Psyllid ID: psy17087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MNHPNDHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Secondary Structure (PSIPRED)
ccccccccccccccccEEEccccccccccccccEEEEEEcccccEEEEEEEEEccccccccccEEEEEccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEccHHHEccccccEccccccccEEEEEEccEcEEEEEEEEEccccccccccccEEEHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mnhpndhkgdisvtETKFLvfpgkdscngdsggplvwknndtrkhYLIGLvsygtpecgigspgiyTRITAYLPWIIARMAYEV
Flexible Loop (DISEMBL)
mnhpndhkgdisvTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Low Complexity Region (SEG)
MNHPNDHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Disordered region (IsUnstruct)
*************TETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY**
Disordered Region (DISOPRED)
*******KGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA***
Disordered Region (DISEMBL)
*********DISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Disordered Region (DISPRO)
*****DHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNHPNDHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q5U405	543	Transmembrane protease se	yes	N/A	0.714	0.110	0.5	2e-10
Q5E9Z2	558	Hyaluronan-binding protei	no	N/A	0.892	0.134	0.455	6e-10
Q9BYE2	581	Transmembrane protease se	yes	N/A	0.666	0.096	0.5	6e-10
O60235	418	Transmembrane protease se	no	N/A	0.619	0.124	0.527	1e-09
Q9JJS8	685	Mannan-binding lectin ser	no	N/A	0.630	0.077	0.535	1e-09
Q14520	560	Hyaluronan-binding protei	no	N/A	0.880	0.132	0.448	2e-09
Q91WP0	685	Mannan-binding lectin ser	no	N/A	0.642	0.078	0.490	2e-09
Q8K0D2	558	Hyaluronan-binding protei	no	N/A	0.892	0.134	0.443	3e-09
Q6L711	558	Hyaluronan-binding protei	no	N/A	0.892	0.134	0.443	3e-09
Q8VCA5	435	Transmembrane protease se	no	N/A	0.607	0.117	0.5	3e-09

>sp|Q5U405|TMPSD_MOUSE Transmembrane protease serine 13 OS=Mus musculus GN=Tmprss13 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 82
           G+DSC GDSGGPLV + N+  + YL G+ S+GT       PG+YT++T  LPWI  +M  
Sbjct: 479 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWIYRKMES 536

Query: 83  EV 84
           EV
Sbjct: 537 EV 538

Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q5E9Z2|HABP2_BOVIN Hyaluronan-binding protein 2 OS=Bos taurus GN=HABP2 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 4/79 (5%)

Query: 6   DHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGI 65
           DH  D ++     L  PG+DSC GDSGGPL  + + T   Y+ G+VS+G  ECG   PG+
Sbjct: 482 DHSIDDNMICAGNLQKPGQDSCQGDSGGPLTCEKDGTS--YIYGIVSWGL-ECG-KRPGV 537

Query: 66  YTRITAYLPWIIARMAYEV 84
           YT++T +L WI A M  E 
Sbjct: 538 YTQVTKFLTWIKATMEKEA 556

Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and 'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate) prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator (pro-urokinase) to the active two chain form. Activates coagulation factor VII.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9BYE2|TMPSD_HUMAN Transmembrane protease serine 13 OS=Homo sapiens GN=TMPRSS13 PE=2 SV=3

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G+DSC GDSGGPLV + N+  + YL G+ S+GT       PG+YT++T  LPWI ++M
Sbjct: 498 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTGCGQRNKPGVYTKVTEVLPWIYSKM 553

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O60235|TM11D_HUMAN Transmembrane protease serine 11D OS=Homo sapiens GN=TMPRSS11D PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 3/55 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G D+C GDSGGPLV + +  R  +++G+VS+G  +CG+   PG+YTR+TAYL WI
Sbjct: 360 GVDACQGDSGGPLV-QEDSRRLWFIVGIVSWGD-QCGLPDKPGVYTRVTAYLDWI 412

May play some biological role in the host defense system on the mucous membrane independently of or in cooperation with other substances in airway mucous or bronchial secretions.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9JJS8|MASP2_RAT Mannan-binding lectin serine protease 2 OS=Rattus norvegicus GN=Masp2 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 44/56 (78%), Gaps = 3/56 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP--GIYTRITAYLPWI 76
           GKDSC GDSGG LV+ +N+T++ ++ G+VS+G+  CG GS   G+YT++T Y+PWI
Sbjct: 624 GKDSCRGDSGGALVFLDNETQRWFVGGIVSWGSINCG-GSEQYGVYTKVTNYIPWI 678

Serum protease that plays an important role in the activation of the complement system via mannose-binding lectin. After activation by auto-catalytic cleavage it cleaves C2 and C4, leading to their activation and to the formation of C3 convertase.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q14520|HABP2_HUMAN Hyaluronan-binding protein 2 OS=Homo sapiens GN=HABP2 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 6   DHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGI 65
           DH  D S+     L  PG+D+C GDSGGPL  + + T  +Y+ G+VS+G  ECG   PG+
Sbjct: 484 DHMIDDSMICAGNLQKPGQDTCQGDSGGPLTCEKDGT--YYVYGIVSWGL-ECG-KRPGV 539

Query: 66  YTRITAYLPWIIARMAYE 83
           YT++T +L WI A +  E
Sbjct: 540 YTQVTKFLNWIKATIKSE 557

Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and 'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate) prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator (pro-urokinase) to the active two chain form. Activates coagulation factor VII.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q91WP0|MASP2_MOUSE Mannan-binding lectin serine protease 2 OS=Mus musculus GN=Masp2 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP-GIYTRITAYLPWI 76
           GKDSC GDSGG LV+ +N+T++ ++ G+VS+G+  CG     G+YT++  Y+PWI
Sbjct: 624 GKDSCRGDSGGALVFLDNETQRWFVGGIVSWGSINCGAADQYGVYTKVINYIPWI 678

Serum protease that plays an important role in the activation of the complement system via mannose-binding lectin. After activation by auto-catalytic cleavage it cleaves C2 and C4, leading to their activation and to the formation of C3 convertase.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus musculus GN=Habp2 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 6   DHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGI 65
           DH  D S+     L  PG D+C GDSGGPL  + + T  +Y+ G+VS+G  ECG   PG+
Sbjct: 482 DHTIDDSMICAGNLQKPGSDTCQGDSGGPLTCEKDGT--YYVYGIVSWGQ-ECG-KKPGV 537

Query: 66  YTRITAYLPWIIARMAYEV 84
           YT++T +L WI   M  E 
Sbjct: 538 YTQVTKFLNWIKTTMHREA 556

Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and 'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate) prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator (pro-urokinase) to the active two chain form. Activates coagulation factor VII.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q6L711|HABP2_RAT Hyaluronan-binding protein 2 OS=Rattus norvegicus GN=Habp2 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 6   DHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGI 65
           DH  D S+     L  PG D+C GDSGGPL  + + T  +Y+ G+VS+G  ECG   PG+
Sbjct: 482 DHTIDDSMICAGNLQKPGSDTCQGDSGGPLTCEKDGT--YYVYGIVSWGQ-ECG-KKPGV 537

Query: 66  YTRITAYLPWIIARMAYEV 84
           YT++T +L WI   M  E 
Sbjct: 538 YTQVTKFLNWIKTTMHKEA 556

Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and 'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate) prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator (pro-urokinase) to the active two chain form. Activates coagulation factor VII.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8VCA5|TMPS4_MOUSE Transmembrane protease serine 4 OS=Mus musculus GN=Tmprss4 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 3/54 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           GKD+C GDSGGPL++ ++   K  ++G+VS+G    G  +PG+YT++TAYL WI
Sbjct: 377 GKDTCQGDSGGPLMYHSD---KWQVVGIVSWGHGCGGPSTPGVYTKVTAYLNWI 427

Probable protease. Seems to be capable of activating ENaC.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
225713904	483	Serine protease easter precursor [Lepeop	0.702	0.122	0.508	3e-12
195111956	283	GI22460 [Drosophila mojavensis] gi|19391	0.809	0.240	0.441	7e-12
225709020	485	Serine protease easter precursor [Caligu	0.857	0.148	0.493	2e-11
170055456	367	urokinase-type plasminogen activator [Cu	0.690	0.158	0.5	3e-11
328721534	432	PREDICTED: transmembrane protease serine	0.666	0.129	0.576	3e-11
158300254	324	AGAP012328-PA [Anopheles gambiae str. PE	0.928	0.240	0.439	4e-11
195588110	319	GD13921 [Drosophila simulans] gi|1941958	0.654	0.172	0.548	4e-11
239792265	128	ACYPI007244 [Acyrthosiphon pisum]	0.666	0.437	0.576	5e-11
24658948	319	CG6462 [Drosophila melanogaster] gi|7295	0.654	0.172	0.548	5e-11
73913562	455	hemolymph proteinase 12 [Manduca sexta]	0.666	0.123	0.610	6e-11

>gi|225713904|gb|ACO12798.1| Serine protease easter precursor [Lepeophtheirus salmonis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 46/61 (75%), Gaps = 2/61 (3%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRK--HYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           P KDSCN DSGGPL++K N+  +   + +G+VS+GT  CG+G PGIYTR++++L WI  +
Sbjct: 421 PQKDSCNADSGGPLIYKANEFSETPMFQVGIVSFGTRTCGVGKPGIYTRVSSFLDWIDQK 480

Query: 80  M 80
           +
Sbjct: 481 L 481

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195111956|ref|XP_002000542.1| GI22460 [Drosophila mojavensis] gi|193917136|gb|EDW16003.1| GI22460 [Drosophila mojavensis]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 47/68 (69%)

Query: 11  ISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRIT 70
           ++  E   L  PG+ +C GDSGGPL+  ++ +R+  L+G+VSYG+  C  G P +YTR++
Sbjct: 207 VTPNEICALSAPGRGACMGDSGGPLILASDGSRQQQLVGIVSYGSSTCAQGKPDVYTRVS 266

Query: 71  AYLPWIIA 78
           +YLP+I A
Sbjct: 267 SYLPYISA 274

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225709020|gb|ACO10356.1| Serine protease easter precursor [Caligus rogercresseyi]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 5/77 (6%)

Query: 5   NDHKGDISVTETKFLVFPG---KDSCNGDSGGPLVWKNNDTRK--HYLIGLVSYGTPECG 59
           ND    I V  T+ +   G   KDSCN DSGGPL++K ND  +   + +G+VS+GT  CG
Sbjct: 403 NDAYRLIEVNNTQQMCAGGELDKDSCNSDSGGPLIYKANDFSETPMFQVGIVSFGTRPCG 462

Query: 60  IGSPGIYTRITAYLPWI 76
           I  PGIYTRI+++L WI
Sbjct: 463 IRKPGIYTRISSFLEWI 479

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055456|ref|XP_001863590.1| urokinase-type plasminogen activator [Culex quinquefasciatus] gi|167875413|gb|EDS38796.1| urokinase-type plasminogen activator [Culex quinquefasciatus]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G+D+CNGDSGGPL+ +  +  ++Y+ GLVS+G  +CG   PG+YTR+  YL WI+A++
Sbjct: 303 GRDTCNGDSGGPLMKEVAEQGRYYVAGLVSFGPNKCGEQLPGVYTRVEHYLQWIVAKV 360

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721534|ref|XP_001944315.2| PREDICTED: transmembrane protease serine 9-like [Acyrthosiphon pisum]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%), Gaps = 3/59 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 80
           GKDSC GDSGGPL+W   +  + YLIG+VSYG  ECG  G PG+YT++T+Y+ WI+ R+
Sbjct: 374 GKDSCRGDSGGPLMWSKRN--QFYLIGVVSYGFHECGDPGHPGVYTKVTSYMDWILNRI 430

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300254|ref|XP_320219.3| AGAP012328-PA [Anopheles gambiae str. PEST] gi|157013070|gb|EAA00349.3| AGAP012328-PA [Anopheles gambiae str. PEST]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 2   NHPNDHKGDISVTETKFLVF--PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG 59
           N     +  + +TET+F     PGKD+CNGDSGGPL+ K   T  HY++G+VS+G   CG
Sbjct: 241 NETYQRRVKVPLTETQFCAMGTPGKDTCNGDSGGPLM-KTMKTL-HYVVGVVSFGPQRCG 298

Query: 60  IGSPGIYTRITAYLPWIIARMA 81
            G P +YTR+  +  WI+  M 
Sbjct: 299 SGIPAVYTRVDKFYDWIVGHMV 320

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195588110|ref|XP_002083801.1| GD13921 [Drosophila simulans] gi|194195810|gb|EDX09386.1| GD13921 [Drosophila simulans]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 7/62 (11%)

Query: 23  GKDSCNGDSGGPLV--WKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWIIAR 79
           G+ +CNGDSGGP+V  W+N      YLIG+ S+G+ E C +G P +YTRITAYLPWI  +
Sbjct: 259 GRGACNGDSGGPVVYHWRNVS----YLIGVTSFGSAEGCEVGGPTVYTRITAYLPWIRQQ 314

Query: 80  MA 81
            A
Sbjct: 315 TA 316

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239792265|dbj|BAH72494.1| ACYPI007244 [Acyrthosiphon pisum]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%), Gaps = 3/59 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 80
           GKDSC GDSGGPL+W   +  + YLIG+VSYG  ECG  G PG+YT++T+Y+ WI+ R+
Sbjct: 70  GKDSCRGDSGGPLMWSKRN--QFYLIGVVSYGFHECGDPGHPGVYTKVTSYMDWILNRI 126

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24658948|ref|NP_648011.1| CG6462 [Drosophila melanogaster] gi|7295398|gb|AAF50715.1| CG6462 [Drosophila melanogaster]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 7/62 (11%)

Query: 23  GKDSCNGDSGGPLV--WKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWIIAR 79
           G+ +CNGDSGGP+V  W+N      YLIG+ S+G+ E C +G P +YTRITAYLPWI  +
Sbjct: 259 GRGACNGDSGGPVVYHWRNVS----YLIGVTSFGSAEGCEVGGPTVYTRITAYLPWIRQQ 314

Query: 80  MA 81
            A
Sbjct: 315 TA 316

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|73913562|gb|AAZ91694.1| hemolymph proteinase 12 [Manduca sexta]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 3/59 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM 80
           GKDSC GDSGGPL+++N   RK+  +G+VSYG  ECGIG  PG+YT I  YLPWI A +
Sbjct: 397 GKDSCKGDSGGPLMYENE--RKYTAVGMVSYGLGECGIGGYPGVYTNIYPYLPWIKATI 453

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
FB|FBgn0035663	319	CG6462 [Drosophila melanogaste	0.595	0.156	0.578	2.9e-14
ZFIN|ZDB-GENE-090309-3	506	tmprss13a "transmembrane prote	0.702	0.116	0.516	4.6e-12
FB|FBgn0051219	345	CG31219 [Drosophila melanogast	0.678	0.165	0.542	8.8e-12
FB|FBgn0027930	399	MP1 "Melanization Protease 1"	0.642	0.135	0.543	1.3e-11
UNIPROTKB|E9PIJ5	532	TMPRSS13 "Transmembrane protea	0.702	0.110	0.523	1.7e-11
UNIPROTKB|F1S5J5	552	HABP2 "Uncharacterized protein	0.880	0.134	0.461	1.9e-11
UNIPROTKB|E9PRA0	567	TMPRSS13 "Transmembrane protea	0.702	0.104	0.523	1.9e-11
RGD|1310872	525	Tmprss13 "transmembrane protea	0.702	0.112	0.523	2.8e-11
FB|FBgn0036738	270	CG7542 [Drosophila melanogaste	0.630	0.196	0.517	2.9e-11
MGI|MGI:2682935	543	Tmprss13 "transmembrane protea	0.702	0.108	0.523	3e-11

FB|FBgn0035663 CG6462 [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query:    23 GKDSCNGDSGGPLV--WKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWI 76
             G+ +CNGDSGGP+V  W+N      YLIG+ S+G+ E C +G P +YTRITAYLPWI
Sbjct:   259 GRGACNGDSGGPVVYHWRNVS----YLIGVTSFGSAEGCEVGGPTVYTRITAYLPWI 311

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

ZFIN|ZDB-GENE-090309-3 tmprss13a "transmembrane protease, serine 13a" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query:    23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA 81
             G+DSC GDSGGPLV K+ D  + YL+G+ S+G   CG    PG+Y+R+T++LPWI  +M 
Sbjct:   445 GRDSCQGDSGGPLVCKD-DNNRWYLVGITSWGAG-CGQKQKPGVYSRVTSFLPWIYTKMQ 502

Query:    82 YE 83
              E
Sbjct:   503 QE 504

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

FB|FBgn0051219 CG31219 [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 8.8e-12, P = 8.8e-12
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query:    21 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIA 78
             + G D+C GDSGGPL+    D    YL G+ +YG+  CG IG PGIYTR +A+LPWI A
Sbjct:   284 YDGVDTCQGDSGGPLM-VTMDNSSVYLAGITTYGSKNCGQIGIPGIYTRTSAFLPWIKA 341

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0027930 MP1 "Melanization Protease 1" [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query:    23 GKDSCNGDSGGPLVWKN--NDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
             G DSC GDSGGPL+ ++  N    +Y+ G+VSYG   CG+ G PG+YTR+ AYL WI
Sbjct:   337 GVDSCRGDSGGPLLLEDYSNGNSNYYIAGVVSYGPTPCGLKGWPGVYTRVEAYLNWI 393

GO:0006952 "defense response" evidence=NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0035006 "melanization defense response" evidence=IMP;NAS

UNIPROTKB|E9PIJ5 TMPRSS13 "Transmembrane protease serine 13" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query:    23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             G+DSC GDSGGPLV + N+  + YL G+ S+GT  CG    PG+YT++T  LPWI ++M 
Sbjct:   468 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTG-CGQRNKPGVYTKVTEVLPWIYSKME 524

Query:    82 YEV 84
              EV
Sbjct:   525 SEV 527

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1S5J5 HABP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 166 (63.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 36/78 (46%), Positives = 49/78 (62%)

Query:     6 DHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGI 65
             DH  D ++     L  PG+DSC GDSGGPL  + +D   +Y+ G+VS+G  ECG   PG+
Sbjct:   476 DHMLDDNMICAGNLQKPGQDSCQGDSGGPLTCEKDDA--YYVYGIVSWGL-ECG-KKPGV 531

Query:    66 YTRITAYLPWIIARMAYE 83
             YT++T +L WI A M  E
Sbjct:   532 YTQVTTFLNWIRATMERE 549

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|E9PRA0 TMPRSS13 "Transmembrane protease serine 13" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query:    23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             G+DSC GDSGGPLV + N+  + YL G+ S+GT  CG    PG+YT++T  LPWI ++M 
Sbjct:   503 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTG-CGQRNKPGVYTKVTEVLPWIYSKME 559

Query:    82 YEV 84
              EV
Sbjct:   560 SEV 562

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1310872 Tmprss13 "transmembrane protease, serine 13" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query:    23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             G+DSC GDSGGPLV + N+  + YL G+ S+GT  CG    PG+YT++T  LPWI  +M 
Sbjct:   461 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTG-CGQKNKPGVYTKVTEVLPWIYRKME 517

Query:    82 YEV 84
              EV
Sbjct:   518 SEV 520

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0036738 CG7542 [Drosophila melanogaster (taxid:7227)]

 Score = 157 (60.3 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query:    23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWII 77
             GK +C+GDSGGPLV+K  ++   YLIG  S+GT   C +G P ++TRI++YL WI+
Sbjct:   208 GKSTCHGDSGGPLVYKQGNSS--YLIGSTSFGTSMGCQVGFPAVFTRISSYLDWIL 261

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

MGI|MGI:2682935 Tmprss13 "transmembrane protease, serine 13" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query:    23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             G+DSC GDSGGPLV + N+  + YL G+ S+GT  CG    PG+YT++T  LPWI  +M 
Sbjct:   479 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTG-CGQKNKPGVYTKVTEVLPWIYRKME 535

Query:    82 YEV 84
              EV
Sbjct:   536 SEV 538

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	84
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	2e-18
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	2e-18
pfam00089	218	pfam00089, Trypsin, Trypsin	3e-15
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	3e-14

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score = 75.4 bits (186), Expect = 2e-18
 Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 5/55 (9%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           GKD+C GDSGGPLV  +    +  L+G+VS+G+  C   G PG+YTR+++YL WI
Sbjct: 179 GKDACQGDSGGPLVCNDG---RWVLVGIVSWGSG-CARPGKPGVYTRVSSYLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score = 75.4 bits (186), Expect = 2e-18
 Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           GKD+C GDSGGPLV  +N      L+G+VS+G+  C     PG+YTR+++YL WI
Sbjct: 178 GKDACQGDSGGPLVCNDNGR--GVLVGIVSWGS-GCARPNYPGVYTRVSSYLDWI 229

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 66.7 bits (163), Expect = 3e-15
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           GKD+C GDSGGPLV  +       LIG+VS+G        PG+YT +++YL WI
Sbjct: 170 GKDACQGDSGGPLVCSDG-----ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 80
           P KD+C GDSGGP+  K  + R     G+VS+G   CG    PG+YT ++ Y  WI A  
Sbjct: 221 PPKDACQGDSGGPIFHKGEEGRVQ--RGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMT 278

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
KOG3627|consensus	256		99.8
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	99.67
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.65
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	99.51
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.47
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	97.57
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	96.65
PF00947	127	Pico_P2A: Picornavirus core protein 2A; InterPro:	94.65
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	92.17
PF05580	218	Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR	86.46
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	85.99
PRK10898	353	serine endoprotease; Provisional	85.79
PF02907	148	Peptidase_S29: Hepatitis C virus NS3 protease; Int	82.85
PF05579	297	Peptidase_S32: Equine arteritis virus serine endop	82.67
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	80.53
PRK10139	455	serine endoprotease; Provisional	80.2

>KOG3627|consensus

Probab=99.80  E-value=1.8e-19  Score=116.11  Aligned_cols=75  Identities=41%  Similarity=0.821  Sum_probs=63.0

Q ss_pred             CCCCCCC--CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHH
Q psy17087          5 NDHKGDI--SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   78 (84)
Q Consensus         5 ~~~~~~~--~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~   78 (84)
                      |...+..  .+++.||| +  ....++|+|||||||++....  +++++||+|||...|.... |++||+|+.|.+||++
T Consensus       175 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~--~~~~~GivS~G~~~C~~~~~P~vyt~V~~y~~WI~~  252 (256)
T KOG3627|consen  175 CRRAYGGLGTITDTMLCAGGPEGGKDACQGDSGGPLVCEDNG--RWVLVGIVSWGSGGCGQPNYPGVYTRVSSYLDWIKE  252 (256)
T ss_pred             hcccccCccccCCCEEeeCccCCCCccccCCCCCeEEEeeCC--cEEEEEEEEecCCCCCCCCCCeEEeEhHHhHHHHHH
Confidence            4444444  57778999 6  567788999999999998763  5999999999986699876 9999999999999999


Q ss_pred             Hhh
Q psy17087         79 RMA   81 (84)
Q Consensus        79 ~~~   81 (84)
                      .+.
T Consensus       253 ~~~  255 (256)
T KOG3627|consen  253 NIG  255 (256)
T ss_pred             Hhc
Confidence            875

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=99.67  E-value=1.2e-16  Score=100.28  Aligned_cols=66  Identities=44%  Similarity=0.928  Sum_probs=57.0

Q ss_pred             CCCCCCeec-C-CC-CCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHH
Q psy17087         11 ISVTETKFL-V-FP-GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   79 (84)
Q Consensus        11 ~~i~~~~~C-~-~~-~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~   79 (84)
                      ..+.+.+|| . .. ..+.|.||||+||++... + +++|+||+|++.. |.... |.+||+|+.|++||+++
T Consensus       163 ~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~-~-~~~lvGI~s~g~~-c~~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         163 GTITDNMLCAGGLEGGKDACQGDSGGPLVCNDN-G-RGVLVGIVSWGSG-CARPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             ccCCCceEeeCCCCCCCccccCCCCCcEEEEeC-C-EEEEEEEEehhhc-cCCCCCCCEEEEcHHhhHHhhcC
Confidence            467899999 6 33 788999999999999875 4 4999999999998 98745 99999999999999863

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=6.3e-16  Score=103.99  Aligned_cols=63  Identities=41%  Similarity=0.797  Sum_probs=55.9

Q ss_pred             eec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         17 KFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        17 ~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      -+| +....++|+||||||++....++  +.++||+|||.+.|+.+. |+|||+|+.|.+||...+.
T Consensus       215 ~~cag~~~~daCqGDSGGPi~~~g~~G--~vQ~GVvSwG~~~Cg~t~~~gVyT~vsny~~WI~a~~~  279 (413)
T COG5640         215 GFCAGRPPKDACQGDSGGPIFHKGEEG--RVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMTN  279 (413)
T ss_pred             ceecCCCCcccccCCCCCceEEeCCCc--cEEEeEEEecCCCCCCCCcceeEEehhHHHHHHHHHhc
Confidence            399 86669999999999999986533  579999999998899988 9999999999999999765

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=99.51  E-value=3.6e-14  Score=89.32  Aligned_cols=61  Identities=46%  Similarity=1.028  Sum_probs=53.1

Q ss_pred             CCCCCeec-C-CC-CCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHH
Q psy17087         12 SVTETKFL-V-FP-GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI   76 (84)
Q Consensus        12 ~i~~~~~C-~-~~-~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI   76 (84)
                      .+.+.++| + .. ....|.||||+||++...   +|+|+||+|++.. |.... |.+|++|..|.+||
T Consensus       165 ~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~---~~~l~Gi~s~g~~-C~~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      165 AITDNMLCAGGLEGGKDACQGDSGGPLVCNDG---RWVLVGIVSWGSG-CARPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             ccCCCcEeecCCCCCCcccCCCCCCeeEEECC---CEEEEEEEEECCC-CCCCCCCCEEEEeccccccC
Confidence            57889999 6 33 678999999999999853   5999999999996 98555 99999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.47  E-value=1.3e-13  Score=85.91  Aligned_cols=60  Identities=47%  Similarity=0.987  Sum_probs=52.0

Q ss_pred             CCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHH
Q psy17087         11 ISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI   76 (84)
Q Consensus        11 ~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI   76 (84)
                      ..+.+.++| . ....+.|.||||+||++..   .  +|+||++++.. |.... |.+|++|+.|++||
T Consensus       158 ~~~~~~~~c~~~~~~~~~~~g~sG~pl~~~~---~--~lvGI~s~~~~-c~~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  158 DNLTPNMICAGSSGSGDACQGDSGGPLICNN---N--YLVGIVSFGEN-CGSPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             TTSTTTEEEEETTSSSBGGTTTTTSEEEETT---E--EEEEEEEEESS-SSBTTSEEEEEEGGGGHHHH
T ss_pred             cccccccccccccccccccccccccccccce---e--eecceeeecCC-CCCCCcCEEEEEHHHhhccC
Confidence            347889999 6 4567899999999999873   2  69999999976 99887 99999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=97.57  E-value=0.0002  Score=47.11  Aligned_cols=53  Identities=36%  Similarity=0.555  Sum_probs=40.0

Q ss_pred             CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHH
Q psy17087         21 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI   76 (84)
Q Consensus        21 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI   76 (84)
                      ......|.+|+||||+...+ ++ |+|+||.+.+...|... ...|.+|..|.+=|
T Consensus       223 ~~~~~~~~~d~Gg~lv~~~~-gr-~tlIGv~~~~~~~~~~~-~~~f~~v~~~~~~I  275 (282)
T PF03761_consen  223 CTKQYSCKGDRGGPLVKNIN-GR-WTLIGVGASGNYECNKN-NSYFFNVSWYQDEI  275 (282)
T ss_pred             ecccccCCCCccCeEEEEEC-CC-EEEEEEEccCCCccccc-ccEEEEHHHhhhhh
Confidence            44567899999999998875 55 99999999776434432 67888888766533

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.65  E-value=0.0018  Score=48.44  Aligned_cols=30  Identities=37%  Similarity=0.628  Sum_probs=23.8

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      =.||||+||+..+....+|.|+|+.+.+..
T Consensus       214 ~~GDSGSPlF~YD~~~kKWvl~Gv~~~~~~  243 (769)
T PF02395_consen  214 SPGDSGSPLFAYDKEKKKWVLVGVLSGGNG  243 (769)
T ss_dssp             -TT-TT-EEEEEETTTTEEEEEEEEEEECC
T ss_pred             ccCcCCCceEEEEccCCeEEEEEEEccccc
Confidence            469999999998877778999999998765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.65  E-value=0.051  Score=32.34  Aligned_cols=34  Identities=32%  Similarity=0.515  Sum_probs=26.4

Q ss_pred             cCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEecccc
Q psy17087         28 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAY   72 (84)
Q Consensus        28 ~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~   72 (84)
                      .||-||+|.|+.   .   ++||++.|..     +-..|++|..+
T Consensus        89 PGdCGg~L~C~H---G---ViGi~Tagg~-----g~VaF~dir~~  122 (127)
T PF00947_consen   89 PGDCGGILRCKH---G---VIGIVTAGGE-----GHVAFADIRDL  122 (127)
T ss_dssp             TT-TCSEEEETT---C---EEEEEEEEET-----TEEEEEECCCG
T ss_pred             CCCCCceeEeCC---C---eEEEEEeCCC-----ceEEEEechhh
Confidence            378999999994   4   9999998765     35679998775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=92.17  E-value=0.4  Score=31.77  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=35.8

Q ss_pred             CCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEec-cccHHHHHHHhh
Q psy17087         23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRI-TAYLPWIIARMA   81 (84)
Q Consensus        23 ~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v-~~~~~WI~~~~~   81 (84)
                      ..+++.|+||+|++....     +++||..-+...-+...-.-.+++ ..+.+||++.++
T Consensus       197 ~~dT~pG~SGSpv~~~~~-----~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~~  251 (251)
T COG3591         197 DADTLPGSSGSPVLISKD-----EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNIK  251 (251)
T ss_pred             EecccCCCCCCceEecCc-----eEEEEEecCCCcccccccCcceEecHHHHHHHHHhhC
Confidence            357789999999997632     599999887752222223334444 446789888653

>PF05580 Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR008763 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.46  E-value=0.83  Score=29.67  Aligned_cols=28  Identities=29%  Similarity=0.374  Sum_probs=22.9

Q ss_pred             CCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        23 ~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      ....-||.||+|++..   ++   |+|-+++..-
T Consensus       174 TGGIvqGMSGSPI~qd---GK---LiGAVthvf~  201 (218)
T PF05580_consen  174 TGGIVQGMSGSPIIQD---GK---LIGAVTHVFV  201 (218)
T ss_pred             hCCEEecccCCCEEEC---CE---EEEEEEEEEe
Confidence            3467899999999876   78   9999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S55 (SpoIVB peptidase family, clan PA(S)). The protein SpoIVB plays a key role in signalling in the final sigma-K checkpoint of Bacillus subtilis [, ].

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=85.99  E-value=0.49  Score=26.40  Aligned_cols=19  Identities=42%  Similarity=0.828  Sum_probs=14.1

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEE
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGL   50 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi   50 (84)
                      =.|.|||||+-  .++.   ++||
T Consensus       102 ~~G~SGgpv~~--~~G~---vvGi  120 (120)
T PF13365_consen  102 RPGSSGGPVFD--SDGR---VVGI  120 (120)
T ss_dssp             STTTTTSEEEE--TTSE---EEEE
T ss_pred             CCCcEeHhEEC--CCCE---EEeC
Confidence            35899999975  2266   8886

...

>PRK10898 serine endoprotease; Provisional

Probab=85.79  E-value=1.4  Score=30.27  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=18.5

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecC
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGT   55 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~   55 (84)
                      -.|.|||||+-..  |+   ++||.+...
T Consensus       196 ~~GnSGGPl~n~~--G~---vvGI~~~~~  219 (353)
T PRK10898        196 NHGNSGGALVNSL--GE---LMGINTLSF  219 (353)
T ss_pred             CCCCCcceEECCC--Ce---EEEEEEEEe
Confidence            4588999998542  77   999988654

>PF02907 Peptidase_S29: Hepatitis C virus NS3 protease; InterPro: IPR004109 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.85  E-value=0.82  Score=27.74  Aligned_cols=21  Identities=29%  Similarity=0.687  Sum_probs=14.7

Q ss_pred             cCCCCcccEEEeCCCCeEEEEEEEee
Q psy17087         28 NGDSGGPLVWKNNDTRKHYLIGLVSY   53 (84)
Q Consensus        28 ~gdsGgPl~~~~~~~~~~~l~Gi~s~   53 (84)
                      .|.||+|++|..  |.   ++||.--
T Consensus       107 kGSSGgPiLC~~--GH---~vG~f~a  127 (148)
T PF02907_consen  107 KGSSGGPILCPS--GH---AVGMFRA  127 (148)
T ss_dssp             TT-TT-EEEETT--SE---EEEEEEE
T ss_pred             ecCCCCcccCCC--CC---EEEEEEE
Confidence            689999999985  55   8887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies the Hepatitis C virus NS3 protein as a serine protease which belongs to MEROPS peptidase family S29 (hepacivirin family, clan PA(S)), which has a trypsin-like fold. The non-structural (NS) protein NS3 is one of the NS proteins involved in replication of the HCV genome. The NS2 proteinase (IPR002518 from INTERPRO), a zinc-dependent enzyme, performs a single proteolytic cut to release the N terminus of NS3. The action of NS3 proteinase (NS3P), which resides in the N-terminal one-third of the NS3 protein, then yields all remaining non-structural proteins. The C-terminal two-thirds of the NS3 protein contain a helicase. The functional relationship between the proteinase and helicase domains is unknown. NS3 has a structural zinc-binding site and requires cofactor NS4. It has been suggested that the NS3 serine protease of hepatitus C is involved in cell transformation and that the ability to transform requires an active enzyme [].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0019087 transformation of host cell by virus; PDB: 2QV1_B 3LOX_C 2OBQ_C 2OC1_C 2OC0_A 3LON_A 3KNX_A 2O8M_A 2OBO_A 2OC8_A ....

