Psyllid ID: psy17538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maeflavplkkptdvdiiKPLKNLIalqfpndnekLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLeskifpatvnipfrwkdafnkgslfggrisLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST
Flexible Loop (DISEMBL)
maeflavplkkptdvdiIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQssagifnylkst
Low Complexity Region (SEG)
MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNiaalqsaiaqaqslDTDEGLKLAAKMLQSSAGIFNYLKST
Disordered region (IsUnstruct)
*****AVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDT*EGLKLAAKML***AGIFNY****
Disordered Region (DISOPRED)
*AEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKG************SLAWERVCVLFNIAALQSAIAQ********GLKLAAKMLQSSAGIFNYLKS*
Disordered Region (DISEMBL)
MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST
Disordered Region (DISPRO)
***FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q9W6C5	867	Programmed cell death 6-i	N/A	N/A	0.987	0.186	0.461	4e-37
Q8WUM4	868	Programmed cell death 6-i	yes	N/A	0.993	0.187	0.479	8e-37
Q9QZA2	873	Programmed cell death 6-i	yes	N/A	0.993	0.186	0.467	3e-35
Q9WU78	869	Programmed cell death 6-i	yes	N/A	0.993	0.187	0.467	4e-35
P34552	882	Apoptosis-linked gene 2-i	yes	N/A	0.963	0.179	0.432	5e-32
Q63ZR5	683	Rhophilin-2-B OS=Xenopus	N/A	N/A	0.908	0.218	0.331	6e-13
Q4X0Z5	976	Vacuolar protein-sorting	yes	N/A	0.890	0.149	0.310	6e-13
Q6DJJ6	683	Rhophilin-2-A OS=Xenopus	N/A	N/A	0.908	0.218	0.319	3e-12
C8V212	1000	Vacuolar protein-sorting	no	N/A	0.884	0.145	0.320	5e-12
Q7SAN9	1012	Vacuolar protein-sorting	N/A	N/A	0.896	0.145	0.337	1e-11

>sp|Q9W6C5|PDC6I_XENLA Programmed cell death 6-interacting protein OS=Xenopus laevis GN=pdcd6ip PE=1 SV=1

 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 5/167 (2%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MA F++VPLKK ++VD++KPL   I   +P+  ++ +     ++  +KLR +AV +  +K
Sbjct: 1   MATFISVPLKKTSEVDLVKPLSKYIHNTYPSGEDQTEYC-RAVDELNKLRKSAVGRPLDK 59

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
           HE+SLE +  YYD L S+E K FP T +   + F WKDAF+KGS+FGG + L + SL +E
Sbjct: 60  HETSLETVMRYYDQLCSVEPK-FPFTESQLCLTFTWKDAFDKGSIFGGSVKLALPSLGYE 118

Query: 118 RVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           + CVLFNI AL S IA  Q+LD DE LK A+K  Q ++G F+++K T
Sbjct: 119 KTCVLFNIGALASQIASEQNLDNDEALKAASKFYQLASGAFSHIKDT 165

Class E VPS protein involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles that are generated by invagination and scission from the limiting membrane of the endosome (By similarity). May be a signal transduction protein.
Xenopus laevis (taxid: 8355)

>sp|Q8WUM4|PDC6I_HUMAN Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1

 Score =  152 bits (384), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 107/167 (64%), Gaps = 4/167 (2%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MA F++V LKK ++VD+ KPL   I   +P+  E+           SKLR AAV +  +K
Sbjct: 1   MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK 60

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
           HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct: 61  HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 119

Query: 118 RVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           + CVLFN AAL S IA  Q+LD DEGLK+AAK  Q ++G F ++K T
Sbjct: 120 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKET 166

Class E VPS protein involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome. Binds to the phospholipid lysobisphosphatidic acid (LBPA) which is abundant in MVBs internal membranes. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and enveloped virus budding (HIV-1 and other lentiviruses). Appears to be an adapter for a subset of ESCRT-III proteins, such as CHMP4, to function at distinct membranes. Required for completion of cytokinesis. Involved in HIV-1 virus budding. Can replace TSG101 it its role of supporting HIV-1 release; this function implies the interaction with CHMP4B. May play a role in the regulation of both apoptosis and cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q9QZA2|PDC6I_RAT Programmed cell death 6-interacting protein OS=Rattus norvegicus GN=Pdcd6ip PE=1 SV=2

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 4/167 (2%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MA F+ V LKK ++VD+ KPL   I   +P+  E+           SKLR +A+ +  +K
Sbjct: 1   MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDK 60

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
           HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct: 61  HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 119

Query: 118 RVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           + CVLFN AAL S IA  Q+LD DEGLK AAK  Q ++G F ++K T
Sbjct: 120 KSCVLFNCAALASQIAAEQNLDNDEGLKTAAKQYQFASGAFLHIKDT 166

Class E VPS protein involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome. Binds to the phospholipid lysobisphosphatidic acid (LBPA) which is abundant in MVBs internal membranes. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. Appears to be an adapter for a subset of ESCRT-III proteins, such as CHMP4, to function at distinct membranes. Required for completion of cytokinesis. May play a role in the regulation of both apoptosis and cell proliferation.

Rattus norvegicus (taxid: 10116)

>sp|Q9WU78|PDC6I_MOUSE Programmed cell death 6-interacting protein OS=Mus musculus GN=Pdcd6ip PE=1 SV=3

 Score =  147 bits (370), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 4/167 (2%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MA F+ V LKK ++VD+ KPL   I   +P+  E+           SKLR +A+ +  +K
Sbjct: 1   MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDK 60

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
           HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct: 61  HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 119

Query: 118 RVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           + CVLFN AAL S IA  Q+LD DEGLK AAK  Q ++G F ++K T
Sbjct: 120 KSCVLFNCAALASQIAAEQNLDNDEGLKTAAKQYQFASGAFLHIKDT 166

Class E VPS protein involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome. Binds to the phospholipid lysobisphosphatidic acid (LBPA) which is abundant in MVBs internal membranes. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. Appears to be an adapter for a subset of ESCRT-III proteins, such as CHMP4, to function at distinct membranes. Required for completion of cytokinesis. May play a role in the regulation of both apoptosis and cell proliferation.

Mus musculus (taxid: 10090)

>sp|P34552|ALX1_CAEEL Apoptosis-linked gene 2-interacting protein X 1 OS=Caenorhabditis elegans GN=alx-1 PE=1 SV=3

 Score =  136 bits (343), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 106/162 (65%), Gaps = 4/162 (2%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQF-PNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHE 62
           FL+ PLK   +VD++KPL + I   +  +DN + D+  E +   +KLR+ A  +  +KH+
Sbjct: 6   FLSAPLKSTNEVDLVKPLTSYIDNVYNTSDNNRSDVA-EAVQELNKLRSKACCQPLDKHQ 64

Query: 63  SSLEVIYSYYDHLVSLESKIFPATVNIP--FRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
           S+L+V+  YYD LV++E+KI  +    P  F+WKDAF+KGSLF  R SL++   ++ER  
Sbjct: 65  SALDVLTRYYDQLVAIENKIIISATQNPVVFKWKDAFDKGSLFSSRASLSLSDGSFERAA 124

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLK 162
           VLFNI +L S I  AQ   TD+ +K++AK+ Q SAG+F  L+
Sbjct: 125 VLFNIGSLMSQIGAAQQFHTDDEIKVSAKLFQQSAGVFARLR 166

Required for lin-12 degradation after it has been internalised in the vulval precursor cells.

Caenorhabditis elegans (taxid: 6239)

>sp|Q63ZR5|RHN2B_XENLA Rhophilin-2-B OS=Xenopus laevis GN=rhpn2-b PE=2 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHES 63
            + + LK+  DVD     K+ I   +  D  + +  NE  +L   LR A   +   + E+
Sbjct: 111 LIPLGLKETKDVDFTTAFKDFILEHYSEDASEYE--NELADLMD-LRQAC--RTPSRDEA 165

Query: 64  SLEVIYSYYDHLVSLESKIFPATVNIP--FRWKDAFNKGSLFGGRISLTVCSLAWERVCV 121
            +E++ SY+  L  LE++ FP + NI   F W D+F    +    ISL       E+  +
Sbjct: 166 GVELLVSYFQQLGYLENRFFPPSRNIGILFTWYDSFTGVPVSQPNISL-------EKASI 218

Query: 122 LFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           LFNIAAL S I    +  T  GL+ A    Q +AG+ NYLK T
Sbjct: 219 LFNIAALYSQIGTRCNRQTKIGLEEAVTTFQKAAGVLNYLKET 261

Binds specifically to GTP-Rho.

Xenopus laevis (taxid: 8355)

>sp|Q4X0Z5|BRO1_ASPFU Vacuolar protein-sorting protein bro1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bro1 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 15/161 (9%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHES 63
            L+ PLK+  ++D I+PLK+ I   +  D E+    N++    ++LR   +    +   +
Sbjct: 6   MLSCPLKQTNEIDWIRPLKDYIRQSYGEDPERY---NQECATLNRLRQD-MRGAGKDSAT 61

Query: 64  SLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
             +++Y YY  L  L+ + FP   N   I F W DAF            +  SLA+E+  
Sbjct: 62  GRDLLYRYYGQLELLDLR-FPVDENHIKISFTWYDAFT-------HKPTSQYSLAYEKAS 113

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYL 161
           ++FNI+A+ S  A  Q+   + GLK A    Q+SAG+F Y+
Sbjct: 114 IIFNISAVLSCHAANQNRAEESGLKTAYHSFQASAGMFTYI 154

Involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q6DJJ6|RHN2A_XENLA Rhophilin-2-A OS=Xenopus laevis GN=rhpn2-a PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHES 63
            + + LK+  DVD     K+ I+  +  D  + +  NE  +L   LR A   +   + E+
Sbjct: 111 LIPLGLKETKDVDFTTAFKDFISEHYSEDASEYE--NELADLMD-LRQAC--RTPSRDEA 165

Query: 64  SLEVIYSYYDHLVSLESKIFPATVN--IPFRWKDAFNKGSLFGGRISLTVCSLAWERVCV 121
            +E++ SY+  L  LE++ FP + N  I F W D+F    +    ISL       E+  +
Sbjct: 166 GVELLVSYFQQLGYLENRFFPPSRNLGILFTWYDSFTGVPVSQPNISL-------EKASI 218

Query: 122 LFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           LFNIAAL + I    +  T  GL+ A    Q + G+ NYLK T
Sbjct: 219 LFNIAALYTQIGTRCNRQTKIGLEEAVTAFQKATGVLNYLKET 261

Binds specifically to GTP-Rho.

Xenopus laevis (taxid: 8355)

>sp|C8V212|BRO1_EMENI Vacuolar protein-sorting protein bro1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=broA PE=3 SV=1

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 17/162 (10%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLN-LFSKLRTAAVWKVFEKHE 62
            ++ PLK+  ++D I+PLK+ I   +  D E+       LN L   +R A      +   
Sbjct: 6   MISCPLKQTNEIDWIQPLKDYIRQSYGEDPERYSQECATLNRLRQDMRGAG-----KDSA 60

Query: 63  SSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWERV 119
           +  +++Y YY  L  L+ + FP   N   I F W DAF            +  SLA+E+ 
Sbjct: 61  TGRDLLYRYYGQLELLDLR-FPVDENHIKISFTWYDAFT-------HKPTSQYSLAFEKA 112

Query: 120 CVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYL 161
            ++FNI+A+ S  A  Q+   D GLK A    Q+SAG+F Y+
Sbjct: 113 SIIFNISAVLSCHAANQNRADDIGLKTAYHNFQASAGMFTYI 154

Involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q7SAN9|BRO1_NEUCR Vacuolar protein-sorting protein bro-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bro-1 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 19/166 (11%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLN-LFSKLRTAAVWKVFE 59
            A  ++VPLK  +++D + PLKN I   + +D E+       LN L   +R A      +
Sbjct: 3   QAPMISVPLKATSEIDWVAPLKNYIRNTYGDDPERYAEECATLNRLRQDMRGAG-----K 57

Query: 60  KHESSLEVIYSYYDHLVSLESKIFPA---TVNIPFRWKDAFNKGSLFGGRISLTVCSLAW 116
              S  +++Y YY  L  L+ + FP     + I F W DAF               SLA+
Sbjct: 58  DSTSGRDLLYRYYGQLELLDLR-FPVDEKNIKISFTWFDAFTHKPT-------AQYSLAF 109

Query: 117 ERVCVLFNIAALQSAIAQAQSLDTDE-GLKLAAKMLQSSAGIFNYL 161
           E+  ++FNI+A+ S  A A  L T+E GLK A    Q+SAG+F Y+
Sbjct: 110 EKASIIFNISAVLSCHA-AHQLRTEEAGLKTAYHSFQASAGMFTYI 154

Involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
270001905	846	hypothetical protein TcasGA2_TC000807 [T	0.993	0.192	0.621	6e-55
189234326	838	PREDICTED: similar to programmed cell de	0.993	0.194	0.621	6e-55
340713150	821	PREDICTED: programmed cell death 6-inter	0.981	0.196	0.631	7e-54
157128931	836	programmed cell death 6-interacting prot	0.993	0.194	0.603	7e-54
350417083	821	PREDICTED: programmed cell death 6-inter	0.981	0.196	0.631	9e-54
242003697	827	Programmed cell death 6-interacting prot	0.987	0.195	0.607	5e-53
332372720	824	unknown [Dendroctonus ponderosae]	0.987	0.196	0.612	6e-53
194745668	836	GF18695 [Drosophila ananassae] gi|190628	0.993	0.194	0.603	3e-52
195113591	833	GI10741 [Drosophila mojavensis] gi|19391	0.993	0.195	0.609	4e-52
66530284	816	PREDICTED: programmed cell death 6-inter	0.963	0.193	0.613	7e-52

>gi|270001905|gb|EEZ98352.1| hypothetical protein TcasGA2_TC000807 [Tribolium castaneum]

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 135/164 (82%), Gaps = 1/164 (0%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MAE L+VPLKKP++VDI+ PLKNLI  ++ +  +K +  NE ++  +KLR  A+WK FEK
Sbjct: 1   MAELLSVPLKKPSEVDIVTPLKNLIQSRY-STADKPEDCNEAISELAKLRNTAIWKAFEK 59

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
           +ESSLE+IY YYD LVSLE+KI    + +PF+WKDAF+KGS+FG RISLT+ SL +E++C
Sbjct: 60  YESSLEIIYGYYDQLVSLETKIPAQELQVPFKWKDAFDKGSIFGNRISLTIPSLGYEKIC 119

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           VLFNIAALQSA+A +QS+++DE LKLAAK+LQ +AGIFN+LKST
Sbjct: 120 VLFNIAALQSAVAASQSIESDESLKLAAKLLQQAAGIFNHLKST 163

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234326|ref|XP_973055.2| PREDICTED: similar to programmed cell death 6-interacting protein [Tribolium castaneum]

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 135/164 (82%), Gaps = 1/164 (0%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MAE L+VPLKKP++VDI+ PLKNLI  ++ +  +K +  NE ++  +KLR  A+WK FEK
Sbjct: 1   MAELLSVPLKKPSEVDIVTPLKNLIQSRY-STADKPEDCNEAISELAKLRNTAIWKAFEK 59

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
           +ESSLE+IY YYD LVSLE+KI    + +PF+WKDAF+KGS+FG RISLT+ SL +E++C
Sbjct: 60  YESSLEIIYGYYDQLVSLETKIPAQELQVPFKWKDAFDKGSIFGNRISLTIPSLGYEKIC 119

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           VLFNIAALQSA+A +QS+++DE LKLAAK+LQ +AGIFN+LKST
Sbjct: 120 VLFNIAALQSAVAASQSIESDESLKLAAKLLQQAAGIFNHLKST 163

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713150|ref|XP_003395111.1| PREDICTED: programmed cell death 6-interacting protein-like [Bombus terrestris]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 133/163 (81%), Gaps = 2/163 (1%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MAE +AVPLKKP+DVD+IKPL N+I   + N N++ D   E +  FSKLR  A+W+ FEK
Sbjct: 1   MAELIAVPLKKPSDVDVIKPLTNIIKSTYNNANDQKD-YTEAIADFSKLRNNALWRAFEK 59

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
           +ESSLEVIYSYYD L +LE KI    + IPF+WKDAF++ ++FGG++SLT+ +LA+E+VC
Sbjct: 60  YESSLEVIYSYYDQLCALEGKIPAHELQIPFKWKDAFDR-TIFGGKLSLTISTLAYEKVC 118

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKS 163
           VLFNIAALQS++A AQSL++DEGLKLAAK+ Q SAGIFNYLK+
Sbjct: 119 VLFNIAALQSSVAAAQSLESDEGLKLAAKLFQQSAGIFNYLKA 161

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128931|ref|XP_001661554.1| programmed cell death 6-interacting protein [Aedes aegypti] gi|108872429|gb|EAT36654.1| AAEL011271-PA [Aedes aegypti]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 132/164 (80%), Gaps = 1/164 (0%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPN-DNEKLDILNEKLNLFSKLRTAAVWKVFE 59
           M++ L+VP+KKPTDVD+ +PL NLI   + N  +EK+  ++E +N F++ R +AVWK FE
Sbjct: 1   MSDLLSVPVKKPTDVDVTRPLNNLIKSSYSNLGSEKIVEISESVNKFNQQRNSAVWKAFE 60

Query: 60  KHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERV 119
           K ESSLE++Y YYD L +LE+KI      +PF+WKDAF+KGS+FGGR+SLT+ SL++E+V
Sbjct: 61  KFESSLEILYGYYDQLSALETKIVVQDFQVPFKWKDAFDKGSIFGGRMSLTLTSLSYEKV 120

Query: 120 CVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKS 163
           C+LFNIAALQSA+A +Q LD DEGLKLAAK+ Q SAGIFN+LKS
Sbjct: 121 CILFNIAALQSAVASSQGLDNDEGLKLAAKLFQQSAGIFNHLKS 164

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417083|ref|XP_003491248.1| PREDICTED: programmed cell death 6-interacting protein-like [Bombus impatiens]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 133/163 (81%), Gaps = 2/163 (1%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MAE +AVPLKKP+DVD+IKPL N+I   + N N++ D   E +  FSKLR  A+W+ FEK
Sbjct: 1   MAELIAVPLKKPSDVDVIKPLTNIIKSTYNNANDQKD-YTEAIADFSKLRNNALWRAFEK 59

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
           +ESSLEVIYSYYD L +LE KI    + IPF+WKDAF++ ++FGG++SLT+ +LA+E+VC
Sbjct: 60  YESSLEVIYSYYDQLCALEGKIPAHELQIPFKWKDAFDR-TIFGGKLSLTISTLAYEKVC 118

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKS 163
           VLFNIAALQS++A AQSL++DEGLKLAAK+ Q SAGIFNYLK+
Sbjct: 119 VLFNIAALQSSVAAAQSLESDEGLKLAAKLFQQSAGIFNYLKA 161

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003697|ref|XP_002422826.1| Programmed cell death 6-interacting protein, putative [Pediculus humanus corporis] gi|212505696|gb|EEB10088.1| Programmed cell death 6-interacting protein, putative [Pediculus humanus corporis]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 99/163 (60%), Positives = 131/163 (80%), Gaps = 1/163 (0%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MAE L+VPLKKPTD+D+++PL+NL+   F + +   +  NE +  F+K+R+ AVWK FEK
Sbjct: 1   MAELLSVPLKKPTDIDLVQPLRNLVKGSFSSADHPEECDNE-IAEFNKMRSTAVWKFFEK 59

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
            ESSLEV+YSYYD LV LESK+    V IPF+WKDAF+KGS+FG +I LT+CSL++E+VC
Sbjct: 60  FESSLEVVYSYYDQLVLLESKVPAHEVQIPFKWKDAFDKGSIFGTKIGLTICSLSYEKVC 119

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKS 163
           VL+NIAALQSA+A +QSLD D+ LKLAAK+ Q +AGIF +LK+
Sbjct: 120 VLYNIAALQSAVAASQSLDNDDALKLAAKLFQQAAGIFTHLKA 162

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372720|gb|AEE61502.1| unknown [Dendroctonus ponderosae]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 101/165 (61%), Positives = 132/165 (80%), Gaps = 3/165 (1%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPN-DNEKLDILNEKLNLFSKLRTAAVWKVFE 59
           MA+ LAVPLK+P+DVD+I PLKNLI  ++   DN   +   E +N FSKLR  A+WK FE
Sbjct: 1   MADLLAVPLKRPSDVDVINPLKNLIQSRYSTADNP--ENCTEAVNEFSKLRNNAIWKAFE 58

Query: 60  KHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERV 119
           K+ESSLE+IY YYD LV+LE KI    + +PF+WKDAF++G++FG + SLTV SL++E+V
Sbjct: 59  KYESSLEIIYGYYDQLVALEGKIPSQELQVPFKWKDAFDRGNIFGHKASLTVASLSYEKV 118

Query: 120 CVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           CVLFNIAALQS++A  QS++ D+GLKLAAK+LQ +AGIF+YLKST
Sbjct: 119 CVLFNIAALQSSVAAEQSVENDDGLKLAAKLLQQAAGIFSYLKST 163

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745668|ref|XP_001955309.1| GF18695 [Drosophila ananassae] gi|190628346|gb|EDV43870.1| GF18695 [Drosophila ananassae]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 128/164 (78%), Gaps = 1/164 (0%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDI-LNEKLNLFSKLRTAAVWKVFE 59
           M++FL VPLKKP++VD++KPL NLI   +    E+      E +N FSK R  A+WK FE
Sbjct: 1   MSKFLGVPLKKPSEVDVVKPLNNLIQSTYNGATEEEKAKYAEAVNEFSKQRNTAIWKFFE 60

Query: 60  KHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERV 119
           K+E+SLE++Y+YYD + +LE+KI  + + IPF+WKDAF+KGS+FGG+ISLT  SL +E+V
Sbjct: 61  KYEASLEIVYAYYDQICALETKIAASELQIPFKWKDAFDKGSIFGGKISLTHTSLLYEKV 120

Query: 120 CVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKS 163
           CVLFNIAALQS+IA +Q LDTDEGLKLA K+LQ SAGIF YLK 
Sbjct: 121 CVLFNIAALQSSIAASQQLDTDEGLKLAIKLLQQSAGIFQYLKG 164

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113591|ref|XP_002001351.1| GI10741 [Drosophila mojavensis] gi|193917945|gb|EDW16812.1| GI10741 [Drosophila mojavensis]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 100/164 (60%), Positives = 129/164 (78%), Gaps = 1/164 (0%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDN-EKLDILNEKLNLFSKLRTAAVWKVFE 59
           M++ L VPLKKP++VDIIKPL NLI   +   + E+     E +N FSK R  A+WK FE
Sbjct: 1   MSKLLGVPLKKPSEVDIIKPLNNLIQSTYNGASAEEKAQYAEAVNEFSKQRNTAIWKFFE 60

Query: 60  KHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERV 119
           K+E+SLE++Y+YYD + +LE+KI  + + IPF+WKDAF+KGS+FGG+ISLT  SL +E+V
Sbjct: 61  KYETSLEIVYAYYDQITALETKISASELQIPFKWKDAFDKGSIFGGKISLTHTSLLYEKV 120

Query: 120 CVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKS 163
           CVLFNIAALQS++A +Q LDTDEGLKLA K+LQ SAGIF YLKS
Sbjct: 121 CVLFNIAALQSSVAASQDLDTDEGLKLAIKLLQQSAGIFQYLKS 164

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66530284|ref|XP_396117.2| PREDICTED: programmed cell death 6-interacting protein [Apis mellifera]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 100/163 (61%), Positives = 130/163 (79%), Gaps = 5/163 (3%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MAE +AVPLKKP+DVD+IKPL N+I   + N  +      E +  FSKLR  A+W+ FEK
Sbjct: 1   MAELIAVPLKKPSDVDVIKPLTNVIKSTYNNQKD----YTEAIADFSKLRNNALWRAFEK 56

Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
           +ESSLEVIYSYYD L +LE KI    + IPF+WKDAF++ ++FGG++SLT+ +L++E+VC
Sbjct: 57  YESSLEVIYSYYDQLCALEGKIPAHELQIPFKWKDAFDR-TIFGGKLSLTISTLSYEKVC 115

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKS 163
           VLFNIAALQS++A AQSL++DEGLKLAAK+ Q SAGIFNYLK+
Sbjct: 116 VLFNIAALQSSVAAAQSLESDEGLKLAAKLFQQSAGIFNYLKA 158

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
FB|FBgn0086346	836	ALiX "ALG-2 interacting protei	0.987	0.193	0.533	3e-42
ZFIN|ZDB-GENE-040426-2678	873	pdcd6ip "programmed cell death	0.993	0.186	0.427	1.3e-31
UNIPROTKB|Q8WUM4	868	PDCD6IP "Programmed cell death	0.993	0.187	0.431	1.8e-29
UNIPROTKB|E1BKM4	914	PDCD6IP "Uncharacterized prote	0.993	0.178	0.425	4.1e-29
UNIPROTKB|F1NKK1	893	PDCD6IP "Uncharacterized prote	0.987	0.181	0.428	1.1e-28
MGI|MGI:1333753	869	Pdcd6ip "programmed cell death	0.993	0.187	0.419	2.1e-28
RGD|68357	873	Pdcd6ip "programmed cell death	0.993	0.186	0.419	2.1e-28
UNIPROTKB|Q9QZA2	873	Pdcd6ip "Programmed cell death	0.993	0.186	0.419	2.1e-28
WB|WBGene00007010	882	alx-1 [Caenorhabditis elegans	0.963	0.179	0.407	3.9e-26
DICTYBASE|DDB_G0275451	794	alxA "ALG-2 interacting protei	0.896	0.185	0.316	7.9e-10

FB|FBgn0086346 ALiX "ALG-2 interacting protein X" [Drosophila melanogaster (taxid:7227)]

 Score = 455 (165.2 bits), Expect = 3.0e-42, P = 3.0e-42
 Identities = 87/163 (53%), Positives = 115/163 (70%)

Query:     1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPN-DNEKLDILNEKLNLFSKLRTAAVWKVFE 59
             M++FL VPLKKP++VD+IKPL NLI   +     E+     E +N FSK R  A+WK FE
Sbjct:     1 MSKFLGVPLKKPSEVDVIKPLNNLIQSTYNGASEEEKGKYGEAVNEFSKQRNTAIWKFFE 60

