Psyllid ID: psy17900

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mefvppnkrsdeYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANkhcipdqeLIVLIWSTVMAQVEWNKKEELVAEQALKHLKqftplfgaftdtAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL
Flexible Loop (DISEMBL)
mefvppnkrsdeyfRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL
Low Complexity Region (SEG)
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAqasqeakkelqeqleeqiseGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL
Disordered region (IsUnstruct)
************YFRTVFEEKGLADIVKLH************************SIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK***
Disordered Region (DISOPRED)
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQE*LEE**SEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEW**********ALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL
Disordered Region (DISEMBL)
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMA****************QISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL
Disordered Region (DISPRO)
*EFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMxxxxxxxxxxxxxxxxxxxxxGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q9VNE2	422	Protein extra bases OS=Dr	yes	N/A	0.974	0.362	0.603	1e-49
Q6PD83	419	Basic leucine zipper and	yes	N/A	0.974	0.365	0.506	4e-41
Q5ZLT7	418	Basic leucine zipper and	yes	N/A	0.974	0.366	0.519	5e-41
Q5R7L4	419	Basic leucine zipper and	yes	N/A	0.974	0.365	0.512	2e-40
Q6P7P5	419	Basic leucine zipper and	yes	N/A	0.974	0.365	0.512	2e-40
Q9CQC6	419	Basic leucine zipper and	yes	N/A	0.974	0.365	0.512	2e-40
Q7L1Q6	419	Basic leucine zipper and	yes	N/A	0.974	0.365	0.512	2e-40
Q6P2Z0	419	Basic leucine zipper and	yes	N/A	0.974	0.365	0.474	4e-37
Q803N9	418	Basic leucine zipper and	no	N/A	0.974	0.366	0.480	1e-36
Q8AVM7	419	Basic leucine zipper and	N/A	N/A	0.974	0.365	0.454	5e-36

>sp|Q9VNE2|EXBA_DROME Protein extra bases OS=Drosophila melanogaster GN=exba PE=1 SV=1

 Score =  195 bits (495), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 121/154 (78%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           M+F PPNKR++EYF+ VF +K L +IVKLH AQASQEAK+ELQ+ L + I++     +I 
Sbjct: 217 MDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQASQEAKRELQQALIDDINDEKPYNEIT 276

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           +DI++ + +  IPD E+IV+IWST+M+  EWNKKEELV +QA++HLK + PL  AF  T 
Sbjct: 277 SDIKDFSQRTNIPDHEIIVIIWSTIMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFAST- 335

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+ FQKIILLFYK
Sbjct: 336 DRSELALILKVQEFCYENMNFMKAFQKIILLFYK 369

May be involved in memory formation.
Drosophila melanogaster (taxid: 7227)

>sp|Q6PD83|BZW1A_DANRE Basic leucine zipper and W2 domain-containing protein 1-A OS=Danio rerio GN=bzw1a PE=2 SV=1

 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NKRS E+F   F + GL ++      Q S  A+KELQ++L+EQ+S G ++KDI+
Sbjct: 216 MELFPANKRSCEHFSKYFTDAGLKELSDFARNQQSIGARKELQKELQEQMSRGETLKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           A +RE   K  I +Q +I ++W++VM+ VEWNKKEELV EQA+KHLKQ++PL  AFT   
Sbjct: 276 AYVREEMKKTSISEQTMIGIVWTSVMSSVEWNKKEELVTEQAIKHLKQYSPLLKAFTSQG 335

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
             +EL L+LK+QE+CY+N++ M+ FQKI++L YK
Sbjct: 336 L-SELTLLLKIQEYCYDNIHFMKAFQKIVVLLYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Danio rerio (taxid: 7955)

>sp|Q5ZLT7|BZW1_CHICK Basic leucine zipper and W2 domain-containing protein 1 OS=Gallus gallus GN=BZW1 PE=2 SV=1

 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 215 MELFPANKQSVEHFSKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 274

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ I +Q +I +IWS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 275 LYVKEEMKKNNISEQTVIAIIWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 333

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 334 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 367

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Gallus gallus (taxid: 9031)

>sp|Q5R7L4|BZW1_PONAB Basic leucine zipper and W2 domain-containing protein 1 OS=Pongo abelii GN=BZW1 PE=2 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Pongo abelii (taxid: 9601)

>sp|Q6P7P5|BZW1_RAT Basic leucine zipper and W2 domain-containing protein 1 OS=Rattus norvegicus GN=Bzw1 PE=2 SV=1

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQC6|BZW1_MOUSE Basic leucine zipper and W2 domain-containing protein 1 OS=Mus musculus GN=Bzw1 PE=1 SV=1

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Mus musculus (taxid: 10090)

>sp|Q7L1Q6|BZW1_HUMAN Basic leucine zipper and W2 domain-containing protein 1 OS=Homo sapiens GN=BZW1 PE=1 SV=1

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK+S E+F   F E GL ++ +    Q +  A+KELQ++L+EQ+S G   KDI+
Sbjct: 216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct: 276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Homo sapiens (taxid: 9606)

>sp|Q6P2Z0|BZW1_XENTR Basic leucine zipper and W2 domain-containing protein 1 OS=Xenopus tropicalis GN=bzw1 PE=2 SV=1

 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 112/154 (72%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK++ E+F   F + GL ++ +    Q +  A+KELQ++L+E +S G  +K+I 
Sbjct: 216 MELFPANKQTVEHFTKYFTDAGLKELAEYVRNQQTIGARKELQKELQEMMSRGEPLKEIS 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             +++   K+ I +Q +I ++WS+VM+ VEWNKKEELV EQA+KHLKQ++PL  AFT T 
Sbjct: 276 MYVKDEMKKNNISEQTVIGILWSSVMSCVEWNKKEELVTEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKSFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Xenopus tropicalis (taxid: 8364)

>sp|Q803N9|BZW1B_DANRE Basic leucine zipper and W2 domain-containing protein 1-B OS=Danio rerio GN=bzw1b PE=2 SV=2

 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 108/154 (70%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NKRS E+F   F   GL +I      Q S  A+KELQ++L+EQIS G S K+I+
Sbjct: 216 MELFPVNKRSYEHFSRYFTGAGLKEISDFARNQQSLGARKELQKELQEQISLGVSFKEII 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
              +E   +  I +Q +I ++W+++M+ +EWNKKEELV EQA+KHLKQ +PL  AF+ T 
Sbjct: 276 DYCKEEMKRSSISEQLMIGIMWTSLMSDMEWNKKEELVTEQAIKHLKQHSPLLKAFS-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL+L+ ++QEFCY+N++ M+ FQK++LL YK
Sbjct: 335 AQSELSLLQRIQEFCYDNIHFMKTFQKMVLLLYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Danio rerio (taxid: 7955)

>sp|Q8AVM7|BZW1_XENLA Basic leucine zipper and W2 domain-containing protein 1 OS=Xenopus laevis GN=bzw1 PE=2 SV=1

