Psyllid ID: psy1914
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 211 | 2.2.26 [Sep-21-2011] | |||||||
| Q4FZX7 | 269 | Signal recognition partic | yes | N/A | 0.990 | 0.776 | 0.385 | 5e-35 | |
| P47758 | 269 | Signal recognition partic | yes | N/A | 0.990 | 0.776 | 0.362 | 2e-33 | |
| Q9Y5M8 | 271 | Signal recognition partic | yes | N/A | 0.990 | 0.771 | 0.358 | 1e-32 | |
| Q54XX1 | 290 | Signal recognition partic | yes | N/A | 0.876 | 0.637 | 0.303 | 9e-13 | |
| O13950 | 227 | Signal recognition partic | yes | N/A | 0.696 | 0.647 | 0.333 | 7e-11 | |
| P36057 | 244 | Signal recognition partic | yes | N/A | 0.933 | 0.807 | 0.287 | 2e-09 | |
| Q94231 | 179 | ADP-ribosylation factor 1 | no | N/A | 0.582 | 0.687 | 0.283 | 3e-08 | |
| P40994 | 183 | ADP-ribosylation factor 3 | no | N/A | 0.658 | 0.759 | 0.293 | 6e-08 | |
| Q6P068 | 179 | ADP-ribosylation factor-l | no | N/A | 0.573 | 0.675 | 0.296 | 6e-08 | |
| Q9SHU5 | 205 | Probable ADP-ribosylation | no | N/A | 0.563 | 0.580 | 0.284 | 1e-07 |
| >sp|Q4FZX7|SRPRB_RAT Signal recognition particle receptor subunit beta OS=Rattus norvegicus GN=Srprb PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 130/218 (59%), Gaps = 9/218 (4%)
Query: 3 FFKF---RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY---EKKN 56
F+KF RKSSQ+ VL GL SGKTLLF RL+ +Y ++ TS+ ++ + +
Sbjct: 51 FWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNS 110
Query: 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSR 116
+ ++DLPG + LR +F D++KSSA+ +V+V+DS+T Q+ ++DVAE LY +L D +
Sbjct: 111 LTLIDLPGHESLRLQFLDRFKSSARAVVFVVDSATFQREVKDVAEFLYQVLIDSMALKNT 170
Query: 117 VNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDF 176
LV CNKQD +AKS+ +++ L+KELN +R T+S + + LG K+F
Sbjct: 171 PAFLVACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEF 230
Query: 177 EFSDLYNQVSFCDTT---GLDSASEYDVEQLQDWMVTL 211
EFS L +V F + + G A DV+ L+ W+ +
Sbjct: 231 EFSQLPLKVEFLECSAKGGRGDAGSADVQDLEKWLAKI 268
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Rattus norvegicus (taxid: 10116) |
| >sp|P47758|SRPRB_MOUSE Signal recognition particle receptor subunit beta OS=Mus musculus GN=Srprb PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 129/218 (59%), Gaps = 9/218 (4%)
Query: 3 FFKF---RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY---EKKN 56
F+KF RKSSQ+ VL GL SGKTLLF RL+ +Y ++ TS+ ++ + +
Sbjct: 51 FWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNS 110
Query: 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSR 116
+ ++DLPG + LR + D++KSSA+ +V+V+DS+ Q+ ++DVAE LY +L D +
Sbjct: 111 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS 170
Query: 117 VNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDF 176
++L+ CNKQD +AKS+ +++ L+KELN +R T+S + + LG K+F
Sbjct: 171 PSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEF 230
Query: 177 EFSDLYNQVSFCDTT---GLDSASEYDVEQLQDWMVTL 211
EFS L +V F + + G D++ L+ W+ +
Sbjct: 231 EFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 268
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Mus musculus (taxid: 10090) |
| >sp|Q9Y5M8|SRPRB_HUMAN Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 126/215 (58%), Gaps = 6/215 (2%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY---EKKNIKI 59
+ R+SSQ+ VLL GL SGKTLLF RL+ Y ++ TS+ ++ + ++ +
Sbjct: 56 LIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTL 115
Query: 60 VDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119
+DLPG + LR +F +++KSSA+ IV+V+DS+ Q+ ++DVAE LY +L D + +
Sbjct: 116 IDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSF 175
Query: 120 LVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFS 179
L+ CNKQD +AKS+ +++ L+KELN +R T+S + + LG K+FEFS
Sbjct: 176 LIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFS 235
Query: 180 DLYNQVSFCDTT---GLDSASEYDVEQLQDWMVTL 211
L +V F + + G D++ L+ W+ +
Sbjct: 236 QLPLKVEFLECSAKGGRGDVGSADIQDLEKWLAKI 270
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Homo sapiens (taxid: 9606) |
| >sp|Q54XX1|SRPRB_DICDI Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 14 VLLSGLSLSGKTLLFARLV-YSKYFESCTSLKENVGNFTYE-KKNIKIVDLPGEDRLRNK 71
+ + GLS +GKT L L K + TS+ N G + E KK + I+D+PG + +
Sbjct: 88 IAILGLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYITENKKKLPIIDVPGNGKAKAS 147
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131
+ S++ I+YV+D +T A+ LY IL + V ++ +LV NK D
Sbjct: 148 L-PKILSNSACIIYVIDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVLVFNNKMDLDST 206
Query: 132 KSSSVVKTLLQKELNLVRRTKS------NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQV 185
+ VK +L++EL+ +RRT+ Q ED D+ +LG F+F L N V
Sbjct: 207 IDTEQVKNILERELDDLRRTRGATPIVLGQEEDKKDI-----YLGIEGTPFQFDHLPNDV 261
Query: 186 SFCDTTGLDSASEYDVEQLQD 206
F + G S S +++++ D
Sbjct: 262 QFSN--GSASPSNGELKEIDD 280
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Dictyostelium discoideum (taxid: 44689) |
| >sp|O13950|SRPB_SCHPO Signal recognition particle receptor subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp102 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 18/165 (10%)
Query: 2 LFFKFRKSSQK---VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIK 58
+FF RK+ QK V L G S SGKT LF L+Y + + S++ N + Y
Sbjct: 26 IFFT-RKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY---GAW 81
Query: 59 IVDLPGEDR----LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLY-VILADPQVQ 113
+VDLPG R + KF Y + K +V+VL+S+T+ + + +V L+ IL + +
Sbjct: 82 LVDLPGHPRAKRWITTKFSGNY--NVKAVVFVLNSATIDRDVHEVGLMLFDTIL---KCR 136
Query: 114 SSRV-NILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157
V ++L+ CNK D A+ + ++ LL+ EL+ + K+ QLE
Sbjct: 137 KHHVPHLLIACNKFDLFTAQPAEKIQQLLKAELHNILEEKNLQLE 181
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P36057|SRPB_YEAST Signal recognition particle receptor subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP102 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGED 66
+KS Q ++++G SGKT L L + S +E + Y+ + +VD PG
Sbjct: 34 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAADYDGSGVTLVDFPGHV 92
Query: 67 RLRNKFFDQYKSSAK---GIVYVLDSSTVQKTLRDVAESLYVILADPQVQ-SSRVNILVC 122
+LR K D K+ AK G+++++DS+ K L AE L IL+ + + ++IL+
Sbjct: 93 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 152
Query: 123 CNKQDQTLAKSSSVVKTLLQKELNLV--RRTKS-NQLE---DTNDVAANQTFLGNPDKDF 176
CNK + A+ S +K L+ E+ V RR KS N++E + D A N + F
Sbjct: 153 CNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGF 212
Query: 177 EFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208
+F++L V + S ++ + Q ++W+
Sbjct: 213 KFANLEASVVAFE----GSINKRKISQWREWI 240
|
Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q94231|ARF11_CAEEL ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 15 LLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFD 74
L+ GL +GKT + +L ++ + ++ NV T++K + + D+ G+ ++R +
Sbjct: 21 LMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIR-ALWK 79
Query: 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134
Y + +V+V+DSS +++ + + E L+ +LA+P++ S ++LV NKQD A+S
Sbjct: 80 YYFPNTTTLVFVVDSSDIER-IPEAKEELFSLLAEPELADS--HLLVFANKQDMPNARSP 136
Query: 135 SVVKTLL 141
+ + LL
Sbjct: 137 AELTQLL 143
|
GTP-binding protein that may be involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Caenorhabditis elegans (taxid: 6239) |
| >sp|P40994|ARF3_YEAST ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPG 64
K S + +L+ GL +GKT + +L +K S ++ NV TY+ + D+ G
Sbjct: 11 KLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGG 70
Query: 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCN 124
+ RLR + Y + +++V+DSS + + + E LY I+ + ++++ V +LV N
Sbjct: 71 QQRLR-PLWRHYFPATTALIFVIDSSA-RNRMEEAKEELYSIIGEKEMEN--VVLLVWAN 126
Query: 125 KQDQTLAKSSSVVKTLLQKELNL 147
KQD A V L+ E NL
Sbjct: 127 KQDLKDAMKPQEVSDFLELEKNL 149
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q6P068|ARL5C_MOUSE ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDL 62
+ S + V++ GL +GKT + + + ++ +C+++ NV K + + DL
Sbjct: 8 LMRIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDL 67
Query: 63 PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122
G++ LR+ +D Y S+A+ ++ V+D ST + L E LY +LA +Q++ V L+
Sbjct: 68 GGQEALRST-WDTYYSNAEFVILVID-STDRNRLLTTREELYKMLAHEALQNASV--LIF 123
Query: 123 CNKQD 127
NKQD
Sbjct: 124 ANKQD 128
|
Binds and exchanges GTP and GDP. Mus musculus (taxid: 10090) |
| >sp|Q9SHU5|ARF4_ARATH Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPG 64
+F S+ +L+ GL SGKT + +L + + ++ N+ Y+ N + D+ G
Sbjct: 11 RFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGG 70
Query: 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCN 124
++++R K + Y +A+G+++V+DSS ++ L + L+ IL D +++ + +LV N
Sbjct: 71 QEKIR-KLWRHYFQNAQGLIFVVDSSDSER-LSEARNELHRILTDNELEGA--CVLVFAN 126
Query: 125 KQD 127
KQD
Sbjct: 127 KQD 129
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 211 | ||||||
| 389609099 | 252 | signal recognition particle receptor bet | 0.995 | 0.833 | 0.550 | 1e-55 | |
| 307198442 | 287 | Signal recognition particle receptor sub | 0.976 | 0.717 | 0.509 | 2e-55 | |
| 148298679 | 280 | signal recognition particle receptor bet | 0.985 | 0.742 | 0.530 | 6e-55 | |
| 307170627 | 244 | Signal recognition particle receptor sub | 0.971 | 0.840 | 0.495 | 4e-54 | |
| 332023318 | 246 | Signal recognition particle receptor sub | 0.990 | 0.849 | 0.483 | 8e-54 | |
| 156548143 | 286 | PREDICTED: signal recognition particle r | 0.990 | 0.730 | 0.488 | 1e-53 | |
| 350409271 | 244 | PREDICTED: signal recognition particle r | 0.971 | 0.840 | 0.509 | 2e-52 | |
| 357603059 | 252 | signal recognition particle receptor bet | 0.981 | 0.821 | 0.537 | 4e-52 | |
| 340729602 | 244 | PREDICTED: signal recognition particle r | 0.971 | 0.840 | 0.504 | 8e-52 | |
| 380021276 | 244 | PREDICTED: LOW QUALITY PROTEIN: signal r | 0.971 | 0.840 | 0.509 | 2e-51 |
| >gi|389609099|dbj|BAM18161.1| signal recognition particle receptor beta [Papilio xuthus] | Back alignment and taxonomy information |
|---|
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/218 (55%), Positives = 156/218 (71%), Gaps = 8/218 (3%)
Query: 1 FLF---FKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNI 57
FLF F R+ ++ VLL+GLS SGKTLLF RL YS+Y ++ TS++ENV ++ K +
Sbjct: 36 FLFWWCFSRRRHLRRSVLLTGLSDSGKTLLFVRLAYSQYRQTFTSMRENVEDYFTSNKTL 95
Query: 58 KIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRV 117
KIVDLPG++RLRNKFFDQYK+SAKGIVYV+DS T+QK +RDVAE LY IL DP +QS+
Sbjct: 96 KIVDLPGQERLRNKFFDQYKNSAKGIVYVVDSVTIQKEIRDVAEYLYTILLDPVIQSNCP 155
Query: 118 NILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE--DTNDVAANQTFLGNPDKD 175
+L+ CNKQDQ +AK S V+K+LL+KELNLVR TKSNQL+ D+N + + +LG KD
Sbjct: 156 PLLILCNKQDQPMAKGSQVIKSLLEKELNLVRVTKSNQLQSVDSNQ-STSSAYLGKLGKD 214
Query: 176 FEFSDLYNQVSF--CDTTGLDSASEYDVEQLQDWMVTL 211
FEFS L +V C D + D++ LQDW+ L
Sbjct: 215 FEFSHLGCRVDIAECSANTADDDNPTDIKALQDWISKL 252
|
Source: Papilio xuthus Species: Papilio xuthus Genus: Papilio Family: Papilionidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307198442|gb|EFN79384.1| Signal recognition particle receptor subunit beta [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 161/210 (76%), Gaps = 4/210 (1%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
F+ ++ RKS+ + +LL+GLS +GKTL++ARL+ S++ ++ TS+KEN+GN T +++IV
Sbjct: 76 FVVWRRRKSTGQGILLTGLSDTGKTLIYARLICSQFVKTYTSVKENIGNITVNNSSLRIV 135
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+PG++RLRNK+FD+YKSSAKG+VYV+DS T+QK +RDVAE LY +L+DP +Q + + +L
Sbjct: 136 DIPGDERLRNKYFDKYKSSAKGLVYVIDSVTIQKEIRDVAEYLYNLLSDPYMQKN-IPVL 194
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180
+ CNKQDQ +AK +V+KTLL+KE+NL+R TKS+QLE T D ++ FLG KDFEFS
Sbjct: 195 ILCNKQDQVMAKGCAVIKTLLEKEMNLLRMTKSSQLE-TTDASSVNVFLGKQGKDFEFSH 253
Query: 181 LYNQVSFCDTTGL--DSASEYDVEQLQDWM 208
L +Q+ F ++ D E D+++L+ W+
Sbjct: 254 LDSQIEFANSYVFNKDPNVEVDIDELKKWL 283
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|148298679|ref|NP_001091817.1| signal recognition particle receptor beta subunit [Bombyx mori] gi|111608123|gb|ABH10805.1| signal recognition particle receptor beta subunit [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 112/211 (53%), Positives = 146/211 (69%), Gaps = 3/211 (1%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
+ F R + + VLL GLS SGKTLLF RL YS+Y ++ TS+KEN+ + K +KIV
Sbjct: 37 WWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIV 96
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
DLPG++RLRNKFF+Q+KSSAKGIV+V+DS +QK +RDVAE LY IL DP +Q + +L
Sbjct: 97 DLPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLL 156
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ-TFLGNPDKDFEFS 179
+ CNKQDQ LAK S V+K LL+KE+NLVR TKSNQL+ + N +FLG KDFEFS
Sbjct: 157 ILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEGNTGSFLGKEGKDFEFS 216
Query: 180 DLYNQVSF--CDTTGLDSASEYDVEQLQDWM 208
+ N+V F C D D++ LQ+W+
Sbjct: 217 HIRNKVEFAECSANTNDDEKSADIKPLQEWI 247
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307170627|gb|EFN62811.1| Signal recognition particle receptor subunit beta [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 157/210 (74%), Gaps = 5/210 (2%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
F ++ R+S +LL+GLS SGKTL++ARL+ SK+ ++ TS+KEN+G+ +++IV
Sbjct: 34 FALWRKRRSIGHNILLTGLSDSGKTLIYARLLCSKFVKTYTSVKENIGDIAINNTSLRIV 93
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+PG++RLRNK+FD+YKSSA+G+VYV+DS T+QK +RDVAE LY +L+D VQ +V IL
Sbjct: 94 DIPGDERLRNKYFDKYKSSARGLVYVIDSVTIQKEIRDVAEYLYNVLSDSNVQ--KVPIL 151
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180
+ CNKQDQT+AK V++TLL+KE+NL+R TK++QLE T D ++ FLG KDFEFS
Sbjct: 152 ILCNKQDQTMAKGCMVIRTLLEKEMNLLRMTKTSQLEAT-DASSTNVFLGKQGKDFEFSH 210
Query: 181 LYNQVSFCDTTGL--DSASEYDVEQLQDWM 208
L + + F +++ D+ + ++E+L +W+
Sbjct: 211 LDSHIDFAESSAFNKDAQTSANIEELNNWL 240
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332023318|gb|EGI63572.1| Signal recognition particle receptor subunit beta [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 160/213 (75%), Gaps = 4/213 (1%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
F+F++ RKS ++LL+GLS SGKTL++ARL+ S++ ++ TS+KEN+G+ T + ++IV
Sbjct: 35 FIFWRKRKSKGNIILLTGLSDSGKTLIYARLLCSQFVKTYTSVKENIGDITINYRFLRIV 94
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+PG++RLR K+FD+YKSS KG+VY++D+ T+QK +RDVAE LY +L+DP +Q + V +L
Sbjct: 95 DIPGDERLRGKYFDKYKSSVKGLVYIIDAVTIQKEIRDVAEYLYNLLSDPDIQKN-VPVL 153
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180
+ CNKQDQT+AK V+K LL+KE+NL+R TK++QLE T D ++ FLG K FEFS
Sbjct: 154 IMCNKQDQTMAKGCYVIKALLEKEMNLLRMTKTSQLEAT-DASSTNVFLGKQGKHFEFSH 212
Query: 181 LYNQVSFCDT--TGLDSASEYDVEQLQDWMVTL 211
L +Q+ F ++ + DS ++E+L+ W++ +
Sbjct: 213 LDSQIDFVESYASNDDSQMSANIEELKKWLIKI 245
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156548143|ref|XP_001606718.1| PREDICTED: signal recognition particle receptor subunit beta-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 156/213 (73%), Gaps = 4/213 (1%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
F ++ R S VLL+GL +GKTL++ARL+++KY ++ TS+KEN+G+ ++KIV
Sbjct: 75 FALWRRRTSVGHNVLLTGLCDAGKTLIYARLMHTKYVQTHTSVKENIGDALEYNSSVKIV 134
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+PG +RLR K+FD+YK+SAKG+V+++DSST+QK +RD AE LY +L+DP + S + +L
Sbjct: 135 DIPGHERLRYKYFDKYKNSAKGLVFIIDSSTIQKDIRDAAEYLYTLLSDPSL-SRNIPVL 193
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180
+ CNKQD TLAK S+V+KTLL+KE+NL+R TK++QLE T D +++ +LG KDFEFS
Sbjct: 194 ILCNKQDHTLAKGSNVIKTLLEKEMNLLRVTKTSQLEAT-DASSSNIYLGKTGKDFEFSH 252
Query: 181 LYNQVSFCDTTGL--DSASEYDVEQLQDWMVTL 211
L +V F +++ D+ + D+EQL W+ L
Sbjct: 253 LDKKVDFAESSAFIKDAETPADIEQLTSWLTKL 285
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350409271|ref|XP_003488676.1| PREDICTED: signal recognition particle receptor subunit beta-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 149/210 (70%), Gaps = 5/210 (2%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
F + R+S +LL+GLS +GKTL++ARL+ SK+ ++ TS+KEN G+ +++KIV
Sbjct: 34 FAIWHKRRSIGNSILLTGLSDAGKTLIYARLLCSKFVKTHTSVKENTGDIIINNRSLKIV 93
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+PG +RLR KFFDQ+K SAKG+VYV+DS T QK +RDVAE LY +L DP + + +IL
Sbjct: 94 DIPGHERLRYKFFDQFKLSAKGLVYVIDSVTFQKDIRDVAEFLYNLLCDPAIH--KKSIL 151
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180
V CNKQDQT+AK ++V+KTLL+KE+NL+R TK++QLE T D +A FLG KDF+FS
Sbjct: 152 VLCNKQDQTMAKGAAVIKTLLEKEMNLLRMTKTSQLEAT-DASATNVFLGKQGKDFDFSH 210
Query: 181 LYNQVSF--CDTTGLDSASEYDVEQLQDWM 208
L + F C DS + +EQL +W+
Sbjct: 211 LDTNIEFAECSAYNKDSETSAGIEQLNNWL 240
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357603059|gb|EHJ63620.1| signal recognition particle receptor beta subunit [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/212 (53%), Positives = 150/212 (70%), Gaps = 5/212 (2%)
Query: 4 FKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLP 63
F R+ ++ VLL+GLS SGKTLLF RL YS+Y ++ TS+KEN+ + ++IVDLP
Sbjct: 42 FSRRRHLRRSVLLTGLSDSGKTLLFVRLSYSQYRQTFTSMKENIEEYITSNNALRIVDLP 101
Query: 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCC 123
G++RLRNKFFDQYKSSAK IVYV+DS T+QK +RDVAE LY IL D VQS+ L+ C
Sbjct: 102 GQERLRNKFFDQYKSSAKAIVYVVDSVTIQKEIRDVAEYLYTILLDSVVQSNCPQFLILC 161
Query: 124 NKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ-TFLGNPDKDFEFSDLY 182
NKQDQ +AK S V+K LL+KELNLVR TKS+QL+ + +N ++LG KDFEFS L
Sbjct: 162 NKQDQPMAKGSQVIKGLLEKELNLVRVTKSSQLQSVDSSQSNNSSYLGKLGKDFEFSHLN 221
Query: 183 NQVSFCDT---TGLDSASEYDVEQLQDWMVTL 211
+V F ++ TG D + D++ L+DW+ L
Sbjct: 222 CKVEFAESSANTG-DDDNPADMKALKDWISKL 252
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340729602|ref|XP_003403087.1| PREDICTED: signal recognition particle receptor subunit beta-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 148/210 (70%), Gaps = 5/210 (2%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
F + +S +LL+GLS +GKTL++ARL+ SK+ ++ TS+KEN G+ +++KIV
Sbjct: 34 FAIWHRTRSIGNSILLTGLSDAGKTLIYARLLCSKFVKTHTSVKENTGDIIINNRSLKIV 93
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+PG +RLR KFFDQ+K SAKG+VYV+DS T QK +RDVAE LY +L DP V + +IL
Sbjct: 94 DIPGHERLRYKFFDQFKLSAKGLVYVIDSVTFQKDIRDVAEFLYNLLCDPSVH--KKSIL 151
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180
V CNKQDQT+AK ++V+KTLL++E+NL+R TK++QLE T D +A FLG KDF+FS
Sbjct: 152 VLCNKQDQTMAKGAAVIKTLLEREMNLLRMTKTSQLE-TTDASATNVFLGKQGKDFDFSH 210
Query: 181 LYNQVSF--CDTTGLDSASEYDVEQLQDWM 208
L + F C DS + +EQL +W+
Sbjct: 211 LDTNIEFAECSAYNKDSETSAGIEQLNNWL 240
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380021276|ref|XP_003694496.1| PREDICTED: LOW QUALITY PROTEIN: signal recognition particle receptor subunit beta-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 149/210 (70%), Gaps = 5/210 (2%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
F + R+S +LL+GLS +GKTL++A L+ SK+ ++ TS+KEN+G+ +++KIV
Sbjct: 34 FAIWHKRRSIGNSILLTGLSDAGKTLIYAHLLCSKFVKTHTSVKENIGDIIINNRSLKIV 93
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+PG +RLR KFFDQ+K SAKG+VYV+DS T QK +RDVAE LY +L+D +Q V L
Sbjct: 94 DIPGHERLRYKFFDQFKLSAKGLVYVIDSVTFQKDIRDVAEYLYNLLSDSVIQKKPV--L 151
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180
+ CNKQDQT+AK S V+KTLL+KE+NL+R TK++QLE T D +A FLG +KDF+FS
Sbjct: 152 ILCNKQDQTMAKGSVVIKTLLEKEMNLLRMTKTSQLEAT-DASATNXFLGKQEKDFDFSH 210
Query: 181 LYNQVSF--CDTTGLDSASEYDVEQLQDWM 208
L + F C DS + D+EQL +W+
Sbjct: 211 LDINIEFAECSAYNKDSETSADMEQLNNWL 240
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 211 | ||||||
| FB|FBgn0011509 | 244 | SrpRbeta "Signal recognition p | 0.843 | 0.729 | 0.421 | 1.9e-35 | |
| ZFIN|ZDB-GENE-040718-311 | 266 | srprb "signal recognition part | 0.862 | 0.684 | 0.375 | 3.4e-29 | |
| UNIPROTKB|Q5ZJA5 | 258 | Gga.31975 "Uncharacterized pro | 0.867 | 0.709 | 0.364 | 2.8e-27 | |
| RGD|1304698 | 269 | Srprb "signal recognition part | 0.872 | 0.684 | 0.347 | 2.8e-27 | |
| UNIPROTKB|F1MLG1 | 271 | LOC100138613 "Uncharacterized | 0.872 | 0.678 | 0.331 | 3.2e-26 | |
| UNIPROTKB|F1NL17 | 963 | Gga.31975 "Uncharacterized pro | 0.867 | 0.190 | 0.364 | 4.5e-26 | |
| UNIPROTKB|F1LMP2 | 979 | Tf "Serotransferrin" [Rattus n | 0.872 | 0.187 | 0.347 | 4.7e-26 | |
| MGI|MGI:102964 | 269 | Srprb "signal recognition part | 0.872 | 0.684 | 0.321 | 5.2e-26 | |
| UNIPROTKB|Q9Y5M8 | 271 | SRPRB "Signal recognition part | 0.872 | 0.678 | 0.326 | 1.4e-25 | |
| UNIPROTKB|E2QSM8 | 995 | TF "Uncharacterized protein" [ | 0.872 | 0.184 | 0.324 | 1.4e-23 |
| FB|FBgn0011509 SrpRbeta "Signal recognition particle receptor beta" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 78/185 (42%), Positives = 120/185 (64%)
Query: 28 FARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87
F +L++ K+ + TS+KENVG++ + ++VD+PG R+R+K + YK AKGIV+V+
