Psyllid ID: psy17076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MKKKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHcEEcccEEEEcccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccccccHHHHHHHHHHHHHHHccHHHHccccccEEEEccccEccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mkkkfktgipmeaTSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE
Flexible Loop (DISEMBL)
mkkkfktgipmeatsnlvalkkDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE
Low Complexity Region (SEG)
MKKKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE
Disordered region (IsUnstruct)
****************LVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIV****
Disordered Region (DISOPRED)
*KKKFKTGIPMEATSN**ALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE
Disordered Region (DISEMBL)
********IPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE
Disordered Region (DISPRO)
***KFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRT**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q0GA42	951	Metal transporter CNNM1 O	yes	N/A	0.718	0.053	0.529	7e-10
Q9NRU3	951	Metal transporter CNNM1 O	yes	N/A	0.718	0.053	0.529	7e-10
Q5U2P1	875	Metal transporter CNNM2 O	no	N/A	0.718	0.058	0.529	1e-08
Q9H8M5	875	Metal transporter CNNM2 O	no	N/A	0.718	0.058	0.529	1e-08
Q3TWN3	875	Metal transporter CNNM2 O	no	N/A	0.718	0.058	0.529	1e-08
Q69ZF7	771	Metal transporter CNNM4 O	no	N/A	0.718	0.066	0.509	2e-08
Q6P4Q7	775	Metal transporter CNNM4 O	no	N/A	0.718	0.065	0.509	2e-08
P0C588	772	Metal transporter CNNM4 O	no	N/A	0.718	0.066	0.509	2e-08
A0JPA0	769	Metal transporter CNNM4 O	no	N/A	0.845	0.078	0.4	2e-08
Q12296	706	Protein MAM3 OS=Saccharom	yes	N/A	0.971	0.097	0.362	2e-06

>sp|Q0GA42|CNNM1_MOUSE Metal transporter CNNM1 OS=Mus musculus GN=Cnnm1 PE=1 SV=5

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L K+E+NII GALE+  K VEE++T L DC+ML  + +L+F  +SEI+R+G
Sbjct: 410 LVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSG 460

Probable metal transporter.
Mus musculus (taxid: 10090)

>sp|Q9NRU3|CNNM1_HUMAN Metal transporter CNNM1 OS=Homo sapiens GN=CNNM1 PE=2 SV=3

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L K+E+NII GALE+  K VEE++T L DC+ML  + +L+F  +SEI+R+G
Sbjct: 410 LVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSG 460

Probable metal transporter.

Homo sapiens (taxid: 9606)

>sp|Q5U2P1|CNNM2_RAT Metal transporter CNNM2 OS=Rattus norvegicus GN=Cnnm2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 38/51 (74%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L K+E+NII GALE+  K VE++MT L DC+M+  E IL+F  +SEI+ +G
Sbjct: 427 LVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESG 477

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Rattus norvegicus (taxid: 10116)

>sp|Q9H8M5|CNNM2_HUMAN Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 38/51 (74%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L K+E+NII GALE+  K VE++MT L DC+M+  E IL+F  +SEI+ +G
Sbjct: 427 LVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESG 477

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Homo sapiens (taxid: 9606)

>sp|Q3TWN3|CNNM2_MOUSE Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 PE=1 SV=3

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 38/51 (74%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L K+E+NII GALE+  K VE++MT L DC+M+  E IL+F  +SEI+ +G
Sbjct: 427 LVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESG 477

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Mus musculus (taxid: 10090)

>sp|Q69ZF7|CNNM4_MOUSE Metal transporter CNNM4 OS=Mus musculus GN=Cnnm4 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 39/51 (76%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L K+E+N+I GALE+  K VE+IMT+L DC+M+  + IL+F  +SEI+ +G
Sbjct: 351 LVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESG 401

Probable metal transporter. The interaction with the metal ion chaperone COX11 suggests that it may play a role in sensory neuron functions (By similarity). May play a role in biomineralization and retinal function.

Mus musculus (taxid: 10090)

>sp|Q6P4Q7|CNNM4_HUMAN Metal transporter CNNM4 OS=Homo sapiens GN=CNNM4 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 39/51 (76%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L K+E+N+I GALE+  K VE+IMT+L DC+M+  + IL+F  +SEI+ +G
Sbjct: 354 LVKEELNMIQGALELRTKTVEDIMTQLQDCFMIRSDAILDFNTMSEIMESG 404

Probable metal transporter. The interaction with the metal ion chaperone COX11 suggests that it may play a role in sensory neuron functions (By similarity). May play a role in biomineralization and retinal function.

Homo sapiens (taxid: 9606)

>sp|P0C588|CNNM4_RAT Metal transporter CNNM4 OS=Rattus norvegicus GN=Cnnm4 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 39/51 (76%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L K+E+N+I GALE+  K VE+IMT+L DC+M+  + IL+F  +SEI+ +G
Sbjct: 352 LVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESG 402

Probable metal transporter. The interaction with the metal ion chaperone COX11 suggests that it may play a role in sensory neuron functions. May play a role in biomineralization and retinal function.

Rattus norvegicus (taxid: 10116)

>sp|A0JPA0|CNNM4_XENTR Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 42/60 (70%)

Query: 11  MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           ++ T     + ++E+NII GALE+  K VE++MTK++DC+ML  + +L+F  +S I+ +G
Sbjct: 342 LKVTEPYSGIVREEMNIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESG 401

Probable metal transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 2   KKKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFT 61
           K   KT + +  T  +  L KDEV IIS  L++  K+VEEIMT +++ + +  +TIL+  
Sbjct: 218 KSGLKTLVTLHRTMGVERLTKDEVTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDK 277

Query: 62  VISEIVRTG 70
            + +I  +G
Sbjct: 278 TVEKIFNSG 286

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
405973540	1096	Metal transporter CNNM2 [Crassostrea gig	0.845	0.054	0.516	9e-11
328720335	986	PREDICTED: metal transporter CNNM2-like	0.718	0.051	0.627	2e-10
328720337	950	PREDICTED: metal transporter CNNM2-like	0.718	0.053	0.627	2e-10
328720333	931	PREDICTED: metal transporter CNNM2-like	0.718	0.054	0.627	2e-10
347967171	854	AGAP002094-PA [Anopheles gambiae str. PE	0.845	0.070	0.5	6e-10
357621730	962	ancient conserved domain protein 2 [Dana	0.845	0.062	0.533	7e-10
242021399	834	conserved hypothetical protein [Pediculu	0.718	0.061	0.588	1e-09
350403868	950	PREDICTED: metal transporter CNNM2-like	0.845	0.063	0.5	3e-09
170073576	553	MAM3 [Culex quinquefasciatus] gi|1678702	0.845	0.108	0.45	3e-09
260817760	800	hypothetical protein BRAFLDRAFT_86581 [B	0.845	0.075	0.5	4e-09

>gi|405973540|gb|EKC38248.1| Metal transporter CNNM2 [Crassostrea gigas]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 47/60 (78%)

Query: 11  MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           ++ T     LK DEVNIISGAL++++K V+E+MTK++D YMLDI ++L+F  +SEI++ G
Sbjct: 597 VKVTKEFNDLKNDEVNIISGALDLSKKSVKEVMTKIEDVYMLDINSVLDFETVSEIMKRG 656

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|328720335|ref|XP_001945496.2| PREDICTED: metal transporter CNNM2-like isoform 1 [Acyrthosiphon pisum]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 44/51 (86%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L+KDEVNIISGALE+ +KKV ++MTKL+D YML  +TIL+F  +SEI+++G
Sbjct: 511 LEKDEVNIISGALELHRKKVGDVMTKLEDVYMLSYDTILDFETVSEIMKSG 561

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720337|ref|XP_003247005.1| PREDICTED: metal transporter CNNM2-like isoform 3 [Acyrthosiphon pisum]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 44/51 (86%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L+KDEVNIISGALE+ +KKV ++MTKL+D YML  +TIL+F  +SEI+++G
Sbjct: 511 LEKDEVNIISGALELHRKKVGDVMTKLEDVYMLSYDTILDFETVSEIMKSG 561

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720333|ref|XP_003247004.1| PREDICTED: metal transporter CNNM2-like isoform 2 [Acyrthosiphon pisum]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 44/51 (86%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           L+KDEVNIISGALE+ +KKV ++MTKL+D YML  +TIL+F  +SEI+++G
Sbjct: 511 LEKDEVNIISGALELHRKKVGDVMTKLEDVYMLSYDTILDFETVSEIMKSG 561

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967171|ref|XP_320945.5| AGAP002094-PA [Anopheles gambiae str. PEST] gi|333469727|gb|EAA01004.5| AGAP002094-PA [Anopheles gambiae str. PEST]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 48/60 (80%)

Query: 11  MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           ++ T ++  L KDEVN+ISG LE+ +KKVE++MT+L+D YML ++ +++F  ISEI++TG
Sbjct: 362 VQVTKDVNDLDKDEVNVISGVLELRKKKVEDVMTRLEDAYMLPMDAVMDFETISEIMQTG 421

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621730|gb|EHJ73464.1| ancient conserved domain protein 2 [Danaus plexippus]

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 49/60 (81%)

Query: 11  MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           ++ T+++  L KDEVNIISGALE+ +KKV ++MTKL+D +ML I ++L+F  +SEIV++G
Sbjct: 581 VKVTTDVNDLDKDEVNIISGALELRKKKVSDVMTKLEDVFMLPITSVLDFETMSEIVKSG 640

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021399|ref|XP_002431132.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516381|gb|EEB18394.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 42/51 (82%)

Query: 20  LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           ++KDEVNIISGALE+ +K V E+MTKL+D YMLD   IL+F  +S+I+++G
Sbjct: 318 IEKDEVNIISGALELRKKNVAEVMTKLEDVYMLDYNAILDFETVSDIMKSG 368

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403868|ref|XP_003486930.1| PREDICTED: metal transporter CNNM2-like [Bombus impatiens]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 47/60 (78%)

Query: 11  MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           ++ T+    L+KDEVNII+GALE+ +K V+++MTK++D YMLD   IL+F  +SEI+++G
Sbjct: 430 VKVTTGYNDLEKDEVNIIAGALELRKKTVKDVMTKIEDVYMLDYNAILDFETVSEIMKSG 489

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170073576|ref|XP_001870397.1| MAM3 [Culex quinquefasciatus] gi|167870221|gb|EDS33604.1| MAM3 [Culex quinquefasciatus]

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 49/60 (81%)

Query: 11  MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           ++ T+++  L KDEVN+ISG LE+ +K VE++MT+++D +MLD++ +L+F  I+EI+++G
Sbjct: 77  VKVTTDINDLDKDEVNVISGVLELRKKTVEDVMTRIEDAFMLDLDAVLDFETITEIMKSG 136

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260817760|ref|XP_002603753.1| hypothetical protein BRAFLDRAFT_86581 [Branchiostoma floridae] gi|229289076|gb|EEN59764.1| hypothetical protein BRAFLDRAFT_86581 [Branchiostoma floridae]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 11  MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
           M+       ++K E+NIISGALE+ QK V +IMT  + C+MLDIE IL+F  +SEI++ G
Sbjct: 233 MKMQHQFQEIEKHEINIISGALELRQKTVTDIMTPSEQCFMLDIEAILDFDTMSEIMKQG 292

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
RGD|1308728	878	Cnnm1 "cyclin M1" [Rattus norv	0.718	0.058	0.529	6.5e-09
UNIPROTKB|F1MD84	941	CNNM1 "Uncharacterized protein	0.718	0.054	0.529	7.1e-09
UNIPROTKB|F1PMJ7	948	CNNM1 "Uncharacterized protein	0.718	0.053	0.529	7.2e-09
UNIPROTKB|F1S8W6	949	CNNM1 "Uncharacterized protein	0.718	0.053	0.529	7.2e-09
UNIPROTKB|Q9NRU3	951	CNNM1 "Metal transporter CNNM1	0.718	0.053	0.529	7.2e-09
MGI|MGI:1891366	951	Cnnm1 "cyclin M1" [Mus musculu	0.718	0.053	0.529	7.2e-09
FB|FBgn0262124	834	uex "unextended" [Drosophila m	0.845	0.071	0.433	9.9e-09
UNIPROTKB|F1ND49	598	CNNM2 "Uncharacterized protein	0.718	0.085	0.509	1.3e-08
UNIPROTKB|Q6P4Q7	775	CNNM4 "Metal transporter CNNM4	0.718	0.065	0.509	2.4e-08
UNIPROTKB|F1S849	827	CNNM2 "Uncharacterized protein	0.718	0.061	0.529	2.6e-08