 Score =  149 bits (377), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           ME  P NK++ E+F   + + GL ++ +    Q +  A+KE+ ++L+E IS G + K+I 
Sbjct: 216 MELFPANKQTVEHFTKYYTDAGLKELAEYVRNQQTIGARKEIHKELQEMISRGEAHKEIS 275

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             +++   K+ I +Q +I ++WS++M+ VEWNKKEELV EQA+KHLKQ++PL  AFT T 
Sbjct: 276 VYVKDEMKKNNISEQTVIGILWSSIMSCVEWNKKEELVTEQAIKHLKQYSPLLAAFT-TQ 334

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct: 335 GQSELTLLLKIQEYCYDNIHFMKSFQKIVVLFYK 368

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
326506056	425	predicted protein [Hordeum vulgare subsp	0.974	0.36	0.662	1e-56
328708859	425	PREDICTED: protein extra bases-like isof	0.974	0.36	0.662	1e-56
193704713	438	PREDICTED: protein extra bases-like isof	0.974	0.349	0.662	2e-56
242018554	420	hfb2 protein, putative [Pediculus humanu	0.974	0.364	0.688	4e-56
307184506	420	Protein extra bases [Camponotus floridan	0.974	0.364	0.707	8e-56
322789621	205	hypothetical protein SINV_14753 [Solenop	0.974	0.746	0.707	2e-54
383851709	420	PREDICTED: protein extra bases-like [Meg	0.974	0.364	0.694	3e-54
307212973	452	Protein extra bases [Harpegnathos saltat	0.974	0.338	0.694	5e-54
156538142	420	PREDICTED: protein extra bases-like [Nas	0.974	0.364	0.694	1e-53
350425922	420	PREDICTED: protein extra bases-like [Bom	0.974	0.364	0.688	3e-53

>gi|326506056|dbj|BAJ91267.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 135/154 (87%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           M+F+PPNKR++E  R  FEEKGL+D+VKLH+AQASQEAK+ L+ QL +  ++  ++K+I+
Sbjct: 224 MDFLPPNKRTEENLRAQFEEKGLSDVVKLHLAQASQEAKRNLEIQLNDDFNDNKNMKEII 283

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           ++I+E+++KH IP+ E+IVL+W+ VM QVEWNKKEEL+A+QALKHLKQ++PLF AF+ TA
Sbjct: 284 SNIKELSSKHDIPEHEIIVLVWTVVMTQVEWNKKEELLADQALKHLKQYSPLFSAFSTTA 343

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELALMLKVQE+CYENMN MRVFQKIILLFYK
Sbjct: 344 -RSELALMLKVQEYCYENMNFMRVFQKIILLFYK 376

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|328708859|ref|XP_003243818.1| PREDICTED: protein extra bases-like isoform 2 [Acyrthosiphon pisum]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 135/154 (87%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           M+F+PPNKR++E  R  FEEKGL+D+VKLH+AQASQEAK+ L+ QL +  ++  ++K+I+
Sbjct: 224 MDFLPPNKRTEENLRAQFEEKGLSDVVKLHLAQASQEAKRNLEIQLHDDFNDNKNMKEII 283

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           ++I+E+++KH IP+ E+IVL+W+ VM QVEWNKKEEL+A+QALKHLKQ++PLF AF+ TA
Sbjct: 284 SNIKELSSKHDIPEHEIIVLVWTVVMTQVEWNKKEELLADQALKHLKQYSPLFSAFSTTA 343

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELALMLKVQE+CYENMN MRVFQKIILLFYK
Sbjct: 344 -RSELALMLKVQEYCYENMNFMRVFQKIILLFYK 376

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193704713|ref|XP_001943194.1| PREDICTED: protein extra bases-like isoform 1 [Acyrthosiphon pisum]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 135/154 (87%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           M+F+PPNKR++E  R  FEEKGL+D+VKLH+AQASQEAK+ L+ QL +  ++  ++K+I+
Sbjct: 237 MDFLPPNKRTEENLRAQFEEKGLSDVVKLHLAQASQEAKRNLEIQLHDDFNDNKNMKEII 296

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           ++I+E+++KH IP+ E+IVL+W+ VM QVEWNKKEEL+A+QALKHLKQ++PLF AF+ TA
Sbjct: 297 SNIKELSSKHDIPEHEIIVLVWTVVMTQVEWNKKEELLADQALKHLKQYSPLFSAFSTTA 356

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELALMLKVQE+CYENMN MRVFQKIILLFYK
Sbjct: 357 -RSELALMLKVQEYCYENMNFMRVFQKIILLFYK 389

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018554|ref|XP_002429739.1| hfb2 protein, putative [Pediculus humanus corporis] gi|212514751|gb|EEB17001.1| hfb2 protein, putative [Pediculus humanus corporis]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 132/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEF+P NKR++E FRTVFE+KGL ++VKLH AQASQEAK++LQ QL+E +SEG  IK+I 
Sbjct: 218 MEFMPANKRTEENFRTVFEDKGLHELVKLHKAQASQEAKRDLQRQLQEALSEGKPIKEIT 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            DIR+ A K+ IP+Q+++ +IWSTVMAQ EWNKKEELVAEQALKHLKQ+T LF +FT++ 
Sbjct: 278 TDIRDFAAKNHIPEQDVVAIIWSTVMAQAEWNKKEELVAEQALKHLKQYTVLFESFTNS- 336

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+EL LML++QEFCY NMN M+VFQKIILLFYK
Sbjct: 337 QRSELQLMLRIQEFCYGNMNFMKVFQKIILLFYK 370

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184506|gb|EFN70895.1| Protein extra bases [Camponotus floridanus]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 131/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++E+FR+VFE  GLADIVKLH AQASQEAK++LQ+ L + ++E   +KDI 
Sbjct: 218 MEFVPPNKRTEEHFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLAENRPMKDIT 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A + CIP+ E+I LIW  VM Q EWNKKEELVAEQALKHLK +TPLFGAFT TA
Sbjct: 278 LDLKEMAQRSCIPEHEVIGLIWVVVMGQAEWNKKEELVAEQALKHLKTYTPLFGAFTTTA 337

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 338 -RSELALILKVQEFCYENMNFMKVFQKIVLLFYK 370

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789621|gb|EFZ14836.1| hypothetical protein SINV_14753 [Solenopsis invicta]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 130/154 (84%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++E+FR+VFE  GLADIVKLH AQASQEAK++LQ+ L + ++E   +KDI 
Sbjct: 3   MEFVPPNKRTEEHFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLAENRPMKDIT 62

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A +  IP+ E+I LIW  VM Q EWNKKEELVAEQALKHLK FTPLFGAFT TA
Sbjct: 63  LDLKEMAQRSGIPEHEVIGLIWVVVMGQAEWNKKEELVAEQALKHLKTFTPLFGAFTTTA 122

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 123 -RSELALILKVQEFCYENMNFMKVFQKIVLLFYK 155

