999773   226654 9999999999998866321  111 22 34556888888888764   578999999


Q ss_pred             hHHHHHHHHHhc
Q psy16850        122 YVANDSTLFTLG  133 (174)
Q Consensus       122 y~aN~~~i~aL~  133 (174)
                      -.||-..+....
T Consensus       112 sea~e~Alklar  123 (425)
T PRK08088        112 SEAVENAVKIAR  123 (425)
T ss_pred             HHHHHHHHHHHH
Confidence            999988877543

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=93.80  E-value=0.35  Score=43.99  Aligned_cols=80  Identities=13%  Similarity=0.096  Sum_probs=55.1

Q ss_pred             ecCCeeEEEeccCc-ccCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC----cEEEe-cc
Q psy16850         48 TDSEKEVTVYCSND-YLGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE----AGLVF-TS  120 (174)
Q Consensus        48 ~~~g~~~inf~Snd-YLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e----~al~f-~s  120 (174)
                      ..+|+++|+|.|.- -+.|. .||+|.+|+.+.+++ +....+. .  -..+...+|-++|++.+...    ..++| +|
T Consensus        54 D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~-~~~~~~~-~--~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~S  129 (459)
T PRK06931         54 DVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTS-GLPLHTL-D--LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPS  129 (459)
T ss_pred             eCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh-hcccccc-c--cCCHHHHHHHHHHHHhCCCccccceEEEeCCC
Confidence            46899999998772 12233 399999999998865 2111111 1  13577788999999988532    24455 79


Q ss_pred             hhHHHHHHHHH
Q psy16850        121 CYVANDSTLFT  131 (174)
Q Consensus       121 Gy~aN~~~i~a  131 (174)
                      |-.||-..|..
T Consensus       130 GsEAve~Alkl  140 (459)
T PRK06931        130 GADAVEAAIKL  140 (459)
T ss_pred             cHHHHHHHHHH
Confidence            99999999874

>PRK07582 cystathionine gamma-lyase; Validated

Probab=93.72  E-value=0.14  Score=44.94  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=34.3

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      .+.+.+||++||++. .+++++|+||..|+..++.++.+
T Consensus        50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~   87 (366)
T PRK07582         50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLR   87 (366)
T ss_pred             CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcC
Confidence            356899999999999 68999999999999999988865

>PRK03321 putative aminotransferase; Provisional

Probab=93.60  E-value=1  Score=38.55  Aligned_cols=72  Identities=14%  Similarity=0.032  Sum_probs=47.4

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchhHHH-HHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCYVAN-DSTLF  130 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~aN-~~~i~  130 (174)
                      .+|+|++| ...+...|.+++++.+++..+..        ++ ..-..+|++.+|+++|.+. .|++++|-... ..++.
T Consensus        23 ~~i~l~~~-~~~~~~~~~~~~a~~~~~~~~~~--------y~-~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~   92 (352)
T PRK03321         23 GAIKLSSN-ETPFGPLPSVRAAIARAAAGVNR--------YP-DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQ   92 (352)
T ss_pred             cceeccCC-CCCCCCCHHHHHHHHHHHHhcCc--------CC-CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHH
Confidence            47888887 34455567888888877653211        11 1237899999999998653 68888887664 34455


Q ss_pred             Hhcc
Q psy16850        131 TLGK  134 (174)
Q Consensus       131 aL~~  134 (174)
                      ++.+
T Consensus        93 ~~~~   96 (352)
T PRK03321         93 ATAG   96 (352)
T ss_pred             HhcC
Confidence            5554

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=93.57  E-value=0.56  Score=42.16  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhCCCCceeeecccccCCCCceeeec--CCeeEEEeccC---cccCCCCCccch--HHHHHHHHHcCCCccc
Q psy16850         16 HEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD--SEKEVTVYCSN---DYLGMSCHPKVK--SAVREALEKFGTGAGG   88 (174)
Q Consensus        16 ~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~--~g~~~inf~Sn---dYLGL~~~p~v~--~a~~~al~~~G~gs~~   88 (174)
                      .+.|.+..-.+-++.+..+.+..+     .++..  +|+++|+|.|.   .-||- .||+|.  +|+.+.+++......+
T Consensus         5 ~~~~~~~~~~~~~p~~~~~~~a~G-----~~l~D~~dG~~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~q~~~~~~~~~~   78 (431)
T TIGR03251         5 HEVLSRHMLTDGFDLVLDLDRSRG-----SVLVDARDGRRYLDMFSFFASMALGM-NHPALVDDLAFRARLGAAAVNKPS   78 (431)
T ss_pred             HHHHHHHhhccCCceeeEEEeccC-----CEEEECCCCCChhhcccChhhcCCCC-CChhhhHHHHHHHHHHHhhhcccc
Confidence            345566666666666554454432     33343  79999999664   23442 399999  8988888764311111


Q ss_pred             cccccCCchHHHHHHHHHHHHh---CCCcEEEecchhHHHHHHHHHh
Q psy16850         89 TRNISGNSLFHEKLEEDVARLH---QKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        89 Sr~~~G~~~~~~~LE~~lA~~~---g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      +...  ......+|-++|++..   +.+.+.+.+||-.||-+.|..-
T Consensus        79 ~~~~--~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklA  123 (431)
T TIGR03251        79 NSDV--YTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTA  123 (431)
T ss_pred             cCCC--CCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHH
Confidence            1111  2455566666677765   3467889999999999988754

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=93.52  E-value=0.46  Score=42.89  Aligned_cols=45  Identities=29%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL  142 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s  142 (174)
                      .+....||+.+|++-|.+.|+.|+||..|-..++-++.+  +|+++.
T Consensus        62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~--~GD~vl  106 (396)
T COG0626          62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLK--AGDHVL  106 (396)
T ss_pred             CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcC--CCCEEE
Confidence            578999999999999999999999999999998888876  566654

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=93.49  E-value=0.17  Score=44.51  Aligned_cols=43  Identities=19%  Similarity=0.020  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL  142 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s  142 (174)
                      +...+||+.||++.|.+.+++++||-.|...++. +.+  +|+++.
T Consensus        54 p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~-~l~--~GD~VI   96 (364)
T PRK07269         54 PTRAKLEETLAAIESADYALATSSGMSAIVLAFS-VFP--VGSKVV   96 (364)
T ss_pred             ccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHH-HhC--CCCEEE
Confidence            6689999999999999999999999999998885 444  566554

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=93.33  E-value=0.44  Score=43.45  Aligned_cols=79  Identities=11%  Similarity=0.085  Sum_probs=54.7

Q ss_pred             ecCCeeEEEeccCc-ccCCCC-CccchHHHHHHHHH-cCCCccccccccCCchHHHHHHHHHHHHhCCC-----cEEEe-
Q psy16850         48 TDSEKEVTVYCSND-YLGMSC-HPKVKSAVREALEK-FGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-----AGLVF-  118 (174)
Q Consensus        48 ~~~g~~~inf~Snd-YLGL~~-~p~v~~a~~~al~~-~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-----~al~f-  118 (174)
                      ..+|+++|+|.+.- -+.|.+ ||+|.+|+.+.+++ .....  .   .-.++...+|-++|++.+..+     ...+| 
T Consensus        59 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~--~---~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~  133 (464)
T PRK06938         59 DVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHT--L---DLTTPVKDQFVQDLFASLPEAFAREAKIQFCG  133 (464)
T ss_pred             eCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccc--c---ccCCHHHHHHHHHHHHhCcccccccceEEEeC
Confidence            46899999997652 233443 99999999998864 22221  1   113577788888888876432     45565 


Q ss_pred             cchhHHHHHHHHH
Q psy16850        119 TSCYVANDSTLFT  131 (174)
Q Consensus       119 ~sGy~aN~~~i~a  131 (174)
                      +||-.||-+.|..
T Consensus       134 ~SGSEAve~Alkl  146 (464)
T PRK06938        134 PTGTDAVEAALKL  146 (464)
T ss_pred             CCcHHHHHHHHHH
Confidence            6999999999884

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=93.03  E-value=0.72  Score=42.28  Aligned_cols=78  Identities=9%  Similarity=-0.008  Sum_probs=53.0

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHH--HHHcCCCccccccccCCchHHHHHHHHHHH----Hh--CCCcEE
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREA--LEKFGTGAGGTRNISGNSLFHEKLEEDVAR----LH--QKEAGL  116 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~a--l~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~----~~--g~e~al  116 (174)
                      ..+|+++|+|.|.   .-|| ..||+|.+|+.+.  ...+-..+   .  . .+....+|.++|++    ..  +.+.+.
T Consensus        54 D~dG~~ylD~~sg~~~~~lG-h~~p~i~~Ai~~q~~~~~l~~~~---~--~-~~~~~~~la~~l~~~l~~~~p~~~~~v~  126 (464)
T TIGR00699        54 DVDGNRLLDLYSQISSIPIG-YNNPALLKAAQSPEMATTLINRP---A--L-GNFPSKDWAKILKEGILKVAPKGQDQVW  126 (464)
T ss_pred             eCCCCEEEEccCCHhhhcCC-CCCHHHHHHHHHHHHHHhhcccc---c--C-CcHHHHHHHHHHHHhHHhhCCCCcCEEE
Confidence            4689999999874   3455 2499999999984  33322111   1  1 23456677777654    54  346788


Q ss_pred             EecchhHHHHHHHHHh
Q psy16850        117 VFTSCYVANDSTLFTL  132 (174)
Q Consensus       117 ~f~sGy~aN~~~i~aL  132 (174)
                      +.+||-.||-+.|..-
T Consensus       127 f~~SGsEAvE~AlKlA  142 (464)
T TIGR00699       127 TGMSGSDANELAFKAA  142 (464)
T ss_pred             EeCCcHHHHHHHHHHH
Confidence            8999999999988754

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=92.80  E-value=0.22  Score=36.87  Aligned_cols=36  Identities=33%  Similarity=0.381  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHh--CCCcEEEecchhHHHHHHHHHhcc
Q psy16850         99 HEKLEEDVARLH--QKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        99 ~~~LE~~lA~~~--g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      ++++++.+++++  +.+.+++.++|..|+..++.++..
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~   39 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG   39 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC
Confidence            578999999999  999999999999999999999965

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK05957 aspartate aminotransferase; Provisional

Probab=92.77  E-value=2  Score=37.61  Aligned_cols=79  Identities=10%  Similarity=0.063  Sum_probs=50.4

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC----CcEEEecchhHH-HHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK----EAGLVFTSCYVA-NDS  127 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~----e~al~f~sGy~a-N~~  127 (174)
                      .+++|+.++.= +...+.+++|+.+.+.....  ..-....|...+.+.+.+.+++++|.    ++.|++++|-.. -..
T Consensus        28 ~~~~l~~g~~~-~~~~~~~~~a~~~~~~~~~~--~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~  104 (389)
T PRK05957         28 GTISLGQGVVS-YPPPPEAIEALNNFLANPEN--HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN  104 (389)
T ss_pred             CeEEccCCCCC-CCCCHHHHHHHHHHHhCCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence            35777765432 44567777777776653322  11223467788999999999999985    567888888643 334


Q ss_pred             HHHHhcc
Q psy16850        128 TLFTLGK  134 (174)
Q Consensus       128 ~i~aL~~  134 (174)
                      ++.++++
T Consensus       105 ~~~~~~~  111 (389)
T PRK05957        105 AILAITD  111 (389)
T ss_pred             HHHHhcC
Confidence            4555544

>PLN02656 tyrosine transaminase

Probab=92.32  E-value=1.9  Score=38.14  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             CCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--------CcEEEe
Q psy16850         50 SEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--------EAGLVF  118 (174)
Q Consensus        50 ~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--------e~al~f  118 (174)
                      +|+.+|+|+--|   +..+...+.+++++.++++.-..      .-++...-..+|.+.+|+|++.        +..++.
T Consensus        29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t  102 (409)
T PLN02656         29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKF------NGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFIT  102 (409)
T ss_pred             cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEe
Confidence            466788887432   34566678889988888764211      1122223356788888888752        456666


Q ss_pred             cchhHHHHHHHHHhcc
Q psy16850        119 TSCYVANDSTLFTLGK  134 (174)
Q Consensus       119 ~sGy~aN~~~i~aL~~  134 (174)
                      +.+-.+-..++.++++
T Consensus       103 ~G~~~al~~~~~~l~~  118 (409)
T PLN02656        103 SGCTQAIDVALSMLAR  118 (409)
T ss_pred             CChHHHHHHHHHHHhC
Confidence            6667776667777765

>PRK07683 aminotransferase A; Validated

Probab=92.27  E-value=2  Score=37.47  Aligned_cols=75  Identities=15%  Similarity=0.065  Sum_probs=48.3

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CC-cEEEecchh
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KE-AGLVFTSCY  122 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e-~al~f~sGy  122 (174)
                      ..+|+|+.++ -.+...+.+++++.+++.....+       ++...-..+|++++|+|++        .+ ..++.+++.
T Consensus        28 ~~~i~l~~~~-p~~~~~~~~~~a~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~   99 (387)
T PRK07683         28 DNLISLTIGQ-PDFPTPSHVKEAAKRAITENYTS-------YTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGAS   99 (387)
T ss_pred             CCeEEecCCC-CCCCCCHHHHHHHHHHHhcCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChH
Confidence            4578888885 44555677888888887642211       2222336788889999883        22 345555558


Q ss_pred             HHHHHHHHHhcc
Q psy16850        123 VANDSTLFTLGK  134 (174)
Q Consensus       123 ~aN~~~i~aL~~  134 (174)
                      .|...++.++.+
T Consensus       100 ~al~~~~~~l~~  111 (387)
T PRK07683        100 EAIDIAFRTILE  111 (387)
T ss_pred             HHHHHHHHHhCC
Confidence            887778888764

>PRK08354 putative aminotransferase; Provisional

Probab=91.78  E-value=2.5  Score=35.81  Aligned_cols=92  Identities=13%  Similarity=0.088  Sum_probs=58.4

Q ss_pred             eeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHH
Q psy16850         52 KEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF  130 (174)
Q Consensus        52 ~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~  130 (174)
                      ..+|+|++| |.++   .|.+++++.++++..          . ..+....|++++|+++|.+  |+.++|-.--+.++.
T Consensus         8 ~~~i~l~~~~np~~---p~~~~~a~~~~~~~~----------~-~yp~~~~l~~~ia~~~~~~--I~vt~G~~~al~~~~   71 (311)
T PRK08354          8 EGLIDFSASVNPYP---PEWLDEMFERAKEIS----------G-RYTYYEWLEEEFSKLFGEP--IVITAGITEALYLIG   71 (311)
T ss_pred             cceeEecCCCCCCC---CHHHHHHHHHHHHHh----------h-cCCChHHHHHHHHHHHCCC--EEECCCHHHHHHHHH
Confidence            458999999 7664   367777777665421          1 1234678999999999953  667777666555555


Q ss_pred             HhcccCCCCeeE-----------------EEEEEecCCCHHHHHHHHHH
Q psy16850        131 TLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       131 aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~  162 (174)
                      .+..  +|..+.                 +++.. -..|++.|++.+++
T Consensus        72 ~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~-~~~d~~~l~~~~~~  117 (311)
T PRK08354         72 ILAL--RDRKVIIPRHTYGEYERVARFFAARIIK-GPNDPEKLEELVER  117 (311)
T ss_pred             HhhC--CCCeEEEeCCCcHHHHHHHHHcCCEEee-cCCCHHHHHHhhcC
Confidence            5433  444333                 13333 35788888887763

>PRK08068 transaminase; Reviewed

Probab=91.76  E-value=2.6  Score=36.69  Aligned_cols=77  Identities=13%  Similarity=-0.066  Sum_probs=47.1

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC---Cc-EEEecchh
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK---EA-GLVFTSCY  122 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~---e~-al~f~sGy  122 (174)
                      ++.+|+|+.|+. ++...|.+++++.++++....      ..++...-+.+|.+++|+|+    |.   ++ -|+.++|.
T Consensus        31 ~~~~i~l~~~~p-~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~  103 (389)
T PRK08068         31 GHDVINLGQGNP-DQPTPEHIVEALQEAAENPAN------HKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGG  103 (389)
T ss_pred             CCCeEEecCCCC-CCCCCHHHHHHHHHHHhCCCC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence            456899999975 556678888888887753110      11222233677888888887    42   22 45666665


Q ss_pred             HHHH-HHHHHhcc
Q psy16850        123 VAND-STLFTLGK  134 (174)
Q Consensus       123 ~aN~-~~i~aL~~  134 (174)
                      ...+ .++.++++
T Consensus       104 ~~~l~~~~~~~~~  116 (389)
T PRK08068        104 KAGLVELPQCLMN  116 (389)
T ss_pred             HHHHHHHHHHhCC
Confidence            4443 44566654

>PRK06207 aspartate aminotransferase; Provisional

Probab=91.67  E-value=4.8  Score=35.53  Aligned_cols=81  Identities=12%  Similarity=0.032  Sum_probs=47.1

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-----CcEEEecchhHHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-----EAGLVFTSCYVAND  126 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-----e~al~f~sGy~aN~  126 (174)
                      ...++|+.-+.=-+...|.+++++.+++...+...-  .-..|...+.+.+-+.+++++|.     +..++.+.+-.+-.
T Consensus        39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y--~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~  116 (405)
T PRK06207         39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAY--TEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF  116 (405)
T ss_pred             CCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccC--CCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence            346777743221124467888888888765432111  11245566666777777776673     34555555566666


Q ss_pred             HHHHHhcc
Q psy16850        127 STLFTLGK  134 (174)
Q Consensus       127 ~~i~aL~~  134 (174)
                      .++.+|+.
T Consensus       117 ~~~~~l~~  124 (405)
T PRK06207        117 LAVAATVA  124 (405)
T ss_pred             HHHHHhcC
Confidence            67777765

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=91.64  E-value=0.68  Score=40.84  Aligned_cols=56  Identities=21%  Similarity=0.317  Sum_probs=41.6

Q ss_pred             ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850         69 PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        69 p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      ++.++++.++++. |       .++|..+..+++|+.+++++|.+.++++++|..|-..++.++
T Consensus        11 ~~e~~a~~~~~~~-~-------~~~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al   66 (376)
T TIGR02379        11 GQELEYIAEAISE-G-------KLSGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLL   66 (376)
T ss_pred             HHHHHHHHHHHHc-C-------CccCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHc
Confidence            4446666666543 1       124455789999999999999999999999999866666665

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=91.50  E-value=1.7  Score=37.20  Aligned_cols=59  Identities=17%  Similarity=0.000  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhCCC-cEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCHHHHHHHH
Q psy16850         99 HEKLEEDVARLHQKE-AGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEAS  160 (174)
Q Consensus        99 ~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L  160 (174)
                      ..+|++.||+++|.+ +.+++++|-...+.++..+..  +| ...                 ++++.++  |+++|++.+
T Consensus        49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~--~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~--d~~~l~~~~  123 (330)
T TIGR01140        49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLA--PG-RVLVLAPTYSEYARAWRAAGHEVVELP--DLDRLPAAL  123 (330)
T ss_pred             HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC--CC-eEEEeCCCcHHHHHHHHHcCCEEEEeC--CHHHHHhhc
Confidence            489999999999975 789999999988888766653  33 221                 2455555  888888877


Q ss_pred             HH
Q psy16850        161 KE  162 (174)
Q Consensus       161 ~~  162 (174)
                      ++
T Consensus       124 ~~  125 (330)
T TIGR01140       124 EE  125 (330)
T ss_pred             cc
Confidence            43

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=91.48  E-value=1.2  Score=38.20  Aligned_cols=64  Identities=25%  Similarity=0.315  Sum_probs=43.7

Q ss_pred             CccchHHHHHHHHH-cCCCccccccc-cC--CchHHHHHHHHHHHHhCCC-cEEEecchh-HHHHHHHHHhc
Q psy16850         68 HPKVKSAVREALEK-FGTGAGGTRNI-SG--NSLFHEKLEEDVARLHQKE-AGLVFTSCY-VANDSTLFTLG  133 (174)
Q Consensus        68 ~p~v~~a~~~al~~-~G~gs~~Sr~~-~G--~~~~~~~LE~~lA~~~g~e-~al~f~sGy-~aN~~~i~aL~  133 (174)
                      ++.+++++.+.+.. ++  ..+++.. .+  ...++++++++||+++|.+ +.++|++|. .++..++.++.
T Consensus        11 ~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~   80 (353)
T TIGR03235        11 DPAVAEAMLPWLLEEFG--NPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLA   80 (353)
T ss_pred             CHHHHHHHHHHHHhcCC--CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHH
Confidence            67788888887754 43  3333322 12  2367899999999999975 467777764 57777777765

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=91.19  E-value=0.77  Score=41.49  Aligned_cols=105  Identities=25%  Similarity=0.319  Sum_probs=60.4

Q ss_pred             ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHH----HHHHHHhCCC----cE-EEecchhHHHHH
Q psy16850         58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLE----EDVARLHQKE----AG-LVFTSCYVANDS  127 (174)
Q Consensus        58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE----~~lA~~~g~e----~a-l~f~sGy~aN~~  127 (174)
                      +|-||+    +|.++++.-..+ .+|--|.-|.|...| .....++|    +.+.++||.+    -| +=.-||-.||++
T Consensus        27 aSEN~~----Sp~v~~al~S~l~nkyaeg~pg~ryy~G-~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~a  101 (399)
T PF00464_consen   27 ASENYM----SPAVREALGSDLTNKYAEGYPGKRYYGG-CEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLA  101 (399)
T ss_dssp             TT---------HHHHHHHTSGGGGS-TTEETTEESSSS-THHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHH
T ss_pred             Cccccc----CHHHHHHhCCcceeeccccCCCcccccC-cchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHH
Confidence            355554    455555543332 456667777787665 45566655    4567889998    55 557899999999


Q ss_pred             HHHHhcccCCCCeeE---------------------------EEEEEecCC------CHHHHHHHHHHhcccccc
Q psy16850        128 TLFTLGKMIPYFTEL---------------------------IYFYRFLAN------TTDIIKEASKELQEDMID  169 (174)
Q Consensus       128 ~i~aL~~~~~g~~~s---------------------------~~~~~f~HN------d~~~Le~~L~~~~~~~~~  169 (174)
                      ++.+|.+  ||+++.                           -.++.|+=+      |++.|++++++..|..|=
T Consensus       102 v~~aLl~--pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi  174 (399)
T PF00464_consen  102 VYMALLK--PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLII  174 (399)
T ss_dssp             HHHHHT---TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEE
T ss_pred             HHHHHHh--hcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEE
Confidence            9999987  444332                           134455534      899999999999987763

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK07550 hypothetical protein; Provisional

Probab=91.15  E-value=6  Score=34.35  Aligned_cols=104  Identities=15%  Similarity=0.014  Sum_probs=56.9

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEEecch-h
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLVFTSC-Y  122 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~f~sG-y  122 (174)
                      +...++|++++ ..+...+.+.++..+++..   +..   ..++...-..+|++.+|++++       .++.|++++| -
T Consensus        28 ~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~---~~~---~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~  100 (386)
T PRK07550         28 DGPLIDLSQAV-PGYPPPPELLRALAEAAAD---PAA---HLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCN  100 (386)
T ss_pred             CCCeEEeCCCC-CCCCCCHHHHHHHHHHHhC---cCC---cCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcH
Confidence            34578888886 4444566677777666531   111   111222225566666666653       2345777777 4


Q ss_pred             HHHHHHHHHhcccCCCCeeE-----------------EEEEEec----CC---CHHHHHHHHHHh
Q psy16850        123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFL----AN---TTDIIKEASKEL  163 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~----HN---d~~~Le~~L~~~  163 (174)
                      .+...++.++.+  +|+.+.                 +.++.++    ++   |.++||+.+++.
T Consensus       101 ~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~  163 (386)
T PRK07550        101 QAFWAAMVTLAG--AGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPR  163 (386)
T ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhccc
Confidence            566666667754  444332                 1233332    22   678888888753

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=90.76  E-value=3.3  Score=37.08  Aligned_cols=78  Identities=13%  Similarity=0.092  Sum_probs=49.7

Q ss_pred             CeeEEEeccC--cccC-CCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--------CcEEEec
Q psy16850         51 EKEVTVYCSN--DYLG-MSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--------EAGLVFT  119 (174)
Q Consensus        51 g~~~inf~Sn--dYLG-L~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--------e~al~f~  119 (174)
                      |+++|+|+.=  +..+ +...|++++++.++++.-...      -++...-..+|.+.+|++++.        ++.++.+
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~  124 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYN------SYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTA  124 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCC------CCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeC
Confidence            6678888764  3333 666788889888887642111      111222356788888888853        4566666


Q ss_pred             chhHHHHHHHHHhcc
Q psy16850        120 SCYVANDSTLFTLGK  134 (174)
Q Consensus       120 sGy~aN~~~i~aL~~  134 (174)
                      .+-.+...++.+|.+
T Consensus       125 G~~~al~l~~~~l~~  139 (430)
T PLN00145        125 GCAQAIEIIMSVLAQ  139 (430)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            667777777778765

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=90.61  E-value=1.3  Score=39.98  Aligned_cols=85  Identities=22%  Similarity=0.142  Sum_probs=68.6

Q ss_pred             HHHHHHcC---CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE----------
Q psy16850         76 REALEKFG---TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL----------  142 (174)
Q Consensus        76 ~~al~~~G---~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s----------  142 (174)
                      ..+...|+   .|.-=||+.+   +....||+.||.+=|.-.|+.++||.+|-.-+|-.|++  +|++.-          
T Consensus        41 ~haa~lF~l~~~G~iYsRi~N---PT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~--aGD~iVss~~LYGGT~  115 (426)
T COG2873          41 DHAAALFGLKEPGNIYTRIMN---PTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAG--AGDNIVSSSKLYGGTY  115 (426)
T ss_pred             HHHHHHhCCCcCCceeeeccC---chHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhcc--CCCeeEeeccccCchH
Confidence            34455565   3666788865   77899999999999999999999999999999999987  455432          


Q ss_pred             -----------EEEEEecCCCHHHHHHHHHHhcc
Q psy16850        143 -----------IYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       143 -----------~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                                 +++......|++.+++.+++..+
T Consensus       116 ~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTk  149 (426)
T COG2873         116 NLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTK  149 (426)
T ss_pred             HHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccc
Confidence                       36777889999999999887765

>PRK06348 aspartate aminotransferase; Provisional

Probab=90.29  E-value=4.1  Score=35.45  Aligned_cols=78  Identities=13%  Similarity=0.053  Sum_probs=45.8

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecchhHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTSCYVA  124 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~sGy~a  124 (174)
                      .+|+|+.++ ..+...|++++++.+.+.. +      -.-++...-..+|.+.||+|+.        .+..++.+.+..+
T Consensus        30 ~~i~l~~g~-p~~~~~~~~~~~~~~~~~~-~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~a  101 (384)
T PRK06348         30 DIIDLSLGD-PDLITDESIINAAFEDAKK-G------HTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHG  101 (384)
T ss_pred             CcEEcCCCC-CCCCCCHHHHHHHHHHHhc-C------CCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHH
Confidence            468888764 3455567777766654422 1      1112333335678888888873        3455666666666


Q ss_pred             HHHHHHHhcccCCCCe
Q psy16850        125 NDSTLFTLGKMIPYFT  140 (174)
Q Consensus       125 N~~~i~aL~~~~~g~~  140 (174)
                      ...++.++++  +|.+
T Consensus       102 l~~~~~~~~~--~gd~  115 (384)
T PRK06348        102 MYLALQSILD--PGDE  115 (384)
T ss_pred             HHHHHHHhcC--CCCE
Confidence            6677777765  4443

>PRK07682 hypothetical protein; Validated

Probab=90.28  E-value=3.7  Score=35.46  Aligned_cols=74  Identities=15%  Similarity=0.073  Sum_probs=44.1

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----C----C-cEEEecchhH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----K----E-AGLVFTSCYV  123 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~----e-~al~f~sGy~  123 (174)
                      .+|+|+.++- .+...+.+++++.++++. +.      .-++...-+.+|.+.+|+|++    .    + ..++.+.|..
T Consensus        21 ~~i~l~~~~~-~~~~~~~~~~~~~~~~~~-~~------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~   92 (378)
T PRK07682         21 GVISLGVGEP-DFVTPWNVREASIRSLEQ-GY------TSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQ   92 (378)
T ss_pred             CeEEeCCCCC-CCCCCHHHHHHHHHHHhc-CC------CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHH
Confidence            3678877653 344566678887777643 11      112222336677777777774    2    2 3555555577


Q ss_pred             HHHHHHHHhcc
Q psy16850        124 ANDSTLFTLGK  134 (174)
Q Consensus       124 aN~~~i~aL~~  134 (174)
                      |...++.++++
T Consensus        93 al~~~~~~l~~  103 (378)
T PRK07682         93 ALDVAMRAIIN  103 (378)
T ss_pred             HHHHHHHHhCC
Confidence            88888888865

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=90.22  E-value=1.8  Score=36.45  Aligned_cols=39  Identities=15%  Similarity=0.104  Sum_probs=33.1

Q ss_pred             chHHHHHHHHHHHHhCCCc----EEEecchhHHHHHHHHHhcc
Q psy16850         96 SLFHEKLEEDVARLHQKEA----GLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~----al~f~sGy~aN~~~i~aL~~  134 (174)
                      ..+.+++++.||+++|.++    .++.++|..++..++.++..
T Consensus        30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~   72 (355)
T TIGR03301        30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP   72 (355)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC
Confidence            3789999999999999863    34678999999999998864

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=90.14  E-value=1.1  Score=39.17  Aligned_cols=78  Identities=17%  Similarity=0.192  Sum_probs=52.4

Q ss_pred             CeeEEEeccCccc---CCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEEecc
Q psy16850         51 EKEVTVYCSNDYL---GMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLVFTS  120 (174)
Q Consensus        51 g~~~inf~SndYL---GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~f~s  120 (174)
                      ++.+++|+.++.-   .+.-.+.+++++.++++...      ..-++...-..+|.+.+|++++       .+..++.+.
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G  103 (401)
T TIGR01264        30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGK------YNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSG  103 (401)
T ss_pred             CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccC------CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcC
Confidence            3568999998873   46678889999888776421      1112223335778889999987       345566666


Q ss_pred             hhHHHHHHHHHhcc
Q psy16850        121 CYVANDSTLFTLGK  134 (174)
Q Consensus       121 Gy~aN~~~i~aL~~  134 (174)
                      +-.+...++.+++.
T Consensus       104 ~~~al~~~~~~l~~  117 (401)
T TIGR01264       104 CSHAIEMCIAALAN  117 (401)
T ss_pred             hHHHHHHHHHHhCC
Confidence            67777777777765

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=89.83  E-value=5  Score=35.05  Aligned_cols=102  Identities=15%  Similarity=0.064  Sum_probs=60.4

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---------CcEEEecchh
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---------EAGLVFTSCY  122 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---------e~al~f~sGy  122 (174)
                      ..+|+|++++ ..+...|.+.+++.+++... ..      -++...-..+|++.+|++++.         +..++.+.|-
T Consensus        30 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~------~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~  101 (391)
T PRK07309         30 PGILKLTLGE-PDFTTPDHVKEAAKRAIDAN-QS------HYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGAT  101 (391)
T ss_pred             CCeEEcCCCC-CCCCCCHHHHHHHHHHHhcC-CC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChH
Confidence            3578888764 34555677888888776531 11      011122257888888888742         2455555556


Q ss_pred             HHHHHHHHHhcccCCCCeeE-----------------EEEEEecC------CCHHHHHHHHHHh
Q psy16850        123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA------NTTDIIKEASKEL  163 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H------Nd~~~Le~~L~~~  163 (174)
                      .+...++.++.+  +|..+.                 ++++.++.      -|++.|++.+++.
T Consensus       102 ~al~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~  163 (391)
T PRK07309        102 EALSASLTAILE--PGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQ  163 (391)
T ss_pred             HHHHHHHHHhcC--CCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhcc
Confidence            777777777765  233221                 23444433      2678898888754

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=89.66  E-value=7.9  Score=33.74  Aligned_cols=75  Identities=12%  Similarity=0.084  Sum_probs=49.5

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchhHHH-HH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCYVAN-DS  127 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~aN-~~  127 (174)
                      +++.+|+|++|. -.+...|++++++.+++....      +  + ...-+.+|-+.||+++|.+. -|++++|-..- ..
T Consensus        27 ~~~~~i~l~~ne-n~~~~~~~v~~a~~~~~~~~~------~--Y-p~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~   96 (366)
T PRK01533         27 GDHSFVKLASNE-NPFGCSPRVLDELQKSWLDHA------L--Y-PDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQI   96 (366)
T ss_pred             CCCceEEeCCCC-CCCCCCHHHHHHHHHHHHhcC------c--C-CCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHH
Confidence            345789998876 357778899999888765421      1  1 11225779999999998643 57777775543 44


Q ss_pred             HHHHhcc
Q psy16850        128 TLFTLGK  134 (174)
Q Consensus       128 ~i~aL~~  134 (174)
                      ++.++++
T Consensus        97 ~~~~l~~  103 (366)
T PRK01533         97 ISRAVLK  103 (366)
T ss_pred             HHHHhcC
Confidence            5556654

>PRK06107 aspartate aminotransferase; Provisional

Probab=89.20  E-value=3  Score=36.65  Aligned_cols=80  Identities=11%  Similarity=0.071  Sum_probs=51.7

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc---EEEecchh-HHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA---GLVFTSCY-VAND  126 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~---al~f~sGy-~aN~  126 (174)
                      +..+++|+.++ -.+...|.+.+++.++++..-.+.   ....|...+.+.+.+.+++++|.+.   -+++++|- .|..
T Consensus        32 ~~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~  107 (402)
T PRK06107         32 GRSIVDLTVGE-PDFDTPDHIKQAAVAAIERGETKY---TLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF  107 (402)
T ss_pred             cCCEEEcCCCC-CCCCCCHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence            45678888765 455567888888888876421111   1224666777888888888877643   37777774 5555


Q ss_pred             HHHHHhcc
Q psy16850        127 STLFTLGK  134 (174)
Q Consensus       127 ~~i~aL~~  134 (174)
                      .++.++++
T Consensus       108 ~~~~~~~~  115 (402)
T PRK06107        108 LALMATLE  115 (402)
T ss_pred             HHHHHhcC
Confidence            56666654

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=88.89  E-value=5.5  Score=34.85  Aligned_cols=73  Identities=11%  Similarity=-0.006  Sum_probs=45.1

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDSTL  129 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~i  129 (174)
                      +..+|+|++|. -.+...|.+++++.+. ...        ..+.. ..+.+|.+.||+++|.+ +.|++++|....+.++
T Consensus        51 ~~~~i~l~~n~-~p~~~~~~v~~a~~~~-~~~--------~~Yp~-~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~  119 (380)
T PLN03026         51 PEDIVKLDANE-NPYGPPPEVLEALGNM-KFP--------YVYPD-PESRRLRAALAEDSGLESENILVGCGADELIDLL  119 (380)
T ss_pred             ccceEEccCCC-CCCCCCHHHHHHHHhh-Hhh--------ccCCC-CCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHH
Confidence            56789999983 1234457777765431 100        01222 23678999999999955 5688899877655444


Q ss_pred             -HHhcc
Q psy16850        130 -FTLGK  134 (174)
Q Consensus       130 -~aL~~  134 (174)
                       .++..
T Consensus       120 ~~~~~~  125 (380)
T PLN03026        120 MRCVLD  125 (380)
T ss_pred             HHHhcC
Confidence             45543

>PRK07681 aspartate aminotransferase; Provisional

Probab=88.83  E-value=9.4  Score=33.39  Aligned_cols=77  Identities=9%  Similarity=0.065  Sum_probs=44.7

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CC-cEEEecch
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KE-AGLVFTSC  121 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e-~al~f~sG  121 (174)
                      .+..+|+|++|+ ..+...|.+++++.+++......  +-. ..|.    .+|-+.||+|++       .+ +-|++++|
T Consensus        30 ~~~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~--~y~-~~G~----~~lr~aia~~~~~~~g~~~~~~~~I~it~G  101 (399)
T PRK07681         30 AGHKMIDLSIGN-PDMPPADFVREEMVHTANQKESY--GYT-LSGI----QEFHEAVTEYYNNTHNVILNADKEVLLLMG  101 (399)
T ss_pred             cCCCeEEeCCCC-CCCCCCHHHHHHHHHHHhccccC--CCC-CCCc----HHHHHHHHHHHHHHhCCCCCCCCeEEECCC
Confidence            356789999886 34556777888888776542111  000 1343    455566666664       22 46777777


Q ss_pred             hHHHHHH-HHHhcc
Q psy16850        122 YVANDST-LFTLGK  134 (174)
Q Consensus       122 y~aN~~~-i~aL~~  134 (174)
                      -..-+.. +.++++
T Consensus       102 ~~~al~~~~~~~~~  115 (399)
T PRK07681        102 SQDGLVHLPMVYAN  115 (399)
T ss_pred             cHHHHHHHHHHhCC
Confidence            6665544 345544

>PRK08960 hypothetical protein; Provisional

Probab=88.65  E-value=6  Score=34.43  Aligned_cols=76  Identities=17%  Similarity=-0.050  Sum_probs=45.6

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecchh
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTSCY  122 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~sGy  122 (174)
                      +..+++|..++- ++...+.+++++.+++.....+       ++...-..+|.+.||+|++        .+..++.+.+-
T Consensus        31 ~~~~i~l~~g~~-~~~~~~~v~~a~~~~~~~~~~~-------Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~  102 (387)
T PRK08960         31 GHDVIHLEIGEP-DFTTAEPIVAAGQAALAAGHTR-------YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGS  102 (387)
T ss_pred             CCCeEEeCCCCC-CCCCCHHHHHHHHHHHhcCCCc-------cCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcH
Confidence            345788877754 5666788899988887631111       1112235678888888863        33444444455


Q ss_pred             HHHHHHHHHhcc
Q psy16850        123 VANDSTLFTLGK  134 (174)
Q Consensus       123 ~aN~~~i~aL~~  134 (174)
                      .+-..++.++..
T Consensus       103 ~al~~~~~~~~~  114 (387)
T PRK08960        103 GALLLASSLLVD  114 (387)
T ss_pred             HHHHHHHHHhcC
Confidence            555556666654

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=88.48  E-value=0.72  Score=42.47  Aligned_cols=42  Identities=17%  Similarity=-0.045  Sum_probs=37.4

Q ss_pred             cCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         93 SGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        93 ~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      +|..+-+.+||+.+|+++|+|.+|...+|=++|.-+++++++
T Consensus        70 Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~  111 (467)
T TIGR02617        70 YSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK  111 (467)
T ss_pred             cccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcc
Confidence            445566789999999999999999999999999999988876

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK08363 alanine aminotransferase; Validated

Probab=87.92  E-value=3.3  Score=36.22  Aligned_cols=78  Identities=17%  Similarity=0.066  Sum_probs=50.5

Q ss_pred             CCeeEEEeccCccc--CCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-------cEEEecc
Q psy16850         50 SEKEVTVYCSNDYL--GMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-------AGLVFTS  120 (174)
Q Consensus        50 ~g~~~inf~SndYL--GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-------~al~f~s  120 (174)
                      .|..+|+|+..+=.  +|...|.+++++.++++...       ..++...-..+|++.||+|++..       +.+++++
T Consensus        28 ~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~  100 (398)
T PRK08363         28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGH-------NYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTA  100 (398)
T ss_pred             cCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCC-------CCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeC
Confidence            35678888877542  56668888998888775321       11233344788999999997432       2345555


Q ss_pred             h-hHHHHHHHHHhcc
Q psy16850        121 C-YVANDSTLFTLGK  134 (174)
Q Consensus       121 G-y~aN~~~i~aL~~  134 (174)
                      | -.+...++.++++
T Consensus       101 G~~~al~~~~~~~~~  115 (398)
T PRK08363        101 AVTEALQLIFGALLD  115 (398)
T ss_pred             CHHHHHHHHHHHhCC
Confidence            5 5577777777765

>PRK07324 transaminase; Validated

Probab=87.89  E-value=3.3  Score=36.07  Aligned_cols=75  Identities=23%  Similarity=0.147  Sum_probs=48.6

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchhHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCYVANDS  127 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy~aN~~  127 (174)
                      +..+++|+-.+-. +-..+.+ +++.++++....+.+.+   .|    ..+|++.||+|++   .+..++.+.+..++..
T Consensus        25 ~~~~~~~~~~e~~-~~~~~~~-~~~~~~~~~~~~~Y~~~---~G----~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~   95 (373)
T PRK07324         25 ESCIDSLTLEELL-ALAGKNP-EAFYQELGQKKLTYGWI---EG----SPEFKEAVASLYQNVKPENILQTNGATGANFL   95 (373)
T ss_pred             cCCCCCCcHHHHH-hccCcch-HHHHHHHhcCCccCCCC---CC----CHHHHHHHHHHhcCCChhhEEEcCChHHHHHH
Confidence            4445666555543 3334456 88888887644433221   23    4589999999985   2456667777899999


Q ss_pred             HHHHhcc
Q psy16850        128 TLFTLGK  134 (174)
Q Consensus       128 ~i~aL~~  134 (174)
                      ++.++++
T Consensus        96 ~~~~l~~  102 (373)
T PRK07324         96 VLYALVE  102 (373)
T ss_pred             HHHHhCC
Confidence            9999875

>PRK06836 aspartate aminotransferase; Provisional

Probab=87.86  E-value=7.7  Score=33.91  Aligned_cols=78  Identities=18%  Similarity=0.095  Sum_probs=42.7

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-------CcEEEecchh-H
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-------EAGLVFTSCY-V  123 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-------e~al~f~sGy-~  123 (174)
                      ..+++|++++ -.+...+.+.+++.+.++....+.    ..++...-+.+|.+.||++++.       ++-+++++|- .
T Consensus        33 ~~~~~l~~g~-p~~~~~~~v~~a~~~~~~~~~~~~----~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~  107 (394)
T PRK06836         33 DNVFDFSLGN-PSVPPPAAVKEALRELAEEEDPGL----HGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAG  107 (394)
T ss_pred             CCeEEecCcC-CCCCCCHHHHHHHHHHHhcCCcCc----ccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHH
Confidence            4578997764 444444566666666554321111    1123334467777888888752       3335555554 4


Q ss_pred             HHHHHHHHhcc
Q psy16850        124 ANDSTLFTLGK  134 (174)
Q Consensus       124 aN~~~i~aL~~  134 (174)
                      +-..++.++++
T Consensus       108 al~~~~~~l~~  118 (394)
T PRK06836        108 ALNVALKAILN  118 (394)
T ss_pred             HHHHHHHHhcC
Confidence            44455666654

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=87.27  E-value=11  Score=32.44  Aligned_cols=73  Identities=12%  Similarity=0.037  Sum_probs=45.9

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHH-HHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVAND-STLFT  131 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~-~~i~a  131 (174)
                      .+.|++|+= .+...|.+++++.+++...+..    +  ++. ....+|++.||++++.+ +.+++++|-..-+ .++.+
T Consensus        24 ~~~l~~~~~-~~~~p~~~~~a~~~~~~~~~~~----~--y~~-~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~   95 (351)
T PRK14807         24 KYKMDANET-PFELPEEVIKNIQEIVKSSQVN----I--YPD-PTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLA   95 (351)
T ss_pred             eeEccCCCC-CCCCCHHHHHHHHHHhhcCccc----C--CCC-ccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHH
Confidence            356666553 5666788888887766422111    1  111 23588999999999864 5688888877643 34455


Q ss_pred             hcc
Q psy16850        132 LGK  134 (174)
Q Consensus       132 L~~  134 (174)
                      ++.
T Consensus        96 l~~   98 (351)
T PRK14807         96 FIN   98 (351)
T ss_pred             hcC
Confidence            544

>PRK07777 aminotransferase; Validated

Probab=86.78  E-value=12  Score=32.49  Aligned_cols=74  Identities=18%  Similarity=0.049  Sum_probs=43.1

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHH----hCCC-----cEEEecchhH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARL----HQKE-----AGLVFTSCYV  123 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~----~g~e-----~al~f~sGy~  123 (174)
                      ..+||+..+ ......+.+.+++.+++.. +.      .-++...-..+|++.+|++    +|.+     ..++.++|-.
T Consensus        25 ~~i~l~~g~-p~~~~~~~~~~~~~~~~~~-~~------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~   96 (387)
T PRK07777         25 GAVNLGQGF-PDEDGPPEMLEAAQEAIAG-GV------NQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATE   96 (387)
T ss_pred             CeEEccCCC-CCCCCCHHHHHHHHHHHhc-CC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHH
Confidence            467887765 4555556677776666543 11      1122222355666677765    5642     3566666677


Q ss_pred             HHHHHHHHhcc
Q psy16850        124 ANDSTLFTLGK  134 (174)
Q Consensus       124 aN~~~i~aL~~  134 (174)
                      ++..++.++++
T Consensus        97 al~~~~~~~~~  107 (387)
T PRK07777         97 AIAAAVLGLVE  107 (387)
T ss_pred             HHHHHHHHhcC
Confidence            87777887765

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=86.75  E-value=2.4  Score=36.85  Aligned_cols=66  Identities=15%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCC-----chHHHHHHHHHHHHhCCC--cEEEe--cchhHHHHHHHHHhcc
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGN-----SLFHEKLEEDVARLHQKE--AGLVF--TSCYVANDSTLFTLGK  134 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~-----~~~~~~LE~~lA~~~g~e--~al~f--~sGy~aN~~~i~aL~~  134 (174)
                      .|+|++|+.+.+..|+ +.+.+..-.++     ..++++..+.|++|+|.+  .-++|  +||..+.-.++..|..
T Consensus        11 p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~   85 (355)
T cd00611          11 PEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG   85 (355)
T ss_pred             CHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC
Confidence            6788999988887776 44433332322     267899999999999962  33555  4478887777777753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=86.65  E-value=8.8  Score=33.89  Aligned_cols=79  Identities=10%  Similarity=-0.020  Sum_probs=45.9

Q ss_pred             CCeeEEEeccCccc---CCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-------CcEEEec
Q psy16850         50 SEKEVTVYCSNDYL---GMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-------EAGLVFT  119 (174)
Q Consensus        50 ~g~~~inf~SndYL---GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-------e~al~f~  119 (174)
                      .++.+|+|+--|+=   .|...|.+++++.++++.-...      -++...-..+|-+.||+|++.       ++-|+++
T Consensus        30 ~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~------~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it  103 (409)
T PLN00143         30 DHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFN------SYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLT  103 (409)
T ss_pred             CCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCC------CCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEe
Confidence            45678999977764   4677888889988887641111      011112244566667777632       1235555


Q ss_pred             ch-hHHHHHHHHHhcc
Q psy16850        120 SC-YVANDSTLFTLGK  134 (174)
Q Consensus       120 sG-y~aN~~~i~aL~~  134 (174)
                      +| -.+-..++.++++
T Consensus       104 ~G~~~al~~~~~~l~~  119 (409)
T PLN00143        104 LGCKHAAEIIIKVLAR  119 (409)
T ss_pred             cChHHHHHHHHHHHcC
Confidence            55 4455556666655

>PLN02409 serine--glyoxylate aminotransaminase

Probab=86.08  E-value=7.9  Score=34.14  Aligned_cols=62  Identities=16%  Similarity=0.092  Sum_probs=41.8

Q ss_pred             ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc---EEEecchhHHHHHHHHHhcc
Q psy16850         69 PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA---GLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        69 p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~---al~f~sGy~aN~~~i~aL~~  134 (174)
                      ..+.+++.+++.++-.+.. ++   +...+.+++.+.+++++|.+.   +++.++|..++..++..+.+
T Consensus        18 ~~~~~~V~~a~~~~~~~~~-~~---~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~   82 (401)
T PLN02409         18 VNIPERVLRAMNRPNEDHR-SP---AFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLS   82 (401)
T ss_pred             CCCCHHHHHHhcCCCCCCC-CH---HHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCC
Confidence            3445666666544333321 22   235788999999999998753   67888888888888877765

>PRK06290 aspartate aminotransferase; Provisional

Probab=85.74  E-value=17  Score=32.21  Aligned_cols=77  Identities=9%  Similarity=-0.044  Sum_probs=45.4

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CCC-----cEEEecc
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QKE-----AGLVFTS  120 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~e-----~al~f~s  120 (174)
                      .++.+++|++|+ ..+...|.+++++.+++..-...      -++. .-..+|-+.+|+|+    |..     ..|++++
T Consensus        42 ~~~~~i~L~~g~-p~~~~~~~~~~~l~~~~~~~~~~------~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~  113 (410)
T PRK06290         42 PDMELIDMGVGE-PDEMADESVVEVLCEEAKKPENR------GYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSI  113 (410)
T ss_pred             CCCCeEEcCCCC-CCCCCCHHHHHHHHHHHhCCCCC------CCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEcc
Confidence            356789999886 45556777777777655321110      0111 22456677777775    432     3688999


Q ss_pred             hhHHHHHH-HHHhcc
Q psy16850        121 CYVANDST-LFTLGK  134 (174)
Q Consensus       121 Gy~aN~~~-i~aL~~  134 (174)
                      |-..-+.+ +.++++
T Consensus       114 Gs~~al~~~~~~~~~  128 (410)
T PRK06290        114 GSKPALAMLPSCFIN  128 (410)
T ss_pred             CHHHHHHHHHHHhCC
Confidence            98766644 455544

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=85.67  E-value=11  Score=34.63  Aligned_cols=81  Identities=9%  Similarity=-0.044  Sum_probs=52.1

Q ss_pred             CCeeEEEecc-C-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh------C-CCcEEEecc
Q psy16850         50 SEKEVTVYCS-N-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH------Q-KEAGLVFTS  120 (174)
Q Consensus        50 ~g~~~inf~S-n-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~------g-~e~al~f~s  120 (174)
                      .|+.+|+|+. | |-.|+...+++++++.+++... .+       ++...-..+|-+.||+++      + .++-|++++
T Consensus       144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~-~~-------Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~  215 (517)
T PRK13355        144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT-EG-------YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGN  215 (517)
T ss_pred             cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcC-CC-------CCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeC
Confidence            5678899987 4 5668888889999998887431 11       222223667778888887      3 234477777


Q ss_pred             hhHHHH-HHHHHhcccCCCCe
Q psy16850        121 CYVAND-STLFTLGKMIPYFT  140 (174)
Q Consensus       121 Gy~aN~-~~i~aL~~~~~g~~  140 (174)
                      |-..-+ .++.+|++  +|+.
T Consensus       216 G~~eal~~~~~~l~~--~Gd~  234 (517)
T PRK13355        216 GVSELINLSMSALLD--DGDE  234 (517)
T ss_pred             cHHHHHHHHHHHhCC--CCCE
Confidence            766544 45566654  4443

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=85.46  E-value=18  Score=31.25  Aligned_cols=77  Identities=10%  Similarity=-0.058  Sum_probs=44.6

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----C----CcEEEecchh
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----K----EAGLVFTSCY  122 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~----e~al~f~sGy  122 (174)
                      |+.+++|++|+ .++...|.+++++.++++...      -..++...-+.+|.+.+|+|++    .    +.-+++++|-
T Consensus        28 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~  100 (383)
T TIGR03540        28 GVDVISLGIGD-PDLPTPKHIVEALCKAAENPE------NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGS  100 (383)
T ss_pred             CCCeEEeCCCC-CCCCCCHHHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCc
Confidence            45678999987 356667778888887764211      0112222224667777777764    2    2246676665


Q ss_pred             HHHH-HHHHHhcc
Q psy16850        123 VAND-STLFTLGK  134 (174)
Q Consensus       123 ~aN~-~~i~aL~~  134 (174)
                      ...+ .++.++++
T Consensus       101 ~~~l~~~~~~~~~  113 (383)
T TIGR03540       101 KEGIAHIPLAFVN  113 (383)
T ss_pred             HHHHHHHHHHhCC
Confidence            4443 44455554

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PLN02672 methionine S-methyltransferase

Probab=85.23  E-value=13  Score=37.92  Aligned_cols=77  Identities=8%  Similarity=-0.005  Sum_probs=56.2

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc----EEEecchhHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA----GLVFTSCYVAN  125 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~----al~f~sGy~aN  125 (174)
                      +|..+|+|..|+- .+...|.+++++.+++.+...       ..|..++.+.|-+.+++.+|.+.    -|+++.|-..-
T Consensus       695 ~g~~vI~LsinE~-d~ppPp~V~eAi~eal~~~~~-------s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~el  766 (1082)
T PLN02672        695 QESSLIHMDVDES-FLPVPSAVKASIFESFVRQNI-------SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLAL  766 (1082)
T ss_pred             CCCCEEEEeCCCC-CCCCCHHHHHHHHHHHhhcCC-------CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHH
Confidence            4668899988763 566788999999888765432       23566788999999999988754    48888887655


Q ss_pred             H-HHHHHhcc
Q psy16850        126 D-STLFTLGK  134 (174)
Q Consensus       126 ~-~~i~aL~~  134 (174)
                      + .++.++++
T Consensus       767 L~lll~aLl~  776 (1082)
T PLN02672        767 FNKLVLCCVQ  776 (1082)
T ss_pred             HHHHHHHHcC
Confidence            5 35566765

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=85.16  E-value=8.6  Score=33.09  Aligned_cols=74  Identities=11%  Similarity=0.011  Sum_probs=41.3

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC----cEEEecchhHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE----AGLVFTSCYVAND  126 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e----~al~f~sGy~aN~  126 (174)
                      ++.+++|++++ -.+...|.+++++.++....+-     ....|...+.+++.+.+++.+|..    +.|+.++|-...+
T Consensus        20 ~~~~i~l~~~~-p~~~~~~~~~~~~~~~~~~~~Y-----~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i   93 (357)
T TIGR03539        20 PDGIVDLSVGT-PVDPVPPLIRAALAAAADAPGY-----PQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELV   93 (357)
T ss_pred             CCCeEEccCCC-CCCCCCHHHHHHHHHHHhhCCC-----CcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHH
Confidence            45578888875 2233456677776665432211     112344455555555555544533    5678888877766


Q ss_pred             HHHH
Q psy16850        127 STLF  130 (174)
Q Consensus       127 ~~i~  130 (174)
                      ..+.
T Consensus        94 ~~~~   97 (357)
T TIGR03539        94 AWLP   97 (357)
T ss_pred             HHHH
Confidence            6553

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK05942 aspartate aminotransferase; Provisional

Probab=84.85  E-value=18  Score=31.59  Aligned_cols=77  Identities=5%  Similarity=-0.146  Sum_probs=42.4

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCcEEEecchh
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEAGLVFTSCY  122 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~al~f~sGy  122 (174)
                      |..+|+|++++ ..+...+++.+++.+.+...      ...-++...-..+|.+++|+|+    |    .+.-+++++|-
T Consensus        34 g~~~i~l~~g~-p~~~~p~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~  106 (394)
T PRK05942         34 GLDLIDLGMGN-PDGAAPQPVIEAAIAALADP------QNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGS  106 (394)
T ss_pred             CCCeEEcCCCC-CCCCCCHHHHHHHHHHHhCC------CCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccCh
Confidence            45689998764 44444556777777665421      1122333333567888888887    3    23346656664


Q ss_pred             HH-HHHHHHHhcc
Q psy16850        123 VA-NDSTLFTLGK  134 (174)
Q Consensus       123 ~a-N~~~i~aL~~  134 (174)
                      .. -..++.++++
T Consensus       107 ~~al~~~~~~~~~  119 (394)
T PRK05942        107 KEGLTHLALAYVN  119 (394)
T ss_pred             HHHHHHHHHHhCC
Confidence            43 3344445554

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=84.68  E-value=4.5  Score=35.49  Aligned_cols=78  Identities=21%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             CeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--------CcEEEec
Q psy16850         51 EKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--------EAGLVFT  119 (174)
Q Consensus        51 g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--------e~al~f~  119 (174)
                      |..+++|+.-+-   -.+.-.+++++++.+.++....      ..++...-..+|.+.||++++.        +..++.+
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~  103 (403)
T TIGR01265        30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKF------NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTS  103 (403)
T ss_pred             CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEec
Confidence            456777776653   2344567888888877643111      1123334467888999999984        4466666


Q ss_pred             chhHHHHHHHHHhcc
Q psy16850        120 SCYVANDSTLFTLGK  134 (174)
Q Consensus       120 sGy~aN~~~i~aL~~  134 (174)
                      +|-.+...++.++++
T Consensus       104 G~t~al~~~~~~l~~  118 (403)
T TIGR01265       104 GCSQAIEICIEALAN  118 (403)
T ss_pred             ChHHHHHHHHHHhCC
Confidence            667887788888864

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK14012 cysteine desulfurase; Provisional

Probab=84.42  E-value=5.7  Score=34.83  Aligned_cols=64  Identities=14%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             CccchHHHHHHHH---HcCCCccccccc-cC--CchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHHHHhc
Q psy16850         68 HPKVKSAVREALE---KFGTGAGGTRNI-SG--NSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        68 ~p~v~~a~~~al~---~~G~gs~~Sr~~-~G--~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i~aL~  133 (174)
                      .+.+++++.+.+.   .++.  .+++.. .+  .....+++|+.+|+++|.+.  +++.++|..++..++.++.
T Consensus        16 ~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~   87 (404)
T PRK14012         16 DPRVAEKMMPYLTMDGTFGN--PASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAA   87 (404)
T ss_pred             CHHHHHHHHHHHHhcccCcC--CCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHH
Confidence            5667777777664   3332  222111 11  13568899999999999854  6777777777766666654

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=84.09  E-value=16  Score=31.54  Aligned_cols=101  Identities=13%  Similarity=0.035  Sum_probs=58.9

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHH-H
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDS-T  128 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~-~  128 (174)
                      +..+|+|+.|.-- +...|.+++++.+..+...        .++...- .+|.+.||+++|.+ +.|++++|-.--+. +
T Consensus        35 ~~~~i~l~~~~~~-~~~~~~~~~al~~~~~~~~--------~Y~~~~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~  104 (371)
T PRK05166         35 VPRIAKLGSNENP-LGPSPAVRRAFADIAELLR--------LYPDPQG-RALREAIAARTGVPADRIILGNGSEDLIAVI  104 (371)
T ss_pred             CcceEEcCCCCCC-CCCCHHHHHHHHHHHHHhh--------cCCCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHH
Confidence            4578999987422 3456777777765433210        1222222 37999999999854 45888888765544 3


Q ss_pred             HHHhcccCCCCeeE-----------------EEEEEecC-----CCHHHHHHHHHHh
Q psy16850        129 LFTLGKMIPYFTEL-----------------IYFYRFLA-----NTTDIIKEASKEL  163 (174)
Q Consensus       129 i~aL~~~~~g~~~s-----------------~~~~~f~H-----Nd~~~Le~~L~~~  163 (174)
                      +.++.+  +|....                 +.++.++-     -|+++|++.+...
T Consensus       105 ~~~~~~--~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~  159 (371)
T PRK05166        105 CRAVLR--PGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARA  159 (371)
T ss_pred             HHHhcC--CCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcC
Confidence            455544  343322                 23333322     3688888877653

>TIGR02006 IscS cysteine desulfurase IscS

Probab=84.02  E-value=5.2  Score=35.09  Aligned_cols=65  Identities=23%  Similarity=0.241  Sum_probs=39.9

Q ss_pred             CccchHHHHHHHHHcCCCccccccc-cC--CchHHHHHHHHHHHHhCCC-cEEEecch-hHHHHHHHHHhc
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNI-SG--NSLFHEKLEEDVARLHQKE-AGLVFTSC-YVANDSTLFTLG  133 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~-~G--~~~~~~~LE~~lA~~~g~e-~al~f~sG-y~aN~~~i~aL~  133 (174)
                      +|.+++++.+.++.+. +..+++.. .+  .....+++++.||+++|.+ +.++|++| -.++..++.++.
T Consensus        16 ~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~   85 (402)
T TIGR02006        16 DPRVAEKMMPYLTEKF-GNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIA   85 (402)
T ss_pred             CHHHHHHHHHHHHhcC-CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHH
Confidence            7778888877775442 22222111 11  1357889999999999975 34555554 457666666653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>KOG0053|consensus

Probab=83.58  E-value=2.3  Score=38.58  Aligned_cols=68  Identities=21%  Similarity=0.068  Sum_probs=49.5

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeEEE------------------EEEecCCCHHHHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTELIY------------------FYRFLANTTDIIK  157 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s~~------------------~~~f~HNd~~~Le  157 (174)
                      .+.-..||+.+|+..|.+.|++|+||..|-..++-.|..  .|++.-+.                  -..-.+=|+++++
T Consensus        76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~--~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~  153 (409)
T KOG0053|consen   76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLP--AGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLK  153 (409)
T ss_pred             CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcC--CCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHH
Confidence            467889999999999999999999999888888888876  44444310                  0122345777777