Query:    60 KHESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERV 119
             K+E+SLE++Y+YYD + +LE+KI  + + IPF+WKDAF+KGS+FGG+ISLT  SL +E+V
Sbjct:    61 KYEASLEIVYAYYDQICALETKISVSELQIPFKWKDAFDKGSIFGGKISLTHTSLLYEKV 120

Query:   120 CVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLK 162
             CVLFN              D+D+GLKL  K+LQ SAGIF YLK
Sbjct:   121 CVLFNIAALQSNIAANQSLDSDDGLKLTIKLLQQSAGIFQYLK 163

GO:0004871 "signal transducer activity" evidence=ISS

GO:0046330 "positive regulation of JNK cascade" evidence=IDA;NAS

GO:0006915 "apoptotic process" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0030041 "actin filament polymerization" evidence=IMP

ZFIN|ZDB-GENE-040426-2678 pdcd6ip "programmed cell death 6 interacting protein" [Danio rerio (taxid:7955)]

 Score = 357 (130.7 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 71/166 (42%), Positives = 103/166 (62%)

Query:     1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
             MA F++VPLKK ++VD++KPL   +   +P   E+ + L   ++  +KLR +A+ +  +K
Sbjct:     1 MATFISVPLKKSSEVDLVKPLSKFVTATYPPGEEQAEYLRA-VDELNKLRKSALGRPLDK 59

Query:    61 HESSLEVIYSYYDHLVSLESKI-FPA-TVNIPFRWKDAFNKGSLFGGRISLTVCSLAWER 118
             HESSLE++  YYD L ++E K  FP   + + F WKDAF+KGSLFGG + L + SL +E+
Sbjct:    60 HESSLEILLRYYDQLCAIEPKFPFPEFQLCLTFTWKDAFDKGSLFGGSVKLALASLGYEK 119

Query:   119 VCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
              CVLFN              D DEGLK AAK  Q ++G F ++K T
Sbjct:   120 TCVLFNVGALASQIASEQNLDNDEGLKTAAKFYQLASGAFAHIKDT 165

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8WUM4 PDCD6IP "Programmed cell death 6-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 337 (123.7 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 72/167 (43%), Positives = 98/167 (58%)

Query:     1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
             MA F++V LKK ++VD+ KPL   I   +P+  E+           SKLR AAV +  +K
Sbjct:     1 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK 60

Query:    61 HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
             HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct:    61 HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 119

Query:   118 RVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
             + CVLFN              D DEGLK+AAK  Q ++G F ++K T
Sbjct:   120 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKET 166

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E1BKM4 PDCD6IP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 4.1e-29, P = 4.1e-29
 Identities = 71/167 (42%), Positives = 98/167 (58%)

Query:     1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
             MA F++V LKK ++VD+ KPL   I   +P+  E+           SKLR AA+ +  +K
Sbjct:    40 MAAFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAALGRPLDK 99

Query:    61 HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
             HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct:   100 HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 158

Query:   118 RVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
             + CVLFN              D DEGLK+AAK  Q ++G F ++K T
Sbjct:   159 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKET 205

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1NKK1 PDCD6IP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 330 (121.2 bits), Expect = 1.1e-28, P = 1.1e-28
 Identities = 72/168 (42%), Positives = 100/168 (59%)

Query:     1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
             M  F++V LKK ++VD+ KPL   I   +P+ + + +       L SKLR +A+ +  +K
Sbjct:     4 MTNFISVQLKKASEVDLAKPLCKFIQQSYPSGDAQAEHCRAAEEL-SKLRKSALGRPLDK 62

Query:    61 HESSLEVIYS-YYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAW 116
             HES+LE + S YYD L S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +
Sbjct:    63 HESALETLLSRYYDQLCSIEPK-FPFSENQVCVTFTWKDAFDKGSLFGGSVKLALASLGY 121

Query:   117 ERVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
             E+ CVLFN              D DEGLK AAK  Q ++G F ++K T
Sbjct:   122 EKTCVLFNCGALASQIAAEQNLDNDEGLKAAAKHYQFASGAFQHIKDT 169

GO:0005829 "cytosol" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

MGI|MGI:1333753 Pdcd6ip "programmed cell death 6 interacting protein" [Mus musculus (taxid:10090)]

 Score = 327 (120.2 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 70/167 (41%), Positives = 96/167 (57%)

Query:     1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
             MA F+ V LKK ++VD+ KPL   I   +P+  E+           SKLR +A+ +  +K
Sbjct:     1 MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDK 60

Query:    61 HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
             HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct:    61 HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 119

Query:   118 RVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
             + CVLFN              D DEGLK AAK  Q ++G F ++K T
Sbjct:   120 KSCVLFNCAALASQIAAEQNLDNDEGLKTAAKQYQFASGAFLHIKDT 166

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=TAS

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=IPI

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

RGD|68357 Pdcd6ip "programmed cell death 6 interacting protein" [Rattus norvegicus (taxid:10116)]

 Score = 327 (120.2 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 70/167 (41%), Positives = 96/167 (57%)

Query:     1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
             MA F+ V LKK ++VD+ KPL   I   +P+  E+           SKLR +A+ +  +K
Sbjct:     1 MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDK 60

Query:    61 HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
             HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct:    61 HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 119

Query:   118 RVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
             + CVLFN              D DEGLK AAK  Q ++G F ++K T
Sbjct:   120 KSCVLFNCAALASQIAAEQNLDNDEGLKTAAKQYQFASGAFLHIKDT 166

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA;ISO

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q9QZA2 Pdcd6ip "Programmed cell death 6-interacting protein" [Rattus norvegicus (taxid:10116)]

 Score = 327 (120.2 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 70/167 (41%), Positives = 96/167 (57%)

Query:     1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
             MA F+ V LKK ++VD+ KPL   I   +P+  E+           SKLR +A+ +  +K
Sbjct:     1 MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDK 60

Query:    61 HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
             HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct:    61 HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 119

Query:   118 RVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
             + CVLFN              D DEGLK AAK  Q ++G F ++K T
Sbjct:   120 KSCVLFNCAALASQIAAEQNLDNDEGLKTAAKQYQFASGAFLHIKDT 166

GO:0046983 "protein dimerization activity" evidence=IEA

WB|WBGene00007010 alx-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 306 (112.8 bits), Expect = 3.9e-26, P = 3.9e-26
 Identities = 66/162 (40%), Positives = 101/162 (62%)

Query:     4 FLAVPLKKPTDVDIIKPLKNLIALQF-PNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHE 62
             FL+ PLK   +VD++KPL + I   +  +DN + D+  E +   +KLR+ A  +  +KH+
Sbjct:     6 FLSAPLKSTNEVDLVKPLTSYIDNVYNTSDNNRSDVA-EAVQELNKLRSKACCQPLDKHQ 64

Query:    63 SSLEVIYSYYDHLVSLESKIF-PATVN-IPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
             S+L+V+  YYD LV++E+KI   AT N + F+WKDAF+KGSLF  R SL++   ++ER  
Sbjct:    65 SALDVLTRYYDQLVAIENKIIISATQNPVVFKWKDAFDKGSLFSSRASLSLSDGSFERAA 124

Query:   121 VLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLK 162
             VLFN               TD+ +K++AK+ Q SAG+F  L+
Sbjct:   125 VLFNIGSLMSQIGAAQQFHTDDEIKVSAKLFQQSAGVFARLR 166

GO:0030163 "protein catabolic process" evidence=IMP

GO:0042176 "regulation of protein catabolic process" evidence=IMP

GO:0032456 "endocytic recycling" evidence=IMP

GO:0007032 "endosome organization" evidence=IMP

GO:0033365 "protein localization to organelle" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

GO:0005771 "multivesicular body" evidence=IDA

GO:0005112 "Notch binding" evidence=IPI

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0043226 "organelle" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=IDA

DICTYBASE|DDB_G0275451 alxA "ALG-2 interacting protein X" [Dictyostelium discoideum (taxid:44689)]

 Score = 153 (58.9 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 51/161 (31%), Positives = 76/161 (47%)

Query:     5 LAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESS 64
             L++  K+   VD  KPL   I  QF     + D    ++   + LR   V  + E+ E+S
Sbjct:     2 LSIERKRTEKVDFSKPLTKYIKEQF--SKAESDQHETQIATLNGLRED-VRNLQERTETS 58

Query:    65 LEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWERVCV 121
              E+++ YY  L SLE + FP + N   I F W D++ +      R S T+ S+ +ER  V
Sbjct:    59 KEMVWKYYSILSSLELR-FPISENNVRISFPWTDSYRQ------RKS-TLYSIYFERASV 110

Query:   122 LFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLK 162
             LFN                 EG+K A    Q +AG+FN L+
Sbjct:   111 LFNYGSIVSQIASSTNRSNIEGVKKACNQFQLAAGVFNKLR 151

GO:0045881 "positive regulation of sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0031286 "negative regulation of sorocarp stalk cell differentiation" evidence=IMP

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0005768 "endosome" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
cd09240	346	cd09240, BRO1_Alix, Protein-interacting, N-termina	3e-80
pfam03097	374	pfam03097, BRO1, BRO1-like domain	2e-45
smart01041	381	smart01041, BRO1, BRO1-like domain	3e-38
cd09241	355	cd09241, BRO1_ScRim20-like, Protein-interacting, N	5e-27
cd09242	348	cd09242, BRO1_ScBro1_like, Protein-interacting, N-	9e-25
cd09246	353	cd09246, BRO1_Alix_like_1, Protein-interacting, N-	1e-21
cd09034	345	cd09034, BRO1_Alix_like, Protein-interacting Bro1-	3e-21
cd09239	361	cd09239, BRO1_HD-PTP_like, Protein-interacting, N-	2e-17
cd09244	350	cd09244, BRO1_Rhophilin, Protein-interacting Bro1-	4e-17
cd09249	385	cd09249, BRO1_Rhophilin_2, Protein-interacting Bro	1e-15
cd09248	384	cd09248, BRO1_Rhophilin_1, Protein-interacting Bro	5e-15

>gnl|CDD|185763 cd09240, BRO1_Alix, Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains

 Score =  240 bits (615), Expect = 3e-80
 Identities = 89/166 (53%), Positives = 118/166 (71%), Gaps = 5/166 (3%)

Query: 2   AEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKH 61
           A F++VPLKK ++VD++KPL+  I   + +  E+ D   E +   +KLR  AV +  +KH
Sbjct: 1   ASFISVPLKKSSEVDLVKPLEKFIKNTYSSGEEQAD-YKEAIKELNKLRNNAVCRPLDKH 59

Query: 62  ESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWER 118
           ESSLE++  YYD L ++E K FP + +   + F WKDAF+KGSLFGG   L + SL +E+
Sbjct: 60  ESSLELLLRYYDQLCAIEPK-FPFSESQIQVTFTWKDAFDKGSLFGGSKKLALSSLGYEK 118

Query: 119 VCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           VCVLFNIAALQS IA  Q+LDTDEGLKLAAK+ Q +AGIFN+LK T
Sbjct: 119 VCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKET 164

This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4, in the case of Alix. The Alix Bro1-like domain can also bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid and Rab5-specfic GAP (RabGAP5, also known as Rab-GAPLP). In addition to this Bro1-like domain, Alix has a middle V-shaped (V) domain. The Alix V-domain is a dimerization domain, and carries a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in the superfamily. Alix also has a C-terminal proline-rich region (PRR) that binds multiple partners including Tsg101 (tumor susceptibility gene 101, a component of ESCRT-1) and the apoptotic protein ALG-2. Length = 346

>gnl|CDD|217365 pfam03097, BRO1, BRO1-like domain

 Score =  152 bits (385), Expect = 2e-45
 Identities = 66/161 (40%), Positives = 89/161 (55%), Gaps = 9/161 (5%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHES 63
            L +PLK+  +VD+ KPLK+ I   +  D    +   + L   +KLR  AV       ES
Sbjct: 1   LLPLPLKETKEVDLSKPLKDYILSTYGEDPSLFE---DDLAELNKLRQDAVNVPGSPDES 57

Query: 64  SLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLF 123
            LE++Y YY  L +LE +     + + F W DAF+ GS       +T  SLA+E+  VLF
Sbjct: 58  GLELLYRYYGQLEALEKRFPDDQLGVEFTWYDAFDTGS------PVTQSSLAFEKASVLF 111

Query: 124 NIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           N+AAL S IA +Q+ DTDEGLK A    Q +AG F YLK  
Sbjct: 112 NLAALYSQIAASQNRDTDEGLKAACDYFQKAAGAFEYLKEN 152

This domain is found in a number proteins including Rhophilin and BRO1. It is known to have a role in endosomal targeting. ESCRT-III subunit Snf7 binds to a conserved hydrophobic patch in the BRO1 domain that is required for protein complex formation and for the protein-sorting function of BRO1. Length = 374

>gnl|CDD|214990 smart01041, BRO1, BRO1-like domain

 Score =  134 bits (338), Expect = 3e-38
 Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 13/163 (7%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHES 63
            + +PLK+  +VD  KPLK+ I   +  D+   +   +++   ++LR AA      + ES
Sbjct: 1   LIPLPLKETKEVDFSKPLKDYIKETYSEDSSSYE---DEIAELNRLRQAARTP--SRDES 55