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851709|ref|XP_003701374.1| PREDICTED: protein extra bases-like [Megachile rotundata]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 131/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++EYFR+VFE  GLADIVKLH AQASQEAK++LQ+ L + + +G  +KDI+
Sbjct: 218 MEFVPPNKRTEEYFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLVDGRPMKDII 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A +  IP+ E+I LIW+ VM Q EWNKKEELVA+QALKHLK +TPLF AFT TA
Sbjct: 278 LDLKEMAQRSNIPEHEVIGLIWAVVMGQAEWNKKEELVADQALKHLKVYTPLFDAFTTTA 337

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 338 -RSELALILKVQEFCYENMNFMKVFQKIVLLFYK 370

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212973|gb|EFN88555.1| Protein extra bases [Harpegnathos saltator]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 131/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++E+FR+VFE  GLADIVKLH AQASQEAK++LQ+ L + +++   +KDI+
Sbjct: 250 MEFVPPNKRTEEHFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLADNRPMKDII 309

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A +  IP+ E+I LIW  VM Q EWNKKEELVAEQALKHLK +TPLFGAFT TA
Sbjct: 310 FDLKEMAQRSGIPEHEVIGLIWVVVMGQAEWNKKEELVAEQALKHLKIYTPLFGAFTTTA 369

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 370 -RSELALILKVQEFCYENMNFMKVFQKIVLLFYK 402

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538142|ref|XP_001608265.1| PREDICTED: protein extra bases-like [Nasonia vitripennis]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 132/154 (85%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR+DEYFR+VFE   LADIVKLH AQASQEAK++LQ+ L + +++   IKDIV
Sbjct: 218 MEFVPPNKRTDEYFRSVFENADLADIVKLHKAQASQEAKRDLQDLLLDDLADQKPIKDIV 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
           +D++E+A +  IP+ ++I LIW+ VM Q EWNKKEELVAEQALKHLK +TPLFGAF +TA
Sbjct: 278 SDLKEMAQRCNIPEHDIIGLIWNVVMGQAEWNKKEELVAEQALKHLKIYTPLFGAFANTA 337

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            ++ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 338 -KSELALILKVQEFCYENMNFMKVFQKIVLLFYK 370

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425922|ref|XP_003494274.1| PREDICTED: protein extra bases-like [Bombus impatiens]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 129/154 (83%), Gaps = 1/154 (0%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
           MEFVPPNKR++EYFR+VFE  GLADIVKLH AQASQEAK++LQ+ L + +++   +KDI+
Sbjct: 218 MEFVPPNKRTEEYFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLADNRPLKDII 277

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
            D++E+A K  IP+ E+I LIW  VM Q EWNKKEELVA+QALKHLK +TPLF  FT TA
Sbjct: 278 LDLKEMAQKSGIPEHEVIGLIWVVVMGQAEWNKKEELVADQALKHLKIYTPLFDVFTTTA 337

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
            R+ELAL+LKVQEFCYENMN M+VFQKI+LLFYK
Sbjct: 338 -RSELALLLKVQEFCYENMNFMKVFQKIVLLFYK 370

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
FB|FBgn0250753	422	exba "extra bases" [Drosophila	0.974	0.362	0.525	1.3e-38
UNIPROTKB|F1NDS7	421	BZW1 "Basic leucine zipper and	0.974	0.363	0.454	4.7e-32
UNIPROTKB|Q5ZLT7	418	BZW1 "Basic leucine zipper and	0.974	0.366	0.454	4.7e-32
UNIPROTKB|F6V4W0	451	BZW1 "Uncharacterized protein"	0.974	0.339	0.448	9.8e-32
UNIPROTKB|Q7L1Q6	419	BZW1 "Basic leucine zipper and	0.974	0.365	0.448	9.8e-32
UNIPROTKB|F1SI55	419	BZW1 "Uncharacterized protein"	0.974	0.365	0.448	9.8e-32
MGI|MGI:1914132	419	Bzw1 "basic leucine zipper and	0.974	0.365	0.448	9.8e-32
RGD|735129	419	Bzw1 "basic leucine zipper and	0.974	0.365	0.448	9.8e-32
ZFIN|ZDB-GENE-030131-3951	419	bzw1a "basic leucine zipper an	0.974	0.365	0.435	5.4e-31
UNIPROTKB|F1MZK4	452	BZW1 "Uncharacterized protein"	0.974	0.338	0.445	8.8e-31

FB|FBgn0250753 exba "extra bases" [Drosophila melanogaster (taxid:7227)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 81/154 (52%), Positives = 104/154 (67%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             M+F PPNKR++EYF+ VF +K L +IVKLH A                         +I 
Sbjct:   217 MDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQASQEAKRELQQALIDDINDEKPYNEIT 276

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             +DI++ + +  IPD E+IV+IWST+M+  EWNKKEELV +QA++HLK + PL  AF  T 
Sbjct:   277 SDIKDFSQRTNIPDHEIIVIIWSTIMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFAST- 335

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              R+ELAL+LKVQEFCYENMN M+ FQKIILLFYK
Sbjct:   336 DRSELALILKVQEFCYENMNFMKAFQKIILLFYK 369

GO:0048663 "neuron fate commitment" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP;TAS

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043022 "ribosome binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0017148 "negative regulation of translation" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0031369 "translation initiation factor binding" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

UNIPROTKB|F1NDS7 BZW1 "Basic leucine zipper and W2 domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 70/154 (45%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   218 MELFPANKQSVEHFSKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 277

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ I +Q +I +IWS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   278 LYVKEEMKKNNISEQTVIAIIWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 336

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   337 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 370

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZLT7 BZW1 "Basic leucine zipper and W2 domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 70/154 (45%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   215 MELFPANKQSVEHFSKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 274

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ I +Q +I +IWS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   275 LYVKEEMKKNNISEQTVIAIIWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 333

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   334 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 367

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F6V4W0 BZW1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   248 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 307

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   308 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 366

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   367 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 400

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|Q7L1Q6 BZW1 "Basic leucine zipper and W2 domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SI55 BZW1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

MGI|MGI:1914132 Bzw1 "basic leucine zipper and W2 domains 1" [Mus musculus (taxid:10090)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016070 "RNA metabolic process" evidence=IEA

RGD|735129 Bzw1 "basic leucine zipper and W2 domains 1" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/154 (44%), Positives = 98/154 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   216 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T 
Sbjct:   276 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQ 334

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
              ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   335 GQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 368

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-030131-3951 bzw1a "basic leucine zipper and W2 domains 1a" [Danio rerio (taxid:7955)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 67/154 (43%), Positives = 95/154 (61%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NKRS E+F   F + GL ++                          G ++KDI+
Sbjct:   216 MELFPANKRSCEHFSKYFTDAGLKELSDFARNQQSIGARKELQKELQEQMSRGETLKDII 275

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             A +RE   K  I +Q +I ++W++VM+ VEWNKKEELV EQA+KHLKQ++PL  AFT   
Sbjct:   276 AYVREEMKKTSISEQTMIGIVWTSVMSSVEWNKKEELVTEQAIKHLKQYSPLLKAFTSQG 335