Q ss_pred             HHHHHhcc
Q psy16850        158 EASKELQE  165 (174)
Q Consensus       158 ~~L~~~~~  165 (174)
                      .+++...+
T Consensus       154 ~~~~~i~~  161 (409)
T KOG0053|consen  154 KILKAIKE  161 (409)
T ss_pred             HHHHhhcc
Confidence            77766665

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=83.39  E-value=12  Score=32.47  Aligned_cols=69  Identities=12%  Similarity=0.031  Sum_probs=39.5

Q ss_pred             cCCCCCccchHHHHHHHHHcCCCc--cccccccCCchHHHHHHHHHHHHhCCC--cEEEecch-hHHHHHHHHHh
Q psy16850         63 LGMSCHPKVKSAVREALEKFGTGA--GGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSC-YVANDSTLFTL  132 (174)
Q Consensus        63 LGL~~~p~v~~a~~~al~~~G~gs--~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sG-y~aN~~~i~aL  132 (174)
                      .|+ ..+.+++++.+.++.+....  +....-.-.....+++.+.||+++|.+  +.++|++| ..+.-.++.++
T Consensus        25 ~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~   98 (398)
T TIGR03392        25 TAL-KPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSY   98 (398)
T ss_pred             ccC-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHh
Confidence            354 34678888888776543211  111110011246778889999999974  35655555 45555555565

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK09265 aminotransferase AlaT; Validated

Probab=83.14  E-value=19  Score=31.48  Aligned_cols=77  Identities=9%  Similarity=-0.031  Sum_probs=47.3

Q ss_pred             CCeeEEEecc-C-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEEecc
Q psy16850         50 SEKEVTVYCS-N-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLVFTS  120 (174)
Q Consensus        50 ~g~~~inf~S-n-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~f~s  120 (174)
                      .|+.+++|++ | +-.++...|++.+++.+.+...        ..++...-..+|-+.+|+|++       .++-|++++
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~--------~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~  102 (404)
T PRK09265         31 EGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTA--------QGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGN  102 (404)
T ss_pred             cCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcC--------CCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeC
Confidence            4567888876 3 2336777788888887765321        112222224578888888872       233577888


Q ss_pred             hhHHHH-HHHHHhcc
Q psy16850        121 CYVAND-STLFTLGK  134 (174)
Q Consensus       121 Gy~aN~-~~i~aL~~  134 (174)
                      |-..-+ .++.++++
T Consensus       103 G~~~~l~~~~~~~~~  117 (404)
T PRK09265        103 GVSELIVMAMQALLN  117 (404)
T ss_pred             ChHHHHHHHHHHhCC
Confidence            876644 56666654

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=83.04  E-value=9  Score=32.96  Aligned_cols=76  Identities=16%  Similarity=0.052  Sum_probs=42.7

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC----CcEEEecchhHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK----EAGLVFTSCYVAND  126 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~----e~al~f~sGy~aN~  126 (174)
                      +..+++|++++ ......|.+++++.++.+..  +.   ....|...+.+.+.+.+.+..|.    ++-|++++|....+
T Consensus        26 ~~~~i~l~~~~-p~~~~~~~~~~~~~~~~~~~--~Y---~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i   99 (364)
T PRK07865         26 PDGIVDLSVGT-PVDPVPPVIQEALAAAADAP--GY---PTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELV   99 (364)
T ss_pred             CCCEEEcCCCC-CCCCCCHHHHHHHHHHHhhC--CC---CCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHH
Confidence            34578999886 33344566777776554321  11   11134344444444444443342    45799999998888


Q ss_pred             HHHHHh
Q psy16850        127 STLFTL  132 (174)
Q Consensus       127 ~~i~aL  132 (174)
                      .++..+
T Consensus       100 ~~~~~~  105 (364)
T PRK07865        100 AWLPTL  105 (364)
T ss_pred             HHHHHH
Confidence            776433

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=82.74  E-value=9.3  Score=32.18  Aligned_cols=39  Identities=18%  Similarity=0.175  Sum_probs=28.2

Q ss_pred             CchHHHHHHHHHH----HHhCCC----cEEEecchhHHHHHHHHHhc
Q psy16850         95 NSLFHEKLEEDVA----RLHQKE----AGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        95 ~~~~~~~LE~~lA----~~~g~e----~al~f~sGy~aN~~~i~aL~  133 (174)
                      ......++|++++    +++|.+    .+++.++|-.+|..++.++.
T Consensus        32 ~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~   78 (345)
T cd06450          32 ESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAAR   78 (345)
T ss_pred             cCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHH
Confidence            3344566777765    455875    68899999999998888774

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=82.51  E-value=6.6  Score=34.29  Aligned_cols=64  Identities=16%  Similarity=0.121  Sum_probs=48.3

Q ss_pred             cchHHHHHHHHHcCCCccccccccCCc-----hHHHHHHHHHHHHhCCC---cEEEe-cchhHHHHHHHHHhcc
Q psy16850         70 KVKSAVREALEKFGTGAGGTRNISGNS-----LFHEKLEEDVARLHQKE---AGLVF-TSCYVANDSTLFTLGK  134 (174)
Q Consensus        70 ~v~~a~~~al~~~G~gs~~Sr~~~G~~-----~~~~~LE~~lA~~~g~e---~al~f-~sGy~aN~~~i~aL~~  134 (174)
                      .|++++.+.+..|. +.+.+....++.     .+++++.+.|+++++.+   .++++ +||..|.=+++..|..
T Consensus         6 ~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~   78 (349)
T TIGR01364         6 EVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA   78 (349)
T ss_pred             HHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC
Confidence            67888888888777 555555554442     56899999999999953   36666 5599999999988875

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PLN02187 rooty/superroot1

Probab=82.48  E-value=24  Score=32.00  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=46.6

Q ss_pred             CeeEEEeccC--cccC-CCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-------CcEEEecc
Q psy16850         51 EKEVTVYCSN--DYLG-MSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-------EAGLVFTS  120 (174)
Q Consensus        51 g~~~inf~Sn--dYLG-L~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-------e~al~f~s  120 (174)
                      ++.+|+|+.=  |+.. +...+++.+++.++++. |.+     .-++...-..+|.+.||+|++.       ++-|++++
T Consensus        65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~-~~~-----~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~  138 (462)
T PLN02187         65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS-GKG-----NSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTA  138 (462)
T ss_pred             CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC-CCC-----CCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeC
Confidence            5678888765  4444 44456778888877753 221     1122333367788889999842       23455555


Q ss_pred             h-hHHHHHHHHHhcc
Q psy16850        121 C-YVANDSTLFTLGK  134 (174)
Q Consensus       121 G-y~aN~~~i~aL~~  134 (174)
                      | -.+-..++.+|++
T Consensus       139 G~~~al~~~~~~l~~  153 (462)
T PLN02187        139 GCNQGIEIVFESLAR  153 (462)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            5 5566666777765

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=82.30  E-value=24  Score=30.54  Aligned_cols=101  Identities=15%  Similarity=0.076  Sum_probs=60.7

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC---------cEEEecchhH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE---------AGLVFTSCYV  123 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e---------~al~f~sGy~  123 (174)
                      .+++|++|+- .+...|.+++++.+++.. +....  +  +. ..-+.+|.+.||+|++..         +-|+.++|-.
T Consensus        29 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~--~--Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~  101 (374)
T PRK02610         29 QLDRLDTNEF-PYDLPPDLKQKLAWLYQQ-GIESN--R--YP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSD  101 (374)
T ss_pred             ceeEecCCCC-CCCCCHHHHHHHHHHHhh-ccccc--C--CC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChH
Confidence            4888988864 677788999998887654 21000  0  11 112578889999999742         2377788876


Q ss_pred             HHHH-HHHHhcccCCCC-eeE-----------------EEEEEec------CCCHHHHHHHHHH
Q psy16850        124 ANDS-TLFTLGKMIPYF-TEL-----------------IYFYRFL------ANTTDIIKEASKE  162 (174)
Q Consensus       124 aN~~-~i~aL~~~~~g~-~~s-----------------~~~~~f~------HNd~~~Le~~L~~  162 (174)
                      .-+. ++.+++.  +|. .+.                 ++++.++      .-|+++|++.+++
T Consensus       102 ~al~~~~~~~~~--~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  163 (374)
T PRK02610        102 ELIRSLLIATCL--GGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQ  163 (374)
T ss_pred             HHHHHHHHHHcC--CCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHh
Confidence            6553 3444432  221 221                 2344443      3468899988875

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=81.49  E-value=6.7  Score=33.64  Aligned_cols=38  Identities=8%  Similarity=0.024  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHHhCCCc----EEEecchhHHHHHHHHHhcc
Q psy16850         97 LFHEKLEEDVARLHQKEA----GLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~----al~f~sGy~aN~~~i~aL~~  134 (174)
                      ..++++++.|++++|.+.    .+++++|..++..++.+|..
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~   78 (368)
T PRK13479         37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP   78 (368)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC
Confidence            689999999999999853    45778999999999999875

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=81.35  E-value=8.1  Score=32.85  Aligned_cols=75  Identities=13%  Similarity=0.102  Sum_probs=46.6

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchh-HHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCY-VANDST  128 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy-~aN~~~  128 (174)
                      ++.+|+|++|+- .+...|.+++++.+++... ..      .+... -..+|.+.||++++.+. -|++++|- .+-..+
T Consensus        23 ~~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~-~~------~y~~~-~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~   93 (353)
T PRK05387         23 LAKLIKLNTNEN-PYPPSPKVLEAIRAALGDD-LR------LYPDP-NADALRQAIAAYYGLDPEQVFVGNGSDEVLAHA   93 (353)
T ss_pred             ccceeeccCCCC-CCCCCHHHHHHHHHHhhhh-hh------cCCCC-cHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHH
Confidence            356899998763 3555788888888876531 11      11111 23689999999998533 35555554 444555


Q ss_pred             HHHhcc
Q psy16850        129 LFTLGK  134 (174)
Q Consensus       129 i~aL~~  134 (174)
                      +.+++.
T Consensus        94 ~~~l~~   99 (353)
T PRK05387         94 FLAFFN   99 (353)
T ss_pred             HHHhcC
Confidence            666654

>PLN00175 aminotransferase family protein; Provisional

Probab=80.85  E-value=36  Score=30.13  Aligned_cols=75  Identities=19%  Similarity=0.092  Sum_probs=45.7

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----C----CcEEEecch-h
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----K----EAGLVFTSC-Y  122 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~----e~al~f~sG-y  122 (174)
                      ..+|||+..+ -++...|.+++++.++++. +.      ..++...-..+|.+.||++++    .    +..+++++| .
T Consensus        54 ~~~i~l~~G~-P~~~~~~~~~~~~~~~~~~-~~------~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~  125 (413)
T PLN00175         54 HGAINLGQGF-PNFDGPDFVKEAAIQAIRD-GK------NQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCT  125 (413)
T ss_pred             CCeEecCCCC-CCCCCCHHHHHHHHHHHhc-CC------CCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHH
Confidence            4578888764 4566677888888888764 21      112222235567777777663    2    224555554 6


Q ss_pred             HHHHHHHHHhcc
Q psy16850        123 VANDSTLFTLGK  134 (174)
Q Consensus       123 ~aN~~~i~aL~~  134 (174)
                      .+...++.++++
T Consensus       126 ~al~~~~~~l~~  137 (413)
T PLN00175        126 EAIAATILGLIN  137 (413)
T ss_pred             HHHHHHHHHhCC
Confidence            777677777765

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=80.79  E-value=4.8  Score=34.74  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=39.2

Q ss_pred             CccchHHHHHHHHHcCCCcccccc-c-cCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHHHHh
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRN-I-SGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~-~-~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i~aL  132 (174)
                      .+.++++..+.+..+. |..++.- . .-.....+++++.+|+++|.+.  .++.++|-.++..++.++
T Consensus        12 ~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~   79 (379)
T TIGR03402        12 DPEVLEAMLPYFTEYF-GNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSA   79 (379)
T ss_pred             CHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHH
Confidence            4667777777665432 2211110 0 0014567888899999999763  555667778777777665

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK08912 hypothetical protein; Provisional

Probab=80.56  E-value=37  Score=29.37  Aligned_cols=74  Identities=18%  Similarity=0.056  Sum_probs=42.1

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CC-cEEEecchhH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KE-AGLVFTSCYV  123 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e-~al~f~sGy~  123 (174)
                      ..++|++++ ..+...|.+.+++.+++.. +..      -++...-..+|.+.+|+++    |    .+ ..++.+++..
T Consensus        27 ~~i~l~~g~-p~~~~p~~~~~~~~~~~~~-~~~------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~   98 (387)
T PRK08912         27 GAINLGQGF-PDDPGPEDVRRAAADALLD-GSN------QYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATE   98 (387)
T ss_pred             CeEEccCCC-CCCCCCHHHHHHHHHHHhc-CCC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHH
Confidence            568888765 3344567788877776542 110      1111112356667777665    3    22 3455555567


Q ss_pred             HHHHHHHHhcc
Q psy16850        124 ANDSTLFTLGK  134 (174)
Q Consensus       124 aN~~~i~aL~~  134 (174)
                      +...++.++++
T Consensus        99 al~~~~~~~~~  109 (387)
T PRK08912         99 ALAAALLALVE  109 (387)
T ss_pred             HHHHHHHHhcC
Confidence            76677777765

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=80.55  E-value=6  Score=39.83  Aligned_cols=72  Identities=7%  Similarity=0.008  Sum_probs=48.5

Q ss_pred             cccCCchHHHHHHHHHHHHhCCCcEEEecchhH-----HHHHHHHHhcccCCCC----eeE-----------------EE
Q psy16850         91 NISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV-----ANDSTLFTLGKMIPYF----TEL-----------------IY  144 (174)
Q Consensus        91 ~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~-----aN~~~i~aL~~~~~g~----~~s-----------------~~  144 (174)
                      .+.|...+..++++.||+++|.+ .++|+.+-.     |+..+|.++.+. +|.    ...                 ++
T Consensus       562 ~~~g~~~~~~~~r~~la~i~g~~-~v~f~pnaga~ge~a~~~vi~~~~~~-~Gd~~r~~vli~~~aH~sn~a~a~~~G~~  639 (993)
T PLN02414        562 QAQGYQEMFEDLGDLLCEITGFD-SFSLQPNAGAAGEYAGLMVIRAYHLS-RGDHHRNVCIIPVSAHGTNPASAAMCGMK  639 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC-eEEEcCCCcHHHHHHHHHHHHHHHhc-cCCCCCCEEEeCCCcCccCHHHHHHCCCE
Confidence            34688899999999999999995 555544333     677777777542 132    111                 24


Q ss_pred             EEEecCC-----CHHHHHHHHHHhc
Q psy16850        145 FYRFLAN-----TTDIIKEASKELQ  164 (174)
Q Consensus       145 ~~~f~HN-----d~~~Le~~L~~~~  164 (174)
                      ++..+-+     |+++|++++.+..
T Consensus       640 vv~v~~d~~G~vDle~L~~~i~~~~  664 (993)
T PLN02414        640 IVVVGTDAKGNINIEELRKAAEAHK  664 (993)
T ss_pred             EEEeccCCCCCcCHHHHHHHHhccC
Confidence            5555543     8999999998543

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=80.55  E-value=8  Score=38.12  Aligned_cols=79  Identities=13%  Similarity=-0.008  Sum_probs=59.4

Q ss_pred             cCCe----eEEEeccC-cccCCC--CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEe
Q psy16850         49 DSEK----EVTVYCSN-DYLGMS--CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVF  118 (174)
Q Consensus        49 ~~g~----~~inf~Sn-dYLGL~--~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f  118 (174)
                      .+|+    ++|+++|. ...++.  .||+|.+|+.+.+++++.-.. .   .-.++.-.+|-++|++..+   .+.+.+.
T Consensus       358 ~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~-~---~~~hepa~~LAe~L~~~~~~~~l~rVffs  433 (817)
T PLN02974        358 TNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMF-P---ENVHEPALRAAELLLGGPGKGWASRVFFS  433 (817)
T ss_pred             CCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCcccc-C---ccCCHHHHHHHHHHHhccCCCCCCEEEEC
Confidence            4565    89998764 456666  499999999999999874321 1   1146788889999998775   2578899


Q ss_pred             cchhHHHHHHHHH
Q psy16850        119 TSCYVANDSTLFT  131 (174)
Q Consensus       119 ~sGy~aN~~~i~a  131 (174)
                      +||-.||=..|..
T Consensus       434 ~sGSeAvE~AlKm  446 (817)
T PLN02974        434 DNGSTAIEVALKM  446 (817)
T ss_pred             CchHHHHHHHHHH
Confidence            9999999887763

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=80.26  E-value=14  Score=31.63  Aligned_cols=72  Identities=13%  Similarity=0.038  Sum_probs=46.9

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDST  128 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~~  128 (174)
                      .+..+|+|++|. -.+...|.+++++.+++...+.+.-      . ..-..+|.+.||+|+|.+ +-|++++|-..-+..
T Consensus        16 ~~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y------~-~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~   87 (337)
T PRK03967         16 EGNYRIWLDKNE-NPFDLPEELKEEIFEELKRVPFNRY------P-HITSDPLREAIAEFYGLDAENIAVGNGSDELISY   87 (337)
T ss_pred             CCCceEEecCCC-CCCCCCHHHHHHHHHHhhcCccccC------C-CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHH
Confidence            345678998876 2345668899999888765332211      1 112578999999999843 467788886654433


Q ss_pred             H
Q psy16850        129 L  129 (174)
Q Consensus       129 i  129 (174)
                      +
T Consensus        88 ~   88 (337)
T PRK03967         88 L   88 (337)
T ss_pred             H
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
2bwn_A	401	5-Aminolevulinate Synthase From Rhodobacter Capsula		2e-28
2bwo_B	401	5-Aminolevulinate Synthase From Rhodobacter Capsula		2e-28
3tqx_A	399	Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A		7e-11
3a2b_A	398	Crystal Structure Of Serine Palmitoyltransferase Fr		2e-09
2jg2_A	422	High Resolution Structure Of Spt With Plp Internal		4e-08
2w8j_A	427	Spt With Plp-Ser Length = 427		4e-08
2jgt_A	422	Low Resolution Structure Of Spt Length = 422		4e-08
2w8v_A	427	Spt With Plp, N100w Length = 427		4e-08
2w8t_A	427	Spt With Plp, N100c Length = 427		7e-08
1fc4_A	401	2-Amino-3-Ketobutyrate Coa Ligase Length = 401		9e-08
2w8w_A	427	N100y Spt With Plp-Ser Length = 427		9e-08
2w8u_A	427	Spt With Plp, N100y Length = 427		9e-08
2x8u_A	412	Sphingomonas Wittichii Serine Palmitoyltransferase		1e-06
1bs0_A	384	Plp-dependent Acyl-coa Synthase Length = 384		1e-05
1dj9_A	384	Crystal Structure Of 8-Amino-7-Oxonanoate Synthase		1e-05

>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus Length = 401

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 11  YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFP-AAYEYTDSEKE-VTVYCSNDYLGMSCH 68
           Y     + I K   +  YR F  + R    FP A +   D  K+ +TV+C NDYLGM  H
Sbjct: 3   YNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQH 62
Query: 69  PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
           P V +A+ EALE  G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+T
Sbjct: 63  PVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDAT 122
Query: 129 LFTLGKMIP 137
           L TL  + P
Sbjct: 123 LSTLRVLFP 131

>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In Complex With Succinyl-Coa Length = 401

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 11  YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFP-AAYEYTDSEKE-VTVYCSNDYLGMSCH 68
           Y     + I K   +  YR F  + R    FP A +   D  K+ +TV+C NDYLGM  H
Sbjct: 3   YNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQH 62
Query: 69  PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
           P V +A+ EALE  G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+T
Sbjct: 63  PVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDAT 122
Query: 129 LFTLGKMIP 137
           L TL  + P
Sbjct: 123 LSTLRVLFP 131

>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase (Kbl) From Coxiella Burnetii Length = 399

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 33  KVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNI 92
           K  R+ T+ P   E    EKEV  +C+N+YLG++ HP +    +  +E++G G    R I
Sbjct: 25  KSERIITS-PQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGXASVRFI 83
Query: 93  SGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL 132
            G    H++LE+D++     +  ++++SC+ AN     TL
Sbjct: 84  CGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETL 123

>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From Sphingobacterium Multivorum With Substrate L-Serine Length = 398

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           + V ++ SN YLG++   ++  A ++ALEK+GTG  G+R ++G    H +LEE ++    
Sbjct: 43  RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG 102
Query: 112 KEAGLVFTSCYVANDSTLFTL 132
           KEA ++F++ + +N   L  L
Sbjct: 103 KEAAILFSTGFQSNLGPLSCL 123

>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal Aldimine Length = 422

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K+  +  + +Y+GM+  P V +A +EALEKFG+G  G+R ++G    H ++E+ +   + 
Sbjct: 65  KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYG 124
Query: 112 KEAGLVFTSCYVANDSTLFTL 132
               +VF++ Y+AN   + TL
Sbjct: 125 TTGAIVFSTGYMANLGIISTL 145

>pdb|2W8J|A Chain A, Spt With Plp-Ser Length = 427

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K+  +  + +Y+GM+  P V +A +EALEKFG+G  G+R ++G    H ++E+ +   + 
Sbjct: 64  KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 112 KEAGLVFTSCYVANDSTLFTL 132
               +VF++ Y+AN   + TL
Sbjct: 124 TTGAIVFSTGYMANLGIISTL 144

>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt Length = 422

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K+  +  + +Y+GM+  P V +A +EALEKFG+G  G+R ++G    H ++E+ +   + 
Sbjct: 65  KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYG 124
Query: 112 KEAGLVFTSCYVANDSTLFTL 132
               +VF++ Y+AN   + TL
Sbjct: 125 TTGAIVFSTGYMANLGIISTL 145

>pdb|2W8V|A Chain A, Spt With Plp, N100w Length = 427

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K+  +  + +Y+GM+  P V +A +EALEKFG+G  G+R ++G    H ++E+ +   + 
Sbjct: 64  KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTWGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 112 KEAGLVFTSCYVANDSTLFTL 132
               +VF++ Y+AN   + TL
Sbjct: 124 TTGAIVFSTGYMANLGIISTL 144

>pdb|2W8T|A Chain A, Spt With Plp, N100c Length = 427

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K+  +  + +Y+GM+  P V +A +EALEKFG+G  G+R ++G    H ++E+ +   + 
Sbjct: 64  KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 112 KEAGLVFTSCYVANDSTLFTL 132
               +VF++ Y+AN   + TL
Sbjct: 124 TTGAIVFSTGYMANLGIISTL 144

>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase Length = 401

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 54  VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE 113
           V  +C+N+YLG++ HP + +A +   +  G G    R I G    H++LE+ +A     E
Sbjct: 47  VINFCANNYLGLANHPDLIAAAKAGXDSHGFGXASVRFICGTQDSHKELEQKLAAFLGXE 106
Query: 114 AGLVFTSCYVANDSTLFTL 132
             ++++SC+ AN     TL
Sbjct: 107 DAILYSSCFDANGGLFETL 125

>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser Length = 427

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K+  +  + +Y+GM+  P V +A +EALEKFG+G  G+R ++G    H ++E+ +   + 
Sbjct: 64  KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 112 KEAGLVFTSCYVANDSTLFTL 132
               +VF++ Y+AN   + TL
Sbjct: 124 TTGAIVFSTGYMANLGIISTL 144

>pdb|2W8U|A Chain A, Spt With Plp, N100y Length = 427

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 52  KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ 111
           K+  +  + +Y+GM+  P V +A +EALEKFG+G  G+R ++G    H ++E+ +   + 
Sbjct: 64  KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 112 KEAGLVFTSCYVANDSTLFTL 132
               +VF++ Y+AN   + TL
Sbjct: 124 TTGAIVFSTGYMANLGIISTL 144

>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase Length = 412

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 61  DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTS 120
           +Y+GM+  P V +A ++AL++FG+G  G+R ++G    H+  E+ +   +  E  +VF++
Sbjct: 53  NYMGMTFDPDVIAAGKQALDEFGSGTTGSRVLNGTYQGHKACEDALKEFYGTEHAIVFST 112
Query: 121 CYVANDSTLFTL 132
            Y AN   + TL
Sbjct: 113 GYQANLGMISTL 124

>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase Length = 384

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 57  YCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGL 116
           + SNDYLG+S HP++  A ++  E+FG G+GG+ ++SG S+ H+ LEE++A        L
Sbjct: 44  FSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRAL 103
Query: 117 VFTSCYVANDSTLFTL 132
           +F S + AN + +  +
Sbjct: 104 LFISGFAANQAVIAAM 119

>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or 7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or Kapa). The Enzyme Of Biotin Biosynthetic Pathway. Length = 384

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 57  YCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGL 116
           + SNDYLG+S HP++  A ++  E+FG G+GG+ ++SG S+ H+ LEE++A        L
Sbjct: 44  FSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRAL 103
Query: 117 VFTSCYVANDSTLFTL 132
           +F S + AN + +  +
Sbjct: 104 LFISGFAANQAVIAAM 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	5e-58
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	3e-41
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	7e-40
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	7e-37
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	2e-35
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	8e-33
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	3e-29

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401

 Score =  185 bits (471), Expect = 5e-58
 Identities = 60/129 (46%), Positives = 79/129 (61%), Gaps = 2/129 (1%)

Query: 11  YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAA--YEYTDSEKEVTVYCSNDYLGMSCH 68
           Y     + I K   +  YR F  + R    FP A        ++++TV+C NDYLGM  H
Sbjct: 3   YNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQH 62

Query: 69  PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
           P V +A+ EALE  G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+T
Sbjct: 63  PVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDAT 122

Query: 129 LFTLGKMIP 137
           L TL  + P
Sbjct: 123 LSTLRVLFP 131

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409

 Score =  141 bits (358), Expect = 3e-41
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 17  EQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVR 76
              ++ K DH    +  +N+   +         +  +  +  SNDYL ++ HP +K+ + 
Sbjct: 27  PDFIQNKIDHYIENYFDINKNGKHLVLG---KQASPDDIILQSNDYLALANHPLIKARLA 83

Query: 77  EALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK 134
           ++L +       + +   N      +E+ +A+    +  L+  S + AN   L T+ +
Sbjct: 84  KSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQ 141

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427

 Score =  138 bits (350), Expect = 7e-40
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 3   TTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDY 62
              R+     D    +  K         F  V     +   A       K+  +  + +Y
Sbjct: 18  APERDLLSKFDGLIAERQKLLDSGVTDPFAIVMEQVKSPTEA---VIRGKDTILLGTYNY 74

Query: 63  LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCY 122
           +GM+  P V +A +EALEKFG+G  G+R ++G    H ++E+ +   +     +VF++ Y
Sbjct: 75  MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGY 134

Query: 123 VANDSTLFTL 132
           +AN   + TL
Sbjct: 135 MANLGIISTL 144

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399

 Score =  130 bits (328), Expect = 7e-37
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 11  YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPK 70
                +++I   K+   Y+  + +       P   E    EKEV  +C+N+YLG++ HP 
Sbjct: 7   ILSQLNKEIEGLKKAGLYKSERIITS-----PQNAEIKVGEKEVLNFCANNYLGLADHPA 61

Query: 71  VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF 130
           +    +  +E++G G    R I G    H++LE+D++     +  ++++SC+ AN     
Sbjct: 62  LIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFE 121

Query: 131 TL 132
           TL
Sbjct: 122 TL 123

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384

 Score =  126 bits (318), Expect = 2e-35
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 11  YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPK 70
           +++  +  +  ++   + R    V +      A       +++   + SNDYLG+S HP+
Sbjct: 3   WQEKINAALDARRAADALRRRYPVAQ-----GAGRWLVADDRQYLNFSSNDYLGLSHHPQ 57

Query: 71  VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF 130
           +  A ++  E+FG G+GG+ ++SG S+ H+ LEE++A        L+F S + AN + + 
Sbjct: 58  IIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIA 117

Query: 131 TL 132
            +
Sbjct: 118 AM 119

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401

 Score =  119 bits (301), Expect = 8e-33
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 4   TMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYL 63
            MR  F         +   + +  ++      R+ T+   A         V  +C+N+YL
Sbjct: 3   HMRGEF--YQQLTNDLETARAEGLFKEE----RIITSAQQADITVADGSHVINFCANNYL 56

Query: 64  GMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYV 123
           G++ HP + +A +  ++  G G    R I G    H++LE+ +A     E  ++++SC+ 
Sbjct: 57  GLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFD 116

Query: 124 ANDSTLFTL 132
           AN     TL
Sbjct: 117 ANGGLFETL 125

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398

 Score =  109 bits (276), Expect = 3e-29
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 17  EQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVR 76
           + + + K    Y  F+ +           E     + V ++ SN YLG++   ++  A +
Sbjct: 13  KIVEELKAKGLYAYFRPIQS-----KQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQ 67

Query: 77  EALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL 132
           +ALEK+GTG  G+R ++G    H +LEE ++    KEA ++F++ + +N   L  L
Sbjct: 68  DALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCL 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.83
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.77
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.74
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.71
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.65
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.64
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.46
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.09
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.08
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.04
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.01
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	98.99
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	98.97
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	98.96
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	98.96
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	98.91
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	98.9
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	98.9
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	98.9
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	98.88
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	98.33
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	98.83
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	98.81
3hmu_A	472	Aminotransferase, class III; structural genomics,	98.79
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.74
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	98.73
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	98.71
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	98.71
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.71
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	98.66
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	98.65
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.65
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	98.6
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	98.55
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	98.54
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	98.51
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	98.51
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.5
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	98.48
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	98.46
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	98.4
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	98.39
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	98.38
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	98.38
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	98.35
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	98.32
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	98.3
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	98.3
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	98.29
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	98.28
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	98.25
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	98.25
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	98.24
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	98.23
1svv_A	359	Threonine aldolase; structural genomics, structura	98.22
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	98.21
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	98.19
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	98.17
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	98.16
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	98.16
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	98.16
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	98.15
3ele_A	398	Amino transferase; RER070207001803, structural gen	98.09
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	98.07
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	98.02
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	98.01
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	98.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	97.97
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	97.94
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	97.94
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	97.93
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	97.93
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	97.89
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	97.88
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	97.88
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	97.88
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	97.87
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	97.86
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	97.85
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	97.85
3rq1_A	418	Aminotransferase class I and II; structural genomi	97.85
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	97.85
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	97.84
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	97.84
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	97.84
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	97.82
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	97.81
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	97.8
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.8
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	97.8
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	97.79
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	97.78
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	97.76
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	97.74
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	97.74
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	97.72
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	97.72
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	97.7
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	97.7
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	97.7
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	97.69
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	97.68
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	97.68
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	97.67
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	97.66
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	97.64
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	97.63
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	97.63
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	97.6
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	97.6
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	97.6
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	97.59
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	97.58
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	97.58
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	97.58
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	97.58
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	97.56
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	97.54
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	97.53
1o69_A	394	Aminotransferase; structural genomics, unknown fun	97.53
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	97.52
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	97.5
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	97.49
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	97.49
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	97.47
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	96.59
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	97.45
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	97.44
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	97.43
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	97.42
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	97.42
1vp4_A	425	Aminotransferase, putative; structural genomics, j	97.41
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	97.39
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	97.38
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	97.35
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	97.34
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	97.32
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	97.31
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	97.3
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	97.3
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	97.28
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	97.28
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	97.27
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	97.23
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	97.22
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	97.2
2fnu_A	375	Aminotransferase; protein-product complex, structu	97.17
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	97.16
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	97.15
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	97.11
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	97.11
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	97.1
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	97.08
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	97.07
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	97.06
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	97.04
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	97.04
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	97.03
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	97.03
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	97.02
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	96.96
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	96.93
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	96.91
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	96.9
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	96.9
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	96.87
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	96.79
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	96.78
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	96.73
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	96.65
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	96.63
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	96.63
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	96.43
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	96.39
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	96.38
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	96.3
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	96.26
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	96.25
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	96.25
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	96.23
3pj0_A	359	LMO0305 protein; structural genomics, joint center	96.22
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	96.18
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	96.09
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	96.09
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	96.08
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	96.02
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	96.02
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	95.97
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	95.66
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	95.64
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	95.64
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	95.61
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	95.52
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	95.45
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	95.31
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	95.26
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	95.12
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	95.03
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	94.96
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	94.85
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	94.83
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	94.73
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	94.49
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	94.33
1iug_A	352	Putative aspartate aminotransferase; wild type, py	94.21
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	94.17
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	93.88
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	93.4
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	93.19
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	92.71
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	92.46
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	90.55
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	90.19
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	90.06
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	90.04
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	88.7
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	88.45
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	88.25
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	86.41
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	85.82
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	85.41
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	84.91
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	84.56
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	83.03
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	82.38

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.83  E-value=1.6e-19  Score=156.35  Aligned_cols=146  Identities=23%  Similarity=0.267  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHHHHhC-CCCceeeec-ccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccc
Q psy16850         11 YEDFFHEQIMKKKRDH-SYRVFKKVN-RLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGG   88 (174)
Q Consensus        11 ~~~~~~~~L~~~~~~g-~~r~~~~~~-~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~   88 (174)
                      ....+.+++++++..| .+|.+..++ +..+     .++..+|+++|||++|+||||..+|++++++.+++++||.+.++
T Consensus        26 ~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~g-----~~~~~~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~  100 (427)
T 2w8t_A           26 KFDGLIAERQKLLDSGVTDPFAIVMEQVKSP-----TEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCG  100 (427)
T ss_dssp             GGHHHHHHHHHHHHTTCCCTTCCCCSEEEET-----TEEEETTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCS
T ss_pred             HHHHHHHHHHHHHHcCCcceeeeeccccCCC-----ceEeeCCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcc
Confidence            3445677888999999 888877665 4432     34455999999999999999999999999999999999999999


Q ss_pred             cccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC
Q psy16850         89 TRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN  151 (174)
Q Consensus        89 Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN  151 (174)
                      +|...|....+.+||+.||+++|.+++++++||+.||..++.++.+  +|..+.                 +.++.|+|+
T Consensus       101 ~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~--~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~~  178 (427)
T 2w8t_A          101 SRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAG--KGEYVILDADSHASIYDGCQQGNAEIVRFRHN  178 (427)
T ss_dssp             CTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC--TTCEEEEETTCCHHHHHHHHHSCSEEEEECTT
T ss_pred             cccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcC--CCCEEEECCcccHHHHHHHHHcCCeeEEeCCC
Confidence            9999999999999999999999999999999999999999999976  343322                 478899999


Q ss_pred             CHHHHHHHHHHh
Q psy16850        152 TTDIIKEASKEL  163 (174)
Q Consensus       152 d~~~Le~~L~~~  163 (174)
                      |+++||++|++.
T Consensus       179 d~~~le~~l~~~  190 (427)
T 2w8t_A          179 SVEDLDKRLGRL  190 (427)
T ss_dssp             CHHHHHHHHHTS
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.77  E-value=1.1e-17  Score=142.19  Aligned_cols=156  Identities=40%  Similarity=0.604  Sum_probs=127.2

Q ss_pred             CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceee--ecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCc
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEY--TDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGA   86 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~--~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs   86 (174)
                      |++.+.+.+.|++++++|+||.+..+....+.++.....  ..+|+++++|++|+|+|+..+|++++++.+++++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~   80 (401)
T 2bwn_A            1 MDYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGS   80 (401)
T ss_dssp             -CHHHHHHHHHHHHHHTTCCCCCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCC
T ss_pred             CChHHHHHHHHHHHHhcCCceehhhhhcccccccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCC
Confidence            567778888899999999999988776555444421100  016789999999999999999999999999999999887


Q ss_pred             cccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEec
Q psy16850         87 GGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFL  149 (174)
Q Consensus        87 ~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~  149 (174)
                      ++++..+|....+.+|+++||+|+|.+++++|+||..+|..++.+++...+|..+.                 +.++.++
T Consensus        81 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~  160 (401)
T 2bwn_A           81 GGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFR  160 (401)
T ss_dssp             CSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEEC
T ss_pred             CCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEc
Confidence            78888888889999999999999999999999999999999998875322444332                 3678899


Q ss_pred             CCCHHHHHHHHHHhc
Q psy16850        150 ANTTDIIKEASKELQ  164 (174)
Q Consensus       150 HNd~~~Le~~L~~~~  164 (174)
                      ++|+++||+++++..
T Consensus       161 ~~d~~~le~~l~~~~  175 (401)
T 2bwn_A          161 HNDVAHLRELIAADD  175 (401)
T ss_dssp             TTCHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHhhc
Confidence            999999999998654

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.74  E-value=8.1e-17  Score=135.75  Aligned_cols=146  Identities=25%  Similarity=0.432  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcccccc
Q psy16850         12 EDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRN   91 (174)
Q Consensus        12 ~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~   91 (174)
                      .+.+.+.++++++.|.+|....+++..     +.++..+|+++|||++|+|+|+..+|++++++.+++++++.+.++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~v~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~   82 (399)
T 3tqx_A            8 LSQLNKEIEGLKKAGLYKSERIITSPQ-----NAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRF   82 (399)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCCCBCSCS-----SSEEEETTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCC
T ss_pred             HHHHHHHHHHHHHcCCccccccccCCC-----CceEeeCCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCc
Confidence            455778899999999999887776543     334556999999999999999999999999999999999999999999


Q ss_pred             ccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCHH
Q psy16850         92 ISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTTD  154 (174)
Q Consensus        92 ~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~  154 (174)
                      ..|....+.+|++.||+++|.+++++++||..||..++.++.+  +|..+.                 +.++.++++|++
T Consensus        83 ~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~  160 (399)
T 3tqx_A           83 ICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLG--PEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMG  160 (399)
T ss_dssp             CCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCC--TTCEEEEETTCCHHHHHHHHSCCSEEEEECTTCTT
T ss_pred             cccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcC--CCCEEEECCcccHHHHHHHHHcCCceeEeCCCCHH
Confidence            9999999999999999999999999999999999999999976  444332                 378899999999


Q ss_pred             HHHHHHHHhc
Q psy16850        155 IIKEASKELQ  164 (174)
Q Consensus       155 ~Le~~L~~~~  164 (174)
                      +||+.+++..
T Consensus       161 ~l~~~l~~~~  170 (399)
T 3tqx_A          161 DLEAKLKEAD  170 (399)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            9999999864

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.71  E-value=4.7e-17  Score=139.16  Aligned_cols=115  Identities=19%  Similarity=0.204  Sum_probs=104.4

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHH
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST  128 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~  128 (174)
                      .+|+++|||+|||||||..+|++++++.+++++||.+.++++...|+...+.+|++.||+++|.+.+++++||..||..+
T Consensus        56 ~~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~  135 (409)
T 3kki_A           56 QASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGL  135 (409)
T ss_dssp             CCCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHH
T ss_pred             CCCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCeeE-----------------EEEEEecCCCHHHHHHHHHHhcc
Q psy16850        129 LFTLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       129 i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                      +.++.+  +|..+.                 +.++.|+|+|+++||+.+++...
T Consensus       136 l~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~  187 (409)
T 3kki_A          136 LQTICQ--PNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGP  187 (409)
T ss_dssp             HHHHCC--TTCEEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHHCS
T ss_pred             HHHhcC--CCCEEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhcCC
Confidence            999976  444332                 47789999999999999987544

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.65  E-value=3.2e-15  Score=126.08  Aligned_cols=148  Identities=24%  Similarity=0.365  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccc
Q psy16850          9 FPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGG   88 (174)
Q Consensus         9 ~~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~   88 (174)
                      |+|.+.+.+.+.++++.+.++....+.+..     +.++..+|+.+|||++|+|+|+..+|++++++.++++++|.+.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~   75 (384)
T 1bs0_A            1 MSWQEKINAALDARRAADALRRRYPVAQGA-----GRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGG   75 (384)
T ss_dssp             -CHHHHHHHHHHHCCGGGCCCCCCCCSBCS-----SSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCS
T ss_pred             CChHHHHHHHHHHHHhcCCccccccccCCC-----CceEEECCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence            677566788888888999888766655543     334457899999999999999988999999999999999987778


Q ss_pred             cccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC
Q psy16850         89 TRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN  151 (174)
Q Consensus        89 Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN  151 (174)
                      ++...|....+.+|++.||+++|.+++++++||..++..++.++.+  +|..+.                 +.++.++++
T Consensus        76 ~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~  153 (384)
T 1bs0_A           76 SGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMA--KEDRIAADRLSHASLLEAASLSPSQLRRFAHN  153 (384)
T ss_dssp             BTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHTSSSEEEEECTT
T ss_pred             cCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCC--CCcEEEEcccccHHHHHHHHHcCCCEEEeCCC
Confidence            8888888999999999999999999999999999999999999876  444332                 367889999


Q ss_pred             CHHHHHHHHHHh
Q psy16850        152 TTDIIKEASKEL  163 (174)
Q Consensus       152 d~~~Le~~L~~~  163 (174)
                      |+++||+.+++.
T Consensus       154 d~~~l~~~l~~~  165 (384)
T 1bs0_A          154 DVTHLARLLASP  165 (384)
T ss_dssp             CHHHHHHHHHSC
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.64  E-value=7.6e-15  Score=124.43  Aligned_cols=145  Identities=21%  Similarity=0.370  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeec-CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccc
Q psy16850         12 EDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTD-SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTR   90 (174)
Q Consensus        12 ~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~-~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr   90 (174)
                      .+++.+++...+++|.++....+.+..+     .++.. +|+.+|||++|+++|+..+|++++++.+++++||.+.++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~   83 (401)
T 1fc4_A            9 YQQLTNDLETARAEGLFKEERIITSAQQ-----ADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVR   83 (401)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCBCSCSS-----SEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCH
T ss_pred             HHHHHHHHHHHHhcCCeeeeeeeccCCC-----ceEEeeCCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCC
Confidence            3567778888999999998777665432     33443 78999999999999988899999999999999998888888


Q ss_pred             cccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCH
Q psy16850         91 NISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTT  153 (174)
Q Consensus        91 ~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~  153 (174)
                      ...|....+.+|++.||+++|.++++++++|..++..++.++.+  +|..+.                 +.++.++++|+
T Consensus        84 ~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~  161 (401)
T 1fc4_A           84 FICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYANNDM  161 (401)
T ss_dssp             HHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCC--TTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCH
T ss_pred             cccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcC--CCCEEEEcchhHHHHHHHHHHcCCceEEECCCCH
Confidence            88888899999999999999999999999999999999999875  343322                 36788999999


Q ss_pred             HHHHHHHHHh
Q psy16850        154 DIIKEASKEL  163 (174)
Q Consensus       154 ~~Le~~L~~~  163 (174)
                      ++||+.+++.
T Consensus       162 ~~l~~~l~~~  171 (401)
T 1fc4_A          162 QELEARLKEA  171 (401)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.46  E-value=1.8e-12  Score=109.83  Aligned_cols=139  Identities=25%  Similarity=0.373  Sum_probs=118.5

Q ss_pred             HHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCch
Q psy16850         18 QIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSL   97 (174)
Q Consensus        18 ~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~   97 (174)
                      .+..++++|.+|....+.+..     +.++..+|+.+|+|++|+++|+..+|++++++.+++++++.+.++++...|..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~   88 (398)
T 3a2b_A           14 IVEELKAKGLYAYFRPIQSKQ-----DTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLD   88 (398)
T ss_dssp             HHHHHHHTTCCCSSCCBCSCS-----SSEEEETTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCH
T ss_pred             HHHHHHhcCcccceeeecCCC-----CceEEECCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcH
Confidence            367788999999877766543     334457899999999999999988999999999999988877777788889999


Q ss_pred             HHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCHHHHHHHH
Q psy16850         98 FHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEAS  160 (174)
Q Consensus        98 ~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L  160 (174)
                      +.+++++.+++++|.+.++++++|..|+..++.++.+  +|..+.                 +.++.++++|+++||+.+
T Consensus        89 ~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~--~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l  166 (398)
T 3a2b_A           89 IHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMG--RNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKL  166 (398)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSC--TTCEEEEETTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEECCccCHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999865  454332                 367889999999999999


Q ss_pred             HHh
Q psy16850        161 KEL  163 (174)
Q Consensus       161 ~~~  163 (174)
                      ++.
T Consensus       167 ~~~  169 (398)
T 3a2b_A          167 SRL  169 (398)
T ss_dssp             HTS
T ss_pred             Hhh
Confidence            875

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.09  E-value=3.8e-10  Score=95.59  Aligned_cols=108  Identities=13%  Similarity=0.031  Sum_probs=85.7

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|||+||   ++||. .+|+|++++.+++++++.++.     .+..+.+++|++.|++++|.+.++++++|+.|
T Consensus        32 d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea  105 (395)
T 3nx3_A           32 DDKAKKYLDFSSGIGVCALGY-NHAKFNAKIKAQVDKLLHTSN-----LYYNENIAAAAKNLAKASALERVFFTNSGTES  105 (395)
T ss_dssp             ETTCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHTTCSCCCT-----TSBCHHHHHHHHHHHHHHTCSEEEEESSHHHH
T ss_pred             ECCCCEEEECCCcHHhccCCC-CCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHH
Confidence            3689999999999   66787 699999999999987654431     13578999999999999999999999999999


Q ss_pred             HHHHHHHhccc-----CCCCee------------------------------EEEEEEecCCCHHHHHHHHH
Q psy16850        125 NDSTLFTLGKM-----IPYFTE------------------------------LIYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       125 N~~~i~aL~~~-----~~g~~~------------------------------s~~~~~f~HNd~~~Le~~L~  161 (174)
                      |..+|.++...     .++.+.                              ...+..++|||+++||+.++
T Consensus       106 ~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  177 (395)
T 3nx3_A          106 IEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVN  177 (395)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTCC
T ss_pred             HHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhcc
Confidence            99999876421     011111                              13567889999999999885

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.08  E-value=6.5e-10  Score=93.77  Aligned_cols=106  Identities=9%  Similarity=-0.048  Sum_probs=86.2

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-----CcEEEecchhHHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-----EAGLVFTSCYVANDS  127 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-----e~al~f~sGy~aN~~  127 (174)
                      .+|||++|||+++..+|+|++++.+++++.+..  +.....|...+++++++.+++++|.     +.++++++|+.|+..
T Consensus        40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~  117 (407)
T 3nra_A           40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQ--AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL  117 (407)
T ss_dssp             CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHH--HSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred             ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCC--CcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence            399999999999999999999999998864421  1122347789999999999999997     689999999999999


Q ss_pred             HHHHhcccCCCCeeE-----------------EEEEEecCC-----------CHHHHHHHHHH
Q psy16850        128 TLFTLGKMIPYFTEL-----------------IYFYRFLAN-----------TTDIIKEASKE  162 (174)
Q Consensus       128 ~i~aL~~~~~g~~~s-----------------~~~~~f~HN-----------d~~~Le~~L~~  162 (174)
                      ++.++.+  +|.++.                 +.++.++++           |+++|++.|++
T Consensus       118 ~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  178 (407)
T 3nra_A          118 AVAATVA--RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA  178 (407)
T ss_dssp             HHHTTCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT
T ss_pred             HHHHhCC--CCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh
Confidence            9999875  444332                 367788873           89999999987

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.04  E-value=2.3e-10  Score=95.34  Aligned_cols=79  Identities=11%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             EEE-eccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850         54 VTV-YCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        54 ~in-f~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      +++ |++|||||++.||.+.++..+.++.+|  +..++..+|..+.+.+||++||+++|.+.++++++|..||..++.++
T Consensus         5 ~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~--~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~   82 (357)
T 3lws_A            5 LRTSFQQTTGQISGHGKRNVGVLKTAFAAVA--DEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIW   82 (357)
T ss_dssp             HHHHHHTCSEESSBSSCCBHHHHHHHHTTSC--TTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH
T ss_pred             hhhHHHhhcccccCCCCCCHHHHHHHHHHhh--cccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHH
Confidence            444 899999999999999999999998887  34556778888899999999999999999999999999999999888


Q ss_pred             cc
Q psy16850        133 GK  134 (174)
Q Consensus       133 ~~  134 (174)
                      ..
T Consensus        83 ~~   84 (357)
T 3lws_A           83 SD   84 (357)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.01  E-value=3e-09  Score=93.93  Aligned_cols=81  Identities=15%  Similarity=0.053  Sum_probs=70.2

Q ss_pred             ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy  122 (174)
                      ..+|+++|||+||.+   ||.+ ||+|++|+.+.+++++.+++.    .+..+.+.+|+++|++++  +.+.+++++||+
T Consensus        50 d~~G~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~l~~~~~~~~~----~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs  124 (476)
T 3i5t_A           50 TEDGRRLIDGPAGMWCAQVGYG-RREIVDAMAHQAMVLPYASPW----YMATSPAARLAEKIATLTPGDLNRIFFTTGGS  124 (476)
T ss_dssp             ETTCCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCCCCCTT----TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHH
T ss_pred             ECCCCEEEECCCchhhccCCCC-CHHHHHHHHHHHHhccCcccC----ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchH
Confidence            368999999999955   8885 999999999999987655432    567899999999999999  578999999999


Q ss_pred             HHHHHHHHHhc
Q psy16850        123 VANDSTLFTLG  133 (174)
Q Consensus       123 ~aN~~~i~aL~  133 (174)
                      .||.++|.++.
T Consensus       125 eA~~~Aik~a~  135 (476)
T 3i5t_A          125 TAVDSALRFSE  135 (476)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.00  E-value=1.2e-09  Score=92.26  Aligned_cols=107  Identities=17%  Similarity=0.080  Sum_probs=83.9

Q ss_pred             cCCeeEEEeccCcccCCC---CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         49 DSEKEVTVYCSNDYLGMS---CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~---~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      .+|+++|||++| |..+.   .+|+|++++.+.+++++.++.   .  +..+.+.+|++.||+++|.+.++++++|..||
T Consensus        33 ~~g~~~lD~~~~-~~~~~lG~~~p~v~~a~~~~~~~~~~~~~---~--~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~  106 (392)
T 3ruy_A           33 PEGNRYMDLLSA-YSAVNQGHRHPKIINALIDQANRVTLTSR---A--FHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAV  106 (392)
T ss_dssp             TTCCEEEESSHH-HHTCTTCBTCHHHHHHHHHHHTTCSCCCT---T--SEETTHHHHHHHHHHHHTCSEEEEESSHHHHH
T ss_pred             CCCCEEEEcCCC-hhhhccCCCCHHHHHHHHHHHHhcccccc---c--cCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence            678999999998 74433   599999999999988765432   1  45788999999999999999999999999999


Q ss_pred             HHHHHHhccc--------CCCCeeE------------------------------EEEEEecCCCHHHHHHHHH
Q psy16850        126 DSTLFTLGKM--------IPYFTEL------------------------------IYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       126 ~~~i~aL~~~--------~~g~~~s------------------------------~~~~~f~HNd~~~Le~~L~  161 (174)
                      ..++.++...        -.+.+..                              ..+..++|||+++||+.++
T Consensus       107 ~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  180 (392)
T 3ruy_A          107 ETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAIT  180 (392)
T ss_dssp             HHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCC
T ss_pred             HHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHhc
Confidence            9999876421        0011111                              1267889999999999987

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.00  E-value=1.8e-09  Score=93.79  Aligned_cols=109  Identities=16%  Similarity=0.141  Sum_probs=85.6

Q ss_pred             ecCCeeEEEecc-CcccCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         48 TDSEKEVTVYCS-NDYLGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        48 ~~~g~~~inf~S-ndYLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      ..+|+++|||++ ++++.|. .+|+|++|+.+.+++++..   ++.  ...+.+.+|+++||+++|.+.+++++||..||
T Consensus        61 d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~---~~~--~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~  135 (433)
T 1z7d_A           61 DVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC---SRA--FFSVPLGICERYLTNLLGYDKVLMMNTGAEAN  135 (433)
T ss_dssp             ETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCC---CTT--SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHH
T ss_pred             ECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCc---cCC--cCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHH
Confidence            468999999999 7799999 7999999999999876532   232  25678999999999999999999999999999


Q ss_pred             HHHHHHhc-----------c-c-----CCCCe--------eE-------------EEEEEecCCCHHHHHHHHH
Q psy16850        126 DSTLFTLG-----------K-M-----IPYFT--------EL-------------IYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       126 ~~~i~aL~-----------~-~-----~~g~~--------~s-------------~~~~~f~HNd~~~Le~~L~  161 (174)
                      ..+|.++.           + .     .+.-+        ++             ..+..+++||+++||+.|+
T Consensus       136 ~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~  209 (433)
T 1z7d_A          136 ETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELK  209 (433)
T ss_dssp             HHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhC
Confidence            99998753           2 0     01111        10             2456788999999999995

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=98.99  E-value=3.8e-09  Score=90.92  Aligned_cols=109  Identities=17%  Similarity=0.044  Sum_probs=83.9

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~  123 (174)
                      ..+|+++|||+||.   +||. .||+|++|+.+++++...       ..+....+.+|+++|++++ +.+.+++++||..
T Consensus        49 d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~-------~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gse  120 (429)
T 3k28_A           49 DIDGNEYIDYVLSWGPLIHGH-ANDRVVEALKAVAERGTS-------FGAPTEIENKLAKLVIERVPSIEIVRMVNSGTE  120 (429)
T ss_dssp             ETTCCEEEESCGGGTTCTTCB-SCHHHHHHHHHHHHHCSC-------CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHH
T ss_pred             ECCCCEEEECCCChhhcccCC-CCHHHHHHHHHHHhhCcC-------cCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHH
Confidence            46899999999985   4665 599999999999987432       2345688999999999999 6888999999999


Q ss_pred             HHHHHHHHhcc---c------CCCCee--------------------E--------EEEEEecCCCHHHHHHHHHHhc
Q psy16850        124 ANDSTLFTLGK---M------IPYFTE--------------------L--------IYFYRFLANTTDIIKEASKELQ  164 (174)
Q Consensus       124 aN~~~i~aL~~---~------~~g~~~--------------------s--------~~~~~f~HNd~~~Le~~L~~~~  164 (174)
                      ||..+|.++..   .      .++.|-                    .        ..+..++|||+++||+.|++..
T Consensus       121 a~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  198 (429)
T 3k28_A          121 ATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFG  198 (429)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCC
Confidence            99999976642   0      011000                    0        1467889999999999998753

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=98.97  E-value=4.1e-09  Score=90.43  Aligned_cols=108  Identities=22%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~  123 (174)
                      ..+|+++|||++|   ++||+ .+|+|++|+.+.+++ |...      .+..+++.+|++.|++++ +.+.+++++||..
T Consensus        48 d~~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~e  119 (424)
T 2e7u_A           48 DADGNRYLDYVMSWGPLILGH-AHPKVLARVRETLER-GLTF------GAPSPLEVALAKKVKRAYPFVDLVRFVNSGTE  119 (424)
T ss_dssp             ETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred             eCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHH
Confidence            3688999999998   79999 899999999999976 4322      246788999999999999 7888999999999


Q ss_pred             HHHHHHHH---hccc---------CCCCee-----------------E--------EEEEEecCCCHHHHHHHHHHh
Q psy16850        124 ANDSTLFT---LGKM---------IPYFTE-----------------L--------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       124 aN~~~i~a---L~~~---------~~g~~~-----------------s--------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      ||..++.+   +.+.         .+|...                 .        ..++.++|||+++||+.+++.
T Consensus       120 a~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~  196 (424)
T 2e7u_A          120 ATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRR  196 (424)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhC
Confidence            99999985   5542         111100                 0        136778899999999999864

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=98.96  E-value=1.6e-09  Score=91.43  Aligned_cols=108  Identities=16%  Similarity=0.110  Sum_probs=85.2

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|||++|   +|||+ .+|++++++.++++++...+  .   ....+.+.+|++.||+++|.+.++++++|..|
T Consensus        35 ~~~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~--~---~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a  108 (406)
T 4adb_A           35 DQQGKEYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTG--N---GYTNEPVLRLAKKLIDATFADRVFFCNSGAEA  108 (406)
T ss_dssp             ETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCC--T---TSCCHHHHHHHHHHHHHSSCSEEEEESSHHHH
T ss_pred             eCCCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhccccc--C---CcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHH
Confidence            4689999999999   99999 79999999999987743221  1   12457899999999999999999999999999


Q ss_pred             HHHHHHHhc---------cc------CCCCeeE---------------------EEEEEecCCCHHHHHHHHH
Q psy16850        125 NDSTLFTLG---------KM------IPYFTEL---------------------IYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       125 N~~~i~aL~---------~~------~~g~~~s---------------------~~~~~f~HNd~~~Le~~L~  161 (174)
                      |..++.++.         +.      .+..+.+                     ..+..++|+|+++||+.++
T Consensus       109 ~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  181 (406)
T 4adb_A          109 NEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALID  181 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhc
Confidence            999999883         21      0111111                     2567888999999999886

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=98.96  E-value=1.6e-09  Score=93.23  Aligned_cols=80  Identities=19%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CC-CcEEEecch
Q psy16850         48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QK-EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~-e~al~f~sG  121 (174)
                      ..+|+++|||++|+|   ||. .+|+|++++.+++++++. .+   ...|..+.+.+|++.|++++  +. +.++++++|
T Consensus        39 d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~-~~---~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg  113 (439)
T 3dxv_A           39 EENGRELIDLSGAWGAASLGY-GHPAIVAAVSAAAANPAG-AT---ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSG  113 (439)
T ss_dssp             ETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSCSC-SC---SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSH
T ss_pred             eCCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhccC-cc---ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCH
Confidence            368999999999999   998 799999999999987632 11   34567899999999999999  66 789999999


Q ss_pred             hHHHHHHHHHh
Q psy16850        122 YVANDSTLFTL  132 (174)
Q Consensus       122 y~aN~~~i~aL  132 (174)
                      +.||..+|.++
T Consensus       114 sea~~~al~~~  124 (439)
T 3dxv_A          114 SDANEAAYRAI  124 (439)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999984

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=98.91  E-value=2.7e-09  Score=90.34  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=86.5

Q ss_pred             cCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         49 DSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        49 ~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      .+|+.+|||+++   +|||+ .+|++++++.+++++++.++   +.  ...+...+|++.||+++|.+.++++++|..||
T Consensus        37 ~~g~~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~---~~--~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~  110 (397)
T 2ord_A           37 EKGNAYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCS---NL--FWNRPQMELAELLSKNTFGGKVFFANTGTEAN  110 (397)
T ss_dssp             TTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCC---TT--SEEHHHHHHHHHHHHTTTSCEEEEESSHHHHH
T ss_pred             CCCCEEEECCccccccccCC-CCHHHHHHHHHHHHhcccCc---cc--cCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHH
Confidence            578999999999   99999 79999999999999876542   21  24578999999999999999999999999999


Q ss_pred             HHHHHHhc--------cc------CCCCeeE---------EE------------EEEecCCCHHHHHHHHHH
Q psy16850        126 DSTLFTLG--------KM------IPYFTEL---------IY------------FYRFLANTTDIIKEASKE  162 (174)
Q Consensus       126 ~~~i~aL~--------~~------~~g~~~s---------~~------------~~~f~HNd~~~Le~~L~~  162 (174)
                      ..++.++.        +.      .+..+-+         +.            ++.++++|+++||+.++.
T Consensus       111 ~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~  182 (397)
T 2ord_A          111 EAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSE  182 (397)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHCCT
T ss_pred             HHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCHHHHHHHhhc
Confidence            99999874        21      0111110         12            778899999999998864

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=98.90  E-value=3.8e-09  Score=92.02  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=86.7

Q ss_pred             ecCCeeEEEecc-CcccCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         48 TDSEKEVTVYCS-NDYLGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        48 ~~~g~~~inf~S-ndYLGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      ..+|+++|||+| +++++|. .||+|++|+.+.+++++.+   ++..  ..+.+.+|++.|++++|.+.+++++||..||
T Consensus        72 d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~---~~~~--~~~~~~~l~~~la~~~g~~~v~~~~sGseA~  146 (439)
T 2oat_A           72 DVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT---SRAF--YNNVLGEYEEYITKLFNYHKVLPMNTGVEAG  146 (439)
T ss_dssp             ETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCC---CTTS--EESSHHHHHHHHHHHHTCSEEEEESSHHHHH
T ss_pred             ECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcc---cCcc--CCHHHHHHHHHHHHhcCCCEEEEeCCHHHHH
Confidence            468999999998 7899999 7999999999999886533   2322  4678999999999999999999999999999