RGD|1308728 Cnnm1 "cyclin M1" [Rattus norvegicus (taxid:10116)]

 Score = 145 (56.1 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query:    20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             L K+E+NII GALE+  K VEE++T L DC+ML  + +L+F  +SEI+R+G
Sbjct:   339 LVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSG 389

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1MD84 CNNM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query:    20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             L K+E+NII GALE+  K VEE++T L DC+ML  + +L+F  +SEI+R+G
Sbjct:   409 LVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSG 459

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1PMJ7 CNNM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 145 (56.1 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query:    20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             L K+E+NII GALE+  K VEE++T L DC+ML  + +L+F  +SEI+R+G
Sbjct:   407 LVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSG 457

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1S8W6 CNNM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 145 (56.1 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query:    20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             L K+E+NII GALE+  K VEE++T L DC+ML  + +L+F  +SEI+R+G
Sbjct:   408 LVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSG 458

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q9NRU3 CNNM1 "Metal transporter CNNM1" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query:    20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             L K+E+NII GALE+  K VEE++T L DC+ML  + +L+F  +SEI+R+G
Sbjct:   410 LVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSG 460

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:1891366 Cnnm1 "cyclin M1" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query:    20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             L K+E+NII GALE+  K VEE++T L DC+ML  + +L+F  +SEI+R+G
Sbjct:   410 LVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSG 460

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0262124 uex "unextended" [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 9.9e-09, P = 9.9e-09
 Identities = 26/60 (43%), Positives = 45/60 (75%)

Query:    11 MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             +  T+++  L K+EVNIISGALE+ +K V ++MT ++D +ML ++ +L+F  +SEI+ +G
Sbjct:   348 VRVTNDVNDLDKNEVNIISGALELRKKTVADVMTHINDAFMLSLDALLDFETVSEIMNSG 407

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006873 "cellular ion homeostasis" evidence=ISS

UNIPROTKB|F1ND49 CNNM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 26/51 (50%), Positives = 38/51 (74%)

Query:    20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             L K+E+NII GALE+  K VE++MT L DC+M+  E +L+F  +SEI+ +G
Sbjct:   150 LVKEELNIIQGALELRTKTVEDVMTPLRDCFMIAAEAVLDFNTMSEIMESG 200

GO:0010960 "magnesium ion homeostasis" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

UNIPROTKB|Q6P4Q7 CNNM4 "Metal transporter CNNM4" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 26/51 (50%), Positives = 39/51 (76%)

Query:    20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             L K+E+N+I GALE+  K VE+IMT+L DC+M+  + IL+F  +SEI+ +G
Sbjct:   354 LVKEELNMIQGALELRTKTVEDIMTQLQDCFMIRSDAILDFNTMSEIMESG 404

GO:0006811 "ion transport" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031214 "biomineral tissue development" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1S849 CNNM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 139 (54.0 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 27/51 (52%), Positives = 38/51 (74%)

Query:    20 LKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
             L K+E+NII GALE+  K VE++MT L DC+M+  E IL+F  +SEI+ +G
Sbjct:   427 LVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESG 477

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0010960 "magnesium ion homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0GA42	CNNM1_MOUSE	No assigned EC number	0.5294	0.7183	0.0536	yes	N/A
Q9NRU3	CNNM1_HUMAN	No assigned EC number	0.5294	0.7183	0.0536	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	71
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	0.002

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 19  ALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG 70
            L+++E  +I+  L++  + V EIMT   D   LD+   +   +I  I+ +G
Sbjct: 188 VLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESG 238

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
PRK11573	413	hypothetical protein; Provisional	99.5
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.47
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.46
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.44
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.31
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.28
KOG2118|consensus	498		98.78
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	96.94
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	95.18
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	93.05
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	88.08
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	85.28
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	84.04
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	83.37
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	82.75
PLN02274	505	inosine-5'-monophosphate dehydrogenase	81.56
COG4109	432	Predicted transcriptional regulator containing CBS	81.33
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	81.25
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	80.32

>PRK11573 hypothetical protein; Provisional

Probab=99.50  E-value=1.2e-14  Score=106.01  Aligned_cols=64  Identities=11%  Similarity=0.318  Sum_probs=57.6

Q ss_pred             chhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076          3 KKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus         3 ~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .|++++++....    .++++|++||.|+|+|++++|+||||||++|++++.+++++ ++++.+.++||
T Consensus       157 eEl~~lv~~~~~----~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~  220 (413)
T PRK11573        157 EELRTIVHESRS----QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPH  220 (413)
T ss_pred             HHHHHHHHHHhh----hcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCC
Confidence            477777764322    59999999999999999999999999999999999999999 79999999998

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.47  E-value=5.5e-14  Score=102.52  Aligned_cols=60  Identities=25%  Similarity=0.448  Sum_probs=56.2

Q ss_pred             eecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         11 MEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        11 ~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +..+.+.|.++++|+.|++|+|+|++++|++|||||++|++++.+.+.+ ++++.+.++||
T Consensus       180 ~~~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~  239 (429)
T COG1253         180 VSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGH  239 (429)
T ss_pred             HHhHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCC
Confidence            3456678999999999999999999999999999999999999999999 79999999998

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.46  E-value=5.3e-14  Score=102.32  Aligned_cols=65  Identities=23%  Similarity=0.431  Sum_probs=57.2

Q ss_pred             chhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076          3 KKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus         3 ~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .|++.+++.  +.+.| ++++|++|++|+|+|++++|+||||||++|++++.+++++ ++++.+.++||
T Consensus       160 eEl~~lv~~--~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~  224 (408)
T TIGR03520       160 DQLSQALEL--TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGY  224 (408)
T ss_pred             HHHHHHHHh--HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCC
Confidence            466777653  34445 6899999999999999999999999999999999999999 79999999997

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.44  E-value=1e-13  Score=97.22  Aligned_cols=66  Identities=14%  Similarity=0.312  Sum_probs=60.0

Q ss_pred             chhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076          3 KKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus         3 ~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .|+++|+.  .+.+.|.|+++|++||.|+|+|++++|++|||||.++++++.++++. ++++.+.++||
T Consensus        35 eEl~~l~~--~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~~~~~  100 (292)
T PRK15094         35 DELLALIR--DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAH  100 (292)
T ss_pred             HHHHHHHH--hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHHhcCC
Confidence            46777764  46667999999999999999999999999999999999999999999 79999999886

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.31  E-value=3.6e-13  Score=93.93  Aligned_cols=62  Identities=13%  Similarity=0.314  Sum_probs=58.2

Q ss_pred             eeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076          9 IPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus         9 ~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +-++.++.++.|+.+.+.|++|++++.|.+|+|||+||+++++|+.+.+++ +++..|++++|
T Consensus        39 ~liRdse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l~~iiesaH  100 (293)
T COG4535          39 ELIRDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAH  100 (293)
T ss_pred             HHHHHhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHHHHHHHhcc
Confidence            345678889999999999999999999999999999999999999999999 79999999987

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.28  E-value=1.5e-12  Score=95.04  Aligned_cols=67  Identities=15%  Similarity=0.346  Sum_probs=58.5

Q ss_pred             cchhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076          2 KKKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus         2 ~~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +.||++.|+..  +..|...+.+++||.|+|||++.+|+||||||.+|.++++|.+++ ++++++..+.|
T Consensus       167 ~EElR~~v~~~--~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~H  233 (423)
T COG4536         167 KEELRTAVNES--GSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPH  233 (423)
T ss_pred             HHHHHHHHHHh--hcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCCC
Confidence            34677776543  445677788999999999999999999999999999999999999 79999999987

>KOG2118|consensus

Probab=98.78  E-value=1.2e-09  Score=81.78  Aligned_cols=70  Identities=34%  Similarity=0.501  Sum_probs=65.9

Q ss_pred             cchhccceeeecccCC-CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076          2 KKKFKTGIPMEATSNL-VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus         2 ~~~~~~l~~~~~~~~~-g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+++++|+..+.+... |.+..+|..++.|+++|.++.|++||||..++|+++.+..++++.+..+.++||
T Consensus       168 ~~~l~~lv~~~~~e~~~g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~  238 (498)
T KOG2118|consen  168 RASLLALVQLVGNEAGKGDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGY  238 (498)
T ss_pred             hHHHHHHHHHHhcccccCcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCc
Confidence            3678999999988777 999999999999999999999999999999999999999999999999999987

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=96.94  E-value=0.0011  Score=49.00  Aligned_cols=48  Identities=19%  Similarity=0.200  Sum_probs=44.0

Q ss_pred             CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHH
Q psy17076         18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVR   68 (71)
Q Consensus        18 g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~   68 (71)
                      +.+++++++++.++++|.+.+|+++|+  +++.+++.+.++. ++++.+.+
T Consensus       112 ~~l~~~er~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~-eal~~l~~  159 (449)
T TIGR00400       112 ASSTEEERKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVG-KALDYIRR  159 (449)
T ss_pred             HcCCHHHHHHHHHHhCCCcchHHHhCc--CceEEECCCCcHH-HHHHHHHh
Confidence            468999999999999999999999998  5899999999999 69998864

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PF00571 CBS: CBS domain CBS domain web page

Probab=95.18  E-value=0.01  Score=31.05  Aligned_cols=30  Identities=20%  Similarity=0.266  Sum_probs=26.7

Q ss_pred             eecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         39 VEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        39 V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |+++|+|  ++.+++.++++. ++++.+.++++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~   30 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGI   30 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTS
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCC
Confidence            5789999  999999999999 79999988764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=93.05  E-value=0.13  Score=38.18  Aligned_cols=52  Identities=12%  Similarity=0.197  Sum_probs=41.4

Q ss_pred             ecccCCCcCCH-----HHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         12 EATSNLVALKK-----DEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        12 ~~~~~~g~i~~-----~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ......|.|.+     ++.+++.+++++++..++       ++++++.+.++. ++++.+.+++|
T Consensus        55 a~~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~~~~-------~~vtl~~~~tv~-eal~~m~~~~~  111 (450)
T TIGR01302        55 AREGGIGVIHRNMSIEEQAEQVKRVKRAENGIIS-------DPVTISPETTVA-DVLELMERKGI  111 (450)
T ss_pred             HhcCCCceeecCCCHHHHHHHHhhhccccCceec-------CceEeCCCCCHH-HHHHHHHHcCC
Confidence            34455788884     899999999988876443       678999999999 69999887764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=88.08  E-value=0.4  Score=33.56  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ...+|+++|++..++..++.++++. ++++.+.+++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~  234 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKN  234 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcC
Confidence            6678999999877999999999999 6999887765

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=85.28  E-value=0.97  Score=25.65  Aligned_cols=53  Identities=9%  Similarity=0.159  Sum_probs=38.0

Q ss_pred             cCCCcCCHHH-HHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         15 SNLVALKKDE-VNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        15 ~~~g~i~~~e-~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .-.|.+...+ ...+....+....++.++|.|.  +..++.+.++. ++++.+.+++
T Consensus        36 ~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~   89 (114)
T cd04604          36 RLVGIFTDGDLRRALEKGLDILTLPVADVMTRN--PKTIDPDALAA-EALELMEENK   89 (114)
T ss_pred             CEEEEechHHHHHHHhccCccccCCHHHhhccC--CeEECCCCcHH-HHHHHHHHcC
Confidence            4456676554 4445555556667899999874  56789999999 6999887765

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=84.04  E-value=0.68  Score=35.22  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=31.8

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ..+.+|++||+|..++++++.+.++. ++++.+.+++
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~  193 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHK  193 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcC
Confidence            45678999999988999999999999 7999988765