Sbjct: 65 FMQLIHGKFPATFTSIKENVGDYRTGSASARLVDIPGHYRVRDKCLELYKHRAKGIVFVV 124
Query: 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147
DS T K +RDVA+ LY IL+D Q ++LV CNKQDQT AKS+ V+K+LL+ EL+
Sbjct: 125 DSVTAHKDIRDVADFLYTILSDSATQPC--SVLVLCNKQDQTTAKSAQVIKSLLESELHT 182
Query: 148 VRRTKSNQLEDTNDVAANQTF-LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQD 206
VR T+S +L+ D +++ LG P +DFEFS + + F + SA + +++ L D
Sbjct: 183 VRDTRSRKLQSVGDEDGSKSITLGKPGRDFEFSHIAQNIQFAEA----SAKDTELDPLTD 238
Query: 207 WMVTL 211
W+ L
Sbjct: 239 WLARL 243
|
|
| ZFIN|ZDB-GENE-040718-311 srprb "signal recognition particle receptor, B subunit" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 72/192 (37%), Positives = 113/192 (58%)
Query: 28 FARLVYSKYFESCTSLKENVGNFTYEKKNIK-----IVDLPGEDRLRNKFFDQYKSSAKG 82
F RL+ K+ + TS+ E+ + TY+ K+ + ++D+PG + LR + ++YK A+
Sbjct: 77 FTRLLLGKFVRTQTSITES--SATYKSKSERGNSWTLIDVPGHESLRTQIVEKYKDVARA 134
Query: 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQ 142
IV+V+DSS QK +RDVAE LY IL D + + ++V CNKQD T+AKS+ +++ L+
Sbjct: 135 IVFVVDSSIFQKDVRDVAEFLYSILTDSILAKNAPTLVVACNKQDITMAKSAKLIQQQLE 194
Query: 143 KELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASE---Y 199
KELN +R T+S L + +LG KDFEFS L N+V F + S +E
Sbjct: 195 KELNTLRLTRSAALSSQDGAVGGSVYLGKKGKDFEFSQLANRVEFIECKARGSKTEDGDA 254
Query: 200 DVEQLQDWMVTL 211
D++ L+ + L
Sbjct: 255 DIDALEKCLAKL 266
|
|
| UNIPROTKB|Q5ZJA5 Gga.31975 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 70/192 (36%), Positives = 116/192 (60%)
Query: 28 FARLVYSKYFESCTSLKEN--VGNFTYEK-KNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84
FARL+ +Y ++ TS+ ++ V + +K N+ ++DLPG + LR +F +++K++A+ IV
Sbjct: 67 FARLLTGRYRDTQTSITDSSAVYRVSNDKGTNVTLIDLPGHESLRLQFLERFKAAARAIV 126
Query: 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144
+V+DS Q+ ++DVAE LY +L D V + +L+ CNKQD T+AKS+ +++ L+KE
Sbjct: 127 FVVDSVAFQREVKDVAEFLYQVLVDSTVLKNAPALLIACNKQDVTMAKSAKLIQQQLEKE 186
Query: 145 LNLVRRTKSNQLEDTNDVAAN--QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEY--- 199
LN +R T+S + D +A LG KDF+FS L +V F + + S E
Sbjct: 187 LNTLRVTRS-AAPTSLDASATGGPAQLGKKGKDFDFSQLPMKVEFVECSARGSKGEEGDA 245
Query: 200 DVEQLQDWMVTL 211
D E L+ W+ +
Sbjct: 246 DFEDLEKWLAKI 257
|
|
| RGD|1304698 Srprb "signal recognition particle receptor, B subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 66/190 (34%), Positives = 110/190 (57%)
Query: 28 FARLVYSKYFESCTSLKENVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84
F RL+ +Y ++ TS+ ++ + ++ ++DLPG + LR +F D++KSSA+ +V
Sbjct: 79 FVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRLQFLDRFKSSARAVV 138
Query: 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144
+V+DS+T Q+ ++DVAE LY +L D + LV CNKQD +AKS+ +++ L+KE
Sbjct: 139 FVVDSATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKE 198
Query: 145 LNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTT---GLDSASEYDV 201
LN +R T+S + + LG K+FEFS L +V F + + G A DV
Sbjct: 199 LNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDAGSADV 258
Query: 202 EQLQDWMVTL 211
+ L+ W+ +
Sbjct: 259 QDLEKWLAKI 268
|
|
| UNIPROTKB|F1MLG1 LOC100138613 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 63/190 (33%), Positives = 110/190 (57%)
Query: 28 FARLVYSKYFESCTSLKENVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84
F RL+ Y ++ TS+ ++ + N+ ++DLPG + LR +F +++K+SA+ IV
Sbjct: 81 FVRLLTGLYRDTQTSITDSSAAYKVNNNRGTNLTLIDLPGHESLRLQFLERFKASARAIV 140
Query: 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144
+V+DS+ Q+ ++DVAE LY +L D + + L+ CNKQD T+AKS+ +++ L+KE
Sbjct: 141 FVVDSAAFQREVKDVAEFLYQVLLDSIGLKNTPSFLIACNKQDITMAKSAKLIQQQLEKE 200
Query: 145 LNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTT---GLDSASEYDV 201
+N +R T+S + + LG K+FEFS L +V F + + G A D+
Sbjct: 201 INTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDAGSADI 260
Query: 202 EQLQDWMVTL 211
+ L+ W+ +
Sbjct: 261 QDLEKWLAKI 270
|
|
| UNIPROTKB|F1NL17 Gga.31975 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 4.5e-26, P = 4.5e-26
Identities = 70/192 (36%), Positives = 116/192 (60%)
Query: 28 FARLVYSKYFESCTSLKEN--VGNFTYEK-KNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84
FARL+ +Y ++ TS+ ++ V + +K N+ ++DLPG + LR +F +++K++A+ IV
Sbjct: 772 FARLLTGRYRDTQTSITDSSAVYRVSNDKGTNVTLIDLPGHESLRLQFLERFKAAARAIV 831
Query: 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144
+V+DS Q+ ++DVAE LY +L D V + +L+ CNKQD T+AKS+ +++ L+KE
Sbjct: 832 FVVDSVAFQREVKDVAEFLYQVLVDSTVLKNAPALLIACNKQDVTMAKSAKLIQQQLEKE 891
Query: 145 LNLVRRTKSNQLEDTNDVAAN--QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEY--- 199
LN +R T+S + D +A LG KDF+FS L +V F + + S E
Sbjct: 892 LNTLRVTRS-AAPTSLDASATGGPAQLGKKGKDFDFSQLPMKVEFVECSARGSKGEEGDA 950
Query: 200 DVEQLQDWMVTL 211
D E L+ W+ +
Sbjct: 951 DFEDLEKWLAKI 962
|
|
| UNIPROTKB|F1LMP2 Tf "Serotransferrin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 4.7e-26, P = 4.7e-26
Identities = 66/190 (34%), Positives = 110/190 (57%)
Query: 28 FARLVYSKYFESCTSLKENVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84
F RL+ +Y ++ TS+ ++ + ++ ++DLPG + LR +F D++KSSA+ +V
Sbjct: 789 FVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRLQFLDRFKSSARAVV 848
Query: 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144
+V+DS+T Q+ ++DVAE LY +L D + LV CNKQD +AKS+ +++ L+KE
Sbjct: 849 FVVDSATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKE 908
Query: 145 LNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTT---GLDSASEYDV 201
LN +R T+S + + LG K+FEFS L +V F + + G A DV
Sbjct: 909 LNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDAGSADV 968
Query: 202 EQLQDWMVTL 211
+ L+ W+ +
Sbjct: 969 QDLEKWLAKI 978
|
|
| MGI|MGI:102964 Srprb "signal recognition particle receptor, B subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 61/190 (32%), Positives = 109/190 (57%)
Query: 28 FARLVYSKYFESCTSLKENVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84
F RL+ +Y ++ TS+ ++ + ++ ++DLPG + LR + D++KSSA+ +V
Sbjct: 79 FVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 138
Query: 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144
+V+DS+ Q+ ++DVAE LY +L D + ++L+ CNKQD +AKS+ +++ L+KE
Sbjct: 139 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKE 198
Query: 145 LNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTT---GLDSASEYDV 201
LN +R T+S + + LG K+FEFS L +V F + + G D+
Sbjct: 199 LNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADI 258
Query: 202 EQLQDWMVTL 211
+ L+ W+ +
Sbjct: 259 QDLEKWLAKI 268
|
|
| UNIPROTKB|Q9Y5M8 SRPRB "Signal recognition particle receptor subunit beta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 62/190 (32%), Positives = 108/190 (56%)
Query: 28 FARLVYSKYFESCTSLKENVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84
F RL+ Y ++ TS+ ++ + ++ ++DLPG + LR +F +++KSSA+ IV
Sbjct: 81 FVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSARAIV 140
Query: 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144
+V+DS+ Q+ ++DVAE LY +L D + + L+ CNKQD +AKS+ +++ L+KE
Sbjct: 141 FVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKE 200
Query: 145 LNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTT---GLDSASEYDV 201
LN +R T+S + + LG K+FEFS L +V F + + G D+
Sbjct: 201 LNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSADI 260
Query: 202 EQLQDWMVTL 211
+ L+ W+ +
Sbjct: 261 QDLEKWLAKI 270
|
|
| UNIPROTKB|E2QSM8 TF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 62/191 (32%), Positives = 109/191 (57%)
Query: 28 FARLVYSKYFESCTSLKENVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84
F RL+ Y ++ TS+ ++ + ++ ++DLPG + LR +F +++K+SA+ IV
Sbjct: 804 FVRLLTGLYRDTQTSITDSSAMYRVNNTRATSLTLIDLPGHESLRLQFLERFKASARAIV 863
Query: 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ-DQTLAKSSSVVKTLLQK 143
+V+DS+ Q+ ++DVAE LY +L D + + L+ CNKQ D T+AKS+ +++ L+K
Sbjct: 864 FVVDSAAFQREVKDVAEFLYQVLIDSMSLKNTPSFLIACNKQADITMAKSAKLIQQQLEK 923
Query: 144 ELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTT---GLDSASEYD 200
ELN +R T+S + + LG K+FEFS L +V F + + G D
Sbjct: 924 ELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSAD 983
Query: 201 VEQLQDWMVTL 211
++ L+ W+ +
Sbjct: 984 IQDLEKWLAKI 994
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O13950 | SRPB_SCHPO | No assigned EC number | 0.3333 | 0.6966 | 0.6475 | yes | N/A |
| P36057 | SRPB_YEAST | No assigned EC number | 0.2877 | 0.9336 | 0.8073 | yes | N/A |
| P47758 | SRPRB_MOUSE | No assigned EC number | 0.3623 | 0.9905 | 0.7769 | yes | N/A |
| Q4FZX7 | SRPRB_RAT | No assigned EC number | 0.3853 | 0.9905 | 0.7769 | yes | N/A |
| Q54XX1 | SRPRB_DICDI | No assigned EC number | 0.3034 | 0.8767 | 0.6379 | yes | N/A |
| Q8SQH8 | ARF_ENCCU | No assigned EC number | 0.2485 | 0.8151 | 0.8309 | yes | N/A |
| Q9Y5M8 | SRPRB_HUMAN | No assigned EC number | 0.3581 | 0.9905 | 0.7712 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 211 | |||
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 1e-55 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 4e-41 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 4e-10 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 2e-09 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 8e-09 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 4e-08 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 5e-08 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 1e-07 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 2e-07 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 3e-07 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 4e-07 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 8e-07 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 2e-06 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 2e-06 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 2e-06 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 3e-06 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 1e-05 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-05 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 4e-05 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 4e-05 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 5e-05 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 1e-04 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 3e-04 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 4e-04 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 0.002 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 0.002 | |
| pfam02421 | 190 | pfam02421, FeoB_N, Ferrous iron transport protein | 0.003 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 1e-55
Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 6/204 (2%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFT---YEKKNIKIVDLPGEDRL 68
VLL G S SGKT LF +L K + TS++ NV +F + K + +VD+PG ++L
Sbjct: 1 PTVLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKL 60
Query: 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128
R+K + K+S K IV+V+DS+T QK +RDVAE LY IL D + +++ IL+ CNKQD
Sbjct: 61 RDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDL 120
Query: 129 TLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLG-NPDKDFEFSDLYNQVSF 187
AK + +K LL+KE+N +R ++S LE + ++ LG KDFEF L +V F
Sbjct: 121 FTAKPAKKIKELLEKEINTLRESRSKSLESLDGDDGSKDTLGDKGGKDFEFDQLEGEVDF 180
Query: 188 CDTTGLDSASEYDVEQLQDWMVTL 211
+ + S+ ++ +++W+ L
Sbjct: 181 VEGSVKK--SKGGIDDIEEWIDEL 202
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 4e-41
Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 10/184 (5%)
Query: 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIK-----IVDLP 63
SSQ V+++GL SGKT LF L ++ TS E + Y+ K ++D P
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQ-EP--SAAYKYMLHKGFSFTLIDFP 57
Query: 64 GEDRLRNKFFDQ--YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
G +LR K + SS +GIV+V+DS+ K + D AE LY IL+ ++ + ++IL+
Sbjct: 58 GHVKLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILI 117
Query: 122 CCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDL 181
CNKQ+ A+ +K L+KE+N +R +S L + LG KDF+F L
Sbjct: 118 ACNKQESFTARPPKKIKQALEKEINTIRERRSKALSGLDGSDDLSAVLGKKGKDFKFDQL 177
Query: 182 YNQV 185
V
Sbjct: 178 EGNV 181
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-10
Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 12/145 (8%)
Query: 14 VLLSGLSLSGKTLLFARL--VYSKYFES------CTSLKENVGNFTYEKKNIKIVDLPGE 65
VL+ GL +GKT + +SK ++ ++ N+G K + DL G+
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61
Query: 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125
+ LR+ +D+Y + + G++YV+DS T ++ + + ++ + ++ V +LV NK
Sbjct: 62 EELRS-LWDKYYAESHGVIYVIDS-TDRERFNESKSAFEKVINNEALEG--VPLLVLANK 117
Query: 126 QDQTLAKSSSVVKTLLQKELNLVRR 150
QD A S + +K + + L+ R
Sbjct: 118 QDLPDALSVAEIKEVFDDCIALIGR 142
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-09
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV--DLPGEDRLRNK 71
+L+ GL +GKT + +L + + ++ NV TY KN+K D+ G++ LR
Sbjct: 17 ILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTY--KNVKFTVWDVGGQESLR-P 73
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131
+ Y + +++V+DS+ + + + E L+ +L + ++ +L+ NKQD A
Sbjct: 74 LWRNYFPNTDAVIFVVDSADRDR-IEEAKEELHALLNEEELA--DAPLLILANKQDLPGA 130
Query: 132 KSSSVVKTLL 141
S + ++ LL
Sbjct: 131 MSEAEIRELL 140
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 8e-09
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG----NFTYEKKNIKIVDLPGEDRLR 69
+L+ GL +GKT + +L + +G Y+ + D+ G+D++R
Sbjct: 2 ILMLGLDGAGKTTILYKLK----LGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIR 57
Query: 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129
+ Y + G+++V+DSS ++ + + L+ +L + ++ +L+ NKQD
Sbjct: 58 P-LWKHYYENTDGLIFVVDSSDRER-IEEAKNELHKLLNEEEL--KGAPLLILANKQDLP 113
Query: 130 LAKSSSVVKTLLQ 142
A + S + LL
Sbjct: 114 GALTESELIELLG 126
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-08
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFES--CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
+L+ GL SGKT + +L S ++ NV +F + D+ G+ + R
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRG- 60
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVA--ESLYVILADPQVQSSRVNILVCCNKQDQT 129
++ Y + +GI++V+DSS LR V + L ++L P ++ R+ IL NK D
Sbjct: 61 LWEHYYKNIQGIIFVIDSS---DRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLP 117
Query: 130 LAKSSSVVKTLLQKEL 145
A ++ + LL E
Sbjct: 118 DALTAVKITQLLCLEN 133
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-08
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGEDRLRNKF 72
VLL GL +GK+ L +L +++ + ++ NV EK ++ + D+ G++++R
Sbjct: 2 VLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMR-TV 60
Query: 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127
+ Y + G+VYV+DSS + L + + L IL + ++ V +++ NKQD
Sbjct: 61 WKCYLENTDGLVYVVDSSD-EARLDESQKELKHILKNEHIKG--VPVVLLANKQD 112
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-07
Identities = 33/127 (25%), Positives = 68/127 (53%), Gaps = 8/127 (6%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIK--IV 60
K + + +L+ GL +GKT + +L + + ++ NV TY KN+K +
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY--KNVKFNVW 58
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+ G+D++R + Y + +G+++V+DS+ + + + + L+ I+ D +++ +L
Sbjct: 59 DVGGQDKIR-PLWRHYYTGTQGLIFVVDSADRDR-IDEARQELHRIINDREMRD--ALLL 114
Query: 121 VCCNKQD 127
V NKQD
Sbjct: 115 VFANKQD 121
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 18 GLSLSGKTLL---FARLVYSKYFES--CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKF 72
GL +GKT L + K + T K + + + I DL G R +
Sbjct: 6 GLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKY-----EVCIFDLGGGANFRGIW 60
Query: 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132
+ Y + A G+V+V+DSS + +++V E L +L P+V ILV NKQD+ A
Sbjct: 61 VNYY-AEAHGLVFVVDSSDDDR-VQEVKEILRELLQHPRVSGK--PILVLANKQDKKNAL 116
Query: 133 S-SSVVKTLLQKELNLVRRTKS 153
+ V++ L ++ LV KS
Sbjct: 117 LGADVIEYLSLEK--LVNENKS 136
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-07
Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 5/160 (3%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
K K+V L GL +GKT L L + + +L T
Sbjct: 10 LSSLGLYKKEAKIVFL-GLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKFTTF 68
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
DL G ++ R + + Y GIV+++D++ ++ ++ E L +L D + + V IL
Sbjct: 69 DLGGHEQAR-RVWKDYFPEVDGIVFLVDAADPER-FQESKEELDSLLNDE--ELANVPIL 124
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160
+ NK D+ A S ++ L + +
Sbjct: 125 ILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNI 164
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV--DLPGEDRLR 69
KV+++ GL +GKT + + + + + ++ NV Y KNI+ + D+ G++ LR
Sbjct: 17 KVIIV-GLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVY--KNIRFLMWDIGGQESLR 73
Query: 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127
+ ++ Y ++ ++ V+DS+ ++ L E LY +LA ++ + +LV NKQD
Sbjct: 74 SS-WNTYYTNTDAVILVIDSTDRER-LPLTKEELYKMLAHEDLRKAV--LLVLANKQD 127
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 2 LFFKFRKSSQKV--VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKI 59
+ K + SS++ +LL GL +GKT + +L + N+ N + + +
Sbjct: 4 ILRKLKPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNV 63
Query: 60 VDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119
D+ G+ ++R ++ Y + ++YV+DS+ +K + + L +L + ++ + V +
Sbjct: 64 WDIGGQRKIR-PYWRNYFENTDVLIYVIDSAD-RKRFEEAGQELVELLEEEKL--AGVPV 119
Query: 120 LVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149
LV NKQD A + V L L+ +R
Sbjct: 120 LVFANKQDLLTAAPAEEVAEAL--NLHDIR 147
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 33/126 (26%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
LF K + + +L+ GL +GKT + +L + + ++ NV TY+ + + D
Sbjct: 4 LFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWD 63
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+D++R + Y ++ +G+++V+DS+ + + + E L+ +L + +++ + ILV
Sbjct: 64 VGGQDKIR-PLWRHYYTNTQGLIFVVDSNDRDR-IDEAREELHRMLNEDELRDAV--ILV 119
Query: 122 CCNKQD 127
NKQD
Sbjct: 120 FANKQD 125
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + RL + + ++ NV TY+ ++ DL G+ +R ++
Sbjct: 2 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR-PYW 60
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y S+ I+YV+DS+ + L L+ +L + +++ + +LV NKQD A S
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDR-LGISKSELHAMLEEEELKDAV--LLVFANKQDMPGALS 117
Query: 134 SSVV 137
+ V
Sbjct: 118 EAEV 121
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-06
Identities = 35/126 (27%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV--DLPGEDRLRNK 71
+L+ GL +GKT + +L + + ++ NV T E KNI D+ G+D++R
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYKNISFTVWDVGGQDKIR-P 59
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131
+ Y + +G+++V+DS+ ++ + + E L +L + +++ + +LV NKQD A
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRER-IGEAREELQRMLNEDELRDAV--LLVFANKQDLPNA 116
Query: 132 KSSSVV 137
S++ V
Sbjct: 117 MSAAEV 122
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 16 LSGLSLSGKTLLFARLVYSKYFE-SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFD 74
L GL SGKT L + ++ E + ++ N+ T IK+ DL G+ R R ++
Sbjct: 4 LVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFR-SMWE 62
Query: 75 QYKSSAKGIVYVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQD 127
+Y IVYV+D++ +K +VA L+ +L P ++ + +LV NK D
Sbjct: 63 RYCRGVNAIVYVVDAADREKL--EVAKNELHDLLEKPSLEG--IPLLVLGNKND 112
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-05
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKEN-VGNFTYE--KKNIK--IVDLPGED 66
K+V+L G GKT L RLV ++ E N T E ++NIK + D G++
Sbjct: 7 KIVVL-GDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
R+ +Y A GI+ V DS+ + + ++ E L + + V IL+ NK
Sbjct: 66 EYRS-LRPEYYRGANGILIVYDSTLRESSD-ELTEEWLEELRE--LAPDDVPILLVGNKI 121
Query: 127 DQTLAKSSSVV 137
D +SSS
Sbjct: 122 DLFDEQSSSEE 132
|
Length = 219 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 18 GLSLSGKTLLFARLVYSKYFES----CTSLKENVGNFTYEKKNIK--IVDLPG----EDR 67
G GK+ L L+ + E T+ +V +K +K +VD PG
Sbjct: 4 GRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGGL 63
Query: 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127
R + A I+ V+D ST +++ D + L + I++ NK D
Sbjct: 64 GREELARLLLRGADLILLVVD-STDRESEEDAKLLILRRLRKEG-----IPIILVGNKID 117
Query: 128 QTLAKSSSVVKTLLQKELNL 147
+ + L + L
Sbjct: 118 LLEEREVEELLRLEELAKIL 137
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 52 YEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQ 111
E + + PG++R + + + A G + ++DSS + + AE + L
Sbjct: 65 DEDTGVHLFGTPGQERFKFMW-EILSRGAVGAIVLVDSS---RPITFHAEEIIDFLT--- 117
Query: 112 VQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145
+ + ++V NKQD A ++ L+ EL