Q ss_pred             HHHHHHhc-----------c--c-------CCCCe-----eE-------------EEEEEecCCCHHHHHHHHH
Q psy16850        126 DSTLFTLG-----------K--M-------IPYFT-----EL-------------IYFYRFLANTTDIIKEASK  161 (174)
Q Consensus       126 ~~~i~aL~-----------~--~-------~~g~~-----~s-------------~~~~~f~HNd~~~Le~~L~  161 (174)
                      ..++.++.           +  .       ..|..     .+             ..+..++|||+++||+.|+
T Consensus       147 ~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~  220 (439)
T 2oat_A          147 ETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQ  220 (439)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhC
Confidence            99998864           1  1       11110     00             2467889999999999995

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=98.90  E-value=1.5e-08  Score=87.02  Aligned_cols=109  Identities=14%  Similarity=0.049  Sum_probs=83.4

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~  123 (174)
                      ..+|+++|||+||.   .||. .+|+|++|+.+++++. .      ...+....+.+|+++||+++ +.+.+++++||..
T Consensus        51 d~~g~~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~------~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGse  122 (434)
T 3l44_A           51 DVDGNKYIDYLAAYGPIITGH-AHPHITKAITTAAENG-V------LYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTE  122 (434)
T ss_dssp             ETTCCEEEECCGGGTTCSSCB-TCHHHHHHHHHHHHHC-S------CCSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHH
T ss_pred             ECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhC-c------CCCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHH
Confidence            46899999999985   5776 5999999999998773 1      12345788999999999998 6788999999999


Q ss_pred             HHHHHHHHhcc---c---------CCCCee-----E--------------------EEEEEecCCCHHHHHHHHHHhc
Q psy16850        124 ANDSTLFTLGK---M---------IPYFTE-----L--------------------IYFYRFLANTTDIIKEASKELQ  164 (174)
Q Consensus       124 aN~~~i~aL~~---~---------~~g~~~-----s--------------------~~~~~f~HNd~~~Le~~L~~~~  164 (174)
                      ||..+|.++..   .         ..|...     .                    ..+..++|||+++||+.|++..
T Consensus       123 a~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  200 (434)
T 3l44_A          123 AVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWG  200 (434)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCC
Confidence            99999987642   1         011000     0                    1567889999999999998753

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=98.90  E-value=2e-08  Score=86.36  Aligned_cols=107  Identities=16%  Similarity=0.012  Sum_probs=85.3

Q ss_pred             cCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhHH
Q psy16850         49 DSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYVA  124 (174)
Q Consensus        49 ~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~a  124 (174)
                      .+|+++|||++|   ++||+ .+|+|++++.+.+++ |...      .+..+.+.+|++.|++++ +.+.+++++||..|
T Consensus        53 ~~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA  124 (434)
T 2epj_A           53 VDGARIVDLVLAYGPLILGH-KHPRVLEAVEEALAR-GWLY------GAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEA  124 (434)
T ss_dssp             TTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHH
T ss_pred             CCCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHH
Confidence            688999999998   79999 899999999999877 4321      246788999999999999 88999999999999


Q ss_pred             HHHHHHH---hccc---------CCCCee-----------------E--------EEEEEecCCCHHHHHHHHHHh
Q psy16850        125 NDSTLFT---LGKM---------IPYFTE-----------------L--------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       125 N~~~i~a---L~~~---------~~g~~~-----------------s--------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      |..++.+   +.+.         ..|...                 .        ..++.+++||+++||+.|++.
T Consensus       125 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~  200 (434)
T 2epj_A          125 TMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEY  200 (434)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhC
Confidence            9999987   5441         111100                 0        136678899999999999864

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=98.88  E-value=7.9e-09  Score=90.13  Aligned_cols=82  Identities=9%  Similarity=-0.003  Sum_probs=69.9

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy  122 (174)
                      ..+|+++|||+||   ++||.+ ||+|++|+.+++++.+.++   ....+..+.+.+|+++|++++  +.+.+++++||.
T Consensus        47 d~~G~~~lD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGs  122 (460)
T 3gju_A           47 DNNGRKSIDAFAGLYCVNVGYG-RQKIADAIATQAKNLAYYH---AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGS  122 (460)
T ss_dssp             ETTCCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHHSCCC---CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred             ECCCCEEEECCcchhhccCCCC-CHHHHHHHHHHHHhccccc---cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchH
Confidence            4689999999998   778875 8999999999998876533   344567889999999999998  667899999999


Q ss_pred             HHHHHHHHHhc
Q psy16850        123 VANDSTLFTLG  133 (174)
Q Consensus       123 ~aN~~~i~aL~  133 (174)
                      .||..+|.++.
T Consensus       123 eA~~~al~~~~  133 (460)
T 3gju_A          123 DANETNIKLIW  133 (460)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=98.33  E-value=3.7e-10  Score=100.79  Aligned_cols=108  Identities=17%  Similarity=0.007  Sum_probs=84.9

Q ss_pred             ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~  123 (174)
                      ..+|+++|||+||.|   || ..||+|++|+.+.+++ |++.      .+..+.+.+|+++|++++ +.+.+++++||+.
T Consensus        96 D~dG~~yiD~~~~~~~~~lG-h~~p~V~~Av~~q~~~-~~~~------~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGse  167 (465)
T 2yky_A           96 DVDGHAYVNFLGEYTAGLFG-HSHPVIRAAVERALAV-GLNL------STQTENEALFAEAVCDRFPSIDLVRFTNSGTE  167 (465)
Confidence            368999999999999   66 3599999999998877 4321      246788999999999999 8899999999999


Q ss_pred             HHHHHHHHhc---cc---------CCCCeeE---------E--EEEEecCCCHHHHHHHHHHh
Q psy16850        124 ANDSTLFTLG---KM---------IPYFTEL---------I--YFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       124 aN~~~i~aL~---~~---------~~g~~~s---------~--~~~~f~HNd~~~Le~~L~~~  163 (174)
                      ||.++|.+..   +.         ..|....         +  .++.|+|||+++||++|++.
T Consensus       168 A~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~  230 (465)
T 2yky_A          168 ANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRH  230 (465)
Confidence            9999998652   21         1111110         1  56789999999999999863

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=98.83  E-value=9.3e-09  Score=88.70  Aligned_cols=108  Identities=17%  Similarity=0.114  Sum_probs=86.1

Q ss_pred             cCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHH
Q psy16850         49 DSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVAN  125 (174)
Q Consensus        49 ~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN  125 (174)
                      .+|+++|||+++   ++||. .+|+|++++.+.+++++.++   +.  +..+...+|+++|++++|.+.+++++||..||
T Consensus        54 ~~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~---~~--~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~  127 (420)
T 2pb2_A           54 QQGKEYIDFAGGIAVTALGH-CHPALVEALKSQGETLWHTS---NV--FTNEPALRLGRKLIDATFAERVLFMNSGTEAN  127 (420)
T ss_dssp             TTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCC---TT--SCCHHHHHHHHHHHHHSSCSEEEEESSHHHHH
T ss_pred             CCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhccccc---Cc--cCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHH
Confidence            689999999998   99999 79999999999998876432   22  35689999999999999999999999999999


Q ss_pred             HHHHHHhc---------cc------CCCCeeE---------E------------EEEEecCCCHHHHHHHHHH
Q psy16850        126 DSTLFTLG---------KM------IPYFTEL---------I------------YFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       126 ~~~i~aL~---------~~------~~g~~~s---------~------------~~~~f~HNd~~~Le~~L~~  162 (174)
                      ..++.++.         +.      .+..+-+         .            .+..++++|+++||+.+..
T Consensus       128 ~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i~~  200 (420)
T 2pb2_A          128 ETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDD  200 (420)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHCCT
T ss_pred             HHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHhcc
Confidence            99999874         21      0111110         1            1677889999999998864

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=98.81  E-value=2.7e-09  Score=95.82  Aligned_cols=109  Identities=15%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHH----HHHHHHhCCCc----EEEe-cchh
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLE----EDVARLHQKEA----GLVF-TSCY  122 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE----~~lA~~~g~e~----al~f-~sGy  122 (174)
                      .+..++|+||+    +|+|++|+...+ .+|+.|..|+|...|+. .+.+||    +.+|+++|.+.    +.++ +||+
T Consensus        56 ~i~lias~n~~----~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~-~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt  130 (490)
T 2a7v_A           56 GLELIASENFC----SRAALEALGSCLNNKYSEGYPGKRYYGGAE-VVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS  130 (490)
T ss_dssp             SEECCTTCCCC----CHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred             CceEECCCCCC----CHHHHHHHHHHHcCCCccCCCcccccCccH-HHHHHHHHHHHHHHHHcCCCcccCceEEeCCchH
Confidence            36677899996    899999998876 67999999999998874 567899    99999999997    6665 5999


Q ss_pred             HHHHHHHHHhcccCCCCe------------------------eE---EEEEEec------CCCHHHHHHHHHHhccccc
Q psy16850        123 VANDSTLFTLGKMIPYFT------------------------EL---IYFYRFL------ANTTDIIKEASKELQEDMI  168 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~------------------------~s---~~~~~f~------HNd~~~Le~~L~~~~~~~~  168 (174)
                      .||.+++.+|++  ||++                        ++   ..++.|+      +.|+++||+.+++..+..|
T Consensus       131 ~An~~al~al~~--pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klI  207 (490)
T 2a7v_A          131 PANLAVYTALLQ--PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLI  207 (490)
T ss_dssp             HHHHHHHHHHCC--SCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEE
T ss_pred             HHHHHHHHHHcC--CCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEE
Confidence            999999999986  2321                        11   1233443      6799999999987555443

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=98.79  E-value=1.2e-08  Score=90.23  Aligned_cols=83  Identities=10%  Similarity=0.054  Sum_probs=70.0

Q ss_pred             eecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecch
Q psy16850         47 YTDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSC  121 (174)
Q Consensus        47 ~~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sG  121 (174)
                      +..+|+++|||+||   +.||.+ ||+|++|+.+.+++.+.+++   ...+..+.+.+|+++|++++  +.+.+++++||
T Consensus        50 ~d~~G~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sG  125 (472)
T 3hmu_A           50 NDSEGEEILDAMAGLWCVNIGYG-RDELAEVAARQMRELPYYNT---FFKTTHVPAIALAQKLAELAPGDLNHVFFAGGG  125 (472)
T ss_dssp             EETTCCEEECTTHHHHTCTTCBC-CHHHHHHHHHHHHHCSCCCS---SSSEECHHHHHHHHHHHHHSCTTEEEEEEESSH
T ss_pred             EECCCCEEEECCCchhhccCCCC-CHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCH
Confidence            34689999999997   568986 99999999999998775433   23346789999999999999  46789999999


Q ss_pred             hHHHHHHHHHhc
Q psy16850        122 YVANDSTLFTLG  133 (174)
Q Consensus       122 y~aN~~~i~aL~  133 (174)
                      ..||..+|.++.
T Consensus       126 seA~~~aik~a~  137 (472)
T 3hmu_A          126 SEANDTNIRMVR  137 (472)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999876

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=98.74  E-value=3.3e-08  Score=85.62  Aligned_cols=80  Identities=16%  Similarity=0.007  Sum_probs=67.7

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~  123 (174)
                      ..+|+++|||+||   ++||.+ ||+|++|+.+++++.+.  +.   ..+..+.+.+|+++|+++++.+ ++++++||..
T Consensus        45 d~~g~~~lD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~--~~---~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggse  118 (452)
T 3n5m_A           45 DIQGKRYLDGMSGLWCVNSGYG-RKELAEAAYKQLQTLSY--FP---MSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSE  118 (452)
T ss_dssp             ETTCCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHTTCCC--CC---TTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHH
T ss_pred             ECCCCEEEECCcchhhccCCCC-CHHHHHHHHHHHHhcCC--cc---cccCCHHHHHHHHHHHHhCCCCceEEEeCchHH
Confidence            3689999999999   999985 99999999999987654  11   2356789999999999999742 3888999999


Q ss_pred             HHHHHHHHhc
Q psy16850        124 ANDSTLFTLG  133 (174)
Q Consensus       124 aN~~~i~aL~  133 (174)
                      ||..+|.++.
T Consensus       119 A~~~al~~~~  128 (452)
T 3n5m_A          119 ANETAFKIAR  128 (452)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999886

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=98.73  E-value=7.6e-08  Score=82.50  Aligned_cols=81  Identities=14%  Similarity=0.020  Sum_probs=68.1

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchh
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy  122 (174)
                      ..+|+++|||++   +++||.+ +|+|++|+.+++++.+.++.    ..+..+.+.+|++.|+++++  .+.++++++|.
T Consensus        25 d~~g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~   99 (430)
T 3i4j_A           25 DDAGRRYLDGSSGALVANIGHG-RAEVGERMAAQAARLPFVHG----SQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGS   99 (430)
T ss_dssp             ETTSCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCCCCCT----TTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHH
T ss_pred             ECCCCEEEECCCchhccccCCC-CHHHHHHHHHHHHhcccccc----cccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHH
Confidence            468899999999   4899987 99999999999988653321    13567899999999999995  57899999999


Q ss_pred             HHHHHHHHHhc
Q psy16850        123 VANDSTLFTLG  133 (174)
Q Consensus       123 ~aN~~~i~aL~  133 (174)
                      .||..+|.++.
T Consensus       100 ea~~~al~~~~  110 (430)
T 3i4j_A          100 EATESAVKLAR  110 (430)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=98.71  E-value=1.1e-07  Score=81.68  Aligned_cols=109  Identities=17%  Similarity=0.078  Sum_probs=81.5

Q ss_pred             ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~  123 (174)
                      ..+|+++|||++|.+   ||. .||+|++|+.+.+++...       .....+...+|+++|++++ +.+.+++++||..
T Consensus        49 d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~-------~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGse  120 (429)
T 4e77_A           49 DVDGKAYIDYVGSWGPMILGH-NHPAIRQAVIEAVERGLS-------FGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTE  120 (429)
T ss_dssp             ETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSC-------CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHH
T ss_pred             ECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcc-------cCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHH
Confidence            468999999999854   565 399999999999876321       1235688999999999998 5788999999999


Q ss_pred             HHHHHHHHhc---cc---------CCCCee-----------------E--------EEEEEecCCCHHHHHHHHHHhc
Q psy16850        124 ANDSTLFTLG---KM---------IPYFTE-----------------L--------IYFYRFLANTTDIIKEASKELQ  164 (174)
Q Consensus       124 aN~~~i~aL~---~~---------~~g~~~-----------------s--------~~~~~f~HNd~~~Le~~L~~~~  164 (174)
                      ||..+|.+..   +.         ..|...                 .        ..+..++|||+++||++|++..
T Consensus       121 a~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~  198 (429)
T 4e77_A          121 ATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYP  198 (429)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcC
Confidence            9999988432   21         011111                 0        1356789999999999998753

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=98.71  E-value=1.1e-07  Score=82.97  Aligned_cols=83  Identities=10%  Similarity=0.019  Sum_probs=69.8

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy  122 (174)
                      ..+|+++|||+||   +.||.+ ||+|++|+.+++++.+.+.+   ...+..+.+.+|+++|++++  +.+.+++++||.
T Consensus        46 d~~g~~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggs  121 (459)
T 4a6r_A           46 DSEGNKIIDGMAGLWCVNVGYG-RKDFAEAARRQMEELPFYNT---FFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGS  121 (459)
T ss_dssp             ETTCCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCSCCCT---TSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHH
T ss_pred             ECCCCEEEECCCchhcccCCCC-CHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchH
Confidence            4689999999997   668885 99999999999998765433   23457789999999999999  567899999999


Q ss_pred             HHHHHHHHHhcc
Q psy16850        123 VANDSTLFTLGK  134 (174)
Q Consensus       123 ~aN~~~i~aL~~  134 (174)
                      .||..+|.++..
T Consensus       122 eA~~~al~~~~~  133 (459)
T 4a6r_A          122 ESVDTMIRMVRR  133 (459)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998863

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=98.71  E-value=3.3e-08  Score=85.76  Aligned_cols=81  Identities=15%  Similarity=0.045  Sum_probs=68.2

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy  122 (174)
                      ..+|+++|||+|   +++||.+ ||+|++|+.+++++.+.++    ...+..+...+|+++|++++  +.+.+++++||.
T Consensus        40 d~~g~~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs  114 (448)
T 3dod_A           40 DINGKEYYDGFSSVWLNVHGHR-KKELDDAIKKQLGKIAHST----LLGMTNVPATQLAETLIDISPKKLTRVFYSDSGA  114 (448)
T ss_dssp             ETTSCEEEETTHHHHTCSSCBS-CHHHHHHHHHHHTTCSCCC----CSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred             ECCCCEEEECCcchhhccCCCC-CHHHHHHHHHHHHhccCcc----ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchH
Confidence            468999999999   5789987 9999999999998764322    13456789999999999999  568899999999


Q ss_pred             HHHHHHHHHhc
Q psy16850        123 VANDSTLFTLG  133 (174)
Q Consensus       123 ~aN~~~i~aL~  133 (174)
                      .||..+|.++.
T Consensus       115 eA~~~al~~~~  125 (448)
T 3dod_A          115 EAMEIALKMAF  125 (448)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=98.66  E-value=2.5e-07  Score=79.16  Aligned_cols=108  Identities=18%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~  123 (174)
                      ..+|+++|||++|   +.||. .+|+|++|+.+.+++.. .      .....+.+.+|+++|++++ +.+.++++++|..
T Consensus        48 d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-~------~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggse  119 (427)
T 3fq8_A           48 DVDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGT-S------FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTE  119 (427)
T ss_dssp             ETTSCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCS-C------CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHH
T ss_pred             ECCCCEEEECCCchhhhccCC-CCHHHHHHHHHHHHhCC-C------cCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHH
Confidence            4689999999999   56777 69999999999987642 1      1226789999999999999 5778999999999


Q ss_pred             HHHHHHHHh---ccc---------CCCCeeE-------------------------EEEEEecCCCHHHHHHHHHHh
Q psy16850        124 ANDSTLFTL---GKM---------IPYFTEL-------------------------IYFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       124 aN~~~i~aL---~~~---------~~g~~~s-------------------------~~~~~f~HNd~~~Le~~L~~~  163 (174)
                      ||..+|...   .+.         ..|....                         ..+..++|||+++||++|++.
T Consensus       120 a~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~  196 (427)
T 3fq8_A          120 ACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN  196 (427)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhC
Confidence            999998432   221         0110000                         137789999999999999875

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=98.65  E-value=3.2e-07  Score=79.36  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=78.4

Q ss_pred             cCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhHH
Q psy16850         49 DSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYVA  124 (174)
Q Consensus        49 ~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~a  124 (174)
                      .+|+++|||++|   ++||+ .+|+|++++.+.+++ +.+.      .+..++..+|.+.|++.+ +.+.+++++||..|
T Consensus        54 ~~g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA  125 (453)
T 2cy8_A           54 VDGNVYLDFFGGHGALVLGH-GHPRVNAAIAEALSH-GVQY------AASHPLEVRWAERIVAAFPSIRKLRFTGSGTET  125 (453)
T ss_dssp             TTCCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHTT-TCSS------CSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHH
T ss_pred             CCCCEEEECcccHhhcccCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHH
Confidence            678999999999   99999 899999999999876 3321      234455555555555555 78889999999999


Q ss_pred             HHHHHHH---hccc------CCCCe-----------------e--EE------EEEEecCCCHHHHHHHHHHh
Q psy16850        125 NDSTLFT---LGKM------IPYFT-----------------E--LI------YFYRFLANTTDIIKEASKEL  163 (174)
Q Consensus       125 N~~~i~a---L~~~------~~g~~-----------------~--s~------~~~~f~HNd~~~Le~~L~~~  163 (174)
                      |..++.+   +.+.      .+..+                 .  .+      .++.+++||+++||+.|++.
T Consensus       126 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~  198 (453)
T 2cy8_A          126 TLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANH  198 (453)
T ss_dssp             HHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHHHHHhc
Confidence            9999998   6542      01111                 0  01      25678899999999999864

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=98.65  E-value=7.1e-08  Score=84.70  Aligned_cols=81  Identities=14%  Similarity=-0.011  Sum_probs=68.1

Q ss_pred             ec-CCe--eEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEec
Q psy16850         48 TD-SEK--EVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFT  119 (174)
Q Consensus        48 ~~-~g~--~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~  119 (174)
                      .. +|+  ++|||+||   ++||. .||+|++|+.+.+++++..+    ...+..+.+.+|+++|++++  +.+.+++++
T Consensus        68 d~~dG~~~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~----~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~  142 (457)
T 3tfu_A           68 LIRDGQPIEVLDAMSSWWTAIHGH-GHPALDQALTTQLRVMNHVM----FGGLTHEPAARLAKLLVDITPAGLDTVFFSD  142 (457)
T ss_dssp             EEETTEEEEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCC----SSSEECHHHHHHHHHHHHHSSTTEEEEEEES
T ss_pred             EccCCCeeEEEECCCcHhhhccCC-CCHHHHHHHHHHHHhccCcc----ccccCCHHHHHHHHHHHHhCCCCcCEEEEeC
Confidence            36 999  99999997   78998 79999999999998865332    11235688999999999999  567899999


Q ss_pred             chhHHHHHHHHHhc
Q psy16850        120 SCYVANDSTLFTLG  133 (174)
Q Consensus       120 sGy~aN~~~i~aL~  133 (174)
                      ||..||..+|.++.
T Consensus       143 sGseA~~~Alk~a~  156 (457)
T 3tfu_A          143 SGSVSVEVAAKMAL  156 (457)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999998774

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=98.60  E-value=1e-07  Score=81.88  Aligned_cols=99  Identities=14%  Similarity=0.138  Sum_probs=81.7

Q ss_pred             cCCCCCccchHHHHHHHHHcCC-------CccccccccCCchHH--HHHHHHHHHHhC----------CCcEEEecchhH
Q psy16850         63 LGMSCHPKVKSAVREALEKFGT-------GAGGTRNISGNSLFH--EKLEEDVARLHQ----------KEAGLVFTSCYV  123 (174)
Q Consensus        63 LGL~~~p~v~~a~~~al~~~G~-------gs~~Sr~~~G~~~~~--~~LE~~lA~~~g----------~e~al~f~sGy~  123 (174)
                      ||++.+|...+++.+++++++.       |++++|.+.++.+.+  .+|+++||+|++          .+.++++++|+.
T Consensus        43 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~  122 (435)
T 3piu_A           43 MGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATS  122 (435)
T ss_dssp             CSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHH
T ss_pred             eccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHH
Confidence            6778888888899999888765       777888888887776  899999999998          788999999999


Q ss_pred             HHHHHHHHhcccCCCCee------------------EEEEEEecCC-------CHHHHHHHHHHh
Q psy16850        124 ANDSTLFTLGKMIPYFTE------------------LIYFYRFLAN-------TTDIIKEASKEL  163 (174)
Q Consensus       124 aN~~~i~aL~~~~~g~~~------------------s~~~~~f~HN-------d~~~Le~~L~~~  163 (174)
                      ||..++.++.+  +|..+                  .++++.++|+       |+++||+.|++.
T Consensus       123 a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~  185 (435)
T 3piu_A          123 ANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEA  185 (435)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHH
Confidence            99999999976  33322                  1467788886       899999999874

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=98.55  E-value=4.3e-07  Score=80.93  Aligned_cols=111  Identities=15%  Similarity=0.089  Sum_probs=81.7

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e~al~f~sGy~  123 (174)
                      ..+|+++|||.+.-   -||- .||+|++|+.+++++. ..      +.+....+.+|+++|++.+ +.+.+.+++||+.
T Consensus        83 D~dG~~ylD~~~g~~~~~lGH-~hp~v~~Av~~q~~~~-~~------~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsE  154 (454)
T 4ao9_A           83 DADGHRYADFIAEYTAGVYGH-SAPEIRDAVIEAMQGG-IN------LTGHNLLEGRLARLICERFPQIEQLRFTNSGTE  154 (454)
T ss_dssp             ETTCCEEEESSGGGGTTTTCS-CCHHHHHHHHHHHHTC-SC------CCSEESSHHHHHHHHHHHSTTCSEEEEESSHHH
T ss_pred             ECCCCEEEEccccHHhhcccC-CCHHHHHHHHHHHhcC-CC------ccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHH
Confidence            47899999997653   3443 3999999999998763 22      2234567899999999988 5667777799999


Q ss_pred             HHHHHHHHhcc---c---------CCCCee-----------EEEEEEecCCCHHHHHHHHHHhccc
Q psy16850        124 ANDSTLFTLGK---M---------IPYFTE-----------LIYFYRFLANTTDIIKEASKELQED  166 (174)
Q Consensus       124 aN~~~i~aL~~---~---------~~g~~~-----------s~~~~~f~HNd~~~Le~~L~~~~~~  166 (174)
                      ||.+.|.....   +         ..|...           -..+..+++||.+.||+.+++..++
T Consensus       155 A~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~  220 (454)
T 4ao9_A          155 ANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPE  220 (454)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCc
Confidence            99999986542   0         111111           0357789999999999999987653

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=98.54  E-value=1.7e-07  Score=79.01  Aligned_cols=108  Identities=16%  Similarity=0.114  Sum_probs=82.6

Q ss_pred             cCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchhH
Q psy16850         49 DSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCYV  123 (174)
Q Consensus        49 ~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy~  123 (174)
                      .+|+.+|||++|   ++||+ .+|++++++.+++++++.++   +..  ..+.+.++++.||+++  +.+.++++++|..
T Consensus        42 ~~g~~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~  115 (395)
T 1vef_A           42 AEGNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMP---QTL--PTPMRGEFYRTLTAILPPELNRVFPVNSGTE  115 (395)
T ss_dssp             TTSCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC---TTS--CCHHHHHHHHHHHHTSCTTEEEEEEESSHHH
T ss_pred             CCCCEEEEccCccccccCCC-CCHHHHHHHHHHHHhCCCCc---ccc--CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHH
Confidence            578899999998   78898 79999999999998876432   222  4678999999999999  6677899999999


Q ss_pred             HHHHHHHHhc---cc------CCCCee--------E-E------------EEEEecCCCHHHHHHHHHH
Q psy16850        124 ANDSTLFTLG---KM------IPYFTE--------L-I------------YFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       124 aN~~~i~aL~---~~------~~g~~~--------s-~------------~~~~f~HNd~~~Le~~L~~  162 (174)
                      |+..++.++.   ..      .+..+-        . +            .+..++++|+++||+.++.
T Consensus       116 a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~  184 (395)
T 1vef_A          116 ANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE  184 (395)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhcc
Confidence            9999998763   21      111110        0 1            1566788999999998864

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=98.51  E-value=2.1e-07  Score=79.02  Aligned_cols=81  Identities=20%  Similarity=0.064  Sum_probs=67.0

Q ss_pred             cCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-C-C-CcEEEecchh
Q psy16850         49 DSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-Q-K-EAGLVFTSCY  122 (174)
Q Consensus        49 ~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g-~-e~al~f~sGy  122 (174)
                      .+|+++|+|++|.   +||+ .+|++++++.+++++++.++.    ..+....+.+|+++||+++ | . +..+++++|.
T Consensus        38 ~~g~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~  112 (426)
T 1sff_A           38 VEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCF----QVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS  112 (426)
T ss_dssp             TTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCT----TTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred             CCCCEEEEcccChhhcccCC-CCHHHHHHHHHHHHhCCCccc----cccCCHHHHHHHHHHHHhCCcccccEEEEeCchH
Confidence            6789999999998   8998 799999999999877654321    2445688999999999999 6 4 6788999999


Q ss_pred             HHHHHHHH---Hhcc
Q psy16850        123 VANDSTLF---TLGK  134 (174)
Q Consensus       123 ~aN~~~i~---aL~~  134 (174)
                      .|+..++.   ++.+
T Consensus       113 ~a~~~~~~~a~~~~~  127 (426)
T 1sff_A          113 EAVENAVKIARAATK  127 (426)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhC
Confidence            99999988   5654

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=98.51  E-value=3.3e-08  Score=87.15  Aligned_cols=81  Identities=16%  Similarity=0.141  Sum_probs=61.5

Q ss_pred             ecCCeeEEEeccCcc---cCCCCCccchHHHHHHHHHcCCCccccccccC---CchHHHHHHHHHHHHh--CCCcEEEec
Q psy16850         48 TDSEKEVTVYCSNDY---LGMSCHPKVKSAVREALEKFGTGAGGTRNISG---NSLFHEKLEEDVARLH--QKEAGLVFT  119 (174)
Q Consensus        48 ~~~g~~~inf~SndY---LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G---~~~~~~~LE~~lA~~~--g~e~al~f~  119 (174)
                      ..+|+++|||+|++|   ||. .||+|++|+.++++.++.+.+.   ..|   ...+.++|++.|++++  +.+.+++++
T Consensus        59 d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~  134 (472)
T 1ohv_A           59 DVDGNRMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRP---ALGILPPENFVEKLRESLLSVAPKGMSQLITMA  134 (472)
T ss_dssp             BTTSCEEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCC---CTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEES
T ss_pred             eCCCCEEEECCCCHhhcccCC-CCHHHHHHHHHHHhhccccccc---ccccccHHHHHHHHHHHHHHhCCCCcCEEEEeC
Confidence            378999999999988   565 5999999999987655433321   123   3455666666666776  678899999


Q ss_pred             chhHHHHHHHHHh
Q psy16850        120 SCYVANDSTLFTL  132 (174)
Q Consensus       120 sGy~aN~~~i~aL  132 (174)
                      ||+.||.++|.++
T Consensus       135 sGseA~~~Aik~a  147 (472)
T 1ohv_A          135 CGSCSNENAFKTI  147 (472)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHH
Confidence            9999999999877

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=98.50  E-value=7.4e-07  Score=76.29  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=64.6

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy  122 (174)
                      ..+|+.+|||++|   ++||. .+|+|++++.+++++++..+. +   .+....+.+|+++||+++  +.+.++++++|.
T Consensus        39 d~~g~~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~-~---~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt  113 (429)
T 1s0a_A           39 LSDGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMF-G---GITHAPAIELCRKLVAMTPQPLECVFLADSGS  113 (429)
T ss_dssp             ETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCC-S---SEECHHHHHHHHHHHHHSCTTCCEEEEESSHH
T ss_pred             eCCCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccc-c---ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHH
Confidence            3678999999998   58997 599999999999987653221 1   123567899999999999  577889999999


Q ss_pred             HHHHHHHHHh
Q psy16850        123 VANDSTLFTL  132 (174)
Q Consensus       123 ~aN~~~i~aL  132 (174)
                      .||..+|.++
T Consensus       114 ea~~~ai~~~  123 (429)
T 1s0a_A          114 VAVEVAMKMA  123 (429)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998865

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=98.48  E-value=1.4e-06  Score=74.74  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=66.8

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecch
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sG  121 (174)
                      ..+|+.+|||++|.   +||.+.+|+|++|+.+++++++. .+.+   .+....+.+|++.||+++|.   +.++++++|
T Consensus        38 d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~~---~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg  113 (419)
T 2eo5_A           38 DVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAAN---DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSG  113 (419)
T ss_dssp             ETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSCS---CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred             ECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-cccc---ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCch
Confidence            36789999999986   89998899999999999977643 1111   34567899999999999995   467888889


Q ss_pred             hHHHHHHHHHhc
Q psy16850        122 YVANDSTLFTLG  133 (174)
Q Consensus       122 y~aN~~~i~aL~  133 (174)
                      ..||..++.++.
T Consensus       114 ~ea~~~ai~~~~  125 (419)
T 2eo5_A          114 TEAIEASIKVVK  125 (419)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998654

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=98.46  E-value=3.3e-07  Score=78.45  Aligned_cols=88  Identities=14%  Similarity=0.041  Sum_probs=70.6

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C-CCcEEEecchhH
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q-KEAGLVFTSCYV  123 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g-~e~al~f~sGy~  123 (174)
                      .+++++|+|++|||+ +..+|.|++++.+++++++.+.+.+  -++....+.+|+++||+|+    + .++.|+|++|+.
T Consensus        53 ~~~~~~i~l~~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~  129 (432)
T 3ei9_A           53 YPDAQVISLGIGDTT-EPIPEVITSAMAKKAHELSTIEGYS--GYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK  129 (432)
T ss_dssp             CTTCCCEECSSCCCC-SCCCHHHHHHHHHHHHHTTSTTTCC--CCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred             CCCCCeEEccCCCCC-CCCCHHHHHHHHHHHhcccccCCcc--CCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChH
Confidence            356789999999999 9999999999999999887654433  2234456789999999996    3 457899999999


Q ss_pred             HHHHHHHHhcccCCCCee
Q psy16850        124 ANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus       124 aN~~~i~aL~~~~~g~~~  141 (174)
                      .++.++.++++  +|..+
T Consensus       130 ~al~~l~~l~~--~gd~V  145 (432)
T 3ei9_A          130 CDISRLQVMFG--SNVTI  145 (432)
T ss_dssp             HHHHHHHHHHC--TTCCE
T ss_pred             HHHHHHHHHcC--CCCEE
Confidence            99999988876  55443

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=98.40  E-value=1e-06  Score=76.94  Aligned_cols=81  Identities=15%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG  121 (174)
                      ..+|+++|||++|   +.||.+ ||+|++|+.+++++.. ..   ....+..+.+.+|+++|+++++   .+.+++++||
T Consensus        60 d~~G~~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~-~~---~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sG  134 (453)
T 4ffc_A           60 DADGNSFIDLGAGIAVTTVGAS-HPAVAAAIADQATHFT-HT---CFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSG  134 (453)
T ss_dssp             ETTSCEEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCS-CC---TTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred             eCCCCEEEEcCCCcccCcCCCC-CHHHHHHHHHHHHhcc-cc---ccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcH
Confidence            4689999999997   558875 9999999999998753 21   1234678899999999999996   5689999999


Q ss_pred             hHHHHHHHHHhc
Q psy16850        122 YVANDSTLFTLG  133 (174)
Q Consensus       122 y~aN~~~i~aL~  133 (174)
                      ..||..+|.++.
T Consensus       135 seA~~~alk~a~  146 (453)
T 4ffc_A          135 AEAVENAIKVAR  146 (453)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999997653

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.38  E-value=9.6e-07  Score=74.46  Aligned_cols=107  Identities=20%  Similarity=0.217  Sum_probs=81.1

Q ss_pred             EEeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-EEecchhHHHHHH
Q psy16850         55 TVYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-LVFTSCYVANDST  128 (174)
Q Consensus        55 inf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-l~f~sGy~aN~~~  128 (174)
                      ..++|+||+    +|+|++++.+.+ +.|+.|..+++...|. ..+.++|+    .+|+++|.+.+ ++++||..||..+
T Consensus        29 ~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~  103 (417)
T 3n0l_A           29 EMIASENFT----LPEVMEVMGSILTNKYAEGYPGKRYYGGC-EFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGV  103 (417)
T ss_dssp             ECCTTCCCC----CHHHHHHHTBGGGGCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred             eeecccCCC----CHHHHHHHhhhhhccccccCCCccccccc-hHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHH
Confidence            346788887    999999999888 6677777777776655 77888887    88999999888 9999999999999


Q ss_pred             HHHhcccCCCCeeEE----------------------EEEEecC-----CCHHHHHHHHHHhccccc
Q psy16850        129 LFTLGKMIPYFTELI----------------------YFYRFLA-----NTTDIIKEASKELQEDMI  168 (174)
Q Consensus       129 i~aL~~~~~g~~~s~----------------------~~~~f~H-----Nd~~~Le~~L~~~~~~~~  168 (174)
                      +.++.+  +|....+                      ..+.+++     .|+++|++.+++.....|
T Consensus       104 ~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v  168 (417)
T 3n0l_A          104 YAALIN--PGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLI  168 (417)
T ss_dssp             HHHHSC--TTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEE
T ss_pred             HHHhcC--CCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEE
Confidence            999975  4433220                      1233444     799999999986444333

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=98.38  E-value=2.3e-06  Score=70.74  Aligned_cols=102  Identities=15%  Similarity=0.032  Sum_probs=80.9

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchhHHHH
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVAND  126 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~aN~  126 (174)
                      .+++.+|+|++|+ ..+..+|++++++.++++... +       + ....+.+|++.||+++|.  +..+++++|..|+.
T Consensus        13 ~~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~-~-------y-~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~   82 (354)
T 3ly1_A           13 PSTDNPIRINFNE-NPLGMSPKAQAAARDAVVKAN-R-------Y-AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIR   82 (354)
T ss_dssp             CCSSSCEECSSCC-CSSCCCHHHHHHHHHTGGGTT-S-------C-CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHH
T ss_pred             CCCCceEEccCCC-CCCCCCHHHHHHHHHHHhhCc-C-------C-CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHH
Confidence            4678899999987 677789999999998876411 1       1 124578999999999994  67888899999999


Q ss_pred             HHHHHhcccCCCCeeE-----------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        127 STLFTLGKMIPYFTEL-----------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       127 ~~i~aL~~~~~g~~~s-----------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                      .++.++.+  +|.+..                 +.++.++++     |+++|++.+++
T Consensus        83 ~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  138 (354)
T 3ly1_A           83 AAIEAYAS--LEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAA  138 (354)
T ss_dssp             HHHHHHCC--TTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHT
T ss_pred             HHHHHHhC--CCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhcc
Confidence            99999975  454332                 367888998     99999999985

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=98.35  E-value=1.3e-06  Score=75.91  Aligned_cols=106  Identities=23%  Similarity=0.206  Sum_probs=80.0

Q ss_pred             eccCcccCCCCCccchHHHHHHHH-HcCCCccccccccCCchHH--HHHH-HHHHHHhCCCcEEE-ecchhHHHHHHHHH
Q psy16850         57 YCSNDYLGMSCHPKVKSAVREALE-KFGTGAGGTRNISGNSLFH--EKLE-EDVARLHQKEAGLV-FTSCYVANDSTLFT  131 (174)
Q Consensus        57 f~SndYLGL~~~p~v~~a~~~al~-~~G~gs~~Sr~~~G~~~~~--~~LE-~~lA~~~g~e~al~-f~sGy~aN~~~i~a  131 (174)
                      ++++||+    +|+|++++.+.+. .|+.|..++|...|.....  +++. +.+++++|.+.+.+ ++||..||..++.+
T Consensus        51 ~~~~~~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~  126 (447)
T 3h7f_A           51 IASENFV----PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHA  126 (447)
T ss_dssp             CTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHH
T ss_pred             ecCCCCC----CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHH
Confidence            4677776    9999999998884 7888888888887766544  4444 99999999999988 99999999999999


Q ss_pred             hcccCCCCeeE----------------------EEEEEec------CCCHHHHHHHHHHhccccc
Q psy16850        132 LGKMIPYFTEL----------------------IYFYRFL------ANTTDIIKEASKELQEDMI  168 (174)
Q Consensus       132 L~~~~~g~~~s----------------------~~~~~f~------HNd~~~Le~~L~~~~~~~~  168 (174)
                      +.+  +|.++.                      ..+..++      +.|+++||+.+++..+..|
T Consensus       127 ~~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i  189 (447)
T 3h7f_A          127 LMS--PGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVI  189 (447)
T ss_dssp             HCC--TTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEE
T ss_pred             hcC--CCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEE
Confidence            875  333221                      1233343      6899999999977554433

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=98.32  E-value=1.6e-06  Score=74.22  Aligned_cols=78  Identities=18%  Similarity=0.235  Sum_probs=64.3

Q ss_pred             cCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchhH
Q psy16850         49 DSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCYV  123 (174)
Q Consensus        49 ~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy~  123 (174)
                      .+|+++|||+++.   +||. .+|+|++++.+.+++++..   +  ..+....+.+|++.|+++++  .+.++++++|..
T Consensus        40 ~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~--~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~e  113 (433)
T 1zod_A           40 ADGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHL---F--SEMLSRPVVDLATRLANITPPGLDRALLLSTGAE  113 (433)
T ss_dssp             TTCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCC---C--TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHH
T ss_pred             CCCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCccc---c--cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHH
Confidence            5789999998876   6886 6999999999999886532   1  13456789999999999996  567888899999


Q ss_pred             HHHHHHHHh
Q psy16850        124 ANDSTLFTL  132 (174)
Q Consensus       124 aN~~~i~aL  132 (174)
                      ||..++.++
T Consensus       114 a~~~a~~~~  122 (433)
T 1zod_A          114 SNEAAIRMA  122 (433)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999754

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=98.30  E-value=1.7e-06  Score=72.02  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             ecCCeeEEEeccCcc-cCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-CcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSNDY-LGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-EAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~SndY-LGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-e~al~f~sGy~a  124 (174)
                      ..+|+.+|||+++.+ +.|. .+|++++++.+++++++..  +++  + ....+.+|++.||+++|. +.++++++|..|
T Consensus        24 ~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~--~~~--y-~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a   98 (375)
T 2eh6_A           24 DEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHV--SNL--Y-ENPWQEELAHKLVKHFWTEGKVFFANSGTES   98 (375)
T ss_dssp             ETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCC--CTT--B-CCHHHHHHHHHHHHTSSSCEEEEEESSHHHH
T ss_pred             eCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhcccc--Ccc--c-CCHHHHHHHHHHHhhcCCCCeEEEeCchHHH
Confidence            357889999999988 6777 7999999999999887532  122  1 246789999999999998 889999999999


Q ss_pred             HHHHHHH
Q psy16850        125 NDSTLFT  131 (174)
Q Consensus       125 N~~~i~a  131 (174)
                      +..++.+
T Consensus        99 ~~~~~~~  105 (375)
T 2eh6_A           99 VEAAIKL  105 (375)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998865

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=98.30  E-value=1.7e-06  Score=72.59  Aligned_cols=105  Identities=22%  Similarity=0.236  Sum_probs=79.7

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHH-HcCCCccccccccCCchHHHHHH----HHHHHHhCCCcEEE-ecchhHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALE-KFGTGAGGTRNISGNSLFHEKLE----EDVARLHQKEAGLV-FTSCYVAND  126 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~-~~G~gs~~Sr~~~G~~~~~~~LE----~~lA~~~g~e~al~-f~sGy~aN~  126 (174)
                      .+++|++++|+    +|++++++.+.++ .++.|..+++...|.. .+.+||    +.||+++|.+.+.+ ++||..|+.
T Consensus        25 ~~~~~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~   99 (405)
T 2vi8_A           25 KIELIASENFV----SRAVMEAQGSVLTNKYAEGYPGRRYYGGCE-YVDIVEELARERAKQLFGAEHANVQPHSGAQANM   99 (405)
T ss_dssp             SEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred             ceeeccCcccC----CHHHHHHHHHHhhcccccCCCCccccccch-HHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHH
Confidence            47899999998    9999999999885 6777777777666543 467888    59999999988865 699999999


Q ss_pred             HHHHHhcccCCCCe-------------------eE-E--EEEEecC------CCHHHHHHHHHHhc
Q psy16850        127 STLFTLGKMIPYFT-------------------EL-I--YFYRFLA------NTTDIIKEASKELQ  164 (174)
Q Consensus       127 ~~i~aL~~~~~g~~-------------------~s-~--~~~~f~H------Nd~~~Le~~L~~~~  164 (174)
                      .++.++.+  +|..                   .. +  .++.+++      .|+++|++.+.+..
T Consensus       100 ~a~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~  163 (405)
T 2vi8_A          100 AVYFTVLE--HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHR  163 (405)
T ss_dssp             HHHHHHCC--TTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC
T ss_pred             HHHHHhcC--CCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcC
Confidence            99999865  2211                   11 1  4556653      58999999998643

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=98.29  E-value=2.2e-06  Score=71.27  Aligned_cols=104  Identities=12%  Similarity=-0.005  Sum_probs=77.6

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecc
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTS  120 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~s  120 (174)
                      .+|+++|+|++|+ ..+..+|++++++.+++++...+.+   . .|     .+|++.||++++        .+..+++++
T Consensus        20 ~~g~~~idl~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~---~-~~-----~~lr~~la~~~~~~~~~~~~~~~i~~t~g   89 (377)
T 3fdb_A           20 RYGQGVLPLWVAE-SDFSTCPAVLQAITDAVQREAFGYQ---P-DG-----SLLSQATAEFYADRYGYQARPEWIFPIPD   89 (377)
T ss_dssp             SSCTTSEECCSSC-CCSCCCHHHHHHHHHHHHTTCCSSC---C-SS-----CCHHHHHHHHHHHHHCCCCCGGGEEEESC
T ss_pred             ccCCCeeeecccC-CCCCCCHHHHHHHHHHHHcCCCCCC---C-CC-----HHHHHHHHHHHHHHhCCCCCHHHEEEeCC
Confidence            4678999999997 7788899999999998875211111   0 12     567777777765        567899999


Q ss_pred             hhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC---CHHHHHHHHHHhc
Q psy16850        121 CYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN---TTDIIKEASKELQ  164 (174)
Q Consensus       121 Gy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN---d~~~Le~~L~~~~  164 (174)
                      |..|+..++.++.+  +|.+..                 +.++.++++   |+++||+.+++..
T Consensus        90 ~~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~  151 (377)
T 3fdb_A           90 VVRGLYIAIDHFTP--AQSKVIVPTPAYPPFFHLLSATQREGIFIDATGGINLHDVEKGFQAGA  151 (377)
T ss_dssp             HHHHHHHHHHHHSC--TTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTSCCHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhcC--CCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCCCCHHHHHHHhccCC
Confidence            99999999999975  444332                 356778887   9999999998753

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=98.28  E-value=6.5e-06  Score=68.41  Aligned_cols=105  Identities=11%  Similarity=0.012  Sum_probs=77.6

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecchhHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSCYVANDS  127 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sGy~aN~~  127 (174)
                      .+.+|+|++|+ ..+..+|++++++.+.++..+....      +. ..+.+|++.||+++|.   +..++.++|..++..
T Consensus        29 ~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~~y------~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~  100 (367)
T 3euc_A           29 SHGLVKLDAME-NPYRLPPALRSELAARLGEVALNRY------PV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISM  100 (367)
T ss_dssp             CTTCEECCSSC-CCCCCCHHHHHHHHHHHHHHHTTCS------CC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHH
T ss_pred             CCCeeEccCCC-CCCCCCHHHHHHHHHHhhhhhhhcC------CC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHH
Confidence            35789999998 7788899999999998875322111      11 2478999999999998   667778888889989


Q ss_pred             HHHHhcccCCCCeeE-----------------EEEEEec-----CCCHHHHHHHHHHhcc
Q psy16850        128 TLFTLGKMIPYFTEL-----------------IYFYRFL-----ANTTDIIKEASKELQE  165 (174)
Q Consensus       128 ~i~aL~~~~~g~~~s-----------------~~~~~f~-----HNd~~~Le~~L~~~~~  165 (174)
                      ++.++.+  +|.+..                 +.++.++     +.|+++|++.+++...
T Consensus       101 ~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~  158 (367)
T 3euc_A          101 LALAAAR--PGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQP  158 (367)
T ss_dssp             HHHHTCC--TTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCC
T ss_pred             HHHHHcC--CCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCC
Confidence            9998865  444332                 2445555     5699999999987433

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=98.25  E-value=2.7e-06  Score=71.55  Aligned_cols=111  Identities=22%  Similarity=0.160  Sum_probs=70.2

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCc--hH-HHHHHHHHHHHhCCCcEE-EecchhHHHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNS--LF-HEKLEEDVARLHQKEAGL-VFTSCYVANDST  128 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~--~~-~~~LE~~lA~~~g~e~al-~f~sGy~aN~~~  128 (174)
                      +..++|+||+    +|+|++++.+.+ +.++.|..+++...+..  +. .+..++.+++++|.+.+. +++||..||..+
T Consensus        33 ~~~~~~~n~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a  108 (420)
T 3gbx_A           33 IELIASENYT----SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAV  108 (420)
T ss_dssp             EECCTTCCCC----CHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred             eeeeccCCCC----CHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHH
Confidence            5678899993    999999999988 56777777777665543  22 233447899999998874 499999999999


Q ss_pred             HHHhcccCCCCeeEE----------------------EEEEe-----cCCCHHHHHHHHHHhccccccc
Q psy16850        129 LFTLGKMIPYFTELI----------------------YFYRF-----LANTTDIIKEASKELQEDMIDL  170 (174)
Q Consensus       129 i~aL~~~~~g~~~s~----------------------~~~~f-----~HNd~~~Le~~L~~~~~~~~~~  170 (174)
                      +.++.+  +|..+.+                      ..+.+     -+.|+++||+.+++.....|=+
T Consensus       109 ~~~~~~--~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~  175 (420)
T 3gbx_A          109 YTALLQ--PGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIG  175 (420)
T ss_dssp             HHHHCC--TTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHhcC--CCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEE
Confidence            999876  4443221                      11222     2489999999998764444433

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=98.25  E-value=9.8e-07  Score=76.08  Aligned_cols=80  Identities=14%  Similarity=0.074  Sum_probs=67.5

Q ss_pred             cCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchhH
Q psy16850         49 DSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCYV  123 (174)
Q Consensus        49 ~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy~  123 (174)
                      .+|+++|||+++.   +||+. +|+|++|+.+.+++++    .++...+..+...+|++.|++++  +.+.++++++|..
T Consensus        47 ~~g~~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggse  121 (449)
T 3a8u_X           47 DKGRKVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTLD----YSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSE  121 (449)
T ss_dssp             TTCCEEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTCS----CCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHH
T ss_pred             CCCCEEEECCccHhhccCCCC-CHHHHHHHHHHHHhCC----CccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence            5789999998765   89998 9999999999987765    23443567889999999999999  5677899999999


Q ss_pred             HHHHHHHHhc
Q psy16850        124 ANDSTLFTLG  133 (174)
Q Consensus       124 aN~~~i~aL~  133 (174)
                      ||..++.++.
T Consensus       122 a~~~al~~~~  131 (449)
T 3a8u_X          122 CALTAVKMVR  131 (449)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998774

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=98.23  E-value=3.1e-06  Score=71.30  Aligned_cols=111  Identities=24%  Similarity=0.246  Sum_probs=73.6

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCc--hHHHHHH-HHHHHHhCCCcEEE-ecchhHHHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNS--LFHEKLE-EDVARLHQKEAGLV-FTSCYVANDST  128 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~--~~~~~LE-~~lA~~~g~e~al~-f~sGy~aN~~~  128 (174)
                      +..++++||+    +|+|++++.+.+ +.|+.|..+++...|..  +..+++. +.+++++|.+.+.+ +++|..|+..+
T Consensus        35 i~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~a  110 (425)
T 3ecd_A           35 VELIASENIV----SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAV  110 (425)
T ss_dssp             EECCTTCCCC----CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred             eeeecccCCC----CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHH
Confidence            4456778887    999999999988 57777777777666543  3666766 78999999998844 99999999999


Q ss_pred             HHHhcccCCCCeeE----------------------EEEEEecCC------CHHHHHHHHHHhccccccc
Q psy16850        129 LFTLGKMIPYFTEL----------------------IYFYRFLAN------TTDIIKEASKELQEDMIDL  170 (174)
Q Consensus       129 i~aL~~~~~g~~~s----------------------~~~~~f~HN------d~~~Le~~L~~~~~~~~~~  170 (174)
                      +.++.+  +|..+.                      ...+.++.+      |+++|++.+++.....|=+
T Consensus       111 l~~~~~--~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~  178 (425)
T 3ecd_A          111 MLALAK--PGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIA  178 (425)
T ss_dssp             HHHHCC--TTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred             HHHccC--CCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEE
Confidence            999865  332221                      133455544      9999999998654444433

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=98.22  E-value=1.1e-05  Score=66.22  Aligned_cols=101  Identities=14%  Similarity=0.069  Sum_probs=78.9

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTL  129 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i  129 (174)
                      ..+|+|.+ |++| ..+|++++++.+.++.|+.+       .|...+.+++++.+++++|.+.  .++.++|..|+..++
T Consensus        13 p~~i~l~~-~~~~-~~~~~v~~a~~~~~~~~~~~-------~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~   83 (359)
T 1svv_A           13 PKPYSFVN-DYSV-GMHPKILDLMARDNMTQHAG-------YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC   83 (359)
T ss_dssp             --CEECSC-SCSS-CCCHHHHHHHHHHTTCCCCS-------TTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHH
T ss_pred             CeeEEecC-CCcC-CCCHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHH
Confidence            45789988 7888 67999999999988766543       2567899999999999999654  788899999999999


Q ss_pred             HHhcccCCCCeeE-------------------EEEEEecCCC----HHHHHHHHHHh
Q psy16850        130 FTLGKMIPYFTEL-------------------IYFYRFLANT----TDIIKEASKEL  163 (174)
Q Consensus       130 ~aL~~~~~g~~~s-------------------~~~~~f~HNd----~~~Le~~L~~~  163 (174)
                      .++.+  +|.++.                   +.++.+++++    +++||+.+++.
T Consensus        84 ~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~  138 (359)
T 1svv_A           84 SLALR--PWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHEN  138 (359)
T ss_dssp             HHHCC--TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHS
T ss_pred             HHHhC--CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHH
Confidence            99865  332221                   3566777764    99999999875

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=98.21  E-value=7.1e-06  Score=68.37  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=79.7

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecchhHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSCYVAND  126 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sGy~aN~  126 (174)
                      ++.+|+|++++ .++..+|+|++++.+++++...+.+     .|...+.+++.+.+++++|    .+..++.++|..|+.
T Consensus        31 ~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~  104 (391)
T 4dq6_A           31 TNDLLPMWVAD-MDFKAAPCIIDSLKNRLEQEIYGYT-----TRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAIS  104 (391)
T ss_dssp             CSCSEECCSSS-CSSCCCHHHHHHHHHHHTTCCCCCB-----CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred             CCCceeccccC-CCCCCCHHHHHHHHHHHhCCCCCCC-----CCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHH
Confidence            46789999997 8888899999999998865222211     1456788899999999888    567888899999999


Q ss_pred             HHHHHhcccCCCCeeE-----------------EEEEEecCC---------CHHHHHHHHHH
Q psy16850        127 STLFTLGKMIPYFTEL-----------------IYFYRFLAN---------TTDIIKEASKE  162 (174)
Q Consensus       127 ~~i~aL~~~~~g~~~s-----------------~~~~~f~HN---------d~~~Le~~L~~  162 (174)
                      .++.++.+  +|.+..                 +.++.++++         |+++||+.+++
T Consensus       105 ~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  164 (391)
T 4dq6_A          105 LLINELTK--ANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD  164 (391)
T ss_dssp             HHHHHHSC--TTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT
T ss_pred             HHHHHhCC--CCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc
Confidence            99999965  444332                 356667665         89999998876

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=98.19  E-value=5.4e-06  Score=68.64  Aligned_cols=104  Identities=17%  Similarity=0.185  Sum_probs=76.2

Q ss_pred             eccCcccCCCC---CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcE--EEecchhHHHHHHHHH
Q psy16850         57 YCSNDYLGMSC---HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAG--LVFTSCYVANDSTLFT  131 (174)
Q Consensus        57 f~SndYLGL~~---~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~a--l~f~sGy~aN~~~i~a  131 (174)
                      +.+.+|||...   +|++++++.++++.........   .|...+.+++++.||+++|.+..  +++++|..||..++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~  105 (397)
T 3f9t_A           29 YEDGNIFGSMCSNVLPITRKIVDIFLETNLGDPGLF---KGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRC  105 (397)
T ss_dssp             GGGTCBCSCSCCCCCTHHHHHHHHHTTCCTTSGGGB---HHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCeEEEecCCCcHHHHHHHHHHHhhcCCCcccC---hhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHH
Confidence            44778998885   6778888877776533222221   25578889999999999998766  9999999999999998


Q ss_pred             hccc-----------CCCCeeE-----------------EEEEEecCC-----CHHHHHHHHHHh
Q psy16850        132 LGKM-----------IPYFTEL-----------------IYFYRFLAN-----TTDIIKEASKEL  163 (174)
Q Consensus       132 L~~~-----------~~g~~~s-----------------~~~~~f~HN-----d~~~Le~~L~~~  163 (174)
                      +...           -+|..+.                 +.++.++.+     |+++||+.+++.
T Consensus       106 ~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~  170 (397)
T 3f9t_A          106 IKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDY  170 (397)
T ss_dssp             HHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHS
T ss_pred             HHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhc
Confidence            8642           1244332                 366777777     999999999873

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=98.17  E-value=1.1e-05  Score=67.69  Aligned_cols=110  Identities=8%  Similarity=-0.095  Sum_probs=79.9

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCC--chHHHHHHHHHHHHhCC---CcEEEecchhH
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGN--SLFHEKLEEDVARLHQK---EAGLVFTSCYV  123 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~--~~~~~~LE~~lA~~~g~---e~al~f~sGy~  123 (174)
                      .+|+.+|+|.++++ + ..+|++++++.+.++.++.....+...+|.  .....+|++.||+++|.   +.+++.++|..
T Consensus        24 ~~g~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~  101 (420)
T 1t3i_A           24 INGHPLVYLDNAAT-S-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATE  101 (420)
T ss_dssp             ETTEECEECBTTTC-C-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred             cCCCceEEecCCcc-C-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHH
Confidence            46778999999988 4 567999999999998865433222233333  46789999999999998   77889999999


Q ss_pred             HHHHHHHHh----cccCCCCeeE---------------------EEEEEecC-----CCHHHHHHHHHH
Q psy16850        124 ANDSTLFTL----GKMIPYFTEL---------------------IYFYRFLA-----NTTDIIKEASKE  162 (174)
Q Consensus       124 aN~~~i~aL----~~~~~g~~~s---------------------~~~~~f~H-----Nd~~~Le~~L~~  162 (174)
                      |+..++.++    .+  +|.++.                     +.++.++.     .|+++|++.++.
T Consensus       102 a~~~~~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  168 (420)
T 1t3i_A          102 AINLVAYSWGMNNLK--AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE  168 (420)
T ss_dssp             HHHHHHHHTHHHHCC--TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT
T ss_pred             HHHHHHHHhhhcccC--CCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC
Confidence            999999998    54  222111                     34555555     578888888754

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=98.16  E-value=2.2e-06  Score=74.65  Aligned_cols=81  Identities=20%  Similarity=0.115  Sum_probs=65.4

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG  121 (174)
                      ..+|+++|||++|.   .||.+ ||+|++|+.+++++.. ..   ....+..+.+.+|+++|+++++   .+.+++++||
T Consensus        57 d~~g~~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~-~~---~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sG  131 (451)
T 3oks_A           57 DVDGNRLIDLGSGIAVTTVGNS-APKVVEAVRSQVGDFT-HT---CFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSG  131 (451)
T ss_dssp             ETTSCEEEESSHHHHTCTTCTT-CHHHHHHHHHHHTTCS-CC---TTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSH
T ss_pred             ECCCCEEEEcCCCccccccCCC-CHHHHHHHHHHHHhcc-cc---cCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcH
Confidence            46899999999974   47764 9999999999987753 11   1234677899999999999995   5689999999


Q ss_pred             hHHHHHHHHHhc
Q psy16850        122 YVANDSTLFTLG  133 (174)
Q Consensus       122 y~aN~~~i~aL~  133 (174)
                      ..||..+|.++.
T Consensus       132 seA~~~Alk~a~  143 (451)
T 3oks_A          132 SEAVENAVKIAR  143 (451)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999997654

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=98.16  E-value=1.5e-05  Score=66.31  Aligned_cols=107  Identities=8%  Similarity=-0.012  Sum_probs=75.4

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecchhHH
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSCYVA  124 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sGy~a  124 (174)
                      .+|+++|+|+.++ ..+..+|+|++++.+++++...+.+.+     ...+.+++.+.+++.+|    .+..++.++|..|
T Consensus        24 ~~g~~~i~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a   97 (391)
T 3dzz_A           24 VLKEKELPMWIAE-MDFKIAPEIMASMEEKLKVAAFGYESV-----PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA   97 (391)
T ss_dssp             TCCTTCEECCSSC-CSSCCCHHHHHHHHHHHTTCCCCCBCC-----CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred             ccCCCceeccccC-CCCCCCHHHHHHHHHHHhcCcCCCCCC-----CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence            4678999999886 677789999999999886522222111     24555666666666666    4556777777999


Q ss_pred             HHHHHHHhcccCCCCeeE-----------------EEEEEecC--------CCHHHHHHHHHHh
Q psy16850        125 NDSTLFTLGKMIPYFTEL-----------------IYFYRFLA--------NTTDIIKEASKEL  163 (174)
Q Consensus       125 N~~~i~aL~~~~~g~~~s-----------------~~~~~f~H--------Nd~~~Le~~L~~~  163 (174)
                      +..++.++.+  +|.++.                 +.++.+++        .|+++|++.+++.
T Consensus        98 ~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  159 (391)
T 3dzz_A           98 ISAMVRQFTS--PGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATP  159 (391)
T ss_dssp             HHHHHHHHSC--TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTST
T ss_pred             HHHHHHHhCC--CCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhcc
Confidence            9999999965  444332                 35667776        7999999999743