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=83.37  E-value=1  Score=25.78  Aligned_cols=52  Identities=15%  Similarity=0.120  Sum_probs=36.6

Q ss_pred             CCCcCCHHHHHHHHHhhc-CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         16 NLVALKKDEVNIISGALE-MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        16 ~~g~i~~~e~~ml~~~l~-l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      -.|.+...+  ++....+ ..+.++.++|.|-..+..++.++++. ++++.+.+++
T Consensus        37 ~~G~v~~~d--l~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~   89 (114)
T cd04801          37 YVGIISLAD--LRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQG   89 (114)
T ss_pred             EEEEEEHHH--HHHHHHhhccccchhhhhcccccceEECCCCcHH-HHHHHHHHCC
Confidence            346666544  3322221 23578999999877778999999999 7999988775

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=82.75  E-value=1.3  Score=26.08  Aligned_cols=53  Identities=8%  Similarity=0.105  Sum_probs=37.6

Q ss_pred             cCCCcCCHHHHHHHHHhhcC------CC--ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         15 SNLVALKKDEVNIISGALEM------TQ--KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        15 ~~~g~i~~~e~~ml~~~l~l------~d--~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ...|..+.+. +.+..-|.+      .+  .+|+++|.+  ++..++.+.++. ++++.+.++++
T Consensus        29 ~~~g~~n~e~-~~vl~~~~~~~p~ll~~v~~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~   89 (113)
T cd04597          29 ARLGEPNPQT-RYVLEYLGIEPPILLADVHPRVRDVINR--KPVTARPNDPLR-EALNLMHEHNI   89 (113)
T ss_pred             hhcCCCCHHH-HHHHHHcCCCCchhhcchhhhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCC
Confidence            4456666554 555555553      33  679999986  677889999999 69998877653

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=81.56  E-value=1.1  Score=34.16  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=36.7

Q ss_pred             CCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++..+...+.    -.+.+|+++|+|...+..++.+.++. ++++.+.+++
T Consensus       147 vGIVT~~DL~~v~----~~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~  195 (505)
T PLN02274        147 LGYVTKRDWDFVN----DRETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSK  195 (505)
T ss_pred             EEEEEHHHHhhcc----ccCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcC
Confidence            3556554433221    24678999999988899999999999 7999988765

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=81.33  E-value=0.96  Score=33.88  Aligned_cols=46  Identities=28%  Similarity=0.372  Sum_probs=37.6

Q ss_pred             HHHHHHhhc-----CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         25 VNIISGALE-----MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        25 ~~ml~~~l~-----l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+||..|+.     =.=.+|.|||+|..+-..|..+.+++ +..+...+.||
T Consensus       171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~  221 (432)
T COG4109         171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGH  221 (432)
T ss_pred             HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCC
Confidence            356665552     33468999999999999999999999 79999998887

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=81.25  E-value=1  Score=34.18  Aligned_cols=35  Identities=14%  Similarity=0.123  Sum_probs=30.9

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .+.+|+++|+|+.+++.++.+.++. ++++.+.+++
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~  191 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESR  191 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcC
Confidence            4578999999999999999999999 7999888765

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=80.32  E-value=1.5  Score=24.68  Aligned_cols=52  Identities=10%  Similarity=0.180  Sum_probs=34.6

Q ss_pred             CCCcCCHHHHH--HHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         16 NLVALKKDEVN--IISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        16 ~~g~i~~~e~~--ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      --|.+...+..  +.....+..+.++.++|.+  .+.+++.+.++. ++++.+.+++
T Consensus        36 ~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~   89 (113)
T cd04623          36 LVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVD-EAMALMTERR   89 (113)
T ss_pred             EEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcC
Confidence            34666655421  1111112335689999966  688899999999 6999988765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.2
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.13
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.1
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.99
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.67
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.58
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.43
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.1
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	97.97
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.93
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.75
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.74
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.68
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.67
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.48
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.37
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.34
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.2
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	96.98
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	96.67
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	96.65
2oux_A	286	Magnesium transporter; 10001B, structural genomics	96.6
4esy_A	170	CBS domain containing membrane protein; structural	96.49
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	96.48
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	96.46
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	96.18
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	95.94
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	95.93
4fry_A	157	Putative signal-transduction protein with CBS DOM;	95.44
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	95.43
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	95.42
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	95.29
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	95.26
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	95.14
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	95.03
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	94.56
3ddj_A	296	CBS domain-containing protein; structural genomics	94.1
1pbj_A	125	Hypothetical protein; structural genomics, domain,	93.74
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	93.7
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	93.66
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	93.54
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	92.78
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	92.51
4fry_A	157	Putative signal-transduction protein with CBS DOM;	92.36
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	92.06
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	91.99
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	91.94
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	91.91
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	91.78
1pbj_A	125	Hypothetical protein; structural genomics, domain,	91.74
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	90.86
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	90.77
1pvm_A	184	Conserved hypothetical protein TA0289; structural	90.59
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	90.2
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	90.0
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	89.86
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	89.83
1vr9_A	213	CBS domain protein/ACT domain protein; structural	89.75
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	89.38
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	89.35
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	89.14
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	89.09
3ddj_A	296	CBS domain-containing protein; structural genomics	89.07
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	88.94
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	88.85
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	88.82
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	88.65
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	88.63
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	88.34
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	88.16
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	88.11
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	88.09
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	87.6
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	87.46
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	87.02
1pvm_A	184	Conserved hypothetical protein TA0289; structural	86.89
3oco_A	153	Hemolysin-like protein containing CBS domains; str	86.62
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	86.44
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	86.05
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	85.6
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	85.49
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	85.12
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	85.0
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	84.6
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	84.47
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	84.15
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	84.15
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	84.14
4esy_A	170	CBS domain containing membrane protein; structural	83.74
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	83.31
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	81.26
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	80.49
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	80.08

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.20  E-value=6e-12  Score=78.06  Aligned_cols=66  Identities=9%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             chhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076          3 KKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus         3 ~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .||+.|+.  .+.+.|.++++|++++.++++|++.+|++||+||.++++++.++++. ++++.+.++||
T Consensus         6 ~el~~li~--~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~   71 (156)
T 3oi8_A            6 EDVLNLLR--QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAH   71 (156)
T ss_dssp             HHHHHHHH--HHHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCC
T ss_pred             HHHHHHHH--hHHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCC
Confidence            46777765  45567999999999999999999999999999999999999999999 79999998775

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.13  E-value=1.1e-11  Score=78.00  Aligned_cols=66  Identities=11%  Similarity=0.305  Sum_probs=31.1

Q ss_pred             chhccceeeecccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076          3 KKFKTGIPMEATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus         3 ~~~~~l~~~~~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .|+++|+.  .+.+.|.++++|++++.++++|.+.+|++||+|+.++++++.++++. ++++.+.+++|
T Consensus        10 ~el~~l~~--~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~   75 (172)
T 3lhh_A           10 EDIQAMLQ--EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPH   75 (172)
T ss_dssp             -----------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCC
T ss_pred             HHHHHHHH--HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCC
Confidence            57777775  45667999999999999999999999999999999999999999999 79999988775

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.10  E-value=5.6e-11  Score=75.61  Aligned_cols=58  Identities=22%  Similarity=0.366  Sum_probs=50.2

Q ss_pred             cccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         13 ATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        13 ~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+.+.|.++++|++++.++++|.+.+|++||+|+.++++++.++++. ++++.+.++||
T Consensus        12 ~~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~   69 (173)
T 3ocm_A           12 AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPH   69 (173)
T ss_dssp             ------CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSC
T ss_pred             hHHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCC
Confidence            45667999999999999999999999999999999999999999999 79999998875

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.99  E-value=1.4e-10  Score=70.70  Aligned_cols=55  Identities=18%  Similarity=0.277  Sum_probs=37.2

Q ss_pred             CCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         16 NLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        16 ~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +.|.++++|++++.++++|.+.+|+++|+||.++++++.++++. ++++.+.++++
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~   56 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGV   56 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCC
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCC
Confidence            56889999999999999999999999999999999999999999 79999998875

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.67  E-value=2.1e-09  Score=66.00  Aligned_cols=52  Identities=13%  Similarity=0.291  Sum_probs=43.8

Q ss_pred             cCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         19 ALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        19 ~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .++++|++++.++++|++.+|+++|+||.++++++.++++. ++++.+.++++
T Consensus         2 ~l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~   53 (153)
T 3oco_A            2 NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQY   53 (153)
T ss_dssp             ------CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCC
T ss_pred             CcCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCC
Confidence            46788999999999999999999999999999999999999 79999988774

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.58  E-value=6.9e-09  Score=69.81  Aligned_cols=56  Identities=5%  Similarity=0.115  Sum_probs=51.5

Q ss_pred             cCCCcCCHHHHHHHHHhhcC-CCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         15 SNLVALKKDEVNIISGALEM-TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        15 ~~~g~i~~~e~~ml~~~l~l-~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+.|.++++|+.++.++++| ++++|+|+|+||.++++++.+.++. ++++.+.++|+
T Consensus         7 ~~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~   63 (323)
T 3t4n_C            7 DSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSI   63 (323)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTC
T ss_pred             CCCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCC
Confidence            35577889999999999999 9999999999999999999999999 79999999875

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.43  E-value=6.8e-08  Score=65.21  Aligned_cols=53  Identities=6%  Similarity=0.144  Sum_probs=47.8

Q ss_pred             CcCCHHHHHHHHHhhcCCC-ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         18 VALKKDEVNIISGALEMTQ-KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        18 g~i~~~e~~ml~~~l~l~d-~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +.++++++.|+.++++|-+ ++|++||+||.++++++.+.++. ++++.+.++||
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~   55 (334)
T 2qrd_G            2 MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNI   55 (334)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTC
T ss_pred             CCCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCC
Confidence            3467889999999999655 99999999999999999999999 79999999886

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.10  E-value=6.6e-07  Score=55.73  Aligned_cols=45  Identities=9%  Similarity=0.012  Sum_probs=39.6

Q ss_pred             HHHHHhh-cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         26 NIISGAL-EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        26 ~ml~~~l-~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .||...| +|-.++++++||||.++++++.++++. ++++.+.++||
T Consensus         3 ami~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~   48 (156)
T 3k6e_A            3 AMIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTY   48 (156)
T ss_dssp             HHHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSS
T ss_pred             chHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCC
Confidence            4666666 377789999999999999999999999 79999999886

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=97.97  E-value=9.9e-07  Score=59.48  Aligned_cols=56  Identities=7%  Similarity=0.157  Sum_probs=41.6

Q ss_pred             cccCCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         13 ATSNLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        13 ~~~~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+...|.+.+.+++.+.+.  |++++|+|||+|+.++++++.++++. +++..+.++||
T Consensus        13 ~~~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~   68 (330)
T 2v8q_E           13 ENEHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGV   68 (330)
T ss_dssp             ----------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTC
T ss_pred             CChHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCC
Confidence            4556677777777888887  47899999999999999999999999 79999998875

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.93  E-value=1e-05  Score=52.55  Aligned_cols=48  Identities=4%  Similarity=0.016  Sum_probs=44.3

Q ss_pred             cCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHc
Q psy17076         19 ALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRT   69 (71)
Q Consensus        19 ~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~s   69 (71)
                      .+++++++++.++|.|.+.+|+++|+|  ++++++.++++. ++++.+.+.
T Consensus        36 ~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~   83 (205)
T 3kxr_A           36 QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRI   83 (205)
T ss_dssp             HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHC
T ss_pred             cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhh
Confidence            468999999999999999999999998  799999999999 699998873

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.75  E-value=9.7e-06  Score=48.10  Aligned_cols=37  Identities=24%  Similarity=0.395  Sum_probs=32.8

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .++.+|+++|+|+.++++++.++++. ++++.+.++||
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~   38 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAH   38 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCC
Confidence            46889999999999999999999999 79999998875

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.74  E-value=5.7e-06  Score=49.08  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         33 EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        33 ~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +|++.+|+++|+|+.++++++.++++. ++++.+.++||
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~   39 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPF   39 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSC
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCC
Confidence            478999999999999999999999999 79999888764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.68  E-value=1.5e-05  Score=47.45  Aligned_cols=35  Identities=14%  Similarity=0.318  Sum_probs=31.8