>PF05579 Peptidase_S32: Equine arteritis virus serine endopeptidase S32; InterPro: IPR008760 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.67  E-value=1.3  Score=29.86  Aligned_cols=23  Identities=39%  Similarity=0.634  Sum_probs=16.6

Q ss_pred             cCCCCcccEEEeCCCCeEEEEEEEeecC
Q psy17087         28 NGDSGGPLVWKNNDTRKHYLIGLVSYGT   55 (84)
Q Consensus        28 ~gdsGgPl~~~~~~~~~~~l~Gi~s~~~   55 (84)
                      -||||+|++.++  +.   |+||-+-.+
T Consensus       207 ~GDSGSPVVt~d--g~---liGVHTGSn  229 (297)
T PF05579_consen  207 PGDSGSPVVTED--GD---LIGVHTGSN  229 (297)
T ss_dssp             GGCTT-EEEETT--C----EEEEEEEEE
T ss_pred             CCCCCCccCcCC--CC---EEEEEecCC
Confidence            489999999764  66   999988654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S32 (clan PA(S)). The type example is equine arteritis virus serine endopeptidase (equine arteritis virus), which is involved in processing of nidovirus polyproteins [].; GO: 0004252 serine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 3FAN_A 3FAO_A 1MBM_A.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=80.53  E-value=3.5  Score=28.97  Aligned_cols=24  Identities=38%  Similarity=0.505  Sum_probs=18.1

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecC
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGT   55 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~   55 (84)
                      -.|.|||||+-..  |.   ++||.+...
T Consensus       177 ~~GnSGGpl~n~~--G~---viGI~~~~~  200 (428)
T TIGR02037       177 NPGNSGGPLVNLR--GE---VIGINTAIY  200 (428)
T ss_pred             CCCCCCCceECCC--Ce---EEEEEeEEE
Confidence            4588999998442  77   999987643

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=80.20  E-value=3.9  Score=29.21  Aligned_cols=25  Identities=36%  Similarity=0.442  Sum_probs=19.2

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEeecC
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGT   55 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~   55 (84)
                      .-.|.|||||+-..  |+   ++||.+...
T Consensus       209 in~GnSGGpl~n~~--G~---vIGi~~~~~  233 (455)
T PRK10139        209 INRGNSGGALLNLN--GE---LIGINTAIL  233 (455)
T ss_pred             cCCCCCcceEECCC--Ce---EEEEEEEEE
Confidence            34689999999543  77   999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		2e-10
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		3e-10
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		3e-10
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		4e-10
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		1e-09
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		1e-09
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		2e-09
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		2e-09
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		2e-09
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		5e-09
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		1e-08
2any_A	241	Expression, Crystallization And The Three-Dimension		2e-08
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		2e-08
2anw_A	241	Expression, Crystallization And Three-Dimensional S		2e-08
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		2e-08
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		3e-08
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		3e-08
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		3e-08
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		5e-08
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		5e-08
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		5e-08
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		6e-08
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		6e-08
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		6e-08
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		6e-08
2bok_A	241	Factor Xa- Cation Length = 241		6e-08
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		6e-08
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		6e-08
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		7e-08
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		1e-07
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-07
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		1e-07
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		1e-07
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		1e-07
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		1e-07
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		1e-07
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		1e-07
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-07
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		1e-07
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		1e-07
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		1e-07
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		1e-07
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		1e-07
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		1e-07
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		1e-07
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		1e-07
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		1e-07
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		2e-07
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		3e-07
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		3e-07
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		3e-07
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		3e-07
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		3e-07
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		3e-07
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		4e-07
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		5e-07
1pfx_C	235	Porcine Factor Ixa Length = 235		5e-07
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		5e-07
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		5e-07
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		6e-07
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		6e-07
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		6e-07
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		6e-07
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		6e-07
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		6e-07
4gso_A	232	Structure Of Jararacussin-I Length = 232		6e-07
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		6e-07
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		7e-07
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		7e-07
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		7e-07
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		7e-07
1lto_A	245	Human Alpha1-Tryptase Length = 245		7e-07
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		7e-07
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		7e-07
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		7e-07
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		7e-07
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		7e-07
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		8e-07
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		8e-07
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		9e-07
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		9e-07
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		9e-07
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		9e-07
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		9e-07
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		1e-06
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		1e-06
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		1e-06
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		1e-06
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		1e-06
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		1e-06
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		1e-06
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		1e-06
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		1e-06
1kig_H	241	Bovine Factor Xa Length = 241		1e-06
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		1e-06
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		1e-06
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		1e-06
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		1e-06
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		1e-06
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		1e-06
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		1e-06
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		1e-06
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		1e-06
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		1e-06
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		1e-06
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		1e-06
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		2e-06
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		2e-06
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		2e-06
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		2e-06
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		2e-06
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		2e-06
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-06
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		2e-06
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-06
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		2e-06
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		2e-06
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		2e-06
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		2e-06
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		2e-06
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		2e-06
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		2e-06
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		2e-06
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		2e-06
2xrc_A	565	Human Complement Factor I Length = 565		3e-06
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		3e-06
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		3e-06
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		3e-06
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		3e-06
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		3e-06
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		3e-06
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		3e-06
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-06
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		3e-06
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		3e-06
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		3e-06
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		3e-06
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		4e-06
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		4e-06
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		4e-06
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		4e-06
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		4e-06
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		5e-06
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		5e-06
2a31_A	223	Trypsin In Complex With Borate Length = 223		5e-06
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		5e-06
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		5e-06
1aut_C	250	Human Activated Protein C Length = 250		5e-06
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		5e-06
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		5e-06
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		5e-06
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		5e-06
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		6e-06
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		6e-06
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		6e-06
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		6e-06
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		7e-06
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		7e-06
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		7e-06
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		7e-06
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		8e-06
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		8e-06
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		8e-06
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		8e-06
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		8e-06
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		8e-06
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		8e-06
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		9e-06
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		9e-06
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		1e-05
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		1e-05
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-05
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		1e-05
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		1e-05
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		1e-05
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-05
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		1e-05
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		1e-05
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		1e-05
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		1e-05
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		2e-05
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		2e-05
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		2e-05
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		2e-05
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		2e-05
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		2e-05
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		2e-05
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		2e-05
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		2e-05
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-05
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		2e-05
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		2e-05
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		2e-05
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		2e-05
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		2e-05
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		3e-05
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		3e-05
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		3e-05
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		3e-05
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		3e-05
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		4e-05
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		4e-05
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		5e-05
1dpo_A	223	Structure Of Rat Trypsin Length = 223		5e-05
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		6e-05
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		7e-05
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		7e-05
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		8e-05
2kai_B	152	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		8e-05
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		8e-05
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		9e-05
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		1e-04
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		1e-04
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		1e-04
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		1e-04
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		1e-04
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		1e-04
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		2e-04
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		2e-04
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		2e-04
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		2e-04
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		2e-04
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		2e-04
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		2e-04
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		2e-04
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		2e-04
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		2e-04
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		2e-04
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		2e-04
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		2e-04
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		2e-04
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		2e-04
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		2e-04
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		2e-04
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		2e-04
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		2e-04
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		2e-04
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		2e-04
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		2e-04
2hnt_F	105	Crystallographic Structure Of Human Gamma-Thrombin		2e-04
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		2e-04
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		2e-04
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		2e-04
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		2e-04
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		2e-04
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		2e-04
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		2e-04
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		2e-04
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		2e-04
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		2e-04
2pks_C	102	Thrombin In Complex With Inhibitor Length = 102		2e-04
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		2e-04
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		3e-04
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		3e-04
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		3e-04
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		3e-04
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-04
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		3e-04
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		3e-04
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		3e-04
1bbr_E	109	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-04
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		3e-04
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		3e-04
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		4e-04
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		4e-04
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		4e-04
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		4e-04
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		4e-04
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		5e-04
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		5e-04
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		5e-04
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		5e-04
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		5e-04
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		5e-04
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		6e-04
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		6e-04
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		6e-04
1oss_A	223	T190p Streptomyces Griseus Trypsin In Complex With		7e-04
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		7e-04
1kyn_B	235	Cathepsin-G Length = 235		7e-04
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		7e-04
1au8_A	224	Human Cathepsin G Length = 224		8e-04
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		9e-04
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		9e-04

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 181 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 267 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 321

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 342 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 396

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           GKDSC GD+GG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 181 GKDSCRGDAGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 172 GVSSCMGDSGGPLVCKKNG--AWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 228

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 187 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 243

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
          G DSC GDSGGPLV + +      L G+VS+G+  C   +PG+Y+R+TA +PW+
Sbjct: 41 GVDSCMGDSGGPLVCQKDGV--WTLAGIVSWGSGVCSTSTPGVYSRVTALMPWV 92

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
          G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 39 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
          G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 38 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 94

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
          G DSC GDSGGPLV + +      L G+VS+G+  C   +P +Y+R+TA +PW+
Sbjct: 41 GVDSCMGDSGGPLVCQKDGV--WTLAGIVSWGSGVCSTSTPAVYSRVTALMPWV 92

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           KDSCNGDSGGPL+         YL GLVS+G   CG +G PG+YT +  +  WI
Sbjct: 170 KDSCNGDSGGPLICNG------YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWI 217

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPLV K+N   +  L+G+ S+G        PG+YT++  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLVCKHNGMWR--LVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 567 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 621

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPLV K+N   +  L+G+ S+G        PG+YT++  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLVCKHNGMWR--LVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 19  LVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIA 78
           L   G+ +C+GDSGGPLV           IG+VS+G+P C +G P +YTR+++++ WI A
Sbjct: 166 LTKRGEGACHGDSGGPLVANGAQ------IGIVSFGSP-CALGEPDVYTRVSSFVSWINA 218
Query: 79  RM 80
            +
Sbjct: 219 NL 220

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKDSC GDSGGPL    +DT   YL G+VS+G      G PG+YT ++ ++ WI A 
Sbjct: 181 GKDSCQGDSGGPLA--ASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 193 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 247

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 23  GKDSCNGDSGGPLVWKN-NDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G DSC GDSGG    ++ ND  K Y  GLVS+G P+C  G+ G+YTR+  Y+ WI+  M
Sbjct: 269 GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWG-PQC--GTYGLYTRVKNYVDWIMKTM 324

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
            KDSC GDSGGPL+ +  + ++ +L GLVS+G   CG  G PGIYT++  Y  WI
Sbjct: 220 AKDSCGGDSGGPLLAERAN-QQFFLEGLVSFGA-TCGTEGWPGIYTKVGKYRDWI 272

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GD+GGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDAGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM 80
           D+C GDSGGPLV  N+   +  L+G++S+G   CG    PG+YT++T YL WI   M
Sbjct: 210 DACQGDSGGPLVCLNDG--RMTLVGIISWGL-GCGQKDVPGVYTKVTNYLDWIRDNM 263

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 25  DSCNGDSGGPLVWKNNDTRK-HYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 79
           D+C GDSGGPLV  ++D R   YL G+VS+G        PG+YTR+TA   WI ++
Sbjct: 176 DACQGDSGGPLV--SSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSK 229

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCKGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 20  VFPG-KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWII 77
           ++P   D+C GDSGGPLV  N++     L+G++S+G   CG    PG+YT++T YL WI 
Sbjct: 204 IYPNVHDACQGDSGGPLVCMNDNHMT--LLGIISWGV-GCGEKDVPGVYTKVTNYLGWIR 260
Query: 78  ARM 80
             M
Sbjct: 261 DNM 263

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 19  LVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWII 77
           +V  GKD+C GDSGGPL+            G+VSYG   CG G  PGIYT +  Y  WI 
Sbjct: 168 IVQGGKDTCGGDSGGPLICNGQ------FQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQ 221
Query: 78  ARMA 81
             +A
Sbjct: 222 RNIA 225

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 19  LVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWII 77
           +V  GKD+C GDSGGPL+            G+VSYG   CG G  PGIYT +  Y  WI 
Sbjct: 168 IVQGGKDTCGGDSGGPLICNGQ------FQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQ 221
Query: 78  ARMA 81
             +A
Sbjct: 222 RNIA 225

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           D+C GDSGGPL+ K++    + ++G+ S+G        PG+YT   +YL WI +++ 
Sbjct: 193 DTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKIG 249

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           KDSC GDSGGP       T   YL G+VS+G     +G  G+YTR++ Y+ W+   M  E
Sbjct: 185 KDSCKGDSGGPHATHYRGT--WYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSE 242

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           KDSC GDSGGP       T   YL G+VS+G     +G  G+YTR++ Y+ W+   M  E
Sbjct: 185 KDSCKGDSGGPHATHYRGT--WYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSE 242

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           D+C GDSGGPL  + N     YL G++S+G     +  PG+YTR+  Y+ WI  R+
Sbjct: 220 DACQGDSGGPLACEKNGVA--YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 273

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 76
           GKDSC GDSGGPLV  +      +L GLVS+G   CG    PG+YT +  Y  WI
Sbjct: 168 GKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           +DSC GDSGGPLV          L G+VS+G+  CG    PGIYTR+ +Y  WI + +A
Sbjct: 176 RDSCKGDSGGPLVCGG------VLEGVVSWGSRVCGNRKKPGIYTRVASYAAWIDSVLA 228

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           GKDSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GKDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAVKGKYGIYTKVSRYVNWI 228

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 215 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 271

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 76
           GKDSC GDSGGPLV  +      +L GLVS+G   CG    PG+YT +  Y  WI
Sbjct: 169 GKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 217

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 76
           GKDSC GDSGGPLV  +      +L GLVS+G   CG    PG+YT +  Y  WI
Sbjct: 168 GKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+            G+VSYG   CG G  PGIYT +  Y  WI   +A
Sbjct: 170 GKDTCVGDSGGPLICNGQ------FQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIA 223

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 207 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 256

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           K++CNGDSGGPLV +        L GLVS+GT  CG    PG+YT++  +  WI
Sbjct: 169 KNACNGDSGGPLVCRGT------LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWI 216

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           +DSC GDSGGPLV K N T      G+VS+         PGIYTR+T YL WI
Sbjct: 187 RDSCKGDSGGPLVCKVNGTWLQ--AGVVSWDEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           K++CNGDSGGPLV +        L GLVS+GT  CG    PG+YT++  +  WI
Sbjct: 169 KNACNGDSGGPLVCRGT------LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWI 216

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           D+C GDSGGPLV  N+   +  L+G++S+G        PG+YT++T YL WI   M
Sbjct: 197 DACQGDSGGPLVCLNDG--RMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 250

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G D+C GDSGGP V +++ +R  +  L G+VS+GT       PG+YT+++ +  WI
Sbjct: 300 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 355

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G+DSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G D+C GDSGGP V +++ +R  +  L G+VS+GT       PG+YT+++ +  WI
Sbjct: 300 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 355

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G+DSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G+DSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G+DSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G DSC GDSGGPL+ + N+  + +L G+ S+G  EC +   PG+Y R++ +  WI
Sbjct: 179 GIDSCQGDSGGPLMCQENN--RWFLAGVTSFGY-ECALPNRPGVYARVSRFTEWI 230

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
            D+C GDSGGPL  + N     YL G++S+G     +  PG+YTR+  Y+ WI  R+
Sbjct: 184 SDACQGDSGGPLACEKNGVA--YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 238

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
            D+C GDSGGPL  + N     YL G++S+G     +  PG+YTR+  Y+ WI  R+
Sbjct: 184 SDACQGDSGGPLACEKNGVA--YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 238

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           DSC GD+GGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDAGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           D+C GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DACQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 24  KDSCNGDSGGPL----VWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIA 78
           +DSC GDSGGPL     +      K    G+VS G   CG I  PG+YT +  Y+ WI  
Sbjct: 311 QDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITD 370
Query: 79  RMA 81
            MA
Sbjct: 371 TMA 373

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+            G+VS+G   CG G  PG+YT++  Y  WI + +A
Sbjct: 172 GKDTCGGDSGGPLICNGQ------FQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 174 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 226

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           +DSC GDSGGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + +A
Sbjct: 176 RDSCKGDSGGPLVCGG------VLEGVVTSGSAVCGNRKKPGIYTRVASYAAWIDSVLA 228

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  G+YT+++ +L WI
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKFGVYTKVSNFLKWI 228

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 175 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 227

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 183 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 235

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 189 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 241

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI   M
Sbjct: 192 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI   M
Sbjct: 189 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI   M
Sbjct: 189 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCAGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           +DSC GDSGGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + +A
Sbjct: 176 RDSCKGDSGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA 228

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G+DSC GD+GGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDAGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           +DSC GDSGGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + +A
Sbjct: 176 RDSCKGDSGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA 228

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI
Sbjct: 188 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 239

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           +DSC GDSGGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + +A
Sbjct: 183 RDSCKGDSGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA 235

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G D+C GDSGGP V +++ +R  +  L G+VS+GT       PG+YT+++ +  WI
Sbjct: 183 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 238

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI   M
Sbjct: 733 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 788

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G+       PGIYT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIA 221

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G+       PGIYT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIA 221

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 13  VTETKFLV-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITA 71
           +T   F     G DSC GDSGGP+V          L G+VS+G+  C    PG+YT++  
Sbjct: 156 ITSNMFCAGLEGGDSCQGDSGGPVVCSGK------LQGIVSWGS-GCAKNKPGVYTKVCN 208
Query: 72  YLPWIIARMA 81
           Y+ WI   +A
Sbjct: 209 YVSWIKQTIA 218

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Query: 25  DSCNGDSGGPLVW--KNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 76
           D+C GDSGGPLV    NN T   Y+ G+VS+G   CG    PG+YT++  Y  WI
Sbjct: 501 DACKGDSGGPLVCMDANNVT---YVWGVVSWGE-NCGKPEFPGVYTKVANYFDWI 551

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GD+GGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 189 GKDSCQGDAGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 241

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G DSC GD+GGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI   M
Sbjct: 192 GTDSCQGDAGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G DSC GD+GGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI   M
Sbjct: 189 GTDSCQGDAGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 14/64 (21%)
Query: 23  GKDSCNGDSGGPL------VWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           GKD+C GDSGGPL      +W        YL G+VS+G        PG+YT  ++Y  WI
Sbjct: 186 GKDACQGDSGGPLSCPVEGLW--------YLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Query: 77  IARM 80
            +++
Sbjct: 238 QSKV 241

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 14/64 (21%)
Query: 23  GKDSCNGDSGGPL------VWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           GKD+C GDSGGPL      +W        YL G+VS+G        PG+YT  ++Y  WI
Sbjct: 186 GKDACQGDSGGPLSCPVEGLW--------YLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Query: 77  IARM 80
            +++
Sbjct: 238 QSKV 241

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+       PG YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G DSC GD+GGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI   M
Sbjct: 190 GTDSCQGDAGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 245

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G DSC GD+GGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI   M
Sbjct: 191 GTDSCQGDAGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 246

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y  WI + M+
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTMS 221

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           +DSC GD+GGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + +A
Sbjct: 176 RDSCKGDAGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA 228

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 14/64 (21%)
Query: 23  GKDSCNGDSGGPL------VWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           GKD+C GDSGGPL      +W        YL G+VS+G        PG+YT  ++Y  WI
Sbjct: 186 GKDACQGDSGGPLSCPVEGLW--------YLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Query: 77  IARM 80
            +++
Sbjct: 238 QSKV 241

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 80
           G D+C GDSGGPLV          L G+ S+G+  CG    PG+YT+I  Y  WI   M
Sbjct: 172 GADTCQGDSGGPLVCDG------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G        PGIYT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGIYTKVCNYVSWIKQTIA 221

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 177 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 229

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GD GGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDXGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           +D+C GDSGGP+V   + T   +L+GLVS+G   CG + + G+YT+++ YL WI
Sbjct: 184 QDACEGDSGGPMVASFHGT--WFLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWI 234

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 173 GKDSCQGDSGGPVVCNGQ------LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           +D+C GDSGGP+V   + T   +L+GLVS+G   CG + + G+YT+++ YL WI
Sbjct: 184 QDACEGDSGGPMVASFHGT--WFLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWI 234

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFSDWLTSTMA 220

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           G+D+C+ DSGGPL+            G+VS+G   CG  G PG+YT++  YL WI + +A
Sbjct: 172 GRDTCHFDSGGPLICNG------IFQGIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSIIA 225

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G+       PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GD+GGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDAGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 221

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           D+C GDSGGPL+ ++       ++G+ S+G        PG+YT    YL WI +++
Sbjct: 193 DTCQGDSGGPLMCRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIASKI 248

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 183 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 235

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 188 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 240

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
          GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 44 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 96

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
          GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 44 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 96

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G+       PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGFYTKLCNYVSWIKQTIA 221

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+          L G+ S+G   CG    PG+YT++  +  WI   MA
Sbjct: 181 GKDTCKGDSGGPLICDG------VLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTMA 234

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNNWLTSTMA 220

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G DSC GDSGGPL+ + N+  +  L G+ S+G  +C +   PG+Y R+  +  WI
Sbjct: 179 GVDSCQGDSGGPLMCQENN--RWLLAGVTSFGY-QCALPNRPGVYARVPRFTEWI 230

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           +DSC GDSGGPL  K+  +    L+G+VS+G   C  G PG+Y+R+  +  WI
Sbjct: 181 RDSCQGDSGGPLSVKDG-SGIFSLVGIVSWGI-GCASGYPGVYSRVGFHAGWI 231

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GD+GGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDAGGPVVCSGK------LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G        PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G        PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GD+GGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDAGGPVVCNGQ------LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 221

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GD+GGP+V          L G+VS+G+       PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDAGGPVVCSGK------LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 177 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 229

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 177 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 229

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 191 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 243

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 179 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 231

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G PG YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWI 250

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 13  VTETKFLVF--PGK-DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRI 69
           +T   F  +   GK DSC GDSGGP+V          L G+VS+G+       PG+YT++
Sbjct: 156 ITSNMFCAYGLEGKGDSCQGDSGGPVVCSGK------LQGIVSWGSGCQAKNKPGVYTKV 209
Query: 70  TAYLPWIIARMA 81
             Y+ WI   +A
Sbjct: 210 CNYVSWIKQTIA 221

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GD+GGP+V          L G+VS+G        PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDAGGPVVCSGK------LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G DSC GDSGGPL     D R  +  G+VS+G        PG+YTR+  +  WI
Sbjct: 183 GVDSCQGDSGGPLSSVEADGRI-FQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP-GIYTRITAYLPWI 76
           GKD+C GDSGGP+V  N +  + YL+G VS+G  +CG     G+Y+ I     WI
Sbjct: 190 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGD-DCGKKDRYGVYSYIHHNKDWI 243

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G DSC GDSGGPL     D R  +  G+VS+G        PG+YTR+  +  WI
Sbjct: 183 GVDSCQGDSGGPLSSVEADGRI-FQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G DSC GDSGGPL     D R  +  G+VS+G        PG+YTR+  +  WI
Sbjct: 183 GVDSCQGDSGGPLSSVEADGRI-FQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP-GIYTRITAYLPWI 76
           GKD+C GDSGGP+V  N +  + YL+G VS+G  +CG     G+Y+ I     WI
Sbjct: 345 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGD-DCGKKDRYGVYSYIHHNKDWI 398

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GD+GGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 179 GKDSCQGDAGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 231

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECGIGSPGIYTRITAYLPWI 76
           GK  C GDSGGP V  +    K+ LIG+VS+ +   C  G P  ++R+T+Y+ WI
Sbjct: 172 GKSPCFGDSGGPFVLSD----KNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G+DSC GDSGGP+V   +      L GLVS+G   C     PG+YT +  +  WI
Sbjct: 171 GRDSCQGDSGGPVVCNGS------LQGLVSWGDYPCARPNRPGVYTNLCKFTKWI 219

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GD+GGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDAGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+V +G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVEWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC G+SGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 177 GKDSCQGNSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 229

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+V +G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVKWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GD GGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDCGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 12/67 (17%)
Query: 16  TKFLVFPG-----KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRI 69
           TKF++  G     K +C+GDSGGPLV          L G+ S+G+  C +   P +YT++
Sbjct: 169 TKFMLCAGRWTGGKSTCSGDSGGPLVCNG------VLQGITSWGSEPCALPERPSLYTKV 222
Query: 70  TAYLPWI 76
             Y  WI
Sbjct: 223 VHYRKWI 229

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 7   HKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGI 65
           +KG  + T    ++  GKD+C GDSGGPL+            G++S G   C     PGI
Sbjct: 153 YKGLAATTLCAGILEGGKDTCKGDSGGPLICNGQ------FQGILSVGGNPCAQPRKPGI 206
Query: 66  YTRITAYLPWI 76
           YT++  Y  WI
Sbjct: 207 YTKVFDYTDWI 217

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWI 250

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 248 DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 299

>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 152

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 76
           GKD+C GDSGGPL+            G+ S+G   CG  + P IYT++  YL WI
Sbjct: 96  GKDTCMGDSGGPLICNG------MWQGITSWGHTPCGSANKPSIYTKLIFYLDWI 144

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GK SC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKSSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 26  SCNGDSGGPLVWKNNDTRKHYLIG-LVSYGTPECGIGSPGIYTRITAYLPWI 76
           +CNGDSGGPL   +  TR   +   +VS G   C    P +YTR++AYL WI
Sbjct: 186 ACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 364 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 415

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWI 76
           GK +CNGDSGGPL +           G+ S+G    C  G P  +TR+T +L WI
Sbjct: 170 GKGTCNGDSGGPLNYNG------LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWI 218

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC  DSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQRDSGGPVVCNGQ------LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIA 221

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 11  ISVTETKFLVF----PGK--DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPG 64
           I +T+  F  +     GK  D+C GDSGGP V K+    + Y +G+VS+G      G  G
Sbjct: 183 IRITDNMFCAYYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYG 242
Query: 65  IYTRITAYLPWI 76
            YT +     WI
Sbjct: 243 FYTHVFRLKKWI 254

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 17  KFLVFPGKD----SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRIT 70
           K +V  G D    +CNGDSGGPL  +  +     + G+VS+G+   C     P +YTR++
Sbjct: 169 KTMVCAGGDGVISACNGDSGGPLNCQLENGSWE-VFGIVSFGSRRGCNTRKKPVVYTRVS 227
Query: 71  AYLPWIIARM 80
           AY+ WI  +M
Sbjct: 228 AYIDWINEKM 237

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRIT-AYLPWIIARM 80
           KDSC GD+GGPL+ K        +   +  G  ECG+ + PGIYT +T  Y  WI + +
Sbjct: 183 KDSCKGDAGGPLICKG-------VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKKWI 250

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKKWI 250

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 235 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 286

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKKWI 250

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACQGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWI 250

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 231 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 282

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           +D+C GDSGG    ++ +T +    G+VS+G   C  G  G YT++  Y+ WI   M  E
Sbjct: 341 QDACQGDSGGVFAVRDPNTDRWVATGIVSWGI-GCSRGY-GFYTKVLNYVDWIKKEMEEE 398

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 235 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 286

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 229 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKKWI 250

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 229 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 229 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 229 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G D+C GDSGGP+  K+N   +   +G+VS+G      G PG+YT ++ +   I
Sbjct: 171 GVDTCQGDSGGPMFRKDN-ADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAI 223

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 228 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 279

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 192 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 243

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin Length = 105

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
          D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 45 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 96

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 231 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 282

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 190 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 241

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 192 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 243

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 193 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 244

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor Length = 102

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
          D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 45 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 96

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 83
           +D+C GDSGG    ++ +T +    G+VS+G   C  G  G YT++  Y+ WI   M  E
Sbjct: 184 QDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CSRGY-GFYTKVLNYVDWIKKEMEEE 241

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+          L G+ S+G   CG    P +  R+ +Y+ WI   +A
Sbjct: 182 GKDTCVGDSGGPLMCDG------VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA 235

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 192 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 243

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G D+C GDSGGP+  K+N   +   +G+VS+G      G PG+YT ++ +   I
Sbjct: 164 GVDTCQGDSGGPMFRKDN-ADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAI 216

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC  D+GGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQRDAGGPVVCNGQ------LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIA 221

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 13  VTETKFL---VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRI 69
           +T++ F    +  GKDSC GDSGGP+V          L G+VS+G        PG+Y ++
Sbjct: 155 ITQSMFCAGYLEGGKDSCQGDSGGPVVCNG------VLQGVVSWGYGCAERDHPGVYAKV 208
Query: 70  TAYLPWIIARMA 81
                W+   MA
Sbjct: 209 CVLSGWVRDTMA 220

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC  D+GGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQRDAGGPVVCNGQ------LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIA 221

>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 109

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 49  DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 100

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G D+C GDSGGP+  K+N   +   +G+VS+G      G PG+YT ++ +   I
Sbjct: 164 GVDTCQGDSGGPMFRKDN-ADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAI 216

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 80
           GKD+C  DSGGPL+          L G  SYG   CG  G P IYT +  +  WI   M
Sbjct: 181 GKDTCRDDSGGPLICDG------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 248 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 299

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 230 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 281

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 15  ETKFLVFPG-----KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRI 69
           E KF V  G     + +  GDSGGPL+            G+VSYG P+     P I+TR+
Sbjct: 161 EYKFQVCVGSPTTLRAAFMGDSGGPLLCAGVAH------GIVSYGHPDAK--PPAIFTRV 212
Query: 70  TAYLPWIIA 78
           + Y+PWI A
Sbjct: 213 STYVPWINA 221

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 200 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 251

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWIIARMA 81
           G+D+C+GDSGGPL+          + G+V+ G+  CG    P +YT++  Y  WI + +A
Sbjct: 172 GRDTCHGDSGGPLICNGE------MHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGG    ++ +T +    G+VS+G   C  G  G YT++  Y+ WI   M
Sbjct: 273 QDACQGDSGGVFAVRDPNTDRWVATGIVSWGI-GCSRGY-GFYTKVLNYVDWIKKEM 327

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWI 250

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           K+S +GDSGGPLV            G+VSYG  +    +P +YTRI+++L WI + M
Sbjct: 175 KNSFSGDSGGPLVCNG------VAQGIVSYGRNDGT--TPDVYTRISSFLSWIHSTM 223

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 7   HKGDISVTETKFLVFP---GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP 63
           H+G +++ E++        G   C GD GGPLV + +  R   ++G++  G        P
Sbjct: 152 HRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMR--MVLGVIVPGRGCAIPNRP 209
Query: 64  GIYTRITAYLPWI 76
           GI+ R+  Y  WI
Sbjct: 210 GIFVRVAYYAKWI 222

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 7   HKGDISVTETKFLVFP---GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP 63
           H+G +++ E++        G   C GD GGPLV + +  R   ++G++  G        P
Sbjct: 152 HRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMR--MVLGVIVPGRGCAIPNRP 209
Query: 64  GIYTRITAYLPWI 76
           GI+ R+  Y  WI
Sbjct: 210 GIFVRVAYYAKWI 222

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C GDSGGP V K+    + Y +G+VS G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWI 250

>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With Benzamidine Length = 223

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G D C GDSGGP+  K+N   +   +G+VS+G      G PG+YT ++ +   I
Sbjct: 164 GVDPCQGDSGGPMFRKDN-ADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAI 216

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GK SC GDSGGP+V          L G+VS+G       +P +YT++  Y+ WI   +A
Sbjct: 169 GKGSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPDVYTKVCNYVDWIQDTIA 221

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           K +  GDSGGPL+  N         G+VSYG    G+  P ++TR++++LPWI   M
Sbjct: 174 KAAFKGDSGGPLLCNN------VAHGIVSYGKSS-GV-PPEVFTRVSSFLPWIRTTM 222

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           D+C  DSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEADSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           K +  GDSGGPL+  N         G+VSYG    G+  P ++TR++++LPWI   M
Sbjct: 174 KAAFKGDSGGPLLCNN------VAHGIVSYGKSS-GV-PPEVFTRVSSFLPWIRTTM 222

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           GKD+C GDSGGPL+            G+ S+G   C     P  YT++  +L WI
Sbjct: 176 GKDTCKGDSGGPLICNGQ------FQGIASWGDDPCAQPHKPAAYTKVFDHLDWI 224

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYL-IGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           GKD+C GD G PL   +      Y+ +G+V++G        PG+Y  +  +  WI   M
Sbjct: 324 GKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEM 382

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	1e-23
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	2e-23
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	3e-23
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	1e-22
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	5e-22
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	8e-22
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	4e-21
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	6e-21
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	7e-21
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	8e-21
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	8e-21
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	9e-21
1md8_A	329	C1R complement serine protease; innate immunity, a	1e-20
1gpz_A	399	Complement C1R component; hydrolase, activation, i	1e-20
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	3e-20
1elv_A	333	Complement C1S component; trypsin-like serin prote	3e-20
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	3e-20
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	3e-20
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	9e-20
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	9e-20
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	1e-19
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	1e-19
1aut_C	250	Activated protein C; serine proteinase, plasma cal	1e-19
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	1e-19
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	1e-19
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	1e-19
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	2e-19
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	2e-19
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	2e-19
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	2e-19
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	2e-19
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	2e-19
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	2e-19
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	3e-19
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	4e-19
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	4e-19
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	4e-19
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	5e-19
1a7s_A	225	Heparin binding protein; serine protease homolog,	5e-19
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	5e-19
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	5e-19
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	5e-19
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	5e-19
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	5e-19
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	5e-19
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	6e-19
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	6e-19
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	6e-19
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	7e-19
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	7e-19
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	8e-19
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	9e-19
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	9e-19
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-18
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	1e-18
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	1e-18
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	1e-18
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	1e-18
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	1e-18
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	1e-18
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	1e-18
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	2e-18
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	2e-18
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	2e-18
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	2e-18
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	2e-18
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	3e-18
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	3e-18
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	3e-18
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	3e-18
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	4e-18
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	5e-18
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	7e-18
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	8e-18
2aiq_A	231	Protein C activator; snake venom serine proteinase	9e-18
3hrz_D	741	Complement factor B; serine protease, glycosilated	1e-17
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	1e-17
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	1e-17
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	1e-17
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	1e-17
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	1e-17
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	1e-17
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	1e-17
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	2e-17
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	2e-17
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	2e-17
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	2e-17
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-17
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	3e-17
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	1e-16
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	5e-15
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	1e-04
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	2e-04
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	3e-04
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	3e-04
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	5e-04
1hpg_A	187	Glutamic acid specific protease; serine protease,	7e-04
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	8e-04

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score = 89.7 bits (223), Expect = 1e-23
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 80
            KDSC GDSGGPL+ +  + +  +L GLVS+G   CG  G PGIYT++  Y  WI   +
Sbjct: 220 AKDSCGGDSGGPLLAERANQQ-FFLEGLVSFG-ATCGTEGWPGIYTKVGKYRDWIEGNI 276

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score = 88.5 bits (220), Expect = 2e-23
 Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI   ++
Sbjct: 181 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score = 89.9 bits (223), Expect = 3e-23
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKH----YLIGLVSYGTPECGI-GSPGIYTRITAYLPWII 77
            +DSC GDSGGPL        ++       G+VS G   CG    PG+YT +  Y+ WI 
Sbjct: 310 LQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWIT 369

Query: 78  ARMA 81
             MA
Sbjct: 370 DTMA 373

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score = 88.3 bits (219), Expect = 1e-22
 Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI   ++
Sbjct: 342 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score = 84.6 bits (210), Expect = 5e-22
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
             +DSC GDSGGPL  K+       L+G+VS+G   C  G PG+Y+R+  +  WI   + 
Sbjct: 179 TDRDSCQGDSGGPLSVKDGSGI-FSLVGIVSWGI-GCASGYPGVYSRVGFHAGWITDTIT 236

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score = 83.4 bits (207), Expect = 8e-22
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 7/59 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           G+ +C+GDSGGPLV           IG+VS+G+P C +G P +YTR+++++ WI A + 
Sbjct: 170 GEGACHGDSGGPLVANG------AQIGIVSFGSP-CALGEPDVYTRVSSFVSWINANLK 221

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score = 81.9 bits (203), Expect = 4e-21
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
            +D+C GDSGGP V +  DT  +++ G+VS+G   C   G  GIYT++TA+L WI   M 
Sbjct: 177 QEDACQGDSGGPHVTRFKDT--YFVTGIVSWGE-GCARKGKYGIYTKVTAFLKWIDRSMK 233

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score = 81.5 bits (202), Expect = 6e-21
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 82
            +D+C GDSGG    ++ +T +    G+VS+G   C     G YT++  Y+ WI   M  
Sbjct: 183 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWGI-GCS-RGYGFYTKVLNYVDWIKKEMEE 240

Query: 83  E 83
           E
Sbjct: 241 E 241

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score = 81.6 bits (202), Expect = 7e-21
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V  N +  + YL+G VS+G  +CG     G+Y+ I     WI     
Sbjct: 190 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGD-DCGKKDRYGVYSYIHHNKDWIQRVTG 248

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score = 77.6 bits (192), Expect = 8e-21
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
          G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 39 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score = 81.1 bits (201), Expect = 8e-21
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM 80
             +DSC GD+GGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + +
Sbjct: 174 NRRDSCKGDAGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227

Query: 81  A 81
           A
Sbjct: 228 A 228

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score = 81.1 bits (201), Expect = 9e-21
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA 81
            +  C GDSGGPLV          L G++S+ +  C     P + T +  Y+ WI     
Sbjct: 174 DQAPCKGDSGGPLVCGK----GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTG 229

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score = 82.1 bits (203), Expect = 1e-20
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
            +D+C GDSGG    ++ +T +    G+VS+G   C     G YT++  Y+ WI   M 
Sbjct: 272 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWG-IGCS-RGYGFYTKVLNYVDWIKKEME 328

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score = 82.5 bits (204), Expect = 1e-20
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 82
            +D+C GDSGG    ++ +T +    G+VS+G   C     G YT++  Y+ WI   M  
Sbjct: 340 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWG-IGCS-RGYGFYTKVLNYVDWIKKEMEE 397

Query: 83  E 83
           E
Sbjct: 398 E 398

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score = 79.5 bits (197), Expect = 3e-20
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
            +D+C GDSGGP+  K+N       +G+VS+G   C   G  G+YT ++ +   I +   
Sbjct: 165 QEDTCQGDSGGPMFRKDNADE-WVQVGIVSWGE-GCARKGKYGVYTEVSTFASAIASAAR 222

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score = 81.0 bits (200), Expect = 3e-20
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLV-WKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           G DSC GDSGG       ND  K Y  GLVS+G P+C  G+ G+YTR+  Y+ WI+  M 
Sbjct: 269 GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWG-PQC--GTYGLYTRVKNYVDWIMKTMQ 325

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score = 79.5 bits (197), Expect = 3e-20
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 80
           G DSC GDSGGPL+ + N+    +L G+ S+G  EC     PG+Y R++ +  WI + +
Sbjct: 179 GIDSCQGDSGGPLMCQENNR--WFLAGVTSFGY-ECALPNRPGVYARVSRFTEWIQSFL 234

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score = 79.2 bits (196), Expect = 3e-20
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 82
           G    +GD+G P V ++       L+G+ +Y       G+P ++T++ +Y+ WI   +  
Sbjct: 175 GVSLESGDAGDPTVQQD------TLVGVAAYFPK-RPEGAPEVFTKVGSYVSWIQDIIKK 227

Query: 83  E 83
           +
Sbjct: 228 K 228

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score = 78.4 bits (194), Expect = 9e-20
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPLV K+N      L+G+ S+G   C     PG+YT++  Y+ WI+ +  
Sbjct: 180 GKDACKGDSGGPLVCKHNGM--WRLVGITSWGE-GCARREQPGVYTKVAEYMDWILEKTQ 236

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score = 78.4 bits (194), Expect = 9e-20
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 80
           G+DSC GDSGGP V +   T   +L G++S+G  EC   G  GIYT+++ Y+ WI  + 
Sbjct: 177 GRDSCQGDSGGPHVTEVEGT--SFLTGIISWGE-ECAMKGKYGIYTKVSRYVNWIKEKT 232

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score = 78.4 bits (194), Expect = 1e-19
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
            KDSC GDSGGP       T   YL G+VS+G   C  +G  G+YTR++ Y+ W+   M 
Sbjct: 184 SKDSCKGDSGGPHATHYRGT--WYLTGIVSWGQ-GCATVGHFGVYTRVSQYIEWLQKLMR 240

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score = 78.0 bits (193), Expect = 1e-19
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL  K+N+    +L+G+ S+G   C     PG+YT +  Y+ WI+ +  
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGE-GCAQRERPGVYTNVVEYVDWILEKTQ 236

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score = 78.5 bits (194), Expect = 1e-19
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
            +D+C GDSGGP+V   + T   +L+GLVS+G   CG+  + G+YT+++ YL WI   + 
Sbjct: 183 RQDACEGDSGGPMVASFHGT--WFLVGLVSWGE-GCGLLHNYGVYTKVSRYLDWIHGHIR 239

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score = 79.0 bits (195), Expect = 1e-19
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             D+C GDSGGPL+ K++    + ++G+ S+G   C     PG+YT   +YL WI +++ 
Sbjct: 191 KIDTCQGDSGGPLMCKDSAENSYVVVGITSWGV-GCARAKRPGVYTSTWSYLNWIASKIG 249

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score = 78.1 bits (193), Expect = 1e-19
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             D+C GDSGGP V K+    + Y +G+VS+G   C   G  G YT +     WI   + 
Sbjct: 197 RGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE-GCDRDGKYGFYTHVFRLKKWIQKVID 255

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score = 77.6 bits (192), Expect = 1e-19
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 76
               C GDSG PLV          + G+ S+    C  G  P  +  +  ++ WI
Sbjct: 165 QAGVCFGDSGSPLVCNG------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 79.9 bits (197), Expect = 2e-19
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL  K+N+    +L+G+ S+G   C     PG+YT +  Y+ WI+ +  
Sbjct: 567 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGE-GCAQRERPGVYTNVVEYVDWILEKTQ 623

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score = 78.6 bits (194), Expect = 2e-19
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             D+C GDSGGP V K+    + Y +G+VS+G   C   G  G YT +     WI   + 
Sbjct: 227 RGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE-GCDRDGKYGFYTHVFRLKKWIQKVID 285

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score = 77.2 bits (191), Expect = 2e-19
 Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGPLV         +L GLVS+G   CG    PG+YT +  Y  WI   + 
Sbjct: 168 GKDSCQGDSGGPLV------CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 80
           GKDSC GDSGGPL   +  +   YL G+VS+G   C   G PG+YT ++ ++ WI A  
Sbjct: 181 GKDSCQGDSGGPLAASDTGS--TYLAGIVSWGY-GCARPGYPGVYTEVSYHVDWIKANA 236

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score = 77.2 bits (191), Expect = 2e-19
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 76
               C GDSGGPL+          + G+ S+    C     P  +TR+  Y+ WI
Sbjct: 168 KAGICFGDSGGPLICDG------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWI 216

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           G DSC GDSGGPL     D R  +  G+VS+G   C     PG+YTR+  +  WI     
Sbjct: 183 GVDSCQGDSGGPLSSVEADGR-IFQAGVVSWGD-GCAQRNKPGVYTRLPLFRDWIKENTG 240

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score = 77.3 bits (191), Expect = 3e-19
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+          L G+ S+G   CG    P +  R+ +Y+ WI   +A
Sbjct: 182 GKDTCVGDSGGPLMCDG------VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA 235