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=98.15  E-value=6.9e-06  Score=68.46  Aligned_cols=102  Identities=12%  Similarity=-0.043  Sum_probs=76.0

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--------CcEEEecch
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--------EAGLVFTSC  121 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--------e~al~f~sG  121 (174)
                      +|+.+|+|++|++ ++..+|++++++.++++.. .      ..++....+.+|+++||+|++.        +..+++++|
T Consensus        27 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~-~------~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~   98 (370)
T 2z61_A           27 EGKKVIHLEIGEP-DFNTPKPIVDEGIKSLKEG-K------THYTDSRGILELREKISELYKDKYKADIIPDNIIITGGS   98 (370)
T ss_dssp             TTCCCEECCCCSC-SSCCCHHHHHHHHHHHHTT-C------CSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSH
T ss_pred             cCCCEEEccCCCC-CCCCCHHHHHHHHHHHHcC-c------cCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCCh
Confidence            3567899999987 6767899999999988652 1      1122333478899999999852        678999999


Q ss_pred             hHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCCHHHHHHHHHH
Q psy16850        122 YVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       122 y~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd~~~Le~~L~~  162 (174)
                      ..|+..++.++.+  +|.+..                 +.++.++ .|+++|++.+++
T Consensus        99 ~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-~d~~~l~~~l~~  153 (370)
T 2z61_A           99 SLGLFFALSSIID--DGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-FTVESLEEALSD  153 (370)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEEC-SSHHHHHHHCCS
T ss_pred             HHHHHHHHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEeC-CCHHHHHHhccc
Confidence            9999999999865  454332                 2566666 899999998864

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=98.09  E-value=1.2e-05  Score=67.51  Aligned_cols=110  Identities=10%  Similarity=0.089  Sum_probs=74.0

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCC-ccccccccCCchHHHHHHHHHHHHhC----CCcEEEecchhHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTG-AGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSCYVA  124 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~g-s~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sGy~a  124 (174)
                      +++.+|+|+++ +..+..+|++++++.+++++.+.+ ..+-....|...+.+++.+.+++.+|    .+..+++++|..|
T Consensus        33 ~~~~~i~l~~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a  111 (398)
T 3ele_A           33 GKENVYDFSIG-NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS  111 (398)
T ss_dssp             CGGGCEECCSC-CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred             CCCCeEEeecC-CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence            34678999998 788888999999999998774311 11111223444444444444444444    4567777778999


Q ss_pred             HHHHHHHhcccCCC-CeeE-----------------EEEEEecCC------CHHHHHHHHHH
Q psy16850        125 NDSTLFTLGKMIPY-FTEL-----------------IYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       125 N~~~i~aL~~~~~g-~~~s-----------------~~~~~f~HN------d~~~Le~~L~~  162 (174)
                      +..++.++.+  +| .+..                 +.++.++++      |+++|++.++.
T Consensus       112 l~~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  171 (398)
T 3ele_A          112 LSICFRALTS--DAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINA  171 (398)
T ss_dssp             HHHHHHHHCC--STTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCT
T ss_pred             HHHHHHHHcC--CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCc
Confidence            9999999965  56 5443                 356777766      88999888764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=98.07  E-value=5.8e-06  Score=70.33  Aligned_cols=105  Identities=10%  Similarity=0.003  Sum_probs=76.0

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecch
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTSC  121 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~sG  121 (174)
                      +|+.+|+|++|++ .+..+|++++++.++++. +..     .-++...-..+|++.||++++        .+..+++++|
T Consensus        42 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~~-----~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~  114 (437)
T 3g0t_A           42 TGTKFCRMEMGVP-GLPAPQIGIETEIQKLRE-GVA-----SIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGS  114 (437)
T ss_dssp             HTCCCEECCCCSC-CSCCCHHHHHHHHHHHHH-TGG-----GSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred             cCCCEEeccCcCC-CCCCCHHHHHHHHHHHhC-CcC-----cCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCH
Confidence            4678999999987 788899999999998875 110     111222224789999999987        5678888888


Q ss_pred             hHHHHHHHHHhc--ccCCCC--eeE-----------------EEEEEecCC------CHHHHHHHHHHh
Q psy16850        122 YVANDSTLFTLG--KMIPYF--TEL-----------------IYFYRFLAN------TTDIIKEASKEL  163 (174)
Q Consensus       122 y~aN~~~i~aL~--~~~~g~--~~s-----------------~~~~~f~HN------d~~~Le~~L~~~  163 (174)
                      ..++..++.++.  +  +|.  ++.                 +.++.++++      |+++||+.++..
T Consensus       115 t~al~~~~~~l~~~~--~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~  181 (437)
T 3g0t_A          115 MQGCFVSFLVANRTH--KNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTG  181 (437)
T ss_dssp             HHHHHHHHHHHTTSC--TTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhcCC--CCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcC
Confidence            999999999997  4  555  433                 245566654      888999888443

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=98.02  E-value=2e-05  Score=66.32  Aligned_cols=104  Identities=15%  Similarity=0.007  Sum_probs=73.8

Q ss_pred             CeeEEEeccCcc-cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCcEEEecch
Q psy16850         51 EKEVTVYCSNDY-LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEAGLVFTSC  121 (174)
Q Consensus        51 g~~~inf~SndY-LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~al~f~sG  121 (174)
                      |+.+|+|+++.. ..+-.+|++++++.+++++.+.    ... ++....+.+|+++||+|+    |    .+..++.++|
T Consensus        33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~----~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~  107 (407)
T 2zc0_A           33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPK----SVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGG  107 (407)
T ss_dssp             SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGG----GGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHH
T ss_pred             CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhccc----ccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCH
Confidence            457899987653 2233578899999999887531    223 555556789999999999    7    3556666667


Q ss_pred             hHHHHHHHHHhcccCCCCeeE-----------------EEEEEecC----CCHHHHHHHHH
Q psy16850        122 YVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA----NTTDIIKEASK  161 (174)
Q Consensus       122 y~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H----Nd~~~Le~~L~  161 (174)
                      ..|+..++.++.+  +|.++.                 +.++.+++    .|+++||+.++
T Consensus       108 t~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~  166 (407)
T 2zc0_A          108 TGALDLLGRVLID--PGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIK  166 (407)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCCCCHHHHHHHHH
Confidence            9999999999965  444332                 24555555    48999999998

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=98.01  E-value=2.9e-05  Score=64.76  Aligned_cols=104  Identities=13%  Similarity=-0.009  Sum_probs=71.7

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CCC-----cEEEecc
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QKE-----AGLVFTS  120 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~e-----~al~f~s  120 (174)
                      +|+++|+|++|++ .+..+|++++++.+++++.      ....++....+.+|++.||+|+    |.+     ..++.++
T Consensus        23 ~g~~~idl~~~~~-~~~~~~~v~~a~~~~~~~~------~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g   95 (376)
T 2dou_A           23 RGVGLIDLSIGST-DLPPPEAPLKALAEALNDP------TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG   95 (376)
T ss_dssp             TTCCCEECSSCCC-CCCCCHHHHHHHHHHTTCG------GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred             cCCCEEeccCCCC-CCCCCHHHHHHHHHHHhCC------CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence            3567899999987 7777899999998887541      1112233346889999999998    864     4555555


Q ss_pred             hhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecC-----CCHHHHHHHHHH
Q psy16850        121 CYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA-----NTTDIIKEASKE  162 (174)
Q Consensus       121 Gy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H-----Nd~~~Le~~L~~  162 (174)
                      |..++..++.++.+  +|.+..                 +.++.+++     .|+++|++.++.
T Consensus        96 ~~~a~~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  157 (376)
T 2dou_A           96 SQEGLAHLLLALTE--PEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWR  157 (376)
T ss_dssp             HHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHH
T ss_pred             cHHHHHHHHHHhcC--CCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhcc
Confidence            56788888888865  444332                 24556654     478899888863

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=98.00  E-value=1.3e-05  Score=66.53  Aligned_cols=101  Identities=13%  Similarity=-0.014  Sum_probs=73.6

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchhHHHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVANDS  127 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~aN~~  127 (174)
                      +++++|+|++|+. .+..+|++++++.+.++.+. +       + ....+.+|+++||+++|.  +.++++++|..++..
T Consensus        30 ~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~-~-------y-~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~   99 (363)
T 3ffh_A           30 GLTKITKLSSNEN-PLGTSKKVAAIQANSSVETE-I-------Y-PDGWASSLRKEVADFYQLEEEELIFTAGVDELIEL   99 (363)
T ss_dssp             TCSCCEECSSCSC-TTCCCHHHHHHHHTCBSCCC-B-------C-----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred             CCCceEEccCCCC-CCCCCHHHHHHHHHHHHHhh-c-------C-CCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHH
Confidence            3467999999965 56678999888877553211 0       0 123468999999999995  568888889999999


Q ss_pred             HHHHhcccCCCCeeE-----------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        128 TLFTLGKMIPYFTEL-----------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       128 ~i~aL~~~~~g~~~s-----------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                      ++.++.+  +|.+..                 +.++.++++     |+++|++.+..
T Consensus       100 ~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  154 (363)
T 3ffh_A          100 LTRVLLD--TTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDE  154 (363)
T ss_dssp             HHHHHCS--TTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT
T ss_pred             HHHHHcc--CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhccc
Confidence            9999865  454433                 367788888     99999988864

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.97  E-value=2.5e-05  Score=65.89  Aligned_cols=103  Identities=12%  Similarity=-0.022  Sum_probs=73.2

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC----CcEEEecch
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK----EAGLVFTSC  121 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~----e~al~f~sG  121 (174)
                      +|+.+|+|++|++ .+..+|.+++++.++++....+       ++....+.+|++.||+|+    |.    +..+++++|
T Consensus        39 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~  110 (389)
T 1o4s_A           39 KGEDVINLTAGEP-DFPTPEPVVEEAVRFLQKGEVK-------YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA  110 (389)
T ss_dssp             TTCCCEECCCSSC-SSCCCHHHHHHHHHHHTTCCCC-------CCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred             cCCCEEEccCCCC-CCCCCHHHHHHHHHHHhcCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence            4567899999987 5666899999999888653211       222234688999999998    53    567888889


Q ss_pred             hHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC-------CHHHHHHHHHH
Q psy16850        122 YVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN-------TTDIIKEASKE  162 (174)
Q Consensus       122 y~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~  162 (174)
                      ..|+..++.++.+  +|.++.                 +.++.++++       |+++|++.+++
T Consensus       111 t~al~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  173 (389)
T 1o4s_A          111 KQALFNAFMALLD--PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG  173 (389)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred             HHHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence            9999999999865  444332                 245566654       78888887754

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=97.94  E-value=1.3e-05  Score=68.76  Aligned_cols=88  Identities=11%  Similarity=0.017  Sum_probs=67.6

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C-CCcEEEecchhH
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q-KEAGLVFTSCYV  123 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g-~e~al~f~sGy~  123 (174)
                      .+|+++|||++| |.++..+|+|++++.+++++++...+  ..-++....+.+|+++||+|+    + .++.++|++|..
T Consensus        66 ~~~~~~i~l~~g-~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~  142 (449)
T 3qgu_A           66 NPDAKIISLGIG-DTTEPLPKYIADAMAKAAAGLATREG--YSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK  142 (449)
T ss_dssp             CTTCCCEECSSC-CCCCCCCHHHHHHHHHHHHGGGGSCC--CCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred             CCCCCEEEeeCC-CCCCCCCHHHHHHHHHHHHhhccccC--CCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence            357889999998 79999999999999999988763221  122333445899999999998    3 456899999999


Q ss_pred             HHHHHHHHhcccCCCCee
Q psy16850        124 ANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus       124 aN~~~i~aL~~~~~g~~~  141 (174)
                      .++.++.++++  +|..+
T Consensus       143 ~al~~~~~l~~--~gd~V  158 (449)
T 3qgu_A          143 CDIARIQMMFG--SKPTV  158 (449)
T ss_dssp             HHHHHHHHHHC--SSSCE
T ss_pred             HHHHHHHHHhC--CCCEE
Confidence            99988888875  45443

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=97.94  E-value=1.7e-05  Score=65.93  Aligned_cols=85  Identities=15%  Similarity=0.021  Sum_probs=64.6

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchhHHHH
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCYVAND  126 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy~aN~  126 (174)
                      .+|+.+|+|++|+. .+..+|+|++++.+++++.|...    ..++ ...+.+|+++||+++|  .+..+++++|..|+.
T Consensus        23 ~~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~----~~y~-~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~   96 (360)
T 3hdo_A           23 PDIASWIKLNTNEN-PYPPSPEVVKAILEELGPDGAAL----RIYP-SASSQKLREVAGELYGFDPSWIIMANGSDEVLN   96 (360)
T ss_dssp             SCCTTSEECSSCCC-SSCCCHHHHHHHHHHHTTTCGGG----GSCC-CSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred             ccccceeeccCCCC-CCCCCHHHHHHHHHHHhcccchh----hcCC-CCchHHHHHHHHHHhCcCcceEEEcCCHHHHHH
Confidence            35678999999987 78889999999999887643111    1111 1235899999999999  567899999999999


Q ss_pred             HHHHHhcccCCCCee
Q psy16850        127 STLFTLGKMIPYFTE  141 (174)
Q Consensus       127 ~~i~aL~~~~~g~~~  141 (174)
                      .++.++.+  +|.+.
T Consensus        97 ~~~~~l~~--~gd~V  109 (360)
T 3hdo_A           97 NLIRAFAA--EGEEI  109 (360)
T ss_dssp             HHHHHHCC--TTCEE
T ss_pred             HHHHHHhC--CCCEE
Confidence            99999975  45443

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=97.93  E-value=6.6e-05  Score=63.66  Aligned_cols=99  Identities=21%  Similarity=0.127  Sum_probs=70.8

Q ss_pred             ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee
Q psy16850         62 YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus        62 YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~  141 (174)
                      |.-+...+.+.+++.++++.++.+.+.-..-.+..+.+.+||+.||+++|.+++++++||..|+..++.++..  +|.+.
T Consensus        29 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~--~gd~v  106 (398)
T 2rfv_A           29 TPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ--QGDHI  106 (398)
T ss_dssp             CCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEE
T ss_pred             CCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEE
Confidence            5556667777777777776443222221111235688999999999999999999999999999999998865  34332


Q ss_pred             E---------------------EEEEEecCCCHHHHHHHHHH
Q psy16850        142 L---------------------IYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       142 s---------------------~~~~~f~HNd~~~Le~~L~~  162 (174)
                      .                     +.++.++.+|+++|++.++.
T Consensus       107 i~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~  148 (398)
T 2rfv_A          107 VSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRP  148 (398)
T ss_dssp             EEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCT
T ss_pred             EEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCC
Confidence            2                     35677888899999988864

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=97.93  E-value=4.5e-06  Score=73.48  Aligned_cols=99  Identities=25%  Similarity=0.173  Sum_probs=67.5

Q ss_pred             cCcccCCCCCccchHHHHHHH--HHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEE---ecchhHHHHHHHHHhc
Q psy16850         59 SNDYLGMSCHPKVKSAVREAL--EKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLV---FTSCYVANDSTLFTLG  133 (174)
Q Consensus        59 SndYLGL~~~p~v~~a~~~al--~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~---f~sGy~aN~~~i~aL~  133 (174)
                      ..|++...+.++|++++.++.  +.+..+  ++...++.. -+.+||+.+|+++|.+.+++   |+||+.||..++.+++
T Consensus        36 ~~~~~a~~n~~~Vl~A~~~~~~~~~~~~~--~~gy~y~~~-~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all  112 (427)
T 3i16_A           36 ILDDIREFNQLKVLNAFQEERISEAHFTN--SSGYGYGDI-GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL  112 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCGGGSCC--CCTTCTTCH-HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCHHHHHHHHHHhchhHHhcCC--CCCCCCCHH-HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh
Confidence            444555555577777776642  121112  222333333 48999999999999999999   8999999999999987


Q ss_pred             ccCCCCeeE-----------------------------EEEEEecC-----CCHHHHHHHHHH
Q psy16850        134 KMIPYFTEL-----------------------------IYFYRFLA-----NTTDIIKEASKE  162 (174)
Q Consensus       134 ~~~~g~~~s-----------------------------~~~~~f~H-----Nd~~~Le~~L~~  162 (174)
                      +  ||+++.                             +.++.+++     .|+++|++.+++
T Consensus       113 ~--pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~  173 (427)
T 3i16_A          113 R--PGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKE  173 (427)
T ss_dssp             C--TTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHT
T ss_pred             C--CCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhC
Confidence            5  222211                             35556666     699999999984

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=97.89  E-value=0.00011  Score=61.23  Aligned_cols=101  Identities=14%  Similarity=0.052  Sum_probs=69.0

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHH------hC-CCcEEEecchhHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARL------HQ-KEAGLVFTSCYVAND  126 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~------~g-~e~al~f~sGy~aN~  126 (174)
                      .|+|++|++ .+..+|++++++.+++++.+.+  ..  .++... ..+|++.||++      ++ .++.+++++|...++
T Consensus        32 ~idl~~~~~-~~~~~~~v~~a~~~~~~~~~~~--~~--~y~~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al  105 (369)
T 3cq5_A           32 DIRLNTNEN-PYPPSEALVADLVATVDKIATE--LN--RYPERD-AVELRDELAAYITKQTGVAVTRDNLWAANGSNEIL  105 (369)
T ss_dssp             SEECSSCCC-CSCCCHHHHHHHHHHHHHHGGG--TT--SCCCTT-CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             ceeccCCCC-CCCCCHHHHHHHHHHHHhcccc--cc--cCCCcc-HHHHHHHHHHhhhhcccCCCChHhEEECCChHHHH
Confidence            399999998 6778999999999999875321  11  122222 36999999999      44 345677777765544


Q ss_pred             -HHHHHhcccCCCCeeE-----------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        127 -STLFTLGKMIPYFTEL-----------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       127 -~~i~aL~~~~~g~~~s-----------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                       .++.++.+  +|.+..                 +.++.++++     |+++||+.+++
T Consensus       106 ~~~~~~l~~--~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  162 (369)
T 3cq5_A          106 QQLLQAFGG--PGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRA  162 (369)
T ss_dssp             HHHHHHHCS--TTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc
Confidence             77888865  444332                 245566654     68999998876

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=97.88  E-value=4e-05  Score=64.26  Aligned_cols=101  Identities=11%  Similarity=-0.030  Sum_probs=68.4

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--------CCCcEEEecc
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--------QKEAGLVFTS  120 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--------g~e~al~f~s  120 (174)
                      .+|+++|+|++|+ ..+..+|++++++.+++++...+       ++...-+.+|++.||+++        ..+..+++++
T Consensus        28 ~~g~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g   99 (391)
T 3h14_A           28 EAGRRIIHMEVGQ-PGTGAPRGAVEALAKSLETDALG-------YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPG   99 (391)
T ss_dssp             HTTCCCEECCCSS-CSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred             hcCCCeEEccCCC-CCCCCCHHHHHHHHHHHhcCCCC-------CCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecC
Confidence            3567899999986 77888999999999887652111       112222567777777776        3567889999


Q ss_pred             hhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC-------CHHHHHHH
Q psy16850        121 CYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN-------TTDIIKEA  159 (174)
Q Consensus       121 Gy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN-------d~~~Le~~  159 (174)
                      |..|+..++.++.+  +|.++.                 +.++.++++       |+++|++.
T Consensus       100 ~~~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (391)
T 3h14_A          100 SSGGFLLAFTALFD--SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL  160 (391)
T ss_dssp             HHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS
T ss_pred             hHHHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc
Confidence            99999999999975  455443                 255666665       67777654

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=97.88  E-value=6.3e-05  Score=63.97  Aligned_cols=91  Identities=14%  Similarity=0.045  Sum_probs=69.7

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE----
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL----  142 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s----  142 (174)
                      +|++++++.++++....+..+  ...|...+.+++|+.||+++|.+.+++++||..|+..++.++ .+  +|.++.    
T Consensus        15 ~~~~~~a~~~~~~~~~~~~~~--~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~--~gd~Vl~~~~   90 (418)
T 2c81_A           15 SDRTRRKIEEVFQSNRWAISG--YWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIG--EGDEVIVPSL   90 (418)
T ss_dssp             CHHHHHHHHHHHHHTCCSTTS--BCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred             CHHHHHHHHHHHhcCCccccC--cccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence            688999999998875443222  346778889999999999999999999999999999999998 54  444332    


Q ss_pred             -------------EEEEEecCC------CHHHHHHHHHH
Q psy16850        143 -------------IYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       143 -------------~~~~~f~HN------d~~~Le~~L~~  162 (174)
                                   +.++.++++      |+++|++.++.
T Consensus        91 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  129 (418)
T 2c81_A           91 TWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITD  129 (418)
T ss_dssp             SCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT
T ss_pred             ccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC
Confidence                         256666665      78888877653

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=97.88  E-value=2.3e-05  Score=68.10  Aligned_cols=78  Identities=13%  Similarity=0.050  Sum_probs=62.0

Q ss_pred             cCCeeEEEeccCcc---cCCCCCccch-H-HHHH---HHHHcCCCccccccccCCchHHHHHHHHHHHHh---CCCcEEE
Q psy16850         49 DSEKEVTVYCSNDY---LGMSCHPKVK-S-AVRE---ALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH---QKEAGLV  117 (174)
Q Consensus        49 ~~g~~~inf~SndY---LGL~~~p~v~-~-a~~~---al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~---g~e~al~  117 (174)
                      .+|+++|||+++.+   ||.. ||+|+ + |+.+   .+++.+.  .++   .+....+.+|++.|++++   +.+.+++
T Consensus        51 ~~g~~ylD~~~~~~~~~lG~~-~p~v~~~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~la~~la~~~~~~~~~~v~~  124 (449)
T 2cjg_A           51 ITGRRYLDMFTFVASSALGMN-PPALVDDREFHAELMQAALNKP--SNS---DVYSVAMARFVETFARVLGDPALPHLFF  124 (449)
T ss_dssp             TTCCEEEESSHHHHTCSSCBS-CHHHHTCHHHHHHHHHHHTCCC--CTT---TCCCHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred             CCCcEEEEccCCccccCCCCC-CHHHHHHHHHHHHHHHHHhcCC--CCc---ccCCHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            57899999988875   5553 99999 9 9999   7766532  122   246688999999999998   4678899


Q ss_pred             ecchhHHHHHHHHHh
Q psy16850        118 FTSCYVANDSTLFTL  132 (174)
Q Consensus       118 f~sGy~aN~~~i~aL  132 (174)
                      ++||..||..+|.++
T Consensus       125 ~~~gseA~~~aik~a  139 (449)
T 2cjg_A          125 VEGGALAVENALKAA  139 (449)
T ss_dssp             ESSHHHHHHHHHHHH
T ss_pred             eCchHHHHHHHHHHH
Confidence            999999999998754

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=97.87  E-value=2.7e-05  Score=66.97  Aligned_cols=72  Identities=15%  Similarity=0.043  Sum_probs=56.4

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF  130 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~  130 (174)
                      |+.+|||++..+.     |+|++++.++++. |.      ..++..+...+||++||+++|.+.++++++|..||..++.
T Consensus        40 ~~~ylD~~~~~~~-----~~v~~a~~~~l~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~  107 (467)
T 2oqx_A           40 EDVFIDLLTDSGT-----GAVTQSMQAAMMR-GD------EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIP  107 (467)
T ss_dssp             GGCSEECSCCSSC-----SCCCHHHHHHTTS-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHH
T ss_pred             CCeeEecccCCCc-----HHHHHHHHHHhcc-Cc------ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHH
Confidence            4568899876555     9999999888642 21      2355667789999999999999999999999999999999


Q ss_pred             Hhcc
Q psy16850        131 TLGK  134 (174)
Q Consensus       131 aL~~  134 (174)
                      ++.+
T Consensus       108 ~~~~  111 (467)
T 2oqx_A          108 VLIK  111 (467)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8864

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=97.86  E-value=3.7e-05  Score=65.91  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=77.4

Q ss_pred             CCeeEEEeccCccc---CCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-------CCcEEEec
Q psy16850         50 SEKEVTVYCSNDYL---GMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-------KEAGLVFT  119 (174)
Q Consensus        50 ~g~~~inf~SndYL---GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-------~e~al~f~  119 (174)
                      .++.+|||++.++.   .+...|+|++++.+.++.....      -++...-+.+|++.||++++       .+..++++
T Consensus        52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~  125 (427)
T 3dyd_A           52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN------GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTS  125 (427)
T ss_dssp             TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS------SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEES
T ss_pred             CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC------CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEec
Confidence            46789999999976   4677999999999988764221      12223457899999999998       56788889


Q ss_pred             chhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC-------CHHHHHHHHHH
Q psy16850        120 SCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN-------TTDIIKEASKE  162 (174)
Q Consensus       120 sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~  162 (174)
                      +|..|+..++.+|..  +|....                 +.++.++++       |+++|++.+++
T Consensus       126 g~t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  190 (427)
T 3dyd_A          126 GCSQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE  190 (427)
T ss_dssp             SHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT
T ss_pred             CcHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc
Confidence            999999999999975  454432                 245555543       77888877754

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=97.85  E-value=5.9e-05  Score=62.53  Aligned_cols=99  Identities=16%  Similarity=0.072  Sum_probs=70.7

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecchhHHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSCYVANDST  128 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sGy~aN~~~  128 (174)
                      .+.+|+|++|+.. +..+|++++++.++++.+. +.       +. ..+.+|++.||+++|  .+..+++++|..++..+
T Consensus        29 ~~~~i~l~~~~~~-~~~~~~v~~a~~~~~~~~~-~y-------~~-~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~   98 (365)
T 3get_A           29 VKEVIKLASNENP-FGTPPKAIECLRQNANKAH-LY-------PD-DSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFA   98 (365)
T ss_dssp             CSCCEECSSCCCT-TCSCHHHHHHHHHHGGGTT-SC-------CC-TTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred             CCceEEecCCCCC-CCCCHHHHHHHHHHHHhhc-cC-------CC-CChHHHHHHHHHHhCCCcceEEECCCHHHHHHHH
Confidence            3679999999654 5578999999999876321 11       11 123699999999999  55788889999999999


Q ss_pred             HHHhcccCCCCeeE-----------------EEEEEecC-----CCHHHHHHHHH
Q psy16850        129 LFTLGKMIPYFTEL-----------------IYFYRFLA-----NTTDIIKEASK  161 (174)
Q Consensus       129 i~aL~~~~~g~~~s-----------------~~~~~f~H-----Nd~~~Le~~L~  161 (174)
                      +.++.+  +|.+..                 +.++.++.     .|+++|++.++
T Consensus        99 ~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~  151 (365)
T 3get_A           99 IHSKLN--SKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHK  151 (365)
T ss_dssp             HHHHCC--TTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCHHHHHHHHHHTT
T ss_pred             HHHHhC--CCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHHHhC
Confidence            999865  444332                 35666665     45667776665

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=97.85  E-value=4.6e-05  Score=63.88  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=74.1

Q ss_pred             EeccCcccCCCCCccchHHHHHHHHH-cCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-EEecchhHHHHHHH
Q psy16850         56 VYCSNDYLGMSCHPKVKSAVREALEK-FGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-LVFTSCYVANDSTL  129 (174)
Q Consensus        56 nf~SndYLGL~~~p~v~~a~~~al~~-~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-l~f~sGy~aN~~~i  129 (174)
                      .+++++++    +|+|++++.+.+++ ++.+..+++...|.. .+..+|+    .+|+++|.+.+ ++++||..|+..++
T Consensus        28 ~~~~~~~~----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~-~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~~  102 (407)
T 2dkj_A           28 LIASENFV----SKQVREAVGSVLTNKYAEGYPGARYYGGCE-VIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVY  102 (407)
T ss_dssp             CCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHH
T ss_pred             eccCCCCC----CHHHHHHHHhhhhcCcccCCCcccccCCch-HHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHHH
Confidence            45566776    89999999998865 666666666666654 4667775    99999999888 66799999999999


Q ss_pred             HHhcccCCCCeeE--------------------E--EEEEec------CCCHHHHHHHHHHhcc
Q psy16850        130 FTLGKMIPYFTEL--------------------I--YFYRFL------ANTTDIIKEASKELQE  165 (174)
Q Consensus       130 ~aL~~~~~g~~~s--------------------~--~~~~f~------HNd~~~Le~~L~~~~~  165 (174)
                      .++.+  +|.+..                    +  ..+.++      +.|+++|++.+++...
T Consensus       103 ~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~  164 (407)
T 2dkj_A          103 MALME--PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRP  164 (407)
T ss_dssp             HHHCC--TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCC
T ss_pred             HHhcC--CCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCC
Confidence            99864  332221                    1  233342      5789999999985333

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=97.85  E-value=0.00012  Score=62.00  Aligned_cols=112  Identities=12%  Similarity=0.032  Sum_probs=74.2

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCC-CccccccccCCchHHHHHHHHHHHHhCCC---cEEEecchhHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGT-GAGGTRNISGNSLFHEKLEEDVARLHQKE---AGLVFTSCYVAN  125 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~-gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e---~al~f~sGy~aN  125 (174)
                      .|+.+|||+.++|++...++.+.+++.+++.+... +..+-....|...+.+++.+.+....+.+   ..+++++|..|+
T Consensus        36 g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al  115 (418)
T 3rq1_A           36 GRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGI  115 (418)
T ss_dssp             CGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHH
T ss_pred             cCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHH
Confidence            35678999999999988888777777777765331 11111112343344444444444444677   889999999999


Q ss_pred             HHHHHHhcccCCCCeeE-----------------EEEEEec------CCCHHHHHHHHHHh
Q psy16850        126 DSTLFTLGKMIPYFTEL-----------------IYFYRFL------ANTTDIIKEASKEL  163 (174)
Q Consensus       126 ~~~i~aL~~~~~g~~~s-----------------~~~~~f~------HNd~~~Le~~L~~~  163 (174)
                      ..++.++.+  +|..+.                 +.++.++      +.|+++||+.+++.
T Consensus       116 ~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~  174 (418)
T 3rq1_A          116 HHLIHNYTE--PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNEL  174 (418)
T ss_dssp             HHHHHHHSC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHh
Confidence            999999976  454432                 2444444      56899999999874

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=97.85  E-value=7.5e-05  Score=62.39  Aligned_cols=103  Identities=16%  Similarity=0.130  Sum_probs=71.5

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecch
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTSC  121 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~sG  121 (174)
                      +|+.+|+|++|+. .+..+|.+++++.++++. +..      .++...-+.+|++.+|++++        .+..++.++|
T Consensus        28 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~~------~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~   99 (388)
T 1j32_A           28 EGIDVCSFSAGEP-DFNTPKHIVEAAKAALEQ-GKT------RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG   99 (388)
T ss_dssp             TTCCCEECCCSSC-SSCCCHHHHHHHHHHHHT-TCC------SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred             cCCCEEECCCCCC-CCCCCHHHHHHHHHHHhc-CCC------CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence            4677899999987 666789999999988865 211      12222335778888888873        3556777778


Q ss_pred             hHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC-------CHHHHHHHHHH
Q psy16850        122 YVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN-------TTDIIKEASKE  162 (174)
Q Consensus       122 y~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~  162 (174)
                      ..|+..++.++..  +|.+..                 +.++.++++       |+++|++.++.
T Consensus       100 ~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  162 (388)
T 1j32_A          100 KQSIFNLMLAMIE--PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP  162 (388)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT
T ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc
Confidence            9999999999865  454332                 245566653       78888888754

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=97.84  E-value=3.6e-05  Score=65.12  Aligned_cols=104  Identities=15%  Similarity=0.016  Sum_probs=74.6

Q ss_pred             CCeeEEEeccCccc--CCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEec
Q psy16850         50 SEKEVTVYCSNDYL--GMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFT  119 (174)
Q Consensus        50 ~g~~~inf~SndYL--GL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~  119 (174)
                      +|+.+|+|++++..  .+..+|++++++.++++...       ..++....+.+|++.||+|++        .+..++++
T Consensus        36 ~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~  108 (406)
T 1xi9_A           36 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-------NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTA  108 (406)
T ss_dssp             TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred             cCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcC
Confidence            56789999999985  67778999999999886521       112233346789999999883        25788888


Q ss_pred             chhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCC-------CHHHHHHHHHH
Q psy16850        120 SCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLAN-------TTDIIKEASKE  162 (174)
Q Consensus       120 sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~  162 (174)
                      +|..|+..++.++.+  +|..+.                 +.++.++.+       |+++||+.+++
T Consensus       109 g~~~al~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  173 (406)
T 1xi9_A          109 AVTEALQLIFGALLD--PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD  173 (406)
T ss_dssp             HHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT
T ss_pred             ChHHHHHHHHHHhCC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc
Confidence            899999999999865  454332                 244444442       78999988865

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.84  E-value=1.1e-05  Score=68.49  Aligned_cols=101  Identities=10%  Similarity=-0.056  Sum_probs=72.1

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--------CcEEEecch
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--------EAGLVFTSC  121 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--------e~al~f~sG  121 (174)
                      +|+.+|+|++|++ ++..+|++++++ ++++. +.      ..++....+.+|++.||+|++.        +.++++++|
T Consensus        41 ~g~~~i~l~~~~~-~~~~~~~v~~a~-~~l~~-~~------~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~  111 (409)
T 2gb3_A           41 RGVRIHHLNIGQP-DLKTPEVFFERI-YENKP-EV------VYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG  111 (409)
T ss_dssp             TTCEEEECSSCCC-CSCCCTHHHHHH-HHTCC-SS------CCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred             cCCCEEeccCCCC-CCCCCHHHHHHH-HHHhc-CC------CCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence            5678999999998 777789999998 87643 11      1122233468899999999863        678999999


Q ss_pred             hHHHHHHHHHhcccCCCCeeE-----------------EEEEEecCCC------HHHHHHHHH
Q psy16850        122 YVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLANT------TDIIKEASK  161 (174)
Q Consensus       122 y~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~HNd------~~~Le~~L~  161 (174)
                      ..|+..++.++.+  +|..+.                 +.++.+++++      +++||+.+.
T Consensus       112 t~a~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~  172 (409)
T 2gb3_A          112 SEAILFSFAVIAN--PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFIN  172 (409)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCC
T ss_pred             HHHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHhhC
Confidence            9999999999865  454432                 2456666653      566666554

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=97.84  E-value=2.4e-05  Score=65.33  Aligned_cols=84  Identities=12%  Similarity=-0.113  Sum_probs=63.3

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE----
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL----  142 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s----  142 (174)
                      +|++++++.++++...         .+..+.+.+||+.||+++|.+.+++++||..||..++.++ .+  +|.+..    
T Consensus        16 ~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~--~gd~Vi~~~~   84 (373)
T 3frk_A           16 EYEIKFKFEEIYKRNW---------FILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIG--FGDEVIVPSN   84 (373)
T ss_dssp             HHHHHHHHHHHHHHTC---------CSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEETT
T ss_pred             CHHHHHHHHHHHHCCC---------ccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence            3556666666665421         2456789999999999999999999999999999999998 54  444332    


Q ss_pred             -------------EEEEEecCC------CHHHHHHHHHH
Q psy16850        143 -------------IYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       143 -------------~~~~~f~HN------d~~~Le~~L~~  162 (174)
                                   +.++.++++      |+++||+.+.+
T Consensus        85 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~  123 (373)
T 3frk_A           85 TFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE  123 (373)
T ss_dssp             SCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCT
T ss_pred             CcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCC
Confidence                         366777776      88888887754

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=97.82  E-value=7.1e-05  Score=62.77  Aligned_cols=99  Identities=14%  Similarity=0.070  Sum_probs=70.8

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCcEEEecchhH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEAGLVFTSCYV  123 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~al~f~sGy~  123 (174)
                      +.+|+|++++ +++..+|++++++.++++....+       ++  ..+.+|++.||+++    |    .+..++.++|..
T Consensus        31 ~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~-------y~--~~~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~  100 (399)
T 1c7n_A           31 NEVVPLSVAD-MEFKNPPELIEGLKKYLDETVLG-------YT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVP  100 (399)
T ss_dssp             TTCCCCCSSS-CSSCCCHHHHHHHHHHHHHCCCS-------SB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred             CCceeeeecC-CCCCCCHHHHHHHHHHHhcCCCC-------CC--CCcHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHH
Confidence            3689998886 88888999999999988652111       11  12678888888885    5    456777788899


Q ss_pred             HHHHHHHHhcccCCCCeeE-----------------EEEEEecC--------CCHHHHHHHHHH
Q psy16850        124 ANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA--------NTTDIIKEASKE  162 (174)
Q Consensus       124 aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H--------Nd~~~Le~~L~~  162 (174)
                      |+..++.++.+  +|.++.                 +.++.+++        .|+++||+.+++
T Consensus       101 a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~  162 (399)
T 1c7n_A          101 AVFNAVREFTK--PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD  162 (399)
T ss_dssp             HHHHHHHHHCC--TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC
T ss_pred             HHHHHHHHhcC--CCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc
Confidence            99999999975  343322                 24555554        589999999873

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=97.81  E-value=0.0001  Score=61.58  Aligned_cols=107  Identities=11%  Similarity=-0.071  Sum_probs=71.3

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC-----CC-cEEEecchh
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ-----KE-AGLVFTSCY  122 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g-----~e-~al~f~sGy  122 (174)
                      .+|+++|+|++|+ ..+..+|.+++++.+.++...    +-....|...+.+++.+.+++++|     .+ ..++.++|.
T Consensus        27 ~~g~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~----~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~  101 (396)
T 3jtx_A           27 PEGMEAVPLHIGE-PKHPTPKVITDALTASLHELE----KYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSR  101 (396)
T ss_dssp             CTTCCCEECSCCS-CCSCCCHHHHHHHHHTGGGGG----SCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHH
T ss_pred             ccCCCeEEeCCcC-CCCCCCHHHHHHHHHHhhhcc----CCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcH
Confidence            3678899999998 788889999999988764211    111223445555555555555556     34 677777778


Q ss_pred             HHHHHHHHHhcccCCC-----CeeE-----------------EEEEEecCC------CHHHHHHHHHH
Q psy16850        123 VANDSTLFTLGKMIPY-----FTEL-----------------IYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g-----~~~s-----------------~~~~~f~HN------d~~~Le~~L~~  162 (174)
                      .++..++.++.+  +|     ..+.                 +.++.++.+      |+++|++.+++
T Consensus       102 ~al~~~~~~~~~--~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~  167 (396)
T 3jtx_A          102 EALFSFVQTVLN--PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWK  167 (396)
T ss_dssp             HHHHHHHHHHCC--C---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH
T ss_pred             HHHHHHHHHHhC--CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc
Confidence            888888988865  43     3332                 245555542      78889888876

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=97.80  E-value=0.00013  Score=59.84  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=68.9

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFT  131 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~a  131 (174)
                      +.+|+|++|-+..  ..|++++++.++.    .+    ...++..+.+.+||++||+++|.+.++++++|..||..++.+
T Consensus         3 ~~~i~~~~~~~~~--p~~~~~~a~~~~~----~~----~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~   72 (347)
T 1jg8_A            3 HMMIDLRSDTVTK--PTEEMRKAMAQAE----VG----DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMA   72 (347)
T ss_dssp             --CEECSCGGGCC--CCHHHHHHHHTCC----CC----CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred             ceEEEeccccCCC--CCHHHHHHHhcCC----CC----CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHH
Confidence            3568999998865  4566666664431    11    123455677899999999999999999999999999999988


Q ss_pred             hcccCCCCeeE--------------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        132 LGKMIPYFTEL--------------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       132 L~~~~~g~~~s--------------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                      +.+  +|.++.                    +.++.+ ++     |+++|++.+++
T Consensus        73 ~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~  125 (347)
T 1jg8_A           73 HTQ--RGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRP  125 (347)
T ss_dssp             HCC--TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCC
T ss_pred             hcC--CCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhcc
Confidence            865  333221                    244444 43     88888888764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=97.80  E-value=1.1e-05  Score=76.74  Aligned_cols=80  Identities=10%  Similarity=-0.070  Sum_probs=68.2

Q ss_pred             cCCe----eEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEe
Q psy16850         49 DSEK----EVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVF  118 (174)
Q Consensus        49 ~~g~----~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f  118 (174)
                      .+|+    ++|||+|   +++||.+.||+|.+|+.+.+++++..+    ....+++...+|+++|+++++   .+.++++
T Consensus       373 ~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~----~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~  448 (831)
T 4a0g_A          373 ASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVM----FPENVYEPALKCAELLLDGVGKGWASRVYFS  448 (831)
T ss_dssp             HHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCC----CTTEECHHHHHHHHHHHHTTTTTTCCEEEEE
T ss_pred             CCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccc----ccccCCHHHHHHHHHHHHhCCCCCCCEEEEC
Confidence            4677    8999998   699999889999999999999988542    112357899999999999998   5689999


Q ss_pred             cchhHHHHHHHHHh
Q psy16850        119 TSCYVANDSTLFTL  132 (174)
Q Consensus       119 ~sGy~aN~~~i~aL  132 (174)
                      +||..||-+.|...
T Consensus       449 ~SGSeA~E~AlK~A  462 (831)
T 4a0g_A          449 DNGSTAIEIALKMA  462 (831)
T ss_dssp             SSHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHH
Confidence            99999999999865

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=97.80  E-value=0.00014  Score=61.11  Aligned_cols=86  Identities=13%  Similarity=0.039  Sum_probs=66.0

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc-----ccCCCCeeE
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG-----KMIPYFTEL  142 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~-----~~~~g~~~s  142 (174)
                      +|++++++.++++...         .+....+.+||+.||+++|.+.+++++||..||..++.++.     +.-+|.++.
T Consensus        14 ~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi   84 (390)
T 3b8x_A           14 DDLEYKAIQSVLDSKM---------FTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEII   84 (390)
T ss_dssp             CHHHHHHHHHHHHHTC---------CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEE
T ss_pred             CHHHHHHHHHHHHcCC---------CCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEE
Confidence            7889999888887621         22357899999999999999999999999999999999982     111444332


Q ss_pred             -----------------EEEEEecCC------CHHHHHHHHHH
Q psy16850        143 -----------------IYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       143 -----------------~~~~~f~HN------d~~~Le~~L~~  162 (174)
                                       +.++.++++      |+++|++.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  127 (390)
T 3b8x_A           85 VPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD  127 (390)
T ss_dssp             EESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc
Confidence                             356677776      88999888754

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=97.79  E-value=5.8e-05  Score=66.37  Aligned_cols=88  Identities=20%  Similarity=0.175  Sum_probs=62.5

Q ss_pred             ccchHHHHHHHH---HcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEE---ecchhHHHHHHHHHhcccCCCCeeE
Q psy16850         69 PKVKSAVREALE---KFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLV---FTSCYVANDSTLFTLGKMIPYFTEL  142 (174)
Q Consensus        69 p~v~~a~~~al~---~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~---f~sGy~aN~~~i~aL~~~~~g~~~s  142 (174)
                      ++|++++.++..   .++-   .+...++.. -+++||+.+|+++|.|++++   |+||++||..++.++++  ||+++.
T Consensus        47 ~~Vl~a~~~~~~~~~~~~~---~~gy~Y~~~-g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~--pGD~Vl  120 (427)
T 3hvy_A           47 LKVLKAFQEERISESHFTN---SSGYGYNDI-GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLR--PNDTMM  120 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCC---CCTTCTTCH-HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCC--TTCEEE
T ss_pred             HHHHHHHHHHHHHHHhccc---CcCCCCCch-hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcC--CCCEEE
Confidence            677777766421   1221   122223333 48999999999999999999   89999999999999876  232211


Q ss_pred             -----------------------------EEEEEecC----CCHHHHHHHHHH
Q psy16850        143 -----------------------------IYFYRFLA----NTTDIIKEASKE  162 (174)
Q Consensus       143 -----------------------------~~~~~f~H----Nd~~~Le~~L~~  162 (174)
                                                   +.++.+++    .|+++|++.+++
T Consensus       121 ~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~  173 (427)
T 3hvy_A          121 SICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKK  173 (427)
T ss_dssp             ECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHH
T ss_pred             EeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhC
Confidence                                         45566677    899999999985

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=97.78  E-value=3.5e-05  Score=64.78  Aligned_cols=78  Identities=18%  Similarity=0.031  Sum_probs=58.5

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------C-CcEEEecc
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------K-EAGLVFTS  120 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~-e~al~f~s  120 (174)
                      .+..+|+|++++ .++..+|+|++++.++++....      ..++...-+.+|++.||++++        . +..++.++
T Consensus        21 ~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g   93 (410)
T 3e2y_A           21 ADPSVVNLGQGF-PDISPPSYVKEELSKAAFIDNM------NQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVG   93 (410)
T ss_dssp             TSTTSEECSSCC-CCSCCCHHHHHHHHHHHTCGGG------GSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESH
T ss_pred             cCCCeEEecCCC-CCCCCCHHHHHHHHHHHhCccc------cCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence            345789999997 7888899999999998864311      111222225788888998887        2 67888888


Q ss_pred             hhHHHHHHHHHhcc
Q psy16850        121 CYVANDSTLFTLGK  134 (174)
Q Consensus       121 Gy~aN~~~i~aL~~  134 (174)
                      |..++..++.++.+
T Consensus        94 ~~~a~~~~~~~~~~  107 (410)
T 3e2y_A           94 AYGSLFNSIQGLVD  107 (410)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHhcC
Confidence            99999999999975

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=97.76  E-value=0.00014  Score=62.30  Aligned_cols=91  Identities=20%  Similarity=0.081  Sum_probs=66.4

Q ss_pred             CCccchHHHHHHHHHcCCCcc---ccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-
Q psy16850         67 CHPKVKSAVREALEKFGTGAG---GTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-  142 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~gs~---~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-  142 (174)
                      ..+.+.+++.++++.+..+.+   -+|  . ..+.+++||+.||+++|.+++++|++|..|+..++.++.+  +|.+.. 
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~-~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~--~gd~Vl~  106 (404)
T 1e5e_A           32 TSTFVFDNCQQGGNRFAGQESGYIYTR--L-GNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILK--AGDHLIS  106 (404)
T ss_dssp             CSBCCCSSHHHHHHHHTTSSCSCCBTT--T-CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEE
T ss_pred             CCccccCCHHHHHHhhcCCcCCccccC--C-cChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhC--CCCEEEE
Confidence            455566777776654432211   122  2 2577889999999999999999999999999999998865  443322 


Q ss_pred             --------------------EEEEEecCCCHHHHHHHHHH
Q psy16850        143 --------------------IYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       143 --------------------~~~~~f~HNd~~~Le~~L~~  162 (174)
                                          +.++.++++|+++|++.++.
T Consensus       107 ~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~  146 (404)
T 1e5e_A          107 DECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKP  146 (404)
T ss_dssp             ESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCT
T ss_pred             eCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC
Confidence                                36778889999999988864

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=97.74  E-value=6.6e-05  Score=63.59  Aligned_cols=84  Identities=7%  Similarity=-0.046  Sum_probs=59.3

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC-----CcEEEec
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK-----EAGLVFT  119 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~-----e~al~f~  119 (174)
                      .+|+++|+|++++ ..+..+|.+++++.+++++.+..      .++...-+.+|++.||+|+    |.     +..++++
T Consensus        34 ~~g~~~idl~~g~-~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~  106 (412)
T 2x5d_A           34 RRGEDIIDLSMGN-PDGPTPPHIVEKLCTVAQREDTH------GYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTI  106 (412)
T ss_dssp             HTTCCCEECSSCC-CCSCCCHHHHHHHHHTC---------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred             hcCCCEEecCCCC-CCCCCCHHHHHHHHHHHhCCCCC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcC
Confidence            3567899999987 46778899999998877653211      1222234678999999998    73     4789999


Q ss_pred             chhHHHHHHHHHhcccCCCCee
Q psy16850        120 SCYVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus       120 sGy~aN~~~i~aL~~~~~g~~~  141 (174)
                      +|..|+..++.++.+  +|.++
T Consensus       107 g~~~a~~~~~~~~~~--~gd~V  126 (412)
T 2x5d_A          107 GSKEGLAHLMLATLD--HGDTI  126 (412)
T ss_dssp             CHHHHHHHHHHHHCC--TTCEE
T ss_pred             ChHHHHHHHHHHhCC--CCCEE
Confidence            999999999999865  45443

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=97.74  E-value=7.3e-05  Score=65.87  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=75.6

Q ss_pred             EEEe-ccCcccCCCCCccchHHHHHHHHH-cCCCccccccccCCchHHHHHH----HHHHHHhCCC-----cEEEecchh
Q psy16850         54 VTVY-CSNDYLGMSCHPKVKSAVREALEK-FGTGAGGTRNISGNSLFHEKLE----EDVARLHQKE-----AGLVFTSCY  122 (174)
Q Consensus        54 ~inf-~SndYLGL~~~p~v~~a~~~al~~-~G~gs~~Sr~~~G~~~~~~~LE----~~lA~~~g~e-----~al~f~sGy  122 (174)
                      .|+| +|.+|+    +|.|++++.+++.. |..|..++|...|. ....++|    +.+++++|.+     ..++++||.
T Consensus        46 ~i~L~a~e~~~----~~~V~eA~~~~l~~~~~~g~p~~~~y~~~-~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs  120 (483)
T 1rv3_A           46 GLELIASENFA----SRAVLEALGSCLNNKYSLGYPGQRYYGGT-EHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS  120 (483)
T ss_dssp             SEECCTTCCCC----CHHHHHHHTSGGGTCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred             CeEEEcCCCCC----CHHHHHHHHHHHhccCcccCCCccccCcc-hhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH
Confidence            3444 566663    78899998888764 54466677765553 5567777    8999999987     359999999


Q ss_pred             HHHHHHHHHhcccCCCCeeE---------------------------EEEEEec------CCCHHHHHHHHHHhccccc
Q psy16850        123 VANDSTLFTLGKMIPYFTEL---------------------------IYFYRFL------ANTTDIIKEASKELQEDMI  168 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~~s---------------------------~~~~~f~------HNd~~~Le~~L~~~~~~~~  168 (174)
                      .||..++.+|.+  ||+++.                           ...+.++      +-|+++||+.+.+..+..|
T Consensus       121 ~an~~~~~all~--pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklI  197 (483)
T 1rv3_A          121 PANFAVYTALVE--PHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLI  197 (483)
T ss_dssp             HHHHHHHHHHTC--TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEE
T ss_pred             HHHHHHHHHhcC--CCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEE
Confidence            999999999875  444322                           2344553      3589999999985444443

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=97.72  E-value=0.00025  Score=60.38  Aligned_cols=104  Identities=13%  Similarity=0.005  Sum_probs=69.4

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecchhHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSCYVAND  126 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sGy~aN~  126 (174)
                      |+.+|+|+..| ..+..+|+|++++.+.+++...+.+.     ....+.+++.+.+++.+|    .+..++.++|-.||.
T Consensus        60 g~~~i~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~  133 (421)
T 3l8a_A           60 NPELLQMWVAD-MDFLPVPEIKEAIINYGREHIFGYNY-----FNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAIS  133 (421)
T ss_dssp             CTTCEECCSSC-CCSCCCHHHHHHHHHHHHHCCSSCBC-----CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred             CCCeeecccCC-CCCCCCHHHHHHHHHHHhcCCcCCCC-----CCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHH
Confidence            78999998886 67778999999999988762222211     124566666666666666    333555555555999


Q ss_pred             HHHHHhcccCCCCeeE-----------------EEEEEecC--------CCHHHHHHHHHH
Q psy16850        127 STLFTLGKMIPYFTEL-----------------IYFYRFLA--------NTTDIIKEASKE  162 (174)
Q Consensus       127 ~~i~aL~~~~~g~~~s-----------------~~~~~f~H--------Nd~~~Le~~L~~  162 (174)
                      .++.++.+  +|.++.                 ..++.++.        .|+++||+.+++
T Consensus       134 ~a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~  192 (421)
T 3l8a_A          134 IALQAFSE--KGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID  192 (421)
T ss_dssp             HHHHHHSC--TEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH
T ss_pred             HHHHHhcC--CCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc
Confidence            99999865  343322                 23444432        399999999985

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=97.72  E-value=0.00013  Score=61.11  Aligned_cols=107  Identities=11%  Similarity=-0.007  Sum_probs=73.6

Q ss_pred             CeeEEEeccCcccCCC----CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CC----CcEEE--ec
Q psy16850         51 EKEVTVYCSNDYLGMS----CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QK----EAGLV--FT  119 (174)
Q Consensus        51 g~~~inf~SndYLGL~----~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~----e~al~--f~  119 (174)
                      +..+|||++++|++..    .+|.+++++.+.++. +     ...-++...-+.+|+++||+++ +.    +..++  ++
T Consensus        25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-----~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~   98 (394)
T 2ay1_A           25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-E-----TTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATV   98 (394)
T ss_dssp             CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH-C-----CCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEE
T ss_pred             CccccccccceeeCCCCCccCcHHHHHHHHHhcCC-c-----ccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecC
Confidence            3457999999997653    378888888887765 2     1111233344789999999997 53    45666  88


Q ss_pred             chhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecC---C----CHHHHHHHHHHh
Q psy16850        120 SCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA---N----TTDIIKEASKEL  163 (174)
Q Consensus       120 sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H---N----d~~~Le~~L~~~  163 (174)
                      +|..|+..++.++....+|.+..                 +.++.+++   +    |+++|++.+++.
T Consensus        99 g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~  166 (394)
T 2ay1_A           99 GGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA  166 (394)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC
T ss_pred             CchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhC
Confidence            89999998887775312444332                 24566666   3    899999999864

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=97.70  E-value=2.4e-05  Score=65.14  Aligned_cols=101  Identities=12%  Similarity=0.037  Sum_probs=73.1

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchhHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCYVANDS  127 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy~aN~~  127 (174)
                      +..+.+|..+||+++..++.  +++.+++...-.       .+|...-+.+|++.||++++   .+.++++++|..|+..
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~   96 (375)
T 3op7_A           26 GVSISSLTLEELFALSGTNP--EDFYKKLQGTKL-------NYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLL   96 (375)
T ss_dssp             CCSCCCCCHHHHHHHHTCCH--HHHHHHHHTSCC-------SSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHH
T ss_pred             cCCCCCccHHHHHhhcccch--HHHHHHHhcCCc-------CCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHH
Confidence            34566788999999998775  666666543222       23334447899999999974   4789999999999999


Q ss_pred             HHHHhcccCCCCeeE-----------------EEEEEecCC-------CHHHHHHHHHH
Q psy16850        128 TLFTLGKMIPYFTEL-----------------IYFYRFLAN-------TTDIIKEASKE  162 (174)
Q Consensus       128 ~i~aL~~~~~g~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~  162 (174)
                      ++.++.+  +|.++.                 +.++.++++       |+++||+.++.
T Consensus        97 ~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  153 (375)
T 3op7_A           97 VLYSLIE--PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP  153 (375)
T ss_dssp             HHHHHCC--TTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred             HHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc
Confidence            9999976  454432                 255566654       89999988864

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=97.70  E-value=0.00017  Score=63.74  Aligned_cols=139  Identities=9%  Similarity=-0.019  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHh-----CCCCceeeecccccCCCCceeeecCC---------------eeEEEeccCcccCCCCCccchHH
Q psy16850         15 FHEQIMKKKRD-----HSYRVFKKVNRLATNFPAAYEYTDSE---------------KEVTVYCSNDYLGMSCHPKVKSA   74 (174)
Q Consensus        15 ~~~~L~~~~~~-----g~~r~~~~~~~~~~~~~~~~~~~~~g---------------~~~inf~SndYLGL~~~p~v~~a   74 (174)
                      +..+.++++++     |.++..+++....+...     ...+               ..+|+|.++   +-...++++++
T Consensus        43 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~iG~~~-----~~~~~p~~~~~~~~~~~~~p~~i~~~~~---~~~~p~~~~~~  114 (500)
T 3tcm_A           43 IVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQ-----SLGQQPVTFFREVLALCDHPDLLQREEI---KTLFSADSISR  114 (500)
T ss_dssp             HHHHHHHHHHHHHHSTTSSSSSSCEECSSCCGG-----GTTCCCCHHHHHHHHHHHSGGGGGCTTH---HHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCCHHHhhhhcCcChh-----hcCCCCCcHHHHHHHhhcCcccccCCCC---cccCCHHHHHH
Confidence            33455666667     88888787765443211     1111               223333332   11124458888


Q ss_pred             HHHHHHHc-CCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecchhHHHHHHHHHhc-ccCCCCeeE------
Q psy16850         75 VREALEKF-GTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSCYVANDSTLFTLG-KMIPYFTEL------  142 (174)
Q Consensus        75 ~~~al~~~-G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sGy~aN~~~i~aL~-~~~~g~~~s------  142 (174)
                      +.++++.+ |.+..+.....|...+.+++.+.+.++.|    .+..+++++|..++..++.+|. +  +|..+.      
T Consensus       115 a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~gd~Vlv~~p~y  192 (500)
T 3tcm_A          115 AKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN--EKDGILVPIPQY  192 (500)
T ss_dssp             HHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS--TTEEEEEEESCC
T ss_pred             HHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC--CCCEEEEeCCCc
Confidence            88888776 33444445556666666666666665544    5678888888899999999986 4  444332      


Q ss_pred             -----------EEEEEec-------CCCHHHHHHHHHHh
Q psy16850        143 -----------IYFYRFL-------ANTTDIIKEASKEL  163 (174)
Q Consensus       143 -----------~~~~~f~-------HNd~~~Le~~L~~~  163 (174)
                                 +.++.|+       +.|+++||+.|++.
T Consensus       193 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~  231 (500)
T 3tcm_A          193 PLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDA  231 (500)
T ss_dssp             THHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHH
T ss_pred             HhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHH
Confidence                       3566666       89999999999985

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=97.70  E-value=0.0001  Score=62.32  Aligned_cols=103  Identities=13%  Similarity=0.029  Sum_probs=73.2

Q ss_pred             eeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------------CCc
Q psy16850         52 KEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------------KEA  114 (174)
Q Consensus        52 ~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------------~e~  114 (174)
                      +.+|+|++++   |..+..+|++++++.++++....      ..++....+.+|++.||+|++              .+.
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~  106 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQEC------NGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN  106 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCS------SSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCcc------CCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcce
Confidence            4589999998   56888899999999998875311      112333457899999999998              456


Q ss_pred             EEEecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecC-------CCHHHHHHHHHH
Q psy16850        115 GLVFTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA-------NTTDIIKEASKE  162 (174)
Q Consensus       115 al~f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H-------Nd~~~Le~~L~~  162 (174)
                      .++.++|..|+..++.++.+  +|.++.                 +.++.+++       .|+++|++.++.
T Consensus       107 v~~~~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  176 (416)
T 1bw0_A          107 VVLCSGGSHGILMAITAICD--AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD  176 (416)
T ss_dssp             EEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred             EEEeCChHHHHHHHHHHhCC--CCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhcc
Confidence            77777778888889988865  444332                 23444443       478888888764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=97.69  E-value=0.00025  Score=59.29  Aligned_cols=86  Identities=15%  Similarity=0.072  Sum_probs=63.9

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE----
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL----  142 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s----  142 (174)
                      .|++++++.++++. |.      ...+....+.+||+.||+|+|.+.+++++||..|+..++.++ .+  +|.++.    
T Consensus        16 ~~~~~~a~~~~l~~-~~------~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~--~gd~Vi~~~~   86 (388)
T 1b9h_A           16 DDAERNGLVRALEQ-GQ------WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVG--PGTEVIVPAF   86 (388)
T ss_dssp             CHHHHHHHHHHHHT-SC------CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred             CHHHHHHHHHHHHc-CC------eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence            47888888888865 21      112345779999999999999999999999999999999998 54  444332    


Q ss_pred             -------------EEEEEecCC------CHHHHHHHHHH
Q psy16850        143 -------------IYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       143 -------------~~~~~f~HN------d~~~Le~~L~~  162 (174)
                                   +.++.++++      |+++||+.+..
T Consensus        87 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~  125 (388)
T 1b9h_A           87 TFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP  125 (388)
T ss_dssp             SCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT
T ss_pred             ccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc
Confidence                         245556553      78888888753

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=97.68  E-value=0.00018  Score=61.66  Aligned_cols=57  Identities=14%  Similarity=-0.043  Sum_probs=44.6

Q ss_pred             chHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         71 VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        71 v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      +.+++.+++. .+     .. ..+....+.+||++||+++|.+.++++++|..|+..++.++.+
T Consensus        56 ~~~~~~~a~~-~~-----~~-~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~  112 (456)
T 2ez2_A           56 MSDKQWAGMM-MG-----DE-AYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIK  112 (456)
T ss_dssp             CCHHHHHHHT-TC-----CC-CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHhh-cc-----hh-hcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCC
Confidence            4566666664 12     11 2335677999999999999999999999999999999999865

