Psyllid ID: psy1832

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWGKIRL
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccEEEccEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccEcc
Coil and Loop (DISEMBL)
MHLTQILLRgarkypkgnifrgkyrivepVTHLRKAIKIEEFKIEERNMfllrhpylteeeELVHLKDLERNENFRRERRALKLQKFIKhtkltdhlsdlryqdkwgkirl
Flexible Loop (DISEMBL)
mhltqillrgarkypkgnifrgkyrivepvthlrKAIKIEEFKIEERNMFLLRhpylteeeelvhlkdlernenfRRERRALKLqkfikhtkltdhlsdlryqdkwgkirl
Low Complexity Region (SEG)
MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRkaikieefkieeRNMFLLRHPYLTEEEELVHLKDLernenfrrerrALKLQKFIKHTKLTDHLSDLRYQDKWGKIRL
Disordered region (IsUnstruct)
****QILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKW*****
Disordered Region (DISOPRED)
MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT**************ENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWGKIR*
Disordered Region (DISEMBL)
MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWGKIRL
Disordered Region (DISPRO)
*HLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWGKIRL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWGKIRL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q9CQF8	102	Ribosomal protein 63, mit	yes	N/A	0.918	1.0	0.336	5e-06
Q6PBR7	103	Ribosomal protein 63, mit	yes	N/A	0.909	0.980	0.330	0.0006

>sp|Q9CQF8|RT63_MOUSE Ribosomal protein 63, mitochondrial OS=Mus musculus GN=Mrp63 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           M LT +LLRG  + P G  + GK+R    V+   K   I   ++E  N + L  PY+T E
Sbjct: 1   MFLTAVLLRG--RIP-GRQWIGKHRRPRTVSFQAKESMIRRLEVEAENHYWLSMPYMTAE 57

Query: 61  EELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWG 107
           +E  H    ER        +A    KF KH  + D L  L    KW 
Sbjct: 58  QECGHAA--ERRAQAFEAIKAAATSKFPKHRYIADQLDHLNISKKWS 102

Mus musculus (taxid: 10090)

>sp|Q6PBR7|RT63_DANRE Ribosomal protein 63, mitochondrial OS=Danio rerio GN=mrp63 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           M LT  LLR   K   G  + GKYR   PVT   K   I+  + E  N + +  P++T E
Sbjct: 1   MFLTLALLR---KGIPGKQWIGKYRRPRPVTWQIKRNVIKRLEQEAENEYWISRPFMTLE 57

Query: 61  EELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
           +E  H    +R E   ++ +A +  KF +H  + D L+ LR    W
Sbjct: 58  QERGH--AAQRREWMWQQIKAERQAKFPEHKYIADQLNHLRVTKTW 101

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
328702455	106	PREDICTED: ribosomal protein 63, mitocho	0.927	0.971	0.443	3e-15
332024821	110	Ribosomal protein 63, mitochondrial [Acr	0.774	0.781	0.428	2e-08
357628305	106	hypothetical protein KGM_14411 [Danaus p	0.927	0.971	0.398	4e-08
3947670	106	EG:63B12.11 [Drosophila melanogaster]	0.936	0.981	0.373	6e-08
20128893	106	CG14817 [Drosophila melanogaster] gi|729	0.936	0.981	0.373	6e-08
195347737	106	GM18946 [Drosophila sechellia] gi|195564	0.936	0.981	0.373	1e-07
195132981	106	GI21440 [Drosophila mojavensis] gi|19390	0.936	0.981	0.364	5e-07
195477934	106	GE17002 [Drosophila yakuba] gi|194187870	0.936	0.981	0.364	6e-07
194912704	106	GG12674 [Drosophila erecta] gi|190648235	0.936	0.981	0.355	6e-07
195469824	106	GE16502 [Drosophila yakuba] gi|194187360	0.936	0.981	0.364	7e-07

>gi|328702455|ref|XP_003241907.1| PREDICTED: ribosomal protein 63, mitochondrial-like [Acyrthosiphon pisum]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 3/106 (2%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           M LT +L     K P+G+IF+GK+R+V+PVT L    K+ + + EE+NMF LRH YLT E
Sbjct: 1   MRLTDVLWT---KLPRGHIFKGKHRLVKPVTGLDIHKKLRDLQREEQNMFYLRHSYLTRE 57