Q ss_pred             CceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +.+|++||+|+.++++++.++++. ++++.+.+++|
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~   35 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPH   35 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSS
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCC
Confidence            368999999999999999999999 79999988875

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=97.67  E-value=1.3e-05  Score=48.08  Aligned_cols=36  Identities=8%  Similarity=0.203  Sum_probs=31.7

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ++.+|++||+|+.++++++.++++. ++++.+.++||
T Consensus         1 ~~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~   36 (136)
T 3lfr_A            1 ADLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAH   36 (136)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCC
T ss_pred             CCCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCC
Confidence            3689999999999999999999999 79999998775

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.48  E-value=3.4e-05  Score=45.45  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=31.6

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ++.+|+++|+|+.++++++.++++. ++++.+.++++
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~   36 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAH   36 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCC
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCC
Confidence            4689999999999999999999999 79999988775

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.37  E-value=0.00011  Score=49.18  Aligned_cols=50  Identities=10%  Similarity=0.104  Sum_probs=45.7

Q ss_pred             CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        18 g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      +.++..++.++.+++.+.+.+|+++|+|  ++++++.++++. ++++.+.+++
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~  165 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAA  165 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHcc
Confidence            4678899999999999999999999998  899999999999 7999998763

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.34  E-value=0.00019  Score=52.06  Aligned_cols=50  Identities=10%  Similarity=0.104  Sum_probs=46.2

Q ss_pred             CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        18 g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      +.++++++.++.+++++.+.+|+++|+|  ++++++.++++. ++++.+.+++
T Consensus       136 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~~~~  185 (473)
T 2zy9_A          136 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAA  185 (473)
T ss_dssp             TSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHHHHG
T ss_pred             hcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHHhcc
Confidence            6789999999999999999999999997  899999999999 7999988754

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=96.98  E-value=0.00028  Score=42.43  Aligned_cols=43  Identities=16%  Similarity=0.161  Sum_probs=32.3

Q ss_pred             HHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         28 ISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        28 l~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ..+...|.+.+|+++|+|+.++++++.+.++. ++++.+.++++
T Consensus         2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~   44 (157)
T 2emq_A            2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGY   44 (157)
T ss_dssp             --------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSS
T ss_pred             chhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCc
Confidence            34566788999999999999999999999999 79999988764

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=96.67  E-value=0.00033  Score=42.16  Aligned_cols=49  Identities=18%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhhcCCCc---eeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         22 KDEVNIISGALEMTQK---KVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        22 ~~e~~ml~~~l~l~d~---~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +++....++.-.++..   +|+++|+|+.++.+++.++++. ++++.+.++++
T Consensus        10 ~~~~~~~~~~~~l~~~l~~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~   61 (149)
T 3k2v_A           10 AEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNL   61 (149)
T ss_dssp             ----------CHHHHHTTSBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTS
T ss_pred             HHHhhhcCCCchhchhcccCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCC
Confidence            3444444544444444   9999999999999999999999 79999888764

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=96.65  E-value=0.00064  Score=41.16  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=33.8

Q ss_pred             HHHHh-hcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         27 IISGA-LEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        27 ml~~~-l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |+... .+|.+.+|+++|+|+.++++++.++++. ++++.+.++++
T Consensus         3 ~~~~~~~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~   47 (159)
T 1yav_A            3 LISLQSDQLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGY   47 (159)
T ss_dssp             --------CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCC
T ss_pred             hHHHHHHHHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCC
Confidence            44443 3678899999999999999999999999 79999887764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=96.60  E-value=0.0013  Score=44.39  Aligned_cols=49  Identities=14%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHc
Q psy17076         18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRT   69 (71)
Q Consensus        18 g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~s   69 (71)
                      +.++.+++..+.+++.+.+.+|+++|+|  ++++++.++++. ++++.+.++
T Consensus       118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~  166 (286)
T 2oux_A          118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQ  166 (286)
T ss_dssp             HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHc
Confidence            4578889999999999999999999997  799999999999 799998876

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=96.49  E-value=0.0014  Score=40.30  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         22 KDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        22 ~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +..+..+..++  ++.+|+|||++  ++++++.++++. ++++.+.++++
T Consensus         5 ~~~~~~~~~~l--~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~   49 (170)
T 4esy_A            5 QARRRAIARAI--RQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQI   49 (170)
T ss_dssp             HHHHHHHHHHH--HTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTC
T ss_pred             HHHHHHHHHHH--cCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCC
Confidence            34455566554  68999999986  789999999999 79999998875

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=96.48  E-value=0.00039  Score=41.57  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=35.1

Q ss_pred             hhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         31 ALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        31 ~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .-.|.+.+|+++|+|+.++++++.++++. ++++.+.++++
T Consensus         9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~   48 (150)
T 3lqn_A            9 KDEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGY   48 (150)
T ss_dssp             HHHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTC
T ss_pred             HHhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCC
Confidence            34577899999999999999999999999 79999887764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=96.46  E-value=0.0013  Score=38.79  Aligned_cols=36  Identities=22%  Similarity=0.232  Sum_probs=32.4

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +..+|+++|+|+.++++++.++++. ++++.+.++++
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~   38 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRI   38 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTC
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCC
Confidence            4678999999999999999999999 79999988764

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=96.18  E-value=0.00099  Score=49.74  Aligned_cols=36  Identities=11%  Similarity=0.039  Sum_probs=32.8

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHH-HcCC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIV-RTGE   71 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~-~sgh   71 (71)
                      .+.+|+|+|+||+++.+++.++++. ++.+.+. +++|
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~  487 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNR  487 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTC
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCc
Confidence            6789999999999999999999999 7999988 6765

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=95.94  E-value=0.0023  Score=38.97  Aligned_cols=35  Identities=14%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             CceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      -.+|+++|+|+.++++++.++++. ++++.+.++++
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~   37 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKV   37 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCC
Confidence            368999999999999999999999 79999988764

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=95.93  E-value=0.0012  Score=38.73  Aligned_cols=33  Identities=3%  Similarity=0.128  Sum_probs=29.7

Q ss_pred             eeecceeec-ccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         38 KVEEIMTKL-DDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        38 ~V~eIMtPR-~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +|+++|+|| .++.+++.++++. ++++.+.++++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~   40 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNI   40 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCC
Confidence            899999998 8999999999999 79999887663

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=95.44  E-value=0.0029  Score=38.00  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             ceeecceeec----ccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKL----DDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR----~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ++|+++|+|+    .++.+++.++++. ++++.+.++++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~   44 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGI   44 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTC
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCC
Confidence            6899999999    8999999999999 79999888764

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=95.43  E-value=0.0079  Score=34.93  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |++.+|+++|+|  ++.+++.++++. ++++.+.++|+
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~   35 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNI   35 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTC
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCC
Confidence            468899999998  588999999999 79999887764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=95.42  E-value=0.0047  Score=36.99  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             HHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         27 IISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        27 ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +..+.+.+...+|+++|+|  ++++++.++++. ++++.+.++++
T Consensus         3 l~~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~   44 (164)
T 2pfi_A            3 ILGRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDV   44 (164)
T ss_dssp             -------CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCC
T ss_pred             CccccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCC
Confidence            4456678889999999998  788899999999 79999887764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=95.29  E-value=0.0036  Score=38.13  Aligned_cols=41  Identities=5%  Similarity=0.041  Sum_probs=35.3

Q ss_pred             HhhcCCCceeecceeec-ccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         30 GALEMTQKKVEEIMTKL-DDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        30 ~~l~l~d~~V~eIMtPR-~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ....+...+|+++|+|+ .++.+++.++++. ++++.+.++++
T Consensus        17 ~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~   58 (165)
T 3fhm_A           17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKI   58 (165)
T ss_dssp             CCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTC
T ss_pred             hhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCC
Confidence            34567889999999998 8899999999999 79999887763

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=95.26  E-value=0.015  Score=35.08  Aligned_cols=51  Identities=16%  Similarity=0.277  Sum_probs=40.4

Q ss_pred             CCcCCHHHHHHHHHh---hcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGA---LEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~---l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++.  .+++...   -...+.+|+++|+|+.++++++.++++. ++++.+.+++
T Consensus        60 ~Givt~--~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~  113 (159)
T 3fv6_A           60 VGVLSR--KDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQ  113 (159)
T ss_dssp             EEEEEH--HHHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHT
T ss_pred             EEEEeH--HHHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcC
Confidence            466664  4555544   2457889999999999999999999999 7999988776

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=95.14  E-value=0.01  Score=34.61  Aligned_cols=37  Identities=11%  Similarity=0.027  Sum_probs=31.5

Q ss_pred             hcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         32 LEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        32 l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +.|...+|+++|++  ++.+++.++++. ++++.+.++++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~   38 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDV   38 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTC
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            56889999999984  789999999999 69999887763

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=95.03  E-value=0.0042  Score=38.01  Aligned_cols=37  Identities=11%  Similarity=0.056  Sum_probs=31.5

Q ss_pred             CCCceeecceeeccc--EEEe--eCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDD--CYML--DIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~--v~~l--~~~~~l~~~~~~~i~~sgh   71 (71)
                      +.+.+|++||+|..+  ++++  +.++++. ++++.+.++++
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~   48 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTY   48 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCC
Confidence            368899999999976  7888  9999999 79999988764

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=94.56  E-value=0.0089  Score=38.63  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ...+|++||+| .++++++.+.++. ++++.+.++++
T Consensus       183 ~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~  217 (245)
T 3l2b_A          183 QSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRY  217 (245)
T ss_dssp             GGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCC
T ss_pred             cCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCC
Confidence            46789999999 8999999999999 79999998775

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=94.10  E-value=0.02  Score=37.54  Aligned_cols=40  Identities=13%  Similarity=0.035  Sum_probs=33.6

Q ss_pred             HHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         29 SGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        29 ~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+.+++.+.+|+++|+|  ++++++.++++. ++++.+.++|+
T Consensus        85 ~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~  124 (296)
T 3ddj_A           85 GDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNF  124 (296)
T ss_dssp             HHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTC
T ss_pred             hhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCC
Confidence            34456778999999998  788999999999 79999988764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=93.74  E-value=0.025  Score=32.21  Aligned_cols=53  Identities=15%  Similarity=0.219  Sum_probs=38.7

Q ss_pred             CCCcCCHHHH-HHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         16 NLVALKKDEV-NIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        16 ~~g~i~~~e~-~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      -.|.++..+. ..+.+-.++.+.+|+++|+|  .+.+++.++++. ++++.+.++++
T Consensus        43 ~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~   96 (125)
T 1pbj_A           43 RVGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVV   96 (125)
T ss_dssp             EEEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTC
T ss_pred             eEEEEeHHHHHHHHhcCCcccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCC
Confidence            3466766542 22333345678999999997  688999999999 79999887763

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=93.70  E-value=0.028  Score=32.61  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=29.8

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |.+.+|+++|+|  ++.+++.++++. ++++.+.++++
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~   39 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKI   39 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCC
Confidence            568899999986  788899999999 69998887653

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=93.66  E-value=0.023  Score=34.15  Aligned_cols=36  Identities=14%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         33 EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        33 ~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+...+|+++|+|  ++++++.++++. ++++.+.++++
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~   47 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPV   47 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTT
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCC
Confidence            3577899999987  799999999999 79999987763

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=93.54  E-value=0.024  Score=36.41  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         33 EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        33 ~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +..+.+|+++|+|  ++++++.+.++. ++++.+.++|+
T Consensus        80 ~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~  115 (280)
T 3kh5_A           80 AAINEPVREIMEE--NVITLKENADID-EAIETFLTKNV  115 (280)
T ss_dssp             HHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTC
T ss_pred             HHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCC
Confidence            4447899999998  889999999999 79999988774

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=92.78  E-value=0.074  Score=30.80  Aligned_cols=50  Identities=16%  Similarity=0.244  Sum_probs=38.2