Sbjct: 118 -SRNPIPVVVAINKQDLFDALPPEKIREALKLEL 150
|
Length = 187 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 13 VVLLSGLSLSGKTLLFARLVYSKYFES-------CTSLKENVGNFTYEKKNI--KIVDLP 63
+V+L GL +GKT + RL ++++ + +K ++GN K + D+
Sbjct: 6 IVML-GLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGN----AKGVTFHFWDVG 60
Query: 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCC 123
G+++LR + Y GIV+V+DS V++ + + L+ I + Q V +LV
Sbjct: 61 GQEKLR-PLWKSYTRCTDGIVFVVDSVDVER-MEEAKTELHKITKFSENQG--VPVLVLA 116
Query: 124 NKQDQTLAKSSSVVKTLL 141
NKQD A S V+ LL
Sbjct: 117 NKQDLPNALPVSEVEKLL 134
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-05
Identities = 28/122 (22%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + +L + + ++ NV Y+ + + D+ G+D++R +
Sbjct: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLW 78
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y + +G+++V+DS+ + + + + L+ +L + +++ + +LV NKQD A +
Sbjct: 79 RHYFQNTQGLIFVVDSNDRDRVV-EARDELHRMLNEDELRDA--VLLVFANKQDLPNAMN 135
Query: 134 SS 135
++
Sbjct: 136 AA 137
|
Length = 181 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 1e-04
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 52/132 (39%)
Query: 22 SGKTLLFARLVYSKYFESCTSLKENVGNF---TYEKK---------NIKIVDLPG----- 64
GKT LF L T ++ VGN+ T EKK I+IVDLPG
Sbjct: 8 VGKTTLFNAL---------TGARQKVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGTYSLT 58
Query: 65 ---------EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSS 115
D L + D IV V+D++ +++ +LY+ L Q+
Sbjct: 59 PYSEDEKVARDFLLGEEPD-------LIVNVVDATNLER-------NLYLTL---QLLEL 101
Query: 116 RVNILVCCNKQD 127
+ ++V N D
Sbjct: 102 GLPVVVALNMID 113
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 7 RKSSQKV----VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDL 62
RK+ QK +L+ GL +GKT + + +L N+ Y + I D+
Sbjct: 6 RKTKQKEREMRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEYNGYKLNIWDV 65
Query: 63 PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122
G+ LR+ ++ Y S +++V+DSS + L D L +L + ++ + +L+
Sbjct: 66 GGQKSLRS-YWRNYFESTDALIWVVDSSDRAR-LEDCKRELQKLLVEERLAGA--TLLIF 121
Query: 123 CNKQDQTLAKSSSVVKTLL 141
NKQD A S ++ +L
Sbjct: 122 ANKQDLPGALSPEEIREVL 140
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 4e-04
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
+VV L GL +GKT + +L ++ + ++ NV Y+ I D+ G+ +LR
Sbjct: 1 RVVTL-GLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLR-P 58
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131
+ Y + + +V+V+DSS + + + L +L + +++ + +L+ NKQD A
Sbjct: 59 LWKHYYLNTQAVVFVIDSSHRDR-VSEAHSELAKLLTEKELRDAL--LLIFANKQDVAGA 115
Query: 132 KSSSVVKTLL 141
S + LL
Sbjct: 116 LSVEEMTELL 125
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 49/179 (27%)
Query: 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNF---TYEKK---------N 56
+ V L G GKT LF L T + VGN+ T EKK
Sbjct: 1 MKKLTVALVGNPNVGKTTLFNAL---------TGANQKVGNWPGVTVEKKEGKLKYKGHE 51
Query: 57 IKIVDLPG---------EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVIL 107
I+IVDLPG ++++ F + K IV V+D++ +++ +LY+ L
Sbjct: 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGK--PDLIVNVVDATNLER-------NLYLTL 102
Query: 108 ADPQVQSSRVNILVCCNKQDQTLAKSSSV---VKTLLQKELNL-VRRTKSNQLEDTNDV 162
Q+ + +++ N D AK + ++ L K L + V T + + E ++
Sbjct: 103 ---QLLELGIPMILALNMID--EAKKRGIRIDIE-KLSKLLGVPVVPTVAKRGEGLEEL 155
|
Length = 653 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 10/138 (7%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFE----SCTSLKENVGNFTYEKKNIK--IVDLPGE 65
K+V++ G GK+ L RL+ +K T+ + K K ++D G+
Sbjct: 3 KIVIV-GDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61
Query: 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125
+ Y + + + V D + + ++ E + S V I++ NK
Sbjct: 62 EDYD-AIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIH--HAESGVPIILVGNK 118
Query: 126 QDQTLAKSSSVVKTLLQK 143
D AK + V L K
Sbjct: 119 IDLRDAKLKTHVAFLFAK 136
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.003
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 21/55 (38%)
Query: 22 SGKTLLFARLVYSKYFESCTSLKENVGNF---TYEKK---------NIKIVDLPG 64
GKT LF L T +++VGN+ T EKK I+IVDLPG
Sbjct: 11 VGKTTLFNAL---------TGARQHVGNWPGVTVEKKEGTFKYKGYEIEIVDLPG 56
|
Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 211 | |||
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| KOG0073|consensus | 185 | 100.0 | ||
| KOG0070|consensus | 181 | 100.0 | ||
| KOG0071|consensus | 180 | 99.98 | ||
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.98 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.98 | |
| KOG0084|consensus | 205 | 99.98 | ||
| KOG0090|consensus | 238 | 99.97 | ||
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.97 | |
| KOG0094|consensus | 221 | 99.97 | ||
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.97 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.97 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.97 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.97 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.97 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.97 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.97 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.97 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.97 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.97 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.97 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.97 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.97 | |
| KOG0092|consensus | 200 | 99.97 | ||
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.97 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.97 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.97 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.97 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.97 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.97 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.97 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.97 | |
| KOG0078|consensus | 207 | 99.97 | ||
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.97 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.97 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.97 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.97 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.97 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.97 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.97 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.97 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.96 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.96 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.96 | |
| KOG0075|consensus | 186 | 99.96 | ||
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.96 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.96 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.96 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.96 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.96 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.96 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.96 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.96 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.96 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.96 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.96 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.96 | |
| KOG0098|consensus | 216 | 99.96 | ||
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.96 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.96 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.96 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.96 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.96 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.96 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.96 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.96 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.96 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.96 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.96 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.96 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.96 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.96 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.96 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.96 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.96 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.96 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.96 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.96 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.95 | |
| KOG0394|consensus | 210 | 99.95 | ||
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.95 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.95 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.95 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.95 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.95 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.95 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.95 | |
| KOG0080|consensus | 209 | 99.95 | ||
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.95 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.95 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.95 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.95 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.95 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.95 | |
| KOG0074|consensus | 185 | 99.95 | ||
| PLN03108 | 210 | Rab family protein; Provisional | 99.95 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.95 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.95 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.95 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.95 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.95 | |
| KOG0086|consensus | 214 | 99.95 | ||
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.95 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.95 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.95 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.94 | |
| KOG0072|consensus | 182 | 99.94 | ||
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.94 | |
| KOG0087|consensus | 222 | 99.94 | ||
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.94 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.94 | |
| KOG0079|consensus | 198 | 99.94 | ||
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.94 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.94 | |
| KOG0093|consensus | 193 | 99.94 | ||
| KOG0095|consensus | 213 | 99.94 | ||
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.94 | |
| KOG0091|consensus | 213 | 99.94 | ||
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.93 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.93 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.93 | |
| KOG0076|consensus | 197 | 99.93 | ||
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.93 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.92 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.92 | |
| KOG0081|consensus | 219 | 99.92 | ||
| KOG0088|consensus | 218 | 99.91 | ||
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.91 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.91 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.91 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.91 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.91 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.91 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.91 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.91 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.91 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.91 | |
| KOG0097|consensus | 215 | 99.9 | ||
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.9 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.9 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.9 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.9 | |
| KOG0395|consensus | 196 | 99.9 | ||
| KOG0077|consensus | 193 | 99.9 | ||
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.9 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.89 | |
| KOG0393|consensus | 198 | 99.89 | ||
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.89 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.89 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.89 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.89 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.88 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.88 | |
| KOG0083|consensus | 192 | 99.88 | ||
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.88 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.88 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.88 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.88 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.88 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.88 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.87 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.87 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.87 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.87 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.87 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.87 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.87 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.86 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.86 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.86 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.86 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.86 | |
| PTZ00099 | 176 | rab6; Provisional | 99.86 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.86 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.86 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.86 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.86 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.85 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.85 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.85 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.85 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.85 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.85 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.85 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.85 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.84 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.83 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.83 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.83 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.83 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.83 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.83 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.83 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.83 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.83 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.82 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.82 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.82 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.82 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.82 | |
| KOG4252|consensus | 246 | 99.82 | ||
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.82 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.82 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.81 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.81 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.81 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.81 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.8 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.8 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.79 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.79 | |
| KOG1489|consensus | 366 | 99.79 | ||
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.78 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.78 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.78 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.78 | |
| KOG1423|consensus | 379 | 99.77 | ||
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.77 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.77 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.77 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.76 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.75 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.75 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.75 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.74 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.74 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.74 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.74 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.74 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.73 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.72 | |
| KOG3883|consensus | 198 | 99.72 | ||
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.72 | |
| KOG1145|consensus | 683 | 99.72 | ||
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.71 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.71 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.71 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.69 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.69 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.69 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.69 | |
| KOG1707|consensus | 625 | 99.69 | ||
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.69 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.69 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.68 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.67 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.67 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.66 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.66 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.65 | |
| KOG0462|consensus | 650 | 99.65 | ||
| KOG0096|consensus | 216 | 99.65 | ||
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.65 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.64 | |
| KOG1673|consensus | 205 | 99.62 | ||
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.62 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.61 | |
| KOG1191|consensus | 531 | 99.6 | ||
| KOG4423|consensus | 229 | 99.6 | ||
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.6 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.6 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.59 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.58 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.56 | |
| KOG1532|consensus | 366 | 99.56 | ||
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.55 | |
| PRK13768 | 253 | GTPase; Provisional | 99.53 | |
| KOG0082|consensus | 354 | 99.53 | ||
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.53 | |
| KOG1490|consensus | 620 | 99.49 | ||
| KOG1144|consensus | 1064 | 99.49 | ||
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.48 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.48 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.47 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.47 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.46 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.46 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.45 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.45 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.43 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.43 | |
| KOG0458|consensus | 603 | 99.41 | ||
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.38 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.37 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.36 | |
| KOG0461|consensus | 522 | 99.35 | ||
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.35 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.35 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.33 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.31 | |
| KOG3886|consensus | 295 | 99.31 | ||
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.29 | |
| KOG1143|consensus | 591 | 99.28 | ||
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.28 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.27 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.27 | |
| KOG0410|consensus | 410 | 99.26 | ||