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score = 76.9 bits (190), Expect = 4e-19
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             D+C GDSGGPL  + N     YL G++S+G   CG    PG+YTR+  Y+ WI  R+ 
Sbjct: 183 KSDACQGDSGGPLACEKNGV--AYLYGIISWGD-GCGRLHKPGVYTRVANYVDWINDRIR 239

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score = 77.4 bits (191), Expect = 4e-19
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             D+C GDSGGPL  + N     YL G++S+G   CG    PG+YTR+  Y+ WI  R+ 
Sbjct: 218 KSDACQGDSGGPLACEKNGV--AYLYGIISWGD-GCGRLHKPGVYTRVANYVDWINDRIR 274

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score = 76.4 bits (189), Expect = 4e-19
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
            KDSCNGDSGGPL+         YL GLVS+G   CG  G PG+YT +  +  WI   + 
Sbjct: 169 QKDSCNGDSGGPLICNG------YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score = 76.9 bits (190), Expect = 5e-19
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             DSC GDSGGPLV          L G+VS+G   C +   PG+YTR++ +LPWI +   
Sbjct: 190 KTDSCQGDSGGPLVCSLQGR--MTLTGIVSWGR-GCALKDKPGVYTRVSHFLPWIRSHTK 246

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score = 76.4 bits (189), Expect = 5e-19
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
               CNGD G PLV +          G+ S+    CG G P  +TR+  +  WI
Sbjct: 167 RGGICNGDGGTPLVCEG------LAHGVASFSLGPCGRG-PDFFTRVALFRDWI 213

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score = 76.4 bits (189), Expect = 5e-19
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           GK +CNGDSGGPL +           G+ S+G       G P  +TR+T +L WI  +  
Sbjct: 170 GKGTCNGDSGGPLNYNG------LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTG 223

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score = 76.5 bits (189), Expect = 5e-19
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 80
             D+C GDSGGPLV  +      YL G+VS+G  EC     PG+YTR+TA   WI ++ 
Sbjct: 174 KTDACQGDSGGPLVSSDARDI-WYLAGIVSWGD-ECAKPNKPGVYTRVTALRDWITSKT 230

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score = 76.5 bits (189), Expect = 5e-19
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
                 GD+G P V          L+G+ SY +       P ++ R+  Y+  I   ++
Sbjct: 178 ETYIGYGDAGDPAVQNG------TLVGVASYISS-MPSEFPSVFLRVGYYVLDIKDIIS 229

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score = 76.0 bits (188), Expect = 5e-19
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           G D+C GDSGGPLV          L G+ S+G+  CG    PG+YT+I  Y  WI
Sbjct: 172 GADTCQGDSGGPLVCDG------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWI 220

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score = 77.9 bits (192), Expect = 5e-19
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHY-LIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 79
            GKD+C GD G PL   +      Y  +G+V++G   CG    PG+Y  +  +  WI   
Sbjct: 323 QGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGI-GCGDENVPGVYANVAHFRNWIDQE 381

Query: 80  MA 81
           M 
Sbjct: 382 MQ 383

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score = 76.5 bits (189), Expect = 5e-19
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           G DSC GD+GGPLV    D   + L G+ S+G   C     PG+Y R++ ++ WI   M 
Sbjct: 189 GTDSCQGDAGGPLVCFEKDK--YILQGVTSWGL-GCARPNKPGVYVRVSRFVTWIEGVMR 245

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 78.4 bits (193), Expect = 6e-19
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG---------IGSPGIYTRITAY 72
             ++C GDSGGPL+           +G++S+G  + C            +   +  +   
Sbjct: 424 DPNTCRGDSGGPLIVHKRSR--FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 481

Query: 73  LPWIIARMAYEV 84
           LPW+  ++  E 
Sbjct: 482 LPWLKEKLQDED 493

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 76.5 bits (189), Expect = 6e-19
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECG-IGSPGIYTRITAYLPWIIARM 80
              +CNGDSGGPL  + +      + G+VS+G+   C     P ++TR++AY+ WI  ++
Sbjct: 192 VISACNGDSGGPLNCQADGQ--WDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score = 76.1 bits (188), Expect = 6e-19
 Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C  DSGGPL+          L G  SYG   CG  G P IYT +  +  WI   M 
Sbjct: 181 GKDTCRDDSGGPLICDG------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score = 76.6 bits (189), Expect = 7e-19
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL          YL G+VS+G   CG    PG+YT  ++Y  WI +++ 
Sbjct: 186 GKDACQGDSGGPLSCPVEGL--WYLTGIVSWGD-ACGARNRPGVYTLASSYASWIQSKVT 242

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score = 76.1 bits (188), Expect = 7e-19
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG-IGSPGIYTRITAYLPWIIARM 80
            +  CNGDSGGPL     D     + G+ S+ +   C  I  P ++TR++A++ WI   +
Sbjct: 179 TRSGCNGDSGGPLNCPAADGS-WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237

Query: 81  A 81
           A
Sbjct: 238 A 238

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score = 75.7 bits (187), Expect = 8e-19
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWI 76
           GK  C GDSGGP V  + +     LIG+VS+ +   C  G P  ++R+T+Y+ WI
Sbjct: 172 GKSPCFGDSGGPFVLSDKNL----LIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score = 75.7 bits (187), Expect = 9e-19
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           G  +C  DSGGPL+          L G+ S+G   CG    P +YT++  +  WI   MA
Sbjct: 184 GSYTCEHDSGGPLICDG------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score = 75.7 bits (187), Expect = 9e-19
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GK +C+GDSGGPLV          L G+ S+G+  C +   P +YT++  Y  WI   + 
Sbjct: 181 GKSTCSGDSGGPLVCNG------VLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV 234

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 77.7 bits (191), Expect = 1e-18
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 80
             D+C GDSGGPLV  + +    Y+ G+VS+G   CG    PG+YT++  Y  WI   +
Sbjct: 499 SIDACKGDSGGPLVCMDANNV-TYVWGVVSWGE-NCGKPEFPGVYTKVANYFDWISYHV 555

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score = 75.7 bits (187), Expect = 1e-18
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           G   C GD GGPLV + +      ++G++  G   C I   PGI+ R+  Y  WI   + 
Sbjct: 171 GSGPCEGDYGGPLVCEQHKM--RMVLGVIVPGR-GCAIPNRPGIFVRVAYYAKWIHKIIL 227

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score = 75.7 bits (187), Expect = 1e-18
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+          L G+ S G   C    +P IY ++  +  WI   M 
Sbjct: 179 GKDTCAGDSGGPLICDG------VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score = 75.2 bits (186), Expect = 1e-18
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
            K +  GDSGGPL+  N         G+VSYG    G+  P ++TR++++LPWI   M 
Sbjct: 173 RKAAFKGDSGGPLLCNN------VAHGIVSYGKS-SGV-PPEVFTRVSSFLPWIRTTMR 223

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 77.2 bits (190), Expect = 1e-18
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
             D+C GDSGGP V K+    + Y +G+VS+G   C   G  G YT +     WI   + 
Sbjct: 362 RGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE-GCDRDGKYGFYTHVFRLKKWIQKVID 420

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 75.4 bits (186), Expect = 1e-18
 Identities = 30/60 (50%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
            +DSC GDSGGPLV K N T      G+VS+G   C     PGIYTR+T YL WI   + 
Sbjct: 186 QRDSCQGDSGGPLVCKVNGT--WLQAGVVSWGE-GCAQPNRPGIYTRVTYYLDWIHHYVP 242

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score = 75.3 bits (186), Expect = 1e-18
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
               C GDSGG L+            G+ S+G  EC       ++T++  +  WI   + 
Sbjct: 181 SGSICLGDSGGALICDG------VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score = 75.3 bits (186), Expect = 1e-18
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 80
              SCNGDSGGPL  +  + +   + G+VS+G+   C     P ++TR++ Y+ WI + +
Sbjct: 180 IISSCNGDSGGPLNCQGANGQ-WQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238

Query: 81  A 81
           A
Sbjct: 239 A 239

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 75.3 bits (186), Expect = 2e-18
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 80
            +  C GDSGGPL    N    + + G+ S+ +   C +   P ++TR++AY+ WI   +
Sbjct: 180 VRSGCQGDSGGPLHCLVNGQ--YAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

Query: 81  A 81
           A
Sbjct: 238 A 238

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score = 74.9 bits (185), Expect = 2e-18
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           G+D+C+GDSGGPL+          + G+V+ G+  CG    P +YT++  Y  WI + +A
Sbjct: 172 GRDTCHGDSGGPLICNG------EMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score = 76.7 bits (189), Expect = 2e-18
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 79
           G D+C GDSGGP V +++ +R  +  L G+VS+GT  C +   PG+YT+++ +  WI   
Sbjct: 300 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGT-GCALAQKPGVYTKVSDFREWIFQA 358

Query: 80  MA 81
           + 
Sbjct: 359 IK 360

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 74.9 bits (185), Expect = 2e-18
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           G  SC GDSGGPLV K N      L+G+VS+G+       +PG+Y R+TA + W+   +A
Sbjct: 187 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGS-STCSTSTPGVYARVTALVNWVQQTLA 243

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score = 74.5 bits (184), Expect = 2e-18
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 11/62 (17%)

Query: 23  GKDSCNGDSGGPLV--WKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 79
            K++CNGDSGGPLV            L GLVS+GT  CG    PG+YT++  +  WI   
Sbjct: 168 KKNACNGDSGGPLVCRG--------TLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT 219

Query: 80  MA 81
           M 
Sbjct: 220 MK 221

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score = 74.6 bits (184), Expect = 3e-18
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 9/59 (15%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-----SPGIYTRITAYLPWI 76
              +CNGDSGGPL   +  T    ++G+ S+     G+G      P +YTR++AYL WI
Sbjct: 183 NTGACNGDSGGPLNCPDGGT---RVVGVTSWVVS-SGLGACLPDYPSVYTRVSAYLGWI 237

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score = 74.6 bits (184), Expect = 3e-18
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 80
              D+C GDSGGPLV  N+      L+G++S+G   CG    PG+YT++T YL WI   M
Sbjct: 194 NLHDACQGDSGGPLVCLNDGR--MTLVGIISWGL-GCGQKDVPGVYTKVTNYLDWIRDNM 250

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score = 74.2 bits (183), Expect = 3e-18
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 80
              +C GD GGPL    +++    L G++      C     P ++TR++ ++ WI   M
Sbjct: 170 PVGACEGDYGGPLACFTHNS--WVLEGIIIPNR-VCARSRWPAVFTRVSVFVDWIHKVM 225

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score = 74.1 bits (183), Expect = 3e-18
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           G+DSC GDSGGP+V          L GLVS+G   C     PG+YT +  +  WI   + 
Sbjct: 171 GRDSCQGDSGGPVVCNG------SLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 74.7 bits (184), Expect = 4e-18
 Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
              + +   G  +  ++  +   +L G++       G      + T+++ Y  W    M 
Sbjct: 221 SVAAMHWMDGSVVTREHRGS--WFLTGVLGSQ--PVGGQAHMVLVTKVSRYSLWFKQIMN 276

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score = 73.7 bits (182), Expect = 5e-18
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+            G+VS+G   CG    PG+YT++  Y  WI + +A
Sbjct: 172 GKDTCGGDSGGPLICNG------QFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 74.4 bits (183), Expect = 7e-18
 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 80
              + +   G  +  ++  +   +L G++       G      + T+++ Y  W    M
Sbjct: 262 SVAAMHWMDGSVVTREHRGS--WFLTGVLGSQ--PVGGQAHMVLVTKVSRYSLWFKQIM 316

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score = 72.9 bits (180), Expect = 8e-18
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
            K S  GDSGGPLV            G+VSYG    G+  P   T++++++ WI
Sbjct: 175 KKTSFKGDSGGPLVCNK------VAQGIVSYGRN-NGM-PPRACTKVSSFVHWI 220

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score = 73.0 bits (180), Expect = 9e-18
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+            G++S G   C     PGIYT++  Y  WI + ++
Sbjct: 169 GKDTCKGDSGGPLICNG------QFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 74.7 bits (183), Expect = 1e-17
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG---------IGSPGIYTRITAY 72
             ++C GDSGGPL+           +G++S+G  + C            +   +  +   
Sbjct: 666 DPNTCRGDSGGPLIVHKRSR--FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 723

Query: 73  LPWIIARMAYEV 84
           LPW+  ++  E 
Sbjct: 724 LPWLKEKLQDED 735

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score = 73.0 bits (180), Expect = 1e-17
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRIT-AYLPWIIARM 80
            KDSC GD+GGPL+ K           +VS G   CG+   PGIYT +T  Y  WI + +
Sbjct: 182 QKDSCKGDAGGPLICKG------VFHAIVSGGHE-CGVATKPGIYTLLTKKYQTWIKSNL 234

Query: 81  A 81
            
Sbjct: 235 V 235

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score = 72.6 bits (179), Expect = 1e-17
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+            G+ S+G   C     P  YT++  +L WI   +A
Sbjct: 176 GKDTCKGDSGGPLICNG------QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIA 229

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score = 71.0 bits (175), Expect = 1e-17
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGPL+            G+ S+G   CG    P IYT++  YL WI   + 
Sbjct: 96  GKDTCMGDSGGPLICNG------MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score = 72.5 bits (179), Expect = 1e-17
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 10/55 (18%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 76
            K+S +GDSGGPLV            G+VSYG      G+ P +YTRI+++L WI
Sbjct: 174 RKNSFSGDSGGPLVCNG------VAQGIVSYG---RNDGTTPDVYTRISSFLSWI 219

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 8/60 (13%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G   C   G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNG------ELQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLTSTMA 220

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
            + +  GDSGGPL+            G+VSYG P      P I+TR++ Y+PWI
Sbjct: 174 LRAAFMGDSGGPLLCAG------VAHGIVSYGHP-DAK-PPAIFTRVSTYVPWI 219

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 8/60 (13%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G+  C     PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSG------KLQGIVSWGSG-CAQKNKPGVYTKVCNYVSWIKQTIA 221

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score = 72.6 bits (179), Expect = 2e-17
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRIT-AYLPWI 76
           G+DSCNGDSG PL+ +          G+ S+G    CG    PG+Y  ++  +L WI
Sbjct: 176 GRDSCNGDSGSPLLCEG------VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI 226

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score = 72.2 bits (178), Expect = 2e-17
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
           GKDSC GDSGGP+V  +N      LIG VS+G   C      G+Y  + A   +I
Sbjct: 172 GKDSCQGDSGGPIVDSSN-----TLIGAVSWGN-GCARPNYSGVYASVGALRSFI 220

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 72.2 bits (178), Expect = 2e-17
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 80
               CNGDSGGPL  + N +  +Y+ G+ S+ +   C     P ++TR++AY+ W+   M
Sbjct: 179 ANSGCNGDSGGPLNCQVNGS--YYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score = 71.8 bits (177), Expect = 2e-17
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA 81
            K +  GDSGGPL+            G+VSYG         P ++TRI+ Y PWI   + 
Sbjct: 174 TKSAFKGDSGGPLLCAG------VAQGIVSYG---RSDAKPPAVFTRISHYRPWINQILQ 224

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score = 71.8 bits (177), Expect = 2e-17
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 10/55 (18%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 76
              S   DSGGPLV K          G+VSYG      GS P ++TR+ +++ WI
Sbjct: 176 KGASFEEDSGGPLVCKR------AAAGIVSYG---QTDGSAPQVFTRVLSFVSWI 221

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score = 71.8 bits (177), Expect = 3e-17
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G   C     PG+YT++  Y+ WI   +A
Sbjct: 173 GKDSCQGDSGGPVVCNG------QLQGVVSWGDG-CAQKNKPGVYTKVYNYVKWIKNTIA 225

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 71.9 bits (176), Expect = 1e-16
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 19/76 (25%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-----------------PGI 65
            +  C G+SGG +  +       + +GLVS+G     +GS                    
Sbjct: 428 DESPCKGESGGAVFLERRFR--FFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDF 485

Query: 66  YTRITAYLPWIIARMA 81
           +  +    PW+   + 
Sbjct: 486 HINLFRMQPWLRQHLG 501

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 67.0 bits (163), Expect = 5e-15
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           G DSC GDSGGPLV    D     L G+ S+G   C     PG+Y R++ ++ WI   M 
Sbjct: 733 GTDSCQGDSGGPLVCFEKDKY--ILQGVTSWGL-GCARPNKPGVYVRVSRFVTWIEGVMR 789

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITA-YLPWI 76
           D+ +G+SG  ++      +   ++G+ + G      G+     + TA ++ +I
Sbjct: 165 DTFSGNSGSAML-----DQNQQIVGVHNAGYSN---GTINGGPKATAAFVEFI 209

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca} Length = 186

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 26  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 73
           +  GDSGGP +  +         G+ S GT +C  G    +  I   L
Sbjct: 135 AEGGDSGGPWLTGS------QAQGVTSGGTGDCRSGGITFFQPINPLL 176

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A Length = 181

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 26  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 73
           +  GDSGG L   +        +GL S G+  C  G    Y  +T  L
Sbjct: 132 AQPGDSGGSLFAGS------TALGLTSGGSGNCRTGGTTFYQPVTEAL 173

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ... Length = 185

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 29  GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 73
           GDSGGPL            IGL S G+  C  G    +  +T  L
Sbjct: 139 GDSGGPLYSGT------RAIGLTSGGSGNCSSGGTTFFQPVTEAL 177

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis} Length = 189

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 26  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 73
           +  GDSGG L+  N         G+ S G+  C  G    +  +   L
Sbjct: 132 AEPGDSGGSLLAGN------QAQGVTSGGSGNCRTGGTTFFQPVNPIL 173

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1 Length = 187

 Score = 35.2 bits (81), Expect = 7e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)

Query: 29  GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 73
           GDSGG     +        +G+ S  +   G     I+  +T  L
Sbjct: 141 GDSGGAHFAGS------VALGIHSGSSGCSGTAGSAIHQPVTEAL 179

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba} Length = 188

 Score = 35.3 bits (81), Expect = 8e-04
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 26  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 73
           +  GDSGG  +            G+ S G+  C  G    Y  +   L
Sbjct: 138 AEPGDSGGSFISGT------QAQGVTSGGSGNCRTGGTTFYQEVNPML 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.93
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	99.92
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	99.89
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	99.89
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	99.89
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	99.89
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	99.88
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	99.88
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	99.88
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.88
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	99.88
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	99.88
1aut_C	250	Activated protein C; serine proteinase, plasma cal	99.88
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	99.88
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	99.88
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	99.88
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	99.88
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	99.88
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	99.87
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	99.87
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	99.87
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	99.87
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	99.87
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	99.87
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	99.87
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	99.87
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	99.87
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	99.87
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	99.87
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	99.87
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	99.87
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	99.87
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	99.87
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	99.87
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	99.87
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	99.86
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	99.86
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	99.86
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	99.86
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	99.86
1md8_A	329	C1R complement serine protease; innate immunity, a	99.86
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	99.86
1elv_A	333	Complement C1S component; trypsin-like serin prote	99.86
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	99.85
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	99.85
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	99.85
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	99.85
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	99.85
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	99.85
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	99.85
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	99.85
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	99.85
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	99.85
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	99.84
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	99.84
1gpz_A	399	Complement C1R component; hydrolase, activation, i	99.84
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	99.84
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	99.84
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	99.84
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	99.84
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	99.84
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	99.83
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.83
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	99.83
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	99.83
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	99.83
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	99.83
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	99.83
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	99.83
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	99.83
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	99.82
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	99.82
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	99.82
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	99.82
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	99.82
2aiq_A	231	Protein C activator; snake venom serine proteinase	99.82
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	99.82
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	99.82
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.81
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	99.81
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	99.81
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	99.81
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	99.8
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.8
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	99.8
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	99.79
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	99.79
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	99.79
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	99.78
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	99.78
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	99.76
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.76
1a7s_A	225	Heparin binding protein; serine protease homolog,	99.76
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	99.73
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	99.56
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.45
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.41
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.22
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.15
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.11
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.09
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.07
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	98.64
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	98.63
1hpg_A	187	Glutamic acid specific protease; serine protease,	98.62
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	98.38
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	98.3
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	98.23
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.99
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	97.94
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	97.7
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	97.47
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	97.47
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	97.46
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.22
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.2
3k6y_A	237	Serine protease, possible membrane-associated seri	97.17
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	97.14
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	96.75
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	96.7
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	96.69
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	96.46
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	96.31
3syj_A	1011	Adhesion and penetration protein autotransporter;	96.18
3h09_A	989	IGA1 protease, immunoglobulin A1 protease; serine	95.39
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	95.15
3sze_A	968	Serine protease ESPP; parallel beta-helix, hydrola	95.1
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	94.8
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	91.75
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	90.19
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	88.89
2w5e_A	163	Putative serine protease; coiled coil, transmembra	87.84
2hrv_A	142	2A cysteine proteinase; hydrolase (cysteine protei	84.96
1z8r_A	166	Coxsackievirus B4 polyprotein; beta barrel coordin	84.82
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	84.22
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	80.08

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.93  E-value=3.8e-27  Score=133.08  Aligned_cols=71  Identities=38%  Similarity=0.704  Sum_probs=61.1

Q ss_pred             CCCCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         10 DISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        10 ~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...+++.||| +..+.++|+|||||||++... + +|+|+||+||+.. |.... |+|||||+.|++||+++++.+
T Consensus        25 ~~~i~~~~iCa~~~~~~~C~GDSGGPL~~~~~-~-~~~l~GIvS~g~~-c~~~~~p~vyt~V~~y~~WI~~~~~~n   97 (97)
T 1yph_E           25 GTKIKDAMICAGASGVSSCMGDSGGPLVCKKN-G-AWTLVGIVSWGSS-TCSTSTPGVYARVTALVNWVQQTLAAN   97 (97)
T ss_dssp             GGGCCTTEEEEECSSCBCCTTCTTCEEEEEET-T-EEEEEEEEEECCT-TCCTTSEEEEEEHHHHHHHHHHHHHHC
T ss_pred             cCCCCCceEeecCCCCCCCcCCCCCcEEEEeC-C-eEEEEEEEEeCCC-CCCCCCCeEEEEHHHhHHHHHHHHccC
Confidence            3458899999 766679999999999999864 4 4999999999987 76555 999999999999999998754

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=99.92  E-value=7e-25  Score=146.73  Aligned_cols=73  Identities=27%  Similarity=0.570  Sum_probs=63.6

Q ss_pred             CCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         10 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        10 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...++++||| +  .+++++|+|||||||++....+.+|+|+||+|||.. |....|+|||||+.|++||+++|++|
T Consensus       272 ~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~~lvGIvS~G~~-C~~~~pgVYTrVs~y~~WI~~~i~~N  347 (347)
T 4f4o_C          272 QPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKS-CRTAEYGVYVRVTSILDWIQTTIADN  347 (347)
T ss_dssp             CCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEEEEEEEEEECCC-TTTSSCEEEEEHHHHHHHHHHHHTC-
T ss_pred             cccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEEEeCCC-CCCCCCeEEEEHHHHHHHHHHHHHcC
Confidence            4468899999 7  567899999999999997654556999999999988 98766999999999999999999875

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=99.89  E-value=4.2e-23  Score=133.00  Aligned_cols=70  Identities=41%  Similarity=0.774  Sum_probs=60.4

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ..+.+.++| +  ....++|+|||||||++..+ + +|+|+||+|||.. |.... |+|||||++|++||+++|+++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~~-~-~~~lvGIvS~G~~-C~~~~~P~vyt~V~~y~~WI~~~~~~~  271 (276)
T 2vnt_A          198 SEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-G-RMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSHTKEE  271 (276)
T ss_dssp             GGSCTTEEEEECTTSCCCCCTTCTTCEEEEEET-T-EEEEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHHHHSCC
T ss_pred             cccCccceeeccCCCCCCCCCCCCCCeEEEeeC-C-eEEEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHhhhh
Confidence            345677787 4  56789999999999999875 4 4999999999998 98777 999999999999999999864

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=99.89  E-value=4e-23  Score=134.60  Aligned_cols=74  Identities=32%  Similarity=0.605  Sum_probs=62.0

Q ss_pred             CCCCCCCCCeec-C-C----CCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087          8 KGDISVTETKFL-V-F----PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus         8 ~~~~~i~~~~~C-~-~----~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      .+...+++.||| + .    .+.++|+|||||||++....+.+|+|+||+|||.. |.... |+|||+|+.|++||++++
T Consensus       206 ~~~~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~-C~~~~~p~vyt~V~~y~~WI~~~i  284 (289)
T 2bdy_A          206 STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVI  284 (289)
T ss_dssp             TCSSCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSS-SSCTTCCEEEEETGGGHHHHHHHH
T ss_pred             cccCcCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHH
Confidence            334568899999 7 2    26789999999999998632334999999999987 98766 999999999999999998


Q ss_pred             hh
Q psy17087         81 AY   82 (84)
Q Consensus        81 ~~   82 (84)
                      +.
T Consensus       285 ~~  286 (289)
T 2bdy_A          285 DQ  286 (289)
T ss_dssp             HC
T ss_pred             Hh
Confidence            75

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=99.89  E-value=1.8e-23  Score=135.34  Aligned_cols=68  Identities=41%  Similarity=0.836  Sum_probs=59.7

Q ss_pred             CCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         12 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        12 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      .+++.||| + ..+.++|+|||||||++...++ +|+|+||+|||.. |.... |+|||+|+.|++||+++++
T Consensus       207 ~~~~~~~Ca~~~~~~~~C~GDSGGPL~~~~~~~-~~~l~GIvS~g~~-C~~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          207 RVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQ-QFFLEGLVSFGAT-CGTEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             CCCTTEEEECCTTCTTCCCCCTTCEEEEEEGGG-EEEEEEEEEECCB-CSTTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             cCCCceEeeecCCCCeeCCCccCcceEEEcCCC-cEEEEEEEEECCC-CCCCCCCcEEeEHHHHHHHHHHhhC
Confidence            58899999 7 5578999999999999984424 4999999999987 99877 9999999999999999875

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=99.89  E-value=5.9e-23  Score=130.72  Aligned_cols=72  Identities=32%  Similarity=0.604  Sum_probs=62.4

Q ss_pred             CCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecC--CCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         10 DISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT--PECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        10 ~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~--~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...+++.||| + .++.++|+|||||||++...++. |+|+||+|||.  . |.... |+|||+|+.|++||+++++++
T Consensus       165 ~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~~g~-~~l~Gi~S~g~~~~-C~~~~~p~vyt~V~~~~~WI~~~i~~n  241 (241)
T 1bru_P          165 GSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQ-WQVHGIVSFGSSLG-CNYYHKPSVFTRVSNYIDWINSVIANN  241 (241)
T ss_dssp             GGGCCTTEEEECCSSSSBCCTTCTTCEEEEECTTSC-EEEEEEEEECBTTB-SSCTTCCEEEEEGGGSHHHHHHHHHHC
T ss_pred             CCcCCCceEeecCCCCCccCCCCCCCcEEEECCCCC-EEEEEEEEEcCCCC-CCCCCCCcEEEEHHHhHHHHHHHHhcC
Confidence            3468899999 7 66789999999999999864455 99999999997  5 98766 999999999999999999864

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=99.88  E-value=8.9e-23  Score=130.28  Aligned_cols=71  Identities=35%  Similarity=0.700  Sum_probs=62.1

Q ss_pred             CCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         10 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        10 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...+++.||| +  .++.++|+|||||||++... +. |+|+||+|||.. |.... |+|||||+.|++||+++++++
T Consensus       173 ~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~-~~-~~l~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~n  247 (247)
T 1ddj_A          173 NGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEK-DK-YILQGVTSWGLG-CARPNKPGVYVRVSRFVTWIEGVMRNN  247 (247)
T ss_dssp             TTCCCTTEEEESCSSSCCCBCCSCTTCEEEEECS-SS-EEEEEEECGGGC-CBBTTBCEEEEEGGGSHHHHHHHHHTC
T ss_pred             CCCCcCCeEeecCCCCCCccccCcCcCcEEEEEC-Cc-EEEEEEEEECCC-CCCCCCCEEEEEhHHhHHHHHHHhhcC
Confidence            4468899999 7  45689999999999999764 44 999999999988 98766 999999999999999999864

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=99.88  E-value=1.1e-22  Score=132.78  Aligned_cols=73  Identities=32%  Similarity=0.641  Sum_probs=62.0

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      +...+++.||| +  .++.++|+|||||||++....+.+|+|+||+|||.. |.... |+|||||+.|++||+++++.
T Consensus       174 ~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~  250 (290)
T 1fiw_A          174 YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVG-CARAKRPGVYTSTWSYLNWIASKIGS  250 (290)
T ss_dssp             TTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSS-SSBTTBCEEEEESGGGHHHHHHHHCH
T ss_pred             cCCcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECCC-CCCCCCCeEEEEHHHhHHHHHHHhCc
Confidence            34568899999 6  456799999999999998642334999999999988 98766 99999999999999999875

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=99.88  E-value=1.1e-22  Score=129.48  Aligned_cols=68  Identities=43%  Similarity=0.745  Sum_probs=60.8

Q ss_pred             CCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+++.||| +..+.++|+|||||||++..+ +. |+|+||+|||.. |.... |+|||||+.|++||++++++
T Consensus       174 ~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~-g~-~~l~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~  243 (245)
T 2f9n_A          174 IIRDDMLCAGNSQRDSCQGDSGGPLVCKVN-GT-WLQAGVVSWGEG-CAQPNRPGIYTRVTYYLDWIHHYVPK  243 (245)
T ss_dssp             CSCTTEEEECCSSSBCCTTCTTCEEEEEET-TE-EEEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHHHSCC
T ss_pred             ccccccEeecCCCCCcCCCCCCCceEEEEC-CE-EEEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHHHhhc
Confidence            47899999 866788999999999999864 54 999999999987 98766 99999999999999999875

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.88  E-value=2.5e-23  Score=125.09  Aligned_cols=68  Identities=43%  Similarity=0.774  Sum_probs=58.8

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeec-CCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~-~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  .++.++|+|||||||++.   +.   |+||+||+ .. |.... |+|||||+.|++||+++++.+
T Consensus        79 ~~~~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~---g~---l~Gi~S~g~~~-C~~~~~p~vyt~V~~y~~WI~~~~~~~  151 (152)
T 2pka_B           79 HPDKVTESMLCAGYLPGGKDTCMGDSGGPLICN---GM---WQGITSWGHTP-CGSANKPSIYTKLIFYLDWIDDTITEN  151 (152)
T ss_dssp             CSSBCCTTEEEEECTTSSCBCCTTCTTCEEEET---TE---EEEEECCCCSS-TTCTTCCEEEEEGGGGHHHHHHHHHHC
T ss_pred             hcCCCCCCEEeeccCCCCCcccCCccccceEEC---CE---EEEEEecCCCC-CCCCCCCeEEEEHHHHHHHHHHHhccC
Confidence            44568899999 6  457899999999999986   54   99999999 66 98766 999999999999999998764

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=99.88  E-value=8.2e-23  Score=129.32  Aligned_cols=72  Identities=35%  Similarity=0.748  Sum_probs=62.0

Q ss_pred             CCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          8 KGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         8 ~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+...+++.||| +  ..+.+.|+|||||||++..+ +. |+|+||+||+.. |.... |+|||||+.|++||+++++.
T Consensus       159 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~-~~-~~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~  234 (235)
T 2wph_S          159 STKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVE-GT-SFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             TCSSCCCTTEEEESCTTCSCBCCTTCTTCEEEEEET-TE-EEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHCCC
T ss_pred             cccCCCCCCEEEeCCCCCCCccCCCCCCCceEEeEC-Ce-EEEEEEEEECCC-CCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence            344568899999 7  45689999999999999764 44 999999999988 98766 99999999999999999864

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=99.88  E-value=6.3e-23  Score=129.89  Aligned_cols=73  Identities=36%  Similarity=0.637  Sum_probs=62.7

Q ss_pred             CCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087          7 HKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         7 ~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..+...+++.||| +  .++.++|+|||||||++...++. |+|+||+|||.. |.... |+|||+|+.|++||+++++
T Consensus       164 ~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~-~~l~Gi~S~g~~-c~~~~~p~vyt~v~~y~~WI~~~~~  240 (241)
T 3ncl_A          164 NLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGR-IFQAGVVSWGDG-CAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             HHSTTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSC-EEEEEEEEECSS-SSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             hhcccCCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCc-EEEEEEEEECCC-CCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            3345568899999 6  56789999999999998765455 999999999988 98766 9999999999999999874

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=99.88  E-value=6e-23  Score=131.27  Aligned_cols=72  Identities=36%  Similarity=0.691  Sum_probs=60.9

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  .++.++|+|||||||++..+ +. |+|+||+|||.. |.... |+|||+|+.|++||+++++..
T Consensus       166 ~~~~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~-g~-~~l~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~~  241 (250)
T 1aut_C          166 MSNMVSENMLCAGILGDRQDACEGDSGGPMVASFH-GT-WFLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWIHGHIRDK  241 (250)
T ss_dssp             CSSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEET-TE-EEEEEEEEECSS-SSCTTCCEEEECGGGTHHHHHHHHC--
T ss_pred             hccCCCCCEEEeCCCCCCCCCCCCCCchheEEEEC-Ce-EEEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHhhcc
Confidence            34467899999 7  45689999999999999764 54 999999999988 98766 999999999999999998753

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=99.88  E-value=2.8e-23  Score=132.58  Aligned_cols=70  Identities=39%  Similarity=0.713  Sum_probs=61.5

Q ss_pred             CCCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         11 ISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        11 ~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ..+++.||| +..+.++|+|||||||++..+ +. |+|+||+|||.. |.... |+|||+|+.|++||+++++.+
T Consensus       174 ~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~-~~-~~l~GI~S~g~~-c~~~~~p~vyt~V~~~~~WI~~~~~~n  245 (245)
T 1t8o_A          174 TKIKDAMICAGASGVSSCMGDSGGPLVCKKN-GA-WTLVGIVSWGSS-TCSTSTPGVYARVTALVNWVQQTLAAN  245 (245)
T ss_dssp             GGCCTTEEEEECSSCBCCTTCTTCEEEEEET-TE-EEEEEEEEECCT-TCCTTSEEEEEEGGGTHHHHHHHHHTC
T ss_pred             CcCCCceEEccCCCCccCcccCcCCEEEEEC-CE-EEEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHHccC
Confidence            457899999 866789999999999999864 54 999999999988 87655 999999999999999999764

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=99.88  E-value=1.4e-22  Score=128.85  Aligned_cols=76  Identities=28%  Similarity=0.575  Sum_probs=61.5

Q ss_pred             CCCCCCCCC--CCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHH
Q psy17087          4 PNDHKGDIS--VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWII   77 (84)
Q Consensus         4 ~~~~~~~~~--i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~   77 (84)
                      .|...+...  +++.||| +  ..+.++|+|||||||++... +. |+|+||+||+.. |.... |+|||+|+.|++||+
T Consensus       147 ~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~-~~-~~l~Gi~S~g~~-C~~~~~p~vyt~V~~y~~WI~  223 (240)
T 1si5_H          147 KCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQH-KM-RMVLGVIVPGRG-CAIPNRPGIFVRVAYYAKWIH  223 (240)
T ss_dssp             GTCC-------CCTTEEEEECSSSCCBCCTTCTTCEEEEECS-SS-EEEEEEECSCSC-SSCTTCCEEEEEGGGGHHHHH
T ss_pred             HhhhhhcCCccCCCCEEeecCCCCCCEeccCCCCCcEEEEEC-Cc-EEEEEEEEECCC-CCCCCCCcEEEEHHHHHHHHH
Confidence            455444433  7899999 6  34789999999999999864 55 999999999987 98766 999999999999999


Q ss_pred             HHhhh
Q psy17087         78 ARMAY   82 (84)
Q Consensus        78 ~~~~~   82 (84)
                      +++..
T Consensus       224 ~~i~~  228 (240)
T 1si5_H          224 KIILT  228 (240)
T ss_dssp             HHHSS
T ss_pred             HHHhc
Confidence            99875

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=99.88  E-value=6.6e-23  Score=130.02  Aligned_cols=72  Identities=25%  Similarity=0.521  Sum_probs=60.6

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  .++.++|+|||||||++... + +|+|+||+||+.. |.... |+|||+|+.|++||++++...
T Consensus       153 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~-~-~~~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~~  228 (234)
T 2asu_B          153 HRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTH-N-SWVLEGIIIPNRV-CARSRWPAVFTRVSVFVDWIHKVMRLG  228 (234)
T ss_dssp             TTTCCCTTEEEECCCSSCCBCCTTCTTCEEEEEET-T-EEEEEEEECCCSS-SSCTTCCEEEEEGGGSHHHHHHHC---
T ss_pred             cCCccCcceEeecCCCCCCeeccCCCCCceEEEEC-C-eEEEEEEEEcCCC-CCCCCCCeEEEEHHHHHHHHHHHhhcc
Confidence            34567899999 6  45789999999999999875 4 4999999999987 98766 999999999999999998753

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=99.88  E-value=1.9e-22  Score=127.94  Aligned_cols=71  Identities=41%  Similarity=0.738  Sum_probs=61.8

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      +...+++.||| +  ..+.++|+|||||||++..+ +. |+|+||+||+.. |.... |+|||+|+.|++||++++++
T Consensus       173 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~-~~-~~l~Gi~S~g~~-c~~~~~p~vyt~V~~~~~WI~~~~~e  247 (247)
T 3mhw_U          173 YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ-GR-MTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSHTKE  247 (247)
T ss_dssp             TGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEET-TE-EEEEEEEEECSS-SSBTTBCEEEEEGGGCHHHHHHHTTC
T ss_pred             cCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEEC-CC-EEEEEEEEECCC-CCCCCCCeEEEEHHHHHHHHHHHhcC
Confidence            34568899999 6  44789999999999999875 44 999999999987 98776 99999999999999999864

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=99.88  E-value=3.8e-22  Score=126.07  Aligned_cols=71  Identities=41%  Similarity=0.784  Sum_probs=61.2

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeec-CCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~-~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ..++++||| +  .++.+.|+|||||||++....+.+|+|+||+||+ .. |.... |+|||+|+.|++||++++++
T Consensus       166 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~-C~~~~~p~vyt~V~~y~~WI~~~i~~  241 (242)
T 3tvj_B          166 GSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMN-CGEAGQYGVYTKVINYIPWIENIISD  241 (242)
T ss_dssp             TCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEEESS-TTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             ccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeCCCC-CCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            358899999 7  4568999999999999986434569999999999 56 98776 99999999999999999864