Q ss_pred             CCCcCCHHHHHHHHHhh----cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         16 NLVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        16 ~~g~i~~~e~~ml~~~l----~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      -.|.++..  +++..++    ...+.+|+++|+|  ++.+++.++++. ++++.+.+++
T Consensus        51 ~~Givt~~--dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~  104 (135)
T 2rc3_A           51 LVGILTER--DFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMR  104 (135)
T ss_dssp             EEEEEEHH--HHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHT
T ss_pred             EEEEEehH--HHHHHHHHcCCCcccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhC
Confidence            34667654  4554443    3578999999997  678999999999 7999988776

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=92.51  E-value=0.071  Score=31.16  Aligned_cols=32  Identities=13%  Similarity=0.220  Sum_probs=27.8

Q ss_pred             ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+|+++|+|  ++.+++.++++. ++++.+.++++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~   36 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRV   36 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCC
Confidence            589999996  789999999999 69999887663

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=92.36  E-value=0.064  Score=31.95  Aligned_cols=52  Identities=12%  Similarity=0.113  Sum_probs=38.9

Q ss_pred             cCCCcCCHHHHHHHHHhh----cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         15 SNLVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        15 ~~~g~i~~~e~~ml~~~l----~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .-.|.++.  .+++..+.    +..+.+|+++|+|  ++++++.++++. ++++.+.++++
T Consensus        54 ~~~Givt~--~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~  109 (157)
T 4fry_A           54 DIAGIVTE--RDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRM  109 (157)
T ss_dssp             SEEEEEEH--HHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTC
T ss_pred             EEEEEEEH--HHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCC
Confidence            33466665  44554443    3568999999997  688999999999 79999988763

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=92.06  E-value=0.047  Score=31.52  Aligned_cols=35  Identities=11%  Similarity=0.107  Sum_probs=27.8

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +.-.+|+++|++  ++.+++.++++. ++++.+.++++
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~   39 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDI   39 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTC
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCC
Confidence            455799999996  788999999999 79999887653

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=91.99  E-value=0.067  Score=32.13  Aligned_cols=40  Identities=5%  Similarity=0.149  Sum_probs=30.9

Q ss_pred             HHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         26 NIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        26 ~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ..+...  |...+|+++|++   .++++.++++. ++++.+.++++
T Consensus         8 ~~l~~~--l~~~~v~~im~~---~~~v~~~~~~~-~a~~~m~~~~~   47 (159)
T 3fv6_A            8 QLLADK--LKKLQVKDFQSI---PVVIHENVSVY-DAICTMFLEDV   47 (159)
T ss_dssp             HHHHHH--HTTCBGGGSCBC---CCEEETTSBHH-HHHHHHHHHTC
T ss_pred             HHHHHH--HhhCCHHHHcCC---CEEECCCCcHH-HHHHHHHHCCC
Confidence            334444  467899999996   34899999999 79999887763

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=91.94  E-value=0.068  Score=35.74  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         33 EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        33 ~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .....+|+|||++  +++++..++++. ++.+.+.+++|
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~   44 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKL   44 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCC
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCC
Confidence            3567899999986  799999999999 79999988775

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=91.91  E-value=0.039  Score=31.32  Aligned_cols=32  Identities=9%  Similarity=0.115  Sum_probs=27.1

Q ss_pred             ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ++|+++|+|  ++++++.++++. ++++.+.++++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~   32 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNI   32 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTC
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCC
Confidence            468999997  688999999999 79999887753

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=91.78  E-value=0.072  Score=32.09  Aligned_cols=34  Identities=24%  Similarity=0.105  Sum_probs=28.9

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ...+|+++|+|  ++++++.++++. ++++.+.++++
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~   36 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDI   36 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            45789999997  788999999999 79998887653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=91.74  E-value=0.056  Score=30.70  Aligned_cols=31  Identities=29%  Similarity=0.522  Sum_probs=26.8

Q ss_pred             eeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +|+++|+|  ++.+++.++++. ++++.+.++++
T Consensus         2 ~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~   32 (125)
T 1pbj_A            2 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAK   32 (125)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCC
T ss_pred             CHHHhcCC--CceEECCCCcHH-HHHHHHHHcCC
Confidence            68899987  789999999999 79999887663

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=90.86  E-value=0.067  Score=38.33  Aligned_cols=42  Identities=12%  Similarity=0.073  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         22 KDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        22 ~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +++++++.+++++     +++|+|  ++++++.+.++. ++++.+.+++|
T Consensus        80 e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           80 TEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             HHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            6778999988876     679997  889999999999 79999988764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=90.77  E-value=0.26  Score=28.38  Aligned_cols=50  Identities=22%  Similarity=0.282  Sum_probs=37.1

Q ss_pred             CCCcCCHHHHHHHHHhhc---CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         16 NLVALKKDEVNIISGALE---MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        16 ~~g~i~~~e~~ml~~~l~---l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      -.|.++..  +++..++.   ..+.+|+++|.|  .+.+++.++++. ++++.+.+++
T Consensus        50 ~~Givt~~--dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~  102 (138)
T 2yzi_A           50 VVGFFTKS--DIIRRVIVPGLPYDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHR  102 (138)
T ss_dssp             EEEEEEHH--HHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHT
T ss_pred             EEEEEeHH--HHHHHHHhcCCcccCCHHHHhhC--CCeEECCCCcHH-HHHHHHHhcC
Confidence            34666654  45544432   457899999987  678999999999 6999988776

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=90.59  E-value=0.22  Score=30.52  Aligned_cols=49  Identities=14%  Similarity=0.155  Sum_probs=37.8

Q ss_pred             CCcCCHHHHHHHHHhh----cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l----~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++.  .+++....    ...+.+|+++|.|  .+++++.++++. ++++.+.+++
T Consensus        53 vGivt~--~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~  105 (184)
T 1pvm_A           53 VGLLSE--RSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENG  105 (184)
T ss_dssp             EEEEEH--HHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHT
T ss_pred             EEEEeH--HHHHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcC
Confidence            466665  45555544    3577899999987  678999999999 7999988775

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=90.20  E-value=0.16  Score=30.30  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         33 EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        33 ~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ...+.+|+++|+|   +.+++.++++. ++++.+.+++
T Consensus        92 ~~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~  125 (157)
T 1o50_A           92 RLIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNN  125 (157)
T ss_dssp             CCSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHT
T ss_pred             HHcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCC
Confidence            3567899999998   88999999999 7999988776

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=90.00  E-value=0.13  Score=29.53  Aligned_cols=34  Identities=3%  Similarity=-0.004  Sum_probs=28.8

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ...+|+++|++.  +.+++.++++. ++++.+.++++
T Consensus         3 ~s~~v~~~m~~~--~~~v~~~~~~~-~a~~~~~~~~~   36 (128)
T 3gby_A            3 ASVTFSYLAETD--YPVFTLGGSTA-DAARRLAASGC   36 (128)
T ss_dssp             TTCBGGGGCBCC--SCCEETTSBHH-HHHHHHHHHTC
T ss_pred             cceEHHHhhcCC--cceECCCCCHH-HHHHHHHHCCC
Confidence            467999999876  78889999999 79999988764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=89.86  E-value=0.11  Score=30.39  Aligned_cols=47  Identities=13%  Similarity=0.175  Sum_probs=34.2

Q ss_pred             CcCCHHHHHHHHHhh--cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         18 VALKKDEVNIISGAL--EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        18 g~i~~~e~~ml~~~l--~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      |.++.  ++++....  ...+.+|+++|.|   +.+++.++++. ++++.+.+++
T Consensus        51 Givt~--~dl~~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~   99 (136)
T 3lfr_A           51 GVLLA--KDLLPLILKADGDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANH   99 (136)
T ss_dssp             EEEEG--GGGGGGGGSSSGGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHT
T ss_pred             EEEEH--HHHHHHHHhccCCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcC
Confidence            55544  24444333  3467789999976   78999999999 7999988765

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=89.83  E-value=0.24  Score=29.18  Aligned_cols=49  Identities=20%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             CCcCCHHHHHHHHHhhc--------CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGALE--------MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l~--------l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++.  .+++.....        +.+.+|+++|.|  ++.+++.++++. ++++.+.+++
T Consensus        57 ~Givt~--~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~  113 (157)
T 2emq_A           57 HGLISM--TMMMDAILGLERIEFERLETMKVEEVMNR--NIPRLRLDDSLM-KAVGLIVNHP  113 (157)
T ss_dssp             EEEEEH--HHHHHHSBCSSSBCGGGGGTCBGGGTCBC--CCCEEETTSBHH-HHHHHHHHSS
T ss_pred             EEEeeH--HHHHHHHhcccccchHHhcCCcHHHHhCC--CCceecCCCcHH-HHHHHHhhCC
Confidence            356654  345544332        467899999997  678999999999 7999988765

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=89.75  E-value=0.082  Score=33.68  Aligned_cols=33  Identities=9%  Similarity=0.103  Sum_probs=28.3

Q ss_pred             CceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +.+|+++|+|  ++++++.++++. ++++.+.++++
T Consensus        71 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~  103 (213)
T 1vr9_A           71 DSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQE  103 (213)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCC
T ss_pred             CCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhCC
Confidence            4479999998  788999999999 79999888763

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=89.38  E-value=0.13  Score=30.41  Aligned_cols=50  Identities=8%  Similarity=0.106  Sum_probs=36.6

Q ss_pred             CCcCCHHHHHHHHHh---hcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         17 LVALKKDEVNIISGA---LEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~---l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .|.++..  +++...   .++.+.+|+++|+|.  +.+++.++++. ++++.+.++++
T Consensus        74 ~Givt~~--dl~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~  126 (149)
T 3k2v_A           74 IGIFTDG--DLRRVFDTGVDMRDASIADVMTRG--GIRIRPGTLAV-DALNLMQSRHI  126 (149)
T ss_dssp             EEEEEHH--HHHHHHCSSSCCTTCBHHHHSEES--CCEECTTCBHH-HHHHHHHHHTC
T ss_pred             EEEecHH--HHHHHHhcCCCcccCcHHHHcCCC--CeEECCCCCHH-HHHHHHHHcCC
Confidence            4666654  344332   245688999999975  58899999999 79999988763

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=89.35  E-value=0.29  Score=28.05  Aligned_cols=50  Identities=12%  Similarity=0.180  Sum_probs=35.8

Q ss_pred             CCCcCCHHHHHHHHHhhc--CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         16 NLVALKKDEVNIISGALE--MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        16 ~~g~i~~~e~~ml~~~l~--l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      -.|.++..+  ++....+  ..+.+|+++|.|  .+.+++.++++. ++++.+.+++
T Consensus        46 ~~Givt~~d--l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~   97 (133)
T 2ef7_A           46 PVGIITERD--IVKAIGKGKSLETKAEEFMTA--SLITIREDSPIT-GALALMRQFN   97 (133)
T ss_dssp             EEEEEEHHH--HHHHHHTTCCTTCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHT
T ss_pred             EEEEEcHHH--HHHHHhcCCCcccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcC
Confidence            346676554  3332221  236899999987  788999999999 7999988776

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=89.14  E-value=0.11  Score=30.07  Aligned_cols=51  Identities=12%  Similarity=0.179  Sum_probs=35.1

Q ss_pred             CCcCCHHHHHHHHHh----hcCCCceeecceeecc----cEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGA----LEMTQKKVEEIMTKLD----DCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~----l~l~d~~V~eIMtPR~----~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++..+  ++...    +...+.+|+++|+++.    ++.+++.++++. ++++.+.+++
T Consensus        55 ~Givt~~d--l~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~  113 (144)
T 2nyc_A           55 INVYEAYD--VLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKAR  113 (144)
T ss_dssp             EEEEEHHH--HHHHHHTC----CCSBHHHHHHHCC------CEECTTSBHH-HHHHHHHHHT
T ss_pred             EEEEcHHH--HHHHhcccccccCCccHHHHHhcCccccCCCeEECCCCcHH-HHHHHHHHCC
Confidence            46666543  33322    2345789999999874    789999999999 7999988765

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=89.09  E-value=0.15  Score=29.66  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=28.6