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.24 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.24 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.22 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.22 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.21 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.19 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.17 | |
| KOG0463|consensus | 641 | 99.14 | ||
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.13 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.12 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.12 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.11 | |
| KOG3905|consensus | 473 | 99.1 | ||
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.09 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.09 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.08 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.07 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.07 | |
| KOG2486|consensus | 320 | 99.06 | ||
| KOG0460|consensus | 449 | 99.04 | ||
| KOG0085|consensus | 359 | 98.97 | ||
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.96 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.95 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.94 | |
| KOG0468|consensus | 971 | 98.88 | ||
| KOG0099|consensus | 379 | 98.88 | ||
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.88 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.83 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.83 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.83 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.83 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.82 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.82 | |
| KOG3887|consensus | 347 | 98.8 | ||
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.76 | |
| KOG1491|consensus | 391 | 98.76 | ||
| KOG1486|consensus | 364 | 98.75 | ||
| KOG1954|consensus | 532 | 98.73 | ||
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.72 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.71 | |
| KOG2655|consensus | 366 | 98.7 | ||
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.69 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.69 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.68 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.67 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.66 | |
| KOG0459|consensus | 501 | 98.65 | ||
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.65 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.64 | |
| KOG0467|consensus | 887 | 98.63 | ||
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.63 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.6 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.59 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.58 | |
| KOG0705|consensus | 749 | 98.58 | ||
| KOG0448|consensus | 749 | 98.57 | ||
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.57 | |
| KOG0466|consensus | 466 | 98.57 | ||
| KOG1707|consensus | 625 | 98.57 | ||
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.56 | |
| KOG1547|consensus | 336 | 98.54 | ||
| KOG0447|consensus | 980 | 98.53 | ||
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.52 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.46 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.44 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.43 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.43 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.42 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.4 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.38 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.35 | |
| KOG0465|consensus | 721 | 98.34 | ||
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.33 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.33 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.31 | |
| KOG0464|consensus | 753 | 98.3 | ||
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.29 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.29 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.28 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.24 | |
| KOG1534|consensus | 273 | 98.24 | ||
| KOG1424|consensus | 562 | 98.2 | ||
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.2 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.19 | |
| KOG1487|consensus | 358 | 98.12 | ||
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.1 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.06 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.06 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.01 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.0 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.0 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.92 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.91 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.9 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.89 | |
| KOG2484|consensus | 435 | 97.86 | ||
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.84 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.83 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.8 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.8 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.79 | |
| KOG0780|consensus | 483 | 97.79 | ||
| KOG2485|consensus | 335 | 97.78 | ||
| KOG3859|consensus | 406 | 97.78 | ||
| KOG1533|consensus | 290 | 97.74 | ||
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.73 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.71 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.71 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.71 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.7 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.68 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.66 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.65 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.63 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.61 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.59 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.55 | |
| KOG2423|consensus | 572 | 97.53 | ||
| PRK13695 | 174 | putative NTPase; Provisional | 97.51 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.5 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.49 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.48 | |
| KOG2743|consensus | 391 | 97.48 | ||
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.48 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.47 | |
| KOG0469|consensus | 842 | 97.45 | ||
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.44 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.44 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.41 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.34 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.33 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.32 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.3 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 97.3 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.3 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.3 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.27 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 97.24 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.23 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.21 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.21 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.2 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.18 | |
| KOG0066|consensus | 807 | 97.17 | ||
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.15 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.15 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 97.13 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.12 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.1 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 97.08 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.05 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.04 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.03 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.03 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.02 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.02 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.01 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.0 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 96.98 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 96.98 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.97 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.97 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 96.95 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 96.94 | |
| PRK06217 | 183 | hypothetical protein; Validated | 96.93 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.92 | |
| KOG4273|consensus | 418 | 96.92 | ||
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 96.91 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.9 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.89 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 96.88 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.87 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 96.87 | |
| PRK03839 | 180 | putative kinase; Provisional | 96.86 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 96.84 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 96.84 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 96.84 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.83 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.82 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 96.81 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 96.81 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 96.81 | |
| KOG3347|consensus | 176 | 96.8 | ||
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 96.79 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 96.78 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 96.77 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 96.77 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 96.77 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 96.76 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.76 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 96.76 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 96.76 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 96.76 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 96.74 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 96.73 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 96.72 |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=203.79 Aligned_cols=195 Identities=37% Similarity=0.577 Sum_probs=162.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEec----CceEEEEECCCchhhhhhhHHHhhhcC-CEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE----KKNIKIVDLPGEDRLRNKFFDQYKSSA-KGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~-d~ii~v 86 (211)
.+|+++|++|||||||+++|..+.+..+++++..+...+... +..+.+||+||+.+++. .+..+++.+ +++|+|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~-~~~~~~~~~~~~vV~V 79 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRD-KLLETLKNSAKGIVFV 79 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHH-HHHHHHhccCCEEEEE
Confidence 368999999999999999999998888887777776665553 45899999999999988 577788888 999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++..+.+..+..++..++........++|+++++||+|+..+.....+.+.++++++.++..+..++.+.+.+....
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~ 159 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSK 159 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99998645588888888887654333334599999999999999999999999999999999999888887766555544
Q ss_pred ccc-CCCCCCeeecCCCCcEEEEEEeeecCC-CccchHHHHHHHhh
Q psy1914 167 TFL-GNPDKDFEFSDLYNQVSFCDTTGLDSA-SEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~Sa~tg~-g~~~i~~l~~~i~~ 210 (211)
.++ +..++.|.|++++.++.|++||++.+. | ++.+.+||.+
T Consensus 160 ~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~---~~~~~~w~~~ 202 (203)
T cd04105 160 ESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGG---IDGWEEWIDE 202 (203)
T ss_pred cccccccCcceeeccCceeEEEEEeEEecCCCC---hHhHHHHHhh
Confidence 454 345678999999999999999999987 6 9999999976
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=202.36 Aligned_cols=163 Identities=29% Similarity=0.465 Sum_probs=141.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.+++.||+++|+.||||||+++++..+......||.+.+...+++++..+.+||++|+..++. +|+.|+++++++|||+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~-~w~~y~~~~~~iIfVv 89 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRP-LWKSYFQNADGIIFVV 89 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGG-GGGGGHTTESEEEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccc-cceeeccccceeEEEE
Confidence 378899999999999999999999998888888999999999999999999999999999999 8999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|+++++. +.++.+++..++.+....+ +|+++++||+|+.++....++.+.+. +.. ..
T Consensus 90 Dssd~~~-l~e~~~~L~~ll~~~~~~~--~piLIl~NK~D~~~~~~~~~i~~~l~--l~~---l~--------------- 146 (175)
T PF00025_consen 90 DSSDPER-LQEAKEELKELLNDPELKD--IPILILANKQDLPDAMSEEEIKEYLG--LEK---LK--------------- 146 (175)
T ss_dssp ETTGGGG-HHHHHHHHHHHHTSGGGTT--SEEEEEEESTTSTTSSTHHHHHHHTT--GGG---TT---------------
T ss_pred eccccee-ecccccchhhhcchhhccc--ceEEEEeccccccCcchhhHHHhhhh--hhh---cc---------------
Confidence 9999665 9999999999998876665 99999999999988777665554432 110 00
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..++.++.|||++|+| +.|.++||.+
T Consensus 147 -------------~~~~~~v~~~sa~~g~G---v~e~l~WL~~ 173 (175)
T PF00025_consen 147 -------------NKRPWSVFSCSAKTGEG---VDEGLEWLIE 173 (175)
T ss_dssp -------------SSSCEEEEEEBTTTTBT---HHHHHHHHHH
T ss_pred -------------cCCceEEEeeeccCCcC---HHHHHHHHHh
Confidence 02458999999999999 9999999975
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=200.01 Aligned_cols=161 Identities=20% Similarity=0.364 Sum_probs=128.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+.+||+++|++|||||||+++|..+.+....||++.....+...+..+.+|||||+++++. ++..+++++|++++|+|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-LWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHH-HHHHHhccCCEEEEEEe
Confidence 56799999999999999999999988877666888887777777667999999999999988 78999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.+...++..++......+ +|+++|+||+|+.+....+++.+.+. +..
T Consensus 86 ~t~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~~~--~~~--------------------- 139 (168)
T cd04149 86 SADRDR-IDEARQELHRIINDREMRD--ALLLVFANKQDLPDAMKPHEIQEKLG--LTR--------------------- 139 (168)
T ss_pred CCchhh-HHHHHHHHHHHhcCHhhcC--CcEEEEEECcCCccCCCHHHHHHHcC--CCc---------------------
Confidence 999654 8888888888876543344 89999999999976544433332221 000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+.+++|||++|+| ++++++||.+
T Consensus 140 -----------~~~~~~~~~~~SAk~g~g---v~~~~~~l~~ 167 (168)
T cd04149 140 -----------IRDRNWYVQPSCATSGDG---LYEGLTWLSS 167 (168)
T ss_pred -----------cCCCcEEEEEeeCCCCCC---hHHHHHHHhc
Confidence 001236789999999999 9999999974
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=200.74 Aligned_cols=161 Identities=21% Similarity=0.401 Sum_probs=130.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++.+||+++|+++||||||++++..+.+....||++.+...+.+++..+.+||+||++.++. +|..+++++|++|+|+
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~-~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVV 92 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHH-HHHHHhccCCEEEEEE
Confidence 356799999999999999999999988887666888888877787777999999999999998 7999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++++ +.++..++..++......+ +|+++|+||+|+.+.....++.+. +..
T Consensus 93 D~s~~~s-~~~~~~~l~~~l~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~----l~l-------------------- 145 (181)
T PLN00223 93 DSNDRDR-VVEARDELHRMLNEDELRD--AVLLVFANKQDLPNAMNAAEITDK----LGL-------------------- 145 (181)
T ss_pred eCCcHHH-HHHHHHHHHHHhcCHhhCC--CCEEEEEECCCCCCCCCHHHHHHH----hCc--------------------
Confidence 9999665 8888888888876544434 999999999999876654333322 210
Q ss_pred ccCCCCCCeeecCC-CCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDL-YNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~-~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+ .+.+.+++|||++|+| ++++++||.+
T Consensus 146 -----------~~~~~~~~~~~~~Sa~~g~g---v~e~~~~l~~ 175 (181)
T PLN00223 146 -----------HSLRQRHWYIQSTCATSGEG---LYEGLDWLSN 175 (181)
T ss_pred -----------cccCCCceEEEeccCCCCCC---HHHHHHHHHH
Confidence 000 2336678999999999 9999999975
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=197.19 Aligned_cols=158 Identities=23% Similarity=0.393 Sum_probs=125.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+||+++|.+|||||||++++..+.+....||++.+...+.++...+.+||+||++++.. ++..+++++|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHH-HHHHHhcCCCEEEEEEeCCC
Confidence 58999999999999999999888887666888888777777777999999999999988 78999999999999999998
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
..+ +....+++..++....... .|+++++||+|+.+.....++...+. ++. .
T Consensus 80 ~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~~~--~~~---~-------------------- 131 (159)
T cd04150 80 RER-IGEAREELQRMLNEDELRD--AVLLVFANKQDLPNAMSAAEVTDKLG--LHS---L-------------------- 131 (159)
T ss_pred HHH-HHHHHHHHHHHHhcHHhcC--CCEEEEEECCCCCCCCCHHHHHHHhC--ccc---c--------------------
Confidence 655 8888888888876543334 89999999999976543322222211 000 0
Q ss_pred CCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+.+++|||++|+| ++++++||.+
T Consensus 132 ---------~~~~~~~~~~Sak~g~g---v~~~~~~l~~ 158 (159)
T cd04150 132 ---------RNRNWYIQATCATSGDG---LYEGLDWLSN 158 (159)
T ss_pred ---------CCCCEEEEEeeCCCCCC---HHHHHHHHhc
Confidence 02336788999999999 9999999974
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=198.36 Aligned_cols=161 Identities=22% Similarity=0.381 Sum_probs=129.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+.+||+++|++|||||||++++..+.+....||++.....+.+++..+.+|||||+..++. ++..+++++|++|+|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~ad~ii~v~D 89 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRP-LWRHYYTNTQGLIFVVD 89 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHH-HHHHHhCCCCEEEEEEE
Confidence 55799999999999999999999887776666888888777777777999999999999998 79999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.+..+++..+++.....+ +|+++|+||+|+.+.....++.+. +.. ..
T Consensus 90 ~t~~~s-~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~----~~~-~~------------------ 143 (175)
T smart00177 90 SNDRDR-IDEAREELHRMLNEDELRD--AVILVFANKQDLPDAMKAAEITEK----LGL-HS------------------ 143 (175)
T ss_pred CCCHHH-HHHHHHHHHHHhhCHhhcC--CcEEEEEeCcCcccCCCHHHHHHH----hCc-cc------------------
Confidence 999665 8888899988876543334 899999999999765543332222 110 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..+.+.++++||++|+| ++++++||.+
T Consensus 144 -----------~~~~~~~~~~~Sa~~g~g---v~e~~~~l~~ 171 (175)
T smart00177 144 -----------IRDRNWYIQPTCATSGDG---LYEGLTWLSN 171 (175)
T ss_pred -----------cCCCcEEEEEeeCCCCCC---HHHHHHHHHH
Confidence 002336788999999999 9999999975
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=187.90 Aligned_cols=163 Identities=23% Similarity=0.383 Sum_probs=141.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+.+++||+++|+.||||||++++|.+.......||.++++.++.+++..+++||.+|+..+++ +|.+||..+|++|+|+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~-~W~nYfestdglIwvv 91 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRS-YWKNYFESTDGLIWVV 91 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHH-HHHHhhhccCeEEEEE
Confidence 456899999999999999999999998888888999999999999999999999999999999 9999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++|+.. +++....+..++.....+. .|+++++||.|+.+.-+.+.+...+. +.. ..+
T Consensus 92 DssD~~r-~~e~~~~L~~lL~eerlaG--~~~Lvlank~dl~~~l~~~~i~~~~~--L~~--l~k--------------- 149 (185)
T KOG0073|consen 92 DSSDRMR-MQECKQELTELLVEERLAG--APLLVLANKQDLPGALSLEEISKALD--LEE--LAK--------------- 149 (185)
T ss_pred ECchHHH-HHHHHHHHHHHHhhhhhcC--CceEEEEecCcCccccCHHHHHHhhC--HHH--hcc---------------
Confidence 9999766 9999999999998877777 99999999999998877766554432 110 001
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++.|||.||++ +.+-++||..