Query:   121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
               +EL L+LK+QE+CY+N++ M+ FQKI++L YK
Sbjct:   336 -LSELTLLLKIQEYCYDNIHFMKAFQKIVVLLYK 368

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1MZK4 BZW1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 69/155 (44%), Positives = 98/155 (63%)

Query:     1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAXXXXXXXXXXXXXXXXXXXXGASIKDIV 60
             ME  P NK+S E+F   F E GL ++ +                        G   KDI+
Sbjct:   248 MELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII 307

Query:    61 ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLK-QFTPLFGAFTDT 119
               ++E   K+ IP+  +I ++WS+VM+ VEWNKKEELVAEQA+KHLK Q++PL  AFT T
Sbjct:   308 LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKKQYSPLLAAFT-T 366

Query:   120 APRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
               ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK
Sbjct:   367 QGQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYK 401

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VNE2	EXBA_DROME	No assigned EC number	0.6038	0.9745	0.3625	yes	N/A
Q9CQC6	BZW1_MOUSE	No assigned EC number	0.5129	0.9745	0.3651	yes	N/A
Q5R7L4	BZW1_PONAB	No assigned EC number	0.5129	0.9745	0.3651	yes	N/A
Q6PD83	BZW1A_DANRE	No assigned EC number	0.5064	0.9745	0.3651	yes	N/A
Q7L1Q6	BZW1_HUMAN	No assigned EC number	0.5129	0.9745	0.3651	yes	N/A
Q5ZLT7	BZW1_CHICK	No assigned EC number	0.5194	0.9745	0.3660	yes	N/A
Q6P7P5	BZW1_RAT	No assigned EC number	0.5129	0.9745	0.3651	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	157
cd11560	194	cd11560, W2_eIF5C_like, C-terminal W2 domain of th	1e-71
cd11473	135	cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/	4e-06
smart00515	83	smart00515, eIF5C, Domain at the C-termini of GCD6	8e-04
pfam02020	75	pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon	0.002

>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins

 Score =  213 bits (545), Expect = 1e-71
 Identities = 80/153 (52%), Positives = 116/153 (75%), Gaps = 1/153 (0%)

Query: 2   EFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVA 61
           EF PPNKR++E+F   F+E+GL ++V+ +  QASQE KKELQ++L+E I+E   +K+I+A
Sbjct: 1   EFFPPNKRTEEHFAEHFKEEGLDELVEFYRKQASQEIKKELQQELKEMIAEEEPVKEIIA 60

Query: 62  DIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAP 121
            ++E   K  +P+ E++ L+W+ +M  VEW+KKE+ +AEQAL+HLK++ PL  AF  T  
Sbjct: 61  AVKEQMKKSSLPEHEVVGLLWTALMDAVEWSKKEDQIAEQALRHLKKYAPLLAAFC-TTA 119

Query: 122 RAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
           RAELAL+ K+QE+CYENM  M+VFQKI+ L YK
Sbjct: 120 RAELALLNKIQEYCYENMKFMKVFQKIVKLLYK 152

eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 194

>gnl|CDD|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 39  KKELQEQLEEQISEGAS-IKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNK-KEE 96
            K+L++ L +++ E  S   + V   +   +   I  +E++ ++ + V+  VE       
Sbjct: 3   NKKLRDSLLKELEEDKSSDVESVKAAKSKLDLDPISLEEVVKVLLTAVVNAVESADSISL 62

Query: 97  LVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMN--LMRVFQKIILLFYK 154
              EQ +  LK++ P+         + +L L+LK+++ C +     L+ + +KI+ L Y 
Sbjct: 63  TQKEQLVLVLKKYGPVLRELLKLIKKDQLYLLLKIEKLCLQLKLSELISLLEKILDLLYD 122

Query: 155 RGL 157
             +
Sbjct: 123 ADV 125

This domain is found at the C-terminus of several translation initiation factors, including the epsilon chain of eIF2b, where it has been found to catalyze the conversion of eIF2.GDP to its active eIF2.GTP form. The structure of the domain resembles that of a set of concatenated HEAT repeats. Length = 135

>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 111 PLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFY 153
           PL   F       +L L+  ++EFC E   L ++  KI+   Y
Sbjct: 2   PLL-KFLAKDEEEQLELLYAIEEFCVELEKLGKLLPKILKSLY 43

Length = 83

>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 122 RAELALMLKVQEFCY-ENMNLMRVFQKIILLFYK 154
            A+  L+  ++ FC  EN  L+++  KI+ L Y 
Sbjct: 1   DAQKDLLGALERFCGKENPELIKLLPKILKLLYD 34

This domain of unknown function is found at the C-terminus of several translation initiation factors. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
KOG2297|consensus	412		100.0
KOG1461|consensus	673		99.71
smart00515	83	eIF5C Domain at the C-termini of GCD6, eIF-2B epsi	99.15
PF02020	84	W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003	98.6
KOG2767|consensus	400		97.35
PF09090	253	MIF4G_like_2: MIF4G like; InterPro: IPR015174 This	94.86
KOG1104|consensus	759		87.38

>KOG2297|consensus

Probab=100.00  E-value=2e-56  Score=376.14  Aligned_cols=156  Identities=51%  Similarity=0.919  Sum_probs=154.7

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHH
Q psy17900          1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVL   80 (157)
Q Consensus         1 ~~ffP~~kR~~~~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~   80 (157)
                      |+||||||||.|||.+||.++||.+|++|+++|++++.+||+|+.|++++++|.|.++||..||+.++.+++|+++||++
T Consensus       216 meffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~i  295 (412)
T KOG2297|consen  216 MEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGI  295 (412)
T ss_pred             HHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900         81 IWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus        81 iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV  157 (157)
                      ||+++|+.|+||++++++++||+||+|+|+|||++||+++ ++|++||+|||+|||||++|||+||+||++||+.||
T Consensus       296 vWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g-~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dV  371 (412)
T KOG2297|consen  296 VWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQG-QSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADV  371 (412)
T ss_pred             eHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999 999999999999999999999999999999999997