Q ss_pred             cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         33 EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        33 ~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ...+.+|+++|.|  .+++++.++++. ++++.+.++++
T Consensus        81 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~  116 (152)
T 4gqw_A           81 KTNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKY  116 (152)
T ss_dssp             ---CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSC
T ss_pred             HhccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCC
Confidence            3456899999998  567899999999 79999988763

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=89.07  E-value=0.13  Score=33.56  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             hcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         32 LEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        32 l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .+....+|+|||++  ++.+++.++++. ++++.+.+.+
T Consensus        15 ~~~~~~~V~dim~~--~~~~v~~~~~v~-~a~~~m~~~~   50 (296)
T 3ddj_A           15 LYFQGMNIETLMIK--NPPILSKEDRLG-SAFKKINEGG   50 (296)
T ss_dssp             CTTCCSSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGG
T ss_pred             hhhcccCHHHhccC--CCcEECCCccHH-HHHHHHHHCC
Confidence            35677899999998  789999999999 6999887765

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=88.94  E-value=0.14  Score=30.59  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=36.7

Q ss_pred             CCcCCHHHHHHHHHhhc--------CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGALE--------MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l~--------l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++.  .+++.....        ..+.+|+++|.|  .+.+++.++++. ++++.+.+++
T Consensus        60 vGivt~--~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~  116 (159)
T 1yav_A           60 HGLIGT--NMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRLHINDPIM-KGFGMVINNG  116 (159)
T ss_dssp             EEEEEH--HHHHHHHBCSSSBCGGGTTTSBHHHHSBC--SCCEEETTSBHH-HHHHHTTTCS
T ss_pred             EEEeEH--HHHHHHhhhhcccchhhhccCCHHHhcCC--CCceEcCCCCHH-HHHHHHHhCC
Confidence            366654  355555443        568899999998  678999999999 6998877654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=88.85  E-value=0.63  Score=28.23  Aligned_cols=48  Identities=8%  Similarity=0.212  Sum_probs=36.5

Q ss_pred             CCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++.  ++++.....-.+.+|+++|   ..+.+++.++++. ++++.+.+++
T Consensus        89 vGivt~--~dl~~~~~~~~~~~v~~im---~~~~~v~~~~~l~-~a~~~m~~~~  136 (172)
T 3lhh_A           89 VGIISA--KQLLSESIAGERLELVDLV---KNCNFVPNSLSGM-ELLEHFRTTG  136 (172)
T ss_dssp             EEEEEH--HHHHHHHHTTCCCCGGGGC---BCCEEEETTCCHH-HHHHHHHHHT
T ss_pred             EEEEEH--HHHHHHHhhcCcccHHHHh---cCCeEeCCCCCHH-HHHHHHHHcC
Confidence            466654  4555555554588999999   4678999999999 6999988765

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=88.82  E-value=0.36  Score=28.26  Aligned_cols=49  Identities=20%  Similarity=0.344  Sum_probs=37.3

Q ss_pred             CCcCCHHHHHHHHHhh--------cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGAL--------EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l--------~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++.  .+++....        ...+.+|+++|.+  ++.+++.++++. ++++.+.+++
T Consensus        61 ~Givt~--~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~  117 (150)
T 3lqn_A           61 HGLIST--AMILDGILGLERIEFERLEEMKVEQVMKQ--DIPVLKLEDSFA-KALEMTIDHP  117 (150)
T ss_dssp             EEEEEH--HHHHHHTBCSSSBCGGGGGGCBGGGTCBS--SCCEEETTCBHH-HHHHHHHHCS
T ss_pred             EEEEEH--HHHHHHHHhhcccchhHHhcCCHHHHhcC--CCceeCCCCCHH-HHHHHHHhCC
Confidence            466654  45665554        2467899999994  678999999999 7999988775

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=88.65  E-value=0.38  Score=28.78  Aligned_cols=34  Identities=12%  Similarity=0.059  Sum_probs=29.3

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ..+.+|+++|+|  .+++++.++++. ++++.+.+++
T Consensus        75 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~  108 (160)
T 2o16_A           75 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHK  108 (160)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTT
T ss_pred             hcccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhC
Confidence            467899999996  789999999999 7999988776

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=88.63  E-value=0.25  Score=27.77  Aligned_cols=49  Identities=16%  Similarity=0.206  Sum_probs=35.6

Q ss_pred             CCCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         16 NLVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        16 ~~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      -.|.++..  +++.... -...+|+++|.|  ++..++.++++. ++++.+.+++
T Consensus        44 ~~G~vt~~--dl~~~~~-~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~   92 (122)
T 3kpb_A           44 LVGIITSW--DIAKALA-QNKKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYN   92 (122)
T ss_dssp             EEEEECHH--HHHHHHH-TTCCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHT
T ss_pred             EEEEEEHH--HHHHHHH-hcccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhC
Confidence            34667654  3443333 345589999987  678899999999 7999988775

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=88.34  E-value=0.35  Score=29.02  Aligned_cols=51  Identities=12%  Similarity=0.116  Sum_probs=37.8

Q ss_pred             CCCcCCHHHHHHHHHhh----cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         16 NLVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        16 ~~g~i~~~e~~ml~~~l----~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      -.|.++..  +++..+.    ...+.+|+++|.+  ++.+++.++++. ++++.+.++++
T Consensus        70 ~~Givt~~--dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~  124 (165)
T 3fhm_A           70 VLGIFTER--DLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRF  124 (165)
T ss_dssp             EEEEEEHH--HHHHHHHHHGGGGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTC
T ss_pred             EEEEEEHH--HHHHHHHhcCCccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            34677654  3433332    5678999999994  678899999999 79999988763

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=88.16  E-value=0.084  Score=38.54  Aligned_cols=43  Identities=12%  Similarity=0.040  Sum_probs=35.0

Q ss_pred             CHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         21 KKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        21 ~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+++.+++.++     ++++++|+  .++++++.+.++. ++++.+.+++|
T Consensus        78 ~e~qa~~V~~V-----k~~~~~m~--~d~v~v~~~~tv~-ea~~~m~~~~~  120 (496)
T 4fxs_A           78 IEQQAAQVHQV-----KIFEAGVV--THPVTVRPEQTIA-DVMELTHYHGF  120 (496)
T ss_dssp             HHHHHHHHHHH-----HHCCC--C--BCCCCBCSSSBHH-HHHHHHTSSCC
T ss_pred             HHHHHHHHHhc-----cccccccc--cCceEECCCCCHH-HHHHHHHHcCC
Confidence            56778999998     66789999  6889999999999 79999988775

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=88.09  E-value=0.079  Score=30.52  Aligned_cols=50  Identities=12%  Similarity=0.209  Sum_probs=36.9

Q ss_pred             CCCcCCHHHHHHHHHhh----cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         16 NLVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        16 ~~g~i~~~e~~ml~~~l----~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      -.|.++..  +++..++    ...+.+|+++|.|  .+.+++.++++. ++++.+.+++
T Consensus        51 ~~Givt~~--dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~  104 (133)
T 1y5h_A           51 LHGMLTDR--DIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQ  104 (133)
T ss_dssp             EEEEEEHH--HHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHT
T ss_pred             EEEEEeHH--HHHHHHHhcCCCccccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcC
Confidence            34666654  4443232    3457899999987  788999999999 7999988776

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=87.60  E-value=0.36  Score=27.79  Aligned_cols=32  Identities=9%  Similarity=0.174  Sum_probs=27.6

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .+.+|+++|.|   +++++.++++. ++++.+.+++
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~   98 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASR   98 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSS
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcC
Confidence            57789999976   78999999999 7999988765

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=87.46  E-value=0.73  Score=27.68  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=29.4

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ....+|+++|.+  ++.+++.++++. ++++.+.+++
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~  138 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLG  138 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHT
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHH-HHHHHHHhCC
Confidence            467899999986  588999999999 7999988776

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=87.02  E-value=0.63  Score=26.70  Aligned_cols=48  Identities=13%  Similarity=0.136  Sum_probs=35.2

Q ss_pred             CCcCCHHHHHHHHHhhc-CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGALE-MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l~-l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++..  +++....+ ..+.+|+++|.|   +++++.++++. ++++.+.+++
T Consensus        53 ~Givt~~--dl~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~  101 (130)
T 3i8n_A           53 IGFVHRL--ELFKMQQSGSGQKQLGAVMRP---IQVVLNNTALP-KVFDQMMTHR  101 (130)
T ss_dssp             EEECCHH--HHHHHHHTTTTTSBHHHHSEE---CCEEETTSCHH-HHHHHHHHHT
T ss_pred             EEEEEHH--HHHHHHhcCCCcCCHHHHhcC---CcCcCCCCcHH-HHHHHHHHcC
Confidence            4677654  44444332 247899999965   68999999999 6999988765

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=86.89  E-value=0.33  Score=29.72  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=27.9

Q ss_pred             ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+|+++|++  ++++++.++++. ++++.+.++++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~   40 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHL   40 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTC
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            789999984  799999999999 79999887664

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=86.62  E-value=0.85  Score=26.93  Aligned_cols=48  Identities=17%  Similarity=0.127  Sum_probs=35.9

Q ss_pred             CCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++..  +++.....-.+.+|+++|   ..+.+++.++++. ++++.+.+++
T Consensus        68 vGivt~~--dl~~~~~~~~~~~v~~~m---~~~~~v~~~~~l~-~~~~~m~~~~  115 (153)
T 3oco_A           68 IGYAYNY--DIVRQARIDDKAKISTIM---RDIVSVPENMKVP-DVMEEMSAHR  115 (153)
T ss_dssp             EEEEEHH--HHHHHHHHHTTSBGGGTC---BCCEEEETTSBHH-HHHHHHHHTT
T ss_pred             EEEEEHH--HHHhHHhcCCCCcHHHHh---CCCeEECCCCCHH-HHHHHHHHcC
Confidence            4666654  444444433488999999   3688999999999 6999988776

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=86.44  E-value=0.76  Score=26.86  Aligned_cols=48  Identities=13%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             CCcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++..  +++....+-.+.+|+++|   ..+.+++.++++. ++++.+.+++
T Consensus        70 vGivt~~--dl~~~~~~~~~~~v~~~m---~~~~~v~~~~~l~-~~~~~m~~~~  117 (148)
T 3lv9_A           70 LGFVHIR--DLYNQKINENKIELEEIL---RDIIYISENLTID-KALERIRKEK  117 (148)
T ss_dssp             EEEEEHH--HHHHHHHHHSCCCGGGTC---BCCEEEETTSBHH-HHHHHHHHHT
T ss_pred             EEEEEHH--HHHHHHhcCCCccHHHhc---CCCeEECCCCCHH-HHHHHHHhcC
Confidence            4666654  444444333388999999   3578999999999 6999988765

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=86.05  E-value=0.33  Score=31.98  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=32.3

Q ss_pred             cCCCceeecceeecc----cEEEeeCCCCccHHHHHHHHHcC
Q psy17076         33 EMTQKKVEEIMTKLD----DCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        33 ~l~d~~V~eIMtPR~----~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      +..+.+|+++|+++.    .+++++.++++. ++++.+.+++
T Consensus       252 ~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~  292 (323)
T 3t4n_C          252 NDLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKAR  292 (323)
T ss_dssp             HHTTSBHHHHGGGSCTTCCCCEEECTTCBHH-HHHHHHHHSC
T ss_pred             hhccCCHHHHHhhccccCCCCEEECCCCCHH-HHHHHHHHhC
Confidence            344779999999987    899999999999 7999998876

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=85.60  E-value=0.24  Score=35.68  Aligned_cols=42  Identities=7%  Similarity=0.229  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         22 KDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        22 ~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +++++++.+++++++     +|+  .++++++.+.++. ++++.+.+++|
T Consensus        83 e~~~~~I~~v~~~~~-----~m~--~~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           83 EEQVEQVKRVKRAER-----LIV--EDVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             HHHHHHHHHHHTCC------------------------------------
T ss_pred             HHHHHHHHhhcchhh-----ccc--cCceEECCCCCHH-HHHHHHHHcCC
Confidence            577899999998865     687  5899999999999 69998887654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=85.49  E-value=1  Score=25.95  Aligned_cols=48  Identities=10%  Similarity=0.184  Sum_probs=34.7