T Consensus 150 --------------s~~~~l~~cs~~tge~---l~~gidWL~~ 175 (185)
T KOG0073|consen 150 --------------SHHWRLVKCSAVTGED---LLEGIDWLCD 175 (185)
T ss_pred --------------ccCceEEEEecccccc---HHHHHHHHHH
Confidence 2338999999999999 9999999863
|
|
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=194.96 Aligned_cols=163 Identities=23% Similarity=0.417 Sum_probs=145.7
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
..+++.+|+++|..++||||++++|-.+++..+.||+|+++..+++++..+.+||.+|++++++ +|.+|+++++++|||
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~-lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRP-LWKHYFQNTQGLIFV 91 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCccccc-chhhhccCCcEEEEE
Confidence 3578899999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++|.++ +.++.+.+..++.+..... .|+++++||.|++++.+..++.+.+.- . .+.
T Consensus 92 vDS~Dr~R-i~eak~eL~~~l~~~~l~~--~~llv~aNKqD~~~als~~ei~~~L~l--~-----------~l~------ 149 (181)
T KOG0070|consen 92 VDSSDRER-IEEAKEELHRMLAEPELRN--APLLVFANKQDLPGALSAAEITNKLGL--H-----------SLR------ 149 (181)
T ss_pred EeCCcHHH-HHHHHHHHHHHHcCcccCC--ceEEEEechhhccccCCHHHHHhHhhh--h-----------ccC------
Confidence 99999776 9999999999999877666 999999999999999988776665541 1 000
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++.+..|+|.+|+| +.|.++||.+
T Consensus 150 ---------------~~~w~iq~~~a~~G~G---L~egl~wl~~ 175 (181)
T KOG0070|consen 150 ---------------SRNWHIQSTCAISGEG---LYEGLDWLSN 175 (181)
T ss_pred ---------------CCCcEEeecccccccc---HHHHHHHHHH
Confidence 2458889999999999 9999999975
|
|
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.7e-32 Score=183.35 Aligned_cols=165 Identities=21% Similarity=0.387 Sum_probs=148.3
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+-...++++|+++|..++||||++..|+.+....+.||+|+++.++++++..+++||.+|+...++ +|++|+.+..++|
T Consensus 11 k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRp-lWrhYy~gtqglI 89 (180)
T KOG0071|consen 11 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-LWRHYYTGTQGLI 89 (180)
T ss_pred HHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhH-HHHhhccCCceEE
Confidence 334567999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
||+|+.+.+. +++++++++++++++.+.. .|+++.+||.|++.++.+.++.+.++ +.. .
T Consensus 90 FV~Dsa~~dr-~eeAr~ELh~ii~~~em~~--~~~LvlANkQDlp~A~~pqei~d~le--Le~---~------------- 148 (180)
T KOG0071|consen 90 FVVDSADRDR-IEEARNELHRIINDREMRD--AIILILANKQDLPDAMKPQEIQDKLE--LER---I------------- 148 (180)
T ss_pred EEEeccchhh-HHHHHHHHHHHhCCHhhhc--ceEEEEecCcccccccCHHHHHHHhc--ccc---c-------------
Confidence 9999998755 9999999999999988877 99999999999999999998888765 110 0
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-.+++.+.+|||.+|+| +.|-+.||..
T Consensus 149 ----------------r~~~W~vqp~~a~~gdg---L~eglswlsn 175 (180)
T KOG0071|consen 149 ----------------RDRNWYVQPSCALSGDG---LKEGLSWLSN 175 (180)
T ss_pred ----------------cCCccEeeccccccchh---HHHHHHHHHh
Confidence 03458889999999999 9999999875
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-31 Score=196.41 Aligned_cols=162 Identities=23% Similarity=0.395 Sum_probs=128.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++++||+++|++|||||||++++..+.+....||++.+...+..++..+.+|||||++.++. ++..+++++|++|+|+
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRP-LWRHYYQNTNGLIFVV 92 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHH-HHHHHhcCCCEEEEEE
Confidence 356799999999999999999999888887766888888777777777999999999999998 7999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||.|+.+.....++...+ .. ...
T Consensus 93 D~t~~~s-~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~l----~~-~~~---------------- 148 (182)
T PTZ00133 93 DSNDRER-IGDAREELERMLSEDELRD--AVLLVFANKQDLPNAMSTTEVTEKL----GL-HSV---------------- 148 (182)
T ss_pred eCCCHHH-HHHHHHHHHHHHhCHhhcC--CCEEEEEeCCCCCCCCCHHHHHHHh----CC-Ccc----------------
Confidence 9998665 8888888888876543334 8999999999997655443332222 10 000
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-...+.++++||++|+| ++++++||.+
T Consensus 149 -------------~~~~~~~~~~Sa~tg~g---v~e~~~~l~~ 175 (182)
T PTZ00133 149 -------------RQRNWYIQGCCATTAQG---LYEGLDWLSA 175 (182)
T ss_pred -------------cCCcEEEEeeeCCCCCC---HHHHHHHHHH
Confidence 01236778999999999 9999999975
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-31 Score=193.84 Aligned_cols=162 Identities=23% Similarity=0.378 Sum_probs=127.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+...+||+++|++|||||||++++.+..+....||++.....+.+++..+.+|||||++.++. ++..+++++|++++|+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRP-YWRNYFESTDALIWVV 89 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHH-HHHHHhCCCCEEEEEE
Confidence 356789999999999999999999988666556888877777888877999999999999888 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++...... ++|+++|+||+|+.+.....++.+.+.. . . .
T Consensus 90 d~~~~~s-~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~--~-~---------------- 145 (173)
T cd04154 90 DSSDRLR-LDDCKRELKELLQEERLA--GATLLILANKQDLPGALSEEEIREALEL--D--K-I---------------- 145 (173)
T ss_pred ECCCHHH-HHHHHHHHHHHHhChhhc--CCCEEEEEECcccccCCCHHHHHHHhCc--c--c-c----------------
Confidence 9999654 777778888776543333 4999999999999765543333222210 0 0 0
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-...+++++|||++|+| ++++++||.+
T Consensus 146 -------------~~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 172 (173)
T cd04154 146 -------------SSHHWRIQPCSAVTGEG---LLQGIDWLVD 172 (173)
T ss_pred -------------CCCceEEEeccCCCCcC---HHHHHHHHhc
Confidence 01337899999999999 9999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=191.30 Aligned_cols=155 Identities=25% Similarity=0.331 Sum_probs=127.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||+|+.|+..+.|++.+ .|+|.. ...++++++ .+++|||+||++|+. +..+||+++++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt-it~syYR~ahGi 85 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGI 85 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh-hhHhhccCCCeE
Confidence 44579999999999999999999999998888 566654 455778887 899999999999999 899999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHH-HHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKT-LLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|||+++.+ +|..+..|+.++.+... .++|.++|+||+|+.+.+..+.... .+..+++
T Consensus 86 i~vyDiT~~~-SF~~v~~Wi~Ei~~~~~---~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~---------------- 145 (205)
T KOG0084|consen 86 IFVYDITKQE-SFNNVKRWIQEIDRYAS---ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG---------------- 145 (205)
T ss_pred EEEEEcccHH-HhhhHHHHHHHhhhhcc---CCCCeEEEeeccccHhheecCHHHHHHHHHhcC----------------
Confidence 9999999954 59999999999876532 4489999999999998876543332 3332222
Q ss_pred cccccccCCCCCCeeecCCCCcEE-EEEEeeecCCCccchHHHHHHHh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVS-FCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
++ ++++|||++.+ +++.|.-|.
T Consensus 146 ----------------------~~~f~ETSAK~~~N---Ve~~F~~la 168 (205)
T KOG0084|consen 146 ----------------------IPIFLETSAKDSTN---VEDAFLTLA 168 (205)
T ss_pred ----------------------CcceeecccCCccC---HHHHHHHHH
Confidence 44 89999999999 999887664
|
|
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=192.72 Aligned_cols=201 Identities=38% Similarity=0.605 Sum_probs=176.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhh--cCCEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKS--SAKGIV 84 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--~~d~ii 84 (211)
++.....|+++|+.+||||+|+.+|..+....+++++.++.+.+.+++....++|.|||.+.+.++.+.+.. .+-+++
T Consensus 34 rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 34 RRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred hhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 344557899999999999999999999999999999999999999999999999999999999965444332 699999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
||+|+.........+.++++.++.+.......+|+++++||.|+..+...+.+++++++++..++..+.++......+..
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 99999876666888999999998776444556999999999999999999999999999999999998865555566677
Q ss_pred cccccCCCCCCeeecCCC-CcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 165 NQTFLGNPDKDFEFSDLY-NQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
....++..+.+|.|++++ .++.|.++|+++| + ++++.+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~---i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-E---IDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-C---hHHHHHHHHHh
Confidence 888899999999999998 9999999999999 4 99999999863
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=191.62 Aligned_cols=158 Identities=22% Similarity=0.350 Sum_probs=125.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
||+++|++|||||||++++.+..+....||++.+...+++++..+.+|||||+..+.. .+..+++++|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~-~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP-LWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcch-HHHHHhccCCEEEEEEeCCcH
Confidence 6899999999999999999998777666888888877888777999999999999888 688899999999999999996
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+ +.+...|+..++......+ .|+++|+||+|+.+....++..+.+. +...
T Consensus 80 ~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~------------------------ 130 (169)
T cd04158 80 DR-VSEAHSELAKLLTEKELRD--ALLLIFANKQDVAGALSVEEMTELLS--LHKL------------------------ 130 (169)
T ss_pred HH-HHHHHHHHHHHhcChhhCC--CCEEEEEeCcCcccCCCHHHHHHHhC--Cccc------------------------
Confidence 55 8888899888886543444 89999999999976544443332221 0000
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+.+++|||++|.| ++++++||.+
T Consensus 131 -------~~~~~~~~~~~Sa~~g~g---v~~~f~~l~~ 158 (169)
T cd04158 131 -------CCGRSWYIQGCDARSGMG---LYEGLDWLSR 158 (169)
T ss_pred -------cCCCcEEEEeCcCCCCCC---HHHHHHHHHH
Confidence 001236788999999999 9999999975
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=188.11 Aligned_cols=156 Identities=21% Similarity=0.315 Sum_probs=131.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+||+++|..+||||||++|++.+.|..+| +|+|..... +.+.+. .+++|||+||++|+. +.+.|++++.++|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs-lipsY~Rds~vav 99 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAV 99 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh-hhhhhccCCeEEE
Confidence 4589999999999999999999999998888 788876554 666666 899999999999999 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH-HHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK-TLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|||.++..+ |+.+..|+.+.++.+.-.+ +-+++|+||.||.+.++....+ +...++++
T Consensus 100 iVyDit~~~S-fe~t~kWi~dv~~e~gs~~--viI~LVGnKtDL~dkrqvs~eEg~~kAkel~----------------- 159 (221)
T KOG0094|consen 100 IVYDITDRNS-FENTSKWIEDVRRERGSDD--VIIFLVGNKTDLSDKRQVSIEEGERKAKELN----------------- 159 (221)
T ss_pred EEEeccccch-HHHHHHHHHHHHhccCCCc--eEEEEEcccccccchhhhhHHHHHHHHHHhC-----------------
Confidence 9999999665 9999999999998755333 8899999999999887754333 23333443
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.|.++||++|.| |.+++.-|..
T Consensus 160 ---------------------a~f~etsak~g~N---Vk~lFrrIaa 182 (221)
T KOG0094|consen 160 ---------------------AEFIETSAKAGEN---VKQLFRRIAA 182 (221)
T ss_pred ---------------------cEEEEecccCCCC---HHHHHHHHHH
Confidence 7899999999999 9999987653
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=191.83 Aligned_cols=161 Identities=22% Similarity=0.384 Sum_probs=128.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+..||+++|++|||||||++++..+.+....||.+.+...+.+++..+.+||+||++.+.. .+..+++++|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRS-SWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHH-HHHHHhhcCCEEEEEEE
Confidence 35789999999999999999999998887777888888888888888999999999999988 68888999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++++ +....+++..+++.....+ +|+++++||+|+.+.....++.+.+. +. ..
T Consensus 92 ~s~~~~-~~~~~~~l~~~~~~~~~~~--~p~viv~NK~Dl~~~~~~~~i~~~l~--~~---~~----------------- 146 (174)
T cd04153 92 STDRER-LPLTKEELYKMLAHEDLRK--AVLLVLANKQDLKGAMTPAEISESLG--LT---SI----------------- 146 (174)
T ss_pred CCCHHH-HHHHHHHHHHHHhchhhcC--CCEEEEEECCCCCCCCCHHHHHHHhC--cc---cc-----------------
Confidence 998655 7777888888876544334 89999999999976444333222221 00 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 147 ------------~~~~~~~~~~SA~~g~g---i~e~~~~l~~ 173 (174)
T cd04153 147 ------------RDHTWHIQGCCALTGEG---LPEGLDWIAS 173 (174)
T ss_pred ------------cCCceEEEecccCCCCC---HHHHHHHHhc
Confidence 01236789999999999 9999999974
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=194.14 Aligned_cols=154 Identities=23% Similarity=0.374 Sum_probs=119.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+.|+++|..|||||||++++..+.|...+ +|++.. ...+.+++. .+.+|||+|+++++. ++..|++++|++|+|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~-l~~~y~~~ad~iIlV 79 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-ITSAYYRSAKGIILV 79 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH-HHHHHhcCCCEEEEE
Confidence 46899999999999999999999997766 565544 345777774 789999999999998 799999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
||++++++ ++.+..|+..+.+. . ..++|+++|+||+|+...+.... ....+.+++
T Consensus 80 fDvtd~~S-f~~l~~w~~~i~~~-~--~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~-------------------- 135 (202)
T cd04120 80 YDITKKET-FDDLPKWMKMIDKY-A--SEDAELLLVGNKLDCETDREISRQQGEKFAQQI-------------------- 135 (202)
T ss_pred EECcCHHH-HHHHHHHHHHHHHh-C--CCCCcEEEEEECcccccccccCHHHHHHHHHhc--------------------
Confidence 99999665 88888877654332 2 23499999999999975444321 111121111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+++|||++|+| |+++++||.+
T Consensus 136 -----------------~~~~~~etSAktg~g---V~e~F~~l~~ 160 (202)
T cd04120 136 -----------------TGMRFCEASAKDNFN---VDEIFLKLVD 160 (202)
T ss_pred -----------------CCCEEEEecCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=187.92 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=127.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
+|+++|++|||||||++++.+.......||++.....+.+++..+.+||+||+..++. ++..+++++|++++|+|++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRG-IWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHH-HHHHHHcCCCEEEEEEECCch
Confidence 4899999999999999999977333445888888777888888999999999999998 799999999999999999996
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+ +..+..++..++......+ +|+++|+||+|+.+.+...++.+.+. +..+
T Consensus 80 ~s-~~~~~~~l~~l~~~~~~~~--~piliv~NK~Dl~~~~~~~~i~~~~~--l~~~------------------------ 130 (167)
T cd04161 80 DR-VQEVKEILRELLQHPRVSG--KPILVLANKQDKKNALLGADVIEYLS--LEKL------------------------ 130 (167)
T ss_pred hH-HHHHHHHHHHHHcCccccC--CcEEEEEeCCCCcCCCCHHHHHHhcC--cccc------------------------
Confidence 64 8888889888886544344 89999999999988776555444321 1100
Q ss_pred CCCeeecCCCCcEEEEEEeeecC------CCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDS------ASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg------~g~~~i~~l~~~i~~ 210 (211)
.++...++.+++|||++| .| +.+.++||.+
T Consensus 131 -----~~~~~~~~~~~~~Sa~~g~~~~~~~g---~~~~~~wl~~ 166 (167)
T cd04161 131 -----VNENKSLCHIEPCSAIEGLGKKIDPS---IVEGLRWLLA 166 (167)
T ss_pred -----cCCCCceEEEEEeEceeCCCCccccC---HHHHHHHHhc
Confidence 001123478899999998 89 9999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=190.34 Aligned_cols=168 Identities=20% Similarity=0.296 Sum_probs=130.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.++++|+++|++|||||||++++.++.+....||.++....+.+++..+.+||+||+..++. .+..+++++|++++|+|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARR-LWKDYFPEVNGIVYLVD 93 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHH-HHHHHhCCCCEEEEEEE
Confidence 66799999999999999999999998776556777777777888888999999999999888 78999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..+++.....+ +|+++|+||+|+....+.+++.+.+ +........+.
T Consensus 94 ~~~~~~-~~~~~~~l~~l~~~~~~~~--~piliv~NK~Dl~~~~~~~~i~~~l----~l~~~~~~~~~------------ 154 (184)
T smart00178 94 AYDKER-FAESKRELDALLSDEELAT--VPFLILGNKIDAPYAASEDELRYAL----GLTNTTGSKGK------------ 154 (184)
T ss_pred CCcHHH-HHHHHHHHHHHHcChhhcC--CCEEEEEeCccccCCCCHHHHHHHc----CCCcccccccc------------
Confidence 998655 7788888888776543344 8999999999997665555444333 21000000000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.-.+.+.+++|||++|+| ++++++||.+
T Consensus 155 -----------~~~~~~~i~~~Sa~~~~g---~~~~~~wl~~ 182 (184)
T smart00178 155 -----------VGVRPLEVFMCSVVRRMG---YGEGFKWLSQ 182 (184)
T ss_pred -----------cCCceeEEEEeecccCCC---hHHHHHHHHh
Confidence 002347899999999999 9999999974
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=186.53 Aligned_cols=159 Identities=25% Similarity=0.407 Sum_probs=120.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc-ccc-ccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY-FES-CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~-~~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
+|+++|++|||||||+++|.+..+ ... .||++.....+..++..+.+|||||++.++. ++..+++++|++++|+|++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~D~~ 79 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRG-LWEHYYKNIQGIIFVIDSS 79 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHH-HHHHHHccCCEEEEEEeCC
Confidence 589999999999999999998753 333 4788777666766666899999999999998 7899999999999999999
Q ss_pred CchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccC
Q psy1914 91 TVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLG 170 (211)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (211)
++.+ +.....++..+++...+...++|+++|+||+|+.+.....+....+. +. .