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=99.87  E-value=1.9e-22  Score=128.24  Aligned_cols=72  Identities=29%  Similarity=0.552  Sum_probs=61.4

Q ss_pred             CCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC-CCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         10 DISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        10 ~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~-~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...+++.||| + .+..++|+|||||||++..+ +. |+|+||+||+.. .|.... |+|||||+.|++||+++++++
T Consensus       165 ~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~-g~-~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i~~n  240 (240)
T 1gvk_B          165 GSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVN-GQ-YAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN  240 (240)
T ss_dssp             GGGCCTTEEEECCSSSCBCCTTCTTCEEEEEET-TE-EEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHHC
T ss_pred             CccCCcceEeecCCCCCcccCCCCcCceEEEEC-Cc-EEEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHHHHHhcC
Confidence            3358899999 7 66789999999999999764 54 999999999952 398766 999999999999999999764

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=99.87  E-value=3.6e-22  Score=126.30  Aligned_cols=70  Identities=39%  Similarity=0.727  Sum_probs=60.4

Q ss_pred             CCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         10 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        10 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ...+++.||| +  .+..++|+|||||||++....+. |+|+||+||+.. |.... |+|||||+.|++||+++++
T Consensus       158 ~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~-~~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~  231 (232)
T 2oq5_A          158 NDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDI-WYLAGIVSWGDE-CAKPNKPGVYTRVTALRDWITSKTG  231 (232)
T ss_dssp             TTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSC-EEEEEEEEECSS-SSBTTBCEEEEETGGGHHHHHHHHC
T ss_pred             CCccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCC-EEEEEEEEeCCC-CCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            4467899999 6  44578999999999999765454 999999999987 98766 9999999999999999874

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=99.87  E-value=3.8e-22  Score=126.63  Aligned_cols=71  Identities=38%  Similarity=0.649  Sum_probs=61.0

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ..+++.||| +  .++.++|+|||||||++....+.+|+|+||+||+.. |.... |+|||+|+.|++||+++++.
T Consensus       175 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~  249 (251)
T 3gov_B          175 KKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDD-CGKKDRYGVYSYIHHNKDWIQRVTGV  249 (251)
T ss_dssp             CCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSS-SSCSSCCEEEEETTTTHHHHHHHHCC
T ss_pred             CCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCC-CCCCCCCEEEEEHHHhHHHHHHHhcc
Confidence            467899999 6  456899999999999998532334999999999987 98776 99999999999999999863

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=99.87  E-value=4.3e-22  Score=126.42  Aligned_cols=68  Identities=38%  Similarity=0.786  Sum_probs=60.0

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+++.||| +  .++.++|+|||||||++..+ +. |+|+||+||+.. |.... |+|||||+.|++||+++++.
T Consensus       166 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~-~~-~~l~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~  237 (238)
T 3bg8_A          166 KITHKMICAGYREGGKDACKGDSGGPLSCKHN-EV-WHLVGITSWGEG-CAQRERPGVYTNVVEYVDWILEKTQA  237 (238)
T ss_dssp             CCCTTEEEECCTTCCCBCCTTCTTCEEEEEET-TE-EEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             CCCCCeEeecCCCCCCCcCCCCCCcceEEEEC-Ce-EEEEEEEEECCC-CCCCCCCcEEEeHHHHHHHHHHHHhc
Confidence            47899999 7  45789999999999999864 54 999999999987 98766 99999999999999998864

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=99.87  E-value=2.2e-22  Score=128.28  Aligned_cols=75  Identities=32%  Similarity=0.599  Sum_probs=62.3

Q ss_pred             CCCCCCCCCCeec-C-C----CCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHH
Q psy17087          7 HKGDISVTETKFL-V-F----PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   79 (84)
Q Consensus         7 ~~~~~~i~~~~~C-~-~----~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~   79 (84)
                      ..+...+++.||| + .    ...++|+|||||||++....+.+|+|+||+||+.. |.... |+|||+|+.|++||+++
T Consensus       175 ~~~~~~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~  253 (259)
T 3rm2_H          175 DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKV  253 (259)
T ss_dssp             HTCSSCCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSS-SSCTTCCEEEEETGGGHHHHHHH
T ss_pred             hhhcccCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEECCC-CCCCCCCeEEEEHHHhHHHHHHH
Confidence            3345568899999 6 2    23589999999999998742334999999999987 98876 99999999999999999


Q ss_pred             hhh
Q psy17087         80 MAY   82 (84)
Q Consensus        80 ~~~   82 (84)
                      +++
T Consensus       254 i~~  256 (259)
T 3rm2_H          254 IDQ  256 (259)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=99.87  E-value=2.8e-22  Score=126.61  Aligned_cols=68  Identities=37%  Similarity=0.816  Sum_probs=59.7

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..+++.||| +  .++.++|+|||||||++..+ + +|+|+||+|||.. |.... |+|||+|+.|++||+++++
T Consensus       164 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~-~-~~~l~Gi~S~g~~-c~~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          164 YNITENMICAGYEEGGIDSCQGDSGGPLMCQEN-N-RWFLAGVTSFGYE-CALPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEET-T-EEEEEEEEEECSS-SSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ccCCCCeEeecCCCCCCccCCCCCCCeEEEEEC-C-cEEEEEEEEEcCC-CCCCCCCEEEeeHHHHHHHHHHHhC
Confidence            357899999 7  55778999999999999865 4 4999999999988 98776 9999999999999998764

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=99.87  E-value=1.5e-22  Score=128.69  Aligned_cols=72  Identities=36%  Similarity=0.679  Sum_probs=60.9

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  ..+.++|+|||||||++..+ +. |+|+||+||+.. |.... |+|||+|+.|++||+++++..
T Consensus       160 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~-~~-~~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~~  235 (241)
T 2jkh_A          160 SSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFK-DT-YFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWIDRSMKTR  235 (241)
T ss_dssp             CSSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEET-TE-EEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHTC--
T ss_pred             ccCcCCCCeEEeeCCCCCCccCcCcCCCeeEEEEC-CE-EEEEEEEEECCC-CCCCCCceEEEEhHHHHHHHHHHhccc
Confidence            34467899999 7  45678999999999999764 44 999999999988 98766 999999999999999998753

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=99.87  E-value=2.9e-22  Score=127.74  Aligned_cols=69  Identities=45%  Similarity=0.898  Sum_probs=58.8

Q ss_pred             CCCCCCCeec-C-C-CC------CCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHH
Q psy17087         10 DISVTETKFL-V-F-PG------KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   79 (84)
Q Consensus        10 ~~~i~~~~~C-~-~-~~------~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~   79 (84)
                      ...++++||| + . .+      .++|+|||||||++..+ +. |+|+||+||+.. |.... |+|||||+.|++||+++
T Consensus       173 ~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~~-~~-~~l~Gi~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~  249 (252)
T 1rtf_B          173 NRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLND-GR-MTLVGIISWGLG-CGQKDVPGVYTKVTNYLDWIRDN  249 (252)
T ss_dssp             TCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEET-TE-EEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHH
T ss_pred             CCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEeC-Cc-EEEEEEEEEcCC-CCCCCCCeEEEEHHHHHHHHHHh
Confidence            3467899999 6 2 23      78999999999999864 44 999999999998 98766 99999999999999998


Q ss_pred             hh
Q psy17087         80 MA   81 (84)
Q Consensus        80 ~~   81 (84)
                      ++
T Consensus       250 ~~  251 (252)
T 1rtf_B          250 MR  251 (252)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=99.87  E-value=5.3e-22  Score=126.03  Aligned_cols=72  Identities=32%  Similarity=0.586  Sum_probs=61.3

Q ss_pred             CCCCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecC--CCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         10 DISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT--PECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        10 ~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~--~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...+++.||| +..+.+.|+|||||||++...++. |+|+||+||+.  . |.... |+|||+|+.|++||+++++++
T Consensus       165 ~~~~~~~~~Ca~~~~~~~C~GDsGgPL~~~~~~~~-~~l~Gi~S~g~~~~-C~~~~~p~vyt~V~~~~~WI~~~~~~~  240 (240)
T 1fon_A          165 GITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGS-WQVHGVTSFVSAFG-CNTIKKPTVFTRVSAFIDWIDETIASN  240 (240)
T ss_dssp             GGGCCTTEEEECCSSSCSTTSCTTCEEEEECSSSC-EEEEEEEEECCTTC-SSBTTBCEEEEEGGGSHHHHHHHHHHC
T ss_pred             CCccccceEeecCCCCcccCCCCCCeEEeEcCCCC-EEEEEEEEEcCCCC-CCCCCCCcEEEEhHHHHHHHHHHHhcC
Confidence            3457899999 744489999999999999864355 99999999986  5 98766 999999999999999999764

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=99.87  E-value=6.7e-22  Score=125.96  Aligned_cols=71  Identities=37%  Similarity=0.740  Sum_probs=60.6

Q ss_pred             CCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         10 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        10 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...+++.||| +  ..+.+.|+|||||||++..+ +. |+|+||+||+.. |.... |+|||+|+.|++||+++++..
T Consensus       167 ~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~-g~-~~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~~  241 (248)
T 2r0l_A          167 GADISPNMLCAGYFDCKSDACQGDSGGPLACEKN-GV-AYLYGIISWGDG-CGRLHKPGVYTRVANYVDWINDRIRPP  241 (248)
T ss_dssp             GGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEET-TE-EEEEEEEEECST-TTCTTCCEEEEEGGGGHHHHHHHHC--
T ss_pred             CCcCCCCEEeECCCCCCCcCCCCccCCeEEEEEC-Cc-EEEEEEEEeCCC-CCCCCCCcEEEEHHHHHHHHHHHhcCC
Confidence            4457899999 7  45689999999999999864 54 999999999987 98766 999999999999999998753

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=99.87  E-value=2.8e-22  Score=136.79  Aligned_cols=75  Identities=32%  Similarity=0.599  Sum_probs=62.6

Q ss_pred             CCCCCCCCCCeec-C-C----CCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHH
Q psy17087          7 HKGDISVTETKFL-V-F----PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   79 (84)
Q Consensus         7 ~~~~~~i~~~~~C-~-~----~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~   79 (84)
                      ..+...++++||| + .    ...++|+|||||||++....+.+|+|+||+|||.. |.... |+|||+|+.|++||+++
T Consensus       340 ~~~~~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~G~~-C~~~~~pgVyT~Vs~y~~WI~~~  418 (424)
T 3nxp_A          340 DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKV  418 (424)
T ss_dssp             HTCSSCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECCSSC-TTTCCSCEEEEECTTCHHHHHHH
T ss_pred             hhccCcCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHH
Confidence            3445578999999 7 2    24589999999999998632334999999999988 99877 99999999999999999


Q ss_pred             hhh
Q psy17087         80 MAY   82 (84)
Q Consensus        80 ~~~   82 (84)
                      |+.
T Consensus       419 i~~  421 (424)
T 3nxp_A          419 IDQ  421 (424)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=99.87  E-value=1e-21  Score=125.66  Aligned_cols=70  Identities=34%  Similarity=0.649  Sum_probs=60.0

Q ss_pred             CCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecC-CCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         10 DISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        10 ~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~-~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ...+++.||| + .+..++|+|||||||++..+ +. |+|+||+|||. ..|.... |+|||||+.|++||+++++
T Consensus       177 ~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~-~~-~~l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~~  250 (251)
T 1pyt_D          177 GTTVKETMVCAGGDGVISACNGDSGGPLNCQAD-GQ-WDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             TTTCCTTEEEECCSCSSCCCCSCTTCEEEEESS-SS-EEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             CCCcCCCeEEecCCCCCccCCCCCCCceEEEEC-CC-EEEEEEEEECCCCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence            3468899999 7 66679999999999999864 55 99999999996 2398766 9999999999999999875

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=99.87  E-value=3.6e-22  Score=125.49  Aligned_cols=69  Identities=29%  Similarity=0.553  Sum_probs=60.3

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+++.||| +  ..+.+.|+|||||||++....+. |+|+||+||+.. |.... |++||+|+.|++||+++++.
T Consensus       151 ~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~-~~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~  223 (224)
T 3beu_A          151 LVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADE-WVQVGIVSWGEG-CARKGKYGVYTEVSTFASAIASAART  223 (224)
T ss_dssp             CCGGGEEEECCSSSSCBCCTTCTTCEEEEECTTSC-EEEEEEEEEESS-SSCTTCCEEEEEHHHHHHHHHHHHTT
T ss_pred             cCCCCeEEeccCCCCCcCCCCcCCCeeEEecCCCC-EEEEEEeccCCC-CCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            57889999 7  45679999999999999865344 999999999988 98766 99999999999999999874

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=99.87  E-value=8.6e-22  Score=124.95  Aligned_cols=71  Identities=31%  Similarity=0.594  Sum_probs=59.8

Q ss_pred             CCCCCCeec-C-C-CCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         11 ISVTETKFL-V-F-PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        11 ~~i~~~~~C-~-~-~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ..++++||| + . .+.++|+|||||||++......+|+|+||+|||.. |.. .|+|||+|+.|++||+++++++
T Consensus       168 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~-C~~-~~~vyt~V~~y~~WI~~~~~~~  241 (242)
T 2qy0_B          168 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CSR-GYGFYTKVLNYVDWIKKEMEEE  241 (242)
T ss_dssp             CCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSS-SSS-SCEEEEEGGGGHHHHHHHTTC-
T ss_pred             ccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCC-cCC-CCcEEEEHHHHHHHHHHHhhcc
Confidence            357899999 7 3 57899999999999996432345999999999987 985 4899999999999999999864

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=99.87  E-value=1.1e-21  Score=124.56  Aligned_cols=69  Identities=39%  Similarity=0.814  Sum_probs=60.6

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .+++.||| +  ..+.++|+|||||||++..+ +. |+|+||+||+.. |.... |+|||+|+.|++||+++++..
T Consensus       166 ~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~-~~-~~l~GI~S~g~~-c~~~~~p~vyt~V~~~~~WI~~~~~~~  238 (241)
T 2any_A          166 KITQRMVCAGYKEGGKDACKGDSGGPLVCKHN-GM-WRLVGITSWGEG-CARREQPGVYTKVAEYMDWILEKTQSS  238 (241)
T ss_dssp             CSCTTEEEECCTTCCCBCCTTCTTCEEEEEET-TE-EEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHSCC
T ss_pred             CCCcCcEeecCCCCCCccCCCCCCCcEEEEEC-CE-EEEEEEEEecCC-CCCCCCCeEEEEHHHhHHHHHHHhhcc
Confidence            47899999 7  45788999999999999864 54 999999999987 98766 999999999999999998753

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=99.87  E-value=6.3e-22  Score=128.52  Aligned_cols=72  Identities=36%  Similarity=0.711  Sum_probs=61.0

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  ..+.+.|+|||||||++..+ +. |+|+||+|||.. |.... |+|||+|+.|++||+++++.+
T Consensus       201 ~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~~-g~-~~l~GIvS~g~~-C~~~~~p~vyt~V~~y~~WI~~~i~~~  276 (283)
T 1yc0_A          201 YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKN-GV-AYLYGIISWGDG-CGRLHKPGVYTRVANYVDWINDRIRPP  276 (283)
T ss_dssp             TGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEET-TE-EEEEEEEEECST-TTCTTCCEEEEEGGGGHHHHHHHCC--
T ss_pred             cCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEEC-Cc-EEEEEEEEECCC-CCCCCCCeEEEEhhhHHHHHHHHhcCC
Confidence            34457899999 7  45688999999999999864 54 999999999998 98766 999999999999999998753

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=99.86  E-value=8.5e-22  Score=125.90  Aligned_cols=69  Identities=41%  Similarity=0.757  Sum_probs=61.3

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ..+++.||| +  ..+.+.|+|||||||++..+ +. |+|+||+||+.. |.... |+|||+|+.|++||+++++.
T Consensus       171 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~-~~-~~lvGI~S~g~~-c~~~~~p~vyt~v~~~~~WI~~~i~~  243 (261)
T 3gyl_B          171 HFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVE-GL-WYLTGIVSWGDA-CGARNRPGVYTLASSYASWIQSKVTE  243 (261)
T ss_dssp             CCCCTTEEEESCSSSSCBCCTTTTTCEEEEEET-TE-EEEEEEECCCCC-SSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             ccccCCeEeeCCCCCCCccCCCCCCCeeEEEeC-CE-EEEEEEEecCCC-CCCCCCCCEEEEHHHhHHHHHHHHhh
Confidence            468899999 7  56789999999999999865 54 999999999987 98776 99999999999999999874

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=99.86  E-value=1.1e-21  Score=132.00  Aligned_cols=74  Identities=34%  Similarity=0.718  Sum_probs=62.7

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeC--CCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNN--DTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~--~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      +...+++.||| +  .++.++|+|||||||++...  ...+|+|+||+|||.. |.... |+|||||+.|++||+++++.
T Consensus       283 ~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~-C~~~~~p~vyt~V~~y~~WI~~~i~~  361 (372)
T 1z8g_A          283 YGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTG-CALAQKPGVYTKVSDFREWIFQAIKT  361 (372)
T ss_dssp             TTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSS-SSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             cCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            44568999999 7  45689999999999999863  1245999999999998 98766 99999999999999999875


Q ss_pred             c
Q psy17087         83 E   83 (84)
Q Consensus        83 ~   83 (84)
                      .
T Consensus       362 ~  362 (372)
T 1z8g_A          362 H  362 (372)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=99.86  E-value=4.5e-22  Score=125.98  Aligned_cols=70  Identities=34%  Similarity=0.689  Sum_probs=60.1

Q ss_pred             CCCCCeec-C--CCC--CCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         12 SVTETKFL-V--FPG--KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        12 ~i~~~~~C-~--~~~--~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .+++.||| +  .+.  .++|+|||||||++...++. |+|+||+||+.. |....|+|||+|+.|++||++++++|
T Consensus       164 ~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~-~~l~Gi~S~g~~-C~~~~p~vyt~v~~~~~WI~~~i~~n  238 (238)
T 1ym0_A          164 TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGI-FSLVGIVSWGIG-CASGYPGVYSRVGFHAGWITDTITNN  238 (238)
T ss_dssp             CCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCC-EEEEEEEEECSS-SSSSSCEEEEEHHHHHHHHHHHHHCC
T ss_pred             ccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCC-EEEEEEEeECCC-CCCCCCcEEEEHHHhHHHHHHHhcCC
Confidence            57899999 6  333  78999999999999874355 999999999987 98333999999999999999999865

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=99.86  E-value=9.8e-22  Score=125.67  Aligned_cols=69  Identities=41%  Similarity=0.721  Sum_probs=60.6

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .+++.||| +  .++.++|+|||||||++..+ +. |+|+||+|||.. |.... |+|||+|+.|++||+++++..
T Consensus       170 ~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~-g~-~~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~~  242 (254)
T 2bz6_H          170 NITEYMFCAGYSDGSKDSCKGDSGGPHATHYR-GT-WYLTGIVSWGQG-CATVGHFGVYTRVSQYIEWLQKLMRSE  242 (254)
T ss_dssp             CCCTTEEEESCSSSSCBCCGGGTTCEEEEEET-TE-EEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHTSC
T ss_pred             ccCCCEEeecCCCCCCccccccCCCceEEeEC-CE-EEEEEEEEECCC-CCCCCCCeEEEEHHHHHHHHHHHHhcc
Confidence            67899999 7  44678999999999999764 54 999999999988 98766 999999999999999998753

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=99.86  E-value=9e-22  Score=124.88  Aligned_cols=67  Identities=39%  Similarity=0.724  Sum_probs=58.5

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      ..+++.||| +  ..+.++|+|||||||++... +. |+|+||+||+.. |..+. |+|||||+.|++||++++
T Consensus       166 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~-~~-~~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          166 DEILDSMICAGVPEGGKDSCQGDSGGPLAASDT-GS-TYLAGIVSWGYG-CARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             TTSCTTEEEECCTTCCCBCCTTCTTCEEEECTT-SS-CEEEEEEEEESS-SSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             CCcCCCeEEEecCCCCCCCCCCcCCCCeEEecC-CC-EEEEEEEEecCC-CCCCCCCcEEEEHHHhHHHHHHhc
Confidence            357899999 7  45789999999999999753 45 999999999988 98766 999999999999999876

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=99.86  E-value=1.8e-21  Score=129.11  Aligned_cols=70  Identities=30%  Similarity=0.586  Sum_probs=59.7

Q ss_pred             CCCCCCeec-C-C-CCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         11 ISVTETKFL-V-F-PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        11 ~~i~~~~~C-~-~-~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ..++++||| + . .+.++|+|||||||++......+|+|+||+|||.. |.. .|+|||||+.|++||+++|++
T Consensus       257 ~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~~l~GIvS~G~~-C~~-~~gvyT~V~~y~~WI~~~i~~  329 (329)
T 1md8_A          257 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CSR-GYGFYTKVLNYVDWIKKEMEE  329 (329)
T ss_dssp             CCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEEEEEEEEEECSS-SSS-SCEEEEEGGGTHHHHHHHHHC
T ss_pred             ccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcEEEEEEEEECCC-cCC-CCcEEEEHHHHHHHHHHHHhC
Confidence            357899999 7 3 57899999999999996433445999999999998 985 499999999999999999863

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=99.86  E-value=2.6e-21  Score=130.74  Aligned_cols=70  Identities=41%  Similarity=0.816  Sum_probs=59.1

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeec-CCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~-~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .++++||| +  .++.++|+|||||||++....+.+|+|+||+||| .. |.... |+|||||+.|++||+++|++
T Consensus       328 ~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g~~~-C~~~~~p~vyt~V~~y~~WI~~~i~~  402 (403)
T 1zjk_A          328 SVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMN-CGEAGQYGVYTKVINYIPWIENIISD  402 (403)
T ss_dssp             CSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEECSC-C--CCCCEEEEEGGGGHHHHHHHHTT
T ss_pred             cCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEECCCC-CCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            68999999 7  4578999999999999976334459999999999 66 98766 99999999999999999864

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=99.86  E-value=1.5e-21  Score=129.38  Aligned_cols=69  Identities=39%  Similarity=0.755  Sum_probs=59.7

Q ss_pred             CCCCCeec-C-CCCCCCccCCCCcccEEEeCC-CCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         12 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNND-TRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        12 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~-~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .++++||| + ..+.++|+|||||||++.... +.+|+|+||+|||.. |..  |+|||+|+.|++||+++++.+
T Consensus       256 ~~~~~~~Cag~~~~~~~C~GDSGGPL~~~~~~~~~~~~l~GIvS~g~~-C~~--~~vyt~V~~y~~WI~~~~~~~  327 (333)
T 1elv_A          256 VFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQ-CGT--YGLYTRVKNYVDWIMKTMQEN  327 (333)
T ss_dssp             CCCTTEEEEECSTTCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSS-TTS--EEEEEEGGGGHHHHHHHHHHT
T ss_pred             cCCCCeECccCCCCCCcCcCcCCCceEEEECCCCcEEEEEEEEeeCCC-CCC--CcEEeEHHHHHHHHHHHHhcc
Confidence            58899999 6 557899999999999997532 325999999999988 985  899999999999999998754

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=99.85  E-value=7.2e-22  Score=133.98  Aligned_cols=70  Identities=30%  Similarity=0.660  Sum_probs=60.6

Q ss_pred             CCCCCeec-C-CCCCCCccCCCCcccEEEeC-CCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNN-DTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~-~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+++.||| + ..+.++|+|||||||++... ...+|+|+||+|||.. |.... |+|||||+.|++||+++++.
T Consensus       311 ~i~~~~iCAg~~~g~d~C~GDSGGPLv~~~~~~~~~~~lvGIvS~G~~-C~~~~~PgVYT~V~~y~~WI~~~i~~  384 (394)
T 2b9l_A          311 VLDQTFVCAGGEQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIG-CGDENVPGVYANVAHFRNWIDQEMQA  384 (394)
T ss_dssp             CCCTTEEEECCBSSCSCCSSCTTCEEEEEETTEEEEEEEEEEESCTTC-CCBSSSCEEEEEGGGGHHHHHHHHHH
T ss_pred             ecCCCEEEeeCCCCCcCCCCCcchhhEEEEcCCCCeEEEEEEEEECCC-CCCCCCCeEEEEHHHhHHHHHHHHHh
Confidence            57899999 7 66789999999999999742 1235999999999998 98766 99999999999999999875

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=99.85  E-value=1.2e-21  Score=123.81  Aligned_cols=67  Identities=34%  Similarity=0.665  Sum_probs=58.8

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ..+++.||| +  .++.++|+|||||||++.   +.   |+||+|||...|.... |+|||+|+.|++||+++++.+
T Consensus       161 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~  231 (238)
T 4e7n_A          161 LPATSRTLCAGILEGGKDTCKGDSGGPLICN---GQ---FQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGN  231 (238)
T ss_dssp             CCSCCSEEEEECTTCSCBCCTTCTTCEEEET---TE---EEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTTC
T ss_pred             CCCCCCeEEeCCCCCCCccCCCCCCcceEEC---CE---EEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhcC
Confidence            467899999 6  667899999999999985   44   9999999976688766 999999999999999999864

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=99.85  E-value=1.2e-21  Score=124.81  Aligned_cols=71  Identities=27%  Similarity=0.454  Sum_probs=59.6

Q ss_pred             CCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          8 KGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         8 ~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+...+++.||| +  ..+.++|+|||||||++.   +. |+|+||+||+...|.... |+|||+|+.|++||++++..
T Consensus       156 ~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~-~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~  230 (240)
T 2zgc_A          156 FWNGSLSPSMVCLAADSKDQAPCKGDSGGPLVCG---KG-RVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGR  230 (240)
T ss_dssp             TTTTCCCTTEEEEECSSTTCBCCTTCTTCEEEET---TT-TEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHCC
T ss_pred             ccCCCCCCceEeeccCCCCCccCCCCccCeeEEC---CC-CEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHhh
Confidence            344568899999 6  346789999999999995   44 789999999943398766 99999999999999999874

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=99.85  E-value=1.7e-21  Score=122.98  Aligned_cols=74  Identities=30%  Similarity=0.579  Sum_probs=62.2

Q ss_pred             CCCCCCC-CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHH
Q psy17087          4 PNDHKGD-ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   78 (84)
Q Consensus         4 ~~~~~~~-~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~   78 (84)
                      .|...+. ..+++.||| +  .++.++|+|||||||++.   +.   |+||+||+...|.... |+|||+|+.|++||++
T Consensus       149 ~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~---~~---l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~  222 (234)
T 3s9c_A          149 WCEPLYPWVPADSRTLCAGILKGGRDTCHGDSGGPLICN---GE---MHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQS  222 (234)
T ss_dssp             GTTTTCTTSCTTSSEEEEECTTSSCBCCTTCTTCEEEET---TE---EEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             HhhhcccCCCCCcceEEeecCCCCCccCCCCCCCeEEEe---CC---cEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHH
Confidence            3444444 568899999 6  567899999999999985   44   9999999976598876 9999999999999999


Q ss_pred             Hhhhc
Q psy17087         79 RMAYE   83 (84)
Q Consensus        79 ~~~~~   83 (84)
                      +++.+
T Consensus       223 ~i~~~  227 (234)
T 3s9c_A          223 IIAGN  227 (234)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            99864

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=99.85  E-value=6.6e-22  Score=125.00  Aligned_cols=68  Identities=41%  Similarity=0.763  Sum_probs=59.1

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  ..+.++|+|||||||++.   +.   |+||+|||.. |.... |+|||||+.|++||+++++.+
T Consensus       156 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~~  227 (228)
T 1fxy_A          156 YPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCN---GQ---LQGVVSWGDG-CAQKNKPGVYTKVYNYVKWIKNTIAAN  227 (228)
T ss_dssp             STTTCCTTEEEESCTTCSCBCCTTCTTCEEEET---TE---EEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHHHHHHT
T ss_pred             cCCCCCCCEEEeccCCCCCccccCccccceEEC---CE---EEEEEEECCC-CCCCCCCEEEEEhHHHHHHHHHHHhcc
Confidence            44567899999 7  457899999999999985   44   9999999987 98766 999999999999999999864

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.85  E-value=7.2e-22  Score=124.58  Aligned_cols=68  Identities=41%  Similarity=0.791  Sum_probs=58.9

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  ..+.++|+|||||||++.   +.   |+||+||+.. |.... |+|||+|+.|++||+++++++
T Consensus       152 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~i~~n  223 (223)
T 3mfj_A          152 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCS---GK---LQGIVSWGSG-CAQKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             STTTCCTTEEEESCTTSSCBCCTTCTTCEEEET---TE---EEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHHHHHHC
T ss_pred             hcCcCCCCEEEccCCCCCCCcCCCCcccceEEC---CE---EEEEEEECCC-CCCCCCCeEEEEHHHhHHHHHHHHhcC
Confidence            34567899999 7  467899999999999984   54   9999999987 98766 999999999999999998764

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=99.85  E-value=3e-21  Score=122.28  Aligned_cols=69  Identities=33%  Similarity=0.646  Sum_probs=58.2

Q ss_pred             CCCCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecC-CCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087         10 DISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus        10 ~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~-~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      ...+++.||| +..+.+.|+|||||||++..+ +. |+|+||+||+. ..|.... |+|||||+.|++||+++|
T Consensus       165 ~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~-g~-~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i  236 (236)
T 1elt_A          165 GSTVKTTMVCAGGGANSGCNGDSGGPLNCQVN-GS-YYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             GGGSCTTEEEECCSSCBCCTTCTTCEEEEEET-TE-EEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             CCcCCcceEEecCCCCccCCCCCCCeeEEEEC-CE-EEEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHhhC
Confidence            3357899999 744588999999999999864 54 99999999985 2398766 999999999999999875

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=99.85  E-value=8.1e-22  Score=124.51  Aligned_cols=68  Identities=40%  Similarity=0.781  Sum_probs=58.8

Q ss_pred             CCCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeec-CCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~-~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| + ..+.++|+|||||||++.   +.   |+||+||| .. |.... |+|||+|+.|++||+++++.+
T Consensus       155 ~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~~-C~~~~~p~vyt~V~~~~~WI~~~~~~~  226 (227)
T 2psx_A          155 YPRQIDDTMFCAGDKAGRDSCQGDSGGPVVCN---GS---LQGLVSWGDYP-CARPNRPGVYTNLCKFTKWIQETIQAN  226 (227)
T ss_dssp             STTTCCTTEEEECCSTTCBCCTTCTTCEEEET---TE---EEEEEEECCSS-TTCTTCCEEEEEGGGCHHHHHHHHHHT
T ss_pred             cCCCCCCCEEcccCCCCCccCCCCCCcceeeC---CE---EEEEEeecCCC-CCCCCCCcEEEEHHHhHHHHHHHHhcC
Confidence            44467899999 7 567899999999999985   44   99999999 45 98766 999999999999999999864

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=99.85  E-value=7.3e-22  Score=125.07  Aligned_cols=74  Identities=32%  Similarity=0.549  Sum_probs=61.5

Q ss_pred             CCCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHH
Q psy17087          4 PNDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   79 (84)
Q Consensus         4 ~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~   79 (84)
                      .|...+...+++.||| +  ..+.++|+|||||||++.   +.   |+||+|||...|.... |+|||+|+.|++||+++
T Consensus       157 ~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~  230 (235)
T 1ton_A          157 KCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICD---GV---LQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKV  230 (235)
T ss_dssp             GCGGGGSTTGGGGEEEEECTTCSCBCCTTCTTCEEEET---TE---EEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHH
T ss_pred             HHHHHhcCcCCCCeEeeccCCCCCcCCCCCCccccEEC---CE---EEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence            4555555568899999 6  457899999999999984   44   9999999943398766 99999999999999999


Q ss_pred             hhhc
Q psy17087         80 MAYE   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      ++++
T Consensus       231 ~~~~  234 (235)
T 1ton_A          231 MKEN  234 (235)
T ss_dssp             HHHC
T ss_pred             HccC
Confidence            9864

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.85  E-value=1e-21  Score=123.31  Aligned_cols=69  Identities=41%  Similarity=0.778  Sum_probs=60.0

Q ss_pred             CCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          8 KGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         8 ~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .+...+++.||| +  ..+.+.|+|||||||++.   +.   |+||+||+.. |.... |++||+|+.|++||+++++++
T Consensus       151 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~---~~---l~Gi~S~g~~-c~~~~~p~vyt~v~~~~~WI~~~i~~~  223 (223)
T 4i8h_A          151 AYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCS---GK---LQGIVSWGSG-CAQKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             HSTTTCCTTEEEESCTTSSCBCCTTCTTCEEEET---TE---EEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             hhCCCCCCCeEeccCCCCCCccCCCCCCCcEEEC---CE---EEEEEEcCCC-CCCCCCCeEEEEHHHHHHHHHHHHhcC
Confidence            344568899999 7  567899999999999985   44   9999999998 98766 999999999999999999864

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=99.84  E-value=9.7e-22  Score=124.57  Aligned_cols=69  Identities=36%  Similarity=0.641  Sum_probs=58.5

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  ..+.++|+|||||||++.   +   +|+||+|||...|.... |+|||||+.|++||+++++++
T Consensus       165 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~---~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  237 (238)
T 1spj_A          165 HVQKVTDFMLCVGHLEGGKDTCVGDSGGPLMCD---G---VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIAEN  237 (238)
T ss_dssp             CSSCCCTTEEEEECTTCSSBCCTTCTTCEEEET---T---EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHHT
T ss_pred             ccCCCCCCeEEeeCCCCCCCCCCCCCCCcEEEc---C---EEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHhhcC
Confidence            44457899999 6  457899999999999985   3   49999999943398766 999999999999999999864

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=99.84  E-value=5.6e-22  Score=125.73  Aligned_cols=75  Identities=23%  Similarity=0.346  Sum_probs=62.5

Q ss_pred             CCCCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHH
Q psy17087          3 HPNDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   78 (84)
Q Consensus         3 ~~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~   78 (84)
                      ..|...+...+++.||| +  ..+.++|+|||||||++.   +.   |+||+|||...|.... |+|||||+.|++||++
T Consensus       158 ~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~  231 (237)
T 1gvz_A          158 EKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALICD---GV---FQGITSWGYSECADFNDNFVFTKVMPHKKWIKE  231 (237)
T ss_dssp             GGGCSSCGGGCCTTEEEEECSSTTCEECGGGTTCEEEET---TE---EEEEECCCSSSCEETTTSCCEEESGGGHHHHHH
T ss_pred             hHhhhhhhhcCCCceEEEeeCCCCCccCCCCccCcEeeC---CE---EEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHH
Confidence            45666666678999999 6  456789999999999984   54   9999999982398665 9999999999999999


Q ss_pred             Hhhhc
Q psy17087         79 RMAYE   83 (84)
Q Consensus        79 ~~~~~   83 (84)
                      +++++
T Consensus       232 ~~~~~  236 (237)
T 1gvz_A          232 TIEKN  236 (237)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            99864

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=99.84  E-value=1.5e-21  Score=131.57  Aligned_cols=70  Identities=31%  Similarity=0.626  Sum_probs=58.0

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .++++||| +  .++.++|+|||||||++......+|+|+||+|||.. |.. .|+|||||+.|++||+++|+++
T Consensus       326 ~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~~l~GivS~g~~-C~~-~~~vyt~V~~y~~WI~~~~~~~  398 (399)
T 1gpz_A          326 VFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CSR-GYGFYTKVLNYVDWIKKEMEEE  398 (399)
T ss_dssp             --CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEEEEEEEECCCTT-TTT-TEEEEEEGGGGHHHHHHHTC--
T ss_pred             cCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeEEEEEEEEeCCC-cCC-CCeEEEEhHHhHHHHHHHhccC
Confidence            57899999 6  346899999999999987643446999999999998 985 3999999999999999999764

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=99.84  E-value=1.5e-21  Score=123.05  Aligned_cols=67  Identities=39%  Similarity=0.718  Sum_probs=58.2

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      +...+++.||| +  ..+.++|+|||||||++.   +.   |+||+|||.. |.... |+|||||+.|++||+++++.
T Consensus       151 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~-C~~~~~p~vyt~v~~~~~WI~~~~~~  221 (222)
T 1hj8_A          151 YPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCN---GE---LQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             STTCCCTTEEEESCTTSSCBCCTTCTTCEEEET---TE---EEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             ccCCCCCCeEEeccCCCCCccCCCCcccceEEC---CE---EEEEEeecCC-CCCCCcCcEEEEhHHhHHHHHHHhhc
Confidence            34467899999 6  567899999999999984   54   9999999987 98766 99999999999999999864

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=99.84  E-value=1.5e-21  Score=123.71  Aligned_cols=69  Identities=35%  Similarity=0.686  Sum_probs=58.8

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  .++.++|+|||||||++.   +.   |+||+|||...|.... |+|||+|+.|++||++++..+
T Consensus       164 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~  236 (237)
T 2zch_P          164 HPQKVTKFMLCAGRWTGGKSTCSGDSGGPLVCN---GV---LQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIVAN  236 (237)
T ss_dssp             CSSBCCTTEEEEECTTCSCBCCTTCTTCEEESS---SS---EEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             ccCCCCceEEeecCCCCCCcccCCCccCeEEEC---CE---EEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHHhcC
Confidence            34567899999 6  456899999999999985   44   9999999983398766 999999999999999998764

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=99.84  E-value=9.1e-22  Score=125.05  Aligned_cols=73  Identities=33%  Similarity=0.653  Sum_probs=60.5

Q ss_pred             CCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087          5 NDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus         5 ~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      |...+...+++.||| +  .++.+.|+|||||||++.   +.   |+||+|||...|.... |+|||+|+.|++||++++
T Consensus       163 C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (240)
T 1sgf_A          163 CDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICD---GI---LQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM  236 (240)
T ss_dssp             HHTTCSSBCCTTEEEEEECSSSEEECCCCTTCEEEET---TE---EEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHH
T ss_pred             hhhhhCCCcCCCeEeEccCCCCCCCCCCCCcCcEEEc---cE---EEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHH
Confidence            444455568899999 6  456789999999999984   54   9999999943498766 999999999999999999


Q ss_pred             hhc
Q psy17087         81 AYE   83 (84)
Q Consensus        81 ~~~   83 (84)
                      +.+
T Consensus       237 ~~~  239 (240)
T 1sgf_A          237 ANN  239 (240)
T ss_dssp             HSC
T ss_pred             hcC
Confidence            864

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=99.84  E-value=1.7e-21  Score=122.81  Aligned_cols=69  Identities=42%  Similarity=0.742  Sum_probs=58.1