Query: 64  SLEVIYSYYDHLVSLESKIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCV 121
            LE++  YY  L +LE +  P    + + F W D+ + G         T  SLA+E+  V
Sbjct: 56  GLELLLKYYGQLEALELRFPPPEGQLKLSFTWYDSLDTGV------PSTQSSLAFEKASV 109

Query: 122 LFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           LFN+ AL S IA  Q+ DT+EGLK A K  Q +AG+FNYLK  
Sbjct: 110 LFNLGALYSQIAAEQNRDTEEGLKEACKAFQQAAGVFNYLKEN 152

This domain is found in a number proteins including Rhophilin and BRO1. It is known to have a role in endosomal targeting. ESCRT-III subunit Snf7 binds to a conserved hydrophobic patch in the BRO1 domain that is required for protein complex formation and for the protein-sorting function of BRO1. Length = 381

>gnl|CDD|185764 cd09241, BRO1_ScRim20-like, Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins

 Score =  103 bits (259), Expect = 5e-27
 Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 3   EFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHE 62
             L++P K+   VD+   L+N I+  +       +   + L    KLR  A+    E   
Sbjct: 1   NLLSIPFKRTLPVDLKDALRNYISNHYFQTPSSFE---DDLAEIDKLRNDAINP--EPSV 55

Query: 63  SSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVL 122
           + L ++  YY  LV L  K FP    + F W      G    G +SL+  SL +ER  +L
Sbjct: 56  NGLSLLKEYYAQLVVLSKK-FPD-DQLEFTWYPTL--GYKSSGPVSLS--SLKFERANIL 109

Query: 123 FNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKS 163
           +N+ AL S +A +++  TDEGLK A    Q+SAG F Y+  
Sbjct: 110 YNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQ 150

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the case of Rim20. RIM20, and some other members of the BRO1_Alix_like superfamily including Alix, also have a V-shaped (V) domain. In the case of Alix, the V-domain is a dimerization domain that also contains a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in the V-domain superfamily. Rim20 localizes to endosomes under alkaline pH conditions. By binding Snf7, it may bring the protease Rim13 (a YPxL-containing transcription factor) into proximity with Rim101, and thus aid in the proteolytic activation of the latter. Rim20 and other intermediates in the Rim101 pathway play roles in the pathogenesis of fungal corneal infection during Candida albicans keratitis. Length = 355

>gnl|CDD|185765 cd09242, BRO1_ScBro1_like, Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins

 Score = 97.4 bits (243), Expect = 9e-25
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHES 63
            +++PLK   +VD  KPL + +   + +     +   E++  F +LR  A   V    E+
Sbjct: 1   LISLPLKDTEEVDWKKPLSSYLKRSYGSSTFYYE---EEIAEFDRLRQDAN-GVLAD-ET 55

Query: 64  SLEVIYSYYDHLVSLESKIFPATV--NIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCV 121
             +++Y YY  L  LE +         + F W DAF K             SLA+E+  V
Sbjct: 56  GRDLLYKYYGQLELLELRFPFNNKELKVDFTWYDAFYKSKKV------KQHSLAFEKASV 109

Query: 122 LFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLK 162
           LFNI AL S +A  +  + ++ LK A   LQ +AG F Y+ 
Sbjct: 110 LFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYIN 150

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the case of Bro1. Snf7 binds to a conserved hydrophobic patch on the middle of the concave side of the Bro1 domain. RIM20, and some other members of the BRO1_Alix_like superfamily including Alix, also have a V-shaped (V) domain. In the case of Alix, the V-domain contains a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in the superfamily. The Alix V-domain is also a dimerization domain. The C-terminal portion (V-domain and proline rich-region) of Bro1 interacts with Doa4, a protease that deubiquitinates integral membrane proteins sorted into the lumenal vesicles of late-endosomal multivesicular bodies. It interacts with a YPxL motif in the Doa4 catalytic domain to stimulate its deubiquitination activity. Length = 348

>gnl|CDD|185769 cd09246, BRO1_Alix_like_1, Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

 Score = 89.0 bits (221), Expect = 1e-21
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 15/163 (9%)

Query: 5   LAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESS 64
           L++  KK   VD++ PL+  I+  +     +     + L    +LR+     + EKH +S
Sbjct: 2   LSIHRKKTETVDLVSPLRAYISETYSER--EAQDAEDDLAELQQLRSEVR-TLQEKHAAS 58

Query: 65  LEVIYSYYDHLVSLESKIFPAT-----VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERV 119
            E++  YY  L ++ES+ FP +       + F W DAF +          T  ++ +E+ 
Sbjct: 59  RELLLRYYRALCAVESR-FPISEESGHARVSFSWYDAF-RPHRKA-----TQANVHFEKA 111

Query: 120 CVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLK 162
            VLFN+ AL S +   Q   T EG+K A    Q++AG F +L+
Sbjct: 112 AVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLR 154

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in endosomal trafficking, with HD-PTP having additional functions in cell migration. Rim20 and Rim23 play roles in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 (in the case of Alix, Brox and HD-PTP) and Snf7 (in the case of yeast Bro1 and Rim20). The Bro1-like domains of Alix, HD-PTP, Brox, and Rhophilin can bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. In addition to this Bro1-like domain, Alix, Bro1, Rim20, HD_PTP, and proteins belonging to this uncharacterized family, also have a V-shaped (V) domain. The Alix V-domain is a dimerization domain, and contains a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in the BRO1_Alix_like superfamily. Many members of this superfamily also have a proline-rich region (PRR), a protein interaction domain. Length = 353

>gnl|CDD|185761 cd09034, BRO1_Alix_like, Protein-interacting Bro1-like domain of mammalian Alix and related domains

 Score = 87.8 bits (218), Expect = 3e-21
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 20/169 (11%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHES 63
           F+ +PLKK  +VD+  PL   I   +           + +   SKLR   V    E++  
Sbjct: 1   FIGLPLKKTKEVDVKVPLSKFIPKNYGELEATAV--EDLIEKLSKLRNNIV---TEQNND 55

Query: 64  S-----LEVIYSYYDHLVSLESKIFPA--TVNIPFRWKDAFNKGSLFGGRISLTVCSLAW 116
           +     LE +  Y  +L+ LE K+       N+ F W D+F+       + S T  SL +
Sbjct: 56  TTCENLLEALKEYLPYLLGLEKKLPFQKLRDNVEFTWTDSFDTK-----KESAT--SLRY 108

Query: 117 ERVCVLFNIAALQSAIAQAQ-SLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           E + +LFN+AAL S +A  +    ++E LK A K LQ +AG F YLK  
Sbjct: 109 ELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEH 157

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 (in the case of Alix, HD-PTP, and Brox) and Snf7 (in the case of yeast Bro1, and Rim20). The single domain protein human Brox, and the isolated Bro1-like domains of Alix, HD-PTP and Rhophilin can bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. Alix, HD-PTP, Bro1, and Rim20 also have a V-shaped (V) domain, which in the case of Alix, has been shown to be a dimerization domain and to contain a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in this superfamily. Alix, HD-PTP and Bro1 also have a proline-rich region (PRR); the Alix PRR binds multiple partners. Rhophilin-1, and -2, in addition to this Bro1-like domain, have an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. HD-PTP is encoded by the PTPN23 gene, a tumor suppressor gene candidate frequently absent in human kidney, breast, lung, and cervical tumors. This protein has a C-terminal, catalytically inactive tyrosine phosphatase domain. Length = 345

>gnl|CDD|185762 cd09239, BRO1_HD-PTP_like, Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 17/163 (10%)

Query: 5   LAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESS 64
           L + LK   +      LK  I   +    E  ++ +E+L    +LR  AV     +    
Sbjct: 9   LWLQLKSSGEFTFQPALKKYILENY---GEDPELYSEELKSLEQLRQEAV--NPPRDFEG 63

Query: 65  LEVIYSYYDHLVSLESKIFPAT----VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
             V+  YY  L  L+S+ FP        +PF W D F+   +       T   + +E   
Sbjct: 64  CSVLKRYYGQLHLLQSR-FPMGAGQEAAVPFTWTDIFSGSEV-------THEDIKFEEAS 115

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKS 163
           VL+NI AL S +  +   D++EG+K+A    Q +A  F YL+ 
Sbjct: 116 VLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLRE 158

This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of HD-PTP. The Bro1-like domain of HD-PTP can also bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. HD-PTP, and some other members of the BRO1_Alix_like superfamily including Alix, also have a V-shaped (V) domain. In the case of Alix, the V-domain contains a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in the V-domain superfamily. HD-PTP is encoded by the PTPN23 gene, a tumor suppressor gene candidate frequently absent in human kidney, breast, lung, and cervical tumors. This family also contains Drosophila Myopic which promotes epidermal growth factor receptor (EGFR) signaling, and Caenorhabditis elegans (enhancer of glp-1) EGO-2 which promotes Notch signaling. Length = 361

>gnl|CDD|185767 cd09244, BRO1_Rhophilin, Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 18/160 (11%)

Query: 9   LKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVI 68
           LK+  ++D ++P K+ I   +  D    +   +++  F+ LR A   +   + E+ +E++
Sbjct: 6   LKETKEIDFMEPFKDFILEHYSEDPSLYE---DEIADFTDLRQAM--RTPSRDEAGIELL 60

Query: 69  YSYYDHLVSLESKIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVC--SLAWERVCVLFN 124
           + YY+ L  +E + FP    + I F W D     SL G    +     S+A+E+  VLFN
Sbjct: 61  FEYYNQLYFVERRFFPPDRSLGIYFHWYD-----SLTG----VPSVQRSVAFEKASVLFN 111

Query: 125 IAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           I AL + I   Q   T+EG++ A    Q +AG FNYL+  
Sbjct: 112 IGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYLREN 151

This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different activities. The Drosophila knockout of Rhophilin-1 is embryonic lethal, suggesting an essential role in embryonic development. Roles of Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-actin in the absence of high levels of RhoA signaling activity. The isolated Bro1-like domain of Rhophilin-1 binds human immunodeficiency virus type 1 (HIV-1) nucleocapsid. This family lacks the V-shaped (V) domain found in many members of the BRO1_Alix _like superfamily. Length = 350

>gnl|CDD|185772 cd09249, BRO1_Rhophilin_2, Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2

 Score = 72.6 bits (178), Expect = 1e-15
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 20/161 (12%)

Query: 9   LKKPTDVDIIKPLKNLIALQFPND-NEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEV 67
           LK+  DVD   PLK+ I   +  D +E  D + + ++L    RT +      + E+ +E+
Sbjct: 6   LKETKDVDFSVPLKDFILEHYSEDGSEYEDEIADLMDLRQACRTPS------RDEAGVEL 59

Query: 68  IYSYYDHLVSLESKIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVC--SLAWERVCVLF 123
           + SY+  L  LE++ FP T  + I F W D+F           + V   +L  E+  +LF
Sbjct: 60  LMSYFSQLGFLENRFFPPTRQMGILFTWYDSFT---------GVPVSQQNLLLEKASILF 110

Query: 124 NIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           NI AL + I    +  T  GL+ A    Q +AG+ NYLK T
Sbjct: 111 NIGALYTQIGTRCNRQTQAGLESAVDAFQRAAGVLNYLKET 151

This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-actin in the absence of high levels of RhoA signaling activity. Rhophilin-2 lacks the V-shaped (V) domain found in many members of the BRO1_Alix_like superfamily. Length = 385

>gnl|CDD|185771 cd09248, BRO1_Rhophilin_1, Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1

 Score = 70.7 bits (173), Expect = 5e-15
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 9   LKKPTDVDIIKPLKNLIALQFPNDNEKLDI-LNEKLNLFSKLRTAAVWKVFEKHESSLEV 67
           LK+  ++D+  PLK LI+  F  D    +  + E  +L   +RT +      + E+ LE+
Sbjct: 6   LKETKELDLPTPLKELISEHFGEDGTSYEAEIRELEDLRQAMRTPS------RSEAGLEL 59

Query: 68  IYSYYDHLVSLESKIFP--ATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNI 125
           + +YY+ L  L+++ FP   ++ + F W D     SL G  +     +LA+E+  VLFNI
Sbjct: 60  LMAYYNQLCFLDARFFPPAKSLGLFFHWYD-----SLTG--VPAQQRALAFEKGSVLFNI 112

Query: 126 AALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLK 162
            AL + I   Q     EG + A    Q +AG F+ L+
Sbjct: 113 GALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLR 149

This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role in embryonic development. The isolated Bro1-like domain of Rhophilin-1 binds human immunodeficiency virus type 1 (HIV-1) nucleocapsid. Rhophilin-1 lacks the V-shaped (V) domain found in many members of the BRO1_Alix_ like superfamily. Length = 384