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=97.68  E-value=0.00027  Score=59.02  Aligned_cols=107  Identities=12%  Similarity=-0.096  Sum_probs=72.3

Q ss_pred             CeeEEEeccCcccCCC----CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh---C-----CCcEEE-
Q psy16850         51 EKEVTVYCSNDYLGMS----CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH---Q-----KEAGLV-  117 (174)
Q Consensus        51 g~~~inf~SndYLGL~----~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~---g-----~e~al~-  117 (174)
                      +..+|||++++|++..    .+|++++++.+.+++...      .-++...-+.+|.++||+++   +     .+..++ 
T Consensus        25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~   98 (396)
T 2q7w_A           25 RPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT------KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA   98 (396)
T ss_dssp             ---CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC------CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred             CCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc------cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence            4568999999998764    368888888887765311      11233344789999999998   2     345565 


Q ss_pred             -ecchhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecC---C----CHHHHHHHHHHh
Q psy16850        118 -FTSCYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA---N----TTDIIKEASKEL  163 (174)
Q Consensus       118 -f~sGy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H---N----d~~~Le~~L~~~  163 (174)
                       +++|..|+..++.++....+|.+..                 +.++.+++   +    |+++|++.+++.
T Consensus        99 ~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~  169 (396)
T 2q7w_A           99 QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA  169 (396)
T ss_dssp             EESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred             ecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC
Confidence             8889999988887664212454332                 35667777   4    899999999764

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=97.67  E-value=0.00025  Score=58.88  Aligned_cols=109  Identities=7%  Similarity=-0.097  Sum_probs=73.2

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccc--cCCchHHHHHHHHHHHHhCC---CcEEEecchhHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNI--SGNSLFHEKLEEDVARLHQK---EAGLVFTSCYVA  124 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~--~G~~~~~~~LE~~lA~~~g~---e~al~f~sGy~a  124 (174)
                      +|+.+++|..++. | ..+|++++++.+.++++......+...  .+....+.+|++.||+++|.   +..++.++|..|
T Consensus        20 ~g~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a   97 (406)
T 1kmj_A           20 NGLPLAYLDSAAS-A-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEG   97 (406)
T ss_dssp             TTEECEECCTTTC-C-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred             CCCceEEecCCcc-C-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHH
Confidence            5666777766655 3 368899999999998764322211111  22457789999999999998   455666677799


Q ss_pred             HHHHHHHh----cccCCCCeeE---------------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        125 NDSTLFTL----GKMIPYFTEL---------------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       125 N~~~i~aL----~~~~~g~~~s---------------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                      +..++.++    .+  +|.++.                     +.++.++++     |+++||+.+.+
T Consensus        98 ~~~~~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  163 (406)
T 1kmj_A           98 INLVANSWGNSNVR--AGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE  163 (406)
T ss_dssp             HHHHHHHTHHHHCC--TTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT
T ss_pred             HHHHHHHhhhhcCC--CCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence            99999998    44  222211                     355566653     78888888754

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=97.66  E-value=5.2e-05  Score=66.18  Aligned_cols=62  Identities=27%  Similarity=0.219  Sum_probs=44.7

Q ss_pred             ccchHHHHHHH---HHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEE---ecchhHHHHHHHHHhcc
Q psy16850         69 PKVKSAVREAL---EKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLV---FTSCYVANDSTLFTLGK  134 (174)
Q Consensus        69 p~v~~a~~~al---~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~---f~sGy~aN~~~i~aL~~  134 (174)
                      ++|++++.++.   ..++.   .+-..++.. -+++||+.+|+++|.|++++   |+||+.||..++.++.+
T Consensus        32 ~~vl~a~~~~~~~~~~~~~---~~~~~y~~~-~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~   99 (409)
T 3jzl_A           32 AKVLDAFQENKVSDFHFHP---STGYGYDDE-GRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILR   99 (409)
T ss_dssp             HHHHHHHHHTTCCGGGGCC---CCTTCTTCH-HHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhhhhhhccCC---CcCCCCChh-HHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcC
Confidence            56666666542   11221   222233333 48999999999999999999   89999999999999875

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.64  E-value=0.00019  Score=60.14  Aligned_cols=99  Identities=7%  Similarity=0.011  Sum_probs=66.1

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHH-HHHHHHHHh----C----CCcEEEecchh
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEK-LEEDVARLH----Q----KEAGLVFTSCY  122 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~-LE~~lA~~~----g----~e~al~f~sGy  122 (174)
                      +++|+|+++++ ++..+|+|++++.++++. +..      .++.  .+.+ |++.||+++    |    .+..++.++|.
T Consensus        28 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~~------~y~~--~~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~   97 (390)
T 1d2f_A           28 ADLLPFTISDM-DFATAPCIIEALNQRLMH-GVF------GYSR--WKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVI   97 (390)
T ss_dssp             --CEECCSSSC-SSCCCHHHHHHHHHHHTT-CCC------CCCC--SCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHH
T ss_pred             CCeeEeeecCC-CCCCCHHHHHHHHHHHhC-CCC------CCCC--CChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHH
Confidence            36899998876 677899999999998753 111      1111  1566 888888886    4    34566666667


Q ss_pred             HHHHHHHHHhcccCCCCeeE-----------------EEEEEecC--------CCHHHHHHHHHH
Q psy16850        123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA--------NTTDIIKEASKE  162 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H--------Nd~~~Le~~L~~  162 (174)
                      .++..++.++.+  +|.++.                 +.++.+++        .|+++||+.+++
T Consensus        98 ~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~  160 (390)
T 1d2f_A           98 YMVSELIRQWSE--TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK  160 (390)
T ss_dssp             HHHHHHHHHSSC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS
T ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc
Confidence            788888888865  444332                 24444543        689999999875

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=97.63  E-value=0.0003  Score=58.71  Aligned_cols=94  Identities=14%  Similarity=0.041  Sum_probs=69.2

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      .+|+|++.+     -.|++++++.++++....         +....+.+||+.||+|+|.+.++++++|..|+..++.++
T Consensus         9 ~~i~~~~p~-----~~~~~~~a~~~~~~~~~~---------~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~   74 (393)
T 1mdo_A            9 DFLPFSRPA-----MGAEELAAVKTVLDSGWI---------TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMAL   74 (393)
T ss_dssp             CCBCSCCCC-----CCHHHHHHHHHHHHHTCC---------SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHT
T ss_pred             cccccCCCC-----CCHHHHHHHHHHHhcCCc---------CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHc
Confidence            367787733     247888888888866321         234789999999999999999999999999999999998


Q ss_pred             -cccCCCCeeE-----------------EEEEEec------CCCHHHHHHHHHH
Q psy16850        133 -GKMIPYFTEL-----------------IYFYRFL------ANTTDIIKEASKE  162 (174)
Q Consensus       133 -~~~~~g~~~s-----------------~~~~~f~------HNd~~~Le~~L~~  162 (174)
                       .+  +|.++.                 +.++.++      +.|+++|++.+++
T Consensus        75 ~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  126 (393)
T 1mdo_A           75 GIG--EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP  126 (393)
T ss_dssp             TCC--TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT
T ss_pred             CCC--CCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC
Confidence             54  343332                 2344443      4689999988864

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=97.63  E-value=0.00061  Score=57.96  Aligned_cols=94  Identities=7%  Similarity=0.008  Sum_probs=68.0

Q ss_pred             EEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHH-HHHhC-CCcEEEecchhHHHHHHHHHh
Q psy16850         55 TVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDV-ARLHQ-KEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        55 inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~l-A~~~g-~e~al~f~sGy~aN~~~i~aL  132 (174)
                      |.|+..|   +...|++++++.++++. |.       ++++.+...+||+++ |+|+| .+.+++++||..|+..++.++
T Consensus         5 i~~~~p~---~~~~~~i~~a~~~~~~~-~~-------~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l   73 (377)
T 3ju7_A            5 IPFLRAS---TVPVIEYLDELKEIDAS-HI-------YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK   73 (377)
T ss_dssp             BCSCCCC---CCCGGGGHHHHHHHHHH-TC-------CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH
T ss_pred             eeccCCC---CCCcHHHHHHHHHHHHc-CC-------cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc
Confidence            4444444   35578899999998864 21       122246789999999 99999 899999999999999999887


Q ss_pred             -cccCCCCeeE-----------------EEEEEecC------CCHHHHHHHHH
Q psy16850        133 -GKMIPYFTEL-----------------IYFYRFLA------NTTDIIKEASK  161 (174)
Q Consensus       133 -~~~~~g~~~s-----------------~~~~~f~H------Nd~~~Le~~L~  161 (174)
                       .+  +|.++.                 +.++.++-      -|+++||+.++
T Consensus        74 ~~~--~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~  124 (377)
T 3ju7_A           74 KRK--KGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIE  124 (377)
T ss_dssp             SCT--TCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred             CCC--CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHh
Confidence             44  555443                 23444432      38999999884

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=97.60  E-value=0.00014  Score=61.23  Aligned_cols=106  Identities=14%  Similarity=-0.039  Sum_probs=69.8

Q ss_pred             CeeEEEeccC--cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecch-hHHHH
Q psy16850         51 EKEVTVYCSN--DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSC-YVAND  126 (174)
Q Consensus        51 g~~~inf~Sn--dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sG-y~aN~  126 (174)
                      ++.+|+|+++  |+.|+ .+|++++++.+++++.+..    ...++....+.+|++.||+|+|.+ +.+++++| -.++.
T Consensus        31 ~~~~i~l~~g~~~~~~~-~~~~v~~a~~~~~~~~~~~----~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~  105 (397)
T 2zyj_A           31 RPGILSFAGGLPAPELF-PKEEAAEAAARILREKGEV----ALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALD  105 (397)
T ss_dssp             STTCEEESSCCCCGGGC-CHHHHHHHHHHHHHHHHHH----HTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred             CCCceecCCCCCCchhC-CHHHHHHHHHHHHHhcchh----hhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHH
Confidence            4568999876  56554 4789999999988764311    111223335789999999999853 34555555 55677


Q ss_pred             HHHHHhcccCCCCeeE-----------------EEEEEecC----CCHHHHHHHHHHh
Q psy16850        127 STLFTLGKMIPYFTEL-----------------IYFYRFLA----NTTDIIKEASKEL  163 (174)
Q Consensus       127 ~~i~aL~~~~~g~~~s-----------------~~~~~f~H----Nd~~~Le~~L~~~  163 (174)
                      .++.++.+  +|.+..                 +.++.+++    .|+++|++.+++.
T Consensus       106 ~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~  161 (397)
T 2zyj_A          106 LVGKVFLD--EGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRE  161 (397)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHC
T ss_pred             HHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCCCCHHHHHHHHhhc
Confidence            78888865  444332                 24455554    4899999999863

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=97.60  E-value=0.00016  Score=61.34  Aligned_cols=104  Identities=6%  Similarity=-0.146  Sum_probs=69.6

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CCC-----cEEEecc
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QKE-----AGLVFTS  120 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~e-----~al~f~s  120 (174)
                      .|+++|+|++|++ .+..+|.+++++.+++++..      -..++....+.+|++.||+|+    |.+     ..++.++
T Consensus        45 ~g~~~idl~~g~~-~~~~~~~v~~a~~~~~~~~~------~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G  117 (404)
T 2o1b_A           45 GPLPLINMAVGIP-DGPTPQGIIDHFQKALTIPE------NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYG  117 (404)
T ss_dssp             CSSCCEECCCCSC-SSCCCHHHHHHHHHHTTCHH------HHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESS
T ss_pred             CCCCEEecCCcCC-CCCCCHHHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCC
Confidence            3567999999987 67778999999988764310      011222234678999999998    853     4555555


Q ss_pred             hhHHHHHHHHHhcccCCCCeeE-----------------EEEEEecC------CCHHHHHHHHHH
Q psy16850        121 CYVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA------NTTDIIKEASKE  162 (174)
Q Consensus       121 Gy~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H------Nd~~~Le~~L~~  162 (174)
                      |..++..++.++.+  +|.+..                 +.++.+++      .|+++|++.++.
T Consensus       118 ~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  180 (404)
T 2o1b_A          118 TKNGLVAVPTCVIN--PGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIID  180 (404)
T ss_dssp             HHHHHHHHHHHHCC--TTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH
T ss_pred             cHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhcc
Confidence            56789899999865  444332                 24455554      478889888863

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=97.60  E-value=0.0002  Score=59.13  Aligned_cols=103  Identities=13%  Similarity=0.013  Sum_probs=71.3

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHH-cCCCccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHHHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEK-FGTGAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDSTLF  130 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~-~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~i~  130 (174)
                      ++|++++   | ..+|++++++.++++. |+...+..+.-.+....+.+|++.||+++|.+  ..++.++|..|+..++.
T Consensus         4 yld~~~~---~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~   79 (384)
T 1eg5_A            4 YFDNNAT---T-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILK   79 (384)
T ss_dssp             ECBTTTC---C-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHH
T ss_pred             EEecCcc---C-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHH
Confidence            3455554   2 5589999999998875 44333222322334577899999999999976  67888889999999999


Q ss_pred             Hhc----ccCCCCeeE--------------------EEEEEecC-----CCHHHHHHHHHH
Q psy16850        131 TLG----KMIPYFTEL--------------------IYFYRFLA-----NTTDIIKEASKE  162 (174)
Q Consensus       131 aL~----~~~~g~~~s--------------------~~~~~f~H-----Nd~~~Le~~L~~  162 (174)
                      ++.    +  +|..+.                    +.++.+++     .|+++||+.++.
T Consensus        80 ~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  138 (384)
T 1eg5_A           80 TVAETFEK--RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE  138 (384)
T ss_dssp             HHHHHTTT--TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT
T ss_pred             hhhhhccC--CCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC
Confidence            986    3  332221                    35566665     478888888754

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=97.59  E-value=8e-05  Score=62.93  Aligned_cols=78  Identities=15%  Similarity=-0.028  Sum_probs=55.2

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---------CcEEEecch
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---------EAGLVFTSC  121 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---------e~al~f~sG  121 (174)
                      +..+|+|++++ .++..+|++++++.+++++..     .-..++...-+.+|++.||++++.         +..+++++|
T Consensus        27 ~~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~-----~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~  100 (422)
T 3fvs_A           27 EHDVVNLGQGF-PDFPPPDFAVEAFQHAVSGDF-----MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGG  100 (422)
T ss_dssp             TSCCEECCCSS-CSSCCCHHHHHHHHHHHHSCG-----GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHH
T ss_pred             cCCceEeCCCC-CCCCCCHHHHHHHHHHHhCCC-----ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECCh
Confidence            45689999997 788889999999999886521     001111112245666666666652         578999999


Q ss_pred             hHHHHHHHHHhcc
Q psy16850        122 YVANDSTLFTLGK  134 (174)
Q Consensus       122 y~aN~~~i~aL~~  134 (174)
                      ..++..++.++.+
T Consensus       101 ~~a~~~~~~~~~~  113 (422)
T 3fvs_A          101 YGALFTAFQALVD  113 (422)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999865

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=97.58  E-value=0.00027  Score=60.10  Aligned_cols=66  Identities=27%  Similarity=0.212  Sum_probs=54.4

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCH
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTT  153 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~  153 (174)
                      ..+...+||+.||+++|.+++++|+||..||..++.++.+  +|.++.                     +.+..++.+|+
T Consensus        63 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~  140 (398)
T 1gc0_A           63 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLR--PGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADL  140 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCH
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhc--CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCH
Confidence            5688999999999999999999999999999999999865  333221                     35677788899


Q ss_pred             HHHHHHHHH
Q psy16850        154 DIIKEASKE  162 (174)
Q Consensus       154 ~~Le~~L~~  162 (174)
                      ++|++.++.
T Consensus       141 ~~l~~~i~~  149 (398)
T 1gc0_A          141 QALEAAMTP  149 (398)
T ss_dssp             HHHHHHCCT
T ss_pred             HHHHHhcCC
Confidence            999988864

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=97.58  E-value=9e-05  Score=64.47  Aligned_cols=66  Identities=14%  Similarity=0.073  Sum_probs=54.9

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCH
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTT  153 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~  153 (174)
                      ..+.+++||+.||+++|.+.+++|+||..||..++.++++  +|.++.                     +.+..++++|+
T Consensus        80 ~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~  157 (415)
T 2fq6_A           80 GTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIE--QGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIG  157 (415)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC--TTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCG
T ss_pred             CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCH
Confidence            3478999999999999999999999999999999998875  444332                     35667789999


Q ss_pred             HHHHHHHHH
Q psy16850        154 DIIKEASKE  162 (174)
Q Consensus       154 ~~Le~~L~~  162 (174)
                      ++||+.|+.
T Consensus       158 ~~le~ai~~  166 (415)
T 2fq6_A          158 ADIVKHLQP  166 (415)
T ss_dssp             GGGGGGCCT
T ss_pred             HHHHHhhcc
Confidence            999988864

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=97.58  E-value=0.00019  Score=59.83  Aligned_cols=98  Identities=16%  Similarity=-0.043  Sum_probs=71.3

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHHHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDSTLF  130 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~i~  130 (174)
                      .+|+|++|+. .+..+|.+++++.+++++ ..       .++....+.+|++.||++++.+  ..++.++|..|+..++.
T Consensus        26 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~-------~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~   96 (381)
T 1v2d_A           26 GAVNLGQGFP-SNPPPPFLLEAVRRALGR-QD-------QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQ   96 (381)
T ss_dssp             TCEECCCCSC-SSCCCHHHHHHHHHHTTT-SC-------SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred             CeEEecCCCC-CCCCCHHHHHHHHHHHHH-hc-------CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHH
Confidence            3789988864 667889999999998765 11       1233335789999999999974  68888999999999999


Q ss_pred             HhcccCCCCeeE-----------------EEEEEecC--------CCHHHHHHHHH
Q psy16850        131 TLGKMIPYFTEL-----------------IYFYRFLA--------NTTDIIKEASK  161 (174)
Q Consensus       131 aL~~~~~g~~~s-----------------~~~~~f~H--------Nd~~~Le~~L~  161 (174)
                      ++..  +|.+..                 +.++.+++        .|+++|++.+.
T Consensus        97 ~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~  150 (381)
T 1v2d_A           97 SLVG--PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT  150 (381)
T ss_dssp             HHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC
T ss_pred             HhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC
Confidence            9865  444332                 24455554        37888887774

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=97.58  E-value=0.00036  Score=56.87  Aligned_cols=72  Identities=11%  Similarity=0.086  Sum_probs=52.8

Q ss_pred             CCeeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchhHHHHH
Q psy16850         50 SEKEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCYVANDS  127 (174)
Q Consensus        50 ~g~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~aN~~  127 (174)
                      +.+.+|+|++| +++|.  +|++++++.+.++.+.      +  +. ...+.+|++.||+++|.+. .+++++|....+.
T Consensus        14 ~~~~~i~l~~n~~~~~~--~~~v~~a~~~~~~~~~------~--y~-~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~   82 (337)
T 3p1t_A           14 AAAQAVCLAFNENPEAV--EPRVQAAIAAAAARIN------R--YP-FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFD   82 (337)
T ss_dssp             CCCCCEECSSCCCCSCC--CHHHHHHHHHHGGGTT------S--CC-TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred             CCCCceEeeCCCCCCCC--CHHHHHHHHHhhhhhc------c--CC-CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHH
Confidence            34678999999 78774  5999999888765421      1  11 3568999999999999864 7888888876665


Q ss_pred             HHHHh
Q psy16850        128 TLFTL  132 (174)
Q Consensus       128 ~i~aL  132 (174)
                      ++...
T Consensus        83 ~~~~~   87 (337)
T 3p1t_A           83 RISAE   87 (337)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55443

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=97.56  E-value=0.00028  Score=61.74  Aligned_cols=99  Identities=19%  Similarity=0.105  Sum_probs=68.5

Q ss_pred             ccCcccCCCCCccchHHHHHHHHHcCCCccccccccCC---chHHHHHHHHHHHHhCCCcEEE---ecchhHHHHHHHHH
Q psy16850         58 CSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGN---SLFHEKLEEDVARLHQKEAGLV---FTSCYVANDSTLFT  131 (174)
Q Consensus        58 ~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~---~~~~~~LE~~lA~~~g~e~al~---f~sGy~aN~~~i~a  131 (174)
                      ..+|++...+++++++++.+.    ..+........|+   ....++||+.+|+++|.+.+++   |+||+.||..++.+
T Consensus        27 ~~~~~~~~~n~~~vl~A~~~~----~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~a  102 (431)
T 3ht4_A           27 KRADEVIESNQFRVLESFGKH----KISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFG  102 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT----TCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHh----chhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHH
Confidence            345555555677777776653    2222111112222   2568999999999999999988   99999999999998


Q ss_pred             hcccCCCCee----------------------------EEEEEEecCC-----CHHHHHHHHHH
Q psy16850        132 LGKMIPYFTE----------------------------LIYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       132 L~~~~~g~~~----------------------------s~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                      +..  +|+++                            .+.++.++++     |+++|++.++.
T Consensus       103 l~~--~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~  164 (431)
T 3ht4_A          103 ILR--PGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS  164 (431)
T ss_dssp             TCC--TTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT
T ss_pred             hCC--CCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC
Confidence            875  22211                            1467788884     99999998864

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=97.54  E-value=0.00027  Score=61.80  Aligned_cols=66  Identities=18%  Similarity=0.093  Sum_probs=55.8

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+..++||+.||+++|.+.+++|+||..|+..++.++++  +|.++.                     +.++.++.+|++
T Consensus        81 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~--~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~  158 (430)
T 3ri6_A           81 NPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLAR--AGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSL  158 (430)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHH
T ss_pred             CHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence            478999999999999999999999999999999999876  454332                     367788899999


Q ss_pred             HHHHHHHHh
Q psy16850        155 IIKEASKEL  163 (174)
Q Consensus       155 ~Le~~L~~~  163 (174)
                      +|++.++..
T Consensus       159 ~l~~ai~~~  167 (430)
T 3ri6_A          159 AVEHACDET  167 (430)
T ss_dssp             HHHHHCCTT
T ss_pred             HHHHhhCCC
Confidence            999988653

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=97.53  E-value=0.0003  Score=57.95  Aligned_cols=94  Identities=10%  Similarity=-0.035  Sum_probs=60.6

Q ss_pred             CCccchHHHHHHHHHcCC-Ccc-ccccccCCchHHHHHHHH-HHHHhCCCcEEEecch-hHHHHHHHHHhcccCCCCeeE
Q psy16850         67 CHPKVKSAVREALEKFGT-GAG-GTRNISGNSLFHEKLEED-VARLHQKEAGLVFTSC-YVANDSTLFTLGKMIPYFTEL  142 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~-gs~-~Sr~~~G~~~~~~~LE~~-lA~~~g~e~al~f~sG-y~aN~~~i~aL~~~~~g~~~s  142 (174)
                      .+|++++++.+.++..+. +.+ +++...+....+.+|++. ||+++|.+ .++|++| -.|+..++.++.+  +|....
T Consensus        21 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~--~gd~vl   97 (371)
T 2e7j_A           21 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAK--KDAWVV   97 (371)
T ss_dssp             CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCC--TTCEEE
T ss_pred             CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhC--CCCEEE
Confidence            367788887777655321 111 234445567889999999 99999998 7777777 6899999999865  454332


Q ss_pred             -----------------EEEEEec--CC-----CHHHHHHHHHHh
Q psy16850        143 -----------------IYFYRFL--AN-----TTDIIKEASKEL  163 (174)
Q Consensus       143 -----------------~~~~~f~--HN-----d~~~Le~~L~~~  163 (174)
                                       +.++.++  ++     |+++||+.+++.
T Consensus        98 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  142 (371)
T 2e7j_A           98 MDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEET  142 (371)
T ss_dssp             EETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHH
T ss_pred             EccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhh
Confidence                             3667777  77     899999999864

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=97.53  E-value=0.00089  Score=56.54  Aligned_cols=86  Identities=21%  Similarity=0.087  Sum_probs=64.4

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE----
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL----  142 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s----  142 (174)
                      .|++++++.++++. +....     .|  +.+.+||+.||+|+|.+.++++++|..|+..++.++ .+  +|.++.    
T Consensus        11 ~~~v~~a~~~~~~~-~~~~~-----~g--~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~--~gd~Vl~~~~   80 (394)
T 1o69_A           11 GGNELKYIEEVFKS-NYIAP-----LG--EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVK--QDDIVLASSF   80 (394)
T ss_dssp             -CCHHHHHHHHHHH-TTTSC-----TT--HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESS
T ss_pred             CHHHHHHHHHHHHc-CCccC-----CC--hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CCCEEEECCC
Confidence            48899999998865 21110     12  679999999999999999999999999999999998 54  343322    


Q ss_pred             -------------EEEEEec-----CCCHHHHHHHHHHh
Q psy16850        143 -------------IYFYRFL-----ANTTDIIKEASKEL  163 (174)
Q Consensus       143 -------------~~~~~f~-----HNd~~~Le~~L~~~  163 (174)
                                   +.++.++     +.|+++|++.+++.
T Consensus        81 ~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~  119 (394)
T 1o69_A           81 TFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKEC  119 (394)
T ss_dssp             SCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcc
Confidence                         2455555     35899999999863

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=97.52  E-value=0.00062  Score=58.97  Aligned_cols=66  Identities=12%  Similarity=-0.086  Sum_probs=55.5

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCH
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTT  153 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~  153 (174)
                      ..+..++||+.||+++|.+.+++++||..|+..++.++.+  +|.++.                     +.++.++.+|+
T Consensus        79 ~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~  156 (414)
T 3ndn_A           79 GNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLG--AGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDL  156 (414)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCH
T ss_pred             CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCH
Confidence            4578999999999999999999999999999999998865  454332                     36677888999


Q ss_pred             HHHHHHHHH
Q psy16850        154 DIIKEASKE  162 (174)
Q Consensus       154 ~~Le~~L~~  162 (174)
                      ++||+.++.
T Consensus       157 ~~l~~ai~~  165 (414)
T 3ndn_A          157 SQWERALSV  165 (414)
T ss_dssp             HHHHHHTSS
T ss_pred             HHHHHhcCC
Confidence            999998864

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=97.50  E-value=0.00042  Score=64.95  Aligned_cols=68  Identities=21%  Similarity=0.120  Sum_probs=53.8

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecch-hHHHHHHHHHhcccCCCCeeE-----------------EEEEEec-------
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSC-YVANDSTLFTLGKMIPYFTEL-----------------IYFYRFL-------  149 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sG-y~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~-------  149 (174)
                      ...++.++|+.+|+++|.+.++++++| +.||.+++.++++  +|+.+.                 +..+.++       
T Consensus       193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~--pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~g  270 (715)
T 3n75_A          193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAP--AGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYG  270 (715)
T ss_dssp             TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTC
T ss_pred             CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCC--CCCEEEECCCccHHHHHHHHHcCCEEEEEeccccccc
Confidence            345689999999999999999999999 6999999999987  454332                 2333333       


Q ss_pred             --CC------CHHHHHHHHHHhc
Q psy16850        150 --AN------TTDIIKEASKELQ  164 (174)
Q Consensus       150 --HN------d~~~Le~~L~~~~  164 (174)
                        |+      |+++||+.|++..
T Consensus       271 i~~~i~~~~~d~e~Le~~l~~~~  293 (715)
T 3n75_A          271 ILGGIPQSEFQHATIAKRVKETP  293 (715)
T ss_dssp             CBCCCCGGGGSHHHHHHHHHHST
T ss_pred             cccCcccccCCHHHHHHHHhhCc
Confidence              33      8999999999764

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=97.49  E-value=0.00038  Score=57.07  Aligned_cols=94  Identities=10%  Similarity=-0.008  Sum_probs=64.6

Q ss_pred             CCccchHHHHHHHHHcCC-CccccccccCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHHHHhc----ccCCCC
Q psy16850         67 CHPKVKSAVREALEKFGT-GAGGTRNISGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTLFTLG----KMIPYF  139 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~-gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i~aL~----~~~~g~  139 (174)
                      .+|++++++.+.+.+... ..+..+.-.+....++++++.+|+++|.+.  +++.++|..|+..++.++.    +  +|.
T Consensus        12 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~--~gd   89 (382)
T 4hvk_A           12 VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNAR--KGK   89 (382)
T ss_dssp             CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGG--GCC
T ss_pred             CCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcC--CCC
Confidence            378899999988876332 112222223456788999999999999763  6677777789989998886    4  333


Q ss_pred             eeE--------------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        140 TEL--------------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       140 ~~s--------------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                      .+.                    +.++.++.+     |+++||+.+++
T Consensus        90 ~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  137 (382)
T 4hvk_A           90 HILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD  137 (382)
T ss_dssp             EEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             EEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc
Confidence            221                    245556655     89999988864

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=97.49  E-value=0.00052  Score=57.97  Aligned_cols=104  Identities=10%  Similarity=-0.147  Sum_probs=67.6

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CCC-------cE--EEecch
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QKE-------AG--LVFTSC  121 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e-------~a--l~f~sG  121 (174)
                      ..+|||++++|+++..+|.+.+++.++.   ..+    ..-++...-..+|++.||+|+ |.+       ..  +..++|
T Consensus        41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~---~~~----~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g  113 (409)
T 4eu1_A           41 KRKVNLSIGVYRDDADQPFVLECVKQAT---LGT----NMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG  113 (409)
T ss_dssp             SSCEECCCSSCCCTTSCCCCCHHHHTCC---CCS----CCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred             cCceeeeeeEEECCCCCEeecHHHHhcC---ccc----cccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence            4689999999999999999999988861   111    111222233578999999987 543       12  346677


Q ss_pred             hHHHHHHH---HHhcccCCCCeeE-----------------EEEEEecC-------CCHHHHHHHHHHhc
Q psy16850        122 YVANDSTL---FTLGKMIPYFTEL-----------------IYFYRFLA-------NTTDIIKEASKELQ  164 (174)
Q Consensus       122 y~aN~~~i---~aL~~~~~g~~~s-----------------~~~~~f~H-------Nd~~~Le~~L~~~~  164 (174)
                      -.++..+.   .++.+  +|....                 +.++.++.       .|+++|++.+++..
T Consensus       114 ~ga~~~~~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~  181 (409)
T 4eu1_A          114 TGALRIGGDLLNRFVA--NCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP  181 (409)
T ss_dssp             HHHHHHHHHHGGGTSS--SCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHhcC--CCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCC
Confidence            77766543   33333  444332                 25566654       48999999998643

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=97.47  E-value=0.0013  Score=57.76  Aligned_cols=67  Identities=18%  Similarity=0.083  Sum_probs=56.2

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+.+||+.||+++|.+++++|+||..|+..++.++++  +|.++.                     +.+..++++|++
T Consensus       113 ~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~  190 (445)
T 1qgn_A          113 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVG  190 (445)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHH
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence            578999999999999999999999999999999998875  343321                     467788899999


Q ss_pred             HHHHHHHHhc
Q psy16850        155 IIKEASKELQ  164 (174)
Q Consensus       155 ~Le~~L~~~~  164 (174)
                      +|++.|+...
T Consensus       191 ~l~~ai~~~t  200 (445)
T 1qgn_A          191 ALELALNQKK  200 (445)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHhccCC
Confidence            9999998643

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=96.59  E-value=1.7e-05  Score=66.80  Aligned_cols=98  Identities=14%  Similarity=0.069  Sum_probs=68.0

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CCcEEEecchhHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLVFTSCYVA  124 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~f~sGy~a  124 (174)
                      .+|+|+++++ +|..+|++++++.+++++..         .++...+.+|++.||+++.        .+..+++++|..|
T Consensus        32 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~---------~~y~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a  101 (392)
T 3b1d_A           32 QLLPAWIADM-DFEVMPEVKQAIHDYAEQLV---------YGYTYASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPA  101 (392)
Confidence            8999999997 88899999999999875411         1222227788888888763        3556777777889


Q ss_pred             HHHHHHHhcccCCCCee----------------E-EEEEEecC--------CCHHHHHHHHHH
Q psy16850        125 NDSTLFTLGKMIPYFTE----------------L-IYFYRFLA--------NTTDIIKEASKE  162 (174)
Q Consensus       125 N~~~i~aL~~~~~g~~~----------------s-~~~~~f~H--------Nd~~~Le~~L~~  162 (174)
                      +..++.++..  +|.++                . +.++.+++        .|+++|++.+++
T Consensus       102 ~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~  162 (392)
T 3b1d_A          102 ISIAIQAFTK--EGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE  162 (392)
Confidence            9989888864  22111                1 34455555        378888888863

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=97.45  E-value=0.00033  Score=57.82  Aligned_cols=103  Identities=11%  Similarity=0.013  Sum_probs=68.9

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCCCccc-cccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHHHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGG-TRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDSTLF  130 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~-Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~i~  130 (174)
                      ++|++++-    ..+|+|++++.+.++......++ ...-.+....+.++++.||+++|.+  .+++.++|..|+..++.
T Consensus         3 yld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~   78 (382)
T 4eb5_A            3 YFDYTSAK----PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII   78 (382)
T ss_dssp             BCBTTTCC----CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHH
T ss_pred             eeccCCCC----CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHH
Confidence            34555552    45889999999988763211111 1111134568999999999999986  56777788999999999


Q ss_pred             Hhc----ccCCCCeeE--------------------EEEEEecC-----CCHHHHHHHHHH
Q psy16850        131 TLG----KMIPYFTEL--------------------IYFYRFLA-----NTTDIIKEASKE  162 (174)
Q Consensus       131 aL~----~~~~g~~~s--------------------~~~~~f~H-----Nd~~~Le~~L~~  162 (174)
                      ++.    +  +|..+.                    +.++.++.     .|+++||+.++.
T Consensus        79 ~l~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  137 (382)
T 4eb5_A           79 GYAMRNAR--KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD  137 (382)
T ss_dssp             HHHHHHGG--GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             HHHhhccC--CCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC
Confidence            986    4  333221                    24556665     488999888754

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=97.44  E-value=0.00063  Score=56.73  Aligned_cols=101  Identities=19%  Similarity=0.056  Sum_probs=70.4

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCc-EEEecchh
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEA-GLVFTSCY  122 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~-al~f~sGy  122 (174)
                      ..+|+|++|+ ..+..+|++++++.+++++...+       ++...-+.+|++.||+|+    |    .+. .+++++|.
T Consensus        26 ~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~   97 (389)
T 1gd9_A           26 KDVISLGIGE-PDFDTPQHIKEYAKEALDKGLTH-------YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGAN   97 (389)
T ss_dssp             SSCEECCCCS-CSSCCCHHHHHHHHHHHHTTCCS-------CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTT
T ss_pred             cCeEecCCCC-CCCCCCHHHHHHHHHHHhCCCCC-------CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChH
Confidence            3578998886 45667899999999988652111       222233678888888888    7    356 88999999


Q ss_pred             HHHHHHHHHhcccCCCCeeE-----------------EEEEEec---CC----CHHHHHHHHHH
Q psy16850        123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFL---AN----TTDIIKEASKE  162 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~---HN----d~~~Le~~L~~  162 (174)
                      .|+..++.++.+  +|.+..                 +.++.++   |+    |+++||+.+++
T Consensus        98 ~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  159 (389)
T 1gd9_A           98 QAFLMGLSAFLK--DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD  159 (389)
T ss_dssp             HHHHHHHTTTCC--TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT
T ss_pred             HHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc
Confidence            999999999865  444332                 2344444   22    78889888764

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=97.43  E-value=0.00023  Score=62.42  Aligned_cols=77  Identities=10%  Similarity=0.039  Sum_probs=62.6

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHH----HHHHhCC---CcEEEecchhHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEED----VARLHQK---EAGLVFTSCYVAN  125 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~----lA~~~g~---e~al~f~sGy~aN  125 (174)
                      ..++|.|++|||....+.+..++.+++..++.+.  ++...+..+...++|+.    ||+++|.   +.++++++|..||
T Consensus        94 ~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~--~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~  171 (497)
T 2qma_A           94 NAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQ--SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSN  171 (497)
T ss_dssp             TSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCC--CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHH
T ss_pred             CCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcc--cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHH
Confidence            4679999999999999999999888776665543  34445666788888888    9999987   4678889999999


Q ss_pred             HHHHHH
Q psy16850        126 DSTLFT  131 (174)
Q Consensus       126 ~~~i~a  131 (174)
                      ..++.+
T Consensus       172 ~~al~~  177 (497)
T 2qma_A          172 QMGLML  177 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998887

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=97.42  E-value=0.00097  Score=56.54  Aligned_cols=78  Identities=15%  Similarity=-0.009  Sum_probs=55.1

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CC-cEEEecchh
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KE-AGLVFTSCY  122 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e-~al~f~sGy  122 (174)
                      ..+|+|+++++ .+..+|++++++.+++++.+.+.    ..++...-+.+|+++||+++    |    .+ ..++.++|.
T Consensus        37 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~----~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~  111 (429)
T 1yiz_A           37 YKPLNLGQGFP-DYHAPKYALNALAAAANSPDPLA----NQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAY  111 (429)
T ss_dssp             HCCEECCSSSC-SSCCCHHHHHHHHHHHTCSCGGG----GSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHH
T ss_pred             CCEEEecCCCC-CCCCCHHHHHHHHHHHhccccCc----cCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChH
Confidence            35899999876 66688999999999887643211    11222223567777788775    6    24 677778889


Q ss_pred             HHHHHHHHHhcc
Q psy16850        123 VANDSTLFTLGK  134 (174)
Q Consensus       123 ~aN~~~i~aL~~  134 (174)
                      .|+..++.++.+
T Consensus       112 ~a~~~~~~~~~~  123 (429)
T 1yiz_A          112 EALYATIQGHVD  123 (429)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999865

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=97.42  E-value=0.001  Score=56.13  Aligned_cols=109  Identities=11%  Similarity=-0.067  Sum_probs=65.9

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHH-cCCCccccccccCCchHHHHHHHHHHHHh-C-------CCcEEE--ec
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEK-FGTGAGGTRNISGNSLFHEKLEEDVARLH-Q-------KEAGLV--FT  119 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~-~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g-------~e~al~--f~  119 (174)
                      +..+|||++++||+.+.++...+.+.+++.+ .-..  +.-..++...-+.+|.+.||+++ +       .+..++  ++
T Consensus        28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~  105 (412)
T 1yaa_A           28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS--SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSL  105 (412)
T ss_dssp             CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT--TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred             CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc--ccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEecc
Confidence            4568999999999987554333444444333 2111  01111223344788999999998 3       356666  77


Q ss_pred             chhHHHHHHH--HHhcccCCCCeeE-----------------EEEEEecC-------CCHHHHHHHHHHh
Q psy16850        120 SCYVANDSTL--FTLGKMIPYFTEL-----------------IYFYRFLA-------NTTDIIKEASKEL  163 (174)
Q Consensus       120 sGy~aN~~~i--~aL~~~~~g~~~s-----------------~~~~~f~H-------Nd~~~Le~~L~~~  163 (174)
                      +|..|+..++  .++..  +|.++.                 +.++.+++       .|+++|++.+++.
T Consensus       106 g~~~a~~~~~~~~~~~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  173 (412)
T 1yaa_A          106 SGTGALHISAKFFSKFF--PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA  173 (412)
T ss_dssp             HHHHHHHHHHHHHHHHC--TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred             chHhHHHHHHHHHHHhC--CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC
Confidence            7888887763  33322  443322                 24556666       4899999999865

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.41  E-value=0.00029  Score=60.11  Aligned_cols=105  Identities=13%  Similarity=0.023  Sum_probs=69.3

Q ss_pred             CeeEEEeccC--cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CCC----cEEEecc
Q psy16850         51 EKEVTVYCSN--DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QKE----AGLVFTS  120 (174)
Q Consensus        51 g~~~inf~Sn--dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~e----~al~f~s  120 (174)
                      ++.+|+|+++  |+.|+ .+|++++++.++++..+..    ...++...-+.+|+++||+|+    |.+    +.+++++
T Consensus        42 ~~~~idl~~g~~~~~~~-~~~~v~~a~~~~~~~~~~~----~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~  116 (425)
T 1vp4_A           42 DKDAISFGGGVPDPETF-PRKELAEIAKEIIEKEYHY----TLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV  116 (425)
T ss_dssp             STTCEECCCCSCCGGGS-CHHHHHHHHHHHHHHSHHH----HTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEE
T ss_pred             CCCceeCCCCCCCcccC-CHHHHHHHHHHHHhhcchh----hcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEec
Confidence            4568999887  56644 4789999999988764310    111222234688999999999    832    3455555


Q ss_pred             h-hHHHHHHHHHhcccCCCCeeE-----------------EEEEEecC----CCHHHHHHHHHH
Q psy16850        121 C-YVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA----NTTDIIKEASKE  162 (174)
Q Consensus       121 G-y~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H----Nd~~~Le~~L~~  162 (174)
                      | ..++..++.++.+  +|.+..                 +.++.+++    .|+++|++.|++
T Consensus       117 G~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~  178 (425)
T 1vp4_A          117 GSQQALDLIGKLFLD--DESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSE  178 (425)
T ss_dssp             HHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHHh
Confidence            5 6677788888865  444332                 24555555    489999999987

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=97.39  E-value=0.0011  Score=57.01  Aligned_cols=65  Identities=20%  Similarity=0.051  Sum_probs=54.0

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEe-cCCCH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRF-LANTT  153 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f-~HNd~  153 (174)
                      .+...+||+.||+++|.+.+++|+||..||..++.++..  +|.+..                     +.+..+ +.+|+
T Consensus        57 ~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~  134 (421)
T 2ctz_A           57 NPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQ--AGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERP  134 (421)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCH
T ss_pred             ChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCH
Confidence            368999999999999999999999999999999998865  343221                     366778 88999


Q ss_pred             HHHHHHHHH
Q psy16850        154 DIIKEASKE  162 (174)
Q Consensus       154 ~~Le~~L~~  162 (174)
                      ++||+.++.
T Consensus       135 ~~l~~~i~~  143 (421)
T 2ctz_A          135 EEFLALTDE  143 (421)
T ss_dssp             HHHHHHCCT
T ss_pred             HHHHHhhcc
Confidence            999998865

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=97.38  E-value=0.00049  Score=60.86  Aligned_cols=102  Identities=13%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             ccCCCCCccch----------HHHHHHHHHcCC-CccccccccCCchHHHHHHHHHHHHhC-----CCcEEEecchhHHH
Q psy16850         62 YLGMSCHPKVK----------SAVREALEKFGT-GAGGTRNISGNSLFHEKLEEDVARLHQ-----KEAGLVFTSCYVAN  125 (174)
Q Consensus        62 YLGL~~~p~v~----------~a~~~al~~~G~-gs~~Sr~~~G~~~~~~~LE~~lA~~~g-----~e~al~f~sGy~aN  125 (174)
                      -|+|+.+|.++          +++.++++.++. +..+.....|...+.+++.+.++++.|     .++.++++++..++
T Consensus        87 ~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai  166 (498)
T 3ihj_A           87 VMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGI  166 (498)
T ss_dssp             HHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHH
T ss_pred             HHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHH
Confidence            35556666666          888888988763 344455566777788888888877775     46778888888888


Q ss_pred             HHHHHHhcccCC--CCeeE-----------------EEEEEecCC-------CHHHHHHHHHHh
Q psy16850        126 DSTLFTLGKMIP--YFTEL-----------------IYFYRFLAN-------TTDIIKEASKEL  163 (174)
Q Consensus       126 ~~~i~aL~~~~~--g~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~~  163 (174)
                      ..++.+|....+  +..+.                 +.++.|+++       |+++||+.|++.
T Consensus       167 ~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~  230 (498)
T 3ihj_A          167 STILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEA  230 (498)
T ss_dssp             HHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhh
Confidence            899999876211  12332                 367788887       999999999885

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=97.35  E-value=0.00026  Score=57.90  Aligned_cols=100  Identities=12%  Similarity=0.180  Sum_probs=71.3

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-EEEecchhHHHHHHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-GLVFTSCYVANDSTLF  130 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-al~f~sGy~aN~~~i~  130 (174)
                      ..+|+|++|++.+  .+|++++++.+.+.  +     .....|......+|++.||+++|.+. .++.++|..||..++.
T Consensus         7 ~~~id~~~~~~~~--~~~~v~~a~~~~~~--~-----~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~   77 (356)
T 1v72_A            7 PPALGFSSDNIAG--ASPEVAQALVKHSS--G-----QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLS   77 (356)
T ss_dssp             CCCCBCSCGGGCC--CCHHHHHHHHHTTS--S-----CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHH
T ss_pred             CceEeeccCCccC--CCHHHHHHHHhhcc--C-----cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHH
Confidence            3578999987643  57999998887642  1     12334567889999999999999766 4777999999999999


Q ss_pred             HhcccCCCCee---------------------EEEEEEecCC----CHHHHHH-HHHH
Q psy16850        131 TLGKMIPYFTE---------------------LIYFYRFLAN----TTDIIKE-ASKE  162 (174)
Q Consensus       131 aL~~~~~g~~~---------------------s~~~~~f~HN----d~~~Le~-~L~~  162 (174)
                      ++.+  +|..+                     .+.++.++.+    |+++||+ .+++
T Consensus        78 ~~~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~  133 (356)
T 1v72_A           78 AMTP--PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREK  133 (356)
T ss_dssp             TSCC--TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSS
T ss_pred             HhcC--CCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhc
Confidence            8764  22111                     2244555554    7888988 7764

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=97.34  E-value=0.00044  Score=57.25  Aligned_cols=81  Identities=15%  Similarity=-0.008  Sum_probs=61.3

Q ss_pred             chHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE-------
Q psy16850         71 VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL-------  142 (174)
Q Consensus        71 v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s-------  142 (174)
                      +++++.+++....         .+..+.+.+||+.||+++|.+.++++++|..|+..++.++ .+  +|.+..       
T Consensus        21 ~~~~~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~--~gd~v~~~~~~~~   89 (374)
T 3uwc_A           21 YLNDLREFIKTAD---------FTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIG--AGDEVITCANTFI   89 (374)
T ss_dssp             HHHHHHHHHHHTC---------CSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCH
T ss_pred             HHHHHHHHHHcCC---------cccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CCCEEEECCCccH
Confidence            5566665554321         3456789999999999999999999999999999999998 54  444332       


Q ss_pred             ----------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        143 ----------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       143 ----------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                                +.++.++++     |+++|++.+++
T Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~  124 (374)
T 3uwc_A           90 ASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITD  124 (374)
T ss_dssp             HHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCT
T ss_pred             HHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCC
Confidence                      367777877     88888887754

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=97.32  E-value=0.0006  Score=56.84  Aligned_cols=65  Identities=11%  Similarity=-0.046  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE-----------------EEEEEecCC-----
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL-----------------IYFYRFLAN-----  151 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s-----------------~~~~~f~HN-----  151 (174)
                      ..+...+||+.||+++|.+.+++++||..|+..++.++ .+  +|.+..                 +.++.++.+     
T Consensus        33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~--~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~  110 (367)
T 3nyt_A           33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVG--PGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYN  110 (367)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCS
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCC--CcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCC
Confidence            44679999999999999999999999999999999998 44  444332                 244444433     


Q ss_pred             -CHHHHHHHHH
Q psy16850        152 -TTDIIKEASK  161 (174)
Q Consensus       152 -d~~~Le~~L~  161 (174)
                       |+++||+.+.
T Consensus       111 ~d~~~l~~~i~  121 (367)
T 3nyt_A          111 LDPQLLEAAIT  121 (367)
T ss_dssp             BCGGGTGGGCC
T ss_pred             cCHHHHHHhcC
Confidence             7888887764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=97.31  E-value=0.0013  Score=55.21  Aligned_cols=102  Identities=16%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCcEEEecchh
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEAGLVFTSCY  122 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~al~f~sGy  122 (174)
                      ++.+|+|++|++ .+...|.+++++.++++. +..  +-....|    +.+|.+.||+++    |    .+..+++++|.
T Consensus        30 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~~--~y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~  101 (385)
T 1b5p_A           30 GVDLVALTAGEP-DFDTPEHVKEAARRALAQ-GKT--KYAPPAG----IPELREALAEKFRRENGLSVTPEETIVTVGGS  101 (385)
T ss_dssp             TCCCEECCCSSC-SSCCCHHHHHHHHHHHHT-TCC--SCCCTTC----CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHH
T ss_pred             CCCEEEecCCCC-CCCCCHHHHHHHHHHHhc-CCC--CCCCCCC----CHHHHHHHHHHHHHHhCCCCChHHEEEcCChH
Confidence            456799999987 566678899998888764 211  1111123    456666666666    4    25678888889


Q ss_pred             HHHHHHHHHhcccCCCCeeE-----------------EEEEEecC-------CCHHHHHHHHHH
Q psy16850        123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA-------NTTDIIKEASKE  162 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H-------Nd~~~Le~~L~~  162 (174)
                      .++..++.++.+  +|.+..                 +.++.++.       .|+++||+.+..
T Consensus       102 ~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  163 (385)
T 1b5p_A          102 QALFNLFQAILD--PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP  163 (385)
T ss_dssp             HHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT
T ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC
Confidence            999999999865  454432                 24455554       367788777654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=97.30  E-value=0.0014  Score=55.13  Aligned_cols=106  Identities=8%  Similarity=-0.124  Sum_probs=70.3

Q ss_pred             CeeEEEeccCcccCCCCC----ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh-CC-------CcEEE-
Q psy16850         51 EKEVTVYCSNDYLGMSCH----PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH-QK-------EAGLV-  117 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~----p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~-------e~al~-  117 (174)
                      ++.+|||++++|+....+    |.+++++.+.++..+.     -.-++...-..+|++.||+++ +.       +..++ 
T Consensus        29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-----~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~  103 (412)
T 1ajs_A           29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-----NHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGV  103 (412)
T ss_dssp             CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-----CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred             CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-----ccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEE
Confidence            456899999999886543    5666666665522110     111223344689999999999 53       67788 


Q ss_pred             -ecchhHHHHHHHH--HhcccCCC-----CeeE-----------------EE-EEEecC---C----CHHHHHHHHHHh
Q psy16850        118 -FTSCYVANDSTLF--TLGKMIPY-----FTEL-----------------IY-FYRFLA---N----TTDIIKEASKEL  163 (174)
Q Consensus       118 -f~sGy~aN~~~i~--aL~~~~~g-----~~~s-----------------~~-~~~f~H---N----d~~~Le~~L~~~  163 (174)
                       +++|..|+..++.  ++..  +|     .+..                 +. ++.+++   +    |+++|++.+++.
T Consensus       104 ~t~gg~~a~~~~~~~~~~~~--~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  180 (412)
T 1ajs_A          104 QSLGGTGALRIGAEFLARWY--NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA  180 (412)
T ss_dssp             EEEHHHHHHHHHHHHHHHHS--SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred             ECCCcHHHHHHHHHHHHHhC--cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhC
Confidence             8999999988854  3333  45     4332                 25 677776   3    799999999864

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=97.30  E-value=0.00057  Score=56.62  Aligned_cols=75  Identities=4%  Similarity=-0.172  Sum_probs=50.0

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC----CcEEEecch
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK----EAGLVFTSC  121 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~----e~al~f~sG  121 (174)
                      +| ++|+|++|+ ..+..+|++++++.+.+..    ..+-....|    +.+|+++||+|+    |.    +..++.++|
T Consensus        22 ~g-~~i~l~~~~-~~~~~~~~v~~a~~~~~~~----~~~y~~~~g----~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~   91 (376)
T 3ezs_A           22 KK-RGLDLGIGE-PQFETPKFIQDALKNHTHS----LNIYPKSAF----EESLRAAQRGFFKRRFKIELKENELISTLGS   91 (376)
T ss_dssp             SS-CCCBCSSCC-CCSCCCHHHHHHHHTTGGG----GGSCCCTTC----CHHHHHHHHHHHHHHHSCCCCGGGEEEESSS
T ss_pred             cC-CEEEeCCCC-CCCCCCHHHHHHHHHhhhh----cCCCCCCCC----CHHHHHHHHHHHHHHhCCCCCHHHEEECcCc
Confidence            45 789999987 6777788888888776521    111111123    345555566555    63    667888888


Q ss_pred             hHHHHHHHHHhcc
Q psy16850        122 YVANDSTLFTLGK  134 (174)
Q Consensus       122 y~aN~~~i~aL~~  134 (174)
                      ..++..++.++.+
T Consensus        92 ~~al~~~~~~~~~  104 (376)
T 3ezs_A           92 REVLFNFPSFVLF  104 (376)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            8888889999865

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=97.28  E-value=0.0027  Score=52.89  Aligned_cols=99  Identities=8%  Similarity=-0.079  Sum_probs=68.6

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC----C-cEEEecchhH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK----E-AGLVFTSCYV  123 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~----e-~al~f~sGy~  123 (174)
                      .+|+|+++++ .+..+|++++++.++++. +..      .++...-+.+|++.||+|+    |.    + ..++.++|..
T Consensus        31 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~~------~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~  102 (386)
T 1u08_A           31 QAINLSQGFP-DFDGPRYLQERLAHHVAQ-GAN------QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATE  102 (386)
T ss_dssp             TCEECCCSSC-SSCCCHHHHHHHHHHHHT-TCC------SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHH
T ss_pred             CeEEecCCCC-CCCCCHHHHHHHHHHHHh-hcc------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHH
Confidence            4789999876 666789999999998865 211      1112223677888888885    53    3 6788888889


Q ss_pred             HHHHHHHHhcccCCCCeeE-----------------EEEEEecC------CCHHHHHHHHH
Q psy16850        124 ANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA------NTTDIIKEASK  161 (174)
Q Consensus       124 aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H------Nd~~~Le~~L~  161 (174)
                      ++..++.++.+  +|.+..                 +.++.+++      .|+++|++.+.
T Consensus       103 a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~  161 (386)
T 1u08_A          103 ALYAAITALVR--NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS  161 (386)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC
T ss_pred             HHHHHHHHhCC--CCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhc
Confidence            99999999865  444332                 24555554      57899988875

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=97.28  E-value=0.0004  Score=58.46  Aligned_cols=106  Identities=9%  Similarity=0.056  Sum_probs=73.1

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHH---HcCCCcc-ccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALE---KFGTGAG-GTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVAND  126 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~---~~G~gs~-~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~  126 (174)
                      -++|++++.    ..+|++++++.+.+.   .||...+ ....-.+......++++.||+++|.+  .+++.++|..|+.
T Consensus        24 iyld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~   99 (423)
T 3lvm_A           24 IYLDYSATT----PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDN   99 (423)
T ss_dssp             EECBTTTCC----CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred             EeecCCCcC----CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHH
Confidence            345555542    348888888888776   3443322 23333445678899999999999987  7889999999999


Q ss_pred             HHHHHhcc--cCCCCeeE--------------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        127 STLFTLGK--MIPYFTEL--------------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       127 ~~i~aL~~--~~~g~~~s--------------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                      .++.++..  .-+|..+.                    +.++.++.+     |+++||+.+++
T Consensus       100 ~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  162 (423)
T 3lvm_A          100 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD  162 (423)
T ss_dssp             HHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT
T ss_pred             HHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC
Confidence            99998872  00232221                    356667766     89999988865

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=97.27  E-value=0.00085  Score=56.20  Aligned_cols=85  Identities=12%  Similarity=0.018  Sum_probs=64.0

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh-cccCCCCeeE----
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL-GKMIPYFTEL----  142 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL-~~~~~g~~~s----  142 (174)
                      .|++++++.+.+.. +.       ..+......+||+.||+++|.+.++++++|..|+..++.++ .+  +|.++.    
T Consensus        35 ~~~~~~a~~~~~~~-~~-------~~~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~--~gd~vl~~~~  104 (391)
T 3dr4_A           35 DGNERDYVLECMDT-TW-------ISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIG--PGDEVIVPSL  104 (391)
T ss_dssp             CSSHHHHHHHHHHH-TC-------CSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCC--TTCEEEEESS
T ss_pred             CHHHHHHHHHHHHc-CC-------ccCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCC
Confidence            47888888887764 11       11356789999999999999999999999999999999998 54  344332    


Q ss_pred             -------------EEEEEecCC------CHHHHHHHHHH
Q psy16850        143 -------------IYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       143 -------------~~~~~f~HN------d~~~Le~~L~~  162 (174)
                                   +.++.++.+      |+++|++.++.
T Consensus       105 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  143 (391)
T 3dr4_A          105 TYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITP  143 (391)
T ss_dssp             SCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCT
T ss_pred             chHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCC
Confidence                         356666665      78888877653

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=97.23  E-value=0.00037  Score=58.11  Aligned_cols=107  Identities=11%  Similarity=0.006  Sum_probs=70.7

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHc-CCCccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKF-GTGAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVAND  126 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~-G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~  126 (174)
                      ++.-++|++++.    ..+|++++++.+.+++. +...+....-.+....++++++.||+++|.+  .+++.++|..|+.
T Consensus        19 ~~~iyld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~   94 (400)
T 3vax_A           19 SHMTYLDAAATT----RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNN   94 (400)
T ss_dssp             ---CCCCCCCCS----SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHH
T ss_pred             CCcEEecCCCCC----CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHH
Confidence            344466776664    34789999999988753 3222212222234577899999999999986  5777788889999


Q ss_pred             HHHHHhc----ccCCCC-eeE--------------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        127 STLFTLG----KMIPYF-TEL--------------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       127 ~~i~aL~----~~~~g~-~~s--------------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                      .++.++.    +  +|. .+.                    +.++.++.+     |+++||+.+++
T Consensus        95 ~~~~~l~~~~~~--~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  158 (400)
T 3vax_A           95 IALLGLAPYGER--TGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRP  158 (400)
T ss_dssp             HHHHTTHHHHHH--HTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCT
T ss_pred             HHHHHHHHhhcc--CCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCC
Confidence            9998886    3  343 222                    245556655     88888887754

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=97.22  E-value=0.00077  Score=58.49  Aligned_cols=105  Identities=11%  Similarity=0.035  Sum_probs=70.9

Q ss_pred             CeeEEEeccCcc-cCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC---CcEEEecchh
Q psy16850         51 EKEVTVYCSNDY-LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK---EAGLVFTSCY  122 (174)
Q Consensus        51 g~~~inf~SndY-LGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~---e~al~f~sGy  122 (174)
                      +..+|+|++... ..+-.+|++++++.+++++.+.    ..+-++...-+.+|++.||+++    |.   +..++.++|-
T Consensus        75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~  150 (448)
T 3aow_A           75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYAD----KALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQ  150 (448)
T ss_dssp             TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHH----HHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHH
T ss_pred             CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhH----HHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHH
Confidence            356899988754 3344578899999998876331    1122333344788999999999    85   4556666666


Q ss_pred             HHHHHHHHHhcccCCCCeeE-----------------EEEEEecC----CCHHHHHHHHH
Q psy16850        123 VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA----NTTDIIKEASK  161 (174)
Q Consensus       123 ~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H----Nd~~~Le~~L~  161 (174)
                      .++..++.++++  +|..+.                 +.++.+++    .|+++||+.|+
T Consensus       151 ~al~~~~~~l~~--~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~  208 (448)
T 3aow_A          151 QALDLIGRVFLN--PGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLK  208 (448)
T ss_dssp             HHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHh
Confidence            788888888865  454332                 24555555    58999999997

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.20  E-value=0.0019  Score=54.26  Aligned_cols=65  Identities=11%  Similarity=0.010  Sum_probs=54.2

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+.+||++||+++|.+++++|+||..|+..++.++.+  +|.+..                     +.+..++++|++
T Consensus        51 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~  128 (386)
T 1cs1_A           51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQ  128 (386)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHH
T ss_pred             CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC--CCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence            467899999999999999999999999999999998864  232211                     367788999999


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +||+.++.
T Consensus       129 ~l~~~i~~  136 (386)
T 1cs1_A          129 ALRAALAE  136 (386)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHhhcc
Confidence            99999974

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=97.17  E-value=0.00075  Score=55.63  Aligned_cols=85  Identities=15%  Similarity=-0.026  Sum_probs=62.2

Q ss_pred             CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh---cccCCCCeeE-
Q psy16850         67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL---GKMIPYFTEL-  142 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL---~~~~~g~~~s-  142 (174)
                      -+|++++++.+.++. +...        ......+||+.||+++|.+.++++++|..|+..++.++   .+  +|.++. 
T Consensus        11 ~~~~v~~a~~~~~~~-~~~~--------~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~--~gd~Vl~   79 (375)
T 2fnu_A           11 LDKEDKKAVLEVLNS-KQLT--------QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSA--DRNEIIT   79 (375)
T ss_dssp             CCHHHHHHHHHHHTS-SCCS--------SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCT--TSCEEEE
T ss_pred             CCHHHHHHHHHHHHc-Cccc--------CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCC--CCCEEEE
Confidence            478899998888754 2111        13578999999999999999999999999999999998   44  444332 