>KOG1461|consensus

Probab=99.71  E-value=1.4e-16  Score=144.30  Aligned_cols=121  Identities=19%  Similarity=0.383  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhh---ccchHhHHHHHHHHHHhhHhh
Q psy17900         35 SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVE---WNKKEELVAEQALKHLKQFTP  111 (157)
Q Consensus        35 ~~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~---ws~k~~~~~e~a~~~lkk~~p  111 (157)
                      ...|++|+.++|+|++++++..+.++.+||+++.++|++.+||+++++.++|+.+.   .|+-.+ ...++++.+++|+|
T Consensus       505 ~~~F~~Ev~~s~~ra~Een~~~D~~vlEINslRla~N~s~~ev~~av~~all~~~~~~~~~~~~~-~~~~~~~~~~~w~~  583 (673)
T KOG1461|consen  505 TKDFEKEVLGSLQRAFEENSDMDNLVLEINSLRLAYNVSLKEVAGAVFMALLKLILHQDHSSMNE-VKRAALKVFTQWGP  583 (673)
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHhhhHHhhcCCHHHHHHHHHHHHHHHHhcCCCccchh-HHHHHHHHHHHhhH
Confidence            35688899999999999999999999999999999999999999999999999984   333333 67799999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900        112 LFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus       112 LL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV  157 (157)
                      |++.+..+. +.|+++|.+++++|.++..+.+.|.++++.||+.|+
T Consensus       584 l~~~y~ks~-deqid~l~~led~~~e~~~~~~~~~~~v~~lY~~di  628 (673)
T KOG1461|consen  584 LLGNYIKSE-DEQIDLLLALEDKCVESEELGPKAAKLVHYLYDYDI  628 (673)
T ss_pred             HhhhhhhhH-HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhH
Confidence            999999999 999999999999999998889999999999999874

>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

Probab=99.15  E-value=6.2e-11  Score=82.41  Aligned_cols=47  Identities=23%  Similarity=0.565  Sum_probs=45.1

Q ss_pred             hhHHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900        110 TPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus       110 ~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV  157 (157)
                      +|||++|+++. +.|+++|+++|.||+++..+.+.|++|++.|||.||
T Consensus         1 ~~ll~~~~~~~-~~q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~di   47 (83)
T smart00515        1 GPLLKFLAKDE-EEQIDLLYAIEEFCVELEKLIKLLPKILKSLYDADI   47 (83)
T ss_pred             ChHHHHHHCCh-HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhhcc
Confidence            58999999999 999999999999999988899999999999999997

>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []

Probab=98.60  E-value=6.7e-08  Score=67.41  Aligned_cols=36  Identities=36%  Similarity=0.691  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900        122 RAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus       122 ~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV  157 (157)
                      +.|+++|.++|.||+++.++++.|+.|++.|||.||
T Consensus         2 ~~Q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~Di   37 (84)
T PF02020_consen    2 DDQVDLLNALEEFCAENPNLMPLFPKILQQLYDEDI   37 (84)
T ss_dssp             HHHHHHHHHHHHHHHHTCGHGGHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhhhh
Confidence            689999999999999999999999999999999997

The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.

>KOG2767|consensus

Probab=97.35  E-value=0.002  Score=56.08  Aligned_cols=59  Identities=17%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhhhc-chhhHHHHHHHHHHhhcCC
Q psy17900         99 AEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYEN-MNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus        99 ~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~-~~~mk~F~kil~~LY~~DV  157 (157)
                      .+...+.|.++.++|.+||+.+++.|..||.-|+.+|.-. ..+++.-+.||+.|||.|+
T Consensus       290 ~e~ivkei~k~~~~l~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd~DI  349 (400)
T KOG2767|consen  290 DEKIVKEILKHRALLLKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKELYDEDI  349 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Confidence            5567799999999999999997799999999999999985 4568999999999999986

>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain

Probab=94.86  E-value=0.35  Score=39.90  Aligned_cols=94  Identities=17%  Similarity=0.226  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC----hHHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHHh
Q psy17900         41 ELQEQLEEQISEGASIKDIVADIREIANKHCIP----DQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAF  116 (157)
Q Consensus        41 el~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~----~~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~F  116 (157)
                      ++.+.|.+.+....+++++..++++.....+-+    +.-.+.++++|++...   +|  . ---+...|.+|.+.|..+
T Consensus        12 ~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~G---Sk--S-~SH~~~~lery~~~Lk~l   85 (253)
T PF09090_consen   12 ALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIG---SK--S-FSHVLSALERYKEVLKEL   85 (253)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHT---TT--S-HHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhc---Cc--h-HHHHHHHHHHHHHHHHHh
Confidence            477889999999999999998888776655543    2357888888888765   22  1 225667899999999999


Q ss_pred             -cCCCcHHHHHHHHHHHHHhhhcchh
Q psy17900        117 -TDTAPRAELALMLKVQEFCYENMNL  141 (157)
Q Consensus       117 -~~~~~~~ql~LL~kvQ~~Cye~~~~  141 (157)
                       +.+. ..|..+|..+-.|.-.|..+
T Consensus        86 ~~~~~-~~q~~il~~v~~~W~~~~q~  110 (253)
T PF09090_consen   86 EAESE-EAQFWILDAVFRFWKNNPQM  110 (253)
T ss_dssp             -TSSH-HHHHHHHHHHHHHHTT-HHH
T ss_pred             ccCCh-HHHHHHHHHHHHHHhcCCce
Confidence             8888 99999999999998887654

MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.

>KOG1104|consensus

Probab=87.38  E-value=3.6  Score=39.33  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHHhcCCC
Q psy17900         42 LQEQLEEQISEGASIKDIVADIREIANKHCIPD-QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA  120 (157)
Q Consensus        42 l~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~-~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~~~  120 (157)
                      +..++..++..-.++++++.++|+.-.+...+. .=.|+++.+++++..   +|.   -.-+...+.+|..+|.++|-+.
T Consensus       502 ~~~~l~~~~~~k~~~e~~~~iLk~~~~~~~~~~n~~~i~lfvq~~l~lG---SKS---fSH~f~~lek~~~vfk~l~~~~  575 (759)
T KOG1104|consen  502 VAVQLIVAFREKATAEEIVNILKSEDESEIGSFNRLKIILFVQTLLDLG---SKS---FSHAFSALEKYHTVFKKLCEDS  575 (759)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHhcCccccccCCcceehhhHHHHHHHhc---cch---hhhHHHHHHHHHHHHHHHhcCC
Confidence            467889999999999999999993332222222 346788889998886   221   1134678889999999999999


Q ss_pred             cHHHHHHHHHHHHHhhhcch
Q psy17900        121 PRAELALMLKVQEFCYENMN  140 (157)
Q Consensus       121 ~~~ql~LL~kvQ~~Cye~~~  140 (157)
                      ...|+.+|..|=++.-.|..
T Consensus       576 e~~q~~vl~~vft~Wk~n~Q  595 (759)
T KOG1104|consen  576 ETKQIIVLEAVFTFWKANPQ  595 (759)
T ss_pred             chhHHHHHHHHHHHHhcCch
Confidence            44499999999999888743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	1e-17
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	4e-15
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	8e-15
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	2e-11
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	5e-09
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	6e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182

 Score = 74.3 bits (182), Expect = 1e-17
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 35  SQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKK 94
            +  + E+   L+    E  S  ++V +I  +   + I  +E++ ++   V+        
Sbjct: 11  IKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMD 70

Query: 95  EELVA----EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIIL 150
             L +       L  LK ++P+F  +        L  +  +++F  E+  L     K+++
Sbjct: 71  SPLDSSRYCALLLPLLKAWSPVFRNYIKR-AADHLEALAAIEDFFLEHEALGISMAKVLM 129