T Consensus 80 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~--~~-----~------------------ 133 (162)
T cd04157 80 DRLR-LVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG--LE-----N------------------ 133 (162)
T ss_pred cHHH-HHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC--Cc-----c------------------
Confidence 8654 67777777777665433334599999999999976543332222111 00 0
Q ss_pred CCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 171 NPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ...++.+++|||++|+| ++++++||.+
T Consensus 134 -------~--~~~~~~~~~~Sa~~g~g---v~~~~~~l~~ 161 (162)
T cd04157 134 -------I--KDKPWHIFASNALTGEG---LDEGVQWLQA 161 (162)
T ss_pred -------c--cCceEEEEEeeCCCCCc---hHHHHHHHhc
Confidence 0 01236789999999999 9999999974
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=185.67 Aligned_cols=159 Identities=22% Similarity=0.361 Sum_probs=123.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc-eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
||+++|++|||||||++++.++.+....||++.....+...+. .+.+||+||+..+.. .+..++.++|++++|+|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRT-VWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHH-HHHHHhccCCEEEEEEECCc
Confidence 5899999999999999999999887777888877766666543 899999999999888 68888999999999999998
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
+.+ +.....++..+++.....+ +|+++|+||+|+.......++... +.. ..
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~i~~~----~~~---------~~------------- 130 (160)
T cd04156 80 EAR-LDESQKELKHILKNEHIKG--VPVVLLANKQDLPGALTAEEITRR----FKL---------KK------------- 130 (160)
T ss_pred HHH-HHHHHHHHHHHHhchhhcC--CCEEEEEECcccccCcCHHHHHHH----cCC---------cc-------------
Confidence 664 7888888888876543334 999999999999754333322211 110 00
Q ss_pred CCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
+ .....+++++|||++|+| +++++++|.++
T Consensus 131 ------~-~~~~~~~~~~~Sa~~~~g---v~~~~~~i~~~ 160 (160)
T cd04156 131 ------Y-CSDRDWYVQPCSAVTGEG---LAEAFRKLASF 160 (160)
T ss_pred ------c-CCCCcEEEEecccccCCC---hHHHHHHHhcC
Confidence 0 001236789999999999 99999999764
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=185.41 Aligned_cols=157 Identities=27% Similarity=0.451 Sum_probs=121.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
||+++|+++||||||++++..+.+....||++.+...+.+.+..+.+|||||+..++. ++..++..++++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRP-YWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHH-HHHHHhcCCCEEEEEEECCCH
Confidence 6899999999999999999888877667888887777777777999999999999988 789999999999999999885
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+ +....+++..+++.....+ +|+++|+||+|+.+.....++...+ .. . .
T Consensus 80 ~~-~~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~i~~~~----~~---~---~----------------- 129 (158)
T cd04151 80 DR-LGTAKEELHAMLEEEELKG--AVLLVFANKQDMPGALSEAEISEKL----GL---S---E----------------- 129 (158)
T ss_pred HH-HHHHHHHHHHHHhchhhcC--CcEEEEEeCCCCCCCCCHHHHHHHh----Cc---c---c-----------------
Confidence 54 6666677776665433333 8999999999997554333222111 10 0 0
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ .....++++|||++|+| ++++++||.+
T Consensus 130 -----~--~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 157 (158)
T cd04151 130 -----L--KDRTWSIFKTSAIKGEG---LDEGMDWLVN 157 (158)
T ss_pred -----c--CCCcEEEEEeeccCCCC---HHHHHHHHhc
Confidence 0 01226789999999999 9999999975
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=188.70 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=121.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|..|||||||+.++..+.+...+ ++.+... ..+.+++. .+.+|||+|++.+.. ++..+++++|++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-l~~~~~~~ad~i 82 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT-IFRSYSRGAQGI 82 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHhcCCCEE
Confidence 34589999999999999999999998886655 4544433 34566664 788999999999998 789999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|||++++.+ ++.+..|+..+.... ++.|+++|+||+||...+... +....+.+.
T Consensus 83 llVfD~t~~~S-f~~~~~w~~~i~~~~----~~~piilVGNK~DL~~~~~v~~~~~~~~a~~------------------ 139 (189)
T cd04121 83 ILVYDITNRWS-FDGIDRWIKEIDEHA----PGVPKILVGNRLHLAFKRQVATEQAQAYAER------------------ 139 (189)
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECccchhccCCCHHHHHHHHHH------------------
Confidence 99999999665 999988888875432 349999999999997654322 112222211
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++|||++|.| ++++++||.+
T Consensus 140 --------------------~~~~~~e~SAk~g~~---V~~~F~~l~~ 164 (189)
T cd04121 140 --------------------NGMTFFEVSPLCNFN---ITESFTELAR 164 (189)
T ss_pred --------------------cCCEEEEecCCCCCC---HHHHHHHHHH
Confidence 126899999999999 9999999975
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=191.16 Aligned_cols=168 Identities=11% Similarity=0.126 Sum_probs=117.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
..+||+++|+++||||||+.++..+.+...+ ||++..+.. +.+++. .+.+|||+|++.++. ++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~-l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR-LRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh-hhhhhccCCCEEEE
Confidence 3589999999999999999999999987665 677655442 456654 789999999999998 79999999999999
Q ss_pred EEeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|||++++.+ ++.+.. |+..+... . .++|+++|+||+||.+.....+.... .. ....+. ++
T Consensus 81 vydit~~~S-f~~~~~~w~~~i~~~--~--~~~piilvgNK~DL~~~~~~~~~~~~----~~---~~~v~~-------~~ 141 (191)
T cd01875 81 CFSIASPSS-YENVRHKWHPEVCHH--C--PNVPILLVGTKKDLRNDADTLKKLKE----QG---QAPITP-------QQ 141 (191)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhh--C--CCCCEEEEEeChhhhcChhhHHHHhh----cc---CCCCCH-------HH
Confidence 999999765 888875 44444332 1 24999999999999754322111100 00 000000 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+. +-.+.+++++|||++|+| +++++++|.+
T Consensus 142 ~~~~a----------~~~~~~~~~e~SAk~g~~---v~e~f~~l~~ 174 (191)
T cd01875 142 GGALA----------KQIHAVKYLECSALNQDG---VKEVFAEAVR 174 (191)
T ss_pred HHHHH----------HHcCCcEEEEeCCCCCCC---HHHHHHHHHH
Confidence 00000 001126889999999999 9999999875
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=185.15 Aligned_cols=155 Identities=17% Similarity=0.258 Sum_probs=119.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|.+|||||||+++++.+.+...+ ||++.... .+.+++. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-MRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh-HHHHHHhhCCEEEEE
Confidence 479999999999999999999988886655 55544333 4566654 678999999999998 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|+++..+ ++....|+..+...... .+.|+++|+||+|+.+...... ....+.+.++
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------- 137 (164)
T cd04175 80 YSITAQST-FNDLQDLREQILRVKDT--EDVPMILVGNKCDLEDERVVGKEQGQNLARQWG------------------- 137 (164)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-------------------
Confidence 99988554 88888888887754322 3499999999999976543221 1122222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|.| ++++++||.+
T Consensus 138 -------------------~~~~~~Sa~~~~~---v~~~~~~l~~ 160 (164)
T cd04175 138 -------------------CAFLETSAKAKIN---VNEIFYDLVR 160 (164)
T ss_pred -------------------CEEEEeeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999874
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=186.50 Aligned_cols=155 Identities=13% Similarity=0.223 Sum_probs=118.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+||+++|.+|||||||++++..+.+...+ ||++..+. .+.+++. .+.+|||||++.++. ++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA-MRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH-HhHHHhhcCCEEEEE
Confidence 479999999999999999999999987554 66665443 3666664 788999999999998 799999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
||++++.+ +..+..|+..+..... ..++|+++|+||+|+.+.+.... ....+.+.
T Consensus 81 ~d~~~~~S-f~~~~~~~~~i~~~~~--~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~--------------------- 136 (172)
T cd04141 81 YSVTDRHS-FQEASEFKKLITRVRL--TEDIPLVLVGNKVDLESQRQVTTEEGRNLARE--------------------- 136 (172)
T ss_pred EECCchhH-HHHHHHHHHHHHHhcC--CCCCCEEEEEEChhhhhcCccCHHHHHHHHHH---------------------
Confidence 99999665 8888776555443211 23499999999999976543321 11112111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++|||++|.| |+++++||.+
T Consensus 137 -----------------~~~~~~e~Sa~~~~~---v~~~f~~l~~ 161 (172)
T cd04141 137 -----------------FNCPFFETSAALRHY---IDDAFHGLVR 161 (172)
T ss_pred -----------------hCCEEEEEecCCCCC---HHHHHHHHHH
Confidence 127899999999999 9999999874
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=183.29 Aligned_cols=155 Identities=17% Similarity=0.260 Sum_probs=117.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||+++++++.+...+ ||++... ..+.+++. .+.+|||||++.++. ++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-MRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH-HHHHHHhcCCEEEEE
Confidence 368999999999999999999998886655 4544332 33556654 578899999999998 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++..+ +.....|+..+.+.... .++|+++|+||+|+.+..........+.+..
T Consensus 80 ~~~~~~~s-~~~~~~~~~~i~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--------------------- 135 (162)
T cd04138 80 FAINSRKS-FEDIHTYREQIKRVKDS--DDVPMVLVGNKCDLAARTVSSRQGQDLAKSY--------------------- 135 (162)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccceecHHHHHHHHHHh---------------------
Confidence 99998554 77777777777654322 2489999999999975332222121221111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| +++++++|.+
T Consensus 136 -----------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 159 (162)
T cd04138 136 -----------------GIPYIETSAKTRQG---VEEAFYTLVR 159 (162)
T ss_pred -----------------CCeEEEecCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999875
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=184.39 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=118.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++..+.+...+ ||++.. ...+.+++. .+.+|||||++.+.. ++..++++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA-MRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch-HHHHHhhcCCEEEEE
Confidence 379999999999999999999998887665 454422 334666665 678899999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ ++....|+..+...... .++|+++|+||+|+.+.+.... ....+.+.
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------------------- 135 (163)
T cd04136 80 YSITSQSS-FNDLQDLREQILRVKDT--ENVPMVLVGNKCDLEDERVVSREEGQALARQ--------------------- 135 (163)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccceecHHHHHHHHHH---------------------
Confidence 99998655 88888887777654322 3489999999999975433221 11111111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| ++++++||.+
T Consensus 136 -----------------~~~~~~~~Sa~~~~~---v~~l~~~l~~ 160 (163)
T cd04136 136 -----------------WGCPFYETSAKSKIN---VDEVFADLVR 160 (163)
T ss_pred -----------------cCCeEEEecCCCCCC---HHHHHHHHHH
Confidence 116789999999999 9999999975
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=184.03 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=127.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|..++|||||+-|+..+.|.+. .||+|...- .+.+++. ++.+|||+|+++|+. +-+.||+++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s-lapMYyRgA~A 80 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS-LAPMYYRGANA 80 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc-cccceecCCcE
Confidence 34678999999999999999999999999875 588886544 4666665 788999999999999 89999999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|+|||+++.++ |..+..|+.++-.... +++-+.+||||+||.+.+.+.. ..+.+.+.
T Consensus 81 AivvYDit~~~S-F~~aK~WvkeL~~~~~---~~~vialvGNK~DL~~~R~V~~~ea~~yAe~----------------- 139 (200)
T KOG0092|consen 81 AIVVYDITDEES-FEKAKNWVKELQRQAS---PNIVIALVGNKADLLERREVEFEEAQAYAES----------------- 139 (200)
T ss_pred EEEEEecccHHH-HHHHHHHHHHHHhhCC---CCeEEEEecchhhhhhcccccHHHHHHHHHh-----------------
Confidence 999999999555 9999999999876533 5588899999999998555432 12222221
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....|+++|||||.| +++++.-|.+
T Consensus 140 ---------------------~gll~~ETSAKTg~N---v~~if~~Ia~ 164 (200)
T KOG0092|consen 140 ---------------------QGLLFFETSAKTGEN---VNEIFQAIAE 164 (200)
T ss_pred ---------------------cCCEEEEEecccccC---HHHHHHHHHH
Confidence 126889999999999 9999987754
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=186.79 Aligned_cols=172 Identities=20% Similarity=0.318 Sum_probs=129.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+..||+++|++|||||||++++.++.+....||.++....+.+++..+.+||+||+..+.. .+..++++++++++|+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~-~~~~~~~~ad~iilV~D 95 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARR-LWKDYFPEVDGIVFLVD 95 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHH-HHHHHhccCCEEEEEEE
Confidence 56799999999999999999999988876666788888888888888999999999999887 68889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+++..+ +.....++..+++.....+ .|+++++||+|+.......+..+.+ +...... +. ..
T Consensus 96 ~~~~~s-~~~~~~~~~~i~~~~~~~~--~pvivv~NK~Dl~~~~~~~~~~~~~----~~~~~~~-~~--~~--------- 156 (190)
T cd00879 96 AADPER-FQESKEELDSLLSDEELAN--VPFLILGNKIDLPGAVSEEELRQAL----GLYGTTT-GK--GV--------- 156 (190)
T ss_pred CCcHHH-HHHHHHHHHHHHcCccccC--CCEEEEEeCCCCCCCcCHHHHHHHh----Ccccccc-cc--cc---------
Confidence 998654 7777888888876543334 9999999999997654444333222 2100000 00 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+. -......+.+++|||++|+| ++++++||.+
T Consensus 157 -~~------~~~~~~~~~~~~~Sa~~~~g---v~e~~~~l~~ 188 (190)
T cd00879 157 -SL------KVSGIRPIEVFMCSVVKRQG---YGEAFRWLSQ 188 (190)
T ss_pred -cc------cccCceeEEEEEeEecCCCC---hHHHHHHHHh
Confidence 00 00012347899999999999 9999999976
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=183.78 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=115.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+||+++|++|||||||+++++++.+...+ ||.+..+.. +..+.. .+.+|||||++.+.. ++..+++.++++++|
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv 79 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA-MQRLSISKGHAFILV 79 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH-HHHHHhhcCCEEEEE
Confidence 378999999999999999999998886554 555433332 344433 788999999999988 788888999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|+++.++ +.....|+..+........+++|+++|+||+|+.+.+.... ....+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~---------------------- 136 (165)
T cd04140 80 YSVTSKQS-LEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT---------------------- 136 (165)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH----------------------
Confidence 99998665 77777776555432111223499999999999976443221 1111111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
...+.+++|||++|+| ++++++||.++
T Consensus 137 ----------------~~~~~~~e~SA~~g~~---v~~~f~~l~~~ 163 (165)
T cd04140 137 ----------------EWNCAFMETSAKTNHN---VQELFQELLNL 163 (165)
T ss_pred ----------------HhCCcEEEeecCCCCC---HHHHHHHHHhc
Confidence 1126789999999999 99999999864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=183.04 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=118.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++..+.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..++++++++++|
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv 81 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA-VTRSYYRGAAGALMV 81 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhcCCCEEEEE
Confidence 79999999999999999999999887666 45555543 3455654 789999999999988 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ ++.+..|+..+... ..++.|+++|+||+|+...+... +....+.+.
T Consensus 82 ~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~--------------------- 136 (166)
T cd04122 82 YDITRRST-YNHLSSWLTDARNL---TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE--------------------- 136 (166)
T ss_pred EECCCHHH-HHHHHHHHHHHHHh---CCCCCeEEEEEECcccccccCcCHHHHHHHHHH---------------------
Confidence 99999665 88888888776542 22348999999999997655432 111112111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.++++|||++|+| ++++++++.+
T Consensus 137 -----------------~~~~~~e~Sa~~~~~---i~e~f~~l~~ 161 (166)
T cd04122 137 -----------------NGLLFLECSAKTGEN---VEDAFLETAK 161 (166)
T ss_pred -----------------cCCEEEEEECCCCCC---HHHHHHHHHH
Confidence 126889999999999 9999988864
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=184.51 Aligned_cols=159 Identities=25% Similarity=0.397 Sum_probs=122.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc------c-ccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY------F-ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~------~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+|+++|++|||||||++++.+... . ...||++.+...+.+++..+.+|||||++.+.. ++..++..+|++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~v~ 79 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS-LWDKYYAECHAIIY 79 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHH-HHHHHhCCCCEEEE
Confidence 589999999999999999986432 1 224777888888888888999999999999988 68889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|++++.+ +.....++..+++.....+ +|+++++||+|+.......+..+.+...... .
T Consensus 80 vvd~~~~~~-~~~~~~~~~~~~~~~~~~~--~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~-----------~------ 139 (167)
T cd04160 80 VIDSTDRER-FEESKSALEKVLRNEALEG--VPLLILANKQDLPDALSVEEIKEVFQDKAEE-----------I------ 139 (167)
T ss_pred EEECchHHH-HHHHHHHHHHHHhChhhcC--CCEEEEEEccccccCCCHHHHHHHhcccccc-----------c------
Confidence 999988654 7778888888776543334 9999999999997665544433333211100 0
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-...++++++||++|+| ++++++||.+
T Consensus 140 ---------------~~~~~~~~~~Sa~~g~g---v~e~~~~l~~ 166 (167)
T cd04160 140 ---------------GRRDCLVLPVSALEGTG---VREGIEWLVE 166 (167)
T ss_pred ---------------cCCceEEEEeeCCCCcC---HHHHHHHHhc
Confidence 01237899999999999 9999999974
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=180.99 Aligned_cols=154 Identities=21% Similarity=0.293 Sum_probs=120.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++..+.+.+.+ ||++.+.. .+.+++. .+.+||++|++.+.. ++..+++++|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT-ITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh-hHHHHhcCCcEEEEE
Confidence 48999999999999999999999887654 67776543 4566664 788999999999888 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
||++++++ +..+..|+..+.... ..++|+++|+||+|+...+... +....+.+..