Q ss_pred             ----------------EEEEEecC-----CCHHHHHHHHHH
Q psy16850        143 ----------------IYFYRFLA-----NTTDIIKEASKE  162 (174)
Q Consensus       143 ----------------~~~~~f~H-----Nd~~~Le~~L~~  162 (174)
                                      +.++.++.     .|+++|++.+.+
T Consensus        80 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~  120 (375)
T 2fnu_A           80 TPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINE  120 (375)
T ss_dssp             CSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCT
T ss_pred             CCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCc
Confidence                            24555554     377888776643

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=97.16  E-value=0.0015  Score=55.72  Aligned_cols=65  Identities=18%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+...+||+.||+++|.+.+++++||..||..++.++..  +|.++.                     +.+..++.+|++
T Consensus        65 ~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~  142 (392)
T 3qhx_A           65 NPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLR--PGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLD  142 (392)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHH
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHH
Confidence            477899999999999999999999999999999998865  343322                     367788889999


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +|++.++.
T Consensus       143 ~l~~~i~~  150 (392)
T 3qhx_A          143 AVRAAIRP  150 (392)
T ss_dssp             HHHHHCCT
T ss_pred             HHHHhhCC
Confidence            99998865

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=97.15  E-value=0.0015  Score=57.79  Aligned_cols=79  Identities=19%  Similarity=0.154  Sum_probs=60.2

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecch
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sG  121 (174)
                      ..+|+++|||.++   .-||- .||+|.+|+.+.++++..++    .....++...+|.++|+++..   .+.+.+++||
T Consensus        60 D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~----~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sG  134 (456)
T 4atq_A           60 DVDGNSFIDLGSGIAVTSVGA-SDPAVVAAVQEAAAHFTHTC----FMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSG  134 (456)
T ss_dssp             ETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCCT----TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred             eCCCCEEEEccccHHHHhcCC-CCHHHHHHHHHHHhhccCcc----cCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCCh
Confidence            4789999999764   33553 39999999999998864321    222346778889999999985   4567888999


Q ss_pred             hHHHHHHHHH
Q psy16850        122 YVANDSTLFT  131 (174)
Q Consensus       122 y~aN~~~i~a  131 (174)
                      ..||-+.|..
T Consensus       135 sEA~e~Alkl  144 (456)
T 4atq_A          135 AEAVENAVKV  144 (456)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988863

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=97.11  E-value=0.0011  Score=55.79  Aligned_cols=87  Identities=10%  Similarity=0.058  Sum_probs=60.3

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHH--hC--CCcEEEecchhHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARL--HQ--KEAGLVFTSCYVAND  126 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~--~g--~e~al~f~sGy~aN~  126 (174)
                      ++.+|+|++|++ ++..+|.+++++.++++.++...+  ..-++....+.+|++.||++  +|  .++.+++++|....+
T Consensus        32 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al  108 (400)
T 3asa_A           32 QHTVINLSIGDT-TQPLNASVAEAFASSIARLSSPTT--CRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL  108 (400)
T ss_dssp             TSCCEECSSCCC-CCCCCHHHHHHHHHHHHHHTSSSC--CCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred             CCceEeccCCCC-CCCCCHHHHHHHHHHHhccccccc--ccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence            456899999987 667799999999999987653211  11122234578999999999  46  355677788877666


Q ss_pred             HHHHHhcccCCCCeeE
Q psy16850        127 STLFTLGKMIPYFTEL  142 (174)
Q Consensus       127 ~~i~aL~~~~~g~~~s  142 (174)
                      .++..+..  +|.++.
T Consensus       109 ~~~~~~~~--~gd~Vl  122 (400)
T 3asa_A          109 FRLLSFFG--PNQTVA  122 (400)
T ss_dssp             HHHHHHHC--SSCEEE
T ss_pred             HHHHHHcC--CCCEEE
Confidence            66666654  565443

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=97.11  E-value=0.00064  Score=56.23  Aligned_cols=74  Identities=9%  Similarity=-0.023  Sum_probs=55.4

Q ss_pred             CCCccchHHHHHHHHHcCCCccccccccC-----CchHHHHHHHHHHHHhCCC---cEEEe-cchhHHHHHHHHHhcccC
Q psy16850         66 SCHPKVKSAVREALEKFGTGAGGTRNISG-----NSLFHEKLEEDVARLHQKE---AGLVF-TSCYVANDSTLFTLGKMI  136 (174)
Q Consensus        66 ~~~p~v~~a~~~al~~~G~gs~~Sr~~~G-----~~~~~~~LE~~lA~~~g~e---~al~f-~sGy~aN~~~i~aL~~~~  136 (174)
                      ..+|++++++.+++..++ +.++|++..+     ...+++++++.+|+++|.+   .++++ ++|..++..++.++.+  
T Consensus        14 ~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~--   90 (362)
T 2c0r_A           14 ALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK--   90 (362)
T ss_dssp             CCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC--
T ss_pred             CCCHHHHHHHHHHHhhhh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCC--
Confidence            458899999999887663 4445544333     2346889999999999987   45566 7889999999999975  


Q ss_pred             CCCeeE
Q psy16850        137 PYFTEL  142 (174)
Q Consensus       137 ~g~~~s  142 (174)
                      +|.+..
T Consensus        91 ~gd~vl   96 (362)
T 2c0r_A           91 EGQTAN   96 (362)
T ss_dssp             TTCEEE
T ss_pred             CCCeEE
Confidence            676543

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=97.10  E-value=0.0031  Score=53.15  Aligned_cols=96  Identities=13%  Similarity=-0.030  Sum_probs=68.5

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      .+|+|+++.-- +  .|++++++.+.++. +        ..+......+||+.||+|+|.+.++++++|..|+..++.++
T Consensus        31 ~~id~~~~~~~-~--~~~v~~a~~~~~~~-~--------~y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~   98 (399)
T 2oga_A           31 PFLDLKAAYEE-L--RAETDAAIARVLDS-G--------RYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGL   98 (399)
T ss_dssp             CSCCHHHHHHH-T--HHHHHHHHHHHHHH-T--------CCSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHT
T ss_pred             cccccCcCCCC-C--CHHHHHHHHHHHhc-C--------CCCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHh
Confidence            46777765431 1  18889998888765 1        12234778999999999999999999999999999999998


Q ss_pred             -cccCCCCeeE-----------------EEEEEec------CCCHHHHHHHHHH
Q psy16850        133 -GKMIPYFTEL-----------------IYFYRFL------ANTTDIIKEASKE  162 (174)
Q Consensus       133 -~~~~~g~~~s-----------------~~~~~f~------HNd~~~Le~~L~~  162 (174)
                       .+  +|.++.                 +.++.++      +.|+++|++.+..
T Consensus        99 ~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  150 (399)
T 2oga_A           99 GIG--PGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITP  150 (399)
T ss_dssp             TCC--TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT
T ss_pred             CCC--CcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC
Confidence             54  343322                 2333333      5688999888754

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=97.08  E-value=0.00061  Score=55.98  Aligned_cols=73  Identities=12%  Similarity=0.131  Sum_probs=50.4

Q ss_pred             cCCeeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC--CcEEEecchhHHH
Q psy16850         49 DSEKEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK--EAGLVFTSCYVAN  125 (174)
Q Consensus        49 ~~g~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~--e~al~f~sGy~aN  125 (174)
                      .+|+++|+|++| ++++  .+|++++++.+.++.+. +.        ....+.+|++.||+++|.  +..+++++|..|+
T Consensus        23 ~~~~~~idl~~~~~~~~--~~~~v~~a~~~~~~~~~-~y--------~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al   91 (361)
T 3ftb_A           23 FKGRELLDYSSNINPLG--IPKSFLNNIDEGIKNLG-VY--------PDVNYRRLNKSIENYLKLKDIGIVLGNGASEII   91 (361)
T ss_dssp             -----CEETTCCCCTTC--SCHHHHTTHHHHHHGGG-SC--------CCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHH
T ss_pred             cCCCCEEEecCCCCCCC--CCHHHHHHHHHHHHHhc-CC--------CCccHHHHHHHHHHHhCCCcceEEEcCCHHHHH
Confidence            467889999999 5554  57999999999887631 11        113468999999999994  4556667777788


Q ss_pred             HHHHHHh
Q psy16850        126 DSTLFTL  132 (174)
Q Consensus       126 ~~~i~aL  132 (174)
                      ..++.++
T Consensus        92 ~~~~~~~   98 (361)
T 3ftb_A           92 ELSISLF   98 (361)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHc
Confidence            7777766

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=97.07  E-value=0.0037  Score=52.06  Aligned_cols=104  Identities=12%  Similarity=-0.034  Sum_probs=62.9

Q ss_pred             eeEEEeccCcccCCCC----CccchHHHHH-HHHHcCCCccccccccCCchHHHHHHHHHHHHhC--------CC--cEE
Q psy16850         52 KEVTVYCSNDYLGMSC----HPKVKSAVRE-ALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--------KE--AGL  116 (174)
Q Consensus        52 ~~~inf~SndYLGL~~----~p~v~~a~~~-al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e--~al  116 (174)
                      ..+|||+.+.|+.-..    +|+|++++.+ +++..+....  ....|.    .+|.+.||++++        .+  ..+
T Consensus        26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y--~~~~g~----~~lr~~la~~~~~~~~~~~~~~~~~i~   99 (397)
T 3fsl_A           26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLY--LPMEGL----NCYRHAIAPLLFGADHPVLKQQRVATI   99 (397)
T ss_dssp             SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCC--CCTTCC----HHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred             CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccC--CCCCch----HHHHHHHHHHHhcCCcccccccceEEE
Confidence            3589999996654332    3678888887 7765443211  112343    455555666653        23  456


Q ss_pred             EecchhHHHHHHH--HHhcccCCCCeeE-----------------EEEEEecC----C---CHHHHHHHHHHh
Q psy16850        117 VFTSCYVANDSTL--FTLGKMIPYFTEL-----------------IYFYRFLA----N---TTDIIKEASKEL  163 (174)
Q Consensus       117 ~f~sGy~aN~~~i--~aL~~~~~g~~~s-----------------~~~~~f~H----N---d~~~Le~~L~~~  163 (174)
                      ++++|..++..++  .++.+  +|.+..                 +.++.+++    +   |+++|++.+++.
T Consensus       100 ~t~g~~~a~~~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~  170 (397)
T 3fsl_A          100 QTLGGSGALKVGADFLKRYF--PESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL  170 (397)
T ss_dssp             EESHHHHHHHHHHHHHHHHC--TTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred             EcCCcHHHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence            6666777777663  34433  443332                 35677777    5   899999999864

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.00091  Score=57.63  Aligned_cols=78  Identities=15%  Similarity=-0.015  Sum_probs=55.8

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC----CcEEEecch
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK----EAGLVFTSC  121 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~----e~al~f~sG  121 (174)
                      .++.+|||++++ ..+..+|.+++++.+++++.+..      .++...-+.+|+++||+++    |.    +..++.++|
T Consensus        55 ~~~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~  127 (447)
T 3b46_A           55 QGRELINLGQGF-FSYSPPQFAIKEAQKALDIPMVN------QYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGA  127 (447)
T ss_dssp             TTSCCEECCCCS-CSSCCCHHHHHHHHHHTTSGGGG------SCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHH
T ss_pred             cCCCeEEccCCC-CCCCCCHHHHHHHHHHHhCcCCC------CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCH
Confidence            456789999885 57778899999999988653311      1112222567778888876    43    457788888


Q ss_pred             hHHHHHHHHHhcc
Q psy16850        122 YVANDSTLFTLGK  134 (174)
Q Consensus       122 y~aN~~~i~aL~~  134 (174)
                      ..|+..++.++..
T Consensus       128 ~~al~~~~~~l~~  140 (447)
T 3b46_A          128 NEGILSCLMGLLN  140 (447)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999875

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=97.04  E-value=0.0039  Score=51.33  Aligned_cols=65  Identities=12%  Similarity=-0.075  Sum_probs=51.4

Q ss_pred             chHHHHHHHHHHHHhCCC--c-EEEecchhHHHHHHHHHhcccCCCCeeE-------------------EEEEEecC---
Q psy16850         96 SLFHEKLEEDVARLHQKE--A-GLVFTSCYVANDSTLFTLGKMIPYFTEL-------------------IYFYRFLA---  150 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e--~-al~f~sGy~aN~~~i~aL~~~~~g~~~s-------------------~~~~~f~H---  150 (174)
                      ..+.+++++.||+++|.+  + +++.++|..|+..++.++.+  +|....                   +.++.+++   
T Consensus        52 ~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~  129 (386)
T 2dr1_A           52 RKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVS--KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG  129 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhc--CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC
Confidence            578999999999999986  4 56778999999999999865  443321                   35666666   


Q ss_pred             --CCHHHHHHHHHH
Q psy16850        151 --NTTDIIKEASKE  162 (174)
Q Consensus       151 --Nd~~~Le~~L~~  162 (174)
                        .|+++||+.+++
T Consensus       130 ~~~d~~~l~~~l~~  143 (386)
T 2dr1_A          130 KAVKPEDLDDALRK  143 (386)
T ss_dssp             CCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhc
Confidence              799999999975

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=97.04  E-value=0.0011  Score=54.62  Aligned_cols=76  Identities=13%  Similarity=0.015  Sum_probs=51.1

Q ss_pred             ecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHH
Q psy16850         48 TDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVAN  125 (174)
Q Consensus        48 ~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN  125 (174)
                      ..+|+.+|+|++|+ ..+..+|++++++.+++..+. +       ++.. ...+|+++||+++|.+  ..+++++|..++
T Consensus        11 ~~~g~~~id~~~~~-~~~~~~~~v~~a~~~~~~~~~-~-------y~~~-~~~~lr~~la~~~~~~~~~i~~t~g~~~al   80 (350)
T 3fkd_A           11 TPLSSEIVNFSTTV-WTDGDKDHLEKHLVENLNCIR-H-------YPEP-DAGTLRQMLAKRNSVDNNAILVTNGPTAAF   80 (350)
T ss_dssp             -----CCEECSCCS-CCCSCCHHHHHHHHHTGGGGG-S-------CCCT-TCHHHHHHHHHHTTCCGGGEEEESHHHHHH
T ss_pred             hhccccEEEccCCC-CCCCCCHHHHHHHHHhHhHHh-c-------CCCC-cHHHHHHHHHHHhCcCHHHEEEcCCHHHHH
Confidence            45778999999994 344578999999888763211 1       1111 2378999999999964  567777777788


Q ss_pred             HHHHHHhc
Q psy16850        126 DSTLFTLG  133 (174)
Q Consensus       126 ~~~i~aL~  133 (174)
                      ..++.++.
T Consensus        81 ~~~~~~l~   88 (350)
T 3fkd_A           81 YQIAQAFR   88 (350)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHC
Confidence            88888775

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=97.03  E-value=0.0052  Score=51.76  Aligned_cols=100  Identities=16%  Similarity=0.042  Sum_probs=68.4

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----CC----C-cEEEecchhH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----QK----E-AGLVFTSCYV  123 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g~----e-~al~f~sGy~  123 (174)
                      .+|+|++++. .+..+|.+++++.+++++ +..      .++...-+.+|++.||+++    |.    + ..++.++|..
T Consensus        26 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~~------~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~   97 (411)
T 2o0r_A           26 GAVNLGQGFP-DEDGPPKMLQAAQDAIAG-GVN------QYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATE   97 (411)
T ss_dssp             TCEESSCSSC-SSCCCHHHHHHHHHHHHT-TCC------SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHH
T ss_pred             CeeeccCcCC-CCCCCHHHHHHHHHHHhc-CCC------CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHH
Confidence            3789988864 667789999999998875 110      1112223578888888886    53    3 6778888899


Q ss_pred             HHHHHHHHhcccCCCCeeE-----------------EEEEEecC--------CCHHHHHHHHHH
Q psy16850        124 ANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA--------NTTDIIKEASKE  162 (174)
Q Consensus       124 aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H--------Nd~~~Le~~L~~  162 (174)
                      |+..++.++.+  +|.++.                 +.++.+++        .|+++|++.++.
T Consensus        98 al~~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~  159 (411)
T 2o0r_A           98 AIAAAVLGLVE--PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP  159 (411)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT
T ss_pred             HHHHHHHHhcC--CCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc
Confidence            99999998865  444332                 23444443        589999988854

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=97.03  E-value=0.0031  Score=53.45  Aligned_cols=65  Identities=18%  Similarity=0.064  Sum_probs=54.0

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+...+||+.||+++|.+.+++++||..|+..++.++.+  +|.++.                     +.++.++++|++
T Consensus        58 ~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~--~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~  135 (389)
T 3acz_A           58 NPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQ--KGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVE  135 (389)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCC--TTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHH
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHH
Confidence            578999999999999999999999999999999988764  343322                     367788889999


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +|++.++.
T Consensus       136 ~l~~~i~~  143 (389)
T 3acz_A          136 KVKAAWKP  143 (389)
T ss_dssp             HHHHTCCT
T ss_pred             HHHHhcCC
Confidence            99988764

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=97.02  E-value=0.0032  Score=52.55  Aligned_cols=104  Identities=13%  Similarity=-0.061  Sum_probs=68.2

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccC--CchHHHHHHHHHHHHhCCC-cEEEecchhHHHHH-
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISG--NSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDS-  127 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G--~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~-  127 (174)
                      ..++|++++.    ..+|++++++.+.++.+....+ +....|  ......++++.||+++|.+ +.++|++|...++. 
T Consensus        27 ~~~ld~~~~~----~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~  101 (406)
T 3cai_A           27 WVHFDAPAGM----LIPDSVATTVSTAFRRSGASTV-GAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSL  101 (406)
T ss_dssp             CEECBGGGCC----CCCHHHHHHHHHHHHHCCSSSC-SSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHH
T ss_pred             eEEEeCCCcC----CCCHHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHH
Confidence            4567777775    4589999999999987543322 222121  3467899999999999986 45666666555554 


Q ss_pred             HHHHh---cccCCCCee---------------------EEEEEEecCC------CHHHHHHHHHH
Q psy16850        128 TLFTL---GKMIPYFTE---------------------LIYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       128 ~i~aL---~~~~~g~~~---------------------s~~~~~f~HN------d~~~Le~~L~~  162 (174)
                      ++.++   .+  +|..+                     .+.++.++++      |+++||+.+..
T Consensus       102 ~~~~l~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~  164 (406)
T 3cai_A          102 LAEASSSRAG--LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK  164 (406)
T ss_dssp             HHHHTGGGGB--TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT
T ss_pred             HHHHHhhccC--CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC
Confidence            44555   22  23221                     1356777776      88999888753

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=96.96  E-value=0.0022  Score=54.97  Aligned_cols=63  Identities=19%  Similarity=0.083  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHH
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDI  155 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~  155 (174)
                      +...+||+.||+++|.+++++|+||..|+..++. +.+  +|.++.                     +.+..++++|+++
T Consensus        67 p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~--~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~  143 (403)
T 3cog_A           67 PTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLK--AGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKL  143 (403)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSC--TTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHH
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhC--CCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHH
Confidence            6689999999999999999999999999998888 654  333221                     4677888999999


Q ss_pred             HHHHHHH
Q psy16850        156 IKEASKE  162 (174)
Q Consensus       156 Le~~L~~  162 (174)
                      |++.++.
T Consensus       144 l~~~i~~  150 (403)
T 3cog_A          144 LEAAITP  150 (403)
T ss_dssp             HHHHCCT
T ss_pred             HHHhcCc
Confidence            9988864

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=96.93  E-value=0.0012  Score=57.95  Aligned_cols=110  Identities=10%  Similarity=-0.022  Sum_probs=74.1

Q ss_pred             eEEEeccCcccCC--CCCccchHHHHHHHHHcCCCc-cccccccCCchHHHHHHHHHHHHhCCC----cE--EEecchhH
Q psy16850         53 EVTVYCSNDYLGM--SCHPKVKSAVREALEKFGTGA-GGTRNISGNSLFHEKLEEDVARLHQKE----AG--LVFTSCYV  123 (174)
Q Consensus        53 ~~inf~SndYLGL--~~~p~v~~a~~~al~~~G~gs-~~Sr~~~G~~~~~~~LE~~lA~~~g~e----~a--l~f~sGy~  123 (174)
                      ..++|.++.|+|.  ..+|.+.+++.+++..+-... .......+...+..++.+.+|+++|.+    .+  +++++|..
T Consensus        92 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~  171 (514)
T 3mad_A           92 ESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTE  171 (514)
T ss_dssp             HHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHH
T ss_pred             cCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHH
Confidence            3468889999994  457888888888876543221 111122233345556666679999987    45  99999999


Q ss_pred             HHHHHHHHhcccC------CCCeeE-----------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        124 ANDSTLFTLGKMI------PYFTEL-----------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       124 aN~~~i~aL~~~~------~g~~~s-----------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                      ||..++.++....      ++..+.                 +.++.++.+     |+++||+.|.+
T Consensus       172 a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~  238 (514)
T 3mad_A          172 SLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITP  238 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhcc
Confidence            9999999886411      002221                 367777777     99999998865

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=96.91  E-value=0.0015  Score=53.25  Aligned_cols=61  Identities=20%  Similarity=0.083  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHHHHH
Q psy16850        100 EKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDIIKE  158 (174)
Q Consensus       100 ~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~Le~  158 (174)
                      ++||+.||+++|.+++++++||..|+..++.++.+  +|.+..                     +.+..++++|+++|++
T Consensus         1 ~~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~--~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~   78 (331)
T 1pff_A            1 SALEGKIAKLEHAEACAATASGMGAIAASVWTFLK--AGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEK   78 (331)
T ss_dssp             CHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHH
T ss_pred             ChHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHH
Confidence            37999999999999999999999999999998865  343221                     3567788899999988


Q ss_pred             HHHH
Q psy16850        159 ASKE  162 (174)
Q Consensus       159 ~L~~  162 (174)
                      .++.
T Consensus        79 ~i~~   82 (331)
T 1pff_A           79 HLKP   82 (331)
T ss_dssp             TCCT
T ss_pred             hhcC
Confidence            8763

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=96.90  E-value=0.0025  Score=54.58  Aligned_cols=72  Identities=11%  Similarity=-0.042  Sum_probs=54.8

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF  130 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~  130 (174)
                      |+.+|||+++-..     |.|++++.+++.. |.      ..++......+|+++||+++|.+.++++++|..||..++.
T Consensus        42 g~~ylD~~~~~~~-----~~v~~a~~~~~~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~  109 (467)
T 1ax4_A           42 SAVYIDLLTDSGT-----NAMSDHQWAAMIT-GD------EAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFP  109 (467)
T ss_dssp             GGCSEECSCSSSC-----CCEEHHHHHHHHT-CC------CCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHH
T ss_pred             CceeeecccCcCC-----HHHHHHHHHHHhh-cc------cccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHH
Confidence            4556777553222     8999998887752 21      1234556789999999999999999999999999999999


Q ss_pred             Hhcc
Q psy16850        131 TLGK  134 (174)
Q Consensus       131 aL~~  134 (174)
                      ++..
T Consensus       110 ~~~~  113 (467)
T 1ax4_A          110 VLLK  113 (467)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=96.90  E-value=0.0056  Score=51.21  Aligned_cols=107  Identities=12%  Similarity=-0.044  Sum_probs=66.3

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCC--CccccccccCCchHHHHHHHHHHHHhC--------CCcEEE--ecc
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGT--GAGGTRNISGNSLFHEKLEEDVARLHQ--------KEAGLV--FTS  120 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~--gs~~Sr~~~G~~~~~~~LE~~lA~~~g--------~e~al~--f~s  120 (174)
                      .+|||+.++|+.....|.+.+++.+++.++..  +..+.....|    +.+|-+.+|++++        .+..++  +++
T Consensus        29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G  104 (401)
T 7aat_A           29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAG----LADFTRASAELALGENSEAFKSGRYVTVQGIS  104 (401)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred             CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCC----CHHHHHHHHHHhcCCCccccccCceEEEecCc
Confidence            37999999999998888876666665544311  2222222234    4566677777775        345544  788


Q ss_pred             hhHHHHHHHHHhccc-CCCCeeE-----------------EEEEEecCC-------CHHHHHHHHHHh
Q psy16850        121 CYVANDSTLFTLGKM-IPYFTEL-----------------IYFYRFLAN-------TTDIIKEASKEL  163 (174)
Q Consensus       121 Gy~aN~~~i~aL~~~-~~g~~~s-----------------~~~~~f~HN-------d~~~Le~~L~~~  163 (174)
                      |..++..++.++... -+|.+..                 +.++.++.+       |+++|++.|++.
T Consensus       105 ~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~  172 (401)
T 7aat_A          105 GTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI  172 (401)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhC
Confidence            999998887776410 1444332                 245555543       677788877763

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=96.87  E-value=0.0056  Score=52.01  Aligned_cols=86  Identities=13%  Similarity=0.015  Sum_probs=63.6

Q ss_pred             CCCCccchHHHHHHHHHcCCCccccccccCC-chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE-
Q psy16850         65 MSCHPKVKSAVREALEKFGTGAGGTRNISGN-SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL-  142 (174)
Q Consensus        65 L~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~-~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s-  142 (174)
                      +...|++++++.++++. +.        ++. ...+.+||+.||+|+|.+.++++++|..|+..++.++.   +|.++. 
T Consensus        28 ~~~p~~~~~a~~~~~~~-~~--------y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~---~gd~Vlv   95 (424)
T 2po3_A           28 RIDRARLYERLDRALDS-QW--------LSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG---LTGEVIM   95 (424)
T ss_dssp             CCCHHHHHHHHHHHHHH-TC--------CSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT---CCSEEEE
T ss_pred             CCChHHHHHHHHHHHhc-CC--------cccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC---CCCEEEE
Confidence            33456889998888764 21        333 57899999999999999999999999999999999984   233322 


Q ss_pred             ----------------EEEEEecCC------CHHHHHHHHHH
Q psy16850        143 ----------------IYFYRFLAN------TTDIIKEASKE  162 (174)
Q Consensus       143 ----------------~~~~~f~HN------d~~~Le~~L~~  162 (174)
                                      +.++.++.+      |+++|++.+..
T Consensus        96 ~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~  137 (424)
T 2po3_A           96 PSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTP  137 (424)
T ss_dssp             ESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCT
T ss_pred             CCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCc
Confidence                            255666654      77888776643

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=96.79  E-value=0.0018  Score=53.63  Aligned_cols=73  Identities=16%  Similarity=0.041  Sum_probs=51.1

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecc-hhHHHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTS-CYVANDS  127 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~s-Gy~aN~~  127 (174)
                      +|+++|+|++|+ ..+..+|++++++.++++...        .++. ..+.+|++.||+++|.+ +.++|++ |-.++..
T Consensus        22 ~~~~~idl~~~~-~~~~~~~~v~~a~~~~~~~~~--------~y~~-~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~   91 (364)
T 1lc5_A           22 SPDQLLDFSANI-NPLGMPVSVKRALIDNLDCIE--------RYPD-ADYFHLHQALARHHQVPASWILAGNGETESIFT   91 (364)
T ss_dssp             CGGGSEECSSCC-CTTCCCHHHHHHHHHTGGGGG--------SCCC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHH
T ss_pred             CccceEEecccc-CCCCCCHHHHHHHHHHHHHhh--------cCCC-CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHH
Confidence            567899999987 456678999999988775410        1111 23689999999999964 3455555 5566666


Q ss_pred             HHHHh
Q psy16850        128 TLFTL  132 (174)
Q Consensus       128 ~i~aL  132 (174)
                      ++.++
T Consensus        92 ~~~~~   96 (364)
T 1lc5_A           92 VASGL   96 (364)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            66666

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=96.78  E-value=0.005  Score=53.13  Aligned_cols=105  Identities=14%  Similarity=0.025  Sum_probs=69.8

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcC----CCccccccccCCchHHHHHHHHHHHHh-CCC-------cEEE--e
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFG----TGAGGTRNISGNSLFHEKLEEDVARLH-QKE-------AGLV--F  118 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G----~gs~~Sr~~~G~~~~~~~LE~~lA~~~-g~e-------~al~--f  118 (174)
                      ..|||+..+|+....+|.+.+++.++.++..    .+..+.....|    ..+|.+.+|+++ |.+       ..++  +
T Consensus        50 ~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G----~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t  125 (448)
T 3meb_A           50 KKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAG----FPLFLEAAQFLMFGKDSKAAQEGRIASCQS  125 (448)
T ss_dssp             TCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred             CeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcc----hHHHHHHHHHHhcCCCccccCcCcEEEEEC
Confidence            3799999999999999999999999854432    22222222333    567888888887 754       5666  7


Q ss_pred             cchhHHHHH--HHHHhcccCCCCeeE---------------------EEEEEecC---C-----CHHHHHHHHHHh
Q psy16850        119 TSCYVANDS--TLFTLGKMIPYFTEL---------------------IYFYRFLA---N-----TTDIIKEASKEL  163 (174)
Q Consensus       119 ~sGy~aN~~--~i~aL~~~~~g~~~s---------------------~~~~~f~H---N-----d~~~Le~~L~~~  163 (174)
                      ++|..|+..  .+.++..  +|.+..                     +.++.+++   +     |+++|++.|++.
T Consensus       126 ~ggt~al~l~~~~~~~~~--~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~  199 (448)
T 3meb_A          126 LSGTGSLHIGFEFLHLWM--PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSA  199 (448)
T ss_dssp             SHHHHHHHHHHHHHHHHC--TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHHHhC--CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhC
Confidence            888888854  4555543  232211                     23445554   4     888998888864

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=96.73  E-value=0.0049  Score=53.00  Aligned_cols=66  Identities=17%  Similarity=0.037  Sum_probs=51.5

Q ss_pred             CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee----------------------EEEEEEecCCC
Q psy16850         95 NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE----------------------LIYFYRFLANT  152 (174)
Q Consensus        95 ~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~----------------------s~~~~~f~HNd  152 (174)
                      ..+...+||+.||++.|.+.+++|+||..|+.+ +.+++.  +|.++                      .+.+..++++|
T Consensus        65 ~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d  141 (400)
T 3nmy_A           65 HNPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELLD--AGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTD  141 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSC--TTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTS
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHcC--CCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCC
Confidence            357899999999999999999999999888877 445554  33322                      24667788999


Q ss_pred             HHHHHHHHHHh
Q psy16850        153 TDIIKEASKEL  163 (174)
Q Consensus       153 ~~~Le~~L~~~  163 (174)
                      +++||+.++..
T Consensus       142 ~~~l~~~i~~~  152 (400)
T 3nmy_A          142 PAAFKAAIRAD  152 (400)
T ss_dssp             HHHHHHHCCTT
T ss_pred             HHHHHHHhccC
Confidence            99999988653

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=96.65  E-value=0.0013  Score=55.84  Aligned_cols=102  Identities=12%  Similarity=-0.138  Sum_probs=67.2

Q ss_pred             eeEEEeccCcccCCCCCccc--hHHHHHHHHHcCCCccccccccCCch--HHHHHHHHHHHHh-----CC--Cc---EEE
Q psy16850         52 KEVTVYCSNDYLGMSCHPKV--KSAVREALEKFGTGAGGTRNISGNSL--FHEKLEEDVARLH-----QK--EA---GLV  117 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v--~~a~~~al~~~G~gs~~Sr~~~G~~~--~~~~LE~~lA~~~-----g~--e~---al~  117 (174)
                      +.+|+|+++++..+..+|.+  ++++.+.++..        ...++.+  -+.+|++.||+++     +.  +.   .++
T Consensus        47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~  118 (430)
T 2x5f_A           47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPD--------EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIV  118 (430)
T ss_dssp             TCSEECCCSSCEETTEECCCHHHHTTBSSCCGG--------GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEE
T ss_pred             CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcc--------cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEE
Confidence            45899999998323346777  66665544321        1222222  3789999999999     54  45   677


Q ss_pred             ecchhHHHHHHHHHhcccCCCCee------------------EEEEEEecC------CCHHHHHHHHHHh
Q psy16850        118 FTSCYVANDSTLFTLGKMIPYFTE------------------LIYFYRFLA------NTTDIIKEASKEL  163 (174)
Q Consensus       118 f~sGy~aN~~~i~aL~~~~~g~~~------------------s~~~~~f~H------Nd~~~Le~~L~~~  163 (174)
                      .++|..|+..++.++.+  +|.+.                  .+.++.+++      .|+++|++.|++.
T Consensus       119 t~g~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~  186 (430)
T 2x5f_A          119 TNALTHGLSLVGDLFVN--QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSY  186 (430)
T ss_dssp             ESHHHHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHC
T ss_pred             cCCchHHHHHHHHHHhC--CCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhc
Confidence            77779999999999865  33222                  123444543      4789999999863

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=96.63  E-value=0.0098  Score=49.55  Aligned_cols=98  Identities=12%  Similarity=-0.000  Sum_probs=66.0

Q ss_pred             cccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcE--E-EecchhHHHHHHHHHhcccC
Q psy16850         61 DYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAG--L-VFTSCYVANDSTLFTLGKMI  136 (174)
Q Consensus        61 dYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~a--l-~f~sGy~aN~~~i~aL~~~~  136 (174)
                      .++-|.. .+.+.+++.+++.+...+...    ........++++.||+++|.+..  + +.+||..++..++.++.+  
T Consensus        11 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~--   84 (416)
T 3isl_A           11 LRTIMTPGPVEVDPRVLRVMSTPVVGQFD----PAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIE--   84 (416)
T ss_dssp             CCEECSSSSCCCCHHHHHHTTSCCCCTTS----HHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCC--
T ss_pred             cceeecCCCcCcCHHHHHHhcccCCCCcc----HHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcC--
Confidence            3444554 345777888887664433211    11256789999999999998764  3 557888999999998865  


Q ss_pred             CCCeeE-------------------EEEEEecCC-----CHHHHHHHHHHhc
Q psy16850        137 PYFTEL-------------------IYFYRFLAN-----TTDIIKEASKELQ  164 (174)
Q Consensus       137 ~g~~~s-------------------~~~~~f~HN-----d~~~Le~~L~~~~  164 (174)
                      +|.+..                   +.++.++.+     |+++||+.+++..
T Consensus        85 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~  136 (416)
T 3isl_A           85 PEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVK  136 (416)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHC
T ss_pred             CCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCC
Confidence            443322                   245556655     9999999998533

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=96.63  E-value=0.0027  Score=54.14  Aligned_cols=63  Identities=21%  Similarity=0.082  Sum_probs=49.7

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+.+||+.||+++|.+++++|+||..||..++. +++  +|.++.                     +.+..++++| +
T Consensus        54 ~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~  129 (393)
T 1n8p_A           54 NPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLP--QGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-N  129 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSC--SSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-H
T ss_pred             ChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcC--CCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-H
Confidence            36789999999999999999999999999999999 765  343322                     3456677777 8


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +||+.++.
T Consensus       130 ~l~~~i~~  137 (393)
T 1n8p_A          130 DLPQLIKE  137 (393)
T ss_dssp             HHHHHSCS
T ss_pred             HHHHhccc
Confidence            88887753

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=96.43  E-value=0.0025  Score=51.86  Aligned_cols=97  Identities=14%  Similarity=0.009  Sum_probs=65.7

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC----cEEEecchhHHHHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE----AGLVFTSCYVANDSTL  129 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e----~al~f~sGy~aN~~~i  129 (174)
                      +++|+.+-   +..+|+|++++.+.   ++  ......   ....+.+|++.||+++|.+    .++++++|..|+..++
T Consensus         5 ~~~~~~gp---~~~~~~v~~a~~~~---~~--~~~~~~---~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~   73 (366)
T 1m32_A            5 YLLLTPGP---LTTSRTVKEAMLFD---SC--TWDDDY---NIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVL   73 (366)
T ss_dssp             CEECSSSS---CCCCHHHHHTTCCC---CC--TTSHHH---HTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHH
T ss_pred             cccccCCC---cCCCHHHHHHHhhh---hc--CCCHHH---HHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHH
Confidence            57787773   34688888887663   22  111000   1267899999999999953    4889999999999999


Q ss_pred             HHhcccCCCCeeE-------------------EEEE-----EecCCCHHHHHHHHHHh
Q psy16850        130 FTLGKMIPYFTEL-------------------IYFY-----RFLANTTDIIKEASKEL  163 (174)
Q Consensus       130 ~aL~~~~~g~~~s-------------------~~~~-----~f~HNd~~~Le~~L~~~  163 (174)
                      .++..  +|....                   +.++     ...+.|+++||+.+++.
T Consensus        74 ~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~  129 (366)
T 1m32_A           74 GSALG--PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD  129 (366)
T ss_dssp             HHSCC--TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC
T ss_pred             HHhcC--CCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC
Confidence            99864  332211                   1222     23468999999999874

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=96.39  E-value=0.024  Score=47.94  Aligned_cols=108  Identities=10%  Similarity=-0.045  Sum_probs=62.7

Q ss_pred             eeEEEeccCcccCCCC----CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CC---cEEEecch
Q psy16850         52 KEVTVYCSNDYLGMSC----HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KE---AGLVFTSC  121 (174)
Q Consensus        52 ~~~inf~SndYLGL~~----~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e---~al~f~sG  121 (174)
                      ..+|||+...|+.-..    .|.|++++.++++..+..  +-....|...+.+.+.+.+....+   .+   ..++.++|
T Consensus        49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~  126 (420)
T 4f4e_A           49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPR--GYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGG  126 (420)
T ss_dssp             SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred             CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCC--CCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCcc
Confidence            4689999997664332    368888888888762221  111234544555554444444333   23   34555566


Q ss_pred             hHHHHHH--HHHhcccCCCCeeE-----------------EEEEEecC----C---CHHHHHHHHHHh
Q psy16850        122 YVANDST--LFTLGKMIPYFTEL-----------------IYFYRFLA----N---TTDIIKEASKEL  163 (174)
Q Consensus       122 y~aN~~~--i~aL~~~~~g~~~s-----------------~~~~~f~H----N---d~~~Le~~L~~~  163 (174)
                      ..|+..+  +.++..  +|..+.                 +.++.+++    +   |+++|++.|++.
T Consensus       127 t~al~~~~~~~~~~~--~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  192 (420)
T 4f4e_A          127 TGALKIGADFLRTLN--PKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY  192 (420)
T ss_dssp             HHHHHHHHHHHHHHC--TTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhC--CCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC
Confidence            6666666  334444  444332                 24566666    4   899999999865

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=96.38  E-value=0.022  Score=47.22  Aligned_cols=66  Identities=12%  Similarity=0.012  Sum_probs=50.8

Q ss_pred             chHHHHHHHHHHHHhCCC---cEEEecchhHHHHHHHHHhcccCCCCeeE-------------------EEEEEec----
Q psy16850         96 SLFHEKLEEDVARLHQKE---AGLVFTSCYVANDSTLFTLGKMIPYFTEL-------------------IYFYRFL----  149 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e---~al~f~sGy~aN~~~i~aL~~~~~g~~~s-------------------~~~~~f~----  149 (174)
                      ..+.+++++.+|+++|.+   .+++.++|..|+..++.++..  +|.+..                   +.++.++    
T Consensus        66 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~  143 (393)
T 1vjo_A           66 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE--PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG  143 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccC--CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC
Confidence            468899999999999986   477778999999999999865  343222                   2445555    


Q ss_pred             -CCCHHHHHHHHHHh
Q psy16850        150 -ANTTDIIKEASKEL  163 (174)
Q Consensus       150 -HNd~~~Le~~L~~~  163 (174)
                       +.|+++||+.+++.
T Consensus       144 ~~~d~~~l~~~l~~~  158 (393)
T 1vjo_A          144 EVFSLEELRTALETH  158 (393)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhC
Confidence             58999999999863

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=96.30  E-value=0.0075  Score=50.46  Aligned_cols=80  Identities=18%  Similarity=0.079  Sum_probs=53.2

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHH-cCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHH-
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEK-FGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVAND-  126 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~-~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~-  126 (174)
                      ++..++|++++   | ..+|++++++.++++. ||.....++...|....+.++++.||+++|.+ +.++|++|...++ 
T Consensus        27 ~~~~yld~~~~---~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~  102 (416)
T 1qz9_A           27 EGVIYLDGNSL---G-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLF  102 (416)
T ss_dssp             TTCEECCTTTS---C-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHH
T ss_pred             CCeEeecCCCc---C-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHH
Confidence            34455666554   3 4588899999998875 45433333333355688999999999999975 4566666666555 


Q ss_pred             HHHHHhc
Q psy16850        127 STLFTLG  133 (174)
Q Consensus       127 ~~i~aL~  133 (174)
                      .++.++.
T Consensus       103 ~al~~~~  109 (416)
T 1qz9_A          103 KVLSAAL  109 (416)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            5666654

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=96.26  E-value=0.033  Score=46.03  Aligned_cols=102  Identities=12%  Similarity=-0.044  Sum_probs=64.1

Q ss_pred             EeccCcccCCCCCcc-chHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc---EEEecchhHHHHHHHHH
Q psy16850         56 VYCSNDYLGMSCHPK-VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA---GLVFTSCYVANDSTLFT  131 (174)
Q Consensus        56 nf~SndYLGL~~~p~-v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~---al~f~sGy~aN~~~i~a  131 (174)
                      +|.+..+|.++..|. +.+++.+++.+.-.+. -++   .......+|++.||+++|.+.   .++.++|..++..++.+
T Consensus        13 ~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~~~-~~~---~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~   88 (396)
T 2ch1_A           13 PLIIPEKIMMGPGPSNCSKRVLTAMTNTVLSN-FHA---ELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSN   88 (396)
T ss_dssp             CCCCCCCBCCSSSSCCCCHHHHHHTTSCCCCT-TCH---HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCcceeecCCCCCCCHHHHHHhccccccC-CCh---hHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHH
Confidence            344555565655443 4556666654432110 011   012468999999999999864   45667789999999999


Q ss_pred             hcccCCCCeeE-------------------EEEEEec-----CCCHHHHHHHHHHh
Q psy16850        132 LGKMIPYFTEL-------------------IYFYRFL-----ANTTDIIKEASKEL  163 (174)
Q Consensus       132 L~~~~~g~~~s-------------------~~~~~f~-----HNd~~~Le~~L~~~  163 (174)
                      +..  +|.+..                   +.++.++     +.|+++|++.+++.
T Consensus        89 ~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~  142 (396)
T 2ch1_A           89 LLE--EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELH  142 (396)
T ss_dssp             HCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHH
T ss_pred             hcC--CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhC
Confidence            865  343322                   2444454     57999999999863

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=96.25  E-value=0.0046  Score=51.01  Aligned_cols=79  Identities=11%  Similarity=0.037  Sum_probs=55.7

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCC-CccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHHHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGT-GAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDSTLF  130 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~-gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~i~  130 (174)
                      .++|..+. .| ..+|++++++.++++.... +..+++........+.+|++.||+++|.+  .+++.++|..|+..++.
T Consensus        17 ~i~l~~~~-~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~   94 (390)
T 1elu_A           17 KTYFNFGG-QG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLW   94 (390)
T ss_dssp             SEECCTTT-CC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHH
T ss_pred             eEEecCCc-cC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHh
Confidence            46666666 34 2357899999998876431 11112121112367899999999999976  68888999999999999


Q ss_pred             Hh-cc
Q psy16850        131 TL-GK  134 (174)
Q Consensus       131 aL-~~  134 (174)
                      ++ ..
T Consensus        95 ~~~~~   99 (390)
T 1elu_A           95 GLDWH   99 (390)
T ss_dssp             HSCCC
T ss_pred             CCCCC
Confidence            98 44

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=96.25  E-value=0.026  Score=46.20  Aligned_cols=67  Identities=9%  Similarity=-0.037  Sum_probs=50.5

Q ss_pred             chHHHHHHHHHHHHhCCCc----EEEecchhHHHHHHHHHhcccCCCCeeE-------------------EEEEEecCC-
Q psy16850         96 SLFHEKLEEDVARLHQKEA----GLVFTSCYVANDSTLFTLGKMIPYFTEL-------------------IYFYRFLAN-  151 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~----al~f~sGy~aN~~~i~aL~~~~~g~~~s-------------------~~~~~f~HN-  151 (174)
                      ...+.++++.+|+++|.+.    +++.++|..|+. ++.++.+  +|.+..                   +.++.++.+ 
T Consensus        34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  110 (384)
T 3zrp_A           34 VEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLK--PNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSP  110 (384)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCC--TTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCST
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcC--CCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCC
Confidence            5688999999999999886    788888999999 8888865  343221                   245555544 


Q ss_pred             ----CHHHHHHHHHHhcc
Q psy16850        152 ----TTDIIKEASKELQE  165 (174)
Q Consensus       152 ----d~~~Le~~L~~~~~  165 (174)
                          |+++||+.+++...
T Consensus       111 ~~~~d~~~l~~~i~~~~~  128 (384)
T 3zrp_A          111 GDYVKPGEVEEEVRKSEY  128 (384)
T ss_dssp             TCCCCHHHHHHHHHHSCE
T ss_pred             CCCCCHHHHHHHHHhCCC
Confidence                99999999987433

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=96.23  E-value=0.019  Score=50.21  Aligned_cols=109  Identities=10%  Similarity=-0.009  Sum_probs=69.4

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHH----HHHhCCC-----------cEEEe
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDV----ARLHQKE-----------AGLVF  118 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~l----A~~~g~e-----------~al~f  118 (174)
                      ...|.+..|+|.-..|....++...+-..+.+..+  ......+...+||+++    ++++|.+           .++++
T Consensus        68 ~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~--~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t  145 (475)
T 3k40_A           68 VTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIG--FTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQ  145 (475)
T ss_dssp             CCCTTCTTBCCSSCCCCCHHHHHHHHHHHHHCCCS--SSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEE
T ss_pred             CCCCCCcCceeeCCCCCcHHHHHHHHHHHHhCccc--cCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEc
Confidence            55688999999986655443333322222222222  2233457788888876    6667777           47888


Q ss_pred             cchhHHHHHHHHHhccc--------C-----------------CCCeeE---------EEEEEecCC----CHHHHHHHH
Q psy16850        119 TSCYVANDSTLFTLGKM--------I-----------------PYFTEL---------IYFYRFLAN----TTDIIKEAS  160 (174)
Q Consensus       119 ~sGy~aN~~~i~aL~~~--------~-----------------~g~~~s---------~~~~~f~HN----d~~~Le~~L  160 (174)
                      ++|.+||+..+.+....        .                 ...|.|         +.++.++++    |+++||+.|
T Consensus       146 ~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i  225 (475)
T 3k40_A          146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHRMRGAALEKAI  225 (475)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTBCCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECCCCCcCHHHHHHHH
Confidence            99999999888765210        0                 111221         367778884    999999999


Q ss_pred             HHhc
Q psy16850        161 KELQ  164 (174)
Q Consensus       161 ~~~~  164 (174)
                      ++..
T Consensus       226 ~~~~  229 (475)
T 3k40_A          226 EQDV  229 (475)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=96.22  E-value=0.0024  Score=52.47  Aligned_cols=58  Identities=21%  Similarity=0.313  Sum_probs=46.0

Q ss_pred             CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      +|++++++.+.+     +    ....|..+.+.+||+.||+++|.+.++++++|..||..++.++..
T Consensus        28 ~p~v~~ai~~~~-----~----~~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~   85 (359)
T 3pj0_A           28 LTEALQNIDDNL-----E----SDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWAD   85 (359)
T ss_dssp             HHHHTTTSCTTC-----B----CCBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhc-----c----cCcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHh
Confidence            566776665521     1    234566788999999999999999999999999999999988764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=96.18  E-value=0.017  Score=49.12  Aligned_cols=64  Identities=19%  Similarity=0.150  Sum_probs=50.4

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+.+++||+.||+++|.+.++++++|..||..++.++.+  +|.+..                     +.++.++. |++
T Consensus        55 ~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~  131 (412)
T 2cb1_A           55 DPTAKALEERLKALEGALEAVVLASGQAATFAALLALLR--PGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPE  131 (412)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC--TTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS-SHH
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-CHH
Confidence            478999999999999999999999999999999998865  343322                     24555655 488


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      +||+.++.
T Consensus       132 ~l~~~i~~  139 (412)
T 2cb1_A          132 AVREALSA  139 (412)
T ss_dssp             HHHHHCCT
T ss_pred             HHHHHhcc
Confidence            88887754

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=96.09  E-value=0.0059  Score=54.40  Aligned_cols=102  Identities=10%  Similarity=-0.107  Sum_probs=60.6

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-------CcEEEecchhHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-------EAGLVFTSCYVAN  125 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-------e~al~f~sGy~aN  125 (174)
                      .+|||++++|..  .+|++++++.+++...+.+  .  ...|...+.+++.+.+++.++.       +..+++++|..|+
T Consensus       104 ~~i~l~~g~~~~--~~~~~v~a~~~~~~~~~y~--~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al  177 (533)
T 3f6t_A          104 DAVNYCHTELGL--NRDKVVAEWVNGAVANNYP--V--PDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI  177 (533)
T ss_dssp             HHHHHHHHTTCC--CHHHHHHHHHHHHHTCSCC--S--SSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred             hheeccCCCCCc--CCcHHHHHHHHHHHhCCCC--C--CcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence            478999887766  3789999988888642211  0  1124344444444444433243       4566666667777


Q ss_pred             HHHHHH-----hcccCCCCeeE-----------------EEEEEecCC---------CHHHHHHHHHH
Q psy16850        126 DSTLFT-----LGKMIPYFTEL-----------------IYFYRFLAN---------TTDIIKEASKE  162 (174)
Q Consensus       126 ~~~i~a-----L~~~~~g~~~s-----------------~~~~~f~HN---------d~~~Le~~L~~  162 (174)
                      ..++.+     +.+  +|.++.                 +.++.++++         |+++|++.+..
T Consensus       178 ~~~~~~l~~~~l~~--~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~  243 (533)
T 3f6t_A          178 VYAFHSLAENHLLK--KGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP  243 (533)
T ss_dssp             HHHHHHHHHTTSSC--TTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT
T ss_pred             HHHHHHhhhhhccC--CcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC
Confidence            777776     444  444332                 245556554         78888887753

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=96.09  E-value=0.01  Score=50.07  Aligned_cols=62  Identities=23%  Similarity=0.229  Sum_probs=49.4

Q ss_pred             cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC---CcEEEecchhHHHHHHHHHh
Q psy16850         61 DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK---EAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        61 dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~---e~al~f~sGy~aN~~~i~aL  132 (174)
                      ||.++..++.+-+++.+++..|+          +...+++++++.+++++|.   +.++++++|..|+..++.++
T Consensus        32 ~~~~~~~~~~~~~~v~~a~~~~~----------~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~   96 (374)
T 2aeu_A           32 DLSGLSGGFLIDEKDKALLNTYI----------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL   96 (374)
T ss_dssp             ECSSCCCCCCCCHHHHHHHTSTT----------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred             eecccCCCCCCCHHHHHHHHHhc----------CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC
Confidence            67777777777788888776332          1234568889999999999   88999999999999999988

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=96.08  E-value=0.024  Score=50.38  Aligned_cols=81  Identities=16%  Similarity=0.045  Sum_probs=61.6

Q ss_pred             eecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC--CCcEEEecch
Q psy16850         47 YTDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ--KEAGLVFTSC  121 (174)
Q Consensus        47 ~~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g--~e~al~f~sG  121 (174)
                      +..+|+++|+|.|.   .-||-+ ||+|.+|+.+.+++....+   ......++...+|-++|++...  .+.+.+.+||
T Consensus        62 ~D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~l~~~~---~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sG  137 (473)
T 4e3q_A           62 VDVNGRRYLDANSGLWNMVAGFD-HKGLIDAAKAQYERFPGYH---AFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSG  137 (473)
T ss_dssp             EETTCCEEEETTTTTTTCTTCSC-CHHHHHHHHHHHHHCCCCC---CCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSH
T ss_pred             EeCCCCEEEEcccCHHHhhccCC-CHHHHHHHHHHHHhccccc---ccccccCHHHHHHHHHHHhhCCCCccEEEEeCch
Confidence            34789999999775   334543 8999999999998865221   1222245778889999999985  5688999999


Q ss_pred             hHHHHHHHHH
Q psy16850        122 YVANDSTLFT  131 (174)
Q Consensus       122 y~aN~~~i~a  131 (174)
                      -.||-..|..
T Consensus       138 sEA~e~AiKl  147 (473)
T 4e3q_A          138 SEANDTMVKM  147 (473)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=96.02  E-value=0.028  Score=46.40  Aligned_cols=65  Identities=11%  Similarity=0.068  Sum_probs=47.7

Q ss_pred             chHHHHHHHHHHHHhCCC--cEEEecchhHHHHHHHHHhcccCCCCeeE-------------------EEEEEecC----
Q psy16850         96 SLFHEKLEEDVARLHQKE--AGLVFTSCYVANDSTLFTLGKMIPYFTEL-------------------IYFYRFLA----  150 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~i~aL~~~~~g~~~s-------------------~~~~~f~H----  150 (174)
                      ...+.++++.+|+++|.+  ..++.++|..|+..++.++.+  +|.+..                   +.++.++.    
T Consensus        41 ~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  118 (392)
T 2z9v_A           41 QLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLIS--PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNE  118 (392)
T ss_dssp             HHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCC--TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcC--CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCC
Confidence            456899999999999975  566668889999999999864  333221                   13344443    


Q ss_pred             -CCHHHHHHHHHH
Q psy16850        151 -NTTDIIKEASKE  162 (174)
Q Consensus       151 -Nd~~~Le~~L~~  162 (174)
                       .|+++|++.+++
T Consensus       119 ~~d~~~l~~~l~~  131 (392)
T 2z9v_A          119 AIDPQAVADMLKA  131 (392)
T ss_dssp             CCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhc
Confidence             589999999975

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=96.02  E-value=0.0096  Score=50.27  Aligned_cols=80  Identities=14%  Similarity=0.109  Sum_probs=53.8

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHc-CCCccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKF-GTGAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVAND  126 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~-G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~  126 (174)
                      ++..++|++++.    ..+|++++++.+.++.. +-..+....-.+......+|++.||+++|.+  ..++.++|..|+.
T Consensus        17 ~~~~~Ld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~   92 (432)
T 3a9z_A           17 NRKVYMDYNATT----PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNN   92 (432)
T ss_dssp             -CCEECBTTTCC----CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHH
T ss_pred             CCcEEeeCCccC----CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHH
Confidence            345566777665    45899999999988762 2111111111123467789999999999975  4566666699999


Q ss_pred             HHHHHhc
Q psy16850        127 STLFTLG  133 (174)
Q Consensus       127 ~~i~aL~  133 (174)
                      .++.++.
T Consensus        93 ~~~~~~~   99 (432)
T 3a9z_A           93 LVIHSTV   99 (432)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998885

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=95.97  E-value=0.011  Score=52.28  Aligned_cols=66  Identities=9%  Similarity=0.024  Sum_probs=45.9

Q ss_pred             CCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-------cEEEecchhHHHHHHHHHhc
Q psy16850         65 MSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-------AGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        65 L~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-------~al~f~sGy~aN~~~i~aL~  133 (174)
                      -..+|.+.+++.+++...+.+...++.   ...+.+++.+.||+++|.+       .++++++|..||..++.++.
T Consensus        66 ~~~~~~v~~~l~~~~~~~~~~~~~~p~---~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~  138 (502)
T 3hbx_A           66 TWMEPECDKLIMSSINKNYVDMDEYPV---TTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK  138 (502)
T ss_dssp             CCCCHHHHHHHHHTTTCBTTCTTTCHH---HHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccCCCChhcChh---HHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH
Confidence            334788888888877664443332222   2355666667789999988       56779999999998877664

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=95.66  E-value=0.017  Score=54.09  Aligned_cols=43  Identities=14%  Similarity=-0.005  Sum_probs=38.9

Q ss_pred             ccCCchHHHHHHHHHHHHhCCCcEEEecchh-HHHHHHHHHhcc
Q psy16850         92 ISGNSLFHEKLEEDVARLHQKEAGLVFTSCY-VANDSTLFTLGK  134 (174)
Q Consensus        92 ~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy-~aN~~~i~aL~~  134 (174)
                      +.+....+.++|+.+|+++|.+.++++++|. .+|.+++.++++
T Consensus       168 l~~~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~  211 (730)
T 1c4k_A          168 LLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVS  211 (730)
T ss_dssp             TTTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCC
T ss_pred             ccCChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcC
Confidence            4566789999999999999999999999997 899999999986

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=95.64  E-value=0.091  Score=43.49  Aligned_cols=68  Identities=15%  Similarity=0.117  Sum_probs=50.1

Q ss_pred             chHHHHHHHHHHHHhCCCcE---EEecchhHHHHHHHHHhcccCCCCeeE-------------------EEEEEecCC--
Q psy16850         96 SLFHEKLEEDVARLHQKEAG---LVFTSCYVANDSTLFTLGKMIPYFTEL-------------------IYFYRFLAN--  151 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~a---l~f~sGy~aN~~~i~aL~~~~~g~~~s-------------------~~~~~f~HN--  151 (174)
                      ...+.++++.+|+++|.+..   ++.+||..|+..++.++.+  +|.+..                   +.++.++.+  
T Consensus        45 ~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~  122 (411)
T 3nnk_A           45 THYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIR--PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWG  122 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCC--TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcC--CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCC
Confidence            36789999999999998753   4445789999999999865  444332                   245566666  


Q ss_pred             ---CHHHHHHHHHHhcc
Q psy16850        152 ---TTDIIKEASKELQE  165 (174)
Q Consensus       152 ---d~~~Le~~L~~~~~  165 (174)
                         |+++||+.+++...
T Consensus       123 ~~~d~~~l~~~i~~~~~  139 (411)
T 3nnk_A          123 EVFTPDQVEDAVKRIRP  139 (411)
T ss_dssp             CCCCHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHhhCCC
Confidence               99999999986433

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=95.64  E-value=0.0088  Score=48.93  Aligned_cols=73  Identities=12%  Similarity=0.048  Sum_probs=48.5

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecch-hHHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSC-YVAND  126 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sG-y~aN~  126 (174)
                      .++|+|++|.+ .+..+|++++++.+++.+.+..      .++.. .+.+|++.||+|++    .++.+++++| -.++.
T Consensus        19 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~-~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~   90 (335)
T 1uu1_A           19 RDKTYLALNEN-PFPFPEDLVDEVFRRLNSDALR------IYYDS-PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIY   90 (335)
T ss_dssp             CCSEEESSCCC-SSCCCHHHHHHHHHTCCGGGGG------SCCCS-SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHH
T ss_pred             CcceECCCCCC-CCCCCHHHHHHHHHHhhhhhhh------cCCCC-chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHH
Confidence            35899999987 4557899999988876432211      11222 37899999999999    3345555555 55555


Q ss_pred             HHHHHh
Q psy16850        127 STLFTL  132 (174)
Q Consensus       127 ~~i~aL  132 (174)
                      .++.++
T Consensus        91 ~~~~~~   96 (335)
T 1uu1_A           91 VMMLMF   96 (335)
T ss_dssp             HHHHHS
T ss_pred             HHHHHh
Confidence            566665

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=95.61  E-value=0.026  Score=49.97  Aligned_cols=103  Identities=6%  Similarity=-0.071  Sum_probs=62.2

Q ss_pred             EEeccCcccCCCCCccc-----hHHHHHHHHHcCCCccccccccCCchHHHHHHHHH----HHHhCCC----cEEEecch
Q psy16850         55 TVYCSNDYLGMSCHPKV-----KSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDV----ARLHQKE----AGLVFTSC  121 (174)
Q Consensus        55 inf~SndYLGL~~~p~v-----~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~l----A~~~g~e----~al~f~sG  121 (174)
                      +++.+-.|+|.-..+--     .+.+..++.....+-       ...+...+||+.+    ++++|.+    .++++++|
T Consensus        91 ~~~~~p~f~~~~~~~~~~~~~~~e~l~~~~~~~~~~~-------~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~gg  163 (511)
T 3vp6_A           91 VRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTY-------EIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGG  163 (511)
T ss_dssp             CCTTSTTEESSSSCCCCHHHHHHHHHHHHHCCCSSCT-------TTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSH
T ss_pred             CCCCCCCceEeecCCCcHHHHHHHHHHHHhccCCCCc-------ccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCch
Confidence            55677778886543322     223333333322221       2235566666655    5667776    56888899