Q ss_pred             CCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          8 KGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         8 ~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+...+++.||| +  ..+.++|+|||||||++.   +   +|+||+|||...|.... |+|||||+.|++||+++++.
T Consensus       151 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~---~---~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~a  223 (223)
T 2bdg_A          151 LYDPLYHPSMFCAGGGQDQKDSCNGDSGGPLICN---G---YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQA  223 (223)
T ss_dssp             HSTTTCCTTEEEECCSTTCCBCCTTCTTCEEEET---T---EEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHHHC
T ss_pred             hhCCCCCCCeEeccCCCCCCCcCCCCCCchheEc---c---EEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHhcC
Confidence            344567899999 6  467899999999999985   4   49999999973498766 99999999999999998863

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=99.84  E-value=2.1e-21  Score=123.12  Aligned_cols=68  Identities=40%  Similarity=0.676  Sum_probs=58.6

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeec-CCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~-~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...+++.||| +  ..+.++|+|||||||++.   +.   |+||+||| .. |.... |+|||||+.|++||+++++++
T Consensus       164 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~~-C~~~~~p~vyt~V~~~~~WI~~~~~~n  236 (237)
T 1ao5_A          164 YLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICD---GI---LQGTTSYGPVP-CGKPGVPAIYTNLIKFNSWIKDTMMKN  236 (237)
T ss_dssp             CSSCCCTTEEEEECTTCSCBCCTTCTTCEEEET---TE---EEEEEEECCSS-TTCTTCCEEEECGGGGHHHHHHHHHHC
T ss_pred             hcccCCCCEEEEccCCCCCCCCCCCCcceEEEC---CE---EeEEEeEcCCC-CCCCCCCcEEEEHHHHHHHHHHHHhhc
Confidence            44567899999 7  356799999999999984   54   99999999 55 98766 999999999999999999865

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=99.83  E-value=1.1e-20  Score=119.06  Aligned_cols=67  Identities=39%  Similarity=0.780  Sum_probs=58.5

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ..+.+.||| +  .++.++|+|||||||++.   +.   |+||+|||...|.... |+|||+|+.|++||+++++.+
T Consensus       157 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~  227 (234)
T 3s69_A          157 LLTEYRTLCAGILEGGKDTCGGDSGGPLICN---GQ---FQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGN  227 (234)
T ss_dssp             CCTTSCEEEEECTTCSCBCCTTCTTCEEEET---TE---EEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             ccCCcceEeccCCCCCCccCCCCCccceEEc---CE---EEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcCC
Confidence            457789999 6  567899999999999985   44   9999999975598876 999999999999999999864

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.83  E-value=2.5e-21  Score=136.08  Aligned_cols=68  Identities=35%  Similarity=0.717  Sum_probs=43.4

Q ss_pred             CCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         14 TETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        14 ~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...||| +  .++.++|+|||||||++...++. |+|+||+|||.. |.... |+|||||+.|++||+++++..
T Consensus       487 ~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~-~~lvGIvS~G~~-C~~~~~PgVYTrVs~y~~WI~~~i~~~  558 (565)
T 2xrc_A          487 EKEMECAGTYDGSIDACKGDSGGPLVCMDANNV-TYVWGVVSWGEN-CGKPEFPGVYTKVANYFDWISYHVGRP  558 (565)
T ss_dssp             TTTEEEEEEC----------CCCEEEEECTTCC-EEEEEEECC-------CCCCEEEEEGGGGHHHHHHHC---
T ss_pred             CCceEEeCCCCCCCccCCCccccceEEEeCCCc-EEEEEEEeeCCC-CCCCCCCEEEEEHHHHHHHHHHHhccc
Confidence            345999 6  44579999999999999865455 999999999988 98776 999999999999999998754

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=99.83  E-value=3.6e-21  Score=121.35  Aligned_cols=68  Identities=43%  Similarity=0.735  Sum_probs=57.0

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      +...+++.||| +  ..+.++|+|||||||++.   +.   |+||+|||...|.... |+|||||+.|++||++++++
T Consensus       151 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~---~~---l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 1lo6_A          151 YPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCG---DH---LRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA  222 (223)
T ss_dssp             STTTCCTTEEEEECTTTCCBCCTTTTTCEEEET---TE---EEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC-
T ss_pred             hCCCCCCCeEEeecCCCCCeeccccCCCcEEeC---CE---EEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHhcc
Confidence            44467899999 6  457899999999999985   44   9999999943398766 99999999999999999875

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=99.83  E-value=1.1e-20  Score=136.90  Aligned_cols=72  Identities=38%  Similarity=0.677  Sum_probs=63.5

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ....+++.||| +  .++.++|+|||||||++... + +|+|+||+|||.+ |.... |+|||+|+.|++||+++|+++
T Consensus       716 ~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~~-~-~~~LvGIvS~G~g-C~~~~~PgVYTrVs~y~dWI~~~i~~N  791 (791)
T 4dur_A          716 LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEK-D-KYILQGVTSWGLG-CARPNKPGVYVRVSRFVTWIEGVMRNN  791 (791)
T ss_dssp             TTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEET-T-EEEEEEECCTTTC-CBBTTBCEEEEEGGGTHHHHHHHHHHC
T ss_pred             cCCCCCCCeEEeccCCCCCCCCCCCcccceEEEeC-C-eEEEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHHHHHhC
Confidence            34578999999 7  56789999999999999864 4 4999999999998 98877 999999999999999999864

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=99.83  E-value=8.8e-21  Score=119.75  Aligned_cols=69  Identities=35%  Similarity=0.719  Sum_probs=58.2

Q ss_pred             CCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecC-CCCCCCCCcEEEeccccHHHHHHHhhhcC
Q psy17087         12 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECGIGSPGIYTRITAYLPWIIARMAYEV   84 (84)
Q Consensus        12 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~-~~C~~~~p~v~t~v~~~~~WI~~~~~~~~   84 (84)
                      .+++.||| + ..+.++|+|||||||++..   . ++|+||+||+. ..|....|.+||+|+.|++||+++++..+
T Consensus       159 ~~~~~~~Ca~~~~~~~~C~GDSGgPl~~~~---~-~~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~~~~~~  230 (230)
T 2hlc_A          159 IIVESTICGDTSDGKSPCFGDSGGPFVLSD---K-NLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGIKF  230 (230)
T ss_dssp             SSCTTEEEECCTTSCBCCTTCTTCEEEEGG---G-TEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHCCCC
T ss_pred             cccCCeEEecCCCCCCcCCCCCCCeeEECc---C-CEEEEEEEEeCCCCCCCCCCCEEEEhHHhHHHHHHhhCcCC
Confidence            68899999 6 6678999999999999873   2 57999999987 22865459999999999999999997653

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=99.83  E-value=2.8e-21  Score=121.95  Aligned_cols=67  Identities=40%  Similarity=0.731  Sum_probs=57.1

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ..+++.||| +  ..+.+.|+|||||||++.   +.   |+||+||+...|.... |+|||+|+.|++||+++++++
T Consensus       153 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  223 (224)
T 2qxi_A          153 DLLENSMLCAGIPDSKKNACNGDSGGPLVCR---GT---LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKH  223 (224)
T ss_dssp             GGCCTTEEEEECTTCCCBCCTTCTTCEEEET---TE---EEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHHHHHT
T ss_pred             CcCCCCeEEecCCCCCCccCCCCccccEEEC---CE---EEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHhcc
Confidence            457899999 6  456899999999999984   44   9999999943398766 999999999999999999764

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=99.83  E-value=1e-20  Score=120.13  Aligned_cols=64  Identities=41%  Similarity=0.741  Sum_probs=56.8

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccc-cHHHHHHHhhh
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITA-YLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~-~~~WI~~~~~~   82 (84)
                      .+++.||| +  .++.++|+|||||||++.   +.   |+||+|||.. |.... |+|||+|+. |++||+++++.
T Consensus       168 ~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~---~~---l~Gi~S~g~~-C~~~~~p~vyt~v~~~y~~WI~~~~~~  236 (240)
T 1mza_A          168 FITKDMVCAGDAKGQKDSCKGDAGGPLICK---GV---FHAIVSGGHE-CGVATKPGIYTLLTKKYQTWIKSNLVP  236 (240)
T ss_dssp             CCCTTEEEEECTTSCCCCCTTCTTCEEEET---TE---EEEEECSSCC-SSCTTCCEEEEECCHHHHHHHHHHTCC
T ss_pred             cCCCCeEeecCCCCCCccCCCCCCCeeEEC---CE---EEEEEEECCC-CCCCCCCcEEEeChHHHHHHHHHhccC
Confidence            57899999 6  457899999999999984   54   9999999987 99766 999999999 99999999874

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=99.83  E-value=2.5e-21  Score=122.11  Aligned_cols=67  Identities=42%  Similarity=0.750  Sum_probs=56.5

Q ss_pred             CCCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087          9 GDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         9 ~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      +...+++.||| + ..+.+.|+|||||||++.   +.   |+||+|||...|.... |+|||+|+.|++||+++++
T Consensus       156 ~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~---~~---l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  225 (225)
T 1npm_A          156 YPGKITEGMVCAGSSNGADTCQGDSGGPLVCD---GM---LQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             STTTCCTTEEEEECTTCCBCCTTCTTCEEEET---TE---EEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             hCCCCCCCEEeecCCCCCeecCCCCCchheEC---CE---EEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            44467899999 6 457899999999999984   44   9999999943398766 9999999999999999874

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=99.83  E-value=2.7e-21  Score=131.68  Aligned_cols=70  Identities=40%  Similarity=0.647  Sum_probs=57.5

Q ss_pred             CCCCeec-C-CCCCCCccCCCCcccEEEeC----CCCeEEEEEEEeec-CCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         13 VTETKFL-V-FPGKDSCNGDSGGPLVWKNN----DTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        13 i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~----~~~~~~l~Gi~s~~-~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...||| + ..+.++|+|||||||++...    .+.+|+|+||+||| .. |.... |+|||||+.|++||+++++.+
T Consensus       298 ~~~~~iCAg~~~g~d~C~GDSGGPL~~~~~~~~~~~~~~~l~GIvS~G~~~-Cg~~~~PgVYTrVs~y~~WI~~~i~~~  375 (408)
T 2xxl_A          298 VPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVT-CGQISLPGLYTNVGEYVQWITDTMASN  375 (408)
T ss_dssp             CCTTEEEECCSCSSSGGGSCTTCEEEEEECCTTCSSCEEEEEEEEEECCCC-TTSCCCCEEEEEGGGGHHHHHHHHHHH
T ss_pred             CCCceEeecCCCCCccCCCcccChhhcCccceEEECCEEEEEEEEEECCCC-CCCCCCCeEEEEHHHHHHHHHHHHhhc
Confidence            5668999 7 55789999999999954321    12359999999999 55 99877 999999999999999998753

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=99.82  E-value=2.9e-20  Score=128.20  Aligned_cols=72  Identities=21%  Similarity=0.422  Sum_probs=59.9

Q ss_pred             CCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC-CCCC---------CC-C------cEEEeccc
Q psy17087         11 ISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGI---------GS-P------GIYTRITA   71 (84)
Q Consensus        11 ~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~-~C~~---------~~-p------~v~t~v~~   71 (84)
                      ..++++||| + ..+.++|+|||||||++... + +|+|+||+|||.. .|..         .. |      +|||+|+.
T Consensus       414 ~~~~~~~iCag~~~~~~~C~GDSGGPL~~~~~-~-~~~l~GIvS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~  491 (509)
T 2odp_A          414 EVVTDQFLCSGTQEDESPCKGESGGAVFLERR-F-RFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFR  491 (509)
T ss_dssp             GTSCTTEEEECCTTCCCCCGGGTTCEEEEEET-T-EEEEEEEEEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGG
T ss_pred             ccccCCEEEeCCCCCCcccCCCccCceEEEEC-C-eEEEEEEEEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHH
Confidence            358999999 7 67789999999999999864 4 4999999999972 3962         23 5      59999999


Q ss_pred             cHHHHHHHhhhcC
Q psy17087         72 YLPWIIARMAYEV   84 (84)
Q Consensus        72 ~~~WI~~~~~~~~   84 (84)
                      |++||+++++.++
T Consensus       492 ~~~WI~~~~~~~~  504 (509)
T 2odp_A          492 MQPWLRQHLGDVL  504 (509)
T ss_dssp             CHHHHHHHHTTTS
T ss_pred             HhHHHHHHhCCcc
Confidence            9999999998653

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=99.82  E-value=1.4e-20  Score=118.49  Aligned_cols=65  Identities=22%  Similarity=0.306  Sum_probs=57.3

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .++++||| +  .++.+.|+|||||||++.   +.   |+||+||+.. |....|++||+|+.|++||+++++..
T Consensus       164 ~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~---~~---l~Gi~S~g~~-C~~~~p~vyt~v~~~~~WI~~~i~~~  231 (235)
T 3h7t_A          164 YIYDGVFCAGGEYDETYIGYGDAGDPAVQN---GT---LVGVASYISS-MPSEFPSVFLRVGYYVLDIKDIISGK  231 (235)
T ss_dssp             GCSTTEEEECBTTTTBBCCTTCTTCEEEET---TE---EEEEECCCTT-CCTTSCEEEEEGGGGHHHHHHHHTTC
T ss_pred             cccCCeEecCCCCCCCccccCCCCCceeeC---Ce---EEEEEEecCC-CCCCCCceEEEHHHHHHHHHHHHhCC
Confidence            48899999 6  447899999999999984   55   9999999998 98834999999999999999999865

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=99.82  E-value=1.4e-20  Score=133.47  Aligned_cols=69  Identities=38%  Similarity=0.764  Sum_probs=50.1

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ..+++.||| +  .++.++|+|||||||++..+ +. |+|+||+|||.. |.... |+|||||+.|++||+++++.
T Consensus       552 ~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~-~~-~~lvGIvS~G~~-C~~~~~P~vyT~V~~y~~WI~~~~~~  624 (625)
T 2f83_A          552 HKITHKMICAGYREGGKDACKGDSGGPLSCKHN-EV-WHLVGITSWGEG-CAQRERPGVYTNVVEYVDWILEKTQA  624 (625)
T ss_dssp             SCCCTTBCCC----------CCCTTCEEEEEET-TE-EEEEEEEEECCC-----CCCCEEEEGGGGHHHHHHTC--
T ss_pred             CCCCCCeEEeecCCCCCcCCCCCcccceEEEEC-Ce-EEEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            358899999 6  45789999999999999864 44 999999999988 98766 99999999999999998863

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=99.82  E-value=3e-20  Score=117.91  Aligned_cols=64  Identities=31%  Similarity=0.625  Sum_probs=55.3

Q ss_pred             CCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEee--c--CCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087         13 VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSY--G--TPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus        13 i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~--~--~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      +++.||| +  .++.++|+|||||||++..  +. |+|+||+||  +  .. |.... |+|||||+.|++||+++|
T Consensus       170 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~--~~-~~l~Gi~S~~~~~g~~-C~~~~~p~vyt~V~~~~~WI~~~~  241 (241)
T 1m9u_A          170 IWDNHICVQDPAGNTGACNGDSGGPLNCPD--GG-TRVVGVTSWVVSSGLG-ACLPDYPSVYTRVSAYLGWIGDNS  241 (241)
T ss_dssp             CCTTEEEECCTTSCCBCCTTCTTCEEEEES--SS-EEEEEEEEECCBCTTS-CBCTTSCEEEEEGGGTHHHHHHHC
T ss_pred             ccCCcEEECcCCCCCeeecCcCCccEEEeC--CC-EEEEEEEEEeccCCCC-ccCCCCCEEEEEhHHhHhHHhhhC
Confidence            7899999 6  4567899999999999974  44 899999999  4  45 88766 999999999999999875

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=99.82  E-value=1.8e-20  Score=117.95  Aligned_cols=63  Identities=41%  Similarity=0.955  Sum_probs=55.5

Q ss_pred             CCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         13 VTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        13 i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      +.+.||| + ..+.++|+|||||||++.   +.   |+||+|||.. |....|+|||+|+.|++||++++++
T Consensus       158 ~~~~~~Ca~~~~~~~~C~GDSGgPL~~~---~~---l~GI~S~g~~-C~~~~p~vyt~V~~~~~WI~~~~~~  222 (222)
T 1eq9_A          158 VIDSHICTLTKRGEGACHGDSGGPLVAN---GA---QIGIVSFGSP-CALGEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             CCTTEEEECCCTTCBCCTTCTTCEEEET---TE---EEEEEEECST-TTSSSCEEEEEGGGGHHHHHHTSCC
T ss_pred             CCccEEeecCCCCCeeeeCCccceEEEC---CE---EEEEEEECCC-cCCCCCCEEEEHHHHHHHHHHHhhC
Confidence            7889999 6 667889999999999984   44   9999999987 9874499999999999999998863

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=99.82  E-value=1.1e-20  Score=119.66  Aligned_cols=65  Identities=37%  Similarity=0.741  Sum_probs=56.5

Q ss_pred             CCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         13 VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        13 i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +.+.||| +  ..+.+.|+|||||||++.   +.   |+||+||+...|.... |+|||||+.|++||+++++.+
T Consensus       156 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  224 (231)
T 2aiq_A          156 LAATTLCAGILEGGKDTCKGDSGGPLICN---GQ---FQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGN  224 (231)
T ss_dssp             CCSSEEEEECTTCSCBCCTTCTTCEEEET---TE---EEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             CCcCcEEeccCCCCCcccCCcCCCcEEEC---CE---EEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcCC
Confidence            7899999 6  567899999999999985   54   9999999943398766 999999999999999998764

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=99.82  E-value=2.9e-20  Score=117.15  Aligned_cols=65  Identities=43%  Similarity=0.775  Sum_probs=56.7

Q ss_pred             CCCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         11 ISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        11 ~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..+++.||| +..+.+.|+|||||||++.   +   +|+||+||+...|.... |+|||+|+.|++||+++++
T Consensus       162 ~~~~~~~~Ca~~~~~~~C~GDsGgPL~~~---~---~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  228 (228)
T 2xw9_A          162 GAITERLMCAESNRRDSCKGDAGGPLVCG---G---VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TCCCTTEEEECCSSCBCCTTCTTCEEEET---T---EEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             CcccCCEEecCCCCCccCCCCCcccEEEC---C---EEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHhC
Confidence            467899999 7777889999999999984   4   49999999983498766 9999999999999999874

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=99.82  E-value=2e-20  Score=117.65  Aligned_cols=67  Identities=31%  Similarity=0.473  Sum_probs=57.8

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ......+.||| +  ..+.+.|+|||||||++.   +   +|+||+|||.. |... |+|||+|+.|++||+++++++
T Consensus       157 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~---~---~l~Gi~S~g~~-c~~~-p~vyt~v~~~~~WI~~~i~~n  226 (226)
T 4ag1_A          157 FRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA---G---VAQGIVSYGRS-DAKP-PAVFTRISHYRPWINQILQAN  226 (226)
T ss_dssp             STTCCTTTEEEESCTTSCCBCCTTCTTCEEEET---T---EEEEEEEECBT-TCCS-CEEEEEHHHHHHHHHHHHHHC
T ss_pred             ccCcCccceEeeccCCCCCcCccCCCCCceEEc---C---EEEEEEEECCC-CCCC-CCEEEEhHHHHHHHHHHHhcC
Confidence            34455889999 6  467899999999999984   3   59999999998 8766 999999999999999999864

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.81  E-value=4e-20  Score=126.93  Aligned_cols=70  Identities=29%  Similarity=0.634  Sum_probs=56.2

Q ss_pred             CCCCCeec-C-C-C--CCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC-CCC----CCC-Cc----EEEeccccHHHH
Q psy17087         12 SVTETKFL-V-F-P--GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECG----IGS-PG----IYTRITAYLPWI   76 (84)
Q Consensus        12 ~i~~~~~C-~-~-~--~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~-~C~----~~~-p~----v~t~v~~~~~WI   76 (84)
                      .++++||| + . +  +.++|+|||||||++... + +|+|+||+|||.. .|.    ... |+    |||+|+.|++||
T Consensus       408 ~~~~~~iCag~~~~~~~~~~C~GDSGGPL~~~~~-~-~~~l~GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI  485 (497)
T 1rrk_A          408 VVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR-S-RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWL  485 (497)
T ss_dssp             TSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEET-T-EEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHH
T ss_pred             cCCCCeEEeCCCCCCCCCcCCCCCCCCeeEEEeC-C-EEEEEEEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHH
Confidence            58899999 6 3 2  578999999999999864 4 4999999999982 398    344 75    999999999999


Q ss_pred             HHHhhhc
Q psy17087         77 IARMAYE   83 (84)
Q Consensus        77 ~~~~~~~   83 (84)
                      +++++.+
T Consensus       486 ~~~~~~~  492 (497)
T 1rrk_A          486 KEKLQDE  492 (497)
T ss_dssp             HHHTTTS
T ss_pred             HHHhCcc
Confidence            9999753

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=99.81  E-value=4e-20  Score=116.45  Aligned_cols=64  Identities=39%  Similarity=0.667  Sum_probs=55.6

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      ..+++.||| +  ..+.++|+|||||||++. + +.   |+||+||+.. |..+. |+|||+|+.|++||++++
T Consensus       157 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~-g~---l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          157 SAITNQMFCAGVSSGGKDSCQGDSGGPIVDS-S-NT---LIGAVSWGNG-CARPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             TTSCTTEEEECCTTCCCBCCTTCTTCEEECT-T-CC---EEEEEEECSS-SSCTTCCEEEEETTTSHHHHHHHC
T ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCcceECc-C-Ce---EEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHhhC
Confidence            357899999 7  457899999999999985 2 44   9999999987 98766 999999999999999875

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=99.81  E-value=4e-20  Score=116.17  Aligned_cols=65  Identities=25%  Similarity=0.471  Sum_probs=57.0

Q ss_pred             CCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         12 SVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        12 ~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .+++.||| +..+.+.|+|||||||++.   +.   |+||+||+.. |....|+|||+|+.|++||+++++++
T Consensus       163 ~~~~~~~Ca~~~~~~~C~GDsGgPl~~~---~~---l~Gi~S~g~~-c~~~~p~vyt~v~~~~~WI~~~i~~~  228 (228)
T 3h7o_A          163 FLSLQVFCAQKVGVSLESGDAGDPTVQQ---DT---LVGVAAYFPK-RPEGAPEVFTKVGSYVSWIQDIIKKK  228 (228)
T ss_dssp             CCCSSEEEEECTTCCCCGGGTTCEEEET---TE---EEEEECCCTT-CCTTCCEEEEEGGGTHHHHHHHHTTC
T ss_pred             cCCceEEecCCCCCcCCCCCCCCcceec---Ce---EEEEEeecCc-CCCCCCcEEEEHHHHHHHHHHHhhcC
Confidence            57899999 7555899999999999984   44   9999999988 98744999999999999999999864

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=99.81  E-value=4.4e-20  Score=116.90  Aligned_cols=64  Identities=36%  Similarity=0.683  Sum_probs=54.9

Q ss_pred             CCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecC--CCCCCCC-CcEEEecc-ccHHHHHHHhhhc
Q psy17087         13 VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT--PECGIGS-PGIYTRIT-AYLPWIIARMAYE   83 (84)
Q Consensus        13 i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~--~~C~~~~-p~v~t~v~-~~~~WI~~~~~~~   83 (84)
                      +.+.||| +  ..+.++|+|||||||++.   +.   |+||+|||.  . |.... |+|||+|+ .|++||+++++..
T Consensus       163 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~GI~S~g~~~~-C~~~~~p~vyt~v~~~~~~WI~~~~~~~  233 (234)
T 1orf_A          163 IGMNMVCAGSLRGGRDSCNGDSGSPLLCE---GV---FRGVTSFGLENK-CGDPRGPGVYILLSKKHLNWIIMTIKGA  233 (234)
T ss_dssp             CCTTEEEEECSSCCCBCCTTCTTCEEEET---TE---EEEEEEECCTTC-TTCTTSCEEEEECCHHHHHHHHHHHCC-
T ss_pred             cCCCEEEecCCCCCCcCCCCCCCCeEEEC---CE---EEEEEEEcCCCC-CCCCCCCCEEEEchHHHHHHHHHHHHhc
Confidence            3449999 6  367899999999999984   54   999999997  5 98766 99999999 9999999999865

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=99.80  E-value=8.5e-20  Score=115.26  Aligned_cols=65  Identities=38%  Similarity=0.772  Sum_probs=55.3

Q ss_pred             CCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC-CCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~-~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+++.||| + ..+.++|+|||||||++.   +   +|+||+|||.. .|....|+|||+|+.|++||+++++.
T Consensus       157 ~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~---~---~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~~~~  224 (226)
T 1azz_A          157 IVTDGNICIDSTGGKGTCNGDSGGPLNYN---G---LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             CCCTTEEEECCTTTCBCCTTCTTCEEEET---T---EEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHCC
T ss_pred             cCCCceEeecCCCCCccCCCCCCcceEEC---C---EEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHhCC
Confidence            47899999 7 667899999999999963   4   49999999972 28764499999999999999999875

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.80  E-value=1.2e-19  Score=129.33  Aligned_cols=69  Identities=25%  Similarity=0.535  Sum_probs=58.6

Q ss_pred             CCCCCCeec-C-CC---CCCCccCCCCcccEEEeCCCCeEEEEEEEeecC--CCCCC---CC-C-----cEEEeccccHH
Q psy17087         11 ISVTETKFL-V-FP---GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT--PECGI---GS-P-----GIYTRITAYLP   74 (84)
Q Consensus        11 ~~i~~~~~C-~-~~---~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~--~~C~~---~~-p-----~v~t~v~~~~~   74 (84)
                      ..+++.||| + ..   +.++|+|||||||++... + +|+|+||+|||.  . |..   .. |     +|||+|+.|++
T Consensus       649 ~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~~~-~-~~~lvGIvS~G~~~~-C~~~~~~~~p~~~~~~vyt~V~~~~~  725 (741)
T 3hrz_D          649 EVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR-S-RFIQVGVISWGVVDV-CKNQKRQKQVPAHARDFHINLFQVLP  725 (741)
T ss_dssp             GTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEET-T-EEEEEEEEEEESSCC-CC------CCCTTCEEEEEEGGGSHH
T ss_pred             cccCCCeEecCCcCCCCCCCcCcCcccCceEEeeC-C-eEEEEEEEeecCCcc-cCCcccccCCCCCccceEEEhHHhHH
Confidence            468999999 6 32   678999999999999875 4 499999999997  5 987   45 8     99999999999


Q ss_pred             HHHHHhhh
Q psy17087         75 WIIARMAY   82 (84)
Q Consensus        75 WI~~~~~~   82 (84)
                      ||++++++
T Consensus       726 WI~~~i~~  733 (741)
T 3hrz_D          726 WLKEKLQD  733 (741)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHhcC
Confidence            99999987

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=99.80  E-value=5.5e-20  Score=115.99  Aligned_cols=61  Identities=34%  Similarity=0.549  Sum_probs=51.2

Q ss_pred             CCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         14 TETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        14 ~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .+.||| +  ..+.++|+|||||||++.   +.   |+||+|||   |.... |+|||+|+.|++||+++++++
T Consensus       163 ~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~S~g---c~~~~~p~vyt~v~~~~~WI~~~~~~~  227 (227)
T 1iau_A          163 STIELCVGDPEIKKTSFKGDSGGPLVCN---KV---AQGIVSYG---RNNGMPPRACTKVSSFVHWIKKTMKRY  227 (227)
T ss_dssp             TTTEEEESCTTSCCBCCTTCTTSEEEET---TE---EEEEEEEE---CTTSCSCEEEEEGGGGHHHHHHHHHC-
T ss_pred             CCcEEEeECCCCCCeeeecCCCchheEe---eE---EEEEEeEe---cCCCCCCeEEEEHHHHHHHHHHHHhhC
Confidence            345999 7  346899999999999984   44   99999998   66555 999999999999999998753

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=99.79  E-value=1.2e-19  Score=113.89  Aligned_cols=65  Identities=34%  Similarity=0.551  Sum_probs=55.7

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      +.....+.+|| +  ....+.|+|||||||++.   +   +|+||+|||.. |... |++||+|+.|++||+++++
T Consensus       157 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~---~---~l~Gi~S~g~~-c~~~-p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          157 YRYYEYKFQVCVGSPTTLRAAFMGDSGGPLLCA---G---VAHGIVSYGHP-DAKP-PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             TTCCCTTTEEEECCTTSCCBCCTTTTTCEEEET---T---EEEEEEEECCT-TCCS-CEEEEEHHHHHHHHHHHHC
T ss_pred             ccccCcCCEEEecCCCCCCeeccCCCCCeEEEc---c---eeeEEEEECCC-CCCC-CcEEEEHHHhHHHHHHHhC
Confidence            34456889999 6  456899999999999985   3   49999999988 8765 9999999999999999874

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=99.79  E-value=8.6e-20  Score=115.20  Aligned_cols=69  Identities=38%  Similarity=0.568  Sum_probs=55.4

Q ss_pred             CCCCCCCCCCCCeec-C-CCC-CCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087          5 NDHKGDISVTETKFL-V-FPG-KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus         5 ~~~~~~~~i~~~~~C-~-~~~-~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      |...+...+++.||| + ..+ ...|+|||||||++.   +.   |+||+|||   |.... |+|||||+.|++||++++
T Consensus       153 C~~~~~~~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~---~~---l~Gi~S~g---c~~~~~p~vyt~V~~y~~WI~~~~  223 (227)
T 1euf_A          153 CIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPLVCN---GV---AQGIVSYG---RNDGTTPDVYTRISSFLSWIHSTM  223 (227)
T ss_dssp             HHTTCTTCCTTTEEEESCTTSCCBCCTTCTTCEEEET---TE---EEEEEEEC---CTTCCSCEEEEEGGGTHHHHHHHT
T ss_pred             hhHhhcCcCCCcEEEccCCCCCCcccccCCCCceEEC---CE---EEEEEEEe---CCCCCCCeEEEEHHHhHHHHHHHH
Confidence            444455568899999 7 332 667899999999984   44   99999998   65555 999999999999999998


Q ss_pred             hh
Q psy17087         81 AY   82 (84)
Q Consensus        81 ~~   82 (84)
                      +.
T Consensus       224 ~~  225 (227)
T 1euf_A          224 RR  225 (227)
T ss_dssp             C-
T ss_pred             hh
Confidence            64

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=99.79  E-value=4.8e-20  Score=119.93  Aligned_cols=69  Identities=14%  Similarity=0.225  Sum_probs=55.8

Q ss_pred             CCCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      +...++++||| + ..+  .|++||||||++..+ +. |+|+||+||+.  |.... |+|||+|+.|++||+++|+..
T Consensus       207 ~~~~~~~~~~Ca~~~~~--~~~gDSGgPlv~~~~-~~-~~l~GIvS~g~--c~~~~~p~vyt~V~~y~~WI~~~~~~~  278 (283)
T 3f1s_B          207 LNVTVTTRTYCERSSVA--AMHWMDGSVVTREHR-GS-WFLTGVLGSQP--VGGQAHMVLVTKVSRYSLWFKQIMNAH  278 (283)
T ss_dssp             HTSCCCTTEEEEECSSC--GGGBCTTCEEEEECS-SC-EEEEEEECCCS--GGGCSSEEEEEEGGGGHHHHHHHHTC-
T ss_pred             hcCCCCCCeEcccCCCC--CCCCCCCCcEEEEEC-CE-EEEEEEEEeCC--CCCCCcceEEEEhHHhHHHHHHHhhcc
Confidence            34568999999 6 333  567799999999754 55 99999999975  55555 999999999999999999864

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=99.78  E-value=3.3e-19  Score=111.99  Aligned_cols=63  Identities=33%  Similarity=0.533  Sum_probs=54.7

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ...+.||| +  ....+.|+|||||||++.   +   +|+||+|||.. |... |++||+|+.|++||+++|++
T Consensus       162 ~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~---~---~l~Gi~S~g~~-c~~~-p~vyt~V~~~~~WI~~~i~~  227 (227)
T 3fzz_A          162 YNRANEICVGDSKIKGASFEEDSGGPLVCK---R---AAAGIVSYGQT-DGSA-PQVFTRVLSFVSWIKKTMKH  227 (227)
T ss_dssp             CCTTTEEEECCCSSCBCCTTTTTTCEEEET---T---EEEEEEEECCT-TCSS-SEEEEEGGGTHHHHHHHHTC
T ss_pred             cCCCceEEEeCCCCCCcccccCCccceEEe---c---CCcEEEEECCC-CCCC-CeEEEEhHHhHHHHHHHHhC
Confidence            34789999 7  457889999999999985   3   49999999987 8755 99999999999999999874

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=99.78  E-value=2.2e-19  Score=113.10  Aligned_cols=63  Identities=33%  Similarity=0.601  Sum_probs=51.7

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ...+.||| +  ..+.+.|+|||||||++.   +   +|+||+|||.  |....|+|||+|+.|++||+++++.
T Consensus       159 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~---~l~Gi~S~g~--~~~~~p~vyt~V~~~~~WI~~~~~s  224 (224)
T 1cgh_A          159 YDPRRQICVGDRRERKAAFKGDSGGPLLCN---N---VAHGIVSYGK--SSGVPPEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             CCTTTEEEECCTTSCCBCCTTCTTCEEEET---T---EEEEEEEECC--TTCCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             CCCcceEeeccCCCCCeEeeCCCccceEEc---c---EEEEEEEEEC--CCCCCCeEEEEHHHhHHHHHHHhhC
Confidence            34566999 6  346899999999999984   4   4999999997  3333399999999999999999863

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=99.76  E-value=1.2e-18  Score=109.27  Aligned_cols=59  Identities=25%  Similarity=0.554  Sum_probs=50.0

Q ss_pred             eec-C-C-CCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         17 KFL-V-F-PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        17 ~~C-~-~-~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ||| + . .+.+.|+|||||||++.   +.   |+||+||+.+.|.... |++||+|+.|++||+++++
T Consensus       156 ~~Ca~~~~~~~~~C~GDSGgPl~~~---~~---l~Gi~S~~~g~C~~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          156 NVCTLVRGRQAGVCFGDSGSPLVCN---GL---IHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             SEEEECTTSCCBCCTTCTTCEEEET---TE---EEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             eeeeccCCCCCeeCCCcCCCceEEc---cE---EEEEEEeCCccCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            899 6 3 37899999999999985   44   9999999432398776 9999999999999999874

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.76  E-value=5.2e-19  Score=116.29  Aligned_cols=68  Identities=15%  Similarity=0.237  Sum_probs=54.8

Q ss_pred             CCCCCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087          9 GDISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         9 ~~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      +...++++||| +.. ...|++||||||++..+ + +|+|+||+||+.  |.... |+|||+|+.|++||+++|+
T Consensus       248 ~~~~~~~~~~Ca~~~-~~~~~gDsGgPl~~~~~-~-~~~l~Gi~S~g~--~~~~~~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          248 LNVTVTTRTYCERSS-VAAMHWMDGSVVTREHR-G-SWFLTGVLGSQP--VGGQAHMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             HTCCCCTTEEEEECS-CCCCCCCTTCEEEEEET-T-EEEEEEEECCCC--SSCCTTEEEEEEGGGCHHHHHHHHC
T ss_pred             hcCcCCCceeECCCC-CCCcCCCCCCCEEEecC-C-EEEEEEEEEECC--CCCCCcceEEEEhHHhHHHHHHHhC
Confidence            34468899999 622 23678899999999864 4 499999999974  55555 9999999999999999874

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=99.76  E-value=9.7e-19  Score=110.05  Aligned_cols=61  Identities=30%  Similarity=0.586  Sum_probs=52.5

Q ss_pred             Ceec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         16 TKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        16 ~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .||| +  ..+.+.|+|||||||++.   +   +|+||+||+...|... |++||+|+.|++||++++++.
T Consensus       157 ~~~Ca~~~~~~~~~C~GDSGgPl~~~---g---~l~Gi~S~g~~~C~~~-p~vyt~V~~~~~WI~~~~~~~  220 (225)
T 1a7s_A          157 NNVCTGVLTRRGGICNGDGGTPLVCE---G---LAHGVASFSLGPCGRG-PDFFTRVALFRDWIDGVLNNP  220 (225)
T ss_dssp             TEEEEECSSSSCBCCTTCTTCEEEET---T---EEEEEEEEECSSTTSS-CEEEEEGGGGHHHHHHHHHSC
T ss_pred             CceEEeccCCCCCcccCCCcchheeC---C---EEEEEEEEccCCcCCC-CcEEEEhHHhHHHHHHHhcCC
Confidence            7899 6  346799999999999986   4   4999999994339876 999999999999999998753

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=99.73  E-value=6.9e-18  Score=105.79  Aligned_cols=61  Identities=28%  Similarity=0.562  Sum_probs=51.2

Q ss_pred             CCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         15 ETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        15 ~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..||| +  ..+.+.|+|||||||++.   +.   |+||+||+...|.... |++||+|+.|++||+++++
T Consensus       157 ~~~~Ca~~~~~~~~~C~GDSGgPL~~~---~~---l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          157 PHNICTFVPRRKAGICFGDSGGPLICD---GI---IQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             TTEEEEECSSSSCBCCTTCTTCEEEET---TE---EEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CceeeeccCCCCCCCCCCCCCCeeEEC---CE---EeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence            34899 6  346889999999999984   54   9999999662288766 9999999999999999875

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=99.56  E-value=7.1e-16  Score=96.35  Aligned_cols=60  Identities=20%  Similarity=0.301  Sum_probs=49.3

Q ss_pred             CCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhh
Q psy17087         15 ETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        15 ~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      +...| . ..+.+.|+|||||||++..  +.   |+||+||+.. |. ..|++||+|+.|++||+++++
T Consensus       153 ~~~~c~~~~~~~~~C~GDSGgPl~~~~--g~---lvGi~S~g~~-c~-~~p~v~t~v~~~~~WI~~~~~  214 (215)
T 1p3c_A          153 TREDTNLAYYTIDTFSGNSGSAMLDQN--QQ---IVGVHNAGYS-NG-TINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             CEECSSEEEECCCCCTTCTTCEEECTT--SC---EEEECCEEEG-GG-TEEEEEBCCHHHHHHHHHHHT
T ss_pred             CcccchheeeccccCCCCCCCeeEccC--Ce---EEEEEecccC-CC-ccCceeEechHHHHHHHHHhc
Confidence            34456 3 4467899999999999852  44   9999999987 88 339999999999999999875

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.45  E-value=8.8e-15  Score=89.93  Aligned_cols=47  Identities=34%  Similarity=0.381  Sum_probs=39.7