Query: 151 LFYKR 155
            FY+ 
Sbjct: 130 AFYQL 134

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339

 Score = 69.9 bits (170), Expect = 4e-15
 Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 6/157 (3%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
            EF+P  +    +      E  L +  +           +EL  QLE+ + EG+S + + 
Sbjct: 172 KEFLPEGQDIGAFVAEQKVEYTLGEESE--APGQRALPSEELNRQLEKLLKEGSSNQRVF 229

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTA 120
             I    ++  I    L+  + + V          E      +  LK    L   +    
Sbjct: 230 DWIEANLSEQQIVSNTLVRALMTAVC---YSAIIFETPLRVDVAVLKARAKLLQKYLCD- 285

Query: 121 PRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL 157
            + EL  +  +Q           + +      Y   +
Sbjct: 286 EQKELQALYALQALVVTLEQPPNLLRMFFDALYDEDV 322

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168

 Score = 67.0 bits (163), Expect = 8e-15
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 16/132 (12%)

Query: 40  KELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVM------------- 86
            +L+++L +QI    S + I   I++  +     D+  + ++ ++ +             
Sbjct: 2   LKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDE 61

Query: 87  -AQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVF 145
                   KE+L  E+ L  L  F P+   F       +++ +  +Q  CY +     + 
Sbjct: 62  TDSSSAPSKEQLEQEKQL--LLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGML 119

Query: 146 QKIILLFYKRGL 157
            +  + FY   +
Sbjct: 120 LRFFVHFYDMEI 131

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 25/167 (14%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 1   MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60
            + +P   ++ +    + E KGL+ +  L           +L+++L +QI    S + I 
Sbjct: 169 QKMLPEIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIY 218

Query: 61  ADIREIANKHCIPDQELIVLIWSTVMAQV------------EWNKKEELVAEQALKHLKQ 108
             I++  +     D+  + ++ ++ +  +              +   +   EQ  + L  
Sbjct: 219 KWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS 278

Query: 109 FTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKR 155
           F P+   F       +++ +  +Q  CY +     +  +  + FY  
Sbjct: 279 FKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDM 325

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 14/120 (11%), Positives = 38/120 (31%), Gaps = 5/120 (4%)

Query: 40  KELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVA 99
           KE    +E  +     +   + ++  +     +   E+ +   + ++ +V      + + 
Sbjct: 24  KEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLG 83

Query: 100 --EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENM--NLMRVFQKIILLFYKR 155
             +  +K   Q+  LF           + LM  + E   E        +    ++  Y  
Sbjct: 84  PKDAVVKVFNQWGLLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDN 142

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 73  PDQELIVLIWSTVMAQVEWN-KKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKV 131
            D+E++       +  +      E L  E+  + +K++   F  F     +A+  L+  +
Sbjct: 28  SDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHFLRFCHNNKKAQRYLLHGL 87

Query: 132 QEFC-YENMNLMRVFQKIILLFYKRGL 157
           +         L+     I+   Y   L
Sbjct: 88  ECVVAMHQAQLISKIPHILKEMYDADL 114

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 14/37 (37%)

Query: 100 EQALKH----LKQFTPLFGAFTDTAPRAELALMLKVQ 132
           +QALK     LK +        D+AP    AL +K  
Sbjct: 19  KQALKKLQASLKLYAD------DSAP----ALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	99.97
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	99.97
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	99.95
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	99.94
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	99.92
2ful_A	177	EIF-5, eukaryotic translation initiation factor 5;	99.53
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	99.2
1h2v_C	771	80 kDa nuclear CAP binding protein; CAP-binding-co	94.48

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=99.97  E-value=5.5e-32  Score=229.11  Aligned_cols=148  Identities=17%  Similarity=0.229  Sum_probs=128.5

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHHhHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHH
Q psy17900          1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQ--EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI   78 (157)
Q Consensus         1 ~~ffP~~kR~~~~~~~~f~~~gL~~l~~~~~~~~~~--~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i   78 (157)
                      ++|||+++|    +.++|+++||+++++++.++.++  ...++++++|.+++++|.++++||.|||+++.++++++++|+
T Consensus       172 ~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~  247 (339)
T 1ug3_A          172 KEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLV  247 (339)
T ss_dssp             GGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHH
T ss_pred             HHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHH
Confidence            479999998    88999999999999999888877  578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hhccchHhHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900         79 VLIWSTVMAQ-VEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus        79 ~~iw~~lm~~-v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV  157 (157)
                      +++|+++|++ ++|++.  +  ....+++++|+|||++|+++. ++|+++|+++|++||++.+++++|.+|++.|||.||
T Consensus       248 ~~l~~a~~~~~~~~~~~--~--~~~~~~l~~~~pll~~~~~~~-~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~dV  322 (339)
T 1ug3_A          248 RALMTAVCYSAIIFETP--L--RVDVAVLKARAKLLQKYLCDE-QKELQALYALQALVVTLEQPPNLLRMFFDALYDEDV  322 (339)
T ss_dssp             HHHHHHHHHHTEECSSS--C--EECHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcCCc--h--HHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhccChHHHHHHHHHHHhCcch
Confidence            9999999998 588653  2  223478999999999999888 999999999999999999999999999999999997

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=223.75  Aligned_cols=145  Identities=19%  Similarity=0.336  Sum_probs=131.7

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHH
Q psy17900          1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVL   80 (157)
Q Consensus         1 ~~ffP~~kR~~~~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~   80 (157)
                      ++|||+++|+.++|.++|+++||++|+++.          +++++|.+++++|.++++|+.|||+++.++.+++++||++
T Consensus       169 ~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~----------~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~  238 (364)
T 3l6a_A          169 QKMLPEIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNI  238 (364)
T ss_dssp             GGGSCGGGCSHHHHHHHHHHHTCGGGCHHH----------HHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHH
T ss_pred             HHhCCccccchhHHHHHHHhCCCcccCCHH----------HHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHH
Confidence            379999999999999999999999999865          7999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh--hcc------------chHhHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHH
Q psy17900         81 IWSTVMAQV--EWN------------KKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQ  146 (157)
Q Consensus        81 iw~~lm~~v--~ws------------~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~  146 (157)
                      ||+++|++|  +||            +|.++..  +.+.|++|+|||.+|+++..+.|+++|+++|.+|+++.++.++|+
T Consensus       239 L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~--~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~  316 (364)
T 3l6a_A          239 LMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQ--EKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLL  316 (364)
T ss_dssp             HHHHHHHHHHHHHC----------CCCHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHHHHHHHHhcccccccccccccccHHHHHH--HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHH
Confidence            999999999  565            2444443  446899999999999999834599999999999999877888999


Q ss_pred             HHHHHHhhcCC
Q psy17900        147 KIILLFYKRGL  157 (157)
Q Consensus       147 kil~~LY~~DV  157 (157)
                      +|++.|||.||
T Consensus       317 ~il~~LYd~Di  327 (364)
T 3l6a_A          317 RFFVHFYDMEI  327 (364)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHhhh
Confidence            99999999997