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
cd09248	384	BRO1_Rhophilin_1 Protein-interacting Bro1-like dom	100.0
cd09244	350	BRO1_Rhophilin Protein-interacting Bro1-like domai	100.0
cd09240	346	BRO1_Alix Protein-interacting, N-terminal, Bro1-li	100.0
cd09249	385	BRO1_Rhophilin_2 Protein-interacting Bro1-like dom	100.0
cd09239	361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	100.0
cd09241	355	BRO1_ScRim20-like Protein-interacting, N-terminal,	100.0
cd09242	348	BRO1_ScBro1_like Protein-interacting, N-terminal,	100.0
cd09246	353	BRO1_Alix_like_1 Protein-interacting, N-terminal,	100.0
PF03097	377	BRO1: BRO1-like domain; InterPro: IPR004328 The BR	100.0
cd09034	345	BRO1_Alix_like Protein-interacting Bro1-like domai	100.0
KOG2220|consensus	714		100.0
cd09243	353	BRO1_Brox_like Protein-interacting Bro1-like domai	99.92
cd09245	413	BRO1_UmRIM23-like Protein-interacting, Bro1-like d	99.89
cd09247	346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	99.78
KOG2220|consensus	714		98.15
KOG2002|consensus	1018		80.01

>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1

Probab=100.00  E-value=1.3e-48  Score=329.45  Aligned_cols=149  Identities=30%  Similarity=0.547  Sum_probs=141.1

Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhccC
Q psy17538          4 FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIF   83 (164)
Q Consensus         4 ~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp   83 (164)
                      ||+||+|+|.+|||.+||++||.++|+   ++|+.|++||.+|++||+++.  .+..++++++.|.+||+||+.|+.|||
T Consensus         1 mi~lplK~T~~vDl~~pL~~yI~~~Y~---q~~~~y~~dl~~l~~LR~~~~--~~~~~~sgle~L~~YY~qL~~Le~RFp   75 (384)
T cd09248           1 MIPLGLKETKELDLPTPLKELISEHFG---EDGTSYEAEIRELEDLRQAMR--TPSRSEAGLELLMAYYNQLCFLDARFF   75 (384)
T ss_pred             CCCCCCCcCCcCChHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhc--CCCCChhHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999999999999999999   889999999999999999854  567789999999999999999999999


Q ss_pred             CCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy17538         84 PAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYL  161 (164)
Q Consensus        84 ~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~~l  161 (164)
                      +++  ++|+|+|+|+|+.       .++++.++.|||+||||||||+|||+|+.++|.++||+|+||++||+|||||+||
T Consensus        76 ~~~~~~~v~FtW~Daf~~-------~~~~q~sl~FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L  148 (384)
T cd09248          76 PPAKSLGLFFHWYDSLTG-------VPAQQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLL  148 (384)
T ss_pred             CCcccccceeeeeccCCC-------CccccccHHHHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence            864  7899999999983       5789999999999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q psy17538        162 KST  164 (164)
Q Consensus       162 ~e~  164 (164)
                      +|+
T Consensus       149 ~e~  151 (384)
T cd09248         149 REN  151 (384)
T ss_pred             HHH
Confidence            985

This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i

>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains

Probab=100.00  E-value=1.7e-48  Score=327.32  Aligned_cols=149  Identities=31%  Similarity=0.627  Sum_probs=141.9

Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhccC
Q psy17538          4 FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIF   83 (164)
Q Consensus         4 ~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp   83 (164)
                      ||+||+|+|.+|||.+||++||.++|+   ++|+.|++||.+|++||++++  .+..++++++.|.+||+||+.|+.|||
T Consensus         1 mi~l~lK~T~~vd~~~~L~~yI~~~Y~---e~~~~y~~~l~~l~~LR~~~~--~~~~~~~g~~~L~~YY~qL~~le~RFp   75 (350)
T cd09244           1 MIPLGLKETKEIDFMEPFKDFILEHYS---EDPSLYEDEIADFTDLRQAMR--TPSRDEAGIELLFEYYNQLYFVERRFF   75 (350)
T ss_pred             CCCCCCCcCCcCChHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhh--CCCCChhHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999999999999999999   889999999999999999987  567789999999999999999999998


Q ss_pred             CCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy17538         84 PAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYL  161 (164)
Q Consensus        84 ~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~~l  161 (164)
                      +++  ++|.|+|+|+|++       .+++++++.||||||||||||+|||+|+.++|.+++|+|+||++||+|||+|+||
T Consensus        76 ~~~~~~~v~F~W~Ds~~~-------~~~~q~sl~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l  148 (350)
T cd09244          76 PPDRSLGIYFHWYDSLTG-------VPSVQRSVAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYL  148 (350)
T ss_pred             CccccccceeeeecccCC-------CccccccHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence            764  8899999999983       5789999999999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q psy17538        162 KST  164 (164)
Q Consensus       162 ~e~  164 (164)
                      +||
T Consensus       149 ~e~  151 (350)
T cd09244         149 REN  151 (350)
T ss_pred             HHh
Confidence            985

This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac

>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains

Probab=100.00  E-value=2.3e-47  Score=321.03  Aligned_cols=162  Identities=53%  Similarity=0.864  Sum_probs=150.7

Q ss_pred             CCCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhc
Q psy17538          2 AEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESK   81 (164)
Q Consensus         2 ~~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~r   81 (164)
                      ++||+||+|+|.+|||.+||++||.++|+++ ++|+.|++||++|++||+++++..++.++++++.+.+||+||..|+.|
T Consensus         1 ~~~l~iplK~t~~vd~~~~l~~~I~~~y~~~-~~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~r   79 (346)
T cd09240           1 ASFISVPLKKSSEVDLVKPLEKFIKNTYSSG-EEQADYKEAIKELNKLRNNAVCRPLDKHESSLELLLRYYDQLCAIEPK   79 (346)
T ss_pred             CCeeeccCcCCCcCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence            4799999999999999999999999999965 689999999999999999997555567789999999999999999999


Q ss_pred             cCCCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHH
Q psy17538         82 IFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFN  159 (164)
Q Consensus        82 fp~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~  159 (164)
                      ||.++  ++|+|+|+|+|+++++++++.++++.++.||++||||||||++|++|+.++|.++||+|+||++||+|||+|+
T Consensus        80 fp~~~~~~~v~F~W~d~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~  159 (346)
T cd09240          80 FPFSESQIQVTFTWKDAFDKGSLFGGSKKLALSSLGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFN  159 (346)
T ss_pred             CCCCcccccceeeeecccccccccCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH
Confidence            99865  8899999999998777766677899999999999999999999999999999999999999999999999999


Q ss_pred             HhhcC
Q psy17538        160 YLKST  164 (164)
Q Consensus       160 ~l~e~  164 (164)
                      ||+|+
T Consensus       160 ~l~e~  164 (346)
T cd09240         160 HLKET  164 (346)
T ss_pred             HHHHh
Confidence            99985

This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f

>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2

Probab=100.00  E-value=2.4e-47  Score=321.58  Aligned_cols=149  Identities=33%  Similarity=0.578  Sum_probs=141.0

Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhccC
Q psy17538          4 FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIF   83 (164)
Q Consensus         4 ~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp   83 (164)
                      ||+||+|+|.+|||.+||++||.++|+   ++|+.|++||.+|++||+++  +.+..++++++.|.+||+||+.|+.|||
T Consensus         1 ~i~lplK~T~~VD~~~pL~~yI~~~Y~---q~~~~y~~dl~~l~~LR~~~--~~~~~~~sg~e~L~~YY~qL~~Le~RFp   75 (385)
T cd09249           1 LIPLGLKETKDVDFSVPLKDFILEHYS---EDGSEYEDEIADLMDLRQAC--RTPSRDEAGVELLMSYFSQLGFLENRFF   75 (385)
T ss_pred             CCCCCCCcCCccChHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHh--cCCCCChhHHHHHHHHHHHHHHHHhhCC
Confidence            799999999999999999999999999   88999999999999999985  3667889999999999999999999999


Q ss_pred             CCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy17538         84 PAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYL  161 (164)
Q Consensus        84 ~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~~l  161 (164)
                      +++  ++|+|+|+|+|++       .++++.++.||++||||||||+|||+|+.++|.+++|+|+||.+||+|||+|+||
T Consensus        76 ~~~~~~~v~FtW~Dsf~~-------~~~~q~sl~fEkasVLFNigAl~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L  148 (385)
T cd09249          76 PPTRQMGILFTWYDSFTG-------VPVSQQNLLLEKASILFNIGALYTQIGTRCNRQTQAGLESAVDAFQRAAGVLNYL  148 (385)
T ss_pred             CCcccccceeeeeccCCC-------CccccccHHHHHHHHHHhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence            754  8899999999982       5789999999999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q psy17538        162 KST  164 (164)
Q Consensus       162 ~e~  164 (164)
                      +|+
T Consensus       149 ~e~  151 (385)
T cd09249         149 KET  151 (385)
T ss_pred             HHh
Confidence            985

This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=100.00  E-value=1.2e-46  Score=318.04  Aligned_cols=150  Identities=29%  Similarity=0.476  Sum_probs=141.7

Q ss_pred             CCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhcc
Q psy17538          3 EFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKI   82 (164)
Q Consensus         3 ~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rf   82 (164)
                      |||+||+|+|.+|||.+||++||.++|+   ++|+.|++||++|++||++++  .+..++++++.|.+||+||+.|+.||
T Consensus         7 p~l~iplK~t~~vd~~~~L~~~I~~~y~---~~~~~~~~~l~~l~~LR~~~~--~~~~~~~~~~~l~~Yy~qL~~l~~rf   81 (361)
T cd09239           7 PMLWLQLKSSGEFTFQPALKKYILENYG---EDPELYSEELKSLEQLRQEAV--NPPRDFEGCSVLKRYYGQLHLLQSRF   81 (361)
T ss_pred             CccccCCCCCCCCchHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHHHHHHHhcC
Confidence            8999999999999999999999999999   889999999999999999987  45667899999999999999999999


Q ss_pred             CCCC---CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHH
Q psy17538         83 FPAT---VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFN  159 (164)
Q Consensus        83 p~~~---~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~  159 (164)
                      |++.   ++|+|+|+|+|++       .++++.++.||++||||||||+|||+|+.++|.++||+|+||++||+|||+|+
T Consensus        82 p~~~~~~~~v~F~W~d~~~~-------~~~~~~~l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~  154 (361)
T cd09239          82 PMGAGQEAAVPFTWTDIFSG-------SEVTHEDIKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFA  154 (361)
T ss_pred             CCCccccccceeeeecccCC-------CchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence            9863   6899999999973       57789999999999999999999999999999999999999999999999999


Q ss_pred             HhhcC
Q psy17538        160 YLKST  164 (164)
Q Consensus       160 ~l~e~  164 (164)
                      ||+|+
T Consensus       155 ~l~e~  159 (361)
T cd09239         155 YLREH  159 (361)
T ss_pred             HHHHh
Confidence            99985

This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l

>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins

Probab=100.00  E-value=2.9e-45  Score=309.21  Aligned_cols=151  Identities=31%  Similarity=0.503  Sum_probs=142.1

Q ss_pred             CCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhcc
Q psy17538          3 EFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKI   82 (164)
Q Consensus         3 ~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rf   82 (164)
                      +||+||+|+|.+|||.+||++||.++|+   ++|+.|++||++|++||++++  .+.+++++++.+.+||.||+.|+.||
T Consensus         1 ~~l~ip~K~t~~vd~~~~l~~~I~~~y~---~~~~~~~~dl~~l~~lR~~~~--~~~~~~~~~~~l~~Yy~~L~~l~~rf   75 (355)
T cd09241           1 NLLSIPFKRTLPVDLKDALRNYISNHYF---QTPSSFEDDLAEIDKLRNDAI--NPEPSVNGLSLLKEYYAQLVVLSKKF   75 (355)
T ss_pred             CcCccCCCcCCcCCHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhh--CCCCChhHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999   889999999999999999997  44779999999999999999999999


Q ss_pred             CCCCCccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy17538         83 FPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLK  162 (164)
Q Consensus        83 p~~~~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~~l~  162 (164)
                      |  +.+|+|+|+|+|++++    ..++++.++.||++|||||+||+|||+|..++|.+++|+|+||++||+|||+|+||+
T Consensus        76 p--~~~i~F~W~d~~~~~~----~~~~~~~~l~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~  149 (355)
T cd09241          76 P--DDQLEFTWYPTLGYKS----SGPVSLSSLKFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYIL  149 (355)
T ss_pred             C--CcCCceeeecccCCCC----CCceeeccHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9  6889999999998631    257899999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q psy17538        163 ST  164 (164)
Q Consensus       163 e~  164 (164)
                      |+
T Consensus       150 ~~  151 (355)
T cd09241         150 QH  151 (355)
T ss_pred             Hh
Confidence            85

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp

>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins

Probab=100.00  E-value=3.1e-45  Score=308.35  Aligned_cols=150  Identities=32%  Similarity=0.521  Sum_probs=141.8

Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhccC
Q psy17538          4 FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKIF   83 (164)
Q Consensus         4 ~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp   83 (164)
                      ||+||+|+|.+|||.+||++||.++|+   ++|+.|++||++|++||++++  .+..++++++.+.+||+||+.|+.|||
T Consensus         1 ~l~lplK~t~~vd~~~~L~~~I~~~y~---~~~~~~~~~l~~l~~lR~~~~--~~~~~~~~~~~l~~Yy~qL~~l~~rfp   75 (348)
T cd09242           1 LISLPLKDTEEVDWKKPLSSYLKRSYG---SSTFYYEEEIAEFDRLRQDAN--GVLADETGRDLLYKYYGQLELLELRFP   75 (348)
T ss_pred             CCCCCCCcCCccChHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhcC
Confidence            799999999999999999999999999   889999999999999999997  345589999999999999999999999