Query: 61  EELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
           E   H ++  R E + R+ + L+ +KF KH  + +HLS LR  D W
Sbjct: 58  ESYGHSQEQGRFEKWMRKWKVLQAEKFGKHKSIENHLSHLRSTDGW 103

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024821|gb|EGI65009.1| Ribosomal protein 63, mitochondrial [Acromyrmex echinatior]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 20  FRGKYRIVE-PVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDL---ERNENF 75
           FRGKYRIV+ P  H    +K ++F+ EE+NM +LRHPYLT E+   H+KD+    R +NF
Sbjct: 20  FRGKYRIVKKPSMHDLLKMK-KDFEREEQNMLILRHPYLTVEQSQGHMKDMYPKTRKQNF 78

Query: 76  RRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
             + RA   QKF K   + + L  +R  + W
Sbjct: 79  LEKVRAENRQKFQKEITIAERLCHMRVTEAW 109

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628305|gb|EHJ77694.1| hypothetical protein KGM_14411 [Danaus plexippus]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPV--THLRKAIKIEEFKIEERNMFLLRHPYLT 58
           M L+ IL R     P G+IFRGK R+V+ V   HLR+    ++F +EE+NMF LRHPYLT
Sbjct: 1   MKLSSILFR-RNLLPNGHIFRGKDRLVKRVEPKHLRQLE--QDFTVEEQNMFYLRHPYLT 57

Query: 59  EEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
           E E   H K L + E    +   ++ Q F +   + + L  LR  + W
Sbjct: 58  EAESYGHSKALGKQEARINKLHDIRRQIFKEDVTIYERLKHLRVNESW 105

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3947670|emb|CAA15941.1| EG:63B12.11 [Drosophila melanogaster]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           MHLT I L   +K   G+IFRGK R+V+PV+         E++ +E+ M LLRHPYLT E
Sbjct: 1   MHLTLINL--FKKTVPGHIFRGKRRLVKPVSQRAMDTLTREYERQEQVMLLLRHPYLTME 58

Query: 61  EELVHLKDLERNENF-RRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
           +   H K+L++ E    R      L+K   H  + + L+ L+ ++ W
Sbjct: 59  QSFGHAKELQKREKLVARWTDEQTLRKMKPHVTIEERLNQLKIKEAW 105

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20128893|ref|NP_569953.1| CG14817 [Drosophila melanogaster] gi|7290218|gb|AAF45680.1| CG14817 [Drosophila melanogaster] gi|330340469|gb|AEC11521.1| GM31526p [Drosophila melanogaster]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           MHLT I L   +K   G+IFRGK R+V+PV+         E++ +E+ M LLRHPYLT E
Sbjct: 1   MHLTLINL--FKKTVPGHIFRGKRRLVKPVSQRAMDTLTHEYERQEQVMLLLRHPYLTME 58

Query: 61  EELVHLKDLERNENF-RRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
           +   H K+L++ E    R      L+K   H  + + L+ L+ ++ W
Sbjct: 59  QSFGHAKELQKREKLVARWTDEQTLRKMKPHVTIEERLNQLKIKEAW 105

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195347737|ref|XP_002040408.1| GM18946 [Drosophila sechellia] gi|195564652|ref|XP_002105928.1| GD16410 [Drosophila simulans] gi|194121836|gb|EDW43879.1| GM18946 [Drosophila sechellia] gi|194203293|gb|EDX16869.1| GD16410 [Drosophila simulans]

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           MHLT I L   +K   G+IFRGK R+V+PV+         E++ +E+ M LLRHPYLT E
Sbjct: 1   MHLTLINL--FKKTVPGHIFRGKRRLVKPVSQRAMDTLTREYERQEQVMLLLRHPYLTLE 58

Query: 61  EELVHLKDLE-RNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
           +   H K+L+ R++   R      L+K   H  + + L+ L+ ++ W
Sbjct: 59  QSFGHAKELQKRDKLVARWTDEQTLRKMKPHVTIEERLNQLKIKEAW 105