Q ss_pred             hHHHHHHHHHhccc------------CCCCee--------E---------E---EEEEecCC-----CHHHHHHHHHHhc
Q psy16850        122 YVANDSTLFTLGKM------------IPYFTE--------L---------I---YFYRFLAN-----TTDIIKEASKELQ  164 (174)
Q Consensus       122 y~aN~~~i~aL~~~------------~~g~~~--------s---------~---~~~~f~HN-----d~~~Le~~L~~~~  164 (174)
                      ..||+..+.++...            .|+..+        +         +   .++.++++     |+++||+.|++..
T Consensus       164 t~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~  243 (511)
T 3vp6_A          164 AISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAK  243 (511)
T ss_dssp             HHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHH
Confidence            99999888776531            123222        1         2   56777877     9999999998763

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=95.52  E-value=0.03  Score=48.09  Aligned_cols=82  Identities=15%  Similarity=0.144  Sum_probs=54.0

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcccccc--ccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRN--ISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVANDS  127 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~--~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~~  127 (174)
                      ++.++.|.+| .+|.. .+.+.+++.+.++.|+.....+..  ..+...+++++++.||+++|.+ +-++|++|...|+.
T Consensus        65 ~~~~iyld~~-~~g~~-p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~  142 (465)
T 3e9k_A           65 DENAIYFLGN-SLGLQ-PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLH  142 (465)
T ss_dssp             TCBCEECBTT-TSCCE-ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHH
T ss_pred             CCCeEEecCC-ccCCC-hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHH
Confidence            3578888877 55643 566778888888777632221111  1245577899999999999975 35666666666665


Q ss_pred             -HHHHhcc
Q psy16850        128 -TLFTLGK  134 (174)
Q Consensus       128 -~i~aL~~  134 (174)
                       ++.++..
T Consensus       143 ~~~~~~~~  150 (465)
T 3e9k_A          143 LLMLSFFK  150 (465)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcc
Confidence             5666643

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=95.45  E-value=0.08  Score=49.52  Aligned_cols=71  Identities=8%  Similarity=-0.008  Sum_probs=53.9

Q ss_pred             cccCCchHHHHHHHHHHHHhCCCcEEEecchh-HHHHHHHHHhcccCCCCeeE-----------------EEEEEecC--
Q psy16850         91 NISGNSLFHEKLEEDVARLHQKEAGLVFTSCY-VANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA--  150 (174)
Q Consensus        91 ~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy-~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H--  150 (174)
                      .+..+...+.++|+.+|+++|.+.++++++|. .+|.+++.++++  +|+++.                 +.++.++.  
T Consensus       199 ~L~~~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~--~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~  276 (755)
T 2vyc_A          199 SLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT--DNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR  276 (755)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHHCCEEEEECCCB
T ss_pred             ccccCccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHHHHcCCEEEEEeCCC
Confidence            34455678899999999999999999999994 789999999986  454432                 23333322  


Q ss_pred             C-------------CHHHHHHHHHHh
Q psy16850        151 N-------------TTDIIKEASKEL  163 (174)
Q Consensus       151 N-------------d~~~Le~~L~~~  163 (174)
                      |             |+++||+.|++.
T Consensus       277 ~~~g~~g~i~~~~~d~e~le~~i~~~  302 (755)
T 2vyc_A          277 NRYGIIGPIYPQEMQPETLQKKISES  302 (755)
T ss_dssp             CTTSCBCCCCGGGGSHHHHHHHHHHC
T ss_pred             CccccccccCcCCCCHHHHHHHHHhC
Confidence            2             899999999874

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=95.31  E-value=0.048  Score=47.86  Aligned_cols=101  Identities=20%  Similarity=0.092  Sum_probs=66.4

Q ss_pred             eEEEeccC-cccCCCCCccchHHHHHHH---HHcC-CCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHH
Q psy16850         53 EVTVYCSN-DYLGMSCHPKVKSAVREAL---EKFG-TGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDS  127 (174)
Q Consensus        53 ~~inf~Sn-dYLGL~~~p~v~~a~~~al---~~~G-~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~  127 (174)
                      .+|+|... |. .+...|.|.++.....   ...| .+.  +|  .|+ +..+++++.+|+++|.+.++++++|..|+..
T Consensus        90 ~~i~l~~g~~~-~~~~~~~i~~a~~~~~~~~~~~~~~~Y--~~--~g~-~~~~~l~~~la~~~g~~~~i~~~sGt~al~~  163 (464)
T 1ibj_A           90 LLVNLDNKFDP-FDAMSTPLYQTATFKQPSAIENGPYDY--TR--SGN-PTRDALESLLAKLDKADRAFCFTSGMAALSA  163 (464)
T ss_dssp             HHTCCCCSSCT-TCCSSCCCCCCSBCCCSSSSCCCSCSB--TT--TCC-HHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred             eEEECCCCCCC-CCCCCccHHhhhhhhhhcccccCCccc--cC--CCC-HHHHHHHHHHHHHhCCCeEEEECCHHHHHHH
Confidence            46666553 42 3455667777665321   1111 111  12  244 4899999999999999999999999998877


Q ss_pred             HHHHhcccCCCCeeE---------------------EEEEEecCCCHHHHHHHHHH
Q psy16850        128 TLFTLGKMIPYFTEL---------------------IYFYRFLANTTDIIKEASKE  162 (174)
Q Consensus       128 ~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~Le~~L~~  162 (174)
                      ++. +++  +|.++.                     +.++.++.+|+++||+.+..
T Consensus       164 ~l~-~~~--~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~  216 (464)
T 1ibj_A          164 VTH-LIK--NGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGP  216 (464)
T ss_dssp             HHT-TSC--TTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCS
T ss_pred             HHH-HhC--CCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhcc
Confidence            765 443  333221                     46778888999999988853

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=95.26  E-value=0.022  Score=46.55  Aligned_cols=78  Identities=12%  Similarity=0.043  Sum_probs=52.0

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCcccccc-----ccCCchHHHHHHHHHHHHhCCC--cEEEecch--hH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRN-----ISGNSLFHEKLEEDVARLHQKE--AGLVFTSC--YV  123 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~-----~~G~~~~~~~LE~~lA~~~g~e--~al~f~sG--y~  123 (174)
                      ++++|..+.+   ...|.+++++.++++.+ .+.+.+..     ..|....++++++.+|+++|.+  +.++|++|  ..
T Consensus         3 ~~~~~~~g~~---~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~   78 (360)
T 1w23_A            3 QVFNFNAGPS---ALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASL   78 (360)
T ss_dssp             CCEECCSSSC---CCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred             ceEeecCCCc---CCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchH
Confidence            3566666554   45788999998888665 22211111     2344557899999999999986  36666654  57


Q ss_pred             HHHHHHHHhcc
Q psy16850        124 ANDSTLFTLGK  134 (174)
Q Consensus       124 aN~~~i~aL~~  134 (174)
                      |+..++.+|..
T Consensus        79 al~~~~~~l~~   89 (360)
T 1w23_A           79 QFTMLPMNLLT   89 (360)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            78887777764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=95.12  E-value=0.12  Score=42.27  Aligned_cols=67  Identities=18%  Similarity=0.160  Sum_probs=49.2

Q ss_pred             chHHHHHHHHHHHHhCCC---cEEEecchhHHHHHHHHHhcccCCCCeeE-------------------EEEEEec----
Q psy16850         96 SLFHEKLEEDVARLHQKE---AGLVFTSCYVANDSTLFTLGKMIPYFTEL-------------------IYFYRFL----  149 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e---~al~f~sGy~aN~~~i~aL~~~~~g~~~s-------------------~~~~~f~----  149 (174)
                      .....++++.||+++|.+   ..++.++|..|+..++.++..  +|.+..                   +.++.++    
T Consensus        55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  132 (393)
T 3kgw_A           55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLE--PGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG  132 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCC--CCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC
Confidence            467889999999999976   356679999999999999865  443322                   1333333    


Q ss_pred             -CCCHHHHHHHHHHhc
Q psy16850        150 -ANTTDIIKEASKELQ  164 (174)
Q Consensus       150 -HNd~~~Le~~L~~~~  164 (174)
                       +.|+++||+.+++..
T Consensus       133 ~~~d~~~l~~~i~~~~  148 (393)
T 3kgw_A          133 EHYTLQEVEEGLAQHK  148 (393)
T ss_dssp             CCCCHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHhhCC
Confidence             568999999998743

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=95.03  E-value=0.094  Score=45.76  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=64.4

Q ss_pred             EEEeccCcccCCCCCccchH-----HHHHHHHHcCCCccccccccCCchHHHHHHHHH----HHHhCCC-----------
Q psy16850         54 VTVYCSNDYLGMSCHPKVKS-----AVREALEKFGTGAGGTRNISGNSLFHEKLEEDV----ARLHQKE-----------  113 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~-----a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~l----A~~~g~e-----------  113 (174)
                      +..|.+..|+|+-..|....     .+..++...+.       .....+...+||+++    ++.+|.+           
T Consensus        73 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-------~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~  145 (481)
T 4e1o_A           73 VVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGF-------TWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQ  145 (481)
T ss_dssp             CCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCS-------STTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCB
T ss_pred             CCCCCCCCeeEeCCCCCCHHHHHHHHHHHHhCcccC-------CcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCC
Confidence            55788999999876543222     22223322121       122345666777765    5567766           


Q ss_pred             -cEEEecchhHHHHHHHHHhccc-----------------CCCCee--------E---------EEEEEecCC-----CH
Q psy16850        114 -AGLVFTSCYVANDSTLFTLGKM-----------------IPYFTE--------L---------IYFYRFLAN-----TT  153 (174)
Q Consensus       114 -~al~f~sGy~aN~~~i~aL~~~-----------------~~g~~~--------s---------~~~~~f~HN-----d~  153 (174)
                       ..++.++|.+||+..+.+....                 .++...        |         +.++.++++     |+
T Consensus       146 ~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~  225 (481)
T 4e1o_A          146 GGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRG  225 (481)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCH
T ss_pred             CceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCH
Confidence             4588899999999888765321                 022222        1         367778876     99


Q ss_pred             HHHHHHHHHhc
Q psy16850        154 DIIKEASKELQ  164 (174)
Q Consensus       154 ~~Le~~L~~~~  164 (174)
                      ++||+.|++..
T Consensus       226 ~~Le~~i~~~~  236 (481)
T 4e1o_A          226 EALQKAIEEDK  236 (481)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=94.96  E-value=0.045  Score=47.42  Aligned_cols=79  Identities=10%  Similarity=0.013  Sum_probs=56.8

Q ss_pred             EEeccCcccCCC--CCccchHHHHHHHHHcCCCcc-ccccccCCchHHHHHHHHHHHHhCCC----cEEEecchhHHHHH
Q psy16850         55 TVYCSNDYLGMS--CHPKVKSAVREALEKFGTGAG-GTRNISGNSLFHEKLEEDVARLHQKE----AGLVFTSCYVANDS  127 (174)
Q Consensus        55 inf~SndYLGL~--~~p~v~~a~~~al~~~G~gs~-~Sr~~~G~~~~~~~LE~~lA~~~g~e----~al~f~sGy~aN~~  127 (174)
                      +.+.+..|+|..  ..|.+.+++.+++..+..... ......|...+.+++.+.+|+++|.+    .+++.++|..||..
T Consensus        62 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~  141 (497)
T 3mc6_A           62 TQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLL  141 (497)
T ss_dssp             CCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHH
T ss_pred             CCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHH
Confidence            456677888863  457889999999888653222 11222344566777778889999987    57888899999999


Q ss_pred             HHHHhc
Q psy16850        128 TLFTLG  133 (174)
Q Consensus       128 ~i~aL~  133 (174)
                      ++.++.
T Consensus       142 a~~a~~  147 (497)
T 3mc6_A          142 ACLSAK  147 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=94.85  E-value=0.02  Score=48.49  Aligned_cols=79  Identities=9%  Similarity=-0.021  Sum_probs=54.7

Q ss_pred             eEE-EeccCcccCCCCCccchHHHHHHHHHcCCC-------cc--ccccccCCchHHHHHHHHHHHHh--------CCCc
Q psy16850         53 EVT-VYCSNDYLGMSCHPKVKSAVREALEKFGTG-------AG--GTRNISGNSLFHEKLEEDVARLH--------QKEA  114 (174)
Q Consensus        53 ~~i-nf~SndYLGL~~~p~v~~a~~~al~~~G~g-------s~--~Sr~~~G~~~~~~~LE~~lA~~~--------g~e~  114 (174)
                      .+| +|+..+.-.   .|.+.+++.+++.+....       ..  ...+-++...-+.+|+++||+|+        ..+.
T Consensus        32 ~~i~~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~  108 (444)
T 3if2_A           32 QPVNMLGGGNPAK---IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSEN  108 (444)
T ss_dssp             SCCEECSCCCCCC---CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred             hhhhccCCCCCCc---ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHH
Confidence            467 787775433   467778888777664322       21  11233344444789999999998        4577


Q ss_pred             EEEecchhHHHHHHHHHhcc
Q psy16850        115 GLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus       115 al~f~sGy~aN~~~i~aL~~  134 (174)
                      .+++++|..|+..++.++.+
T Consensus       109 i~~t~G~t~al~~~~~~l~~  128 (444)
T 3if2_A          109 IALTNGSQNAFFYLFNLFGG  128 (444)
T ss_dssp             EEEESSHHHHHHHHHHHSSE
T ss_pred             EEEecCcHHHHHHHHHHHhC
Confidence            89999999999999988864

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=94.83  E-value=0.073  Score=46.24  Aligned_cols=93  Identities=10%  Similarity=0.008  Sum_probs=59.1

Q ss_pred             CccchHHHHHHHHHcCCCccccc-cccCCchHHHHHHHHHHHHhCCCcEEEe-cchhHHHHHHHHHhccc--CCCC----
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTR-NISGNSLFHEKLEEDVARLHQKEAGLVF-TSCYVANDSTLFTLGKM--IPYF----  139 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr-~~~G~~~~~~~LE~~lA~~~g~e~al~f-~sGy~aN~~~i~aL~~~--~~g~----  139 (174)
                      +|++.+++.+.+..|  ...... ...|...+..++++.+|+++|.+.++++ ++|..+|...+.++...  -+|.    
T Consensus        79 ~p~v~~~~~~~~~~~--~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r  156 (474)
T 1wyu_B           79 NPKLHEEAARLFADL--HPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTR  156 (474)
T ss_dssp             CCHHHHHHHHTTSSC--CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             CHHHHHHHHHHHHhc--CCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCC
Confidence            577766665531111  111111 3456678899999999999999988766 88889998755554210  0222    


Q ss_pred             -eeE-----------------EEEEEecCC-----CHHHHHHHHHH
Q psy16850        140 -TEL-----------------IYFYRFLAN-----TTDIIKEASKE  162 (174)
Q Consensus       140 -~~s-----------------~~~~~f~HN-----d~~~Le~~L~~  162 (174)
                       ++.                 +.++.++.+     |+++||+.+..
T Consensus       157 ~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~  202 (474)
T 1wyu_B          157 RVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGP  202 (474)
T ss_dssp             CEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCST
T ss_pred             CEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCC
Confidence             221                 366777776     89999998854

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=94.73  E-value=0.033  Score=47.85  Aligned_cols=69  Identities=12%  Similarity=-0.040  Sum_probs=50.2

Q ss_pred             ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc-------EEEecchhHHHHHHHHHhc
Q psy16850         62 YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA-------GLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        62 YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~-------al~f~sGy~aN~~~i~aL~  133 (174)
                      |++...+|.+.+++.+++...+.+...++   |...+.+++.+.+|+++|.+.       ++++++|..||..++.++.
T Consensus        49 f~~~~~~~~v~e~~~~a~~~~~~~~~~~~---~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~  124 (452)
T 2dgk_A           49 FCQTWDDENVHKLMDLSINKNWIDKEEYP---QSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK  124 (452)
T ss_dssp             CSCCCCCHHHHHHHHHTTTCBTTCTTTCH---HHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH
T ss_pred             eeCCCchHHHHHHHHHHhccCCCChhhCh---hHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH
Confidence            44434568888888888766544433333   445667777788899999874       7899999999999887764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=94.49  E-value=0.23  Score=40.86  Aligned_cols=96  Identities=15%  Similarity=0.015  Sum_probs=63.1

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc--EE-EecchhHHHHHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA--GL-VFTSCYVANDSTLF  130 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al-~f~sGy~aN~~~i~  130 (174)
                      .+++..+.   +..+|++++++.+++..    . .++   .......++++.+|+++|.+.  .+ +.++|..|+..++.
T Consensus        20 ~~~~~~g~---~~~~~~v~~a~~~~~~~----~-~~~---~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~   88 (393)
T 2huf_A           20 KLLMGPGP---SNAPQRVLDAMSRPILG----H-LHP---ETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLC   88 (393)
T ss_dssp             CEECSSSC---CCCCHHHHHHTTSCCCC----T-TSH---HHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHH
T ss_pred             eEEecCCC---CCCCHHHHHHHHhhhcc----C-CCH---HHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHH
Confidence            34554442   44577777776654421    0 011   124678999999999999864  34 55889999999999


Q ss_pred             HhcccCCCCeeE-------------------EEEEEec-----CCCHHHHHHHHHH
Q psy16850        131 TLGKMIPYFTEL-------------------IYFYRFL-----ANTTDIIKEASKE  162 (174)
Q Consensus       131 aL~~~~~g~~~s-------------------~~~~~f~-----HNd~~~Le~~L~~  162 (174)
                      ++..  +|.+..                   +.++.++     +.|+++|++.+++
T Consensus        89 ~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  142 (393)
T 2huf_A           89 NLLE--DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI  142 (393)
T ss_dssp             HHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             HHhC--CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc
Confidence            9864  333221                   2444454     5799999999976

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=94.33  E-value=0.048  Score=45.59  Aligned_cols=37  Identities=14%  Similarity=0.103  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEe-cchhHHHHHHHHHhc
Q psy16850         97 LFHEKLEEDVARLHQKEAGLVF-TSCYVANDSTLFTLG  133 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~al~f-~sGy~aN~~~i~aL~  133 (174)
                      .+.+++++.+++++|.+..++| +||..||.+++..+.
T Consensus        35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~~   72 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQLT   72 (379)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhCC
Confidence            5788999999999998877777 588999888886653

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=94.21  E-value=0.029  Score=45.45  Aligned_cols=65  Identities=15%  Similarity=0.037  Sum_probs=45.6

Q ss_pred             CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHHHHHHHhcccCCCCee
Q psy16850         67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~i~aL~~~~~g~~~  141 (174)
                      -+|++++++.+++..        ..-.+....+.+|++.||+++|.+  ..++.++|..|+..++.++.+  +|.+.
T Consensus        12 ~~~~v~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~--~gd~v   78 (352)
T 1iug_A           12 LHPKALEALARPQLH--------HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--PGERV   78 (352)
T ss_dssp             CCHHHHHHHHSCCCC--------TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--TTCEE
T ss_pred             CCHHHHHHhccCCCC--------ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccC--CCCeE
Confidence            367777776665431        011122356899999999999986  567777999999999999865  56543

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=94.17  E-value=0.02  Score=49.27  Aligned_cols=80  Identities=10%  Similarity=-0.117  Sum_probs=51.0

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccc-cCCchHHHHHHHHHHHHhC--------CCcEEEecch
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNI-SGNSLFHEKLEEDVARLHQ--------KEAGLVFTSC  121 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~-~G~~~~~~~LE~~lA~~~g--------~e~al~f~sG  121 (174)
                      ...+|+|+.++- .+...+.+++++.+++...|....+-... .| ..++.+|++.||+|++        .+..++++++
T Consensus        55 ~~~~i~l~~g~~-~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~  132 (427)
T 2hox_A           55 QGCSADVASGDG-LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGVGV  132 (427)
T ss_dssp             TTCCEECCSCCC-GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHH
T ss_pred             CCceEEecCcCC-CCCCCHHHHHhHHhhhhcCCcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCH
Confidence            345788877765 24445677777777664444321000011 13 3447899999999996        2456777777


Q ss_pred             hHHHHHHHHHh
Q psy16850        122 YVANDSTLFTL  132 (174)
Q Consensus       122 y~aN~~~i~aL  132 (174)
                      ..++..++.+|
T Consensus       133 ~~al~~~~~~l  143 (427)
T 2hox_A          133 TQLIHGLVISL  143 (427)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88998999998

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=93.88  E-value=0.27  Score=40.08  Aligned_cols=64  Identities=9%  Similarity=0.011  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHhCC------CcEEEecchhHHHHHHHHHhc---ccCCCCeeE-------------------EEEEEe
Q psy16850         97 LFHEKLEEDVARLHQK------EAGLVFTSCYVANDSTLFTLG---KMIPYFTEL-------------------IYFYRF  148 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~------e~al~f~sGy~aN~~~i~aL~---~~~~g~~~s-------------------~~~~~f  148 (174)
                      ..+.+++++++++++.      +..++.++|..|+..++.++.   +  +|.+..                   +.++.+
T Consensus        38 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~--~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v  115 (385)
T 2bkw_A           38 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKA--PNKNVLVVSTGTFSDRFADCLRSYGAQVDVV  115 (385)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTC--SCCEEEEECSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCC--CCCeEEEEcCCcchHHHHHHHHHcCCceEEE
Confidence            3577899999999987      356677788999999999986   4  443321                   255666


Q ss_pred             cC------CCHHHHHHHHHH
Q psy16850        149 LA------NTTDIIKEASKE  162 (174)
Q Consensus       149 ~H------Nd~~~Le~~L~~  162 (174)
                      +.      .|+++||+.|++
T Consensus       116 ~~~~~~~~~d~~~l~~~l~~  135 (385)
T 2bkw_A          116 RPLKIGESVPLELITEKLSQ  135 (385)
T ss_dssp             CCSSTTSCCCHHHHHHHHHH
T ss_pred             ecCCCCCCCCHHHHHHHHhc
Confidence            66      489999999876

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=93.40  E-value=0.055  Score=48.68  Aligned_cols=104  Identities=14%  Similarity=0.108  Sum_probs=62.0

Q ss_pred             ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHHH----HHHHhCCCcE-----EEecchhHHHHH
Q psy16850         58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEED----VARLHQKEAG-----LVFTSCYVANDS  127 (174)
Q Consensus        58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~~----lA~~~g~e~a-----l~f~sGy~aN~~  127 (174)
                      +|-||.    +|.|.++.-..+ .+|--|.-|-|-..| .....++|..    ..+.||.+.|     +=--||-.||++
T Consensus        61 ASEN~~----S~aV~~a~gS~ltnKYaEGyPg~RyYgG-ce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~a  135 (490)
T 3ou5_A           61 ASENFC----SRAALEALGSCLNNKYSEGYPGKRYYGG-AEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLA  135 (490)
T ss_dssp             TTCCCC----CHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHH
T ss_pred             cCCCcC----CHHHHHHhcCcccccccCCCCCccccCC-ChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHH
Confidence            355553    344555544333 467778888888666 5567777754    5688998876     666799999999


Q ss_pred             HHHHhcccCCCCee-----------E-------------E---EEEEecC------CCHHHHHHHHHHhccccc
Q psy16850        128 TLFTLGKMIPYFTE-----------L-------------I---YFYRFLA------NTTDIIKEASKELQEDMI  168 (174)
Q Consensus       128 ~i~aL~~~~~g~~~-----------s-------------~---~~~~f~H------Nd~~~Le~~L~~~~~~~~  168 (174)
                      ++.+|.+  ||+++           +             .   .++.|.-      =|+|.||++.++..|..|
T Consensus       136 vy~All~--PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklI  207 (490)
T 3ou5_A          136 VYTALLQ--PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLI  207 (490)
T ss_dssp             HHHHHCC---CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEE
T ss_pred             HHHHHcC--CCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeE
Confidence            9999987  44322           1             0   1233332      299999999999998766

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=93.19  E-value=0.39  Score=39.52  Aligned_cols=92  Identities=8%  Similarity=-0.039  Sum_probs=56.2

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecch-hHHHHHHH
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSC-YVANDSTL  129 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sG-y~aN~~~i  129 (174)
                      +.+|+|++|. --+...|.+      ++.  +      ...++... +.+|++.||+++|.+ +.+++++| -.++..++
T Consensus        29 ~~~i~l~~~~-~~~~~~~~v------a~~--~------~~~Y~~~~-~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~   92 (356)
T 1fg7_A           29 NGDVWLNANE-YPTAVEFQL------TQQ--T------LNRYPECQ-PKAVIENYAQYAGVKPEQVLVSRGADEGIELLI   92 (356)
T ss_dssp             TCSEECSSCC-CSSCCCCCC------CCC--C------TTSCCCSS-CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred             CceEEeeCCC-CCCCCCHhH------hhh--h------hccCCCcc-HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHH
Confidence            4579999986 234445766      111  1      11122223 689999999999975 34555555 66777888


Q ss_pred             HHhcccCCC-CeeE-----------------EEEEEecC-----CCHHHHHHHHH
Q psy16850        130 FTLGKMIPY-FTEL-----------------IYFYRFLA-----NTTDIIKEASK  161 (174)
Q Consensus       130 ~aL~~~~~g-~~~s-----------------~~~~~f~H-----Nd~~~Le~~L~  161 (174)
                      .++.+  +| .+..                 +.++.++.     .|+++|++.+.
T Consensus        93 ~~~~~--~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~  145 (356)
T 1fg7_A           93 RAFCE--PGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD  145 (356)
T ss_dssp             HHHCC--TTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT
T ss_pred             HHHhC--CCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc
Confidence            88864  55 4432                 24555554     46777776664

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=92.71  E-value=0.21  Score=40.26  Aligned_cols=66  Identities=11%  Similarity=0.008  Sum_probs=47.5

Q ss_pred             CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC---cEEEecchhHHHHHHHHHhcc
Q psy16850         67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE---AGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e---~al~f~sGy~aN~~~i~aL~~  134 (174)
                      -.|++++++.+++..--.+.+  ....+.....+++++.+|+++|.+   ..+++++|..|+..++.++..
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~   83 (362)
T 3ffr_A           15 LYPTVRQHMITALDEKIGVIS--HRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE   83 (362)
T ss_dssp             CCTTHHHHHHHHHHTTTTTSC--TTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHhcCCccCcC--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC
Confidence            378889888888764221111  111223477899999999999873   377888999999999999875

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=92.46  E-value=0.12  Score=43.98  Aligned_cols=64  Identities=17%  Similarity=0.158  Sum_probs=40.5

Q ss_pred             cCcccCCCC----CccchHHHH---HHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcE--EEecchhHH
Q psy16850         59 SNDYLGMSC----HPKVKSAVR---EALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAG--LVFTSCYVA  124 (174)
Q Consensus        59 SndYLGL~~----~p~v~~a~~---~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~a--l~f~sGy~a  124 (174)
                      .++|+|.+.    .|++++++.   +....|  +...+....|...++.++++.+|+++|.+.+  +++++|-++
T Consensus        65 ~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa  137 (438)
T 1wyu_A           65 HKAFLGGGVRSHHVPPVVQALAARGEFLTAY--TPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATAL  137 (438)
T ss_dssp             TTCCCCSSCCCCCCCHHHHHHHTSHHHHHCC--SCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHH
T ss_pred             cccccCCCccCCcCcHHHHHHHhcchhhhcC--CCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHH
Confidence            456888877    566655553   222223  2222345567788999999999999999876  344444433

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=90.55  E-value=0.34  Score=40.74  Aligned_cols=80  Identities=13%  Similarity=-0.063  Sum_probs=49.5

Q ss_pred             cCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHH---HHHHHhcccCC----------CCeeE----------------
Q psy16850         93 SGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVAND---STLFTLGKMIP----------YFTEL----------------  142 (174)
Q Consensus        93 ~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~---~~i~aL~~~~~----------g~~~s----------------  142 (174)
                      ++...-+.+|.+.||++++.+ +.+++++|....+   .++.+|....|          |.++.                
T Consensus        74 Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~  153 (427)
T 3ppl_A           74 YGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF  153 (427)
T ss_dssp             SCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT
T ss_pred             CCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc
Confidence            344445789999999999865 5678888877666   56666654112          44433                


Q ss_pred             -EEEEEecCC----CHHHHHHHHHHhcccccccCC
Q psy16850        143 -IYFYRFLAN----TTDIIKEASKELQEDMIDLTP  172 (174)
Q Consensus       143 -~~~~~f~HN----d~~~Le~~L~~~~~~~~~~~~  172 (174)
                       +.++.++.+    |+++||+.++......|=++|
T Consensus       154 g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p  188 (427)
T 3ppl_A          154 GFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVP  188 (427)
T ss_dssp             TCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECC
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECC
Confidence             244444433    899999888433333333443

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=90.19  E-value=0.19  Score=42.39  Aligned_cols=104  Identities=12%  Similarity=-0.058  Sum_probs=61.0

Q ss_pred             EEEeccCcccC---CCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHHHHHHHhCCC-cEEEecchhHHHH--
Q psy16850         54 VTVYCSNDYLG---MSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE-AGLVFTSCYVAND--  126 (174)
Q Consensus        54 ~inf~SndYLG---L~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~--  126 (174)
                      +|+|+.|+. .   +...|.+++++.+.+ ...+.    .-.-++...-+.+|.+.||+|++.+ +-|++++|....+  
T Consensus        34 ~i~l~~g~~-~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l  108 (422)
T 3d6k_A           34 SLDLTRGKP-SAEQLDLSNDLLSLPGGDFRTKDGV----DCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMF  108 (422)
T ss_dssp             CEECCCCSC-CHHHHHTTGGGGGCSTTCCBCTTCC----BTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHH
T ss_pred             eEeCCCCCC-ChhhCCCcHHHHHHHHHHHhhccch----hhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHH
Confidence            689999887 3   344557777665432 11110    0112333333789999999999875 5688888877543  


Q ss_pred             -HHHHHhccc---C-------CCCeeE-----------------EEEEEecC----CCHHHHHHHHHH
Q psy16850        127 -STLFTLGKM---I-------PYFTEL-----------------IYFYRFLA----NTTDIIKEASKE  162 (174)
Q Consensus       127 -~~i~aL~~~---~-------~g~~~s-----------------~~~~~f~H----Nd~~~Le~~L~~  162 (174)
                       .++.++...   .       ++.+..                 +.++.++.    .|+++|++.+++
T Consensus       109 ~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~  176 (422)
T 3d6k_A          109 DLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKD  176 (422)
T ss_dssp             HHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHTS
T ss_pred             HHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCCCCCHHHHHHHHhc
Confidence             344555431   0       122222                 24555554    589999998865

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=90.06  E-value=0.9  Score=36.26  Aligned_cols=86  Identities=12%  Similarity=-0.006  Sum_probs=54.3

Q ss_pred             CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC---cEEE-ecchhHHHHHHHHHhcccCCCCee-
Q psy16850         67 CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE---AGLV-FTSCYVANDSTLFTLGKMIPYFTE-  141 (174)
Q Consensus        67 ~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e---~al~-f~sGy~aN~~~i~aL~~~~~g~~~-  141 (174)
                      .+|++++++.+.++.    .   + -........++++.||+++|.+   +.++ .++|..|+..++.++.+  +.+-. 
T Consensus        11 ~~~~v~~a~~~~~~~----~---~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~   80 (353)
T 2yrr_A           11 IPERVQKALLRPMRG----H---L-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVL   80 (353)
T ss_dssp             CCHHHHGGGGSCCCC----T---T-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEE
T ss_pred             CCHHHHHHHhccccc----c---c-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEE
Confidence            356666666554432    0   1 0112356899999999999984   4444 47779999988888763  11100 


Q ss_pred             ----------------EEEEEEec-----CCCHHHHHHHHHH
Q psy16850        142 ----------------LIYFYRFL-----ANTTDIIKEASKE  162 (174)
Q Consensus       142 ----------------s~~~~~f~-----HNd~~~Le~~L~~  162 (174)
                                      .+.++.++     +.|+++|++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  122 (353)
T 2yrr_A           81 VNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKR  122 (353)
T ss_dssp             ECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHh
Confidence                            02344444     3689999999986

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=90.04  E-value=1.4  Score=36.81  Aligned_cols=63  Identities=21%  Similarity=0.299  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhCC---------CcEEEecch-hHHHHHHHHHhcccCCCCeeE------------------EEEEEecC
Q psy16850         99 HEKLEEDVARLHQK---------EAGLVFTSC-YVANDSTLFTLGKMIPYFTEL------------------IYFYRFLA  150 (174)
Q Consensus        99 ~~~LE~~lA~~~g~---------e~al~f~sG-y~aN~~~i~aL~~~~~g~~~s------------------~~~~~f~H  150 (174)
                      ..+|++.||+|++.         ++.+++++| -.++..++.++++  +|..+.                  +.++.+++
T Consensus        85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~  162 (428)
T 1iay_A           85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHC  162 (428)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTTCCEEEEECC
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhcCCEEEEeec
Confidence            67899999999861         344555555 4677788888865  332221                  35556654


Q ss_pred             C-------CHHHHHHHHHHh
Q psy16850        151 N-------TTDIIKEASKEL  163 (174)
Q Consensus       151 N-------d~~~Le~~L~~~  163 (174)
                      +       |+++|++.+++.
T Consensus       163 ~~~~~~~~d~~~l~~~l~~~  182 (428)
T 1iay_A          163 ESSNNFKITSKAVKEAYENA  182 (428)
T ss_dssp             CTTTTTCCCHHHHHHHHHHH
T ss_pred             CCccCCcCCHHHHHHHHHHH
Confidence            3       899999999864

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=88.70  E-value=0.99  Score=37.65  Aligned_cols=103  Identities=6%  Similarity=-0.099  Sum_probs=60.5

Q ss_pred             EEEeccCcccC--CCCCccchHHHH--HHHHHcCCCcccccccc-CCchHHHHHHHHHHHHhCCC-cEEEecchhHHHH-
Q psy16850         54 VTVYCSNDYLG--MSCHPKVKSAVR--EALEKFGTGAGGTRNIS-GNSLFHEKLEEDVARLHQKE-AGLVFTSCYVAND-  126 (174)
Q Consensus        54 ~inf~SndYLG--L~~~p~v~~a~~--~al~~~G~gs~~Sr~~~-G~~~~~~~LE~~lA~~~g~e-~al~f~sGy~aN~-  126 (174)
                      .|||+..+.=-  +...|++++++.  ++++ .+.    .-.-+ +...-+.+|.+.||++++.+ +.+++++|....+ 
T Consensus        27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~----~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~  101 (423)
T 3ez1_A           27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGL----DLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQ  101 (423)
T ss_dssp             CEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTE----ETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHH
T ss_pred             eEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cch----hhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHH
Confidence            46776653211  334557777764  4332 111    11223 34445789999999999865 4677777776555 


Q ss_pred             --HHHHHhcccCC---------CCeeE-----------------EEEEEecCC----CHHHHHHHHH
Q psy16850        127 --STLFTLGKMIP---------YFTEL-----------------IYFYRFLAN----TTDIIKEASK  161 (174)
Q Consensus       127 --~~i~aL~~~~~---------g~~~s-----------------~~~~~f~HN----d~~~Le~~L~  161 (174)
                        .++.++....+         |.++.                 +.++.++.+    |+++|++.++
T Consensus       102 ~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~  168 (423)
T 3ez1_A          102 GLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDVDAVERLAG  168 (423)
T ss_dssp             HHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCCCCCHHHHHHHHh
Confidence              57777654113         34432                 245555553    8999999997

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=88.45  E-value=0.91  Score=39.06  Aligned_cols=75  Identities=17%  Similarity=0.091  Sum_probs=43.7

Q ss_pred             EEEeccCcccCCCCCcc-chHHHHHHHHHc-CCCccccccccCCchHHHHHHHHH----HHHhCCCc-----------EE
Q psy16850         54 VTVYCSNDYLGMSCHPK-VKSAVREALEKF-GTGAGGTRNISGNSLFHEKLEEDV----ARLHQKEA-----------GL  116 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~-v~~a~~~al~~~-G~gs~~Sr~~~G~~~~~~~LE~~l----A~~~g~e~-----------al  116 (174)
                      ...+.+-.|+|.-..+. ....+.+.+..+ ..+. ..   ....+...++|+++    |+++|.+.           ++
T Consensus        68 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~-~~---~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v  143 (486)
T 1js3_A           68 VTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIG-FS---WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGV  143 (486)
T ss_dssp             CCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCC-SS---GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEE
T ss_pred             CCCCCCCCceEeCCCCCCHHHHHHHHHHHHhCcCc-cc---cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeE
Confidence            44566778999765433 222233333322 1111 11   11234566666655    66668774           68


Q ss_pred             EecchhHHHHHHHHHh
Q psy16850        117 VFTSCYVANDSTLFTL  132 (174)
Q Consensus       117 ~f~sGy~aN~~~i~aL  132 (174)
                      ++++|..||+..+.++
T Consensus       144 ~t~ggTeA~~~al~~~  159 (486)
T 1js3_A          144 IQGSASEATLVALLAA  159 (486)
T ss_dssp             EESCHHHHHHHHHHHH
T ss_pred             EcCCcHHHHHHHHHHH
Confidence            9999999999888765

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=88.25  E-value=0.51  Score=39.15  Aligned_cols=80  Identities=9%  Similarity=-0.045  Sum_probs=49.4

Q ss_pred             eeEEEeccCcccCCCCCccchHHHHHHHHHcCC-Cc-cccccccCCchHHHHHHHHHHHHh--------CCCcEEEecch
Q psy16850         52 KEVTVYCSNDYLGMSCHPKVKSAVREALEKFGT-GA-GGTRNISGNSLFHEKLEEDVARLH--------QKEAGLVFTSC  121 (174)
Q Consensus        52 ~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~-gs-~~Sr~~~G~~~~~~~LE~~lA~~~--------g~e~al~f~sG  121 (174)
                      ..+|||+..+.-.   .|.+.+++.+++.+.-. +. ..+-.-++...-..+|.+.||+|+        ..+..++.++|
T Consensus        31 ~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~  107 (417)
T 3g7q_A           31 PGAIMLGGGNPAH---IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGS  107 (417)
T ss_dssp             -CCEECSCCCCCC---CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCH
T ss_pred             CCceEecCcCCCC---CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCc
Confidence            4578888875322   45445555555443211 10 011122344445789999999997        24678888889


Q ss_pred             hHHHHHHHHHhcc
Q psy16850        122 YVANDSTLFTLGK  134 (174)
Q Consensus       122 y~aN~~~i~aL~~  134 (174)
                      ..|+..++.++.+
T Consensus       108 t~al~~~~~~l~~  120 (417)
T 3g7q_A          108 QSAFFYLFNLFAG  120 (417)
T ss_dssp             HHHHHHHHHHHSB
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999988865

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=86.41  E-value=0.49  Score=40.59  Aligned_cols=72  Identities=15%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             CccchHHHHHHHHH-cCCCccc---cccccCCchHHHHHHHHHHHHhCCCc--EEEe--cchhHHHHHHHHHhcccCCCC
Q psy16850         68 HPKVKSAVREALEK-FGTGAGG---TRNISGNSLFHEKLEEDVARLHQKEA--GLVF--TSCYVANDSTLFTLGKMIPYF  139 (174)
Q Consensus        68 ~p~v~~a~~~al~~-~G~gs~~---Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f--~sGy~aN~~~i~aL~~~~~g~  139 (174)
                      .|+|++++.+.+.. +|.+++.   +..-.-...+.++..+.||+++|.++  -++|  ++|..++-.++..+..  +|.
T Consensus        39 p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~--~gd  116 (386)
T 3qm2_A           39 PAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLG--DKT  116 (386)
T ss_dssp             CHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCT--TCC
T ss_pred             CHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccC--CCC
Confidence            67777777766544 3434331   11111124678899999999999863  3666  6899998888888864  565


Q ss_pred             ee
Q psy16850        140 TE  141 (174)
Q Consensus       140 ~~  141 (174)
                      +.
T Consensus       117 ~v  118 (386)
T 3qm2_A          117 TA  118 (386)
T ss_dssp             EE
T ss_pred             eE
Confidence            54

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=85.82  E-value=0.93  Score=38.47  Aligned_cols=64  Identities=13%  Similarity=0.114  Sum_probs=43.7

Q ss_pred             CccchHHHHHHHHHc-CCCccccccccC-----CchHHHHHHHHHHHHhCCC--cEEEe--cchhHHHHHHHHHhc
Q psy16850         68 HPKVKSAVREALEKF-GTGAGGTRNISG-----NSLFHEKLEEDVARLHQKE--AGLVF--TSCYVANDSTLFTLG  133 (174)
Q Consensus        68 ~p~v~~a~~~al~~~-G~gs~~Sr~~~G-----~~~~~~~LE~~lA~~~g~e--~al~f--~sGy~aN~~~i~aL~  133 (174)
                      .|+|++++.+.+..| |.+++  -.-.+     ...++++..+.||+++|.+  .-++|  ++|..++-.++..+.
T Consensus        17 ~~~V~~a~~~~~~~~~~~~~s--~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~   90 (361)
T 3m5u_A           17 PLEILEQAQKELCDYQGRGYS--IMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA   90 (361)
T ss_dssp             CHHHHHHHHHTSSSGGGSSSC--GGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhcccCCce--eeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC
Confidence            778888888776543 33332  21111     1478888999999999985  25666  778888888887775

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=85.41  E-value=3.3  Score=34.72  Aligned_cols=68  Identities=15%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             cCCchHHHHHHHHHHHHhCCC----------cEEEecch-hHHHHHHHHHhcccCCCCeeE-----------------EE
Q psy16850         93 SGNSLFHEKLEEDVARLHQKE----------AGLVFTSC-YVANDSTLFTLGKMIPYFTEL-----------------IY  144 (174)
Q Consensus        93 ~G~~~~~~~LE~~lA~~~g~e----------~al~f~sG-y~aN~~~i~aL~~~~~g~~~s-----------------~~  144 (174)
                      .|...+.+++.+.+++++|.+          +.+++++| ..++..++.+|.+  +|..+.                 +.
T Consensus        78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~  155 (425)
T 2r2n_A           78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--PGDNVLLDEPAYSGTLQSLHPLGCN  155 (425)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHGGGTCE
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCE
Confidence            466778888888888888854          35666666 5567778888865  454432                 24


Q ss_pred             EEEecC----CCHHHHHHHHHH
Q psy16850        145 FYRFLA----NTTDIIKEASKE  162 (174)
Q Consensus       145 ~~~f~H----Nd~~~Le~~L~~  162 (174)
                      ++.+++    .|+++||+.+++
T Consensus       156 ~~~v~~~~~~~d~~~l~~~l~~  177 (425)
T 2r2n_A          156 IINVASDESGIVPDSLRDILSR  177 (425)
T ss_dssp             EEEECEETTEECHHHHHHHHTT
T ss_pred             EEEeCcCCCCCCHHHHHHHHHh
Confidence            555554    489999999974

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=84.91  E-value=1  Score=38.59  Aligned_cols=87  Identities=13%  Similarity=0.037  Sum_probs=52.8

Q ss_pred             EEeccCcccCCC-CCccchHHHHHHHHHc-CCCccc---cccccCCchHHHHHHHHHHHHhCCCc--EEEe--cchhHHH
Q psy16850         55 TVYCSNDYLGMS-CHPKVKSAVREALEKF-GTGAGG---TRNISGNSLFHEKLEEDVARLHQKEA--GLVF--TSCYVAN  125 (174)
Q Consensus        55 inf~SndYLGL~-~~p~v~~a~~~al~~~-G~gs~~---Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f--~sGy~aN  125 (174)
                      ++++.=|.-+-+ -.|+|++++.+.+..| |.|++.   +..-.-...+.++..+.||+++|.++  -++|  ++|..++
T Consensus        11 ~~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~   90 (377)
T 3e77_A           11 VDLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQF   90 (377)
T ss_dssp             ----CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred             cCcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHH
Confidence            344443333334 4788999998877554 333331   11101124678899999999999874  4666  5788888


Q ss_pred             HHHHHHhcccCCCCee
Q psy16850        126 DSTLFTLGKMIPYFTE  141 (174)
Q Consensus       126 ~~~i~aL~~~~~g~~~  141 (174)
                      -.++..+....+|.+.
T Consensus        91 n~a~~~l~~~~~Gd~v  106 (377)
T 3e77_A           91 SAVPLNLIGLKAGRCA  106 (377)
T ss_dssp             HHHHHHHGGGSTTCEE
T ss_pred             HHHHHhccCCCCCCeE
Confidence            8888888653235553

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=84.56  E-value=1.6  Score=36.19  Aligned_cols=38  Identities=13%  Similarity=0.102  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHHhCCCc--EEE--ecchhHHHHHHHHHhcc
Q psy16850         97 LFHEKLEEDVARLHQKEA--GLV--FTSCYVANDSTLFTLGK  134 (174)
Q Consensus        97 ~~~~~LE~~lA~~~g~e~--al~--f~sGy~aN~~~i~aL~~  134 (174)
                      ..++++++.||+++|.+.  .++  .++|..++..++.++.+
T Consensus        78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~  119 (398)
T 2fyf_A           78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID  119 (398)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC
Confidence            468899999999999862  444  58899999999999865

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=83.03  E-value=2  Score=34.86  Aligned_cols=71  Identities=8%  Similarity=-0.051  Sum_probs=45.0

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCC---cEEE-ecchhHHHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKE---AGLV-FTSCYVANDST  128 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e---~al~-f~sGy~aN~~~  128 (174)
                      ...||.-+-+   .-+|++++++.+.+    .... +   .+...+.+++++.+|+++|.+   ..++ .++|..|+..+
T Consensus        19 ~~~~~~pgp~---~~~~~v~~a~~~~~----~~~~-~---~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~   87 (376)
T 3f0h_A           19 GMLNFTVGPV---MSSEEVRAIGAEQV----PYFR-T---TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAV   87 (376)
T ss_dssp             SCEECSSSSC---CCCHHHHHHHTSCC----CCCS-S---HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHH
T ss_pred             CceeecCCCC---CCcHHHHHHhcCCC----CCCC-C---HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHH
Confidence            3455554432   33666666655432    1111 1   122367899999999999987   3444 46779999999


Q ss_pred             HHHhcc
Q psy16850        129 LFTLGK  134 (174)
Q Consensus       129 i~aL~~  134 (174)
                      +.++.+
T Consensus        88 ~~~~~~   93 (376)
T 3f0h_A           88 VMNCFT   93 (376)
T ss_dssp             HHHHCC
T ss_pred             HHhccC
Confidence            999875

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=82.38  E-value=1.1  Score=38.57  Aligned_cols=40  Identities=13%  Similarity=0.064  Sum_probs=33.9

Q ss_pred             CCchHHHHHHHHHHHHhCCCcEEEecchh-HHHHHHHHHhcc
Q psy16850         94 GNSLFHEKLEEDVARLHQKEAGLVFTSCY-VANDSTLFTLGK  134 (174)
Q Consensus        94 G~~~~~~~LE~~lA~~~g~e~al~f~sGy-~aN~~~i~aL~~  134 (174)
                      .....+.++|+.+|+ +|.+++++|++|. .+|..++.++++
T Consensus        54 ~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~   94 (446)
T 2x3l_A           54 HPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQ   94 (446)
T ss_dssp             SCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTT
T ss_pred             CcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcC
Confidence            355678999999999 9998888888876 889999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d2bwna1	396	c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rho	3e-33
d1bs0a_	383	c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a	2e-26
d1fc4a_	401	c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E	1e-25
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	2e-10
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	3e-09
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	5e-07
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	4e-06

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

 Score =  119 bits (299), Expect = 3e-33
 Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 2/127 (1%)

Query: 11  YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAA--YEYTDSEKEVTVYCSNDYLGMSCH 68
           Y     + I K   +  YR F  + R    FP A        ++++TV+C NDYLGM  H
Sbjct: 2   YNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQH 61

Query: 69  PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDST 128
           P V +A+ EALE  G G+GGTRNISG + +H +LE ++A LHQKEA LVF+S Y AND+T
Sbjct: 62  PVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDAT 121

Query: 129 LFTLGKM 135
           L TL  +
Sbjct: 122 LSTLRVL 128

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (251), Expect = 2e-26
 Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 11  YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPK 70
           +++  +  +  ++   + R    V +      A       +++   + SNDYLG+S HP+
Sbjct: 2   WQEKINAALDARRAADALRRRYPVAQ-----GAGRWLVADDRQYLNFSSNDYLGLSHHPQ 56

Query: 71  VKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF 130
           +  A ++  E+FG G+GG+ ++SG S+ H+ LEE++A        L+F S + AN + + 
Sbjct: 57  IIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIA 116

Query: 131 TLGKMIPYF 139
            +       
Sbjct: 117 AMMAKEDRI 125

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

 Score = 98.7 bits (245), Expect = 1e-25
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 6/137 (4%)

Query: 3   TTMREPFPYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDY 62
           + MR  F         +   + +  ++      R+ T+   A         V  +C+N+Y
Sbjct: 2   SHMRGEF--YQQLTNDLETARAEGLFKEE----RIITSAQQADITVADGSHVINFCANNY 55

Query: 63  LGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCY 122
           LG++ HP + +A +  ++  G G    R I G    H++LE+ +A     E  ++++SC+
Sbjct: 56  LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCF 115

Query: 123 VANDSTLFTLGKMIPYF 139
            AN     TL       
Sbjct: 116 DANGGLFETLLGAEDAI 132

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 56.4 bits (134), Expect = 2e-10
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 70  KVKSAVREALEKFGTGAGGTRNISGNSL-------FHEKLEEDVARLHQKEAGLVFTSCY 122
           K+    R+AL ++G G       +   L        H+ +   + +    +   V     
Sbjct: 13  KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAR 72

Query: 123 VANDSTLFTLGK 134
            A  + + +L K
Sbjct: 73  EAKFAVMHSLAK 84

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 52.5 bits (124), Expect = 3e-09
 Identities = 10/112 (8%), Positives = 31/112 (27%), Gaps = 10/112 (8%)

Query: 57  YCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGL 116
           + S++  G    P+V  A+ +        + G     G      +++     + +++  +
Sbjct: 7   FSSDNIAG--ASPEVAQALVKH-------SSGQAGPYGTDELTAQVKRKFCEIFERDVEV 57

Query: 117 VFT-SCYVANDSTLFTLGKMIPYFTELIYFYRFLANTTDIIKEASKELQEDM 167
               +   AN   L  +             +            ++      +
Sbjct: 58  FLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTV 109

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 46.1 bits (107), Expect = 5e-07
 Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 10/69 (14%)

Query: 59  SNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVF 118
            NDY     HPK+   +         G G             K    +  L ++    V 
Sbjct: 5   VNDYSV-GMHPKILDLMARDNMTQHAGYGQDS-------HCAKAARLIGELLERPDADVH 56

Query: 119 --TSCYVAN 125
             +     N
Sbjct: 57  FISGGTQTN 65

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 74  AVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG 133
            +R+A+ +   G      + G      +LE   A    KEA L   S  + N  ++    
Sbjct: 15  EMRKAMAQAEVGDD----VYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT 70

Query: 134 KM 135
           + 
Sbjct: 71  QR 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	100.0
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	100.0
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.35
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.1
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	98.62
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.47
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	98.05
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	97.98
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	97.91
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	97.91
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	97.82
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	97.74
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	97.54
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	97.52
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	97.22
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	97.18
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	97.08
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	97.02
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	96.94
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	96.93
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	96.88
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	96.86
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	96.81
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	96.75
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	96.74
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	96.71
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	96.55
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	96.47
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	96.45
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	96.37
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	96.35
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	95.95
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	95.93
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	95.93
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	95.67
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	95.59
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	95.55
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	95.51
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	94.23
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	93.97
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	93.57
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	92.47
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	91.81
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	91.79
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	90.76
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	89.99
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	89.57
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	84.75
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	83.95
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	81.64
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	81.23
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	80.7

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=100.00  E-value=8.1e-40  Score=286.15  Aligned_cols=157  Identities=40%  Similarity=0.590  Sum_probs=139.0

Q ss_pred             ChHHHHHHHHHHHHHhCCCCceeeecccccCCCCce--eeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcc
Q psy16850         10 PYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAY--EYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAG   87 (174)
Q Consensus        10 ~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~--~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~   87 (174)
                      ||+.+++++|++++++|+||.+..+++..+..+...  ....++++++||||||||||++||+|++++++++++||+|++
T Consensus         1 ~~~~~~~~~l~~l~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~   80 (396)
T d2bwna1           1 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSG   80 (396)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCC
T ss_pred             ChHHHHHHHHHHHHHcCCCccccccccccCCCCcceEeecCCCCeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCcc
Confidence            578999999999999999999999988766544322  223456899999999999999999999999999999999999


Q ss_pred             ccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc----------------CCCCeeE-EEEEEecC
Q psy16850         88 GTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM----------------IPYFTEL-IYFYRFLA  150 (174)
Q Consensus        88 ~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~----------------~~g~~~s-~~~~~f~H  150 (174)
                      |||+++|+.++|++||++||+|+|+|+|++|+|||+||+++|++|+..                ++|++++ +.+++|+|
T Consensus        81 ~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H  160 (396)
T d2bwna1          81 GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH  160 (396)
T ss_dssp             SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT
T ss_pred             ccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeec
Confidence            999999999999999999999999999999999999999999999531                3455555 78999999


Q ss_pred             CCHHHHHHHHHHhccc
Q psy16850        151 NTTDIIKEASKELQED  166 (174)
Q Consensus       151 Nd~~~Le~~L~~~~~~  166 (174)
                      ||+++|++++++..+.
T Consensus       161 nd~~~l~~l~~~~~~~  176 (396)
T d2bwna1         161 NDVAHLRELIAADDPA  176 (396)
T ss_dssp             TCHHHHHHHHHHSCTT
T ss_pred             chHHHhhhHHhhhccc
Confidence            9999999999987664

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-38  Score=271.11  Aligned_cols=152  Identities=23%  Similarity=0.357  Sum_probs=137.8

Q ss_pred             ChHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeeecCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcccc
Q psy16850         10 PYEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYTDSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGT   89 (174)
Q Consensus        10 ~~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~S   89 (174)
                      +|++.+++.|+++++.+.||+.+++.+.     .+.+++++|+++|||+|||||||++||++++++.+++++||+|+++|
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~g~~i~~~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~s   75 (383)
T d1bs0a_           1 SWQEKINAALDARRAADALRRRYPVAQG-----AGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGS   75 (383)
T ss_dssp             CHHHHHHHHHHHCCGGGCCCCCCCCSBC-----SSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSB
T ss_pred             ChHHHHHHHHHHHHHhCCCccccccCCC-----CCCeEEECCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCcc
Confidence            5888999999999999999998887654     45678899999999999999999999999999999999999999999


Q ss_pred             ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc--------------CCCCeeE-EEEEEecCCCHH
Q psy16850         90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM--------------IPYFTEL-IYFYRFLANTTD  154 (174)
Q Consensus        90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~--------------~~g~~~s-~~~~~f~HNd~~  154 (174)
                      |.++|+.++|++||++||+|+|+|+|++|+|||+||++++++|++.              .+|++.+ +.+++|+|||++
T Consensus        76 r~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hnd~~  155 (383)
T d1bs0a_          76 GHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVT  155 (383)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHH
T ss_pred             ccccCcchHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecchHHH
Confidence            9999999999999999999999999999999999999999999873              1223333 588999999999


Q ss_pred             HHHHHHHHhccc
Q psy16850        155 IIKEASKELQED  166 (174)
Q Consensus       155 ~Le~~L~~~~~~  166 (174)
                      +||++|++..+.
T Consensus       156 ~le~~l~~~~~~  167 (383)
T d1bs0a_         156 HLARLLASPCPG  167 (383)
T ss_dssp             HHHHHHHSCCSS
T ss_pred             HHHHHhcccCCC
Confidence            999999987664

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-35  Score=254.73  Aligned_cols=150  Identities=22%  Similarity=0.387  Sum_probs=133.3

Q ss_pred             hHHHHHHHHHHHHHhCCCCceeeecccccCCCCceeee-cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCcccc
Q psy16850         11 YEDFFHEQIMKKKRDHSYRVFKKVNRLATNFPAAYEYT-DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGT   89 (174)
Q Consensus        11 ~~~~~~~~L~~~~~~g~~r~~~~~~~~~~~~~~~~~~~-~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~S   89 (174)
                      |...+++.|++++++|+||+++++++.++     .+++ .||+++|||+|||||||++||+|++++++++++||+|+++|
T Consensus         8 ~~~~~~~~l~~~~~~g~~r~~~~i~~~~g-----~~v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~s   82 (401)
T d1fc4a_           8 FYQQLTNDLETARAEGLFKEERIITSAQQ-----ADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASV   82 (401)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCBCSCSS-----SEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSC
T ss_pred             HHHHHHHHHHHHHHcCCCCcceeccCCCC-----CeEEecCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccc
Confidence            55567889999999999999999887543     3343 48999999999999999999999999999999999999999


Q ss_pred             ccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhccc--------------CCCCeeE-EEEEEecCCCHH
Q psy16850         90 RNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKM--------------IPYFTEL-IYFYRFLANTTD  154 (174)
Q Consensus        90 r~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~--------------~~g~~~s-~~~~~f~HNd~~  154 (174)
                      |.++|+.++|++||++||+|+|+|+|++|+|||+||+++|++|++.              .+|+.++ +.+.+|+|||++
T Consensus        83 r~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d~~  162 (401)
T d1fc4a_          83 RFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQ  162 (401)
T ss_dssp             HHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHH
T ss_pred             eeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCCChH
Confidence            9999999999999999999999999999999999999999999873              1222333 588899999999


Q ss_pred             HHHHHHHHhcc
Q psy16850        155 IIKEASKELQE  165 (174)
Q Consensus       155 ~Le~~L~~~~~  165 (174)
                      +||+++++..+
T Consensus       163 ~le~~~~~~~~  173 (401)
T d1fc4a_         163 ELEARLKEARE  173 (401)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhh
Confidence            99999988764

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.35  E-value=4e-13  Score=106.55  Aligned_cols=104  Identities=11%  Similarity=0.078  Sum_probs=77.2

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEe-cchhHHHHHHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVF-TSCYVANDSTLFT  131 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f-~sGy~aN~~~i~a  131 (174)
                      +++||+|+||+|+  ||+|++|+.++...       ....+|..+.+++||+.+|+++|.+++++| +||+.||..++.+
T Consensus         3 ~~~~f~s~n~~g~--~P~v~~A~~~a~~~-------~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~   73 (345)
T d1v72a1           3 PALGFSSDNIAGA--SPEVAQALVKHSSG-------QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSA   73 (345)
T ss_dssp             CCCBCSCGGGCCC--CHHHHHHHHHTTSS-------CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHT
T ss_pred             CCcCcCCCCCCCC--CHHHHHHHHHHhcc-------CccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHH
Confidence            4789999999997  89999998875322       223356789999999999999999999988 9999999999998


Q ss_pred             hccc--------------CCCCe---------eEEEEEEecCCCHHHHHHHHHHhcc
Q psy16850        132 LGKM--------------IPYFT---------ELIYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       132 L~~~--------------~~g~~---------~s~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                      +...              ...+.         .........+.++++|+..+.....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  130 (345)
T d1v72a1          74 MTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVG  130 (345)
T ss_dssp             SCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTT
T ss_pred             HHhcCCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhccccc
Confidence            8752              00000         0012234557888888888776543

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.10  E-value=1.6e-10  Score=94.39  Aligned_cols=94  Identities=14%  Similarity=0.154  Sum_probs=68.8

Q ss_pred             cchHHHHHHHHHcCCCccccccccC-------CchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850         70 KVKSAVREALEKFGTGAGGTRNISG-------NSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL  142 (174)
Q Consensus        70 ~v~~a~~~al~~~G~gs~~Sr~~~G-------~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s  142 (174)
                      ++.+++.+++.+||.|.+.++...+       +.++|+.+|+.+|+|+|.|+++++++|+.||..+|.+|++  +|+.+.
T Consensus        13 ~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~--~gd~Vi   90 (364)
T d2e7ja1          13 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAK--KDAWVV   90 (364)
T ss_dssp             CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCC--TTCEEE
T ss_pred             cCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhC--CCcEEE
Confidence            7788888899999998877665543       2358999999999999999999999999999999999987  454332


Q ss_pred             -----------------EEEEEecCC-------CHHHHHHHHHHhcc
Q psy16850        143 -----------------IYFYRFLAN-------TTDIIKEASKELQE  165 (174)
Q Consensus       143 -----------------~~~~~f~HN-------d~~~Le~~L~~~~~  165 (174)
                                       +.++.++|+       |+++|++++.+..+
T Consensus        91 ~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k  137 (364)
T d2e7ja1          91 MDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKK  137 (364)
T ss_dssp             EETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT
T ss_pred             eecccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcc
Confidence                             477888886       57899999987654