Q ss_pred             CCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy17538         84 PAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYL  161 (164)
Q Consensus        84 ~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~~l  161 (164)
                      +++  .+|+|+|+|+|++      +.++++.++.||++|||||+|++||++|..++|.+++|+|+||++||+|||+|+||
T Consensus        76 ~~~~~~~v~F~W~d~~~~------~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l  149 (348)
T cd09242          76 FNNKELKVDFTWYDAFYK------SKKVKQHSLAFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYI  149 (348)
T ss_pred             CCCccccceeeeeecCCC------CCceeecchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence            864  8899999999984      36889999999999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q psy17538        162 KST  164 (164)
Q Consensus       162 ~e~  164 (164)
                      +|+
T Consensus       150 ~e~  152 (348)
T cd09242         150 NEN  152 (348)
T ss_pred             HHh
Confidence            975

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the

>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=100.00  E-value=1.2e-44  Score=305.23  Aligned_cols=151  Identities=30%  Similarity=0.524  Sum_probs=139.5

Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccC-CChhhHHHHHHHHHHHHHhHhcc
Q psy17538          4 FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFE-KHESSLEVIYSYYDHLVSLESKI   82 (164)
Q Consensus         4 ~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~-~~~~~~~~l~~Yy~qL~~l~~rf   82 (164)
                      ||+||+|+|.+|||.+||++||.++|++  ++|+.|++||.+|++||++++  .+. .++++++.+.+||+||+.|+.||
T Consensus         1 ~l~ip~K~t~~vd~~~~L~~~I~~~y~~--~~~~~~~~~l~~l~~LR~~~~--~~~~~~~~~~~~l~~Yy~~L~~l~~rf   76 (353)
T cd09246           1 MLSIHRKKTETVDLVSPLRAYISETYSE--REAQDAEDDLAELQQLRSEVR--TLQEKHAASRELLLRYYRALCAVESRF   76 (353)
T ss_pred             CCCCCCCcccccchHhHHHHHHHHHcCC--cCHHHHHHHHHHHHHHHHHhh--cCCCCChhHHHHHHHHHHHHHHHHccC
Confidence            7999999999999999999999999994  358999999999999999987  333 35789999999999999999999


Q ss_pred             CCCC----CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHH
Q psy17538         83 FPAT----VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIF  158 (164)
Q Consensus        83 p~~~----~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f  158 (164)
                      |+++    .+|+|+|+|+|++      +.++++.++.||++|||||+||+|||+|+.++|.+++|+|+||++||+|||+|
T Consensus        77 p~~~~~~~~~v~F~W~d~~~~------~~~~~~~sl~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F  150 (353)
T cd09246          77 PISEESGHARVSFSWYDAFRP------HRKATQANVHFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAF  150 (353)
T ss_pred             CCCcccccccceeEeeccCCC------CcceeecchHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Confidence            9863    6899999999984      36889999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q psy17538        159 NYLKST  164 (164)
Q Consensus       159 ~~l~e~  164 (164)
                      +||+|+
T Consensus       151 ~~l~e~  156 (353)
T cd09246         151 AHLRDK  156 (353)
T ss_pred             HHHHHh
Confidence            999975

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro

>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome

Probab=100.00  E-value=9.6e-41  Score=282.58  Aligned_cols=151  Identities=42%  Similarity=0.667  Sum_probs=128.7

Q ss_pred             CCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhcc-CCChhhHHHHHHHHHHHHHhHhc
Q psy17538          3 EFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVF-EKHESSLEVIYSYYDHLVSLESK   81 (164)
Q Consensus         3 ~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~-~~~~~~~~~l~~Yy~qL~~l~~r   81 (164)
                      |||+||+|+|.++||.++|++||.++|+   ++|+.|+++|+++++||++++  .+ ++++++++.+.+||.||..|+.|
T Consensus         1 ~~~~lplK~t~~vd~~~~l~~~i~~~y~---~~~~~~~~~l~~l~~lR~~~~--~~~~~~~~~~~~l~~Y~~~L~~l~~~   75 (377)
T PF03097_consen    1 PMLSLPLKKTKEVDLKKPLKKYISSHYG---EDPDSFDEDLKELDKLRQDAR--NPQSPSESGLKLLEEYYPQLESLEKR   75 (377)
T ss_dssp             ---------BEEE-CHHHHHHHHHHHCS---SCCHCCHHHHHHHHHHHHHHH--TSS-SSHHHHHHHHHHHHHHHHHCCC
T ss_pred             CcCCCCCCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHh--ccCCCchhHHHHHHHHHHHHHHHHHh
Confidence            7999999999999999999999999998   889999999999999999997  44 78899999999999999999999


Q ss_pred             cCCCCCccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy17538         82 IFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYL  161 (164)
Q Consensus        82 fp~~~~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~~l  161 (164)
                      ||...++|.|+|+|+|.+      +.+++++++.||++|||||+|++|+++|+.++|.+++|+|+|+++||+|||+|+||
T Consensus        76 ~p~~~~~i~F~W~d~~~~------~~~~~~~~~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l  149 (377)
T PF03097_consen   76 FPSDQIQISFTWSDSLST------GKPVSQSSLAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYL  149 (377)
T ss_dssp             SCSSCCTT-EEEE-TTST------TSEEEESSHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccceeeEeeeccccC------CCcccchhhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Confidence            995447899999999964      36899999999999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q psy17538        162 KST  164 (164)
Q Consensus       162 ~e~  164 (164)
                      +++
T Consensus       150 ~~~  152 (377)
T PF03097_consen  150 REN  152 (377)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            873

The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains

Probab=100.00  E-value=1.2e-37  Score=261.11  Aligned_cols=151  Identities=35%  Similarity=0.560  Sum_probs=135.5

Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHhhCCCCcc-cHHHHHHHHHHHHHHHHHHhhhccC--CChhhHHHHHHHHHHHHHhHh
Q psy17538          4 FLAVPLKKPTDVDIIKPLKNLIALQFPNDNE-KLDILNEKLNLFSKLRTAAVWKVFE--KHESSLEVIYSYYDHLVSLES   80 (164)
Q Consensus         4 ~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~-~~~~~~~dl~~l~~LR~~~~~~~~~--~~~~~~~~l~~Yy~qL~~l~~   80 (164)
                      ||++|+|+|.++||..+|++||.++|+   + +++.|+++|+++++||++++....+  ..+++++.|.+||.+|..|+.
T Consensus         1 ~i~~plk~t~~vd~~~~l~~~i~~~~~---~~~~~~~~~~l~~~~~lR~~~~~~~~~~~~~~~~~~~l~~Y~~~L~~l~~   77 (345)
T cd09034           1 FIGLPLKKTKEVDVKVPLSKFIPKNYG---ELEATAVEDLIEKLSKLRNNIVTEQNNDTTCENLLEALKEYLPYLLGLEK   77 (345)
T ss_pred             CCCCCCCCCceeeechhhHHHhhHhhC---cccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999   5 7899999999999999998733212  138899999999999999999


Q ss_pred             ccCCCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCC-hhhHHHHHHHHHHHHHH
Q psy17538         81 KIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDT-DEGLKLAAKMLQSSAGI  157 (164)
Q Consensus        81 rfp~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~-~~~~K~A~~~fq~AAg~  157 (164)
                      |||.+.  .+++|+|+|+|++      +++... ++.||++|||||+|++||++|..+++.+ ++|+|.||++||+|||+
T Consensus        78 ~~~~~~~~~~i~F~W~d~~~~------~~~~~~-~l~fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~  150 (345)
T cd09034          78 KLPFQKLRDNVEFTWTDSFDT------KKESAT-SLRYELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGY  150 (345)
T ss_pred             cCCcccccccceeEeecccCC------Ccchhh-hHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence            999643  7899999999985      244445 9999999999999999999999999988 89999999999999999


Q ss_pred             HHHhhcC
Q psy17538        158 FNYLKST  164 (164)
Q Consensus       158 f~~l~e~  164 (164)
                      |+||+++
T Consensus       151 F~~l~~~  157 (345)
T cd09034         151 FEYLKEH  157 (345)
T ss_pred             HHHHHHh
Confidence            9999874

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to

>KOG2220|consensus

Probab=100.00  E-value=9.7e-33  Score=249.13  Aligned_cols=152  Identities=43%  Similarity=0.664  Sum_probs=138.9

Q ss_pred             CCCC-CCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhH
Q psy17538          1 MAEF-LAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLE   79 (164)
Q Consensus         1 m~~~-l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~   79 (164)
                      |..+ +++|+|+|.++||.+||.+||...|+   +.+....++++++.+||..++  ....+.++.+.+.+||.||+.|+
T Consensus         1 M~~~~~~~~lK~t~e~d~~~~l~~~i~~~y~---~~~~~~~~~i~~~~~lR~~a~--~~~~~~~~~~~l~~yy~qL~~l~   75 (714)
T KOG2220|consen    1 METLPLPIPLKKTSEVDFLKPLSKLIQLSYG---ESQENRNDAIEKLEKLRNNAN--GVPKPSEGLEVLKRYYGQLCYLE   75 (714)
T ss_pred             CCccccCcccccCCccchhhhHHHHHHHhcC---CchhhHHHHHHHHHHHHhccc--cCCcchhhhHHHHHHHHHHHHHH
Confidence            7766 99999999999999999999999999   666666799999999999997  33467889999999999999999


Q ss_pred             hccCCCCCccc-eeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHH
Q psy17538         80 SKIFPATVNIP-FRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIF  158 (164)
Q Consensus        80 ~rfp~~~~~i~-F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f  158 (164)
                      .|||+++.+++ |+|+|+|.++     ..++++.+|.||++|||||||++|+++|+.++|.+.+|+|.||++||.|||||
T Consensus        76 ~r~p~~~~~~~~F~W~d~~~~~-----~~~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq~aagaf  150 (714)
T KOG2220|consen   76 SRFPMSENEIEEFTWKDAFDSG-----AKKVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQAAAGAF  150 (714)
T ss_pred             HhcCcccccccceeeeecccCC-----ccceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Confidence            99999764444 9999999862     37899999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q psy17538        159 NYLK  162 (164)
Q Consensus       159 ~~l~  162 (164)
                      .|++
T Consensus       151 ~~l~  154 (714)
T KOG2220|consen  151 RYLS  154 (714)
T ss_pred             Hhhc
Confidence            9998

>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins

Probab=99.92  E-value=3.3e-24  Score=180.76  Aligned_cols=143  Identities=20%  Similarity=0.229  Sum_probs=111.3

Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhh--ccCCC-hhhHHHHHHHHHHHHHhHh
Q psy17538          4 FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWK--VFEKH-ESSLEVIYSYYDHLVSLES   80 (164)
Q Consensus         4 ~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~--~~~~~-~~~~~~l~~Yy~qL~~l~~   80 (164)
                      |=+.|||.|.+++|.  ++    ....    + ....+-+.++..-|..++..  ++..+ .+....+.+|...|.+|..
T Consensus         2 ~~r~~~k~t~~~~f~--~~----~~~~----~-~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~a~~~Yl~ll~g~~~   70 (353)
T cd09243           2 FHRNPLKATAPVKFD--LK----GVAT----T-PAASKLCSDLRTARARLLELLSDPSNDVDTVKTAFNAYLSLLQGFIL   70 (353)
T ss_pred             CCCCccccccccccc--cc----cccC----C-hhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            346899999999995  22    2222    2 26778889999999988754  33334 3467899999999999975


Q ss_pred             ccCC--CC----CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhC----CCCChhhHHHHHHH
Q psy17538         81 KIFP--AT----VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQ----SLDTDEGLKLAAKM  150 (164)
Q Consensus        81 rfp~--~~----~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~----~~~~~~~~K~A~~~  150 (164)
                      -..-  ++    -.|.|+|+|+|.+      +.++++.++.||++|||||||++|+++|+..    ++ ++||+|+||++
T Consensus        71 ~~d~~~~~~~l~~~v~F~W~dsl~~------~~~~~q~sl~fEk~sVLfNigal~s~~As~~~~~~~~-s~e~~K~A~~~  143 (353)
T cd09243          71 ALDGKTQESKLRYLINFKWTDSLLG------NEPSVQQDAIFELASMLFNVALWYTKHASKLAGKEDI-TEDEAKDVHKS  143 (353)
T ss_pred             cccccCCccccceeeeEEEECCCCC------CCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CcHHHHHHHHH
Confidence            3211  11    5799999999963      3688999999999999999999998876554    34 44999999999


Q ss_pred             HHHHHHHHHHhhcC
Q psy17538        151 LQSSAGIFNYLKST  164 (164)
Q Consensus       151 fq~AAg~f~~l~e~  164 (164)
                      ||+|||+|+||+|+
T Consensus       144 fq~AAG~F~~l~e~  157 (353)
T cd09243         144 LRTAAGIFQFVKEN  157 (353)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999985

This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (

>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains

Probab=99.89  E-value=1.4e-22  Score=174.09  Aligned_cols=102  Identities=25%  Similarity=0.381  Sum_probs=88.7