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14

Probab=99.95  E-value=1.2e-27  Score=188.85  Aligned_cols=121  Identities=12%  Similarity=0.171  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh-hccchHhH-HHHHHHHHHhhHhhHH
Q psy17900         36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQV-EWNKKEEL-VAEQALKHLKQFTPLF  113 (157)
Q Consensus        36 ~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v-~ws~k~~~-~~e~a~~~lkk~~pLL  113 (157)
                      ..|++|++++|.|++++|+++++|+.+||++++++|+|++||+++||+|+|+++ +|++++.+ ..+++.++|++|+|||
T Consensus        20 ~~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll   99 (189)
T 1paq_A           20 EDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLF   99 (189)
T ss_dssp             -CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            458899999999999999999999999999999999999999999999999999 89887655 7789999999999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhh--hcchhhHHHHHHHHHHhhcCC
Q psy17900        114 GAFTDTAPRAELALMLKVQEFCY--ENMNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus       114 ~~F~~~~~~~ql~LL~kvQ~~Cy--e~~~~mk~F~kil~~LY~~DV  157 (157)
                      .+||++. +.|+.+|+++|.||+  ++.++++.|++|++.||+.||
T Consensus       100 ~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~Di  144 (189)
T 1paq_A          100 KRQAFDE-EEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDI  144 (189)
T ss_dssp             GGTCCSH-HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHcCc-HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccc
Confidence            9999988 999999999999999  899999999999999999997

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0

Probab=99.94  E-value=2.7e-26  Score=180.26  Aligned_cols=121  Identities=18%  Similarity=0.298  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhh--ccc--hHhHHHHHHHHHHhhHhh
Q psy17900         36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVE--WNK--KEELVAEQALKHLKQFTP  111 (157)
Q Consensus        36 ~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~--ws~--k~~~~~e~a~~~lkk~~p  111 (157)
                      ..|.+|+.++|.|++++|+++++++.+||++++++|+|++||+++||.|+|+++.  |++  ......+++.+.|++|+|
T Consensus        12 ~~F~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~   91 (182)
T 3jui_A           12 KVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSP   91 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHH
Confidence            4566799999999999999999999999999999999999999999999999983  565  456677799999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900        112 LFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus       112 LL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV  157 (157)
                      ||.+||++. +.|+++|+++|.+|+++..+++.|++|++.|||.||
T Consensus        92 ll~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~Di  136 (182)
T 3jui_A           92 VFRNYIKRA-ADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEI  136 (182)
T ss_dssp             HHHHHCCSH-HHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTS
T ss_pred             HHHHHhCCH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcch
Confidence            999999998 999999999999999999999999999999999997

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}

Probab=99.92  E-value=7.9e-25  Score=169.58  Aligned_cols=117  Identities=18%  Similarity=0.298  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhc--cc-hHh--H-------HHHHHHHHHhh
Q psy17900         41 ELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEW--NK-KEE--L-------VAEQALKHLKQ  108 (157)
Q Consensus        41 el~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~w--s~-k~~--~-------~~e~a~~~lkk  108 (157)
                      +++++|.++|++|+++++|+++|+++....++|++||++++|+++|+++.|  ++ +.+  +       +.+++.+++++
T Consensus         3 ~~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~   82 (168)
T 3d3m_A            3 KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS   82 (168)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999988  43 322  2       45799999999


Q ss_pred             HhhHHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900        109 FTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus       109 ~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV  157 (157)
                      |+|+|.+|+++..++|+++|+++|.+|+++..+++.|++|++.|||.||
T Consensus        83 ~~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~Dv  131 (168)
T 3d3m_A           83 FKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEI  131 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcch
Confidence            9999999999733999999999999999999999999999999999997

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.2e-14  Score=113.64  Aligned_cols=72  Identities=15%  Similarity=0.341  Sum_probs=66.4

Q ss_pred             ChHHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHh-hhcchhhHHHHHHHHH
Q psy17900         73 PDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC-YENMNLMRVFQKIILL  151 (157)
Q Consensus        73 ~~~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~C-ye~~~~mk~F~kil~~  151 (157)
                      ..++++.++|.++|+.            ++.++|++|+|||.+||++. +.|+.+|+++|.+| +++.++++.|++|++.
T Consensus        48 ~~~~~~~vl~~~lf~~------------~i~~~l~k~~~lL~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~  114 (177)
T 2ful_A           48 NDPKIGCVLAQCLFDE------------DIVNEIAEHNAFFTKILVTP-EYEKNFMGGIERFLGLEHKDLIPLLPKILVQ  114 (177)
T ss_dssp             TCTTHHHHHHHHSCST------------THHHHTTSCHHHHHHHCCSH-HHHHHHHHHHHHHHHTTCGGGGGGHHHHHHH
T ss_pred             hhhHHHHHHHHHHhch------------hHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            3489999999999962            56789999999999999888 99999999999999 7899999999999999


Q ss_pred             HhhcCC
Q psy17900        152 FYKRGL  157 (157)
Q Consensus       152 LY~~DV  157 (157)
                      ||+.||
T Consensus       115 LYd~DI  120 (177)
T 2ful_A          115 LYNNDI  120 (177)
T ss_dssp             HHHTTS
T ss_pred             Hhccch
Confidence            999997

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}

Probab=99.20  E-value=4.7e-11  Score=95.46  Aligned_cols=71  Identities=13%  Similarity=0.221  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHh-hhcchhhHHHHHHHHHHh
Q psy17900         75 QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC-YENMNLMRVFQKIILLFY  153 (157)
Q Consensus        75 ~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~C-ye~~~~mk~F~kil~~LY  153 (157)
                      +....++..++++.            ++.++|++|+|||.+||++..+.|+.+|+++|.|| +++..+++.|++|++.||
T Consensus        43 ~~~~~vl~e~lf~~------------~i~~~l~k~~~lL~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LY  110 (208)
T 2iu1_A           43 AMGPLVLTEVLFNE------------KIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMY  110 (208)
T ss_dssp             GGHHHHHHHHHCST------------THHHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence            45555555665532            56789999999999999843399999999999996 555688999999999999


Q ss_pred             hcCC
Q psy17900        154 KRGL  157 (157)
Q Consensus       154 ~~DV  157 (157)
                      +.||
T Consensus       111 D~DI  114 (208)
T 2iu1_A          111 DADL  114 (208)
T ss_dssp             HTTS
T ss_pred             ccch
Confidence            9997