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHH
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   79 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~   79 (84)
                      +|+|||||||++.   +.   |+||+||+.. |.... |++||+|+.|++||+..
T Consensus       136 ac~GDSGGPlv~~---~~---~vGI~s~g~~-~~~~~~p~vyt~v~~~~~wI~~~  183 (185)
T 2qa9_E          136 AEPGDSGGPLYSG---TR---AIGLTSGGSG-NCSSGGTTFFQPVTEALSAYGVS  183 (185)
T ss_dssp             CCTTCTTCEEEET---TE---EEEEEEEEEE-ETTTEEEEEEEEHHHHHHHHTCE
T ss_pred             CCCCCccceEEEC---CE---EEEEEEecCC-CCCCCCcEEEEEHHHHHHhhCcE
Confidence            4999999999975   34   9999999976 54445 99999999999999754

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.41  E-value=2.5e-13  Score=88.24  Aligned_cols=60  Identities=20%  Similarity=0.306  Sum_probs=45.9

Q ss_pred             CCCCCCCeec-C-CC-CCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCC---CCcEEEeccccHH
Q psy17087         10 DISVTETKFL-V-FP-GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG---SPGIYTRITAYLP   74 (84)
Q Consensus        10 ~~~i~~~~~C-~-~~-~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~---~p~v~t~v~~~~~   74 (84)
                      ...+.+.||| + .. ..++|+|||||||++.    . +.|+||+|||...|...   .|+|||||+.|.+
T Consensus       170 ~~~~~~~~iCag~~~~~gdtC~gdsGgPl~~~----~-~~~~Gi~s~g~~~C~~~~~~~p~vyt~v~~~~~  235 (268)
T 1arb_A          170 GGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSP----E-KRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWT  235 (268)
T ss_dssp             TSSSCSSEEEEECCTTSCCCCTTCTTCEEECT----T-SCEEEEEEECSCCTTCCGGGSEEEEEEHHHHHH
T ss_pred             cccccCCeEEEeeecCCCCCccCcccCCcEee----C-CEEEEEEeecCcccCCCCCCCCceEEEeeeeec
Confidence            3346789999 6 32 3479999999999873    1 34999999997449875   4999999976653

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.22  E-value=3.5e-12  Score=78.81  Aligned_cols=56  Identities=21%  Similarity=0.302  Sum_probs=39.9

Q ss_pred             CeecCCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCC--CCCCcE-EEeccccHHHHHHHhh
Q psy17087         16 TKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG--IGSPGI-YTRITAYLPWIIARMA   81 (84)
Q Consensus        16 ~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~--~~~p~v-~t~v~~~~~WI~~~~~   81 (84)
                      .++|  .+.+.|+|||||||+...  +.   |+||+||+.. |.  ...+++ |+  +.|++||+++++
T Consensus       141 ~~~~--~~~~~~~GdSGGPl~~~~--g~---lvGI~s~g~~-~~~~~~~~~v~~~--~~~~~wI~~~~~  199 (200)
T 2w7s_A          141 TFME--FDAYAQPGNSGSPVLNSK--HE---LIGILYAGSG-KDESEKNFGVYFT--PQLKEFIQNNIE  199 (200)
T ss_dssp             TEEE--ECSCCCTTCTTCEEECTT--SC---EEEEEEEEC-----CCCEEEEECC--HHHHHHHHHTSC
T ss_pred             CEEE--EcceeCCCCccCeEECcC--CE---EEEEEecccc-CCCCccceeeecH--HHHHHHHHhhcc
Confidence            4555  124689999999999632  55   9999999987 64  222566 56  889999999875

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.15  E-value=1.1e-11  Score=76.52  Aligned_cols=59  Identities=15%  Similarity=0.308  Sum_probs=42.1

Q ss_pred             CCeecCCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC--CCCCCCCcEEEeccccHHHHHHHhh
Q psy17087         15 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP--ECGIGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        15 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~--~C~~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..++|  ...+.|+|||||||+..  .+.   |+||+|++..  .|....+++|.. +.|++||++++.
T Consensus       143 ~~~~~--~~~~~~~GdSGGPl~~~--~g~---lvGI~s~g~~~~~~~~~~~~~~~~-~~~~~wI~~~~~  203 (204)
T 2vid_A          143 GSSIV--YSAHTESGNSGSPVLNS--NNE---LVGIHFASDVKNDDNRNAYGVYFT-PEIKKFIAENID  203 (204)
T ss_dssp             TTEEE--ECCCCCGGGTTCEEECT--TSC---EEEEEEEECC---CCCCEEEECCC-HHHHHHHHHHSC
T ss_pred             CCeEE--EecccCCCCccCcEECC--CCe---EEEEEecCccCCCcccccceeEeC-HHHHHHHHhhcC
Confidence            45566  13468999999999953  245   9999999974  255444445444 889999999875

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.11  E-value=1.4e-11  Score=75.34  Aligned_cols=46  Identities=33%  Similarity=0.481  Sum_probs=38.2

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHH
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWII   77 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~   77 (84)
                      .|+|||||||++.   +.   ++||+||+...|....|++|++|+.|++|+.
T Consensus       132 ~~~GDSGGPlv~~---~~---~vGI~s~g~~~~~~~~~~v~~~v~~~~~~l~  177 (181)
T 2sga_A          132 AQPGDSGGSLFAG---ST---ALGLTSGGSGNCRTGGTTFYQPVTEALSAYG  177 (181)
T ss_dssp             CCTTCTTCEEEET---TE---EEEEEEEEEEETTTEEEEEEEEHHHHHHHHT
T ss_pred             cCCCCCCCEEEEC---CE---EEEEEEeeCCCCcCCCceEEEEHHHHHHhcC
Confidence            4689999999975   44   9999999975365434999999999999985

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.09  E-value=3.1e-11  Score=78.28  Aligned_cols=52  Identities=15%  Similarity=0.312  Sum_probs=40.7

Q ss_pred             CCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        23 ~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ..+.|+|||||||+..  .+.   |+||+|||.. |... +++|+ ++.|++||++.+..
T Consensus       161 ~~~~c~GdSGGPLv~~--~g~---lvGIvS~G~~-~~~~-~~~~~-~~~~~~wI~~~i~~  212 (274)
T 2o8l_A          161 DLSTTGGNSGSPVFNE--KNE---VIGIHWGGVP-NEFN-GAVFI-NENVRNFLKQNIED  212 (274)
T ss_dssp             SCCCCTTCTTCEEECT--TSC---EEEEEEEEET-TTEE-EEEEC-CHHHHHHHHHHCTT
T ss_pred             CcccCCCCchhheecc--CCe---EEEEEeCccc-CCCC-ceEEe-cHHHHHHHHHHHhh
Confidence            3578999999999963  145   9999999987 7642 55555 68899999988753

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.07  E-value=4.2e-11  Score=77.44  Aligned_cols=57  Identities=14%  Similarity=0.264  Sum_probs=42.9

Q ss_pred             CeecCCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         16 TKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        16 ~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+||  ...++|+|||||||+..  .+.   |+||+|||.. |... +++|+ ++.|++||++.+..
T Consensus       156 ~~i~--~~~~~c~GdSGGPLv~~--~g~---lvGIvS~G~~-~~~~-~~~~~-~~~~~~wI~~~i~~  212 (268)
T 1wcz_A          156 EAMQ--YDLSTTGGNSGSPVFNE--KNE---VIGIHWGGVP-NEFN-GAVFI-NENVRNFLKQNIED  212 (268)
T ss_dssp             TEEE--ESBCCCTTCTTCEEECT--TSC---EEEEEEEEET-TTEE-EEEEC-CHHHHHHHHHHCTT
T ss_pred             CeEE--EecccCCCCccCeEEcc--CCE---EEEEEeCCcc-CCcc-eeEEc-CHHHHHHHHHHHHh
Confidence            4455  13568999999999953  145   9999999987 7643 56555 68899999988753

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=98.64  E-value=7.5e-09  Score=65.00  Aligned_cols=38  Identities=26%  Similarity=0.167  Sum_probs=29.5

Q ss_pred             CCeecCCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCC
Q psy17087         15 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI   60 (84)
Q Consensus        15 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~   60 (84)
                      ..|+|.     .|+|||||||++... +. ++|+||+|||.+ |..
T Consensus       158 ~~~~Ca-----~~~GDSGGPlv~~~~-g~-~~lvGIvS~G~g-c~~  195 (218)
T 3cp7_A          158 QGIPCN-----MTGGSSGGPWFLGNG-TG-GAQNSTNSYGYT-FLP  195 (218)
T ss_dssp             EEEECC-----CCTTCTTCEEEESSS-SS-SCEEEECCEEET-TEE
T ss_pred             EEecCC-----CCCCCcCCeeEEccC-CC-eEEEEEEccccC-CCC
Confidence            378882     267999999998743 44 679999999988 864

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=98.63  E-value=1.8e-08  Score=63.81  Aligned_cols=48  Identities=21%  Similarity=0.192  Sum_probs=36.1

Q ss_pred             CCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCC-CCC-CcEEEeccccHHHHH
Q psy17087         24 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGS-PGIYTRITAYLPWII   77 (84)
Q Consensus        24 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~-~~~-p~v~t~v~~~~~WI~   77 (84)
                      .++|+|||||||+..  .+.   |+||+||+.. |. ... ..+.+.|...+.|+.
T Consensus       188 ~~~c~GdSGGPl~~~--~g~---lvGI~s~g~~-c~~~~~~~~~~~~i~~~~~~~l  237 (242)
T 1agj_A          188 GFTVPGNSGSGIFNS--NGE---LVGIHSSKVS-HLDREHQINYGVGIGNYVKRII  237 (242)
T ss_dssp             CCCCGGGTTCEEECT--TSE---EEEEEEEEEE-CSSTTCEEEEEEECCHHHHHHH
T ss_pred             CCcCCCCCchHhccc--CCE---EEEEEecccc-ccCcCCCceeeEEehHHHHHHH
Confidence            468999999999963  144   9999999988 86 333 788889875555443

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=98.62  E-value=4.2e-08  Score=60.45  Aligned_cols=53  Identities=23%  Similarity=0.194  Sum_probs=41.4

Q ss_pred             CCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHH
Q psy17087         15 ETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI   76 (84)
Q Consensus        15 ~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI   76 (84)
                      .+++| .   ...|.|||||||+..   +.   ++||.|++...|....|++|++|..+++.+
T Consensus       129 ~~~i~t~---~~~~~GdSGgpl~~~---~~---~vGi~s~~~~~~~~~~~~~~~~i~~~~~~l  182 (187)
T 1hpg_A          129 YNMVRTT---ACSAGGDSGGAHFAG---SV---ALGIHSGSSGCSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EEEEEEC---CCCCTTCTTCEEEET---TE---EEEEEEEESCCBTTBCCCEEEEHHHHHHHH
T ss_pred             eeeEEec---cccCCCCCCCeEEEC---CE---EEEEEEeeCCCCCCCCceEEEEHHHHHHHc
Confidence            34677 3   356899999999965   44   999999997558764599999998887654

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=98.38  E-value=7.7e-08  Score=59.55  Aligned_cols=43  Identities=28%  Similarity=0.497  Sum_probs=35.7

Q ss_pred             cCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHH
Q psy17087         28 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI   76 (84)
Q Consensus        28 ~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI   76 (84)
                      +|||||||++.   +.   ++||+|++...|....|++|++|..+++|.
T Consensus       134 ~GDSGgpl~~~---~~---~vGi~s~~~~~c~~~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          134 PGDSGGSLLAG---NQ---AQGVTSGGSGNCRTGGTTFFQPVNPILQAY  176 (189)
T ss_dssp             TTCTTCEEEET---TE---EEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             CCCccCeEEEC---CE---EEEEEeecCCCCCCCCcEEEEEHHHHHHHC
Confidence            79999999963   55   999999987546654599999999998886

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=98.30  E-value=7.9e-08  Score=59.39  Aligned_cols=41  Identities=34%  Similarity=0.605  Sum_probs=32.6

Q ss_pred             cCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHH
Q psy17087         28 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLP   74 (84)
Q Consensus        28 ~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~   74 (84)
                      .|||||||++.   +.   ++||+||+...|....+.+|++|..+++
T Consensus       137 ~GDSGgpl~~~---~~---~vGi~s~g~~~c~~~~~~~~~pi~~~l~  177 (186)
T 2pfe_A          137 GGDSGGPWLTG---SQ---AQGVTSGGTGDCRSGGITFFQPINPLLS  177 (186)
T ss_dssp             TTCTTCEEEET---TE---EEEEEEEEEEETTTEEEEEEEEHHHHHH
T ss_pred             CCCccCeEEEC---CE---EEEEEeecCCCCCCCCcEEEEEHHHHHH
Confidence            69999999963   55   9999999864376555899999876654

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=98.23  E-value=7.1e-07  Score=55.44  Aligned_cols=56  Identities=20%  Similarity=0.165  Sum_probs=35.9

Q ss_pred             CeecCCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEec-cccHHHHHHH
Q psy17087         16 TKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRI-TAYLPWIIAR   79 (84)
Q Consensus        16 ~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v-~~~~~WI~~~   79 (84)
                      .++|  .....|+|||||||+...  +.   |+||+||+....+.... .|+.+ ..+.+|++..
T Consensus       145 ~~i~--~~~~~~~GdSGGPlv~~~--g~---lvGI~s~g~~~~~~~~~-~~~~~~~~i~~f~~~~  201 (210)
T 2as9_A          145 NILN--FDAYIEPGNSGSPVLNSN--NE---VIGVVYGGIGKIGSEYN-GAVYFTPQIKDFIQKH  201 (210)
T ss_dssp             TEEE--EECCCCTTCTTCEEECTT--SC---EEEEECCSCCCTTCSSE-EEEECCHHHHHHHHTT
T ss_pred             CeEE--EcCccCCCCccCcEECCC--Ce---EEEEEecccccCCcccc-ccEEEcHHHHHHHHHh
Confidence            4566  124579999999999642  66   99999998763333222 35554 3455666544

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.99  E-value=7.4e-06  Score=54.54  Aligned_cols=54  Identities=22%  Similarity=0.238  Sum_probs=42.2

Q ss_pred             CCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        23 ~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ....|.|||||||+..  +|.   ++||+|++...+.... .+.+.-+....+||++.++
T Consensus       172 da~i~~G~SGGPLvn~--~G~---vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~  226 (348)
T 3qo6_A          172 DAAINPGNSGGPLLDS--SGT---LIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVR  226 (348)
T ss_dssp             CSCCCTTCTTCEEECT--TSC---EEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             eCCcCCCCcHHHhhCC--CCe---EEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHh
Confidence            3467999999999953  267   9999999865454333 7888888889999998765

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=97.94  E-value=2.2e-06  Score=52.90  Aligned_cols=41  Identities=32%  Similarity=0.600  Sum_probs=32.0

Q ss_pred             cCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHH
Q psy17087         28 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLP   74 (84)
Q Consensus        28 ~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~   74 (84)
                      .|||||||++.   +.   ++||+|++...|....+++|+.|...++
T Consensus       140 ~GDSGgpl~~~---~~---~vGi~s~~~~~~~~~~~~~~~pi~~~l~  180 (188)
T 2oua_A          140 PGDSGGSFISG---TQ---AQGVTSGGSGNCRTGGTTFYQEVNPMLN  180 (188)
T ss_dssp             TTCTTCEEEET---TE---EEEEEEEEEEETTTEEEEEEEESHHHHH
T ss_pred             CCCccceEEEC---CE---EEEEEeccCCCCCCCCceEEEEHHHHHH
Confidence            69999999953   55   9999999864476545899999876543

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=97.70  E-value=1.3e-05  Score=50.87  Aligned_cols=28  Identities=25%  Similarity=0.188  Sum_probs=23.0

Q ss_pred             CCCccCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         24 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        24 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      .+.|+|||||||+..  .+.   |+||+||+..
T Consensus       179 ~~~~~GdSGGPlv~~--~g~---lvGI~s~g~~  206 (246)
T 1qtf_A          179 GYTEVGNSGSGIFNL--KGE---LIGIHSGKGG  206 (246)
T ss_dssp             SCCCGGGTTCEEECT--TCC---EEEEEEEEET
T ss_pred             CCCCCCCchhheECC--CCE---EEEEEecccc
Confidence            467999999999953  256   9999999865

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=97.47  E-value=7.1e-05  Score=47.19  Aligned_cols=49  Identities=20%  Similarity=0.283  Sum_probs=35.0

Q ss_pred             CCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhh
Q psy17087         24 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        24 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      ...|.|||||||+..  +|.   |+||.||+.. ..   -+...-+....+|+++..+
T Consensus       182 a~i~~G~SGGPLv~~--~G~---vVGI~s~~~~-~g---~~~aip~~~i~~~l~~~~~  230 (231)
T 3tjo_A          182 AIINYGNAGGPLVNL--DGE---VIGINTLKVT-AG---ISFAIPSDKIKKFLTESHD  230 (231)
T ss_dssp             SCCCTTTTTSEEECT--TSC---EEEEEEEEEE-TT---EEEEEEHHHHHHHHHHHHT
T ss_pred             CCcCCCCchhHeecC--CCe---EEEEEeEEec-CC---eEEEEEHHHHHHHHHHHhh
Confidence            356889999999943  267   9999999864 22   3455666777777776654

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=97.47  E-value=0.00018  Score=45.41  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=35.2

Q ss_pred             CCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCC---CCC-CcEEEeccccHHHHHHHhh
Q psy17087         25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG---IGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        25 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~---~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..|.|||||||+..  +|.   |+||++++...-.   ... .+...-+....+++++.++
T Consensus       170 ~i~~G~SGGPlv~~--~G~---vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~  225 (237)
T 3lgi_A          170 SINHGNSGGALVNS--LGE---LMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  225 (237)
T ss_dssp             CCCTTCTTCEEECT--TCC---EEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             ccCCCCchHHeeCC--CCe---EEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHH
Confidence            46899999999953  267   9999999765221   111 3455566667777777665

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=97.46  E-value=8.5e-05  Score=47.18  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=39.4

Q ss_pred             CCeecCCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCC-CCCcEEEeccccHHHHHHHhh
Q psy17087         15 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        15 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~-~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..+||.  +...|.|||||||+..  ++.   |+||.+++.. -.. ...+...-+....+++++.++
T Consensus       169 ~~~i~t--da~i~~G~SGGPLv~~--~G~---vvGI~s~~~~-~~~~~g~~faIP~~~~~~~~~~l~~  228 (239)
T 1l1j_A          169 VGLIQT--DAAINPGNSGGPLLNI--HGE---VIGINTAIVN-PQEAVNLGFAIPINTVKKFLDTILT  228 (239)
T ss_dssp             EEEEEE--SSCCCTTTTTSEEECS--SSE---EEEEECCCSC-CCSCCSCEEEEEHHHHHHHHGGGCC
T ss_pred             CCEEEE--CCCCCCCCccHHhccC--CCe---EEEEEeeeec-CCCcCceEEEEEHHHHHHHHHHHHH
Confidence            356771  2457999999999953  266   9999999864 111 125566677777777776653

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.22  E-value=0.00039  Score=45.62  Aligned_cols=59  Identities=20%  Similarity=0.137  Sum_probs=39.6

Q ss_pred             CCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCC---------CCCCcEEEeccccHHHHHHHhh
Q psy17087         14 TETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG---------IGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        14 ~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~---------~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      ...+|| .   ...|.|||||||+...  +.   ++||.+++.. -.         ....+...-+.....++++.++
T Consensus       154 ~~~~i~~d---~~~~~G~SGGPlv~~~--G~---vvGI~s~~~~-~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~  222 (324)
T 1y8t_A          154 VLDAIQTD---AAINPGNSGGALVNMN--AQ---LVGVNSAIAT-LGADSADAQSGSIGLGFAIPVDQAKRIADELIS  222 (324)
T ss_dssp             CEEEEEEC---SCCCTTCTTEEEECTT--SE---EEEEEEEECC-C-------CCCCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             cCCEEEEc---CCCCCCCccCcEECCC--Ce---EEEEEeeecc-cCcccccccccccceEEecCHHHHHHHHHHHHH
Confidence            356788 4   3579999999999642  56   9999999754 11         1114556666667777776554

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.20  E-value=0.00051  Score=45.06  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=40.2

Q ss_pred             CCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCC----CCCCcEEEeccccHHHHHHHhh
Q psy17087         15 ETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG----IGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        15 ~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~----~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..+|| .   ...|.|+|||||+..  ++.   ++||.+++.....    ....+.+.-+.....++++.++
T Consensus       151 ~~~i~~d---~~~~~G~SGGPl~~~--~G~---vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~  214 (318)
T 1te0_A          151 QNFLQTD---ASINHGNSGGALVNS--LGE---LMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  214 (318)
T ss_dssp             CCSEEES---SCCCTTTTTSEEECT--TCC---EEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             CCEEEEC---CCCCCCCCcCceECC--CCe---EEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHH
Confidence            45677 3   357999999999953  267   9999999864221    1124566777777777777654

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=97.17  E-value=0.0002  Score=44.99  Aligned_cols=29  Identities=38%  Similarity=0.534  Sum_probs=23.4

Q ss_pred             CCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         23 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        23 ~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      ....|+|||||||+...  |.   |+||++++..
T Consensus       175 ~~~~~~GdSGGPLv~~~--G~---vvGI~s~~~~  203 (237)
T 3k6y_A          175 RADVEQGDSGGPLIDLN--GQ---VLGVVFGAAI  203 (237)
T ss_dssp             ESCCCTTCTTCEEECTT--SC---EEEEEEEECS
T ss_pred             cCccCCCccHHHEECCC--CE---EEEEEEeecc
Confidence            34679999999999532  67   9999999765

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=97.14  E-value=0.00046  Score=44.04  Aligned_cols=52  Identities=19%  Similarity=0.133  Sum_probs=33.6

Q ss_pred             CCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCC-CCCcEEEeccccHHHHHHHhh
Q psy17087         25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        25 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~-~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..|.|+|||||+..  +|.   |+||.++....-.. ...+...-+....+++++.++
T Consensus       181 ~i~~G~SGGPLvn~--~G~---vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~  233 (245)
T 3sti_A          181 SINRGNSGGALLNL--NGE---LIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLID  233 (245)
T ss_dssp             CCCTTTTTSEEECT--TSC---EEEEEECCC------CCCEEEEEHHHHHHHHHHHHH
T ss_pred             CcCCCcchhHeecC--CCe---EEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHH
Confidence            46889999999843  267   99999987651111 114555566666777777654

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=96.75  E-value=0.00098  Score=43.93  Aligned_cols=47  Identities=19%  Similarity=0.282  Sum_probs=32.1

Q ss_pred             CCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHh
Q psy17087         25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM   80 (84)
Q Consensus        25 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~   80 (84)
                      ..|.|||||||+...  |.   ++||+||+.. ..   -+...-+.....|+++.+
T Consensus       166 ~i~~G~SGGPlv~~~--G~---vvGI~s~~~~-~g---~~~aip~~~i~~~l~~~~  212 (332)
T 3num_A          166 IINYGNAGGPLVNLD--GE---VIGINTLKVT-AG---ISFAIPSDKIKKFLTESH  212 (332)
T ss_dssp             CCCTTTTTSEEEETT--SC---EEEEEEEEEE-TT---EEEEEEHHHHHHHHHHHC
T ss_pred             CcCCCCcHHHhhCCC--Cc---EEEEEeeEec-cc---ceEEECHHHHHHHHHHHh
Confidence            467899999999532  67   9999999864 21   344555555666666543

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=96.70  E-value=0.0054  Score=46.26  Aligned_cols=51  Identities=27%  Similarity=0.394  Sum_probs=33.2

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhh
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      =.||||+||+.......+|+|+|+.+.+.. -... -..|.-+.  .+|++++++
T Consensus       203 ~~GDSGSPlF~yD~~~kKWvLvGv~s~g~~-~g~~-~~~~~~~~--~~f~~~~~~  253 (1048)
T 1wxr_A          203 EAGDSGSPLFAFDTVQNKWVLVGVLTAGNG-AGGR-GNNWAVIP--LDFIGQKFN  253 (1048)
T ss_dssp             CTTCTTCEEEEEETTTTEEEEEEEEEEESS-TTCS-CEEEEECC--HHHHHHHHH
T ss_pred             CCCCCCCeeeEEEcCCCeEEEEEEeccccc-CCcc-cceEEEeC--HHHhhhhhh
Confidence            459999999998865667999999985543 1111 13333333  277777655

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=96.69  E-value=0.00075  Score=41.75  Aligned_cols=40  Identities=30%  Similarity=0.628  Sum_probs=26.9

Q ss_pred             cCCCCcccEEEeCCCCeEEEEEEEeecC-----CCCCC---CCCcEEEecccc
Q psy17087         28 NGDSGGPLVWKNNDTRKHYLIGLVSYGT-----PECGI---GSPGIYTRITAY   72 (84)
Q Consensus        28 ~gdsGgPl~~~~~~~~~~~l~Gi~s~~~-----~~C~~---~~p~v~t~v~~~   72 (84)
                      .|||||||+-.  ++.   ++||.|++.     ..|..   .....|+.|...
T Consensus       140 ~GDSGGPl~~~--~g~---~vGI~s~~~~~~~~~~c~~~~~~g~~f~~Pi~~v  187 (198)
T 2h5c_A          140 RGDSGGSWITS--AGQ---AQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPI  187 (198)
T ss_dssp             TTCTTCEEECT--TCB---EEEEEEEECCCTTSBSTTSCGGGCCEEEEEHHHH
T ss_pred             CCcceeEEEee--CCE---EEEEEEeecCccCCCccccccCCceEEEEEHHHH
Confidence            69999999932  256   999999985     44632   125567666543

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=96.46  E-value=0.0018  Score=42.67  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=26.9

Q ss_pred             CCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         14 TETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        14 ~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      ...+|| .   ...|.|+|||||+..  +|.   |+||.+++..
T Consensus       158 ~~~~i~~d---~~~~~G~SGGPl~~~--~G~---vVGI~s~~~~  193 (325)
T 1lcy_A          158 NVEYIQTD---AAIDFGNAGGPLVNL--DGE---VIGVNTMKVT  193 (325)
T ss_dssp             CCCCEEES---SCCSTTTTTSEEEET--TSC---EEEEEEEEEE
T ss_pred             CCCEEEEc---CCCCCCCccccEECC--CCE---EEEEEeEeec
Confidence            456788 4   357999999999953  267   9999998753

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=96.31  E-value=0.0054  Score=40.82  Aligned_cols=51  Identities=20%  Similarity=0.152  Sum_probs=31.3

Q ss_pred             CCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087         25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus        25 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      ..|.|+|||||+..  +|.   ++||.++......... .+...-+.....++++.+
T Consensus       181 ~i~~GnSGGPLvn~--~G~---vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  232 (345)
T 3stj_A          181 SINRGNSGGALLNL--NGE---LIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLI  232 (345)
T ss_dssp             CCCTTCTTCEEECT--TSC---EEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHH
T ss_pred             ccCCCcCccceeCC--CCE---EEEEEeccccCCCCcceeEEEEehHHHHHHHHHHH
Confidence            46899999999943  267   9999998654222221 333444444455555544

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=96.18  E-value=0.011  Score=44.42  Aligned_cols=53  Identities=17%  Similarity=0.312  Sum_probs=33.1

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .=.||||+||+..+....+|.|+|+.+.+.+ .... -.-|+-+  ..+|+.+++.+
T Consensus       213 g~~GDSGSPLFayD~~~~KWvl~Gv~~~~~~-~~g~-~n~~~i~--~~~f~~~~~~~  265 (1011)
T 3syj_A          213 GSKGDSGSPMFIYDAEKQKWLINGILREGNP-FEGK-ENGFQLV--RKSYFDEIFER  265 (1011)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEECC----------EEEEEC--CHHHHHHHHHH
T ss_pred             CCCCCCCCcceeeEcCCCeEEEEEEeecccc-ccCc-ccceEEe--chHHhhhhhhc
Confidence            3469999999998876777999999987543 2221 1223322  24788877764

>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}

Probab=95.39  E-value=0.017  Score=43.32  Aligned_cols=29  Identities=28%  Similarity=0.485  Sum_probs=24.3

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEeec
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSYG   54 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~   54 (84)
                      .=.||||+||+..+....+|.|+|+.++.
T Consensus       258 ~~~GDSGSPlF~yD~~~~kWvl~Gvl~~~  286 (989)
T 3h09_A          258 AVLGDSGSPLFVYDREKGKWLFLGSYDFW  286 (989)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEEEEE
T ss_pred             CCcCCCCCccceeecccceEEEEEEeecc
Confidence            35699999999987766779999999863

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=95.15  E-value=0.023  Score=39.05  Aligned_cols=52  Identities=23%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             CCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        25 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..+.|+|||||+-.  .|.   ++||.++......... .+...-+.....++++.++
T Consensus       199 ~i~~GnSGGPl~n~--~G~---VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~  251 (451)
T 3pv2_A          199 AINPGNSGGALVNA--KGE---LIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIK  251 (451)
T ss_dssp             CCCGGGTTSEEEET--TCC---EEEEEECCC------CCCEEEEEHHHHHHHHHHHHH
T ss_pred             ccCCCCCcCcccCC--CCe---EEEEEeEeecCCCCccceeeeehhHHHHHHHHHHHh
Confidence            45789999999943  277   9999997654222211 3444555555566665543

>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}

Probab=95.10  E-value=0.021  Score=42.72  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=23.4

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEee
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSY   53 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~   53 (84)
                      .=.||||+||+..+....+|.|+|+.+-
T Consensus       203 ~~~GDSGSPlFaYD~~~~KWvl~GVl~~  230 (968)
T 3sze_A          203 ASQGDAGSALFVYDNQKKKWVVAGTVWG  230 (968)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEEEE
T ss_pred             CCcCCCCCcceeEEcCCCeEEEEEEEec
Confidence            3569999999998876777999999754

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=94.80  E-value=0.033  Score=38.09  Aligned_cols=52  Identities=19%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             CCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087         24 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus        24 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      ...|.|+|||||+-..  |.   ++||.++......... .+...-+.....++++.+
T Consensus       180 a~i~~GnSGGPl~n~~--G~---vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  232 (436)
T 4a8c_A          180 ASINRGNAGGALLNLN--GE---LIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLI  232 (436)
T ss_pred             CccCCCCCcCcccCCC--CE---EEEEEeeeccCCCCceeEEEEEehHHHHHHHHHHH
Confidence            3468899999998542  66   9999988654221111 233333344455555544

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=91.75  E-value=0.074  Score=33.00  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=18.0

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecC
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGT   55 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~   55 (84)
                      =.||||+|++-.   .+   ++||.+...
T Consensus       110 ~PGDSGsPVl~~---~~---vIGV~T~s~  132 (198)
T 1mbm_A          110 TSGDSGSAVVQG---DA---VVGVHTGSN  132 (198)
T ss_dssp             CGGGTTCEEEET---TE---EEEEEEEEE
T ss_pred             CCCCCCCccccC---Ce---EEEEEeccC
Confidence            358999999954   34   999999844

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A

Probab=90.19  E-value=0.15  Score=31.99  Aligned_cols=22  Identities=32%  Similarity=0.631  Sum_probs=17.0

Q ss_pred             CCCCcccEEEeCCCCeEEEEEEEeecC
Q psy17087         29 GDSGGPLVWKNNDTRKHYLIGLVSYGT   55 (84)
Q Consensus        29 gdsGgPl~~~~~~~~~~~l~Gi~s~~~   55 (84)
                      ||||+||+-..  |+   ++||.+-..
T Consensus       125 GdSGsPVvn~d--G~---VIGVHt~s~  146 (213)
T 3fan_A          125 GDSGSPVITEA--GE---LVGVHTGSN  146 (213)
T ss_dssp             CSTTCEEEETT--SC---EEEEEEC--
T ss_pred             CCCCCccCCCC--Cc---EEEEEeccC
Confidence            99999999553  78   999988654

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=88.89  E-value=0.73  Score=31.59  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             CCccCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        25 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      ..+.|+|||||+-.  .|.   ++||.+....
T Consensus       204 ~i~~GnSGGpl~n~--~G~---vvGI~~~~~~  230 (448)
T 1ky9_A          204 AINRGNAGGALVNL--NGE---LIGINTAILA  230 (448)
T ss_dssp             CCTTSCCCSEEECT--TSC---EEEEEECSST
T ss_pred             CCCCCCCCCeeECC--CCE---EEEEEEEeec
Confidence            45789999999953  277   9999997643

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=87.84  E-value=0.23  Score=29.59  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=18.9

Q ss_pred             CCccCCCCcccEEEeCCCCeEEEEEEEeec
Q psy17087         25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYG   54 (84)
Q Consensus        25 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~   54 (84)
                      ..-.|.|||||+-.  +|+   ++||.+..
T Consensus       121 ~i~pGnSGGPl~n~--~G~---VVGI~~~~  145 (163)
T 2w5e_A          121 RTQDGMSGAPVCDK--YCR---VLAVHQTN  145 (163)
T ss_dssp             SCSSCCTTCEEECT--TSC---EEEEEEEE
T ss_pred             EeCCCCchhhEEcC--CCE---EEEEEccC
Confidence            35679999999943  267   99998753

>2hrv_A 2A cysteine proteinase; hydrolase (cysteine proteinase); 1.95A {Human rhinovirus 2} SCOP: b.47.1.4

Probab=84.96  E-value=1  Score=26.57  Aligned_cols=33  Identities=30%  Similarity=0.609  Sum_probs=25.7

Q ss_pred             CCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEecccc
Q psy17087         29 GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAY   72 (84)
Q Consensus        29 gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~   72 (84)
                      ||=||.|.|+   ..   ++||++.|..     +-..|+++..+
T Consensus       104 GDCGG~L~C~---HG---viGivTaGG~-----g~VaF~D~R~l  136 (142)
T 2hrv_A          104 GDCGGKLLCK---HG---VIGIVTAGGD-----NHVAFIDLRHF  136 (142)
T ss_dssp             TCTTCEEEET---TE---EEEEEEEECS-----SEEEEEEGGGG
T ss_pred             CCCCceeeeC---CC---ceEEEecCCC-----CEEEEEEchhh
Confidence            6889999998   45   9999998765     34458888765

>1z8r_A Coxsackievirus B4 polyprotein; beta barrel coordinated zinc ION, hydrolase; NMR {Human coxsackievirus B4}

Probab=84.82  E-value=0.98  Score=27.24  Aligned_cols=34  Identities=32%  Similarity=0.518  Sum_probs=26.3

Q ss_pred             CCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccH
Q psy17087         29 GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL   73 (84)
Q Consensus        29 gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~   73 (84)
                      ||=||.|.|+   ..   ++||+..|..     +-..|+++..+.
T Consensus       124 GDCGG~L~C~---HG---viGivTaGG~-----g~VaF~DiR~l~  157 (166)
T 1z8r_A          124 GDAGGILRCE---HG---VIGLVTMGGE-----GVVGFADVRDLL  157 (166)
T ss_dssp             CCCBSEEECS---SS---EEEEEEEECS-----SEEEEEESTTCC
T ss_pred             CCCCceeeeC---CC---ceEEEecCCC-----CEEEEEEcchhh
Confidence            6889999999   45   9999998765     345588887653

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=84.22  E-value=1  Score=31.89  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=18.3

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecC
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGT   55 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~   55 (84)
                      =.|.|||||+-.  .|.   ++||.+...
T Consensus       196 npGnSGGPLvn~--~Ge---VIGIntai~  219 (539)
T 4fln_A          196 NPGNSGGPAFND--QGE---CIGVAFQVY  219 (539)
T ss_dssp             CTTTTTSEEECS--SSC---EEEEECCCC
T ss_pred             cCCCccchhccC--CCc---EEEEEEEEe
Confidence            358999999843  277   999987654

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=80.08  E-value=0.73  Score=28.31  Aligned_cols=42  Identities=17%  Similarity=0.154  Sum_probs=27.5

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHH
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWII   77 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~   77 (84)
                      -.|+||+|++..   +.   +|||..-+.. -  ..-..-++++.+.+||.
T Consensus       146 ~~G~SGsP~~ng---~~---IVGvh~G~~~-~--~~~N~a~n~~~~~~~~~  187 (191)
T 1zyo_A          146 AAGWSGTPLYSS---RG---VVGMHVGFEE-I--GKLNRGVNMFYVANYLL  187 (191)
T ss_dssp             CTTCTTCEEECS---SC---EEEEEEEEEE-T--TTEEEEECHHHHHHHTC
T ss_pred             CCCCCCCcEEcC---Ce---EEEEEeCccc-C--CceeeeeehHHHhhhhh
Confidence            568999999975   44   8898875532 1  11334567777777753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	1e-16
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	4e-16
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	1e-15
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	1e-15
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	2e-15
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	2e-15
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	4e-15
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	3e-14
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	5e-14
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	8e-14
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	1e-13
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	2e-13
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	2e-13
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	2e-13
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	3e-13
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	4e-13
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	5e-13
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	5e-13
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	5e-13
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	1e-12
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	1e-12
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	1e-12
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	2e-12
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	2e-12
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	2e-12
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	2e-12
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	2e-12
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	3e-12
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	7e-12
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	9e-12
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	1e-11
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	1e-11
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	1e-11
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	1e-11
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	2e-11
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	3e-11
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	4e-11
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	6e-11
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	6e-11
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	6e-11
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	7e-11
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	1e-10
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	1e-10
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	1e-10
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	8e-10
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	2e-09
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	3e-09
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	4e-09
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	6e-09
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	6e-09
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	9e-09
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	1e-08
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	1e-08
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	2e-08
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	3e-08
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	3e-08
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	3e-08
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	3e-07
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	2e-06
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	0.002

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 1e-15
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ + 
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 4e-15
 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
             +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 185 TRRDSCQGDSGGPLVCKVNGT--WLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.8 bits (151), Expect = 3e-14
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G DSC GDSGGPL+ + N+     L G+ S+G        PG+Y R+  +  WI
Sbjct: 179 GVDSCQGDSGGPLMCQENNR--WLLAGVTSFGYQCALPNRPGVYARVPRFTEWI 230

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 5e-14
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G D+C GDSGGP V +++ +R  +  L G+VS+GT       PG+YT+++ +  WI   +
Sbjct: 183 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 242

Query: 81  A 81
            
Sbjct: 243 K 243

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 8e-14
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 5   NDHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSP 63
             + G I+          G D+C GDSGGPLV          L G+ S+G+  CG    P
Sbjct: 154 RAYPGKITEGMVCAGSSNGADTCQGDSGGPLVCDG------MLQGITSWGSDPCGKPEKP 207

Query: 64  GIYTRITAYLPWI 76
           G+YT+I  Y  WI
Sbjct: 208 GVYTKICRYTTWI 220

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 1e-13
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           G DSC GDSGGPLV    D   + L G+ S+G        PG+Y R++ ++ WI   M 
Sbjct: 189 GTDSCQGDSGGPLVCFEKDK--YILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 245