Q ss_pred             hhhHHHHHHHHHHHHHhHhccCCCC----CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhC-
Q psy17538         62 ESSLEVIYSYYDHLVSLESKIFPAT----VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQ-  136 (164)
Q Consensus        62 ~~~~~~l~~Yy~qL~~l~~rfp~~~----~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~-  136 (164)
                      .+.++.|.+||.+|..|+.+||.++    ..|.|+|+|+|..++ ..++..+++.++.||+++||||+|++||++|... 
T Consensus        57 ~~~~~aL~~Ylp~L~~l~~~~~~~~~~l~~~i~F~W~~tl~~~~-~~~~~~~~~~sl~fE~a~VLfnla~l~S~~A~~~l  135 (413)
T cd09245          57 LTVVKALEEYLPYLLAIDACLSHDELILKSEPTFEWRTTLSSTS-GRESPRLPLPGLHYELAFVLLTYAYALSNLARSIL  135 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCcchhcccccceeEeecccccCC-CCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5688999999999999999999753    469999999998543 1222458999999999999999999999999983 


Q ss_pred             --------C--------CCChhhHHHHHHHHHHHHHHHHHhhcC
Q psy17538        137 --------S--------LDTDEGLKLAAKMLQSSAGIFNYLKST  164 (164)
Q Consensus       137 --------~--------~~~~~~~K~A~~~fq~AAg~f~~l~e~  164 (164)
                              +        +.++||+|.||++||+|||||+||+++
T Consensus       136 ~~~~~~~~~~~is~~~~~~~~e~lK~A~~~l~~AAGvf~~L~~~  179 (413)
T cd09245         136 APLGAYETDRSISDASRKQRDERLKAATKLLCKAAGIFDYLATR  179 (413)
T ss_pred             cccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    2        677999999999999999999999874

This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=99.78  E-value=5.4e-19  Score=148.99  Aligned_cols=96  Identities=26%  Similarity=0.331  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHhHhccCC--CCCccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCCh
Q psy17538         64 SLEVIYSYYDHLVSLESKIFP--ATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTD  141 (164)
Q Consensus        64 ~~~~l~~Yy~qL~~l~~rfp~--~~~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~  141 (164)
                      .+..|..|...|..+..++-.  -..+++|+|+|+|++.   .++..+++.++.||++|||||+|++||++|..+.+.  
T Consensus        59 yl~~L~~~~~~L~~~~~~~~~~~l~~~i~F~W~~~l~~~---~~~~~~~~~sl~fE~~~vLfn~aa~~s~~A~~~~~~--  133 (346)
T cd09247          59 YLPYLEGYLPALENLVNHRDKVQLNEQLSFRWTSGLGSS---KGPKAFQSDSLRFELGMVLFLYGAALRERASEVLPT--  133 (346)
T ss_pred             HHHHHHHHHHhhccCCccchHHhhcccCceeeecccCCC---CCCceeeccchHHHHHHHHHHHHHHHHHHHHHhccH--
Confidence            455566666666666655410  0268999999999841   012456788999999999999999999999987664  


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcC
Q psy17538        142 EGLKLAAKMLQSSAGIFNYLKST  164 (164)
Q Consensus       142 ~~~K~A~~~fq~AAg~f~~l~e~  164 (164)
                      ||+|.||++||+|||||+||+++
T Consensus       134 e~~K~A~~~l~~AAG~f~~l~~~  156 (346)
T cd09247         134 EDFKEAATHLRRAAGVFEFLAHD  156 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999874

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in

>KOG2220|consensus

Probab=98.15  E-value=4.7e-06  Score=76.49  Aligned_cols=147  Identities=19%  Similarity=0.160  Sum_probs=109.1

Q ss_pred             CCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhc-
Q psy17538          3 EFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESK-   81 (164)
Q Consensus         3 ~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~r-   81 (164)
                      +|+++.++++..+++..+|...|.-++..  ++++.|+..+..|+..|....  .+..+.-+.+.+.. +.++.....+ 
T Consensus       102 ~~~~L~fEka~vLfni~~l~s~iaa~~~~--~~~d~~k~a~~~fq~aagaf~--~l~~~~~~~~~~~d-~~~~~l~~~~~  176 (714)
T KOG2220|consen  102 TQISLGFEKACVLFNIAALYSQIAAHQSR--ETVDGYKAAIAHFQAAAGAFR--YLSRDALGVEPLVD-LSSLTLVFLRF  176 (714)
T ss_pred             eeccchhhHHHHHHHHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHHHHHH--hhcHHhcCcccccc-cCHHHHHHHHH
Confidence            58889999999999999999999999984  467899999999999887654  22222333333444 2333322222 


Q ss_pred             cCCCC-CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHH
Q psy17538         82 IFPAT-VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNY  160 (164)
Q Consensus        82 fp~~~-~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~~  160 (164)
                      ++... -.+-|  +++..+       .+-.+--..+++.+++||.+|++.++++..+|.+.+++..+.--++.++|++.|
T Consensus       177 l~~AqAQec~f--~ks~~d-------~~~~~~iaKis~q~~~fy~~Al~~~~~~~~~~~~~~w~~~~~~k~~~~~~v~~~  247 (714)
T KOG2220|consen  177 LMLAQAQECFF--YKSLTD-------NPKPSIIAKLSAQVVLFYEEALKAQIGARADRITKEWLTLVAAKFARFAGVAYY  247 (714)
T ss_pred             hhHHhhchhee--ehhhcC-------CcchHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            23212 22233  777763       344566677999999999999999999999999999999999999999999998


Q ss_pred             hhc
Q psy17538        161 LKS  163 (164)
Q Consensus       161 l~e  163 (164)
                      +..
T Consensus       248 ~~~  250 (714)
T KOG2220|consen  248 YQS  250 (714)
T ss_pred             HHH
Confidence            764

>KOG2002|consensus

Probab=80.01  E-value=4.4  Score=38.87  Aligned_cols=45  Identities=27%  Similarity=0.295  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHhC---CCCChhhHHHHHHHHHHHHHHHHHhhcC
Q psy17538        120 CVLFNIAALQSAIAQAQ---SLDTDEGLKLAAKMLQSSAGIFNYLKST  164 (164)
Q Consensus       120 ~vLfNiaa~~s~~a~~~---~~~~~~~~K~A~~~fq~AAg~f~~l~e~  164 (164)
                      .|+||+|.++.++|...   .+.+.+.+..|..-+..|--+|++|+++
T Consensus       751 ~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~  798 (1018)
T KOG2002|consen  751 SVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN  798 (1018)
T ss_pred             hHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            49999999999999885   5678899999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
2oew_A	380	Structure Of AlixAIP1 BRO1 DOMAIN Length = 380		4e-33
2oev_A	705	Crystal Structure Of AlixAIP1 Length = 705		6e-33
2xs1_A	704	Crystal Structure Of Alix In Complex With The Sivma		6e-33
2r02_A	697	Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE H		3e-32
3rau_A	363	Crystal Structure Of The Hd-Ptp Bro1 Domain Length		4e-05

>pdb|2OEW|A Chain A, Structure Of AlixAIP1 BRO1 DOMAIN Length = 380

Iteration: 1
 Score =  137 bits (344), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MA F++V LKK ++VD+ KPL   I   +P+  E+           SKLR AAV +  +K
Sbjct: 22  MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK 81
Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
           HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct: 82  HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 140
Query: 118 RVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
           + CVLFN              D DEGLK+AAK  Q ++G F ++K T
Sbjct: 141 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKET 187

>pdb|2OEV|A Chain A, Crystal Structure Of AlixAIP1 Length = 705

Iteration: 1
 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MA F++V LKK ++VD+ KPL   I   +P+  E+           SKLR AAV +  +K
Sbjct: 8   MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK 67
Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
           HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct: 68  HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 126
Query: 118 RVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
           + CVLFN              D DEGLK+AAK  Q ++G F ++K T
Sbjct: 127 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKET 173

>pdb|2XS1|A Chain A, Crystal Structure Of Alix In Complex With The Sivmac239 Pykevtedl Late Domain Length = 704

Iteration: 1
 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MA F++V LKK ++VD+ KPL   I   +P+  E+           SKLR AAV +  +K
Sbjct: 7   MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK 66
Query: 61  HESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWE 117
           HE +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E
Sbjct: 67  HEGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYE 125
Query: 118 RVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
           + CVLFN              D DEGLK+AAK  Q ++G F ++K T
Sbjct: 126 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKET 172

>pdb|2R02|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1 Ypltsl Late Domain Length = 697

Iteration: 1
 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 97/166 (58%), Gaps = 4/166 (2%)
Query: 2   AEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKH 61
           A F++V LKK ++VD+ KPL   I   +P+  E+           SKLR AAV +  +KH
Sbjct: 1   ATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKH 60
Query: 62  ESSLEVIYSYYDHLVSLESKIFPATVN---IPFRWKDAFNKGSLFGGRISLTVCSLAWER 118
           E +LE +  YYD + S+E K FP + N   + F WKDAF+KGSLFGG + L + SL +E+
Sbjct: 61  EGALETLLRYYDQICSIEPK-FPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK 119
Query: 119 VCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLKST 164
            CVLFN              D DEGLK+AAK  Q ++G F ++K T
Sbjct: 120 SCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKET 165

>pdb|3RAU|A Chain A, Crystal Structure Of The Hd-Ptp Bro1 Domain Length = 363

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 23/172 (13%)
Query: 2   AEFLAVP--------LKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAA 53
            EF AVP        LK+  D      +K  +     N  E  +  NE+L     LR  A
Sbjct: 1   GEFEAVPRMPMIWLDLKEAGDFHFQPAVKKFV---LKNYGENPEAYNEELKKLELLRQNA 57
Query: 54  VWKVFEKHESSLEVIYSYYDHLVSLESKIFPAT---VNIPFRWKDAFNKGSLFGGRISLT 110
           V +V    E    V+  Y   L  L+S++   +     +P  W +      +F G+ S+ 
Sbjct: 58  V-RVPRDFEGC-SVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTE------IFSGK-SVA 108
Query: 111 VCSLAWERVCVLFNXXXXXXXXXXXXXXDTDEGLKLAAKMLQSSAGIFNYLK 162
              + +E+ C+L+N               ++EG+K++    Q +AG F YL+
Sbjct: 109 HEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLR 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
3c3r_A	380	Programmed cell death 6-interacting protein; ALIX	3e-43
2xs1_A	704	Programmed cell death 6-interacting protein; prote	7e-43
1zb1_A	392	BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking	8e-35
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	1e-29
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	2e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A Length = 380

 Score =  146 bits (368), Expect = 3e-43
 Identities = 77/166 (46%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MA F++V LKK ++VD+ KPL   I   +P+  E+           SKLR AAV +  +K
Sbjct: 22  MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK 81

Query: 61  HESSLEVIYSYYDHLVSLESKIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWER 118
           HE +LE +  YYD + S+E K   +   + + F WKDAF+KGSLFGG + L + SL +E+
Sbjct: 82  HEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK 141

Query: 119 VCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
            CVLFN AAL S IA  Q+LD DEGLK+AAK  Q ++G F ++K T
Sbjct: 142 SCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKET 187

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score =  149 bits (377), Expect = 7e-43
 Identities = 77/166 (46%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
           MA F++V LKK ++VD+ KPL   I   +P+  E+           SKLR AAV +  +K
Sbjct: 7   MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK 66

Query: 61  HESSLEVIYSYYDHLVSLESKIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWER 118
           HE +LE +  YYD + S+E K   +   + + F WKDAF+KGSLFGG + L + SL +E+
Sbjct: 67  HEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK 126

Query: 119 VCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
            CVLFN AAL S IA  Q+LD DEGLK+AAK  Q ++G F ++K T
Sbjct: 127 SCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKET 172

>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae} Length = 392

 Score =  124 bits (311), Expect = 8e-35
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 9/166 (5%)

Query: 1   MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEK 60
                 + LK    +D  K L + +   + +   +     +  +    LR  A  +    
Sbjct: 7   KPYLFDLKLKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGE--LA 64

Query: 61  HESSLEVIYSYYDHLVSLESKIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWER 118
             S  E    YY  L  L  ++      + + F W DA    +  G + +    +LA+E+
Sbjct: 65  PSSLSEQNLKYYSFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQ--HTLAFEK 122

Query: 119 VCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
            C LFNIA + + IA+      +E  K +   L  +   F YL   
Sbjct: 123 SCTLFNIAVIFTQIAREN---INEDYKNSIANLTKAFSCFEYLSEN 165

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens} Length = 363

 Score =  110 bits (275), Expect = 1e-29
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 15/164 (9%)

Query: 4   FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHES 63
            + + LK+  D      +K  +   +    E  +  NE+L     LR  AV     +   
Sbjct: 11  MIWLDLKEAGDFHFQPAVKKFVLKNY---GENPEAYNEELKKLELLRQNAVRV--PRDFE 65

Query: 64  SLEVIYSYYDHLVSLESKIF---PATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVC 120
              V+  Y   L  L+S++         +P  W + F+  S+           + +E+ C
Sbjct: 66  GCSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSGKSV-------AHEDIKYEQAC 118

Query: 121 VLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFNYLKST 164
           +L+N+ AL S +       ++EG+K++    Q +AG F YL+  
Sbjct: 119 ILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREH 162

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A Length = 376

 Score = 91.0 bits (225), Expect = 2e-22
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 15/166 (9%)