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*

Probab=94.48  E-value=0.15  Score=47.25  Aligned_cols=94  Identities=13%  Similarity=0.202  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCC-------C-hHHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhH
Q psy17900         41 ELQEQLEEQISEGASIKDIVADIREIANKHCI-------P-DQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPL  112 (157)
Q Consensus        41 el~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~-------~-~~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pL  112 (157)
                      .+.++|..++.+..++++|+.++++......-       + ++..+.++|+|++...   +|  . ---....|.+|.++
T Consensus       480 ~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~G---sk--S-~SH~~~~lery~~~  553 (771)
T 1h2v_C          480 SVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA---AK--S-FSHSFSALAKFHEV  553 (771)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHS---TT--C-HHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhc---cc--h-HHHHHHHHHHHHHH
Confidence            36778889999999999999999983322211       1 1258889999999775   11  1 12556788999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHhhhcchh
Q psy17900        113 FGAFTDTAPRAELALMLKVQEFCYENMNL  141 (157)
Q Consensus       113 L~~F~~~~~~~ql~LL~kvQ~~Cye~~~~  141 (157)
                      |..++.+. +.|..+|..+-.|.-.+...
T Consensus       554 lk~l~~~~-~~q~~il~~v~~~W~~~~q~  581 (771)
T 1h2v_C          554 FKTLAESD-EGKLHVLRVMFEVWRNHPQM  581 (771)
T ss_dssp             HHHHTSSH-HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCH-HHHHHHHHHHHHHHhcCCce
Confidence            99999988 99999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1ug3a2	127	a.118.1.14 (A:1438-1564) Eukaryotic initiation fac	9e-18
d1paqa_	161	a.118.1.14 (A:) Translation initiation factor eIF-	3e-11

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (177), Expect = 9e-18
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 4/117 (3%)

Query: 38  AKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEEL 97
             +EL  QLE+ + EG+S + +   I    ++  I    L+  + + V       +    
Sbjct: 3   PSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPL- 61

Query: 98  VAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
                +  LK    L   +     + EL  +  +Q           + +      Y 
Sbjct: 62  --RVDVAVLKARAKLLQKYLCD-EQKELQALYALQALVVTLEQPPNLLRMFFDALYD 115

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 13/122 (10%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 37  EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEE 96
           + +KE    +E  +     +   + ++  +     +   E+ +   + ++ +V      +
Sbjct: 1   DFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQ 60

Query: 97  LVA--EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCY--ENMNLMRVFQKIILLF 152
            +   +  +K   Q+  LF           + LM  + E            +    ++  
Sbjct: 61  TLGPKDAVVKVFNQWGLLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSL 119

Query: 153 YK 154
           Y 
Sbjct: 120 YD 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1paqa_	161	Translation initiation factor eIF-2b epsilon {Bake	99.93
d1ug3a2	127	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.92
d1h2vc3	310	CBP80, 80KDa nuclear cap-binding protein {Human (H	96.11

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.5e-25  Score=170.62  Aligned_cols=119  Identities=12%  Similarity=0.117  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhccch--HhHHHHHHHHHHhhHhhHHHH
Q psy17900         38 AKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKK--EELVAEQALKHLKQFTPLFGA  115 (157)
Q Consensus        38 ~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~ws~k--~~~~~e~a~~~lkk~~pLL~~  115 (157)
                      |.+|+.++|.|++++++++++++.+||+++.++|+|++||+++||.++|+.+.+..+  .....+.+.+.|++|+|||.+
T Consensus         2 F~~Ev~~sl~r~~ee~~~~dn~iLElnslr~a~N~~~~dv~~av~~All~~i~~~~~~~~~~~~~~~~~~l~k~~~ll~~   81 (161)
T d1paqa_           2 FEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKR   81 (161)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGGG
T ss_pred             hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            778999999999999999999999999999999999999999999999999965433  223456888999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHhhhc--chhhHHHHHHHHHHhhcCC
Q psy17900        116 FTDTAPRAELALMLKVQEFCYEN--MNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus       116 F~~~~~~~ql~LL~kvQ~~Cye~--~~~mk~F~kil~~LY~~DV  157 (157)
                      |+++. ++|+++|+++|+||+++  .+.+++|++|++.|||.||
T Consensus        82 ~~~~~-~~q~~~L~~lq~~c~~~~~~~~~~~~~~il~~lY~~di  124 (161)
T d1paqa_          82 QAFDE-EEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDI  124 (161)
T ss_dssp             TCCSH-HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred             HcCCc-HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHhhch
Confidence            99999 99999999999999864  4668999999999999997

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.1e-26  Score=167.42  Aligned_cols=115  Identities=17%  Similarity=0.184  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHHhcC
Q psy17900         39 KKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTD  118 (157)
Q Consensus        39 ~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~  118 (157)
                      .++++++|.+++++|.++++|+.|||+.+.+++++++++|+++|+++|.++.+.+.   ..+.+.+++++|+|||.+|++
T Consensus         4 ~~~l~~~L~~~l~e~~~~~~i~~wIk~~~~~~~~~~~~~i~aL~~~v~~~~~~~~~---~~~~~~~~l~k~~~ll~~~~~   80 (127)
T d1ug3a2           4 SEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFET---PLRVDVAVLKARAKLLQKYLC   80 (127)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHTEECSS---SCEECHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHHHccC---cHHHHHHHHHHHHHHHHHHhC
Confidence            35899999999999999999999999999999999999999999999988743322   123446789999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900        119 TAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL  157 (157)
Q Consensus       119 ~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV  157 (157)
                      +. +.|+.+|+++|+|||++.+++++|++|++.|||.||
T Consensus        81 ~~-~~ql~~L~~lQ~~~~~~~~~~~~~~~i~~~LYd~dv  118 (127)
T d1ug3a2          81 DE-QKELQALYALQALVVTLEQPPNLLRMFFDALYDEDV  118 (127)
T ss_dssp             SH-HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTS
T ss_pred             Cc-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence            99 999999999999999999999999999999999997

>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.013  Score=46.96  Aligned_cols=94  Identities=13%  Similarity=0.210  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhH
Q psy17900         41 ELQEQLEEQISEGASIKDIVADIREIANKHCIP--------DQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPL  112 (157)
Q Consensus        41 el~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~--------~~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pL  112 (157)
                      .+..+|..++..-.++++|+.+|++......-.        ..=.+.++++|++...   +|  ... -....|.+|+++
T Consensus        19 ~~a~~L~~~ir~K~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~vfvqtll~~G---SK--SfS-H~~~~lery~~~   92 (310)
T d1h2vc3          19 SVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA---AK--SFS-HSFSALAKFHEV   92 (310)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHS---TT--CHH-HHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHc---cc--hHH-HHHHHHHHHHHH
Confidence            477789999999999999999998764433221        1236888999998775   22  112 456778999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHhhhcchh
Q psy17900        113 FGAFTDTAPRAELALMLKVQEFCYENMNL  141 (157)
Q Consensus       113 L~~F~~~~~~~ql~LL~kvQ~~Cye~~~~  141 (157)
                      |...+.+. ..|.++|..|-.|...+...
T Consensus        93 lk~l~~~~-~~q~~il~~v~~~W~~~~q~  120 (310)
T d1h2vc3          93 FKTLAESD-EGKLHVLRVMFEVWRNHPQM  120 (310)
T ss_dssp             HHHHTSSH-HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCH-HHHHHHHHHHHHHHhcCCcc
Confidence            99999999 99999999999998887544