T Consensus 80 ~d~~~~~s-f~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~-------------------- 135 (161)
T cd04117 80 YDISSERS-YQHIMKWVSDVDEYA---PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEY-------------------- 135 (161)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCHHHHHHHHHHc--------------------
Confidence 99999655 888888877765432 2348999999999997665432 2222222211
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
..++++|||++|.| ++++++||.++
T Consensus 136 ------------------~~~~~e~Sa~~~~~---v~~~f~~l~~~ 160 (161)
T cd04117 136 ------------------GMDFFETSACTNSN---IKESFTRLTEL 160 (161)
T ss_pred ------------------CCEEEEEeCCCCCC---HHHHHHHHHhh
Confidence 16789999999999 99999999864
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=189.54 Aligned_cols=114 Identities=22% Similarity=0.264 Sum_probs=97.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+||+++|.+|||||||+++|..+.+....||++.......+....+.+|||||++.+.. ++..+++++|++|+|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~-l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHG-LGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchh-hHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999999987767888776665555556899999999999988 78889999999999999999
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.++ +..+..||..+.... ..++|+++|+||+||.+
T Consensus 80 ~~S-f~~l~~~~~~l~~~~---~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 80 VQS-LEELEDRFLGLTDTA---NEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECccccc
Confidence 655 888888888876532 23489999999999975
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=180.40 Aligned_cols=157 Identities=24% Similarity=0.409 Sum_probs=127.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
||+++|++|||||||++++++..+....+|.+.....+.+++..+.+||+||+..+.. .+..++.++|++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP-LWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHH-HHHHHhccCCEEEEEEECCCH
Confidence 6899999999999999999998876677888888888888888999999999999888 688899999999999999986
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+ +.....++..+...... .+.|+++|+||+|+.......+..+.+....
T Consensus 80 ~~-~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--------------------------- 129 (158)
T cd00878 80 ER-IEEAKEELHKLLNEEEL--KGVPLLIFANKQDLPGALSVSELIEKLGLEK--------------------------- 129 (158)
T ss_pred HH-HHHHHHHHHHHHhCccc--CCCcEEEEeeccCCccccCHHHHHHhhChhh---------------------------
Confidence 54 88888888888765433 3499999999999987664444333322100
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++++++||++|.| +++++++|.+
T Consensus 130 -------~~~~~~~~~~~Sa~~~~g---v~~~~~~l~~ 157 (158)
T cd00878 130 -------ILGRRWHIQPCSAVTGDG---LDEGLDWLLQ 157 (158)
T ss_pred -------ccCCcEEEEEeeCCCCCC---HHHHHHHHhh
Confidence 012347899999999999 9999999864
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=185.65 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=116.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|.+++|||||+.++..+.+...+ ||++..+. .+.+++. .+.+|||+|++.++. ++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~-~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc-cchhhcCCCcEEEEEE
Confidence 58999999999999999999999997665 67765443 3566655 889999999999998 7888999999999999
Q ss_pred eCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC----------H-HHHHHHHHHHHHHHhhhcccc
Q psy1914 88 DSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTLAKS----------S-SVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 88 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~-~~~~~~l~~~~~~~~~~~~~~ 155 (211)
|.+++.+ ++.+ ..|+..+.+.. .++|+++|+||+||.+.+. . .+....+.+.
T Consensus 81 d~~~~~S-f~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~----------- 144 (176)
T cd04133 81 SLISRAS-YENVLKKWVPELRHYA----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ----------- 144 (176)
T ss_pred EcCCHHH-HHHHHHHHHHHHHHhC----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH-----------
Confidence 9999665 8887 46766664432 2499999999999965421 1 1111111111
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcE-EEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQV-SFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
... .+++|||++|+| |+++++.+.+
T Consensus 145 ---------------------------~~~~~~~E~SAk~~~n---V~~~F~~~~~ 170 (176)
T cd04133 145 ---------------------------IGAAAYIECSSKTQQN---VKAVFDAAIK 170 (176)
T ss_pred ---------------------------cCCCEEEECCCCcccC---HHHHHHHHHH
Confidence 113 689999999999 9999998865
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=182.21 Aligned_cols=155 Identities=22% Similarity=0.284 Sum_probs=128.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..-+||+++|.++||||+++.++..+.|...+ .|+|. ...++++++. .+++|||+|+++|+. +...|+++|+++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t-i~~sYyrgA~gi 88 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT-ITTAYYRGAMGI 88 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH-HHHHHHhhcCee
Confidence 45689999999999999999999999997766 45554 4556788887 889999999999999 899999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|||+++ +.+++.+..|+..+-++. ..++|+++||||+|+...+.+ .+..+.+..++.
T Consensus 89 ~LvyDitn-e~Sfeni~~W~~~I~e~a---~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G---------------- 148 (207)
T KOG0078|consen 89 LLVYDITN-EKSFENIRNWIKNIDEHA---SDDVVKILVGNKCDLEEKRQVSKERGEALAREYG---------------- 148 (207)
T ss_pred EEEEEccc-hHHHHHHHHHHHHHHhhC---CCCCcEEEeeccccccccccccHHHHHHHHHHhC----------------
Confidence 99999999 455999999777776543 235999999999999987664 344455655555
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
+.|+++|||+|.| |+|.+--|.
T Consensus 149 ----------------------~~F~EtSAk~~~N---I~eaF~~La 170 (207)
T KOG0078|consen 149 ----------------------IKFFETSAKTNFN---IEEAFLSLA 170 (207)
T ss_pred ----------------------CeEEEccccCCCC---HHHHHHHHH
Confidence 8999999999999 999886654
|
|
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=185.44 Aligned_cols=157 Identities=18% Similarity=0.297 Sum_probs=120.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..++||+++|++|||||||++++.++.+...+ ||++..+. .+.+++. .+.+|||||++.+.. ++..+++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA-MRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh-hHHHHhhcCCEEE
Confidence 45789999999999999999999998886555 55554443 3556655 688999999999998 7899999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ ++.+..|+..+..... ..++|+++|+||+|+.+...... ....+.+..
T Consensus 82 lv~D~s~~~s-~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~------------------ 140 (189)
T PTZ00369 82 CVYSITSRSS-FEEIASFREQILRVKD--KDRVPMILVGNKCDLDSERQVSTGEGQELAKSF------------------ 140 (189)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHHHHHh------------------
Confidence 9999999665 8888887777664322 23489999999999975443221 111111111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|.| ++++++||.+
T Consensus 141 --------------------~~~~~e~Sak~~~g---i~~~~~~l~~ 164 (189)
T PTZ00369 141 --------------------GIPFLETSAKQRVN---VDEAFYELVR 164 (189)
T ss_pred --------------------CCEEEEeeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999964
|
|
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=182.50 Aligned_cols=153 Identities=18% Similarity=0.263 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
||+++|.+|||||||++++.++.+...+ ||++..+ ..+.+++. .+.+|||||++.+.. ++..+++++|++++|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC-IASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh-hHHHHhcCCCEEEEEE
Confidence 7999999999999999999999887666 6766554 34556654 799999999999988 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH---HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS---VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|++++.+ +.....|+..+++..... ..|+++|+||+|+.+..... +....+.+.+
T Consensus 81 d~~~~~s-~~~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~------------------- 138 (170)
T cd04108 81 DLTDVAS-LEHTRQWLEDALKENDPS--SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM------------------- 138 (170)
T ss_pred ECcCHHH-HHHHHHHHHHHHHhcCCC--CCeEEEEEEChhcCccccccccHHHHHHHHHHc-------------------
Confidence 9988554 788888887776543222 37899999999996543321 1111111111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 139 -------------------~~~~~e~Sa~~g~~---v~~lf~~l~~ 162 (170)
T cd04108 139 -------------------QAEYWSVSALSGEN---VREFFFRVAA 162 (170)
T ss_pred -------------------CCeEEEEECCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999998865
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=186.34 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=117.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEec-Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYE-KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~-~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|++|||||||+++|.++.+...+ ||++... ..+.++ +. .+.+|||||++.+.. ++..++++++++|+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~a~~~il 79 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG-MTRVYYRGAVGAII 79 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh-hHHHHhCCCCEEEE
Confidence 58999999999999999999998886655 6666443 345665 43 789999999999988 78999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCc-CCCCCcEEEEEeCCCccCCC--CHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQV-QSSRVNILVCCNKQDQTLAK--SSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|||++++.+ ++.+..|+..+...... ...++|+++|+||+|+...+ ..++.. .+.+..
T Consensus 80 v~D~t~~~s-~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~-~~~~~~----------------- 140 (201)
T cd04107 80 VFDVTRPST-FEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMD-QFCKEN----------------- 140 (201)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHH-HHHHHc-----------------
Confidence 999999665 88887776665432111 12358999999999997422 222222 221111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++|||++|+| ++++++||.+
T Consensus 141 --------------------~~~~~~e~Sak~~~~---v~e~f~~l~~ 165 (201)
T cd04107 141 --------------------GFIGWFETSAKEGIN---IEEAMRFLVK 165 (201)
T ss_pred --------------------CCceEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999975
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=183.21 Aligned_cols=161 Identities=23% Similarity=0.326 Sum_probs=121.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEe-----cCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY-----EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+||+++|++|||||||++++..+.+....||.+.....+++ .+..+.+|||||++.+.. ++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP-LWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHH-HHHHHhccCCEEE
Confidence 3589999999999999999999998887777887766655544 223899999999999988 7999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +.....++..+....... ++|+++|+||+|+.+.....+....+. +.. .
T Consensus 81 ~v~D~~~~~~-~~~~~~~~~~i~~~~~~~--~~p~iiv~NK~D~~~~~~~~~~~~~~~--~~~-----~----------- 139 (183)
T cd04152 81 FVVDSVDVER-MEEAKTELHKITRFSENQ--GVPVLVLANKQDLPNALSVSEVEKLLA--LHE-----L----------- 139 (183)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHhhhhcC--CCcEEEEEECcCccccCCHHHHHHHhC--ccc-----c-----------
Confidence 9999998654 777777777666532222 489999999999975444333221111 000 0
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.-...+++++|||++|+| ++++++||.+
T Consensus 140 ---------------~~~~~~~~~~~SA~~~~g---i~~l~~~l~~ 167 (183)
T cd04152 140 ---------------SASTPWHVQPACAIIGEG---LQEGLEKLYE 167 (183)
T ss_pred ---------------CCCCceEEEEeecccCCC---HHHHHHHHHH
Confidence 001226789999999999 9999999874
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=183.89 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=117.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++..+.+...+ ||++.... .+.+++. .+.+|||+|++.+.. ++..+++++|++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN-MLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH-hhHHHCcCCCEEEEE
Confidence 58999999999999999999999987765 77776553 4666665 789999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
||++++.+ +..+..|+..+.+.. ....| ++|+||+|+.......... .+.++......
T Consensus 80 ~D~t~~~s-~~~i~~~~~~~~~~~---~~~~p-ilVgnK~Dl~~~~~~~~~~-~~~~~~~~~a~---------------- 137 (182)
T cd04128 80 FDLTRKST-LNSIKEWYRQARGFN---KTAIP-ILVGTKYDLFADLPPEEQE-EITKQARKYAK---------------- 137 (182)
T ss_pred EECcCHHH-HHHHHHHHHHHHHhC---CCCCE-EEEEEchhccccccchhhh-hhHHHHHHHHH----------------
Confidence 99999665 888888887776532 12367 6789999996432111100 01111110000
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.++++|||++|+| ++++++||.+
T Consensus 138 ---------------~~~~~~~e~SAk~g~~---v~~lf~~l~~ 163 (182)
T cd04128 138 ---------------AMKAPLIFCSTSHSIN---VQKIFKIVLA 163 (182)
T ss_pred ---------------HcCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 0116789999999999 9999999864
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=183.93 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=92.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++.++.+...+ ||++..+. .+.+++. .+.+|||+|++.+.. +.+.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~-~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN-VRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh-cchhhcCCCCEEEEE
Confidence 479999999999999999999999887666 66655443 3566665 788999999999988 788899999999999
Q ss_pred EeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 87 LDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 87 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
||++++.+ ++.+ ..|+..+.+.. ++.|+++|+||+||.+
T Consensus 80 fdit~~~S-f~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~ 119 (178)
T cd04131 80 FDISRPET-LDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRT 119 (178)
T ss_pred EECCChhh-HHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhc
Confidence 99999665 8775 56655554321 3489999999999964
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=187.22 Aligned_cols=156 Identities=14% Similarity=0.188 Sum_probs=117.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecC---ceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEK---KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|++|||||||+++|.++.+...+ ||++... ..+.+++ ..+.+|||||++.+.. ++..+++++|++|+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~-l~~~~~~~ad~iil 79 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK-MLDKYIYGAHAVFL 79 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH-HHHHHhhcCCEEEE
Confidence 58999999999999999999998887665 6766544 3456644 2889999999999888 78899999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|||++++++ ++.+..|+..+.........+.|+++|+||+|+.+.+... +....+.+..
T Consensus 80 V~D~t~~~s-~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~------------------- 139 (215)
T cd04109 80 VYDVTNSQS-FENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN------------------- 139 (215)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc-------------------
Confidence 999999665 8888777766654322112347899999999997544322 1122222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 140 -------------------~~~~~~iSAktg~g---v~~lf~~l~~ 163 (215)
T cd04109 140 -------------------GMESCLVSAKTGDR---VNLLFQQLAA 163 (215)
T ss_pred -------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 15678999999999 9999999875
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=185.22 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
||+++|.+|||||||+++|+.+.+...+ ||++... ..+.+++. .+.+|||||++.+.. ++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA-LRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHHHhCCEEEEEEE
Confidence 5899999999999999999998886655 4554333 33556655 588999999999998 78889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
+++..+ +..+..|+..+.........++|+++|+||+|+...+..... ...+.+.+
T Consensus 80 ~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~---------------------- 136 (190)
T cd04144 80 ITSRST-FERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRL---------------------- 136 (190)
T ss_pred CCCHHH-HHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHh----------------------
Confidence 998654 778888777665432211234899999999999754432211 11111111
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.++++||++|+| ++++++||.+
T Consensus 137 ----------------~~~~~e~SAk~~~~---v~~l~~~l~~ 160 (190)
T cd04144 137 ----------------GCEFIEASAKTNVN---VERAFYTLVR 160 (190)
T ss_pred ----------------CCEEEEecCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999875
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=180.20 Aligned_cols=153 Identities=19% Similarity=0.264 Sum_probs=117.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++++...+ ||.+..+. .+..++. .+.+|||||++.+.. ++..++++++++++|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~-~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT-ITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHccCCcEEEEE
Confidence 68999999999999999999999986654 66654433 3444443 789999999999988 788999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ ++.+..|+..+.... ....|+++|+||+|+.+.+... +....+.+.++
T Consensus 81 ~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------- 137 (165)
T cd01865 81 YDITNEES-FNAVQDWSTQIKTYS---WDNAQVILVGNKCDMEDERVVSSERGRQLADQLG------------------- 137 (165)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhC---CCCCCEEEEEECcccCcccccCHHHHHHHHHHcC-------------------
Confidence 99998654 888888877765422 1248999999999997654321 11122222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|.| +++++++|.+
T Consensus 138 -------------------~~~~~~Sa~~~~g---v~~l~~~l~~ 160 (165)
T cd01865 138 -------------------FEFFEASAKENIN---VKQVFERLVD 160 (165)
T ss_pred -------------------CEEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=179.95 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=117.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc-eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK-ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~-~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++..+.+...+ ||++ .....+.+++. .+.+|||||++++.. ++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-MRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccc-hHHHHHhhCCEEEEE
Confidence 479999999999999999999999887665 4433 23334666665 678999999999988 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ +.....|+..+...... .++|+++|+||+|+........ ....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-------------------- 136 (163)
T cd04176 80 YSLVNQQT-FQDIKPMRDQIVRVKGY--EKVPIILVGNKVDLESEREVSSAEGRALAEEW-------------------- 136 (163)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccchhcCccCHHHHHHHHHHh--------------------
Confidence 99999665 88888887777653222 3499999999999965433221 111121111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|.| ++++++||.+
T Consensus 137 ------------------~~~~~~~Sa~~~~~---v~~l~~~l~~ 160 (163)
T cd04176 137 ------------------GCPFMETSAKSKTM---VNELFAEIVR 160 (163)
T ss_pred ------------------CCEEEEecCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999874
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=182.23 Aligned_cols=156 Identities=18% Similarity=0.285 Sum_probs=118.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecC------------ceEEEEECCCchhhhhhhHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEK------------KNIKIVDLPGEDRLRNKFFD 74 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~------------~~~~i~D~~G~~~~~~~~~~ 74 (211)
..+||+++|++|||||||++++..+.+...+ +|++.... .+.+.. ..+.+|||||++.+.. ++.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~ 81 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRS-LTT 81 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHH-HHH
Confidence 4589999999999999999999998886655 55554433 244331 2789999999999988 788
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcc
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~ 153 (211)
.+++++|++++|+|++++++ +..+..|+..+...... .+.|+++|+||+|+.+.+... +....+.+..+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~------- 151 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQS-FLNVRNWMSQLQTHAYC--ENPDIVLCGNKADLEDQRQVSEEQAKALADKYG------- 151 (180)
T ss_pred HHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-------
Confidence 89999999999999999655 88888887776543222 248999999999997654322 11222222111
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 152 -------------------------------~~~~e~Sak~~~~---v~~l~~~l~~ 174 (180)
T cd04127 152 -------------------------------IPYFETSAATGTN---VEKAVERLLD 174 (180)
T ss_pred -------------------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999875
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-30 Score=175.35 Aligned_cols=162 Identities=25% Similarity=0.374 Sum_probs=142.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+.++.+.++|..+||||||+|....+.+.... ||.|++...++-.+..+.+||.||++.|+. +|+.|++++++++||
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs-mWerycR~v~aivY~ 95 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-MWERYCRGVSAIVYV 95 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHH-HHHHHhhcCcEEEEE
Confidence 467899999999999999999999998887776 999999999998888999999999999999 899999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+.+++. +..++.++..++..+.+.+ +|+++++||.|++++-...++.+.+. +.++
T Consensus 96 VDaad~~k-~~~sr~EL~~LL~k~~l~g--ip~LVLGnK~d~~~AL~~~~li~rmg-------------L~si------- 152 (186)
T KOG0075|consen 96 VDAADPDK-LEASRSELHDLLDKPSLTG--IPLLVLGNKIDLPGALSKIALIERMG-------------LSSI------- 152 (186)
T ss_pred eecCCccc-chhhHHHHHHHhcchhhcC--CcEEEecccccCcccccHHHHHHHhC-------------cccc-------
Confidence 99999766 8899999999999988888 99999999999998877655444332 1111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-.+.+.++.+|++...+ |+.+.+||.+
T Consensus 153 --------------tdREvcC~siScke~~N---id~~~~Wli~ 179 (186)
T KOG0075|consen 153 --------------TDREVCCFSISCKEKVN---IDITLDWLIE 179 (186)
T ss_pred --------------ccceEEEEEEEEcCCcc---HHHHHHHHHH
Confidence 14569999999999999 9999999975
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=183.30 Aligned_cols=166 Identities=12% Similarity=0.154 Sum_probs=115.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|.+|||||||++++..+.+...+ ||++..+. .+.+++. .+.+|||+|++.+.. ++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR-LRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh-hhhhhcccCCEEEEEE
Confidence 68999999999999999999999986555 77766554 4566664 788999999999988 7888999999999999
Q ss_pred eCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++++ ++.+.. |+..+... . +++|+++|+||+|+.+.... .+.+.. ......+. ++..