Q ss_pred             CCcCCHHHHHHHHHhhc--CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         17 LVALKKDEVNIISGALE--MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        17 ~g~i~~~e~~ml~~~l~--l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .|.++..  +++....+  ..+.+|+++|.+  .+.+++.+ ++. ++++.+.+++
T Consensus        51 ~Givt~~--dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~-~l~-~a~~~m~~~~  100 (141)
T 2rih_A           51 VAVVSER--DILRAVAQRLDLDGPAMPIANS--PITVLDTD-PVH-VAAEKMRRHN  100 (141)
T ss_dssp             EEEEEHH--HHHHHHHTTCCTTSBSGGGCBC--CCEEETTS-BHH-HHHHHHHHHT
T ss_pred             EEEEEHH--HHHHHHhcCCCCCCCHHHHcCC--CCeEEcCC-CHH-HHHHHHHHcC
Confidence            4667654  44443222  236899999987  68899999 999 6999988775

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=85.12  E-value=0.26  Score=35.74  Aligned_cols=35  Identities=6%  Similarity=-0.039  Sum_probs=29.9

Q ss_pred             CCCceeecceeecccEEEeeCC-CCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIE-TILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~-~~l~~~~~~~i~~sgh   71 (71)
                      |.+.+|+++|++  ++++++.+ +++. ++++.+.++++
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~  416 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRV  416 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTC
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCC
Confidence            457899999984  78899999 9999 79999988764

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=85.00  E-value=0.34  Score=28.98  Aligned_cols=32  Identities=13%  Similarity=0.187  Sum_probs=27.9

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .+.+|+++|.|   +++++.++++. ++++.+.+++
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~  132 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQR  132 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTT
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcC
Confidence            57789999976   78999999999 7999988775

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=84.60  E-value=0.19  Score=36.61  Aligned_cols=35  Identities=20%  Similarity=0.162  Sum_probs=0.0

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .+.+|+++|+|+.++++++.+.++. ++++.+.+++
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~  179 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENR  179 (490)
T ss_dssp             ------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcC
Confidence            4567999999998999999999999 6998887664

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=84.47  E-value=0.37  Score=27.73  Aligned_cols=36  Identities=14%  Similarity=0.159  Sum_probs=29.4

Q ss_pred             cCCCceeec---ceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         33 EMTQKKVEE---IMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        33 ~l~d~~V~e---IMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ++-++++++   +|+  .++++++.++++. ++++.+.++++
T Consensus         4 ~~~~~~v~~~~~~~~--~~~~~v~~~~~~~-~a~~~~~~~~~   42 (144)
T 2nyc_A            4 HFLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRV   42 (144)
T ss_dssp             GGGGSBGGGSSCCBC--SSCCCBCTTSBHH-HHHHHHHHHTC
T ss_pred             chhhcchhhcCCCCC--CCceEECCCCcHH-HHHHHHHHcCc
Confidence            456788899   665  6799999999999 79999887764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=84.15  E-value=0.46  Score=27.20  Aligned_cols=32  Identities=3%  Similarity=0.156  Sum_probs=27.3

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .+.+|+++|.|   .++++.++++. ++++.+.+++
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~   98 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQR   98 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTT
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcC
Confidence            57789999966   57899999999 6999988775

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=84.15  E-value=0.42  Score=30.58  Aligned_cols=33  Identities=18%  Similarity=0.096  Sum_probs=28.3

Q ss_pred             CceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ..+|++||++  ++.+++.++++. ++++.+.++++
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~   38 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNL   38 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTC
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCC
Confidence            4689999975  588999999999 79999988764

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=84.14  E-value=0.2  Score=36.42  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=0.0

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .+.+|+++|+|..++++++.+.++. ++++.+.+++
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~  193 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKK  193 (503)
T ss_dssp             ------------------------------------
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcC
Confidence            3567999999999999999999999 6998887664

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=83.74  E-value=0.24  Score=30.02  Aligned_cols=34  Identities=15%  Similarity=0.222  Sum_probs=29.4

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ....+|+++|++  .+++++.++++. ++++.+.++|
T Consensus       102 ~~~~~v~~im~~--~~~tv~~~~~l~-~a~~~m~~~~  135 (170)
T 4esy_A          102 GRKLTASAVMTQ--PVVTAAPEDSVG-SIADQMRRHG  135 (170)
T ss_dssp             HTTCBHHHHCBC--CSCCBCTTSBHH-HHHHHHHHTT
T ss_pred             ccccchhhhccc--CcccCCcchhHH-HHHHHHHHcC
Confidence            456799999986  678999999999 7999998876

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=83.31  E-value=0.61  Score=25.11  Aligned_cols=34  Identities=35%  Similarity=0.369  Sum_probs=22.2

Q ss_pred             eecccCCCcCCHHHHHHHHHh----hcCCCceeecceeec
Q psy17076         11 MEATSNLVALKKDEVNIISGA----LEMTQKKVEEIMTKL   46 (71)
Q Consensus        11 ~~~~~~~g~i~~~e~~ml~~~----l~l~d~~V~eIMtPR   46 (71)
                      ++.+.--|.+++  ++++..+    .++.+.+|++||+|-
T Consensus        29 ~d~~~lvGIvT~--~Di~~~~~~~~~~~~~~~V~~iMt~~   66 (70)
T 3ghd_A           29 MEGDEILGVVTE--RDILDKVVAKGKNPKEVKVEEIMTKN   66 (70)
T ss_dssp             EETTEEEEEEEH--HHHHHHTTTTTCCGGGCBGGGTCEEC
T ss_pred             EECCEEEEEEEH--HHHHHHHHhcCCCcccCCHHHhcCCC
Confidence            333334466764  5565544    456788999999985

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=81.26  E-value=0.3  Score=31.37  Aligned_cols=31  Identities=16%  Similarity=0.201  Sum_probs=16.3

Q ss_pred             eeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +|+++|+  .++++++.++++. ++++.+.++++
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~-~a~~~~~~~~~   32 (282)
T 2yzq_A            2 RVKTIMT--QNPVTITLPATRN-YALELFKKYKV   32 (282)
T ss_dssp             BHHHHSE--ESCCCEESSCC-------------C
T ss_pred             chHHhcc--CCCeEECCCCcHH-HHHHHHHHcCC
Confidence            6889999  4788899999999 69998887664

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=80.49  E-value=0.6  Score=29.90  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=29.0

Q ss_pred             cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         33 EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        33 ~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ...+.+|+++|++  ++++++.++++. ++++.+.+.+
T Consensus       217 ~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~  251 (282)
T 2yzq_A          217 QLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYS  251 (282)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHT
T ss_pred             hhccCCHHHhcCC--CCceeCCCCCHH-HHHHHHHHcC
Confidence            3467899999986  789999999999 6999988765

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=80.08  E-value=0.21  Score=36.45  Aligned_cols=35  Identities=14%  Similarity=0.101  Sum_probs=24.3

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .+..|+++|+|+.++++++.+.++. ++++.+.+++
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~  181 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKAR  181 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcC
Confidence            5678999999999999999999999 6887766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	97.99
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.86
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.21
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	96.31
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	95.85
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	95.79
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	95.26
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	94.89
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	94.62
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	94.44
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	94.29
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	94.17
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	93.18
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	92.39
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	91.69
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	91.64
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	91.24
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	90.97
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	90.92
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	90.64
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	89.0
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	88.42
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	86.91
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	86.74
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	86.48
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	86.22
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	86.11
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	85.71
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	85.49
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	85.48
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	81.19
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	81.18

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=97.99  E-value=8e-07  Score=52.33  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=33.2

Q ss_pred             CceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         36 QKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        36 d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |++|+++|+|..+|++++.+.++. ++++.+.++||
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~   35 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGY   35 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCC
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCC
Confidence            679999999999999999999999 79999999986

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.86  E-value=1.5e-06  Score=53.01  Aligned_cols=51  Identities=6%  Similarity=0.135  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHhhcC-CCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         20 LKKDEVNIISGALEM-TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        20 i~~~e~~ml~~~l~l-~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |++.++.+++.+.+| .++++.|+|+|..++++++.+.++. +++..+.++|+
T Consensus         2 ~~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i   53 (179)
T d2ooxe1           2 VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNI   53 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCC
Confidence            456788999999997 9999999999999999999999999 79999998875

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=4.5e-05  Score=45.29  Aligned_cols=37  Identities=11%  Similarity=0.241  Sum_probs=34.0

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |..++|.|+|+|..++++++.++++. ++++.+.++|+
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~   46 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGV   46 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTC
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCC
Confidence            46889999999999999999999999 79999998875

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=96.31  E-value=0.00057  Score=39.87  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=31.1

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      -.+.+|+|||++  ++.+++.++++. ++++.+.+++|
T Consensus         8 ~~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~   42 (160)
T d2d4za3           8 KYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKL   42 (160)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCC
T ss_pred             ccceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCC
Confidence            357799999995  899999999999 79999999875

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.85  E-value=0.0021  Score=36.82  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=30.8

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |.+..|+++|++  ++++++.++++. ++++.+.++++
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~   35 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNI   35 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTC
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCC
Confidence            568899999976  799999999999 79999988764

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.79  E-value=0.00099  Score=38.43  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=28.2

Q ss_pred             eeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +|+++|+|+  +++++.++++. ++++.+.++||
T Consensus         3 ~V~~iMt~~--v~~v~~~~tl~-~a~~~m~~~~~   33 (141)
T d3ddja1           3 PVKVFMSTK--VQTIYKEVRLD-QAVKLMLRRGF   33 (141)
T ss_dssp             BHHHHSBCS--CCCEETTSBHH-HHHHHHHHHTC
T ss_pred             eeHHhCcCC--CeEEcCcCcHH-HHHHHHHHcCC
Confidence            689999994  89999999999 79999998875

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=95.26  E-value=0.0014  Score=37.61  Aligned_cols=34  Identities=6%  Similarity=0.156  Sum_probs=30.2

Q ss_pred             ceeecceeec-ccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKL-DDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR-~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +||++||+++ .++++++.++++. ++++.+.++++
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~   36 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNI   36 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCC
Confidence            5899999987 4899999999999 79999998764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.89  E-value=0.0036  Score=35.54  Aligned_cols=32  Identities=9%  Similarity=0.085  Sum_probs=28.1

Q ss_pred             ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +||+|+|++  ++++++.++++. ++++.+.++|+
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~   32 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDI   32 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCC
Confidence            589999986  699999999999 79999988774

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.62  E-value=0.0048  Score=34.91  Aligned_cols=31  Identities=29%  Similarity=0.522  Sum_probs=27.5

Q ss_pred             eeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .|+|+|++  ++++++.++++. ++++.+.++|+
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~   31 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAK   31 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCC
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCc
Confidence            47899997  889999999999 79999988875

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=94.44  E-value=0.0067  Score=35.02  Aligned_cols=32  Identities=25%  Similarity=0.135  Sum_probs=28.2

Q ss_pred             ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+|+|+|+|  ++.+++.++++. ++++.+.++++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~   33 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDI   33 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTC
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCC
Confidence            479999997  789999999999 79999988774

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.0051  Score=36.53  Aligned_cols=35  Identities=11%  Similarity=0.045  Sum_probs=28.1

Q ss_pred             CceeecceeecccE----EEeeCCCCccHHHHHHHHHcCC
Q psy17076         36 QKKVEEIMTKLDDC----YMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        36 d~~V~eIMtPR~~v----~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      ...|+|||+|+...    +.++.++++. ++++.+.+++|
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~   40 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTY   40 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCC
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCC
Confidence            35789999998654    5567788999 79999998875

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.17  E-value=0.0061  Score=34.70  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=27.2

Q ss_pred             eeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +|+++|+|  +..+++.++++. ++++.+.+.|+
T Consensus         2 ~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~   32 (135)
T d3ddja2           2 NIETLMIK--NPPILSKEDRLG-SAFKKINEGGI   32 (135)
T ss_dssp             SGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGC
T ss_pred             EeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCC
Confidence            68999998  688899999999 79999988774

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.18  E-value=0.0085  Score=33.97  Aligned_cols=31  Identities=16%  Similarity=0.207  Sum_probs=16.8