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 2e-13
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYG----------TPECGIGSPGIYTRITA 71
              ++C GDSGGPL+           +G++S+G            +    +   +  +  
Sbjct: 213 ADPNTCRGDSGGPLIVHKRSR--FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQ 270

Query: 72  YLPWIIARM 80
            LPW+  ++
Sbjct: 271 VLPWLKEKL 279

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score = 60.4 bits (145), Expect = 2e-13
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           KDSC GDSGGPL   +  +   YL G+VS+G      G PG+YT ++ ++ WI A  
Sbjct: 182 KDSCQGDSGGPLAASDTGS--TYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA 236

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 2e-13
 Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
           GKD+C  DSGGPL+          L G  SYG   CG  G P IYT +  +  WI   M 
Sbjct: 181 GKDTCRDDSGGPLICDG------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 59.7 bits (143), Expect = 4e-13
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 21  FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIAR 79
             GKD+C GDSGGPL+          L G+ S G   C    +P IY ++  +  WI   
Sbjct: 177 EGGKDTCAGDSGGPLICDG------VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKV 230

Query: 80  MA 81
           M 
Sbjct: 231 MK 232

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 5e-13
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G DSC GDSGGPL     D R  +  G+VS+G        PG+YTR+  +  WI
Sbjct: 183 GVDSCQGDSGGPLSSVEADGR-IFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 59.3 bits (142), Expect = 5e-13
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           GKDSC GDSGGP+V  +N      LIG VS+G         G+Y  + A   +I
Sbjct: 172 GKDSCQGDSGGPIVDSSN-----TLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 5e-13
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G+DSC GDSGGP V +   T   +L G++S+G      G  GIYT+++ Y+ WI  + 
Sbjct: 177 GRDSCQGDSGGPHVTEVEGT--SFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 1e-12
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 22  PGKDSCNGDSGGPLVWKN-NDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
            G DSC GDSGG    ++ ND  K Y  GLVS+G      G+ G+YTR+  Y+ WI+  M
Sbjct: 199 KGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWG---PQCGTYGLYTRVKNYVDWIMKTM 255

Query: 81  A 81
            
Sbjct: 256 Q 256

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 1e-12
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           G  +C  DSGGPL+          L G+ S+G   CG    P +YT++  +  WI   MA
Sbjct: 172 GSYTCEHDSGGPLICDG------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 225

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 1e-12
 Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP+V   + T   +L+GLVS+G     + + G+YT+++ YL WI   +
Sbjct: 184 QDACEGDSGGPMVASFHGT--WFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 58.1 bits (139), Expect = 2e-12
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNG------ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 76
           KDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 182 KDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECG-IGSPGIYTRITAYLPWIIARM 80
             +CNGDSGGPL  + +      + G+VS+G+   C     P ++TR++AY+ WI  ++
Sbjct: 193 ISACNGDSGGPLNCQADGQ--WDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.7 bits (138), Expect = 2e-12
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKD+C GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCNG------ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 57.5 bits (137), Expect = 2e-12
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 7/57 (12%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           + +C+GDSGGPLV           IG+VS+G+P C +G P +YTR+++++ WI A +
Sbjct: 171 EGACHGDSGGPLVANG------AQIGIVSFGSP-CALGEPDVYTRVSSFVSWINANL 220

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 3e-12
 Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 7/56 (12%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 76
            GKDSC GDSGGPLV  +      +L GLVS+G   CG    PG+YT +  Y  WI
Sbjct: 167 YGKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 56.3 bits (134), Expect = 7e-12
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           G D+C GDSGGP+  K+N       +G+VS+G      G PG+YT ++ +   I +  
Sbjct: 164 GVDTCQGDSGGPMFRKDNADE-WIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAA 220

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 9e-12
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 1   MNHPNDHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI 60
                D                 KDSC GDSGGP       T   YL G+VS+G     +
Sbjct: 162 SRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGT--WYLTGIVSWGQGCATV 219

Query: 61  GSPGIYTRITAYLPWIIARMA 81
           G  G+YTR++ Y+ W+   M 
Sbjct: 220 GHFGVYTRVSQYIEWLQKLMR 240

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 1e-11
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 21  FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIAR 79
              +DSC GDSGGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + 
Sbjct: 173 SNRRDSCKGDSGGPLVCG------GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSV 226

Query: 80  MA 81
           +A
Sbjct: 227 LA 228

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 55.4 bits (132), Expect = 1e-11
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWI 76
            GK +CNGDSGGPL +           G+ S+G    C  G P  +TR+T +L WI
Sbjct: 169 GGKGTCNGDSGGPLNYNG------LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWI 218

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
              C GD GGPLV + +  R   ++G++  G        PGI+ R+  Y  WI
Sbjct: 172 SGPCEGDYGGPLVCEQHKMR--MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 55.5 bits (132), Expect = 2e-11
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 173 GKDSCQGDSGGPVVCNG------QLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 54.7 bits (130), Expect = 3e-11
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 81
              C GDSGG L+            G+ S+G  EC       ++T++  +  WI   + 
Sbjct: 182 GSICLGDSGGALICDG------VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 54.4 bits (129), Expect = 4e-11
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 2   NHPNDHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI 60
           + P      +              SCNGDSGGPL  +  + +   + G+VS+G+   C  
Sbjct: 159 SKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQ-WQVHGIVSFGSSLGCNY 217

Query: 61  -GSPGIYTRITAYLPWIIARMA 81
              P ++TR++ Y+ WI + +A
Sbjct: 218 YHKPSVFTRVSNYIDWINSVIA 239

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 6e-11
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRIT-AYLPWIIARM 80
            KDSC GD+GGPL+ K           +VS G        PGIYT +T  Y  WI + +
Sbjct: 182 QKDSCKGDAGGPLICKG------VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 53.6 bits (127), Expect = 6e-11
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 81
           KD+C GDSGGPL+            G+VSYG   CG    PGIYT +  Y  WI   +A
Sbjct: 173 KDTCGGDSGGPLICNG------QFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIA 225

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.6 bits (127), Expect = 6e-11
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 21  FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
              + S  GDSGGPLV K          G+VSYG  +    +P  +T+++ +L WI
Sbjct: 174 KIKRASFRGDSGGPLVCKK------VAAGIVSYGQNDGS--TPRAFTKVSTFLSWI 221

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 53.6 bits (127), Expect = 7e-11
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 8/53 (15%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           + +  GDSGGPL+            G+VSYG P+     P I+TR++ Y+PWI
Sbjct: 175 RAAFMGDSGGPLLCAG------VAHGIVSYGHPDAK--PPAIFTRVSTYVPWI 219

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 52.9 bits (125), Expect = 1e-10
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLI-GLVSYGTPECGIGSPGIYTRITAYLPWI 76
               +CNGDSGGPL   +  TR   +   +VS G   C    P +YTR++AYL WI
Sbjct: 182 GNTGACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 1e-10
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
             DSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 KGDSCQGDSGGPVVCSG------KLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIA 221

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-10
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 1   MNHPNDHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI 60
           +N               F+       C GDSGGPL+          + G+ S+    C  
Sbjct: 146 LNVTVVTFFCRPHNICTFVPRRKAGICFGDSGGPLICDG------IIQGIDSFVIWGCAT 199

Query: 61  -GSPGIYTRITAYLPWIIARM 80
              P  +TR+  Y+ WI + +
Sbjct: 200 RLFPDFFTRVALYVDWIRSTL 220

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 8e-10
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 26  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
           +C GDSGG    ++ +T +    G+VS+G   C     G YT++  Y+ WI   M
Sbjct: 186 ACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CS-RGYGFYTKVLNYVDWIKKEM 238

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-09
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
              CNGD G PLV +          G+ S+    CG G P  +TR+  +  WI
Sbjct: 168 GGICNGDGGTPLVCEG------LAHGVASFSLGPCGRG-PDFFTRVALFRDWI 213

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 49.4 bits (116), Expect = 3e-09
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 25  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWI 76
             CNGDSGGPL  + N +  +Y+ G+ S+ +   C     P ++TR++AY+ W+
Sbjct: 181 SGCNGDSGGPLNCQVNGS--YYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWM 232

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 4e-09
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG-IGSPGIYTRITAYLPWIIARMA 81
           +  CNGDSGGPL     D     + G+ S+ +   C  I  P ++TR++A++ WI   +A
Sbjct: 172 RSGCNGDSGGPLNCPAADGS-WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA 230

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 6e-09
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 27  CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
             GDSGGPL+            G+VSYG  +     P ++TRI+ Y PWI
Sbjct: 176 FKGDSGGPLLCAG------VAQGIVSYGRSDAK--PPAVFTRISHYRPWI 217

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 48.2 bits (113), Expect = 6e-09
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 80
            +  C GDSGGPL    N   ++ + G+ S+ +   C +   P ++TR++AY+ WI   +
Sbjct: 180 VRSGCQGDSGGPLHCLVNG--QYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

Query: 81  A 81
           A
Sbjct: 238 A 238

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 9e-09
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 27  CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 80
            +GDSGGPLV            G+VSYG  +    +P +YTRI+++L WI + M
Sbjct: 178 FSGDSGGPLVCNG------VAQGIVSYGRNDGT--TPDVYTRISSFLSWIHSTM 223

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 1e-08
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 24  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 81
           K +  GDSGGPL+  N         G+VSYG        P ++TR++++LPWI   M 
Sbjct: 174 KAAFKGDSGGPLLCNN------VAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTMR 223

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 1e-08
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 9/61 (14%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRIT-AYLPWIIAR 79
           G+DSCNGDSG PL+ +          G+ S+G    CG    PG+Y  ++  +L WII  
Sbjct: 176 GRDSCNGDSGSPLLCEG------VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229

Query: 80  M 80
           +
Sbjct: 230 I 230

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-08
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWI 76
               C GDSG PLV          + G+ S+    C  G  P  +  +  ++ WI
Sbjct: 165 QAGVCFGDSGSPLVCNG------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 46.1 bits (108), Expect = 3e-08
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 6/51 (11%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 73
              S  GDSGG     +        +G+ S  +   G     I+  +T  L
Sbjct: 135 TACSAGGDSGGAHFAGS------VALGIHSGSSGCSGTAGSAIHQPVTEAL 179

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 3e-08
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 22  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
             K S  GDSGGPLV            G+VSYG        P   T++++++ WI
Sbjct: 174 IKKTSFKGDSGGPLVCNK------VAQGIVSYGRNNGM--PPRACTKVSSFVHWI 220

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 46.3 bits (108), Expect = 3e-08
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 21  FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECGIGSPGIYTRITAYLPWI 76
             GK  C GDSGGP V  +     + LIG+VS+ +   C  G P  ++R+T+Y+ WI
Sbjct: 170 SDGKSPCFGDSGGPFVLSDK----NLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 43.6 bits (101), Expect = 3e-07
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 27  CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 79
            +G+SG  ++ +N       ++G+ + G     I G P        ++ +  A+
Sbjct: 167 FSGNSGSAMLDQN-----QQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ 215

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 41.5 bits (96), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 2/54 (3%)

Query: 23  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 76
           G  +  G SG P+           L G  S  +   G      Y R+       
Sbjct: 186 GGVTEPGSSGSPIYSPEKRVLG-QLHGGPSSCSA-TGTNRSDQYGRVFTSWTGG 237

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 32.7 bits (73), Expect = 0.002
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 7   HKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIY 66
            KG I+  + + + +    +  G+SG P+        K+ +IG+   G P    G+  I 
Sbjct: 146 SKGKITYLKGEAMQYDL-STTGGNSGSPVF-----NEKNEVIGIHWGGVPNEFNGAVFIN 199

Query: 67  TRITAYL 73
             +  +L
Sbjct: 200 ENVRNFL 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.82
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.82
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	99.81
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.81
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	99.81
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	99.8
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	99.8
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.8
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	99.8
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	99.8
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.8
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	99.79
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	99.79
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	99.79
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	99.78
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	99.78
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	99.78
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	99.77
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	99.77
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	99.77
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	99.77
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	99.77
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	99.77
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	99.77
d1elva1	259	Complement C1S protease, catalytic domain {Human (	99.76
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	99.76
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	99.76
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	99.76
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	99.75
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	99.75
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	99.74
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	99.74
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	99.74
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	99.73
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	99.72
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	99.72
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	99.71
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	99.71
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	99.68
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	99.68
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	99.66
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	99.64
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	99.61
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	99.56
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.37
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	98.95
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	98.93
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	97.93
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	97.91
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	97.09
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	96.98
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	96.37
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	95.06
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	94.64
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	93.71
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	93.62
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	93.1
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	92.32
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	92.03
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	91.7

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.5e-21  Score=122.08  Aligned_cols=74  Identities=26%  Similarity=0.553  Sum_probs=58.0

Q ss_pred             CCCCCCCCCeec-C----CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCC-CC--------CCC-CcEEEecccc
Q psy17087          8 KGDISVTETKFL-V----FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG--------IGS-PGIYTRITAY   72 (84)
Q Consensus         8 ~~~~~i~~~~~C-~----~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~-C~--------~~~-p~v~t~v~~~   72 (84)
                      .....++++||| +    ..+.++|.|||||||++..+ +. |+|+||+|||... |.        ... |.|||||+.|
T Consensus       194 ~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~~~-~~-~~lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y  271 (287)
T d1rrka1         194 DISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR-SR-FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV  271 (287)
T ss_dssp             CGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEET-TE-EEEEEEEEEESCCCC--------CCTTCEEEEEEGGGG
T ss_pred             cccccccCCceEecccCCCcCCCCCCCCccCCeEEecC-Ce-EEEEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHH
Confidence            334567899999 5    33567899999999999865 44 9999999997531 32        123 7899999999


Q ss_pred             HHHHHHHhhhc
Q psy17087         73 LPWIIARMAYE   83 (84)
Q Consensus        73 ~~WI~~~~~~~   83 (84)
                      ++||+++|+++
T Consensus       272 ~~WI~~~i~~~  282 (287)
T d1rrka1         272 LPWLKEKLQDE  282 (287)
T ss_dssp             HHHHHHHTTTS
T ss_pred             HHHHHHHhcCC
Confidence            99999999864

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.82  E-value=2.4e-20  Score=115.19  Aligned_cols=74  Identities=28%  Similarity=0.501  Sum_probs=62.0

Q ss_pred             CCCCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCC-CCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          8 KGDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         8 ~~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~-C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ......++.++| . ....+.|.||+|+||++..+ +. |+|+||+||+... |.... |+|||||+.|++||+++|++|
T Consensus       163 ~~~~~~~~~~~c~~~~~~~~~c~gDsG~pl~~~~~-~~-~~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~n  240 (240)
T d1gvkb_         163 YWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVN-GQ-YAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN  240 (240)
T ss_dssp             TTGGGCCTTEEEECCSSSCBCCTTCTTCEEEEEET-TE-EEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHHC
T ss_pred             ccCCccCCceEEecCCCCCccccCccccceEEEEC-CE-EEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHHHhcC
Confidence            334457789999 6 66788999999999999875 44 9999999998752 66656 999999999999999999875

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.6e-20  Score=115.08  Aligned_cols=72  Identities=36%  Similarity=0.675  Sum_probs=62.1

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ......+.++| +  ....+.|.||+|+||++..+ +. |+|+||+||+.. |.... |.+||+|++|++||+++|+++
T Consensus       172 ~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~-~~-~~l~Gi~S~~~~-c~~~~~p~v~t~v~~~~~WI~~~i~~~  247 (247)
T d1rjxb_         172 LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEK-DK-YILQGVTSWGLG-CARPNKPGVYVRVSRFVTWIEGVMRNN  247 (247)
T ss_dssp             TTTCSCTTEEEESCSSSCCCBCCSCTTCEEEEECS-SS-EEEEEEECTTSC-CBBTTBCEEEEEGGGGHHHHHHHHHHC
T ss_pred             cCcccccceeEEeccCCCcccccCCccceEEEeeC-CE-EEEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHHhcC
Confidence            34456788999 6  56778999999999998875 55 999999999988 87766 999999999999999999874

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.81  E-value=6.7e-21  Score=117.86  Aligned_cols=75  Identities=32%  Similarity=0.546  Sum_probs=64.1

Q ss_pred             CCCCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHH
Q psy17087          3 HPNDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   78 (84)
Q Consensus         3 ~~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~   78 (84)
                      +.|...+.....+.++| +  ....+.|.||+||||++.      |+|+||+||+...|.... |.+||||++|++||++
T Consensus       156 ~~C~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~------~~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~WI~~  229 (235)
T d1tona_         156 EKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICD------GVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKK  229 (235)
T ss_dssp             GGCGGGGSTTGGGGEEEEECTTCSCBCCTTCTTCEEEET------TEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHH
T ss_pred             HHHHHHhCCCCCCCceEeCcCCCCccccCCCcCCeEEEc------CEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence            45666777778899999 5  567789999999999974      679999999986687656 9999999999999999


Q ss_pred             Hhhhc
Q psy17087         79 RMAYE   83 (84)
Q Consensus        79 ~~~~~   83 (84)
                      +++++
T Consensus       230 ~i~~~  234 (235)
T d1tona_         230 VMKEN  234 (235)
T ss_dssp             HHHHC
T ss_pred             HHHHC
Confidence            99875

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.81  E-value=7.9e-20  Score=112.89  Aligned_cols=72  Identities=32%  Similarity=0.600  Sum_probs=60.3

Q ss_pred             CCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCC-CCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         11 ISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        11 ~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~-C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ..+...++| . ....+.|.||+||||++...++. |+|+||+|++... |.... |+|||+|+.|++||+++|++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~C~gdsGgPl~~~~~~~~-~~L~Gi~S~g~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~~  241 (241)
T d1brup_         166 STVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQ-WQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIANN  241 (241)
T ss_dssp             GGCCTTEEEECCSSSSBCCTTCTTCEEEEECTTSC-EEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHHC
T ss_pred             ccccccceeecCCCCccccCCCcccceEEEcCCCC-EEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHhcC
Confidence            456677777 6 66788999999999998866455 9999999998753 55656 999999999999999999875

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-20  Score=117.40  Aligned_cols=75  Identities=35%  Similarity=0.624  Sum_probs=63.0

Q ss_pred             CCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087          5 NDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus         5 ~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      |...+...+.++++| +  ....+.|.+|+|+||++...+++ |+|+||+|++.. |.... |.|||||++|++||++++
T Consensus       162 C~~~~~~~~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~-~~L~Gi~s~~~~-c~~~~~p~vft~V~~y~~WI~~~~  239 (241)
T d1eaxa_         162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGR-IFQAGVVSWGDG-CAQRNKPGVYTRLPLFRDWIKENT  239 (241)
T ss_dssp             HHHHSTTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSC-EEEEEEEEECSS-SSCTTCCEEEEESGGGHHHHHHHH
T ss_pred             HHHHhCccccCccceeccCCCCcccccCcccceeEEEcCCCe-EEEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHh
Confidence            334455567889999 5  56678999999999999876565 999999999988 87666 999999999999999987


Q ss_pred             h
Q psy17087         81 A   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       240 g  240 (241)
T d1eaxa_         240 G  240 (241)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.7e-20  Score=113.03  Aligned_cols=71  Identities=37%  Similarity=0.740  Sum_probs=60.7

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ....+.+.++| +  ....+.|.||+|+||++..+ + +|+|+||+|++.. |.... |++||||+.|++||++++++
T Consensus       163 ~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~-~-~~~l~Gi~s~g~~-~~~~~~p~vft~v~~~~~WI~~~~~~  237 (237)
T d1xx9a_         163 RGHKITHKMICAGYREGGKDACKGDSGGPLSCKHN-E-VWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWILEKTQA  237 (237)
T ss_dssp             TTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEET-T-EEEEEEEEEEESS-SSCTTCCEEEECGGGGHHHHHHHHCC
T ss_pred             cCCCCCCceEEEecCCCCcccccCCccceeEEecC-C-EEEEEEEEEeCCC-CCCCCCCEEEEEhHHhHhHHHHHHCC
Confidence            34556889999 6  55678999999999999865 4 4999999999988 77666 99999999999999999874

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-19  Score=111.91  Aligned_cols=73  Identities=40%  Similarity=0.768  Sum_probs=62.0

Q ss_pred             CCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         10 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        10 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ...+.+.++| +  ....+.|.+|+||||++....+.+|+|+||+||+...|.... |+|||+|++|++||++++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~~~l~Gi~S~g~~~c~~~~~p~vft~v~~~~~WI~~~v~~  241 (242)
T d1q3xa1         165 RGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD  241 (242)
T ss_dssp             TTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CceeccceeeeeccCCCccccccccccceEEeeCCCCeEEEEEEEEeCCCCCCCCCCCEEEEEHHHhHHHHHHHHHc
Confidence            3456777888 5  566788999999999998765566999999999886688776 99999999999999999974

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1.3e-19  Score=112.07  Aligned_cols=73  Identities=32%  Similarity=0.569  Sum_probs=62.1

Q ss_pred             CCCCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCC-CCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         10 DISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        10 ~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~-C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...+++.++| .......|.+|+||||++...++. |+|+||+|++... |.... |++||+|++|++||+++|++|
T Consensus       157 ~~~~~~~~~c~~~~~~~~~~gdsGgpl~~~~~~~~-~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~~i~~~  232 (232)
T d1fona_         157 GITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGS-WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIASN  232 (232)
T ss_dssp             GGGCCTTEEEECCSSSCSTTSCTTCEEEEECSSSC-EEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHHHC
T ss_pred             CceeeeceeeeccccccccccCCCCceEEEccCCC-EEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHHHHHcC
Confidence            3457788899 777778999999999999876555 9999999997642 77666 999999999999999999875

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3e-19  Score=111.82  Aligned_cols=74  Identities=34%  Similarity=0.703  Sum_probs=62.0

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCC--CCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNND--TRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~--~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ....+.+.++| .  .+..+.|+||+||||++....  ..+|+|+||+||+.. |.... |.|||+|+.|++||+++++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~-c~~~~~p~vft~V~~y~~WI~~~i~~  244 (255)
T d1z8ga1         166 YGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTG-CALAQKPGVYTKVSDFREWIFQAIKT  244 (255)
T ss_dssp             TTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSS-SSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             cCccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEECCC-CCCCCCCEEEEEHHHhHHHHHHHHHH
Confidence            34466778887 5  567789999999999988632  345999999999988 88777 99999999999999999986


Q ss_pred             c
Q psy17087         83 E   83 (84)
Q Consensus        83 ~   83 (84)
                      +
T Consensus       245 ~  245 (255)
T d1z8ga1         245 H  245 (255)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=2.6e-19  Score=111.79  Aligned_cols=71  Identities=34%  Similarity=0.624  Sum_probs=59.8

Q ss_pred             CCCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC-CCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087          9 GDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         9 ~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~-~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      .....++.++| + ....+.|.+|+|+||++..+ +. |+|+||+||+.. .|.... |.+||||+.|++||+++|+
T Consensus       176 ~~~~~~~~~~c~~~~~~~~~c~gd~G~Pl~~~~~-~~-~~L~Gi~S~~~~~~c~~~~~p~vyt~v~~y~~WI~~~i~  250 (251)
T d1pytd_         176 WGTTVKETMVCAGGDGVISACNGDSGGPLNCQAD-GQ-WDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             TTTTCCTTEEEECCSCSSCCCCSCTTCEEEEESS-SS-EEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             ccccccCceEEeccCCCCccccCCCCCceEEeeC-CE-EEEEEEEEECCCCCCCCCCCCeEEEEHHHhHHHHHHhcc
Confidence            34557788899 6 66788999999999999865 55 999999999863 276666 9999999999999999986

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9e-20  Score=112.16  Aligned_cols=70  Identities=37%  Similarity=0.707  Sum_probs=59.6

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ....+..+++| .  ......|.||+|+||++..+ + +|+|+||+||+.. |.... |++||+|+.|++||+++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~-~-~~~L~Gv~s~g~~-c~~~~~p~vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         160 SSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFK-D-TYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             CSSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEET-T-EEEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             cCceEeecceeeecccccCCCcCCCcccccEEecC-C-eEEEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            34456677787 4  66778999999999999875 4 4999999999998 87776 9999999999999999985

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-19  Score=112.00  Aligned_cols=69  Identities=35%  Similarity=0.764  Sum_probs=58.0

Q ss_pred             CCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         10 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        10 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ...+.+..+| +  ....+.|.+|+|+||++..+ +. |+|+||+|++.. |.... |.+||+|++|++||+++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~-~~-~~l~Gi~s~g~~-~~~~~~p~vyt~v~~~~~WI~~~~~  233 (235)
T d1rfna_         161 KFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVE-GT-SFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWIKEKTK  233 (235)
T ss_dssp             SSCCCTTEEEESCSSCSCBCCTTCTTCEEEEESS-SC-EEEEEEEEEESS-SSCTTCCEEEEEGGGTHHHHHHHHC
T ss_pred             CceecCCeeEeecCCCCccccCCCCCceeEEecC-Ce-EEEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHhc
Confidence            3445566666 4  66788999999999999765 44 999999999998 87766 9999999999999999986

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.2e-19  Score=111.51  Aligned_cols=70  Identities=30%  Similarity=0.678  Sum_probs=59.3

Q ss_pred             CCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         10 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        10 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ...+++.++| .  ....+.|.||+|+||++... +. |+|+||+|++.. |.... |.+||+|+.|++||+++|+.
T Consensus       155 ~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~-~~-~~l~Gi~s~g~~-c~~~~~p~vyt~i~~~~~WI~~~i~~  228 (234)
T d1si5h_         155 KVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQH-KM-RMVLGVIVPGRG-CAIPNRPGIFVRVAYYAKWIHKIILT  228 (234)
T ss_dssp             ---CCTTEEEEECSSSCCBCCTTCTTCEEEEECS-SS-EEEEEEECSCSC-SSCTTCCEEEEEGGGGHHHHHHHHSS
T ss_pred             ccccCCccEEEccCCcCCCCCcCccccceEEecC-Ce-EEEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHhhc
Confidence            3457899999 5  55678999999999998764 45 999999999988 98766 99999999999999999975

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.1e-19  Score=110.05  Aligned_cols=70  Identities=31%  Similarity=0.620  Sum_probs=60.4

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ..+.+.++| .  ....+.|.||||+||++......+|+|+||+||+.. |... |+|||+|++|++||+++|++
T Consensus       168 ~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S~g~~-c~~~-p~vft~v~~~~~WI~~~i~~  240 (240)
T d2qy0b1         168 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CSRG-YGFYTKVLNYVDWIKKEMEE  240 (240)
T ss_dssp             CCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSS-SSSS-CEEEEEGGGGHHHHHHHTTC
T ss_pred             CceecceEEeccCCccceeeccccccceEEEeCCCCeEEEEEEEEECCC-CCCC-CeEEEEHHHHHHHHHHHhcC
Confidence            346789999 6  557789999999999998765556999999999988 8754 99999999999999999874

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.8e-19  Score=111.15  Aligned_cols=72  Identities=36%  Similarity=0.738  Sum_probs=61.7

Q ss_pred             CCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087          5 NDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus         5 ~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      |.......+.++++| +  ..+...|.||+|+||++.      ++|+||+|++.. |.... |.+||+|+.|++||+++|
T Consensus       148 C~~~~~~~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~------~~L~Gi~s~~~~-~~~~~~p~vft~v~~~~~WI~~~i  220 (223)
T d1j16a_         148 CEASSSFIITDNMVCVGFLEGGKDACQGDSGGPVVCN------GELQGIVSWGYG-CALPDNPGVYTKVCNYVDWIQDTI  220 (223)
T ss_dssp             HHSSSSCCCCTTEEEESCTTCSCBCCTTCTTCEEEET------TEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             hhccccceeCCCceEEecCCCCCcccCCccCCcEEEe------eEEEEEEEEccC-CCCCCCCEEEEEhHHhHHHHHHHH
Confidence            455566678899999 6  556789999999999974      459999999998 87766 999999999999999999


Q ss_pred             hhc
Q psy17087         81 AYE   83 (84)
Q Consensus        81 ~~~   83 (84)
                      ++|
T Consensus       221 ~~n  223 (223)
T d1j16a_         221 AAN  223 (223)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            875

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.2e-20  Score=113.87  Aligned_cols=71  Identities=39%  Similarity=0.719  Sum_probs=59.8

Q ss_pred             CCCCCCCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087          5 NDHKGDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         5 ~~~~~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      |...+...+++++|| . ..+.+.|.||+|+||++.      |+|+||+|++...|.... |+|||||+.|.+||+++|.
T Consensus       152 C~~~~~~~~~~~~~C~~~~~~~~~c~gd~G~pl~~~------~~l~Gi~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~  225 (225)
T d1npma_         152 CERAYPGKITEGMVCAGSSNGADTCQGDSGGPLVCD------GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             HHHHSTTTCCTTEEEEECTTCCBCCTTCTTCEEEET------TEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             HhhhccCCcCCCEEEecCCCCCccccCCCCceEEEc------cEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            334455678899999 5 667889999999999984      679999999977687666 9999999999999999874

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=99.77  E-value=1.3e-19  Score=111.53  Aligned_cols=70  Identities=37%  Similarity=0.688  Sum_probs=59.5

Q ss_pred             CCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087          6 DHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         6 ~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ...+...+++.+|| +  ....+.|.||+||||++.      +.|+||+|++.. |.... |.+||||+.|++||+++|+
T Consensus       148 ~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgPl~~~------~~l~Gi~S~g~~-~~~~~~p~v~t~v~~y~~WI~~~i~  220 (222)
T d1hj8a_         148 NNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCN------GELQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLTSTMA  220 (222)
T ss_dssp             HHHSTTCCCTTEEEESCTTSSCBCCTTCTTCEEEET------TEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             hhhcccccccceEEEccCCCCcccccCCcccEEEEC------CEEEEEEEEecC-CCCCCCCEEEEEHHHHHHHHHHHHH
Confidence            34455678899999 6  556789999999999974      459999999998 87766 9999999999999999997


Q ss_pred             h
Q psy17087         82 Y   82 (84)
Q Consensus        82 ~   82 (84)
                      .
T Consensus       221 ~  221 (222)
T d1hj8a_         221 S  221 (222)
T ss_dssp             C
T ss_pred             h
Confidence            5

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=2e-19  Score=110.35  Aligned_cols=72  Identities=36%  Similarity=0.668  Sum_probs=60.5

Q ss_pred             CCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087          5 NDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus         5 ~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      |...+...+.+.++| .  .+..+.|.||+|+||++.      ++|+||+||+.. |.... |++||||++|++||+++|
T Consensus       148 C~~~~~~~~~~~~~c~~~~~~~~~~~~gd~g~pl~~~------~~L~Gi~S~g~~-c~~~~~p~vyt~v~~~~~WI~~~i  220 (223)
T d1hj9a_         148 CKSAYPGQITSNMFCAYGLEGKGDSCQGDSGGPVVCS------GKLQGIVSWGSG-CQAKNKPGVYTKVCNYVSWIKQTI  220 (223)
T ss_dssp             HHHHSTTTCCTTEEECCCCCCCCCCCTTCTTCEEEET------TEEEEEEEECSC-CCCCCCCCEEEEGGGGHHHHHHHH
T ss_pred             HHHHhCCcccccceEEeecCCCcccccCCCCceeEEe------CEEEEEEEEcCC-CCCCCCCEEEEEHHHHHHHHHHHH
Confidence            334455677888899 5  556789999999999975      559999999988 87766 999999999999999999


Q ss_pred             hhc
Q psy17087         81 AYE   83 (84)
Q Consensus        81 ~~~   83 (84)
                      ++|
T Consensus       221 ~~~  223 (223)
T d1hj9a_         221 ASN  223 (223)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            875

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.1e-19  Score=112.52  Aligned_cols=70  Identities=37%  Similarity=0.609  Sum_probs=59.3

Q ss_pred             CCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087          8 KGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus         8 ~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .....+.++++| .  ....+.|.||+|+||++.      ++|+||+|||...|.... |.+||||+.|++||+++|+.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~c~gdsG~pl~~~------~~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i~~n  236 (237)
T d1ao5a_         163 VYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICD------GILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKN  236 (237)
T ss_dssp             HCSSCCCTTEEEEECTTCSCBCCTTCTTCEEEET------TEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHHC
T ss_pred             hhcCCCCCCeEEEccCCCCCcccCCCCCCeeEEc------cEEEEEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHHHhc
Confidence            445567788888 5  556789999999999974      569999999986687766 999999999999999999875

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=108.29  Aligned_cols=70  Identities=40%  Similarity=0.700  Sum_probs=58.9

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ...+..++| .  .+....|.||+||||++... + +|+|+||+||+.. |.... |++||||+.|++||+++|+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~~-~-~~~lvGi~S~g~~-c~~~~~p~vytrv~~~~~WI~~~i~~~  242 (254)
T d2bz6h1         169 PNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR-G-TWYLTGIVSWGQG-CATVGHFGVYTRVSQYIEWLQKLMRSE  242 (254)
T ss_dssp             CCCCTTEEEESCSSSSCBCCGGGTTCEEEEEET-T-EEEEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHTSC
T ss_pred             ccccccceeeeccCCCcccccCccccceEEccC-C-eEEEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHHhhC
Confidence            344566666 3  66788999999999998875 4 4999999999988 87766 999999999999999999864

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8e-20  Score=112.38  Aligned_cols=70  Identities=31%  Similarity=0.551  Sum_probs=58.0

Q ss_pred             CCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhh
Q psy17087          5 NDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         5 ~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      |...+...++++++| .  ....+.|.||+||||++.      ++|+||+|++.. |... |++||||+.|++||+++|+
T Consensus       152 C~~~~~~~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~------~~l~Gi~S~g~~-~~~~-p~vyt~v~~y~~WI~~~i~  223 (224)
T d1t32a1         152 CLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCN------NVAHGIVSYGKS-SGVP-PEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             HHHHSTTCCTTTEEEECCTTSSCBCCTTCTTCEEEET------TEEEEEEEECCT-TCCS-CEEEEEGGGSHHHHHHHHC
T ss_pred             HHhhcCcccccccceeecccccccccccCcCCeEEEc------CEEEEEEEEcCC-CCCC-CcEEEEHHHhHHHHHHHHc
Confidence            344455667889999 4  567889999999999974      459999999987 7654 9999999999999999987


Q ss_pred             h
Q psy17087         82 Y   82 (84)
Q Consensus        82 ~   82 (84)
                      +
T Consensus       224 ~  224 (224)
T d1t32a1         224 S  224 (224)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=8.5e-19  Score=108.24  Aligned_cols=69  Identities=36%  Similarity=0.793  Sum_probs=58.3

Q ss_pred             CCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         10 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        10 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      .....+.++| .  ....+.|.||+|+||++... + +|+|+||+|++.. |.... |++||+|..|++||+++|.
T Consensus       163 ~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~-~-~~~l~Gi~S~g~~-~~~~~~p~v~t~v~~y~~WI~~~i~  235 (235)
T d1ekbb_         163 EYNITENMVCAGYEAGGVDSCQGDSGGPLMCQEN-N-RWLLAGVTSFGYQ-CALPNRPGVYARVPRFTEWIQSFLH  235 (235)
T ss_dssp             TSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEET-T-EEEEEEEEEECSS-SSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ccccCcccEEEEcCCCCcccccCCCCCccEEccC-C-EEEEEEEEEecCC-CCCCCCCEEEEEHHHHHHHHHHhhC
Confidence            3456788899 5  55667899999999999875 4 5999999999998 77766 9999999999999998863

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.5e-19  Score=109.82  Aligned_cols=69  Identities=39%  Similarity=0.766  Sum_probs=58.9

Q ss_pred             CCCCCeec-C-CCCCCCccCCCCcccEEEeCC-CCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         12 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNND-TRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        12 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~-~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      .+++.++| + ..+.+.|.||+||||++...+ ..+|+|+||+|++.. |.  .|.|||||+.|++||+++++++
T Consensus       187 ~~~~~~~~~~~~~~~~~c~gDsGgPl~~~~~~~~~~~~l~Gi~S~~~~-c~--~p~vft~V~~~~~WI~~~i~~~  258 (259)
T d1elva1         187 VFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQ-CG--TYGLYTRVKNYVDWIMKTMQEN  258 (259)
T ss_dssp             CCCTTEEEEECSTTCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSS-TT--SEEEEEEGGGGHHHHHHHHHHT
T ss_pred             eeecceeeccCCCCCccCCCCcCCeEEEEecCCCcEEEEEEEEEeCCC-CC--CceEEeEHHHHHHHHHHHHHhc
Confidence            46788888 5 677889999999999987542 345999999999987 85  3899999999999999999876

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=99.76  E-value=8.8e-19  Score=108.55  Aligned_cols=68  Identities=38%  Similarity=0.712  Sum_probs=57.8

Q ss_pred             CCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087         10 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus        10 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      ...+.+.++| .  ....+.|++|+|+||++... +. |+|+||+|++.. |.... |.+||+|+.|++||++++
T Consensus       165 ~~~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~~-~~-~~L~Gi~S~g~~-c~~~~~p~v~t~v~~y~~WI~~n~  236 (237)
T d2f91a1         165 ADEILDSMICAGVPEGGKDSCQGDSGGPLAASDT-GS-TYLAGIVSWGYG-CARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             TTTSCTTEEEECCTTCCCBCCTTCTTCEEEECTT-SS-CEEEEEEEEESS-SSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             CCcccCceeEeecCCCccccccCCCCCeEEEecC-Ce-EEEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHhC
Confidence            3456788899 5  55678999999999999754 44 999999999988 88776 999999999999999864

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=99.76  E-value=2.6e-19  Score=110.40  Aligned_cols=73  Identities=38%  Similarity=0.691  Sum_probs=61.0

Q ss_pred             CCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHh
Q psy17087          5 NDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus         5 ~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      |...+...+++.++| +  ......|.+|+|+||++.      ++|+||+|++.. |.... |.+||+|++|++||++++
T Consensus       152 C~~~~~~~~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~------~~l~Gi~s~g~~-~~~~~~p~vft~v~~~~~WI~~~i  224 (228)
T d1fxya_         152 CEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCN------GQLQGVVSWGDG-CAQKNKPGVYTKVYNYVKWIKNTI  224 (228)
T ss_dssp             HHHHSTTTCCTTEEEESCTTCSCBCCTTCTTCEEEET------TEEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHHHH
T ss_pred             HhhhcCCcccceeeEeecCCCCcccccCccCccEEEe------CEEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHH
Confidence            334455567788888 5  667889999999999985      559999999988 77656 999999999999999999