Query: 4   FLAVPLKK--PTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKH 61
           F   PLK   P   +    +    A +  ND          L LF+ L            
Sbjct: 7   FHRNPLKATAPVSFNYYGVVTGPSASKICNDLRSS--RARLLELFTDLSCNP-------- 56

Query: 62  ESSLEVIYSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCV 121
           E       SY+  L    + +  +T     R+   F       G++        +E + +
Sbjct: 57  EMMKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISM 116

Query: 122 LFNIAALQSAIAQAQSLD---TDEGLKLAAKMLQSSAGIFNYLKST 164
            FN+A   +  A   +     T++  K   + L+ +AGIF +LK +
Sbjct: 117 GFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKES 162

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 3e-08
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 27/106 (25%)

Query: 2   AEFLAVPLKK-PTDVDIIKPLK-NLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFE 59
            ++L    +  P +V    P + ++IA          + + + L  +   +     K+  
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIA----------ESIRDGLATWDNWKHVNCDKLTT 357

Query: 60  KHESSLEVIYS-----YYDHLVSLESKIFPATVNIPFR-----WKD 95
             ESSL V+        +D L      +FP + +IP       W D
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLS-----VFPPSAHIPTILLSLIWFD 398

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 39/153 (25%)

Query: 13  TDVDIIKPLKNLIALQFPNDNEKLDIL-NEKLNLFS---KLRTAAVWKVFEKHESSLEVI 68
           +   +++ L+ L+    PN   + D   N KL + S   +LR     K    +E+ L V+
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVL 250

Query: 69  YSYYDHLVSLESKIFPATVNIPFRWKDAFNKGSLFGGRISLTVCSLAWER-VCVLFNIAA 127
                + V   +K +           +AFN       +I LT       R   V   ++A
Sbjct: 251 ----LN-VQ-NAKAW-----------NAFN----LSCKILLTT------RFKQVTDFLSA 283

Query: 128 LQ----SAIAQAQSLDTDEGLKLAAKMLQSSAG 156
                 S    + +L  DE   L  K L     
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	100.0
3c3r_A	380	Programmed cell death 6-interacting protein; ALIX	100.0
2xs1_A	704	Programmed cell death 6-interacting protein; prote	100.0
1zb1_A	392	BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking	100.0
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	99.96

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.9e-46  Score=313.51  Aligned_cols=150  Identities=25%  Similarity=0.474  Sum_probs=142.0

Q ss_pred             CCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhcc
Q psy17538          3 EFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESKI   82 (164)
Q Consensus         3 ~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rf   82 (164)
                      |||++|+|+|.++||.+||++||.++|+   ++|+.|++||++|++||++++  .+..++++++.|.+||.||+.|+.||
T Consensus        10 pmi~l~lK~t~~vd~~~~L~~~I~~~y~---e~~~~~~~~l~~l~~LR~~~~--~~~~~~~g~~~L~~Yy~qL~~l~~rf   84 (363)
T 3rau_A           10 PMIWLDLKEAGDFHFQPAVKKFVLKNYG---ENPEAYNEELKKLELLRQNAV--RVPRDFEGCSVLRKYLGQLHYLQSRV   84 (363)
T ss_dssp             CCCCCCCCCEEEECCHHHHHHHHHHTTC---SCTTTTHHHHHHHHHHHHHHH--TCCSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CccCCCCCcCCCCChHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            8999999999999999999999999999   889999999999999999987  45778999999999999999999999


Q ss_pred             CCCC---CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHH
Q psy17538         83 FPAT---VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFN  159 (164)
Q Consensus        83 p~~~---~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~  159 (164)
                      |++.   .+|.|+|+|+|++       +++++.++.||++|||||||++|||+|+.++|.+++|+|.||++||+|||+|+
T Consensus        85 p~~~~~~~~i~F~W~ds~~~-------~~~~~~sl~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~  157 (363)
T 3rau_A           85 PMGSGQEAAVPVTWTEIFSG-------KSVAHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFA  157 (363)
T ss_dssp             CCSTTCTTCCCEEEECTTTC-------CEEEESCHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccccceeEEeecccCC-------ccccccCHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence            9753   6899999999983       57899999999999999999999999999999999999999999999999999


Q ss_pred             HhhcC
Q psy17538        160 YLKST  164 (164)
Q Consensus       160 ~l~e~  164 (164)
                      ||+++
T Consensus       158 ~l~~~  162 (363)
T 3rau_A          158 YLREH  162 (363)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99874

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A

Probab=100.00  E-value=5.5e-45  Score=308.66  Aligned_cols=164  Identities=47%  Similarity=0.752  Sum_probs=150.4

Q ss_pred             CCCCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHh
Q psy17538          1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLES   80 (164)
Q Consensus         1 m~~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~   80 (164)
                      |++||++|+|+|.+|||.++|++||.++|+.+.++|+.|+++|++|++||++++...++.++++++.|.+||.||..|+.
T Consensus        22 m~~~l~~plK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~~~~~~~~~~~~~~~~L~~Y~~~L~~l~~  101 (380)
T 3c3r_A           22 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEP  101 (380)
T ss_dssp             -CCCCCCCCCCBCCCCCHHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHHHHTT
T ss_pred             hccccCCCCCCCCcCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHHHHHHc
Confidence            77999999999999999999999999999844356889999999999999999754567788899999999999999999


Q ss_pred             ccCCCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHH
Q psy17538         81 KIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIF  158 (164)
Q Consensus        81 rfp~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f  158 (164)
                      |||.++  .+|.|+|+|+|+++++++|+.++++.++.||++|||||+|++||++|+.++|.+++|+|.||++||+|||+|
T Consensus       102 rfp~~~~~~~i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AAG~f  181 (380)
T 3c3r_A          102 KFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAF  181 (380)
T ss_dssp             TTTCSSCCCCCCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCccceeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence            999865  789999999998777666668899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q psy17538        159 NYLKST  164 (164)
Q Consensus       159 ~~l~e~  164 (164)
                      +||+|+
T Consensus       182 ~~l~~~  187 (380)
T 3c3r_A          182 LHIKET  187 (380)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999874

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A

Probab=100.00  E-value=1.1e-41  Score=307.21  Aligned_cols=164  Identities=47%  Similarity=0.752  Sum_probs=150.7

Q ss_pred             CCCCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHh
Q psy17538          1 MAEFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLES   80 (164)
Q Consensus         1 m~~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~   80 (164)
                      |++||++|+|+|.+|||..||++||.++|+.+.++|+.|.++|.+|+.||++++...+++++++++.|.+||.||..|+.
T Consensus         7 ms~~l~~plK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~~~~L~~Y~~~L~~l~~   86 (704)
T 2xs1_A            7 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEP   86 (704)
T ss_dssp             -CCCCCCCCCCBCCCCSHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHhhcCCCCCCCcCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999999954357899999999999999998754457788899999999999999999


Q ss_pred             ccCCCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHH
Q psy17538         81 KIFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIF  158 (164)
Q Consensus        81 rfp~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f  158 (164)
                      |||.++  .+|.|+|+|+|++++.++|+.++++.++.||++|||||+|++||++|+.++|.+++|+|.||++||+|||+|
T Consensus        87 rfp~~~~~~~i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~f  166 (704)
T 2xs1_A           87 KFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAF  166 (704)
T ss_dssp             GSCTTTCSSCCCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence            999865  789999999998877676668899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q psy17538        159 NYLKST  164 (164)
Q Consensus       159 ~~l~e~  164 (164)
                      +||+++
T Consensus       167 ~~l~~~  172 (704)
T 2xs1_A          167 LHIKET  172 (704)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999874

>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-41  Score=286.61  Aligned_cols=154  Identities=25%  Similarity=0.313  Sum_probs=138.7

Q ss_pred             CCCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHH-HHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhHhc
Q psy17538          3 EFLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLN-LFSKLRTAAVWKVFEKHESSLEVIYSYYDHLVSLESK   81 (164)
Q Consensus         3 ~~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~-~l~~LR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~r   81 (164)
                      |||++|+|+|.+|||..||++||.++|+++ +.|+.|.++|. +|++||++++  .+.+++++++.|.+||.||..|+.|
T Consensus         9 ~~l~~plK~t~~vd~~~~L~~~I~~~y~~~-~~~~~y~~~l~~~l~~lR~~~~--~~~~~~~~~~~l~~Y~~~L~~l~~r   85 (392)
T 1zb1_A            9 YLFDLKLKDTEKLDWKKGLSSYLKKSYGSS-QWRTFYDEKATSELDHLRNNAN--GELAPSSLSEQNLKYYSFLEHLYFR   85 (392)
T ss_dssp             CCCCCCCCCBCCCCHHHHHHHHHHHHSCTT-TGGGGCCHHHHHHHHHHHHHTT--SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCccCHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999999932 12777899999 9999999987  4578899999999999999999999


Q ss_pred             cCCCC--CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHH
Q psy17538         82 IFPAT--VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQSLDTDEGLKLAAKMLQSSAGIFN  159 (164)
Q Consensus        82 fp~~~--~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~~~~~~~~~K~A~~~fq~AAg~f~  159 (164)
                      ||.++  .++.|+|+|+|.. +.+ ++.++++.++.||++|||||+|++|||+|+.++|.   |+|.||++||+|||+|+
T Consensus        86 f~~~~~~~~i~F~W~d~l~~-~~~-~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~~~r~---~lk~A~~~fq~AAG~f~  160 (392)
T 1zb1_A           86 LGSKGSRLKMDFTWYDAEYS-SAQ-KGLKYTQHTLAFEKSCTLFNIAVIFTQIARENINE---DYKNSIANLTKAFSCFE  160 (392)
T ss_dssp             HGGGGGGGCCCEEEECCCCS-SSC-SSCEEEECCHHHHHHHHHHHHHHHHHHHHHHTTTS---SSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccceeeeeccccc-ccC-CCCceeccchHHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHHHHH
Confidence            99754  7899999999962 222 24789999999999999999999999999999885   99999999999999999


Q ss_pred             HhhcC
Q psy17538        160 YLKST  164 (164)
Q Consensus       160 ~l~e~  164 (164)
                      ||+|+
T Consensus       161 ~l~~~  165 (392)
T 1zb1_A          161 YLSEN  165 (392)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99874

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A

Probab=99.96  E-value=1.4e-28  Score=207.92  Aligned_cols=144  Identities=19%  Similarity=0.201  Sum_probs=119.8

Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhhh--ccCCChh-hHHHHHHHHHHHHHhHh
Q psy17538          4 FLAVPLKKPTDVDIIKPLKNLIALQFPNDNEKLDILNEKLNLFSKLRTAAVWK--VFEKHES-SLEVIYSYYDHLVSLES   80 (164)
Q Consensus         4 ~l~iPlK~t~~~d~~~~l~~~I~~~y~~~~~~~~~~~~dl~~l~~LR~~~~~~--~~~~~~~-~~~~l~~Yy~qL~~l~~   80 (164)
                      |=+.|||.|.+|+|..       ....   +++ ...+.++++..+|..++..  .+..+.+ .++.+.+||.+|..|..
T Consensus         7 ~~r~~lk~T~~v~F~~-------~~~~---~~~-~~~~~~~~l~~~R~~l~~~~~~~~~~~~~~~~~l~~Yl~~L~~l~~   75 (376)
T 3r9m_A            7 FHRNPLKATAPVSFNY-------YGVV---TGP-SASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFIN   75 (376)
T ss_dssp             CCCCCCCCBCCCCCCC-------GGGB---CSH-HHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHGGGTB
T ss_pred             cccCCCCCCceeeeee-------eeec---CCc-hHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            5578999999999963       2223   333 5688899999999988632  3344445 46999999999999999


Q ss_pred             ccCCC--C----CccceeeccccccCCCCCCcccceecchhhhHHHHHHHHHHHHHHHHHhC---CCCChhhHHHHHHHH
Q psy17538         81 KIFPA--T----VNIPFRWKDAFNKGSLFGGRISLTVCSLAWERVCVLFNIAALQSAIAQAQ---SLDTDEGLKLAAKML  151 (164)
Q Consensus        81 rfp~~--~----~~i~F~W~ds~~~~~~~~~~~~~~~~~l~fE~a~vLfNiaa~~s~~a~~~---~~~~~~~~K~A~~~f  151 (164)
                      +|+..  +    .+|.|+|+|+|++      +.++++.++.||++|||||||++|||+|+.+   +|.++||+|.||++|
T Consensus        76 ~~~~~~~~~~l~~~i~F~W~dsl~~------~~~~~~~sl~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~f  149 (376)
T 3r9m_A           76 SLDESTQESKLRYIQNFKWTDTLQG------QVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSL  149 (376)
T ss_dssp             CSSCTTCBCTTTTSCCEEECCTTST------TCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             ccccCCccccccccceeEeeCCCCC------CCceecccHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence            98852  2    5799999999984      4688999999999999999999999999986   578899999999999


Q ss_pred             HHHHHHHHHhhcC
Q psy17538        152 QSSAGIFNYLKST  164 (164)
Q Consensus       152 q~AAg~f~~l~e~  164 (164)
                      |+|||+|+||+|+
T Consensus       150 q~AAG~f~~l~~~  162 (376)
T 3r9m_A          150 KIAAGIFKHLKES  162 (376)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00