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132981|ref|XP_002010918.1| GI21440 [Drosophila mojavensis] gi|193907706|gb|EDW06573.1| GI21440 [Drosophila mojavensis]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           M LT  L+   +K   G+IFRGK R+V+PV+       I E++ +E+ MFLLRHPYLT E
Sbjct: 1   MQLT--LINFFKKTVPGHIFRGKRRLVKPVSKRSMDTLIREYERQEQIMFLLRHPYLTLE 58

Query: 61  EELVHLKDLERNENFRRERRALKLQKFIK-HTKLTDHLSDLRYQDKW 106
           +   H K+L++ E    +    + +  +K H  + + L  LR ++ W
Sbjct: 59  QSSGHAKELQKREKLVAKWTDEQTRSKLKPHVTIEERLQHLRVKEAW 105

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195477934|ref|XP_002100346.1| GE17002 [Drosophila yakuba] gi|194187870|gb|EDX01454.1| GE17002 [Drosophila yakuba]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           MHLT I L   +K   G+IFRGK R+V+PV+         E++ +E+ M LLRHPYLT E
Sbjct: 1   MHLTLINL--FKKTVPGHIFRGKRRLVKPVSQRAMDTLTREYERQEQVMLLLRHPYLTLE 58

Query: 61  EELVHLKDLE-RNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
           +   H K+L+ R++   +      L+K   H  + + L+ L+ ++ W
Sbjct: 59  QSSGHAKELQKRDKLVAKWTDEQTLRKMKPHVTIEERLNQLKIKEAW 105

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194912704|ref|XP_001982559.1| GG12674 [Drosophila erecta] gi|190648235|gb|EDV45528.1| GG12674 [Drosophila erecta]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 3/107 (2%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           MHLT I L   +K   G+IFRGK R+V+PV+         E++ +E+ M LLRHPY+T E
Sbjct: 1   MHLTLINL--FKKTVPGHIFRGKRRLVKPVSQRAMDTLTREYERQEQVMLLLRHPYITLE 58

Query: 61  EELVHLKDLERNENF-RRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
           +   H K+L++ E    +      L+K   H  + + L+ L+ ++ W
Sbjct: 59  QSSGHAKELQKREKLVAKWTDEQTLRKMKPHVTIEERLNQLKIKEAW 105

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195469824|ref|XP_002099836.1| GE16502 [Drosophila yakuba] gi|194187360|gb|EDX00944.1| GE16502 [Drosophila yakuba]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 1   MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
           MHLT I L   +K   G+IFRGK R+V+PV+         E++ +E+ M LLRHPYLT E
Sbjct: 1   MHLTLINL--FKKTVPGHIFRGKRRLVKPVSQRAMDTLTREYERQEQIMLLLRHPYLTLE 58

Query: 61  EELVHLKDLE-RNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
           +   H K+L+ R++   +      L+K   H  + + L+ L+ ++ W
Sbjct: 59  QSSGHAKELQKRDKLVAKWTDEQTLRKMKPHVTIEERLNQLKIKEAW 105

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
UNIPROTKB|E1C178	102	MRP63 "Uncharacterized protein	0.909	0.990	0.330	2.3e-07
MGI|MGI:1915090	102	Mrp63 "mitochondrial ribosomal	0.909	0.990	0.292	2.4e-05
UNIPROTKB|Q3ZC04	102	MRP63 "Ribosomal protein 63, m	0.909	0.990	0.292	0.00013

UNIPROTKB|E1C178 MRP63 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 35/106 (33%), Positives = 46/106 (43%)

Query:     1 MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRXXXXXXXXXXXXRNMFLLRHPYLTEE 60
             M LT  LLR  ++ P G  + GKYR    VT                N + L  PYLT +
Sbjct:     1 MFLTLALLR--KRIP-GKQWIGKYRRPRVVTTTMKQAMIRRLEIEAENEYWLSRPYLTRQ 57

Query:    61 EELVHLKDLXXXXXXXXXXXALKLQKFIKHTKLTDHLSDLRYQDKW 106
             EE  H ++            ALK  KF +H  ++DHL+ L    KW
Sbjct:    58 EECNHNRE--ARVARWEAFKALKSSKFPEHRYMSDHLNHLNVSKKW 101