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=1.5e-08  Score=79.85  Aligned_cols=70  Identities=21%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             EEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         55 TVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        55 inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      |||.| ||---- +|++++|+.++.    .|    ...+|..+.+.+||++||+++|.|++++++||+.||.++|.++.+
T Consensus         2 ~~~~~-~~~t~p-~p~v~~A~~~a~----~g----~~~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~   71 (343)
T d1m6sa_           2 IDLRS-DTVTKP-TEEMRKAMAQAE----VG----DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ   71 (343)
T ss_dssp             EECSC-GGGCCC-CHHHHHHHHTCC----CC----CGGGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCC
T ss_pred             ccccc-ccCCCC-CHHHHHHHHhhh----cC----CcccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhc
Confidence            55544 332222 799898887642    22    224677899999999999999999999999999999999999987

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.47  E-value=1.8e-07  Score=71.92  Aligned_cols=71  Identities=15%  Similarity=0.104  Sum_probs=57.5

Q ss_pred             EEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHHHHh
Q psy16850         55 TVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        55 inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i~aL  132 (174)
                      .+| .|||+. ..||+|++|+.++...++.|       +|..+..++|++.||+++|.+.  .++.++|..||..++.++
T Consensus         2 ~~f-~nd~~~-g~~P~v~eAl~~~~~~~~~~-------y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~   72 (340)
T d1svva_           2 YSF-VNDYSV-GMHPKILDLMARDNMTQHAG-------YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA   72 (340)
T ss_dssp             EEC-SCSCSS-CCCHHHHHHHHHHTTCCCCS-------TTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH
T ss_pred             CCc-ccCCCC-CCCHHHHHHHHHHhhcCCCC-------CCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHH
Confidence            367 679998 55999999999887655544       3567888999999999999885  345578999999999988


Q ss_pred             cc
Q psy16850        133 GK  134 (174)
Q Consensus       133 ~~  134 (174)
                      ..
T Consensus        73 ~~   74 (340)
T d1svva_          73 LR   74 (340)
T ss_dssp             CC
T ss_pred             hh
Confidence            75

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=98.05  E-value=7e-06  Score=69.75  Aligned_cols=110  Identities=17%  Similarity=0.048  Sum_probs=80.1

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-CcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-EAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-e~al~f~sGy~  123 (174)
                      ..+|+++|||.|+   .-||- .||+|++|+++.+++....       ........++.+.+++..+. +.+.+.+||..
T Consensus        48 D~~G~~ylD~~~~~~~~~lGh-~hp~i~~ai~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~~v~f~~sGse  119 (427)
T d2gsaa_          48 DVDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTSF-------GAPCALENVLAEMVNDAVPSIEMVRFVNSGTE  119 (427)
T ss_dssp             ETTSCEEEESSGGGTTTTTCB-TCHHHHHHHHHHHTTCSCC-------SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHH
T ss_pred             ECCCCEEEEechhHHHHhccC-CcHHHHHHHHHHHHhcCcc-------ccchhHHHHHHHHHHhhCCccccccccCCcHH
Confidence            3789999999876   44777 4999999999999874322       22456778899999998754 56677789999


Q ss_pred             HHHHHHHHhcc------------cCCCC-----------------------ee--EEEEEEecCCCHHHHHHHHHHhcc
Q psy16850        124 ANDSTLFTLGK------------MIPYF-----------------------TE--LIYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       124 aN~~~i~aL~~------------~~~g~-----------------------~~--s~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                      ||-+.+.....            ...|.                       ..  ......++|||+++||+++++...
T Consensus       120 A~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~  198 (427)
T d2gsaa_         120 ACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPG  198 (427)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCC
Confidence            99999885431            01111                       00  035678899999999999987544

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=97.98  E-value=6.7e-06  Score=70.68  Aligned_cols=100  Identities=12%  Similarity=-0.076  Sum_probs=70.6

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~  133 (174)
                      +|+|-|-..     ...+.++...++.   +|    .-++|..+.+.+||+.+|+++|+|.||.++||.+||..++.+++
T Consensus        44 ~iDl~sDs~-----t~am~~~~~aa~~---~G----Dd~Y~~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~  111 (456)
T d1c7ga_          44 YIDLLTDSG-----TNAMSDKQWAGMM---IG----DEAYAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAI  111 (456)
T ss_dssp             SEECSCSSS-----CCCEEHHHHHHTT---SC----CCCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHC
T ss_pred             eeEcccCCC-----cccchHHHHHHHh---cc----chhccCCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhc
Confidence            566666442     2345555554432   22    23466788999999999999999999999999999999999998


Q ss_pred             ccCCCCeeEE-------------------EE-----------EEec-CCCHHHHHHHHHHhcccc
Q psy16850        134 KMIPYFTELI-------------------YF-----------YRFL-ANTTDIIKEASKELQEDM  167 (174)
Q Consensus       134 ~~~~g~~~s~-------------------~~-----------~~f~-HNd~~~Le~~L~~~~~~~  167 (174)
                      +  +|..+..                   .+           ..|+ +.|+++||+.+++..+..
T Consensus       112 ~--~Gd~Vi~~~~f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~  174 (456)
T d1c7ga_         112 K--PGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAEN  174 (456)
T ss_dssp             C--TTEEEEESSCCHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGG
T ss_pred             C--CCCeEecCcchHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCcc
Confidence            7  4433210                   00           1232 559999999999887654

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.91  E-value=3.7e-05  Score=62.34  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=43.9

Q ss_pred             ccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850         69 PKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        69 p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      ++-++++.++++. |      .+..|  +..++||++||+++|.+.|++++||..|+..++.+|
T Consensus        12 ~~~~~~~~~~~~~-~------~~~~G--~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al   66 (376)
T d1mdoa_          12 AEELAAVKTVLDS-G------WITTG--PKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMAL   66 (376)
T ss_dssp             HHHHHHHHHHHHH-T------CCSSS--HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc-C------CCcCC--HHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHh
Confidence            4445666666653 3      22234  678999999999999999999999999999999998

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.91  E-value=1.3e-06  Score=72.50  Aligned_cols=96  Identities=16%  Similarity=0.091  Sum_probs=70.9

Q ss_pred             CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecchhHHHHHHHHHhccc-
Q psy16850         60 NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTSCYVANDSTLFTLGKM-  135 (174)
Q Consensus        60 ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~sGy~aN~~~i~aL~~~-  135 (174)
                      +||+|++.++.+.++..++++.|+-++          ....+|++..++.++   .|+++++++|+.|+.++|.+|... 
T Consensus        23 ~~~~gl~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~~~~   92 (366)
T d2aeua1          23 YDLSGLSGGFLIDEKDKALLNTYIGSS----------YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKK   92 (366)
T ss_dssp             EECSSCCCCCCCCHHHHHHHTSTTHHH----------HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHCCSE
T ss_pred             hhhccCCCCCCccHHHHHHHHHhcCch----------hhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhCCCC
Confidence            588999999999999999998875322          234677777777775   457899999999999999999762 


Q ss_pred             ----CC--CCeeE-------EEEEEecCCCHHHHHHHHHHhcc
Q psy16850        136 ----IP--YFTEL-------IYFYRFLANTTDIIKEASKELQE  165 (174)
Q Consensus       136 ----~~--g~~~s-------~~~~~f~HNd~~~Le~~L~~~~~  165 (174)
                          ++  .++.+       +....+.|+|+++|++.+.....
T Consensus        93 ~vi~~~~~~~~~~~~~~~~l~g~~~v~~~d~e~l~~~i~~~tk  135 (366)
T d2aeua1          93 VIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKDTL  135 (366)
T ss_dssp             EEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTTCCTTEE
T ss_pred             EEEEecCCCcchhHHHHHHhcCCeEECCCCHHHHHHhcCCCce
Confidence                11  12222       12345789999999887766544

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=4.5e-05  Score=64.27  Aligned_cols=79  Identities=16%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             ecCCeeEEEeccCc---ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCSND---YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~Snd---YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|||.++-   -||- .||+|++|+.+.+++++..+.   ..  ......++++.++++.+.+.+.+++||..|
T Consensus        37 D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Av~~q~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~v~~~~sGseA  110 (404)
T d2byla1          37 DVEGRKYFDFLSSISAVNQGH-CHPKIVNALKSQVDKLTLTSR---AF--YNNVLGEYEEYITKLFNYHKVLPMNTGVEA  110 (404)
T ss_dssp             ETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCCT---TE--EESSHHHHHHHHHHHHTCSEEEEESSHHHH
T ss_pred             ECCCCEEEEecCCHHHHhhcC-CCHHHHHHHHHHHhhCCCccc---cc--ccchHHHHHHhhhhcccccccccccCcccc
Confidence            47899999998742   2454 499999999999988765432   11  345678899999999999999999999999


Q ss_pred             HHHHHHHh
Q psy16850        125 NDSTLFTL  132 (174)
Q Consensus       125 N~~~i~aL  132 (174)
                      |-..|..-
T Consensus       111 ~e~Aik~a  118 (404)
T d2byla1         111 GETACKLA  118 (404)
T ss_dssp             HHHHHHHH
T ss_pred             chhHHHHH
Confidence            99999764

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=2.6e-05  Score=66.04  Aligned_cols=43  Identities=16%  Similarity=-0.057  Sum_probs=39.6

Q ss_pred             ccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcc
Q psy16850         92 ISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGK  134 (174)
Q Consensus        92 ~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~  134 (174)
                      ++|..+...+||+++|+++|.|.|+.++||.+||..+|.++.+
T Consensus        69 ~Y~~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~  111 (467)
T d2v1pa1          69 AFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK  111 (467)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHH
T ss_pred             hhcCCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhh
Confidence            4566788899999999999999999999999999999999975

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.54  E-value=8.7e-05  Score=62.27  Aligned_cols=79  Identities=16%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHH
Q psy16850         48 TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVA  124 (174)
Q Consensus        48 ~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~a  124 (174)
                      ..+|+++|+|.|   +.-||- .||+|++|+.+.+++.+..+.+   .  +...+..+|+.++++.+.+.+.++.||..|
T Consensus        35 D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a  108 (404)
T d1z7da1          35 DVNDKRYYDFLSAYSSVNQGH-CHPNILNAMINQAKNLTICSRA---F--FSVPLGICERYLTNLLGYDKVLMMNTGAEA  108 (404)
T ss_dssp             ETTCCEEEESSHHHHTTTTCB-TCHHHHHHHHHHHTTCSCCCTT---S--EEHHHHHHHHHHHHHHTCSEEEEESSHHHH
T ss_pred             ECCCCEEEEccccHHHHhhhc-CcHHHHHHHHHHHHhCCCcccc---c--chHHHHHHHHhhhhccccceeeeeccccch
Confidence            468999999876   333444 3999999999999887755322   2  356789999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy16850        125 NDSTLFTL  132 (174)
Q Consensus       125 N~~~i~aL  132 (174)
                      |-..+...
T Consensus       109 ~~~a~k~a  116 (404)
T d1z7da1         109 NETAYKLC  116 (404)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888654

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=0.0002  Score=59.86  Aligned_cols=130  Identities=15%  Similarity=0.057  Sum_probs=84.9

Q ss_pred             HHhCCCCcee-eecccccCCCCceee-ecCCeeEEEecc---CcccCCCCCccchHHHHHHHHHcCCCccccccccCCch
Q psy16850         23 KRDHSYRVFK-KVNRLATNFPAAYEY-TDSEKEVTVYCS---NDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSL   97 (174)
Q Consensus        23 ~~~g~~r~~~-~~~~~~~~~~~~~~~-~~~g~~~inf~S---ndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~   97 (174)
                      ...|.|..++ ++.+..+     .++ ..+|+++|+|.|   +.-||- .||+|.+|+.+++++....+   +.+  ..+
T Consensus        11 ~~~~~y~~~p~~i~ra~G-----~~l~d~dG~~ylD~~~g~~~~~lGh-~hp~v~~a~~~~~~~~~~~~---~~~--~~~   79 (387)
T d1vefa1          11 LDSGVYNKHDLLIVRGQG-----ARVWDAEGNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMP---QTL--PTP   79 (387)
T ss_dssp             HBCSCSCCCSSCEEEEEB-----TEEEETTSCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC---TTS--CCH
T ss_pred             ccCCCCCCCCceEEEeEc-----CEEEECCCCEEEEcchhHHhhhhcC-CcHHHHHHHHHHHHhhcccc---ccc--CCc
Confidence            3456666543 3444332     233 378999999966   233666 49999999999998844221   222  246


Q ss_pred             HHHHHHHHHHHHhCCC--cEEEecchhHHHHHHHHHhcc------------cCCCCe------------------eEEEE
Q psy16850         98 FHEKLEEDVARLHQKE--AGLVFTSCYVANDSTLFTLGK------------MIPYFT------------------ELIYF  145 (174)
Q Consensus        98 ~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~i~aL~~------------~~~g~~------------------~s~~~  145 (174)
                      ...+|.+++.+.....  .+.+.+||..||-..|..--.            ...|..                  ....+
T Consensus        80 ~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~  159 (387)
T d1vefa1          80 MRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPV  159 (387)
T ss_dssp             HHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCE
T ss_pred             hHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCc
Confidence            6677777777776554  678889999999999876321            011110                  11256


Q ss_pred             EEecCCCHHHHHHHHHHh
Q psy16850        146 YRFLANTTDIIKEASKEL  163 (174)
Q Consensus       146 ~~f~HNd~~~Le~~L~~~  163 (174)
                      ..+++||.+.|++++.+.
T Consensus       160 ~~~p~~d~~~l~~~~~~~  177 (387)
T d1vefa1         160 EFIPYNDVEALKRAVDEE  177 (387)
T ss_dssp             EEECTTCHHHHHHHCCTT
T ss_pred             eEeCCCCHHHHHHhcCCC
Confidence            789999999999988654

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=97.22  E-value=0.00055  Score=57.99  Aligned_cols=66  Identities=27%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+....||+.||++-|.+.|++|+||.+|..+++.++++  +|.++.                     +++..+...|++
T Consensus        62 nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~--~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~  139 (397)
T d1y4ia1          62 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ--QGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPE  139 (397)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHH
T ss_pred             CHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccC--CCCeeeeecccccccchhhhcccCCCceEeeccCCCCHH
Confidence            478999999999999999999999999999999999977  566554                     266778888999


Q ss_pred             HHHHHHHHh
Q psy16850        155 IIKEASKEL  163 (174)
Q Consensus       155 ~Le~~L~~~  163 (174)
                      .+++.++..
T Consensus       140 ~~~~~i~~~  148 (397)
T d1y4ia1         140 EIRAAMRPE  148 (397)
T ss_dssp             HHHHHCCTT
T ss_pred             HHHHhcCCC
Confidence            998887643

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=97.18  E-value=0.00025  Score=59.48  Aligned_cols=72  Identities=11%  Similarity=-0.037  Sum_probs=52.7

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHH
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLF  130 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~  130 (174)
                      +..+|+|.|-.+-+     .+.++...++.. |      ...+|..+...+||+.+|+++|.|.+++++||.+||..++.
T Consensus        41 ~~~~id~~sd~~t~-----~~~~~~~a~~~~-g------d~~y~~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~  108 (465)
T d1ax4a_          41 SAVYIDLLTDSGTN-----AMSDHQWAAMIT-G------DEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFP  108 (465)
T ss_dssp             GGCSEECSCSSSCC-----CEEHHHHHHHHT-C------CCCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHH
T ss_pred             cCeeeecccccchh-----hhhHHHHHHHhh-h------hhhhccChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHH
Confidence            45578887755532     344444444331 2      12345567788999999999999999999999999999999


Q ss_pred             Hhcc
Q psy16850        131 TLGK  134 (174)
Q Consensus       131 aL~~  134 (174)
                      ++.+
T Consensus       109 ~~~~  112 (465)
T d1ax4a_         109 VLLK  112 (465)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9975

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=97.08  E-value=0.0013  Score=55.08  Aligned_cols=78  Identities=18%  Similarity=0.252  Sum_probs=61.8

Q ss_pred             ecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850         48 TDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY  122 (174)
Q Consensus        48 ~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy  122 (174)
                      ..+|+++|+|.|.   .=||= .||+|.+|+.+.+++++...  +..   .+....+|-++|++..  +.+.+.+++||-
T Consensus        37 D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~--~~~---~~~~~~~la~~L~~~~~~~~~~v~f~~sGs  110 (431)
T d1zoda1          37 DADGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLF--SEM---LSRPVVDLATRLANITPPGLDRALLLSTGA  110 (431)
T ss_dssp             CTTCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC--TTC---CCHHHHHHHHHHHHHSCTTCCEEEEESCHH
T ss_pred             ECCCCEEEEcccCHHhhhhcC-CCHHHHHHHHHHHhhccccc--ccc---ccHHHHHHHHHHHHhCCcccceeeeccccc
Confidence            3689999999873   34665 48999999999999977422  222   3467788999999987  678899999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-..|..
T Consensus       111 eA~e~Alk~  119 (431)
T d1zoda1         111 ESNEAAIRM  119 (431)
T ss_dssp             HHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            999999885

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0019  Score=54.22  Aligned_cols=68  Identities=10%  Similarity=0.004  Sum_probs=57.4

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+....||+.||++-|.+.|++|+||..|-.+++.+|++  +|.++.                     ..+..+...|.+
T Consensus        49 nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~--~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~  126 (384)
T d1cs1a_          49 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQ  126 (384)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhccc--ccceecccccccchhhhhhhhhhcccccccccccCCCHH
Confidence            488999999999999999999999999999999999987  565543                     255677889999


Q ss_pred             HHHHHHHHhcc
Q psy16850        155 IIKEASKELQE  165 (174)
Q Consensus       155 ~Le~~L~~~~~  165 (174)
                      .++..++....
T Consensus       127 ~~~~~~~~~t~  137 (384)
T d1cs1a_         127 ALRAALAEKPK  137 (384)
T ss_dssp             HHHHHHHTCCS
T ss_pred             HHHhhcccccc
Confidence            99988876554

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=96.94  E-value=0.00071  Score=55.77  Aligned_cols=63  Identities=19%  Similarity=0.065  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHHHHHHH
Q psy16850        101 KLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTDIIKEA  159 (174)
Q Consensus       101 ~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~~Le~~  159 (174)
                      .||+.||++-|.|.|++|+||..|-.+++-+|++  +|.++.                     +.+..+...|.+.+++.
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~--~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~   79 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLK--AGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKH   79 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHT
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhh
Confidence            5999999999999999999999998887778766  666554                     24566667777777777


Q ss_pred             HHHhcc
Q psy16850        160 SKELQE  165 (174)
Q Consensus       160 L~~~~~  165 (174)
                      ++....
T Consensus        80 i~~~t~   85 (331)
T d1pffa_          80 LKPNTR   85 (331)
T ss_dssp             CCTTEE
T ss_pred             cccccc
Confidence            655443

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=96.93  E-value=0.0014  Score=55.36  Aligned_cols=66  Identities=27%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+....||+.||+.-|.+.|++|+||..|-.+++-++++  +|.++.                     +.+..+.-.|++
T Consensus        58 nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~--~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~  135 (392)
T d1gc0a_          58 NPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLR--PGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQ  135 (392)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHH
T ss_pred             ChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhcc--CCCeeecccccchhhhhhhhhhhccCCcccccCCccCHH
Confidence            478999999999999999999999999999999999976  566554                     244555556777


Q ss_pred             HHHHHHHHh
Q psy16850        155 IIKEASKEL  163 (174)
Q Consensus       155 ~Le~~L~~~  163 (174)
                      .+++.++..
T Consensus       136 ~~~~ai~~~  144 (392)
T d1gc0a_         136 ALEAAMTPA  144 (392)
T ss_dssp             HHHHHCCTT
T ss_pred             HHHHhCCCC
Confidence            777666543

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0017  Score=55.37  Aligned_cols=105  Identities=25%  Similarity=0.234  Sum_probs=76.9

Q ss_pred             ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcEEE-ecchhHHHHHHHHH
Q psy16850         58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAGLV-FTSCYVANDSTLFT  131 (174)
Q Consensus        58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~al~-f~sGy~aN~~~i~a  131 (174)
                      +|-||.    +|.|+++.-..+ .+|.-|-.|-|...|+ ....++|.    ...++||.+-|=+ ..||..||++++.+
T Consensus        33 aSEN~~----S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~-~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~A  107 (416)
T d1dfoa_          33 ASENYT----SPRVMQAQGSQLTNKYAEGYPGKRYYGGC-EYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTA  107 (416)
T ss_dssp             TTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHH
T ss_pred             cCcccC----CHHHHHHhcCcccCcccCCCCCCcccCCC-hhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHH
Confidence            466775    366777765554 6788899998887764 45566663    4467899988855 89999999999999


Q ss_pred             hcccCCCCeeEE----------------------EEEEec--CC---CHHHHHHHHHHhcccccc
Q psy16850        132 LGKMIPYFTELI----------------------YFYRFL--AN---TTDIIKEASKELQEDMID  169 (174)
Q Consensus       132 L~~~~~g~~~s~----------------------~~~~f~--HN---d~~~Le~~L~~~~~~~~~  169 (174)
                      |.+  ||+++.+                      .++.|.  ++   |+|.|+++.++..|..|-
T Consensus       108 ll~--pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi  170 (416)
T d1dfoa_         108 LLE--PGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMII  170 (416)
T ss_dssp             HCC--TTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEE
T ss_pred             hcC--CCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEE
Confidence            987  5655431                      334443  33   999999999999987663

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=96.86  E-value=0.00081  Score=56.19  Aligned_cols=47  Identities=13%  Similarity=-0.113  Sum_probs=39.3

Q ss_pred             cCCchHHHHHHHHHHHHhCCCcEEEecch-hHHHHHHHHHhcccCCCCee
Q psy16850         93 SGNSLFHEKLEEDVARLHQKEAGLVFTSC-YVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus        93 ~G~~~~~~~LE~~lA~~~g~e~al~f~sG-y~aN~~~i~aL~~~~~g~~~  141 (174)
                      ......+.++|+.+|+++|.+.|+++++| ..+|+++|.++++  ||+.+
T Consensus        62 ~~~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~--~gd~V  109 (462)
T d1c4ka2          62 LIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVS--NGDLV  109 (462)
T ss_dssp             TTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCC--TTCEE
T ss_pred             cCCCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcC--CCCeE
Confidence            34557899999999999999999999999 5678999999987  55443

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0009  Score=56.41  Aligned_cols=66  Identities=14%  Similarity=0.056  Sum_probs=52.9

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+....||+.||++-|.+.|++|+||..|-.+++-++++  +|.++.                     +.+..+...|.+
T Consensus        57 nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~--~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~  134 (391)
T d1cl1a_          57 TLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIE--QGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGA  134 (391)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGG
T ss_pred             ChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccC--CCCeEEEecccccchhhhhhhcccccccccccccCcccc
Confidence            588999999999999999999999999999999888876  455543                     255666677777


Q ss_pred             HHHHHHHHh
Q psy16850        155 IIKEASKEL  163 (174)
Q Consensus       155 ~Le~~L~~~  163 (174)
                      ++++.++..
T Consensus       135 ~~~~~i~~~  143 (391)
T d1cl1a_         135 DIVKHLQPN  143 (391)
T ss_dssp             GGGGTCCTT
T ss_pred             ccccccccc
Confidence            777665543

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=96.75  E-value=0.002  Score=54.26  Aligned_cols=69  Identities=20%  Similarity=0.047  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+....||+.||++-|.+.|++|+||.+|-.+++-++.+  +|.++.                     +.+..+.-.|.+
T Consensus        58 nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~~--~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~  135 (394)
T d1e5ea_          58 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILK--AGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPG  135 (394)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTT
T ss_pred             CHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhcc--cccccccccceeehhhHhHHHHhhccceeeeccCCCCHH
Confidence            588999999999999999999999999999998888876  555543                     256677788888


Q ss_pred             HHHHHHHHhccc
Q psy16850        155 IIKEASKELQED  166 (174)
Q Consensus       155 ~Le~~L~~~~~~  166 (174)
                      .+++.++....-
T Consensus       136 ~~~~~i~~~t~l  147 (394)
T d1e5ea_         136 EVKKHMKPNTKI  147 (394)
T ss_dssp             HHHHHCCTTEEE
T ss_pred             HHHHhhcccccE
Confidence            888877665543

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.74  E-value=0.0022  Score=53.79  Aligned_cols=66  Identities=20%  Similarity=0.134  Sum_probs=49.8

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+..+.||+.||++-|.++|++|+||..|-. .+-++++  +|.++.                     +.+..+.-+|++
T Consensus        48 nPt~~~le~~la~LE~~~~a~~fsSGMaAis-all~ll~--~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~  124 (380)
T d1ibja_          48 NPTRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLIK--NGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLD  124 (380)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHH-HHHTTSC--TTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHH
T ss_pred             ChHHHHHHHHHHHHcCCceEEehhhHHHHHH-HHHHhhC--CCCEEEEEecccccccchhhhhhccccccccccCcchHH
Confidence            5778999999999999999999999998854 4445544  565554                     245566778888


Q ss_pred             HHHHHHHHhc
Q psy16850        155 IIKEASKELQ  164 (174)
Q Consensus       155 ~Le~~L~~~~  164 (174)
                      .+++.++...
T Consensus       125 ~~~~ai~~~t  134 (380)
T d1ibja_         125 EVAAAIGPQT  134 (380)
T ss_dssp             HHHHHCCSSE
T ss_pred             HHHHHhccCc
Confidence            8887765443

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.71  E-value=0.0044  Score=52.25  Aligned_cols=65  Identities=18%  Similarity=0.089  Sum_probs=51.0

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE---------------------EEEEEecCCCHH
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL---------------------IYFYRFLANTTD  154 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s---------------------~~~~~f~HNd~~  154 (174)
                      .+....||+.||++-|.+.|++|+||..|..+++-+++.  +|.++.                     +.+..+...|.+
T Consensus        66 nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~--~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~  143 (398)
T d1qgna_          66 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVG  143 (398)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHH
T ss_pred             ChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhccc--ccccccccccccchhhhhhcccccccccccccccccchh
Confidence            478999999999999999999999999999999999876  565554                     245566666666


Q ss_pred             HHHHHHHH
Q psy16850        155 IIKEASKE  162 (174)
Q Consensus       155 ~Le~~L~~  162 (174)
                      ..+..+..
T Consensus       144 ~~~~~~~~  151 (398)
T d1qgna_         144 ALELALNQ  151 (398)
T ss_dssp             HHHHHHHH
T ss_pred             hhhhhhcc
Confidence            66654443

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.55  E-value=0.00049  Score=58.66  Aligned_cols=85  Identities=14%  Similarity=0.096  Sum_probs=53.9

Q ss_pred             eecCCeeEEEeccC-cccCCCC-CccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchh
Q psy16850         47 YTDSEKEVTVYCSN-DYLGMSC-HPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCY  122 (174)
Q Consensus        47 ~~~~g~~~inf~Sn-dYLGL~~-~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy  122 (174)
                      +..+|+++|+|.|+ --+.|.+ ||+|.+|+.+.+++.+......-...-...+.++|.+.|.+..  +.+.+++++||-
T Consensus        48 ~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGs  127 (461)
T d1ohwa_          48 VDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGS  127 (461)
T ss_dssp             EBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHH
T ss_pred             EECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchh
Confidence            34789999999653 2333443 9999999988766543211111111112344566666666554  456799999999


Q ss_pred             HHHHHHHHH
Q psy16850        123 VANDSTLFT  131 (174)
Q Consensus       123 ~aN~~~i~a  131 (174)
                      .||-+.|..
T Consensus       128 eAve~Aik~  136 (461)
T d1ohwa_         128 CSNENAFKT  136 (461)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhHHHHHH
Confidence            999988764

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=96.47  E-value=0.0026  Score=51.66  Aligned_cols=38  Identities=18%  Similarity=0.089  Sum_probs=35.7

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~  133 (174)
                      -+..+++|++||+++|.+.|++++||..|+..++.+|.
T Consensus        30 G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~   67 (371)
T d2fnua1          30 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFS   67 (371)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhc
Confidence            36899999999999999999999999999999999985

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=96.45  E-value=0.0025  Score=52.42  Aligned_cols=57  Identities=21%  Similarity=0.180  Sum_probs=43.9

Q ss_pred             cchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhc
Q psy16850         70 KVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        70 ~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~  133 (174)
                      +.++++.++|+.   |    +.....-+..+++|+++|+++|.+.|++++||..|+..++.+|.
T Consensus        14 ~~~~~~~~~l~~---g----~~~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~   70 (384)
T d1b9ha_          14 AERNGLVRALEQ---G----QWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG   70 (384)
T ss_dssp             HHHHHHHHHHHT---S----CCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc---C----CeeecCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC
Confidence            446667776653   1    21112236799999999999999999999999999999999873

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.37  E-value=0.0027  Score=51.29  Aligned_cols=61  Identities=18%  Similarity=0.142  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCee
Q psy16850         72 KSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus        72 ~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~  141 (174)
                      ++++.++++.-        -+++.-+..++||+++|+++|.+.|++++||..|+..++.+|. .-+|+.+
T Consensus         4 ~~~~~~~l~~~--------~~~~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~-~~~gdeV   64 (374)
T d1o69a_           4 LKYIEEVFKSN--------YIAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG-VKQDDIV   64 (374)
T ss_dssp             HHHHHHHHHHT--------TTSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT-CCTTCEE
T ss_pred             HHHHHHHHhcC--------CcCCCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC-CCCcCEE
Confidence            46667776531        2222237799999999999999999999999999999999883 2245544

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=96.35  E-value=0.01  Score=47.93  Aligned_cols=82  Identities=18%  Similarity=0.127  Sum_probs=53.1

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecchhHH
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSCYVA  124 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sGy~a  124 (174)
                      .+|+++|+|+.+| -.|...|+|++++.++++.-..+.+.+   .|..++.+.+-+.+.+..|    .+..++++.+..+
T Consensus        28 ~~G~~vi~l~~g~-p~~~~p~~i~~a~~~~~~~~~~~Y~~~---~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~a  103 (382)
T d1b5pa_          28 RQGVDLVALTAGE-PDFDTPEHVKEAARRALAQGKTKYAPP---AGIPELREALAEKFRRENGLSVTPEETIVTVGGSQA  103 (382)
T ss_dssp             HTTCCCEECCCSS-CSSCCCHHHHHHHHHHHHTTCCSCCCT---TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHH
T ss_pred             hCCCCeEECCCCC-CCCCCCHHHHHHHHHHHhcCCcCCCCC---CCCHHHHHHHHhhhhhhcccccccccceecCCHHHH
Confidence            3567789999887 467778899999999887522232211   2444444444433333333    3566777666888


Q ss_pred             HHHHHHHhcc
Q psy16850        125 NDSTLFTLGK  134 (174)
Q Consensus       125 N~~~i~aL~~  134 (174)
                      -..++.+|++
T Consensus       104 l~~~~~~l~~  113 (382)
T d1b5pa_         104 LFNLFQAILD  113 (382)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            8888889976

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.95  E-value=0.01  Score=50.13  Aligned_cols=104  Identities=23%  Similarity=0.246  Sum_probs=79.0

Q ss_pred             ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHH----HHHHHhCCCcE-EEecchhHHHHHHHHH
Q psy16850         58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEE----DVARLHQKEAG-LVFTSCYVANDSTLFT  131 (174)
Q Consensus        58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~----~lA~~~g~e~a-l~f~sGy~aN~~~i~a  131 (174)
                      +|.||..    |.|+++.-..+ .+|--|..|-|-..| .....++|.    ...++|+.+-| +=..||-.||++++.+
T Consensus        30 aSEN~~S----~~v~~a~~S~l~nkyaeG~pg~ryy~G-~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~a  104 (405)
T d1kl1a_          30 ASENFVS----RAVMEAQGSVLTNKYAEGYPGRRYYGG-CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFT  104 (405)
T ss_dssp             TTCCCCC----HHHHHHHTSGGGGCCCCEETTEESSSC-CHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHH
T ss_pred             ccCCcCC----HHHHHHhcCcccCcCcCCCCCccccCC-chhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHH
Confidence            5777764    77777776665 678888888888665 667888884    44788999887 5578999999999999


Q ss_pred             hcccCCCCeeEE----------------------EEEEec------CCCHHHHHHHHHHhccccc
Q psy16850        132 LGKMIPYFTELI----------------------YFYRFL------ANTTDIIKEASKELQEDMI  168 (174)
Q Consensus       132 L~~~~~g~~~s~----------------------~~~~f~------HNd~~~Le~~L~~~~~~~~  168 (174)
                      |.+  ||+++.+                      .++.|+      -=|++.|++++++..|..|
T Consensus       105 ll~--pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklI  167 (405)
T d1kl1a_         105 VLE--HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLI  167 (405)
T ss_dssp             HCC--TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEE
T ss_pred             hcC--CCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceE
Confidence            987  6665431                      344443      3588999999999998766

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.018  Score=48.19  Aligned_cols=81  Identities=11%  Similarity=0.025  Sum_probs=57.9

Q ss_pred             ecCCeeEEEeccCcc-cCCC-CCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh--CCCcEEEecchhH
Q psy16850         48 TDSEKEVTVYCSNDY-LGMS-CHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH--QKEAGLVFTSCYV  123 (174)
Q Consensus        48 ~~~g~~~inf~SndY-LGL~-~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~--g~e~al~f~sGy~  123 (174)
                      ..+|+++|+|.|+.. +.|. .||+|.+|+.+.+++..-. ..++.   .+....+|.+++.+..  +.+.+.+.+||-.
T Consensus        39 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~-~~~~~---~~~~~~~l~~~l~~~~~~~~~~v~f~~sGse  114 (429)
T d1s0aa_          39 LSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV-MFGGI---THAPAIELCRKLVAMTPQPLECVFLADSGSV  114 (429)
T ss_dssp             ETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCC-CCSSE---ECHHHHHHHHHHHHHSCTTCCEEEEESSHHH
T ss_pred             ECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCc-ccCCc---cchHHHHHHHHHHhhhccCcceeeecccccc
Confidence            468999999988644 3344 3999999999999886522 22222   2355667777777776  4567888999999


Q ss_pred             HHHHHHHHh
Q psy16850        124 ANDSTLFTL  132 (174)
Q Consensus       124 aN~~~i~aL  132 (174)
                      ||-..+...
T Consensus       115 A~e~A~k~a  123 (429)
T d1s0aa_         115 AVEVAMKMA  123 (429)
T ss_dssp             HHHHHHHHH
T ss_pred             chhhhhhhh
Confidence            998887644

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.015  Score=48.32  Aligned_cols=80  Identities=19%  Similarity=0.096  Sum_probs=59.7

Q ss_pred             eecCCeeEEEeccC---cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---CCcEEEecc
Q psy16850         47 YTDSEKEVTVYCSN---DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---KEAGLVFTS  120 (174)
Q Consensus        47 ~~~~g~~~inf~Sn---dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---~e~al~f~s  120 (174)
                      +..+|+++|||++.   .-||- .||+|.+|+.+.+++++..+..+    ..++...+|-+.|.+.+.   .+.+...+|
T Consensus        35 ~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~~~~~~~----~~~~~~~~la~~l~~~~p~~~~~~v~f~~s  109 (425)
T d1sffa_          35 WDVEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQV----LAYEPYLELCEIMNQKVPGDFAKKTLLVTT  109 (425)
T ss_dssp             EETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCTTT----EECHHHHHHHHHHHHHSSCSSCEEEEEESS
T ss_pred             EeCCCCEEEEcCcCHHhhcccC-CcHHHHHHHHHHHhhcCCccccc----ccCcHHHHHHHHHHhhhhhcccceeeeecc
Confidence            34789999999884   33454 49999999999998876443222    235677888888999885   345677799


Q ss_pred             hhHHHHHHHHH
Q psy16850        121 CYVANDSTLFT  131 (174)
Q Consensus       121 Gy~aN~~~i~a  131 (174)
                      |-.||-..|..
T Consensus       110 GseA~e~Alk~  120 (425)
T d1sffa_         110 GSEAVENAVKI  120 (425)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccchhhhHHHH
Confidence            99999988775

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.67  E-value=0.029  Score=44.87  Aligned_cols=104  Identities=19%  Similarity=0.041  Sum_probs=63.6

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC---------CCcEEEecch
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ---------KEAGLVFTSC  121 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g---------~e~al~f~sG  121 (174)
                      .+.+|+|+.++ -++...|.|++++.++++.--.+       +|...=+.+|-+.||+|+.         .+..++.+.+
T Consensus        24 ~~dvi~l~~g~-p~~~~p~~v~~~~~~a~~~~~~~-------Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~   95 (388)
T d1gdea_          24 MKDVISLGIGE-PDFDTPQHIKEYAKEALDKGLTH-------YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGA   95 (388)
T ss_dssp             CTTCEECCCCS-CCSCCCHHHHHHHHHHHHTTCCS-------CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESST
T ss_pred             CCCeEECCCCC-CCCCCCHHHHHHHHHHHhcCccC-------CCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCc
Confidence            35589998875 47778899999999998751112       1222225666777777752         2334555555


Q ss_pred             hHHHHHHHHHhcccCCCCeeE-----------------EEEEEecC-------CCHHHHHHHHHHhc
Q psy16850        122 YVANDSTLFTLGKMIPYFTEL-----------------IYFYRFLA-------NTTDIIKEASKELQ  164 (174)
Q Consensus       122 y~aN~~~i~aL~~~~~g~~~s-----------------~~~~~f~H-------Nd~~~Le~~L~~~~  164 (174)
                      -.+-..++.+|++  ||....                 +.++.++.       -|+++|++.++...
T Consensus        96 ~~~l~~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~  160 (388)
T d1gdea_          96 NQAFLMGLSAFLK--DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT  160 (388)
T ss_dssp             THHHHHHHTTTCC--TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTE
T ss_pred             chHHHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCC
Confidence            5555666677766  555443                 24555553       27788887765443

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=95.59  E-value=0.0086  Score=50.75  Aligned_cols=45  Identities=24%  Similarity=0.101  Sum_probs=40.1

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHhcccCCCCeeE
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTLGKMIPYFTEL  142 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL~~~~~g~~~s  142 (174)
                      .+....||+.||++-|.+.|++|+||..|-.+++.+|++  +|.++.
T Consensus        57 nPT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l~~--~gd~il  101 (421)
T d2ctza1          57 NPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQ--AGDNIV  101 (421)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC--TTCEEE
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhhcc--ccccee
Confidence            478999999999999999999999999999889999877  566654

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0091  Score=50.09  Aligned_cols=37  Identities=32%  Similarity=0.396  Sum_probs=32.8

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEecchhHHHHHHHHHh
Q psy16850         96 SLFHEKLEEDVARLHQKEAGLVFTSCYVANDSTLFTL  132 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~al~f~sGy~aN~~~i~aL  132 (174)
                      .+..+.||+.||++-|.|.|++|+||.+|..+++..+
T Consensus        54 nPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l~~l   90 (393)
T d1n8pa_          54 NPNRENLERAVAALENAQYGLAFSSGSATTATILQSL   90 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHHhCCceEEEecCchhHHHhhhhcc
Confidence            4789999999999999999999999998887766554

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=95.51  E-value=0.066  Score=43.23  Aligned_cols=86  Identities=14%  Similarity=0.191  Sum_probs=54.4

Q ss_pred             cCCeeEEEeccCcccCCCCCccchHHHHHHHHHcCC-CccccccccCCchHHHHHHHHHHHHhCCC---cEEEecch-hH
Q psy16850         49 DSEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGT-GAGGTRNISGNSLFHEKLEEDVARLHQKE---AGLVFTSC-YV  123 (174)
Q Consensus        49 ~~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~-gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e---~al~f~sG-y~  123 (174)
                      .+|+++|||+.+| -++...|.++++++++++. |. +.+-   ..|...+.+.+-+.+.+..|..   +-+++++| -.
T Consensus        27 ~~g~~vi~l~~G~-p~~~~p~~v~~a~~~~~~~-~~~~Y~~---~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~  101 (388)
T d1j32a_          27 AEGIDVCSFSAGE-PDFNTPKHIVEAAKAALEQ-GKTRYGP---AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQ  101 (388)
T ss_dssp             TTTCCCEECCCSS-CSSCCCHHHHHHHHHHHHT-TCCSCCC---TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHH
T ss_pred             HCCCCeEECCCCC-CCCCCCHHHHHHHHHHHhc-CCCCCCC---CCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHH
Confidence            3577899999887 5777789999999998875 32 1111   1355555666555555555532   23555555 56


Q ss_pred             HHHHHHHHhcccCCCCee
Q psy16850        124 ANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus       124 aN~~~i~aL~~~~~g~~~  141 (174)
                      +-..++.++++  ||+.+
T Consensus       102 al~~~~~~~~~--~gd~V  117 (388)
T d1j32a_         102 SIFNLMLAMIE--PGDEV  117 (388)
T ss_dssp             HHHHHHHHHCC--TTCEE
T ss_pred             HHHHHHHHHhC--CCCEE
Confidence            66667778876  45443

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.23  E-value=0.055  Score=46.37  Aligned_cols=104  Identities=18%  Similarity=0.149  Sum_probs=76.7

Q ss_pred             ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHHHHH----HHHhCCC-----cEEEecchhHHHHH
Q psy16850         58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLEEDV----ARLHQKE-----AGLVFTSCYVANDS  127 (174)
Q Consensus        58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE~~l----A~~~g~e-----~al~f~sGy~aN~~  127 (174)
                      +|.||.    +|.|+++.-..+ .+|--|..|.|-..| .....++|...    .++||.+     .-+=-.||-.||++
T Consensus        38 aSEN~~----S~~v~~algS~l~nkYaeG~pg~Ryy~G-~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~a  112 (470)
T d1rv3a_          38 ASENFA----SRAVLEALGSCLNNKYSLGYPGQRYYGG-TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFA  112 (470)
T ss_dssp             TTCCCC----CHHHHHHHTSGGGTCCCCEETTEESSSC-CHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHH
T ss_pred             cCCCcC----CHHHHHHhcchhcccccCCCCCccccCC-chhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHH
Confidence            377775    566777765555 568888889887665 67889999666    8899876     23566799999999


Q ss_pred             HHHHhcccCCCCeeEE---------------------------EEEEec------CCCHHHHHHHHHHhccccc
Q psy16850        128 TLFTLGKMIPYFTELI---------------------------YFYRFL------ANTTDIIKEASKELQEDMI  168 (174)
Q Consensus       128 ~i~aL~~~~~g~~~s~---------------------------~~~~f~------HNd~~~Le~~L~~~~~~~~  168 (174)
                      ++.+|.+  ||+++.+                           .++.|+      .=|++.|+++.++..|..|
T Consensus       113 v~~all~--pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklI  184 (470)
T d1rv3a_         113 VYTALVE--PHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLI  184 (470)
T ss_dssp             HHHHHTC--TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEE
T ss_pred             HHHHhcC--CCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceE
Confidence            9999987  5554331                           234443      3389999999999988765

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=93.97  E-value=0.066  Score=42.46  Aligned_cols=72  Identities=19%  Similarity=-0.004  Sum_probs=52.9

Q ss_pred             EEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc--EEEecchhHHHHHHHHH
Q psy16850         54 VTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA--GLVFTSCYVANDSTLFT  131 (174)
Q Consensus        54 ~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f~sGy~aN~~~i~a  131 (174)
                      +|||+.++- ++...|.+++|+.+++++. .+       ++...=+.+|.++||++++.+.  .++.+.|-.++..++.+
T Consensus        27 ~I~ls~g~p-~~~~p~~i~~al~~~l~~~-~~-------Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~   97 (368)
T d1v2da_          27 AVNLGQGFP-SNPPPPFLLEAVRRALGRQ-DQ-------YAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS   97 (368)
T ss_dssp             CEECCCCSC-SSCCCHHHHHHHHHHTTTS-CS-------CCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             CEEecCCCC-CCCCCHHHHHHHHHHhhcc-cC-------CCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhc
Confidence            689987764 5667788999988877532 11       2222226789999999999654  58888888888889989


Q ss_pred             hcc
Q psy16850        132 LGK  134 (174)
Q Consensus       132 L~~  134 (174)
                      +++
T Consensus        98 l~~  100 (368)
T d1v2da_          98 LVG  100 (368)
T ss_dssp             HCC
T ss_pred             ccc
Confidence            876

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=93.57  E-value=0.029  Score=48.09  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=65.1

Q ss_pred             ccCcccCCCCCccchHHHHHHH-HHcCCCccccccccCCchHHHHHH----HHHHHHhCCCcE-----EEecchhHHHHH
Q psy16850         58 CSNDYLGMSCHPKVKSAVREAL-EKFGTGAGGTRNISGNSLFHEKLE----EDVARLHQKEAG-----LVFTSCYVANDS  127 (174)
Q Consensus        58 ~SndYLGL~~~p~v~~a~~~al-~~~G~gs~~Sr~~~G~~~~~~~LE----~~lA~~~g~e~a-----l~f~sGy~aN~~  127 (174)
                      +|.||.    +|.|+++.-..+ .+|--|.-|-|-..|. ....++|    +...++|+.+.|     +=.-||-.||++
T Consensus        34 aSEN~~----S~~v~~algS~l~nkYaeG~pg~Ryy~G~-~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~a  108 (463)
T d2a7va1          34 ASENFC----SRAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLA  108 (463)
T ss_dssp             TTCCCC----CHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHH
T ss_pred             ccCCcC----CHHHHHHhcchhcccccCCCCCccccCCc-hhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHH
Confidence            377775    566777766555 5788888888887764 4566666    447889999976     778899999999


Q ss_pred             HHHHhcccCCCCe-----------eE-------------E---EEEEecCC------CHHHHHHHHHHhcccccc
Q psy16850        128 TLFTLGKMIPYFT-----------EL-------------I---YFYRFLAN------TTDIIKEASKELQEDMID  169 (174)
Q Consensus       128 ~i~aL~~~~~g~~-----------~s-------------~---~~~~f~HN------d~~~Le~~L~~~~~~~~~  169 (174)
                      ++.+|.+  ||++           ++             .   .+..|.=+      |++.++++.++..|..|=
T Consensus       109 v~~all~--pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi  181 (463)
T d2a7va1         109 VYTALLQ--PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLII  181 (463)
T ss_dssp             HHHHHCC--SCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEE
T ss_pred             HHHHHcC--CCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEE
Confidence            9999987  4432           21             0   22333222      999999999999987663

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=92.47  E-value=0.062  Score=42.47  Aligned_cols=71  Identities=23%  Similarity=0.187  Sum_probs=45.3

Q ss_pred             eeEEEeccC-cccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCcE-EEecchhHH-HHHH
Q psy16850         52 KEVTVYCSN-DYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEAG-LVFTSCYVA-NDST  128 (174)
Q Consensus        52 ~~~inf~Sn-dYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~a-l~f~sGy~a-N~~~  128 (174)
                      ..+|+|++| |.+|.  .|.+++++.+++....      +  +.. .-+.+|++.||+++|.+.. |+.++|-.. ...+
T Consensus        22 ~~~idls~~~np~~~--p~~~~~a~~~~~~~~~------~--Yp~-~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~   90 (355)
T d1lc5a_          22 DQLLDFSANINPLGM--PVSVKRALIDNLDCIE------R--YPD-ADYFHLHQALARHHQVPASWILAGNGETESIFTV   90 (355)
T ss_dssp             GGSEECSSCCCTTCC--CHHHHHHHHHTGGGGG------S--CCC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred             hheEEccCCCCCCCC--CHHHHHHHHHHHHHhc------c--CCC-CChHHHHHHHHHHhCCCHHHEEecccHHHHHHHH
Confidence            358999998 88886  5778888887654321      1  111 1246899999999997764 444555444 3333


Q ss_pred             HHHhc
Q psy16850        129 LFTLG  133 (174)
Q Consensus       129 i~aL~  133 (174)
                      +.++.
T Consensus        91 ~~~~~   95 (355)
T d1lc5a_          91 ASGLK   95 (355)
T ss_dssp             HHHHC
T ss_pred             Hhhhc
Confidence            34443

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.81  E-value=0.86  Score=36.34  Aligned_cols=89  Identities=15%  Similarity=0.001  Sum_probs=55.2

Q ss_pred             ecCCeeEEEeccCc--ccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC----CcEEEecch
Q psy16850         48 TDSEKEVTVYCSND--YLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK----EAGLVFTSC  121 (174)
Q Consensus        48 ~~~g~~~inf~Snd--YLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~----e~al~f~sG  121 (174)
                      ..+|+++|+|+..|  ...|...+.+++++.++++.--.+.+.   ..|...+-+.+-+.+++.+|.    +..++.+.+
T Consensus        26 ~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~---~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~  102 (395)
T d1xi9a_          26 EKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGD---SEGLPELRKAIVEREKRKNGVDITPDDVRVTAAV  102 (395)
T ss_dssp             HHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred             HHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCC---CCCCHHHHHHHHHhhhhccccccccccccccccc
Confidence            34688899998765  236777788999999998652122211   134444444444444444453    356667777


Q ss_pred             hHHHHHHHHHhcccCCCCee
Q psy16850        122 YVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus       122 y~aN~~~i~aL~~~~~g~~~  141 (174)
                      -.+...++.++..  +|..+
T Consensus       103 ~~~~~~~~~~~~~--~Gd~v  120 (395)
T d1xi9a_         103 TEALQLIFGALLD--PGDEI  120 (395)
T ss_dssp             HHHHHHHHHHHCC--TTCEE
T ss_pred             chhhhhhhhhhcC--CCCEE
Confidence            7777778888865  45443

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=91.79  E-value=0.32  Score=38.28  Aligned_cols=81  Identities=11%  Similarity=0.042  Sum_probs=49.6

Q ss_pred             CCeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhC----CCcEEEecchhHHH
Q psy16850         50 SEKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQ----KEAGLVFTSCYVAN  125 (174)
Q Consensus        50 ~g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g----~e~al~f~sGy~aN  125 (174)
                      +|+++|||+..| -+|...+.+++++.++++.--.+.+   ...|...+.+.+-+.+....|    .+..++.+.|-.+-
T Consensus        26 ~G~~vI~l~~G~-p~~~~p~~i~~~~~~~~~~~~~~Y~---~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al  101 (375)
T d1o4sa_          26 KGEDVINLTAGE-PDFPTPEPVVEEAVRFLQKGEVKYT---DPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQAL  101 (375)
T ss_dssp             TTCCCEECCCSS-CSSCCCHHHHHHHHHHHTTCCCCCC---CTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHH
T ss_pred             CCCCeEECCCcC-CCCCCCHHHHHHHHHHHhcCCcCCC---CCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHH
Confidence            466788888764 3455677888888887754111211   122545555554444444433    45567777777777


Q ss_pred             HHHHHHhcc
Q psy16850        126 DSTLFTLGK  134 (174)
Q Consensus       126 ~~~i~aL~~  134 (174)
                      ..++.+|++
T Consensus       102 ~~~~~~l~~  110 (375)
T d1o4sa_         102 FNAFMALLD  110 (375)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHhC
Confidence            788888876

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=90.76  E-value=0.23  Score=39.77  Aligned_cols=74  Identities=15%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             CeeEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHh----C----CCcEEEecchh
Q psy16850         51 EKEVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLH----Q----KEAGLVFTSCY  122 (174)
Q Consensus        51 g~~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~----g----~e~al~f~sGy  122 (174)
                      |+++|+|+-=|- .|...|.|++|+.++++. |.        .|+.....+|.+.||+|+    |    .+..++.+.+-
T Consensus        30 g~~vi~l~~g~p-df~~p~~v~~al~~~~~~-~~--------~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~   99 (394)
T d1c7na_          30 GNEVVPLSVADM-EFKNPPELIEGLKKYLDE-TV--------LGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVV   99 (394)
T ss_dssp             CTTCCCCCSSSC-SSCCCHHHHHHHHHHHHH-CC--------CSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred             CCCeEEccCCCC-CCCCCHHHHHHHHHHHhC-CC--------cCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccch
Confidence            456777765442 577789999999999875 31        122222357888888886    3    34567777777


Q ss_pred             HHHHHHHHHhcc
Q psy16850        123 VANDSTLFTLGK  134 (174)
Q Consensus       123 ~aN~~~i~aL~~  134 (174)
                      .+-..++.++++
T Consensus       100 ~al~~~~~~~~~  111 (394)
T d1c7na_         100 PAVFNAVREFTK  111 (394)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             hhhhhhhccccc
Confidence            777778888876

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=89.99  E-value=0.14  Score=40.57  Aligned_cols=73  Identities=12%  Similarity=0.122  Sum_probs=44.9

Q ss_pred             cccCCCCCcc-chHHHHHHHHHcC-CCccccccccCCchHHHHHHHHHHHHhCCC--cEEEecchhHHHHHHHHHhc
Q psy16850         61 DYLGMSCHPK-VKSAVREALEKFG-TGAGGTRNISGNSLFHEKLEEDVARLHQKE--AGLVFTSCYVANDSTLFTLG  133 (174)
Q Consensus        61 dYLGL~~~p~-v~~a~~~al~~~G-~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e--~al~f~sGy~aN~~~i~aL~  133 (174)
                      ||-|.+.-|+ |++++.+.++.+. .|......-.....+.+++.+.||+++|.+  ..++.++|..++..++.++.
T Consensus        12 d~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~   88 (381)
T d1elua_          12 NFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD   88 (381)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC
T ss_pred             eCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhh
Confidence            3556777776 7788888776543 122111111112356778889999999964  34556666777766776663

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=89.57  E-value=0.75  Score=36.85  Aligned_cols=87  Identities=13%  Similarity=-0.057  Sum_probs=52.8

Q ss_pred             eEEEeccCcccCCCCCccchHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCC-----CcEEEecchhHHHHH
Q psy16850         53 EVTVYCSNDYLGMSCHPKVKSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQK-----EAGLVFTSCYVANDS  127 (174)
Q Consensus        53 ~~inf~SndYLGL~~~p~v~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~-----e~al~f~sGy~aN~~  127 (174)
                      .+|||+.-+ -.+...+.+++++.++++....+..+=....|..++.+.+.+.+++.+|.     +..++.+.+-.|-..
T Consensus        27 ~~I~L~~G~-Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~  105 (418)
T d2r5ea1          27 KPLNLGQGF-PDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYA  105 (418)
T ss_dssp             CCEECSSSC-CSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred             CCEEccCCC-CCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhh
Confidence            457777543 23444566889988888654333222223456667777777777777663     335555555667777


Q ss_pred             HHHHhcccCCCCeeE
Q psy16850        128 TLFTLGKMIPYFTEL  142 (174)
Q Consensus       128 ~i~aL~~~~~g~~~s  142 (174)
                      ++.++++  +|....
T Consensus       106 ~~~~l~~--~gd~vl  118 (418)
T d2r5ea1         106 TIQGHVD--EGDEVI  118 (418)
T ss_dssp             HHHHHCC--TTCEEE
T ss_pred             hhhhccc--ccccee
Confidence            7778876  555443

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=84.75  E-value=3.5  Score=32.67  Aligned_cols=62  Identities=11%  Similarity=-0.125  Sum_probs=39.4

Q ss_pred             HHHHHHHhCCCcE--EEecchhHHHHHHHHHhcccCCC--------CeeE---------EEEEE--------ecCCCHHH
Q psy16850        103 EEDVARLHQKEAG--LVFTSCYVANDSTLFTLGKMIPY--------FTEL---------IYFYR--------FLANTTDI  155 (174)
Q Consensus       103 E~~lA~~~g~e~a--l~f~sGy~aN~~~i~aL~~~~~g--------~~~s---------~~~~~--------f~HNd~~~  155 (174)
                      ...+++.+|.+.+  +++++|.+++.+++.++....++        +|.|         +..+.        .-+.|+++
T Consensus       119 ~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~  198 (434)
T d2z67a1         119 LESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVED  198 (434)
T ss_dssp             HHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHH
T ss_pred             HHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHH
Confidence            3557788887665  55778888888888887531111        1221         11111        12789999


Q ss_pred             HHHHHHHhc
Q psy16850        156 IKEASKELQ  164 (174)
Q Consensus       156 Le~~L~~~~  164 (174)
                      ||+.+++..
T Consensus       199 l~~~i~~~~  207 (434)
T d2z67a1         199 IENAIKKEI  207 (434)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            999999854

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=83.95  E-value=0.86  Score=35.25  Aligned_cols=65  Identities=14%  Similarity=0.077  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHcCCCccccccccCCchHHHHHHHHHHHHhCCCc--EEEe-cchhHHHHHHHHHhcccCCCCeeE
Q psy16850         72 KSAVREALEKFGTGAGGTRNISGNSLFHEKLEEDVARLHQKEA--GLVF-TSCYVANDSTLFTLGKMIPYFTEL  142 (174)
Q Consensus        72 ~~a~~~al~~~G~gs~~Sr~~~G~~~~~~~LE~~lA~~~g~e~--al~f-~sGy~aN~~~i~aL~~~~~g~~~s  142 (174)
                      -+.+++++..+..+.-+ .-   ..++.+++.+.|++++|.++  +++| ++|..+|-+++..+..  ++.+..
T Consensus        30 ~~~Vl~am~~~~~~hr~-~e---f~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~--~~~~~~   97 (377)
T d1vjoa_          30 HPSVLQAMNVSPVGHLD-PA---FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE--PGDVVL   97 (377)
T ss_dssp             CHHHHHHHSSCCCCTTS-HH---HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--TTCEEE
T ss_pred             CHHHHHHhCcCCCCCCC-HH---HHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccc--cccccc
Confidence            34445555444444311 11   24789999999999999753  7777 5579999999999876  444443

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=81.64  E-value=1.4  Score=34.13  Aligned_cols=72  Identities=10%  Similarity=0.023  Sum_probs=40.8

Q ss_pred             CccchHHHHHHHHHcCCCccccccccC-----CchHHHHHHHHHHHHhCCCc--EEEe-cc-hhHHHHHHHHHhcccCCC
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISG-----NSLFHEKLEEDVARLHQKEA--GLVF-TS-CYVANDSTLFTLGKMIPY  138 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G-----~~~~~~~LE~~lA~~~g~e~--al~f-~s-Gy~aN~~~i~aL~~~~~g  138 (174)
                      .++|++++.+.+..|+ +++.|-+-.+     ...++++..+.|+++++.++  -++| ++ |-.++.+++..+.+  ++
T Consensus        15 p~~V~eam~~~~~~~~-~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~--~~   91 (361)
T d2c0ra1          15 PLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK--EG   91 (361)
T ss_dssp             CHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC--TT
T ss_pred             CHHHHHHHHHHHhhhc-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcccc--CC
Confidence            4566777666554444 2222222222     24788999999999999976  3444 33 34455555556544  44


Q ss_pred             CeeE
Q psy16850        139 FTEL  142 (174)
Q Consensus       139 ~~~s  142 (174)
                      ....
T Consensus        92 ~~~l   95 (361)
T d2c0ra1          92 QTAN   95 (361)
T ss_dssp             CEEE
T ss_pred             CceE
Confidence            4433

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=81.23  E-value=1.4  Score=33.31  Aligned_cols=67  Identities=12%  Similarity=0.076  Sum_probs=41.2

Q ss_pred             CccchHHHHHHHHHcCCCccccccccC----CchHHHHHHHHHHHHhCCCc--EEEe--cchhHHHHHHHHHhcc
Q psy16850         68 HPKVKSAVREALEKFGTGAGGTRNISG----NSLFHEKLEEDVARLHQKEA--GLVF--TSCYVANDSTLFTLGK  134 (174)
Q Consensus        68 ~p~v~~a~~~al~~~G~gs~~Sr~~~G----~~~~~~~LE~~lA~~~g~e~--al~f--~sGy~aN~~~i~aL~~  134 (174)
                      .|+|++|+.+.+..|.....|-.-++-    -..++++..+.|+++++.++  .++|  +||-.+|.+++..+.+
T Consensus        13 p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~   87 (360)
T d1bjna_          13 PAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILG   87 (360)
T ss_dssp             CHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccc
Confidence            677888888777666532222111111    13678999999999999865  4554  4445556666666644

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.70  E-value=1.5  Score=34.07  Aligned_cols=44  Identities=18%  Similarity=0.164  Sum_probs=35.2

Q ss_pred             chHHHHHHHHHHHHhCCCc--EEEe-cchhHHHHHHHHHhcccCCCCee
Q psy16850         96 SLFHEKLEEDVARLHQKEA--GLVF-TSCYVANDSTLFTLGKMIPYFTE  141 (174)
Q Consensus        96 ~~~~~~LE~~lA~~~g~e~--al~f-~sGy~aN~~~i~aL~~~~~g~~~  141 (174)
                      ..+.+++++.|++++|.++  +++| +||..++-+++..+..  +|.+.
T Consensus        51 ~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~--~~~~~   97 (388)
T d1h0ca_          51 YQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLE--PGDSF   97 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCC--SSCCE
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhc--cCCce
Confidence            4679999999999999864  5666 4689999999999976  44443