Q ss_pred             eeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +|+++|+|  +.++++.++++. ++++.+.++++
T Consensus         2 ~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~   32 (122)
T d2yzqa2           2 RVKTIMTQ--NPVTITLPATRN-YALELFKKYKV   32 (122)
T ss_dssp             BHHHHSEE--SCCCEESSCC-------------C
T ss_pred             CcccccCC--CCEEECCcCcHH-HHHHHHHHcCC
Confidence            68999998  688999999999 69999887664

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.39  E-value=0.021  Score=32.07  Aligned_cols=63  Identities=11%  Similarity=0.184  Sum_probs=44.2

Q ss_pred             hccceeeecccCCCcCCHHH-HHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076          5 FKTGIPMEATSNLVALKKDE-VNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus         5 ~~~l~~~~~~~~~g~i~~~e-~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      +..++=.+.+.-.|.++..+ ...+..-..+.+..|+++|.+  ++.+++.+.++. ++++.+.+++
T Consensus        31 ~~~~~V~~~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~   94 (120)
T d1pbja3          31 KGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNV   94 (120)
T ss_dssp             CCEEEEEETTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHT
T ss_pred             ceEEEEEeCCcEEEEEEeeeccccccccccccceeEeeeccc--ccccccchhHHH-HHHHHHHHcC
Confidence            33444444455557776654 233444456788899999975  678899999999 6999988876

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=91.69  E-value=0.015  Score=33.84  Aligned_cols=30  Identities=13%  Similarity=0.193  Sum_probs=26.1

Q ss_pred             eeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ||..||+|  ++++++.++++. ++++.+.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~   31 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAA   31 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhc
Confidence            68899998  799999999999 7999886654

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.64  E-value=0.058  Score=30.23  Aligned_cols=32  Identities=13%  Similarity=0.220  Sum_probs=27.0

Q ss_pred             ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+|+|+|++  +..+++.++++. ++++.+.++++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~   32 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRV   32 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCC
Confidence            378999964  789999999999 79999988753

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.24  E-value=0.045  Score=31.05  Aligned_cols=32  Identities=9%  Similarity=0.026  Sum_probs=28.1

Q ss_pred             ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+|+++|+  .++.+++.++++. ++++.+.++|+
T Consensus         5 ~pV~~im~--~~~~~v~~~~t~~-~a~~~m~~~~~   36 (132)
T d2yzia1           5 APIKVYMT--KKLLGVKPSTSVQ-EASRLMMEFDV   36 (132)
T ss_dssp             SBGGGTCB--CCCCEECTTSBHH-HHHHHHHHHTC
T ss_pred             CcHHHHcC--CCCeEECCcCcHH-HHHHHHHHcCC
Confidence            47999997  4899999999999 79999998774

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.97  E-value=0.028  Score=32.19  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             CCCceeecceee-cccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTK-LDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtP-R~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |-.+++++++++ ..++++++.++++. ++++.+.++++
T Consensus         6 f~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~   43 (145)
T d2v8qe1           6 FMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRV   43 (145)
T ss_dssp             GGGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCC
T ss_pred             HhhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCC
Confidence            446788999887 46899999999999 79999998875

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.92  E-value=0.047  Score=31.44  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=27.7

Q ss_pred             ceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         37 KKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        37 ~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .+|+|+|+|  ++.+++.++++. ++++.+.++++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~   34 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHL   34 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTC
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCC
Confidence            478999985  688999999999 79999988764

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.64  E-value=0.044  Score=31.49  Aligned_cols=35  Identities=9%  Similarity=0.070  Sum_probs=30.3

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      |++.+|+++|.  .++++++.++++. ++++.+.++++
T Consensus         1 ~~~~~v~~~m~--r~v~~v~~~~~l~-~a~~~m~~~~~   35 (156)
T d2yzqa1           1 YKGVEIEPYYQ--RYVSIVWEGTPLK-AALKALLLSNS   35 (156)
T ss_dssp             GGGCBSTTTSB--SCCCCEETTSBHH-HHHHHHHTCSS
T ss_pred             CCCCCHHHHhc--CCCeEECCcCcHH-HHHHHHHHcCC
Confidence            46789999995  4599999999999 79999998874

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.00  E-value=0.07  Score=30.83  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=29.4

Q ss_pred             eeecceee-cccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         38 KVEEIMTK-LDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        38 ~V~eIMtP-R~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      .++++|++ +.++++++.++++. ++++.+.+++|
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~   35 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNI   35 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCc
Confidence            46788888 78999999999999 79999998875

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.42  E-value=0.23  Score=27.84  Aligned_cols=51  Identities=22%  Similarity=0.273  Sum_probs=37.3

Q ss_pred             cCCCcCCHHHHHHHHHhhc---CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         15 SNLVALKKDEVNIISGALE---MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        15 ~~~g~i~~~e~~ml~~~l~---l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .-.|.++.  .+++..++.   ..+.+|+++|+|  ++.+++.++++. ++++.+.+++
T Consensus        47 ~~~Giit~--~di~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~  100 (132)
T d2yzia1          47 NVVGFFTK--SDIIRRVIVPGLPYDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHR  100 (132)
T ss_dssp             CEEEEEEH--HHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHT
T ss_pred             eeeeeeeH--HHHHHHHhhccCccceeEeecccc--cccccCcchHHH-HHHHHHHHcC
Confidence            33466654  455554443   345789999986  688999999999 7999988776

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.91  E-value=0.082  Score=29.89  Aligned_cols=30  Identities=10%  Similarity=0.151  Sum_probs=26.0

Q ss_pred             eeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ||..||++  ++++++.++++. ++++.+.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~   31 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQA   31 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhc
Confidence            67889987  889999999999 7999987764

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=86.74  E-value=0.056  Score=30.35  Aligned_cols=50  Identities=22%  Similarity=0.128  Sum_probs=25.3

Q ss_pred             CcCCHHHHHHHHHhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         18 VALKKDEVNIISGALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        18 g~i~~~e~~ml~~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      |.++.  +++....-.-.+..+.++|+++.++++++.++++. ++++.+.+++
T Consensus        44 GivT~--~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~   93 (120)
T d1jr1a4          44 GIISS--RDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSK   93 (120)
T ss_dssp             ------------------------CCSBTTTSCCEETTCCHH-HHHHHTCSCC
T ss_pred             eeeee--eeeeehhccccCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcC
Confidence            66664  34433333344678999999999999999999999 6998887665

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.48  E-value=0.12  Score=29.57  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=29.3

Q ss_pred             hcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         32 LEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        32 l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ..+.+.+|+++|+|  ++.+++.++++. ++++.+.++|
T Consensus        94 ~~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~  129 (156)
T d2yzqa1          94 LQLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYS  129 (156)
T ss_dssp             ---CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHT
T ss_pred             hcccCCEeehhccc--CceEECcccccH-HHHHHHHHcC
Confidence            34678899999987  588899999999 7999998876

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.22  E-value=0.042  Score=30.79  Aligned_cols=51  Identities=12%  Similarity=0.214  Sum_probs=37.8

Q ss_pred             cCCCcCCHHHHHHHH----HhhcCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         15 SNLVALKKDEVNIIS----GALEMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        15 ~~~g~i~~~e~~ml~----~~l~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      .-.|.++..  +++.    .-.+.....++++|+|  .+++++.++++. ++++.+.+++
T Consensus        43 ~~~Giit~~--Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~   97 (123)
T d1y5ha3          43 RLHGMLTDR--DIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQ   97 (123)
T ss_dssp             BEEEEEEHH--HHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHT
T ss_pred             hhhhhhhhh--hHhhhhhhcCCCcccceEEEEeec--cceeeeecchHH-HHHHHHHHcC
Confidence            345666553  4443    4445667889999975  788999999999 7999998876

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=0.25  Score=28.66  Aligned_cols=33  Identities=15%  Similarity=0.208  Sum_probs=28.0

Q ss_pred             CCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         35 TQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        35 ~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      ....|+++|+|  .+++++.++++. ++++.+.+.|
T Consensus        98 ~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~  130 (169)
T d2j9la1          98 PTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLG  130 (169)
T ss_dssp             CCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHT
T ss_pred             cccchhhhccC--CCEEECCCCcHH-HHHHHHHhcC
Confidence            46779999997  578999999999 6999887765

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=85.71  E-value=0.2  Score=27.70  Aligned_cols=31  Identities=16%  Similarity=0.259  Sum_probs=27.0

Q ss_pred             eeecceeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         38 KVEEIMTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        38 ~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      +|+++|++  ++.+++.++++. ++++.+.+.++
T Consensus         2 ~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~   32 (121)
T d1vr9a3           2 KVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQT   32 (121)
T ss_dssp             BGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTS
T ss_pred             CchhhhcC--CCeEECCCCCHH-HHHHhhhhcCc
Confidence            68899995  788999999999 79999988764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.49  E-value=0.4  Score=27.18  Aligned_cols=50  Identities=14%  Similarity=0.167  Sum_probs=37.1

Q ss_pred             CCCcCCHHHHHHHHHhh----cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         16 NLVALKKDEVNIISGAL----EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        16 ~~g~i~~~e~~ml~~~l----~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      --|.++.  ++++...+    ...+.+|+++|++  ++++++.+.++. ++++.+.+++
T Consensus        46 ~~Giit~--~di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~   99 (142)
T d1pvma4          46 DVGLLSE--RSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENG   99 (142)
T ss_dssp             EEEEEEH--HHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHT
T ss_pred             ccceEEe--echhhhhhhhccccccccccccccc--ccccccchhhHH-HHHHHHHHcC
Confidence            3456644  45554433    4567789999984  679999999999 7999998876

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.48  E-value=0.15  Score=28.87  Aligned_cols=36  Identities=11%  Similarity=0.139  Sum_probs=30.4

Q ss_pred             CCceeecc-eeecccEEEeeCCCCccHHHHHHHHHcCC
Q psy17076         35 TQKKVEEI-MTKLDDCYMLDIETILNFTVISEIVRTGE   71 (71)
Q Consensus        35 ~d~~V~eI-MtPR~~v~~l~~~~~l~~~~~~~i~~sgh   71 (71)
                      -.++++|+ +.+..++++++.++++. ++++.+.++++
T Consensus         4 ~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~   40 (140)
T d2nyca1           4 LKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRV   40 (140)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTC
T ss_pred             ccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCC
Confidence            35778887 67789999999999999 79999988774

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=81.19  E-value=0.37  Score=27.15  Aligned_cols=34  Identities=12%  Similarity=0.059  Sum_probs=28.7

Q ss_pred             CCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         34 MTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        34 l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      +.+.+|+++|++  ++.+++.++++. +++..+.+++
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~  105 (139)
T d2o16a3          72 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHK  105 (139)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTT
T ss_pred             ccccchhHhhcc--ccccccccchHH-HHHHHHHHcC
Confidence            567789999974  789999999999 7999988875

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=81.18  E-value=0.26  Score=27.53  Aligned_cols=48  Identities=21%  Similarity=0.275  Sum_probs=34.8

Q ss_pred             CcCCHHHHHHHHHhh--------cCCCceeecceeecccEEEeeCCCCccHHHHHHHHHcC
Q psy17076         18 VALKKDEVNIISGAL--------EMTQKKVEEIMTKLDDCYMLDIETILNFTVISEIVRTG   70 (71)
Q Consensus        18 g~i~~~e~~ml~~~l--------~l~d~~V~eIMtPR~~v~~l~~~~~l~~~~~~~i~~sg   70 (71)
                      |.++.  ++++...+        ...+.+|+++|.+  ++.+++.++++. +++..+.+++
T Consensus        49 Giit~--~di~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~  104 (132)
T d1yava3          49 GLIGT--NMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRLHINDPIM-KGFGMVINNG  104 (132)
T ss_dssp             EEEEH--HHHHHHHBCSSSBCGGGTTTSBHHHHSBC--SCCEEETTSBHH-HHHHHTTTCS
T ss_pred             cEEEc--chhHHHhhccccccccccccccccccccc--cccccccchhHH-HHHHHHHhCC
Confidence            55543  45555544        3557789999975  788999999999 6998876654