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

MGI|MGI:1915090 Mrp63 "mitochondrial ribosomal protein 63" [Mus musculus (taxid:10090)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 31/106 (29%), Positives = 41/106 (38%)

Query:     1 MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRXXXXXXXXXXXXRNMFLLRHPYLTEE 60
             M LT +LLRG  + P G  + GK+R    V+                N + L  PY+T E
Sbjct:     1 MFLTAVLLRG--RIP-GRQWIGKHRRPRTVSFQAKESMIRRLEVEAENHYWLSMPYMTAE 57

Query:    61 EELVHLKDLXXXXXXXXXXXALKLQKFIKHTKLTDHLSDLRYQDKW 106
             +E  H  +            A    KF KH  + D L  L    KW
Sbjct:    58 QECGHAAERRAQAFEAIKAAATS--KFPKHRYIADQLDHLNISKKW 101

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q3ZC04 MRP63 "Ribosomal protein 63, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 31/106 (29%), Positives = 41/106 (38%)

Query:     1 MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRXXXXXXXXXXXXRNMFLLRHPYLTEE 60
             M LT +L RG  + P G  + GK+R    V+ L              N + L  P+LT E
Sbjct:     1 MFLTALLCRG--RIP-GRQWIGKHRRPRTVSALAKQNMIRRLEIEAENHYWLSRPFLTAE 57

Query:    61 EELVHLKDLXXXXXXXXXXXALKLQKFIKHTKLTDHLSDLRYQDKW 106
             +E  H               A +  KF  H +L D L  L    KW
Sbjct:    58 QERGHAA--ARRAAAFEALKAAQAAKFPAHRRLEDQLDHLNVTRKW 101


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.143   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111        88   0.00091  102 3  11 22  0.40    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  104 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.81u 0.08s 7.89t   Elapsed:  00:00:14
  Total cpu time:  7.81u 0.08s 7.89t   Elapsed:  00:00:14
  Start:  Thu Aug 15 12:20:06 2013   End:  Thu Aug 15 12:20:20 2013

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQF8	RT63_MOUSE	No assigned EC number	0.3364	0.9189	1.0	yes	N/A
Q6PBR7	RT63_DANRE	No assigned EC number	0.3301	0.9099	0.9805	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PF14978	91	MRP-63: Mitochondrial ribosome protein 63	100.0

>PF14978 MRP-63: Mitochondrial ribosome protein 63

Probab=100.00  E-value=1.6e-46  Score=260.44  Aligned_cols=91  Identities=35%  Similarity=0.513  Sum_probs=85.6

Q ss_pred             CCceeeeccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhhhHHHHHHHHHHHHHHHHHHcCCCCCcchhh
Q psy1832          16 KGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTD   95 (111)
Q Consensus        16 ~G~~w~GK~R~~~~vs~~~k~~~~~rle~E~enm~~Ls~PYLT~EqE~gh~~~l~~r~~~~~~~~~~~~~Kf~~H~ti~d   95 (111)
                      ||+|||||||+|++||+++|++|+++|+||||||||||+||||+|||+||++++....+.++.+++++++|||+|+||+|
T Consensus         1 pG~~w~GKhR~~r~vt~~~k~~~~~~le~E~eN~~~Ls~PYLT~EQE~gh~~e~r~~k~~~~~~~~~~~~kf~~h~~i~d   80 (91)
T PF14978_consen    1 PGKQWIGKHRRPRKVTWQMKENMIRRLEIEEENMYWLSRPYLTAEQEYGHAKERRKEKAFFEWIKEKKRSKFPPHKTIAD   80 (91)
T ss_pred             CCCcccCcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHcchHHHHhHHHHHHHHHHHHHHccCCCcccHHH
Confidence            39999999999999999999999999999999999999999999999999995554337788889988999999999999


Q ss_pred             hhhhhhhhccc
Q psy1832          96 HLSDLRYQDKW  106 (111)
Q Consensus        96 ~L~hL~v~~~W  106 (111)
                      ||+||||+++|
T Consensus        81 ~L~hL~v~~~W   91 (91)
T PF14978_consen   81 RLNHLNVTKKW   91 (91)
T ss_pred             HHhhhcccCCC
Confidence            99999999999

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00