Q ss_pred             hhcC
Q psy17087         81 AYEV   84 (84)
Q Consensus        81 ~~~~   84 (84)
                      +++.
T Consensus       225 ~~~~  228 (228)
T d1fxya_         225 AANS  228 (228)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            9863

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.7e-19  Score=109.42  Aligned_cols=68  Identities=44%  Similarity=0.745  Sum_probs=58.6

Q ss_pred             CCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+...++| +......|.+|+|+||++..+ +. |+|+||+|++.. |.... |.|||||+.|++||++++++
T Consensus       174 ~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~-~~-~~L~Gi~s~~~~-~~~~~~p~v~t~v~~y~~WI~~~i~~  243 (243)
T d2fpza1         174 IVRDDMLCAGNTRRDSCQGDSGGPLVCKVN-GT-WLQAGVVSWGEG-CAQPNRPGIYTRVTYYLDWIHHYVPK  243 (243)
T ss_dssp             SSCTTEEEECCSSSBCCTTCTTCEEEEEET-TE-EEEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHTTTSCC
T ss_pred             eeeeeeEecCCCCCCCccCCCCCeEEEeeC-CE-EEEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHhCC
Confidence            34566777 777889999999999998875 44 999999999988 87666 99999999999999999874

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.4e-19  Score=108.69  Aligned_cols=66  Identities=39%  Similarity=0.706  Sum_probs=55.8

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEecc-ccHHHHHHHhhhc
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRIT-AYLPWIIARMAYE   83 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~-~~~~WI~~~~~~~   83 (84)
                      ....+.++| +  .+..+.|.|||||||++.      ++|+||+|++.. |.... |+|||||+ +|++||+++|++.
T Consensus       167 ~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~------~~l~Gi~S~g~~-c~~~~~p~vftrvs~~y~~WI~~~i~~~  237 (240)
T d1mzaa_         167 PFITKDMVCAGDAKGQKDSCKGDAGGPLICK------GVFHAIVSGGHE-CGVATKPGIYTLLTKKYQTWIKSNLVPP  237 (240)
T ss_dssp             TCCCTTEEEEECTTSCCCCCTTCTTCEEEET------TEEEEEECSSCC-SSCTTCCEEEEECCHHHHHHHHHHTCCS
T ss_pred             cccccceEEeccCCCCccCccCCCCCeEEEC------CEEEEEEEeCCC-CCCCCCCeEEEEEHHHHHHHHHHHccCC
Confidence            345688888 5  556789999999999974      469999999987 98766 99999997 6899999999853

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.7e-18  Score=106.12  Aligned_cols=67  Identities=39%  Similarity=0.772  Sum_probs=55.7

Q ss_pred             CCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         13 VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        13 i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .....+| .  ....+.|.||+|+||++..+ +. |+|+||+|++.. |.... |++||||+.|++||++++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~gd~G~pl~~~~~-~~-~~l~Gi~s~g~~-c~~~~~p~vftrv~~y~~WI~~~i~~  240 (240)
T d1autc_         170 VSENMLCAGILGDRQDACEGDSGGPMVASFH-GT-WFLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWIHGHIRD  240 (240)
T ss_dssp             CCTTEEEECCTTCCCBCCTTCTTCEEEEEET-TE-EEEEEEEEECSS-SSCTTCCEEEECGGGTHHHHHHHHC-
T ss_pred             cccceeeeccccccCCCcCCccCceeEEcCC-CC-EEEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHHHhCC
Confidence            3444555 3  56778999999999999875 44 999999999987 87666 99999999999999999975

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.6e-19  Score=110.30  Aligned_cols=74  Identities=32%  Similarity=0.648  Sum_probs=60.6

Q ss_pred             CCCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHH
Q psy17087          4 PNDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   79 (84)
Q Consensus         4 ~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~   79 (84)
                      .|.........+.++| +  .++...|.+|+|+||++.      ++|+||+|||...|.... |+|||+|+.|++||+++
T Consensus       150 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~pl~~~------~~l~Gv~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~  223 (228)
T d1sgfa_         150 DCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICD------GILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRET  223 (228)
T ss_dssp             HHHTTCSSBCCTTEEEEEECSSSEEECCCCTTCEEEET------TEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHH
T ss_pred             HhhhhccCCcccceEEeccCCCCccccCCCcCCcEEEe------CEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence            3445555566778888 5  556788999999999974      569999999876587666 99999999999999999


Q ss_pred             hhhc
Q psy17087         80 MAYE   83 (84)
Q Consensus        80 ~~~~   83 (84)
                      |+++
T Consensus       224 i~~n  227 (228)
T d1sgfa_         224 MANN  227 (228)
T ss_dssp             HHSC
T ss_pred             HhHC
Confidence            9875

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-18  Score=106.45  Aligned_cols=68  Identities=34%  Similarity=0.620  Sum_probs=56.2

Q ss_pred             CCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC-CCCCCC-CcEEEecc-ccHHHHHHHhhh
Q psy17087          9 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGS-PGIYTRIT-AYLPWIIARMAY   82 (84)
Q Consensus         9 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~-~C~~~~-p~v~t~v~-~~~~WI~~~~~~   82 (84)
                      ....++++++| +  ....+.|.||+|+||++.      ++|+||+||+.. .|.... |+|||||+ .|++||+++|+.
T Consensus       159 ~~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~------~~l~GI~S~g~~~~c~~~~~p~vyt~Vs~~y~~WI~~~i~g  232 (232)
T d1orfa_         159 FNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE------GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKG  232 (232)
T ss_dssp             TTTCCCTTEEEEECSSCCCBCCTTCTTCEEEET------TEEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHCC
T ss_pred             cCccccCceEEeccCCCCcccccccCCCeEEEc------CEEEEEEEEECCCCCCCCCCCcEEEEeeHHHHHHHHHHhCC
Confidence            34567899999 5  556789999999999985      459999999853 387766 99999997 699999999863

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=99.74  E-value=1.5e-18  Score=106.25  Aligned_cols=65  Identities=40%  Similarity=0.906  Sum_probs=56.1

Q ss_pred             CCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         11 ISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        11 ~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ..+.+.++| + ....+.|++|+|+||++.      |+|+||+|++.. |....|.|||||+.|++||++++++
T Consensus       156 ~~~~~~~~c~~~~~~~~~c~~d~G~pl~~~------~~L~GI~s~~~~-c~~~~p~vyt~v~~y~~WI~~~i~~  222 (222)
T d1eq9a_         156 WRVIDSHICTLTKRGEGACHGDSGGPLVAN------GAQIGIVSFGSP-CALGEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             SSCCTTEEEECCCTTCBCCTTCTTCEEEET------TEEEEEEEECST-TTSSSCEEEEEGGGGHHHHHHTSCC
T ss_pred             ccccCcceEeccCCCCCccccCCcCCEEEc------CEEEEEEEECCC-CCCCCCcEEEEHHHHHHHHHHHhcC
Confidence            345788899 6 667789999999999974      569999999987 9876699999999999999999864

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.74  E-value=2.9e-18  Score=105.84  Aligned_cols=60  Identities=35%  Similarity=0.722  Sum_probs=52.3

Q ss_pred             CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhh
Q psy17087         21 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        21 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ....+.|.+|+|+||++.... .+|+|+||+||+.. |.... |+|||||+.|.+||+++++.
T Consensus       162 ~~~~~~c~~~~G~pl~~~~~~-~~~~L~Gi~s~~~~-c~~~~~p~vft~V~~y~~WI~~~~k~  222 (223)
T d1os8a_         162 TGGVDTCQGDSGGPMFRKDNA-DEWIQVGIVSWGYG-CARPGYPGVYTEVSTFASAIASAART  222 (223)
T ss_dssp             TCCCBCCTTCTTCEEEEECTT-SCEEEEEEEEECSS-SSCTTCCEEEEEHHHHHHHHHHHHHT
T ss_pred             cCCcCccccccccceEEecCC-CeEEEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHHhh
Confidence            456788999999999988663 45999999999988 87766 99999999999999999863

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-18  Score=107.21  Aligned_cols=64  Identities=33%  Similarity=0.558  Sum_probs=50.7

Q ss_pred             CCCCCeec--C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhhc
Q psy17087         12 SVTETKFL--V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        12 ~i~~~~~C--~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ......+|  . ....+.|.||+|+||++.      |+|+||+|++.. |.. .|.+||||+.|++||+++|++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~c~gDsG~PL~~~------~~l~GI~s~g~~-~~~-~p~vyt~v~~y~~WI~~~i~~n  224 (224)
T d1nn6a_         158 FDHNLQLCVGNPRKTKSAFKGDSGGPLLCA------GVAQGIVSYGRS-DAK-PPAVFTRISHYRPWINQILQAN  224 (224)
T ss_dssp             CCTTTEEEECCTTTC--CCCCCTTCEEEET------TEEEEEEEECCT-TCC-SCEEEEEHHHHHHHHHHHHHTC
T ss_pred             cccceeeeccCccccccccCCCccceEEEC------CEEEEEEEECCC-CCC-CCeEEEEHHHHHHHHHHHHhcC
Confidence            34555666  3 556779999999999974      569999999976 553 3999999999999999999875

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.73  E-value=7.1e-19  Score=108.59  Aligned_cols=75  Identities=23%  Similarity=0.348  Sum_probs=62.8

Q ss_pred             CCCCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHH
Q psy17087          3 HPNDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   78 (84)
Q Consensus         3 ~~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~   78 (84)
                      +.|...+...+.+.++| .  ......|.||+|+||++.      ++|+||+||+...|.... |.+||||+.|++||++
T Consensus       158 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~------~~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~WI~~  231 (237)
T d1gvza_         158 EKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALICD------GVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKE  231 (237)
T ss_dssp             GGGCSSCGGGCCTTEEEEECSSTTCEECGGGTTCEEEET------TEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHH
T ss_pred             HHHHhhcccccccccccceecccccccccCCCCCcEEEc------CEEEEEEEeccCCCCCCCCCeEEEEHHHHHHHHHH
Confidence            45666666777777777 4  567789999999999985      469999999987687666 9999999999999999


Q ss_pred             Hhhhc
Q psy17087         79 RMAYE   83 (84)
Q Consensus        79 ~~~~~   83 (84)
                      +|+++
T Consensus       232 ~i~~~  236 (237)
T d1gvza_         232 TIEKN  236 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99876

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=99.72  E-value=1.3e-17  Score=102.57  Aligned_cols=67  Identities=34%  Similarity=0.674  Sum_probs=54.5

Q ss_pred             CCCCCeec-CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC-CCCCCC-CcEEEeccccHHHHHHHh
Q psy17087         12 SVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGS-PGIYTRITAYLPWIIARM   80 (84)
Q Consensus        12 ~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~-~C~~~~-p~v~t~v~~~~~WI~~~~   80 (84)
                      .....++| .......|.+|+||||++..+ +. |+|+||+||+.. .|.... |+|||||+.|++||++++
T Consensus       167 ~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~-~~-~~l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~~vi  236 (236)
T d1elta_         167 TVKTTMVCAGGGANSGCNGDSGGPLNCQVN-GS-YYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             GSCTTEEEECCSSCBCCTTCTTCEEEEEET-TE-EEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             ccceeeeecCCccccccccccccceEEEEC-Ce-EEEEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            34455566 566678899999999999875 44 999999999653 287766 999999999999999975

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.5e-18  Score=105.68  Aligned_cols=70  Identities=43%  Similarity=0.752  Sum_probs=56.3

Q ss_pred             CCCCCCCCCCCeec--C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087          6 DHKGDISVTETKFL--V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         6 ~~~~~~~i~~~~~C--~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      .+.+...+.++++|  . ..+...|.||+|+||++.   +   +|+||+|||...|.... |+|||||+.|++||+++|+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~c~gd~G~Pl~~~---~---~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         148 EHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCG---D---HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             HHHSTTTCCTTEEEEECTTTCCBCCTTTTTCEEEET---T---EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             HHHcCCCccCCceeeeccccCCCCccCCCCCcEEEC---C---EEEEEEEEccCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            33444555566666  3 667888999999999975   3   49999999886687666 9999999999999999985

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=99.72  E-value=6.1e-18  Score=103.84  Aligned_cols=62  Identities=40%  Similarity=0.691  Sum_probs=52.2

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHH
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   79 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~   79 (84)
                      .+.+.++| .  ..+.+.|++|+||||++.    . |+|+||+||+.. |.... |+|||||+.|++||++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~c~~dsG~pl~~~----~-~~l~GI~S~g~~-c~~~~~p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         158 AITNQMFCAGVSSGGKDSCQGDSGGPIVDS----S-NTLIGAVSWGNG-CARPNYSGVYASVGALRSFIDTY  223 (224)
T ss_dssp             TSCTTEEEECCTTCCCBCCTTCTTCEEECT----T-CCEEEEEEECSS-SSCTTCCEEEEETTTTHHHHHHH
T ss_pred             ccccceeeeecCCCCccccccccCCceEec----C-CEEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHC
Confidence            45667777 5  567789999999999852    3 679999999998 88777 99999999999999874

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=99.71  E-value=1.1e-17  Score=103.12  Aligned_cols=71  Identities=34%  Similarity=0.636  Sum_probs=57.1

Q ss_pred             CCCCCCCCCeec-C-CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCC-CCCCCCcEEEeccccHHHHHHHhhh
Q psy17087          8 KGDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus         8 ~~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~-C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .......+.++| . ....+.|.||+|+||++.   +. |+|+||+||+... |....|.+||+|++|++||+++|+-
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~gdsGgp~~~~---~~-~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~~~~  228 (230)
T d2hlca_         155 YPPGIIVESTICGDTSDGKSPCFGDSGGPFVLS---DK-NLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGI  228 (230)
T ss_dssp             SCTTSSCTTEEEECCTTSCBCCTTCTTCEEEEG---GG-TEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHCC
T ss_pred             cccccccccceEeccccCccccccccCCCeEEC---CC-eEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhCC
Confidence            334455677888 5 667889999999999986   44 8999999998753 3443499999999999999999864

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7e-18  Score=103.05  Aligned_cols=62  Identities=24%  Similarity=0.536  Sum_probs=51.6

Q ss_pred             CCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         14 TETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        14 ~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ...+.| .  ....+.|.||+|+||++.      ++|+||+||+...|.... |+|||+|+.|++||+++++
T Consensus       153 ~~~~~~~~~~~~~~~~C~gdsG~Pl~~~------~~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         153 RRSNVCTLVRGRQAGVCFGDSGSPLVCN------GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             CTTSEEEECTTSCCBCCTTCTTCEEEET------TEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ceeeeeeeecCcccCccccccCCCEEEC------CEEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHhC
Confidence            345566 3  455678999999999985      459999999866588777 9999999999999999985

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.1e-17  Score=102.90  Aligned_cols=63  Identities=35%  Similarity=0.585  Sum_probs=52.3

Q ss_pred             CCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         12 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        12 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ...+..+| +  ......|.||+||||++.      ++|+||+|++.. |.. .|.+||+|+.|++||+++|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~------~~l~Gi~S~g~~-~~~-~p~vyt~v~~y~~WI~~~i~~  227 (227)
T d1fi8a_         162 FDKANEICAGDPKIKRASFRGDSGGPLVCK------KVAAGIVSYGQN-DGS-TPRAFTKVSTFLSWIKKTMKK  227 (227)
T ss_dssp             CCTTTEEEESCTTSCCBCCTTCTTSEEEET------TEEEEEEEEEET-TCC-SCEEEEEGGGGHHHHHHHHCC
T ss_pred             cccceeeeeeeccccCCCcCCCcCCEEEEC------CEEEEEEEEcCC-CCC-CCeEEEEHHHHHHHHHHHHcC
Confidence            44566667 5  556788999999999974      569999999987 753 399999999999999999874

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-17  Score=101.72  Aligned_cols=64  Identities=42%  Similarity=0.810  Sum_probs=53.0

Q ss_pred             CCCCCeec--CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         12 SVTETKFL--VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        12 ~i~~~~~C--~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ......+|  ...+.+.|.||+|+||++.      |+|+||+|++...|.... |++||||+.|++||+++|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~gdsG~Pl~~~------~~LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~i~  228 (228)
T d1bioa_         162 GAITERLMCAESNRRDSCKGDSGGPLVCG------GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TCCCTTEEEECCSSCBCCTTTTTCEEEET------TEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             ccccccceeecccCCCcccCCcCccEEEc------CEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            33444555  4777889999999999974      569999999877687766 9999999999999999873

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=1.1e-17  Score=102.83  Aligned_cols=69  Identities=38%  Similarity=0.584  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhh
Q psy17087          5 NDHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus         5 ~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      |...........++| .  ......|.+|+||||++.      ++|+||+|++.. |.. .|.+||||+.|++||+++|+
T Consensus       153 C~~~~~~~~~~~~~~~~~~~~~~~~c~~dsGgpl~~~------~~l~Gi~s~g~~-~~~-~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         153 CIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPLVCN------GVAQGIVSYGRN-DGT-TPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             HHTTCTTCCTTTEEEESCTTSCCBCCTTCTTCEEEET------TEEEEEEEECCT-TCC-SCEEEEEGGGTHHHHHHHTC
T ss_pred             HHHHhccccccceeeeeccccccccccCCCCCeEEEc------CEEEEEEEEcCC-CCC-CCeEEEEHHHHHHHHHHHhC
Confidence            334444445555555 4  667889999999999974      469999999987 753 39999999999999999985

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=99.68  E-value=9.2e-18  Score=103.37  Aligned_cols=61  Identities=36%  Similarity=0.762  Sum_probs=49.8

Q ss_pred             CCeec--CCCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCC-CCC-CcEEEeccccHHHHHHHhhh
Q psy17087         15 ETKFL--VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGS-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        15 ~~~~C--~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~-~~~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      +.++|  .....+.|.+|+|+||++.      ++|+||+|++.. |. ... |+|||||+.|++||+++++-
T Consensus       160 ~~~~~~~~~~~~~~c~gdsG~Pl~~~------~~l~Gi~S~g~~-~~~~~~~p~v~t~v~~y~~WI~~~~g~  224 (226)
T d1azza_         160 DGNICIDSTGGKGTCNGDSGGPLNYN------GLTYGITSFGAA-AGCEAGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             TTEEEECCTTTCBCCTTCTTCEEEET------TEEEEEEEEEET-TCTTSCCCEEEEESGGGHHHHHHHHCC
T ss_pred             ccceeccccCCCccccCCcCCCEEEc------CEEEEEEEEeCC-CCCCCCCCEEEEEHHHhHHHHHHHhCC
Confidence            34444  5777889999999999874      569999999887 43 344 99999999999999999863

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=99.68  E-value=2e-17  Score=102.14  Aligned_cols=63  Identities=44%  Similarity=0.851  Sum_probs=53.2

Q ss_pred             CCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhhhc
Q psy17087         15 ETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   83 (84)
Q Consensus        15 ~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~~~   83 (84)
                      ..++| .  ....+.|.||+|+||++.      ++|+||+||+...|.... |.|||||+.|++||+++|+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~G~Pl~~~------~~l~Gi~S~g~~~c~~~~~p~vft~v~~y~~WI~~~i~~~  227 (234)
T d1op0a_         161 YRTLCAGIVQGGKDTCGGDSGGPLICN------GQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGN  227 (234)
T ss_dssp             SCEEEEECTTCCCBCCTTCTTCEEEET------TEEEEEEEECCSSTTCTTSCEEEEESGGGHHHHHHHHHTC
T ss_pred             eeeeeecccccccccccCCCCceEEEc------CEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhhc
Confidence            44455 3  567889999999999974      459999999876688777 999999999999999999875

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.66  E-value=8.7e-17  Score=98.92  Aligned_cols=63  Identities=35%  Similarity=0.600  Sum_probs=51.9

Q ss_pred             CCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhh
Q psy17087         11 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        11 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~   81 (84)
                      ......++| .  ......|.+|+||||++.      ++|+||+||+.. |.. .|.|||+|++|++||+++|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~------~~l~Gi~S~g~~-~~~-~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         159 YYEYKFQVCVGSPTTLRAAFMGDSGGPLLCA------GVAHGIVSYGHP-DAK-PPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             CCCTTTEEEECCTTSCCBCCTTTTTCEEEET------TEEEEEEEECCT-TCC-SCEEEEEHHHHHHHHHHHHC
T ss_pred             cccccceeeeccCcccccCcCCCcCCeEEEc------CEEEEEEEECCC-CCC-CCeEEEEHHHHHHHHHHHhC
Confidence            345667777 4  566788999999999984      569999999976 653 39999999999999999874

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.2e-16  Score=96.47  Aligned_cols=55  Identities=31%  Similarity=0.634  Sum_probs=48.4

Q ss_pred             CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHHHhh
Q psy17087         21 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        21 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~~~~   81 (84)
                      ..+.+.|.||+||||++.      ++|+||+||+...|.... |.|||||+.|++||+++|+
T Consensus       166 ~~~~~~c~gd~G~pl~~~------~~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         166 RRKAGICFGDSGGPLICD------GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             SSSCBCCTTCTTCEEEET------TEEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             cCCCceeCCccCCCEEEe------CEEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            667889999999999975      459999999875587666 9999999999999999985

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.4e-16  Score=95.01  Aligned_cols=55  Identities=31%  Similarity=0.634  Sum_probs=47.5

Q ss_pred             CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         21 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        21 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ....+.|.||+|+||++.      |+|+||+||+...|.. .|.+||||+.|++||++++++
T Consensus       165 ~~~~~~c~gdsG~Pl~~~------~~l~Gi~S~~~~~c~~-~p~v~t~v~~y~~WI~~~i~~  219 (225)
T d1a7sa_         165 TRRGGICNGDGGTPLVCE------GLAHGVASFSLGPCGR-GPDFFTRVALFRDWIDGVLNN  219 (225)
T ss_dssp             SSSCBCCTTCTTCEEEET------TEEEEEEEEECSSTTS-SCEEEEEGGGGHHHHHHHHHS
T ss_pred             ccccccccCCCCCCEEEe------CEEEEEEEECCCCCCC-CCCEEEEHHHHHHHHHHHHCC
Confidence            557789999999999984      5699999999874643 499999999999999999974

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=99.56  E-value=1e-14  Score=89.50  Aligned_cols=64  Identities=31%  Similarity=0.626  Sum_probs=49.2

Q ss_pred             CCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC---CCCCCC-CcEEEeccccHHHHHHH
Q psy17087         13 VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP---ECGIGS-PGIYTRITAYLPWIIAR   79 (84)
Q Consensus        13 i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~---~C~~~~-p~v~t~v~~~~~WI~~~   79 (84)
                      ..+..+| +  ....+.|.||+||||++..  +. ++|+||+|+...   .|.... |+|||||+.|++||+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~g~sGgpl~~~~--~~-~~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~~WI~~n  240 (241)
T d1m9ua_         170 IWDNHICVQDPAGNTGACNGDSGGPLNCPD--GG-TRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN  240 (241)
T ss_dssp             CCTTEEEECCTTSCCBCCTTCTTCEEEEES--SS-EEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHHH
T ss_pred             cccceeEeecccCCcCcccCCCCcceEEec--CC-EEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHc
Confidence            3455555 4  5567899999999999874  33 789999987532   144445 99999999999999975

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.5e-16  Score=95.21  Aligned_cols=54  Identities=39%  Similarity=0.675  Sum_probs=47.1

Q ss_pred             CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         21 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        21 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ....+.|++|+|+||++.      ++|+||+|++.. |... |.|||||+.|++||+++|+.
T Consensus       173 ~~~~~~~~gdsG~pl~~~------~~l~GI~s~g~~-~~~~-p~vyt~v~~y~~WI~~~i~~  226 (227)
T d1fq3a_         173 EIKKTSFKGDSGGPLVCN------KVAQGIVSYGRN-NGMP-PRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             TSSCBCCTTCTTCBCBSS------SSCCCEECCCCT-TSCS-CCCEECHHHHHHHHHHHTTC
T ss_pred             ccccccccCCCCceEEEe------CEEEEEEEEcCC-CCCC-CcEEEEHHHHHHHHHHHHHh
Confidence            567889999999999974      459999999987 7643 99999999999999999874

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.37  E-value=8.9e-14  Score=87.41  Aligned_cols=65  Identities=20%  Similarity=0.225  Sum_probs=48.1

Q ss_pred             CCCCCCCCCeec-C--CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCC---CCCCCcEEEeccccHHHHH
Q psy17087          8 KGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPEC---GIGSPGIYTRITAYLPWII   77 (84)
Q Consensus         8 ~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C---~~~~p~v~t~v~~~~~WI~   77 (84)
                      .+...+...++| .  ....+.|+|||||||++..  +.   ++|++|++...|   ....|++||||+.|..||.
T Consensus       168 ~~~~~~~~~~~c~~~~~~~~~~c~GDSGGPL~~~~--g~---~vGvvsgg~s~c~~c~~~~p~vYtrV~~~~~~~~  238 (263)
T d1arba_         168 AWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPE--KR---VLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGG  238 (263)
T ss_dssp             CTTSSSCSSEEEEECCTTSCCCCTTCTTCEEECTT--SC---EEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTTS
T ss_pred             ccCCCCCccEEEEEecCCCccccCCCCcceEEecC--CC---EEEEEEEEEeCCcCCCCCCCceEEEEEEeeccCC
Confidence            345566788999 5  5567899999999998642  45   889999886444   4434999999998755553

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=98.95  E-value=3e-10  Score=67.05  Aligned_cols=49  Identities=24%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHH
Q psy17087         21 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI   76 (84)
Q Consensus        21 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI   76 (84)
                      ......|.|||||||+..   +.   ++||+|++.. |.... +.+|++|..++++.
T Consensus       133 ~~~~~~~~GDSGgPl~~~---~~---~vGi~s~g~~-~~~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         133 RTTACSAGGDSGGAHFAG---SV---ALGIHSGSSG-CSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EECCCCCTTCTTCEEEET---TE---EEEEEEEESC-CBTTBCCCEEEEHHHHHHHH
T ss_pred             EcCcccccCCCCCeEEEC---CE---EEEEEEEEec-CCCCCCCEEEEEHHHHHHHh
Confidence            556788999999999974   55   9999999988 55444 99999999888764

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=98.93  E-value=1.7e-11  Score=74.12  Aligned_cols=53  Identities=17%  Similarity=0.367  Sum_probs=41.6

Q ss_pred             CCCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC-CcEEEeccccHHHHHH
Q psy17087         21 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   78 (84)
Q Consensus        21 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~-p~v~t~v~~~~~WI~~   78 (84)
                      ....+.|.|||||||+..    . +.|+||.|++...+.... |.+|++|.+|++||++
T Consensus       161 ~~~~~~~~G~SGgPl~~~----~-~~lvGi~s~g~~~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         161 YYTIDTFSGNSGSAMLDQ----N-QQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             EECCCCCTTCTTCEEECT----T-SCEEEECCEEEGGGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             eeecccCCCCccCeEECC----C-CEEEEEEEeccCCCCCCCCeEEEeEHHHHHHHHHc
Confidence            335578999999999832    2 459999999887333334 8899999999999985

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=97.93  E-value=1.6e-06  Score=51.24  Aligned_cols=45  Identities=33%  Similarity=0.524  Sum_probs=34.1

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHH
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI   76 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI   76 (84)
                      ..+|||||||+..   +.   ++||++.+...|.......|+.|..+++++
T Consensus       132 ~~~GdSGGPv~~~---~~---~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         132 AQPGDSGGSLFAG---ST---ALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             CCTTCTTCEEEET---TE---EEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             ccCCCcCCeeEEC---CE---EEEEEEEecCCCCCCceEEEEEHHHHHHHh
Confidence            4589999999963   55   999999987634443378999988777654

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.91  E-value=3.3e-06  Score=50.54  Aligned_cols=51  Identities=16%  Similarity=0.339  Sum_probs=35.0

Q ss_pred             CCCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHHhhh
Q psy17087         24 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        24 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~~~~   82 (84)
                      .+.|.|+|||||+-  ..+.   ++||.+++.. +.. ..+++.. ....+||++.++.
T Consensus       162 ~~~~~G~SGgPv~~--~~g~---vVGI~s~g~~-~~~-~~~v~~~-~~~~~~i~~~i~~  212 (216)
T d2o8la1         162 LSTTGGNSGSPVFN--EKNE---VIGIHWGGVP-NEF-NGAVFIN-ENVRNFLKQNIED  212 (216)
T ss_dssp             CCCCTTCTTCEEEC--TTSC---EEEEEEEEET-TTE-EEEEECC-HHHHHHHHHHCTT
T ss_pred             cCcCCCCCCCcEEC--CCCE---EEEEEeeecC-CCC-cceEecC-HHHHHHHHHhhhh
Confidence            45699999999983  2255   9999998865 221 1333322 4577999998864

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.09  E-value=0.00036  Score=42.18  Aligned_cols=49  Identities=14%  Similarity=0.073  Sum_probs=30.5

Q ss_pred             CCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC--CcEEEeccccHHHHHHHhhh
Q psy17087         25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS--PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        25 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~--p~v~t~v~~~~~WI~~~~~~   82 (84)
                      +.+.|+|||||+-  .++.   |+||.+.+.. +....  ...-+.+   .++|++.+++
T Consensus       189 ~~~~G~SGgPl~~--~~g~---vVGI~~~~~~-~~~~~~~~~~av~i---~~~i~~~i~~  239 (242)
T d1agja_         189 FTVPGNSGSGIFN--SNGE---LVGIHSSKVS-HLDREHQINYGVGI---GNYVKRIINE  239 (242)
T ss_dssp             CCCGGGTTCEEEC--TTSE---EEEEEEEEEE-CSSTTCEEEEEEEC---CHHHHHHHHH
T ss_pred             ccCCccCCCcEEC--CCCe---EEEEEeEeec-CCCCccceEEEEeC---HHHHHHHHHH
Confidence            4678999999983  2255   9999998865 33222  2222333   3666666653

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=96.98  E-value=6.1e-05  Score=44.40  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=23.3

Q ss_pred             CCCCCccCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         22 PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        22 ~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      .....+.||||||++..  +++   ++||+|.+..
T Consensus       134 ~~~~~~~GdSGGPv~~~--~g~---vvGI~sgg~~  163 (198)
T d2h5ca1         134 GNACMGRGDSGGSWITS--AGQ---AQGVMSGGNV  163 (198)
T ss_dssp             ECSCCBTTCTTCEEECT--TCB---EEEEEEEECC
T ss_pred             EeeeeecccccccEEcC--CCE---EEEEEccccc
Confidence            34556899999999853  266   9999998765

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=96.37  E-value=0.00072  Score=39.46  Aligned_cols=39  Identities=44%  Similarity=0.710  Sum_probs=26.7

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEecc
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRIT   70 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~   70 (84)
                      ...|||||||+..   +.   ++||++.+...+.......|+-|.
T Consensus       136 ~~~GdSGGPv~~~---~~---~vGi~~~g~~~~~~~~~~~~~Pi~  174 (185)
T d2qaaa1         136 AEPGDSGGPLYSG---TR---AIGLTSGGSGNCSSGGTTFFQPVT  174 (185)
T ss_dssp             CCTTCTTCEEEET---TE---EEEEEEEEEEETTTEEEEEEEEHH
T ss_pred             ecCCcccceeEEC---CE---EEEEEEEeecCCCCCceEEEEEHH
Confidence            4479999999953   55   999999887523322255666653

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=95.06  E-value=0.014  Score=35.05  Aligned_cols=48  Identities=17%  Similarity=0.398  Sum_probs=33.5

Q ss_pred             CCccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccc-cHHHHHHH
Q psy17087         25 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITA-YLPWIIAR   79 (84)
Q Consensus        25 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~-~~~WI~~~   79 (84)
                      .+-.|+|||||+-..+ |.   ++||.+++..   ...-..|+-|.. +.++|.+.
T Consensus       143 ~t~~GnSGGPlvd~~d-G~---VVGIhs~~~~---~~~~n~~~~i~~~~~~~l~~~  191 (219)
T d1lvmb_         143 QTKDGQCGSPLVSTRD-GF---IVGIHSASNF---TNTNNYFTSVPKNFMELLTNQ  191 (219)
T ss_dssp             CCCTTCTTCEEEETTT-CC---EEEEEEEEET---TSSSEEEEECCTTHHHHHHCG
T ss_pred             EcCCCCCCCceEEcCC-CE---EEEEEEeeec---ccceEEEEecCHHHHHHHhhc
Confidence            3467999999996433 77   9999998764   112456777744 77777654

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.64  E-value=0.011  Score=35.37  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=18.9

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      =.|+|||||+-.  .|.   ++||.+....
T Consensus       179 ~~G~SGGPl~n~--~G~---VIGI~~~~~~  203 (228)
T d1l1ja_         179 NPGNSGGPLLNI--HGE---VIGINTAIVN  203 (228)
T ss_dssp             CTTTTTSEEECS--SSE---EEEEECCCSC
T ss_pred             CCCCCCCcEECC--CCE---EEEEEEEEec
Confidence            358999999843  267   9999986543

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.041  Score=32.19  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=19.3

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      =.|.|||||+-.  .|.   ++||++....
T Consensus       155 ~~G~SGGPv~n~--~G~---vVGI~~~~~~  179 (210)
T d2qf3a1         155 NHGNSGGALVNS--LGE---LMGINTLSFD  179 (210)
T ss_dssp             CTTCTTCEEEET--TCC---EEEEEEEEC-
T ss_pred             EeccCCCceEee--cCE---EEEEEEEEee
Confidence            358999999854  278   9999998754

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.046  Score=33.13  Aligned_cols=49  Identities=20%  Similarity=0.178  Sum_probs=30.0

Q ss_pred             ccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC--CcEEEeccccHHHHHHHhh
Q psy17087         27 CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS--PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        27 C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~--p~v~t~v~~~~~WI~~~~~   81 (84)
                      =.|.|||||+-.  .|+   |+||.+.... -....  .+.-.-+....+++++.++
T Consensus       196 ~~GnSGGPl~n~--~G~---vIGI~t~~~~-~~~~~~gi~faIP~~~~~~~~~~l~~  246 (249)
T d1ky9a2         196 NRGNAGGALVNL--NGE---LIGINTAILA-PDGGNIGIGFAIPSNMVKNLTSQMVE  246 (249)
T ss_dssp             TTSCCCSEEECT--TSC---EEEEEECSST-TSCCCSSSEEEEEHHHHHHHHHHHHH
T ss_pred             cCCCCCceEECC--CCE---EEEEEEEEec-cCCCcccEEEEEEHHHHHHHHHHHHH
Confidence            468999999843  278   9999987654 22111  3333444555566666554

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.10  E-value=0.032  Score=33.58  Aligned_cols=52  Identities=15%  Similarity=0.152  Sum_probs=32.1

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCC-------C-CcEEEeccccHHHHHHHhhh
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-------S-PGIYTRITAYLPWIIARMAY   82 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~-------~-p~v~t~v~~~~~WI~~~~~~   82 (84)
                      ...|+|||||+-  .++.   ||||.+.+.+.....       . -.++.....+.+||.+.+++
T Consensus       181 ~~~G~SGgPv~n--~~G~---vVGI~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (246)
T d1qtfa_         181 TEVGNSGSGIFN--LKGE---LIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDTLGNDLKK  240 (246)
T ss_dssp             CCGGGTTCEEEC--TTCC---EEEEEEEEETTTTEEEEEETTCBCCTTTSTTCCSSCBHHHHHHH
T ss_pred             ccCCCCCCcEEC--CCCe---EEEEEecccCCCCCccceEeecccchhhhhhHHHHHHHHHHhhh
Confidence            457999999983  2366   999998766533211       0 12334445566777666654

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.036  Score=32.34  Aligned_cols=24  Identities=38%  Similarity=0.634  Sum_probs=18.8

Q ss_pred             cCCCCcccEEEeCCCCeEEEEEEEeecCC
Q psy17087         28 NGDSGGPLVWKNNDTRKHYLIGLVSYGTP   56 (84)
Q Consensus        28 ~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~   56 (84)
                      .|+|||||+-.  +|+   |+||.+....
T Consensus       165 ~G~SGGPv~d~--~G~---vVGI~s~~~~  188 (205)
T d1lcya2         165 FGNAGGPLVNL--DGE---VIGVNTMKVT  188 (205)
T ss_dssp             TTTTTSEEEET--TSC---EEEEEEEEEE
T ss_pred             CCCCcCcEECC--CCE---EEEEEeeEcc
Confidence            48999999843  277   9999987654

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.03  E-value=0.06  Score=31.57  Aligned_cols=50  Identities=24%  Similarity=0.249  Sum_probs=29.4

Q ss_pred             CccCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCC---------CcEEEeccccHHHHHHHhh
Q psy17087         26 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS---------PGIYTRITAYLPWIIARMA   81 (84)
Q Consensus        26 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~---------p~v~t~v~~~~~WI~~~~~   81 (84)
                      .-.|.|||||+-.  .|.   ++||.+.... .....         .....-+....+++++.++
T Consensus       159 i~~G~SGGPv~n~--~G~---vVGI~~~~~~-~~~~~~~~~~~~~gi~faIP~~~v~~~l~~l~~  217 (221)
T d2z9ia2         159 INPGNSGGALVNM--NAQ---LVGVNSAIAT-LGADSADAQSGSIGLGFAIPVDQAKRIADELIS  217 (221)
T ss_dssp             CCTTCTTEEEECT--TSE---EEEEEEEECC-C-------CCCCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCcC--CCE---EEEEEEEEec-ccccccccccCccCeEEEEEHHHHHHHHHHHHH
Confidence            3458999999843  267   9999987654 21111         1223445556666666543

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=91.70  E-value=0.086  Score=30.34  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=28.5

Q ss_pred             cCCCCcccEEEeCCCCeEEEEEEEeecCCCCCCCCCcEEEeccccHHHHHHH
Q psy17087         28 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR   79 (84)
Q Consensus        28 ~gdsGgPl~~~~~~~~~~~l~Gi~s~~~~~C~~~~p~v~t~v~~~~~WI~~~   79 (84)
                      .|++||||+.... .. ..++||.+.|.. .    -+..+.|  .+++|++.
T Consensus       154 ~G~cGgplv~~~~-~~-~~IvGih~aG~~-g----~G~a~~i--t~e~i~~~  196 (199)
T d2bhga1         154 AGYAGGAVLAKDG-AD-TFIVGTHSAGGN-G----VGYCSCV--SRSMLQKM  196 (199)
T ss_dssp             TTCTTCEEEEEET-TE-EEEEEEEEEEET-T----EEEEEEC--CHHHHHHH
T ss_pred             CCCcCCeEEEecC-Ce-EEEEEEEeCCCC-C----EEEEEEc--cHHHHHHH
Confidence            5999999987653 22 569999998865 1    2444444  45666654