T Consensus 81 d~~~~~s-~~~~~~~w~~~i~~~--~--~~~piilvgnK~Dl~~~~~~---~~~l~~----~~~~~v~~-------~~~~ 141 (175)
T cd01874 81 SVVSPSS-FENVKEKWVPEITHH--C--PKTPFLLVGTQIDLRDDPST---IEKLAK----NKQKPITP-------ETGE 141 (175)
T ss_pred ECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEECHhhhhChhh---HHHhhh----ccCCCcCH-------HHHH
Confidence 9999655 888865 54444332 1 34899999999999654221 111110 00000000 0000
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+. .-.+.+.+++|||++|+| ++++++.+.+
T Consensus 142 ~~a----------~~~~~~~~~e~SA~tg~~---v~~~f~~~~~ 172 (175)
T cd01874 142 KLA----------RDLKAVKYVECSALTQKG---LKNVFDEAIL 172 (175)
T ss_pred HHH----------HHhCCcEEEEecCCCCCC---HHHHHHHHHH
Confidence 000 001226899999999999 9999988764
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=180.61 Aligned_cols=151 Identities=15% Similarity=0.268 Sum_probs=115.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe--cCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY--EKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~--~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++..+.+...+ ||.+.....+.+ ++. .+.+|||||++.+.. ++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-LRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-ccHHHhcCCCEEEEE
Confidence 58999999999999999999988775544 666666555433 332 889999999998887 678889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +..+..|+..+..... ++|+++|+||+|+........ ...+.+
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~~~~~-~~~~~~----------------------- 130 (166)
T cd00877 80 FDVTSRVT-YKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRKVKAK-QITFHR----------------------- 130 (166)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhCC----CCcEEEEEEchhcccccCCHH-HHHHHH-----------------------
Confidence 99998665 7778777777765321 499999999999974332211 111111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++|||++|+| ++++++||.+
T Consensus 131 ---------------~~~~~~~e~Sa~~~~~---v~~~f~~l~~ 156 (166)
T cd00877 131 ---------------KKNLQYYEISAKSNYN---FEKPFLWLAR 156 (166)
T ss_pred ---------------HcCCEEEEEeCCCCCC---hHHHHHHHHH
Confidence 1126889999999999 9999999974
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=181.77 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=114.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||+.++..+.+...+ ||++.... .+.+++. .+.+|||||++.+.. ++..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-LRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhh-hhhhhcCCCCEEEEE
Confidence 479999999999999999999998887665 55544332 3555554 788999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
||++++++ +......|...+... . +++|+++|+||+|+.+..... +.+... .....+..+. .
T Consensus 80 ~d~~~~~s-f~~~~~~~~~~~~~~-~--~~~piilvgnK~Dl~~~~~~~---~~~~~~----~~~~v~~~~~-------~ 141 (174)
T cd01871 80 FSLVSPAS-FENVRAKWYPEVRHH-C--PNTPIILVGTKLDLRDDKDTI---EKLKEK----KLTPITYPQG-------L 141 (174)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEeeChhhccChhhH---HHHhhc----cCCCCCHHHH-------H
Confidence 99999665 888765444333322 1 349999999999996433211 011000 0000000000 0
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+ ..-.+...+++|||++|+| ++++++.+.+
T Consensus 142 ~~----------~~~~~~~~~~e~Sa~~~~~---i~~~f~~l~~ 172 (174)
T cd01871 142 AM----------AKEIGAVKYLECSALTQKG---LKTVFDEAIR 172 (174)
T ss_pred HH----------HHHcCCcEEEEecccccCC---HHHHHHHHHH
Confidence 00 0001125889999999999 9999998864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=182.64 Aligned_cols=116 Identities=18% Similarity=0.183 Sum_probs=94.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
...+||+++|.++||||||++++..+.+...+ ||++..+. .+.+++. .+.+|||+|++.+.. ++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~-~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-VRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh-hhhhhcCCCCEEE
Confidence 45789999999999999999999999987766 66655443 3556665 789999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 85 YVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+|||++++.+ ++.+ ..|+..+.... ++.|+++|+||+||.+
T Consensus 82 lvyDit~~~S-f~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 123 (182)
T cd04172 82 ICFDISRPET-LDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhc
Confidence 9999999665 8887 56665554321 3489999999999964
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=188.19 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=93.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
..+||+++|++|||||||+++|..+.|...+ ||++..+.. +.+++. .+.+|||+|++.|.. +...+++++|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~-~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDN-VRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHH-HHHHHcCCCcEEEE
Confidence 4679999999999999999999999987766 676655432 556655 899999999999988 78889999999999
Q ss_pred EEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 86 VLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 86 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
|||++++.+ +..+ ..|+..+.... ++.|+++|+||+||..
T Consensus 91 VyDit~~~S-f~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 131 (232)
T cd04174 91 CFDISRPET-VDSALKKWKAEIMDYC----PSTRILLIGCKTDLRT 131 (232)
T ss_pred EEECCChHH-HHHHHHHHHHHHHHhC----CCCCEEEEEECccccc
Confidence 999999665 7764 56666554321 2489999999999964
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=188.23 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=119.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEE--ecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFT--YEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~--~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|.+|||||||+++++.+.+...+ ||++....... .++. .+.+|||+|++.+.. ++..++++++++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~ 89 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCA 89 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh-hhHHHcccccEE
Confidence 56789999999999999999999998886654 77776655443 3433 899999999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
|+|||+++..+ +..+..|+..+.... .++|+++|+||+|+.......+.. .+.+
T Consensus 90 ilvfD~~~~~s-~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~~~~-~~~~-------------------- 143 (219)
T PLN03071 90 IIMFDVTARLT-YKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQV-TFHR-------------------- 143 (219)
T ss_pred EEEEeCCCHHH-HHHHHHHHHHHHHhC----CCCcEEEEEEchhhhhccCCHHHH-HHHH--------------------
Confidence 99999999655 888888877776431 349999999999996432211111 1111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|.| ++++++||.+
T Consensus 144 ------------------~~~~~~~e~SAk~~~~---i~~~f~~l~~ 169 (219)
T PLN03071 144 ------------------KKNLQYYEISAKSNYN---FEKPFLYLAR 169 (219)
T ss_pred ------------------hcCCEEEEcCCCCCCC---HHHHHHHHHH
Confidence 1126789999999999 9999999874
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=178.80 Aligned_cols=157 Identities=24% Similarity=0.386 Sum_probs=120.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
.|+++|++|||||||++++.++.+...+ ||++.....+..++..+.+||+||+..++. ++..+++++|++++|+|+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRK-YWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhH-HHHHHHhhCCEEEEEEECCC
Confidence 3799999999999999999988776554 777776666666666999999999999988 79999999999999999999
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
+.+ +.....|+..++... .++|+++|+||+|+...+....+...+. +..+ ..
T Consensus 80 ~~s-~~~~~~~l~~~~~~~----~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~~--~~------------------- 131 (164)
T cd04162 80 SER-LPLARQELHQLLQHP----PDLPLVVLANKQDLPAARSVQEIHKELE--LEPI--AR------------------- 131 (164)
T ss_pred HHH-HHHHHHHHHHHHhCC----CCCcEEEEEeCcCCcCCCCHHHHHHHhC--Chhh--cC-------------------
Confidence 664 778888888876532 3499999999999987765554333221 1100 00
Q ss_pred CCCCeeecCCCCcEEEEEEeeec------CCCccchHHHHHHHhhC
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLD------SASEYDVEQLQDWMVTL 211 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~t------g~g~~~i~~l~~~i~~l 211 (211)
...+.+++|||++ ++| ++++++.+..+
T Consensus 132 ----------~~~~~~~~~Sa~~~~s~~~~~~---v~~~~~~~~~~ 164 (164)
T cd04162 132 ----------GRRWILQGTSLDDDGSPSRMEA---VKDLLSQLINL 164 (164)
T ss_pred ----------CCceEEEEeeecCCCChhHHHH---HHHHHHHHhcC
Confidence 1236677788777 999 99999988654
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=177.59 Aligned_cols=156 Identities=16% Similarity=0.283 Sum_probs=116.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++++++.+...+ ||++.... .+..++. .+.+|||||++.+.. ++..+++++|++|+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE-VRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH-HHHHHhccCCEEEEE
Confidence 58999999999999999999999886655 56665443 3555554 889999999999887 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCc--CCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQV--QSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|++++.+ +.....|+..+.+...- ...+.|+++|+||+|+.+.... .+....+.+.
T Consensus 80 ~D~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------------- 139 (168)
T cd04119 80 YDVTDRQS-FEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES------------------- 139 (168)
T ss_pred EECCCHHH-HHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-------------------
Confidence 99999655 77777777776543211 0134899999999999743321 1111111111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| +++++++|.+
T Consensus 140 -------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 164 (168)
T cd04119 140 -------------------KGFKYFETSACTGEG---VNEMFQTLFS 164 (168)
T ss_pred -------------------cCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=178.05 Aligned_cols=155 Identities=15% Similarity=0.260 Sum_probs=117.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+||+++|++|+|||||+++++++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA-MREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH-HHHHHHhhCCEEEEE
Confidence 579999999999999999999988876555 4444322 23456664 688999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ +.....|+..+.+... ..++|+++|+||+|+........ ....+.+.
T Consensus 81 ~d~~~~~s-~~~~~~~~~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~--------------------- 136 (164)
T cd04145 81 FSVTDRGS-FEEVDKFHTQILRVKD--RDEFPMILVGNKADLEHQRKVSREEGQELARK--------------------- 136 (164)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHhC--CCCCCEEEEeeCccccccceecHHHHHHHHHH---------------------
Confidence 99999665 8888888777765322 23489999999999976543221 11111111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++++++|.+
T Consensus 137 -----------------~~~~~~~~Sa~~~~~---i~~l~~~l~~ 161 (164)
T cd04145 137 -----------------LKIPYIETSAKDRLN---VDKAFHDLVR 161 (164)
T ss_pred -----------------cCCcEEEeeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=177.80 Aligned_cols=154 Identities=22% Similarity=0.275 Sum_probs=119.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||++++.++.+...+ ||.+... ..+.+++. .+.+|||||++.+.. ++..+++++|++++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~ad~~i~ 81 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-ITTAYYRGAMGIIL 81 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH-HHHHHhCCCCEEEE
Confidence 479999999999999999999999887665 6665543 34566665 789999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++++ +..+..|+..+.... ..+.|+++|+||+|+.+.+... +....+.+..
T Consensus 82 v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------------------- 138 (167)
T cd01867 82 VYDITDEKS-FENIRNWMRNIEEHA---SEDVERMLVGNKCDMEEKRVVSKEEGEALADEY------------------- 138 (167)
T ss_pred EEECcCHHH-HHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-------------------
Confidence 999998665 888888877775432 2348999999999998654321 1111121111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|.| +++++++|.+
T Consensus 139 -------------------~~~~~~~Sa~~~~~---v~~~~~~i~~ 162 (167)
T cd01867 139 -------------------GIKFLETSAKANIN---VEEAFFTLAK 162 (167)
T ss_pred -------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999875
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=179.32 Aligned_cols=162 Identities=20% Similarity=0.344 Sum_probs=126.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
..+.++|+++|++|||||||++++.+..+....||.+.+...+.+++..+.+||+||+..+.. .+..+++.++++++|+
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRP-YWRNYFENTDCLIYVI 89 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHH-HHHHHhcCCCEEEEEE
Confidence 355799999999999999999999998776666888888888888888999999999998887 6888889999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|+++..+ +.....++..++......+ +|+++++||+|+.......++.+. ++. . .
T Consensus 90 D~~~~~~-~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~i~~~----l~~---~---~------------ 144 (173)
T cd04155 90 DSADKKR-LEEAGAELVELLEEEKLAG--VPVLVFANKQDLATAAPAEEIAEA----LNL---H---D------------ 144 (173)
T ss_pred eCCCHHH-HHHHHHHHHHHHhChhhcC--CCEEEEEECCCCccCCCHHHHHHH----cCC---c---c------------
Confidence 9998554 7777777777765433333 999999999999765544332221 110 0 0
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-....+++++|||++|+| ++++++||.+
T Consensus 145 ------------~~~~~~~~~~~Sa~~~~g---i~~~~~~l~~ 172 (173)
T cd04155 145 ------------LRDRTWHIQACSAKTGEG---LQEGMNWVCK 172 (173)
T ss_pred ------------cCCCeEEEEEeECCCCCC---HHHHHHHHhc
Confidence 002336788999999999 9999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=177.37 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=115.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|||||||+++++++.+...+ +|+... ...+.+++. .+.+|||||++++.. ++..++++++++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA-MRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH-HHHHHHhhCCEEEEEE
Confidence 48999999999999999999998876655 343322 233455554 788999999999988 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++++ ++....|+..+...... .++|+++|+||+|+...+... +....+.+..
T Consensus 80 d~~~~~s-~~~~~~~~~~i~~~~~~--~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~--------------------- 135 (164)
T smart00173 80 SITDRQS-FEEIKKFREQILRVKDR--DDVPIVLVGNKCDLESERVVSTEEGKELARQW--------------------- 135 (164)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccceEcHHHHHHHHHHc---------------------
Confidence 9998655 77777777666543222 248999999999997644322 1111122111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|.| +++++++|.+
T Consensus 136 -----------------~~~~~~~Sa~~~~~---i~~l~~~l~~ 159 (164)
T smart00173 136 -----------------GCPFLETSAKERVN---VDEAFYDLVR 159 (164)
T ss_pred -----------------CCEEEEeecCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999864
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=183.34 Aligned_cols=175 Identities=46% Similarity=0.724 Sum_probs=123.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEe---cCceEEEEECCCchhhhhhhHHH--hhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY---EKKNIKIVDLPGEDRLRNKFFDQ--YKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~--~~~~~d~ii 84 (211)
++..|+++|++|||||+|+.+|..+...++.+++..+. .+.+ .+..+.++|+|||++.+..+... +...+.+||
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 45679999999999999999999998888887774444 3444 33489999999999988866665 578899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
||+|++.....+.++.++++.++.........+|++|++||.|+..+.....+...++++++.++..+..++.+.+.+.+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~lr~tr~~~l~~~d~~~~ 160 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDKLRKTRSKSLESVDEDDD 160 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH-------
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 99999865556888999999998876655567999999999999999999999999999999999999999888877777
Q ss_pred cccccCCCCCCeeecCCCCcE
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQV 185 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~ 185 (211)
...+++..++.|.|++++.++
T Consensus 161 ~~~~lg~~g~~F~F~~L~~~V 181 (181)
T PF09439_consen 161 ENEFLGKEGEDFTFEQLENNV 181 (181)
T ss_dssp ---TTS-TTS---GGGSSS-E
T ss_pred cccccCCCCCCcchhhccCCC
Confidence 778999999999999998764
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=175.48 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=127.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+|++++|+.|||||+|+.+++.+.|.+.+ .|+|...+ .++++++ ++++|||+|++.|++ ....||+++.++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs-v~~syYr~a~Ga 82 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS-VTRSYYRGAAGA 82 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH-HHHHHhccCcce
Confidence 45689999999999999999999999997766 57776655 4788887 899999999999999 799999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHH-HHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKT-LLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|||++..++ |.....|+.++.++. .++..+++++||+||...+.+...+. .+.++-.
T Consensus 83 lLVydit~r~s-F~hL~~wL~D~rq~~---~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg---------------- 142 (216)
T KOG0098|consen 83 LLVYDITRRES-FNHLTSWLEDARQHS---NENMVIMLIGNKSDLEARREVSKEEGEAFAREHG---------------- 142 (216)
T ss_pred EEEEEccchhh-HHHHHHHHHHHHHhc---CCCcEEEEEcchhhhhccccccHHHHHHHHHHcC----------------
Confidence 99999998665 999999999998764 24589999999999998877543332 2332222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
..+.++||+|++| ++|+|.-+
T Consensus 143 ----------------------LifmETSakt~~~---VEEaF~nt 163 (216)
T KOG0098|consen 143 ----------------------LIFMETSAKTAEN---VEEAFINT 163 (216)
T ss_pred ----------------------ceeehhhhhhhhh---HHHHHHHH
Confidence 5677999999999 99998654
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=177.09 Aligned_cols=153 Identities=27% Similarity=0.320 Sum_probs=117.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++.+...+ +|.+... ..+.+++. .+.+||+||++.+.. .+..+++++|++++|
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ii~v 81 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGIIIV 81 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH-HHHHHhCcCCEEEEE
Confidence 68999999999999999999998876554 5555433 34566654 789999999999988 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ +..+..|+..+.... ..+.|+++|+||+|+....... +....+.+.
T Consensus 82 ~d~~~~~s-~~~l~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~--------------------- 136 (166)
T cd01869 82 YDVTDQES-FNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTDKRVVDYSEAQEFADE--------------------- 136 (166)
T ss_pred EECcCHHH-HHhHHHHHHHHHHhC---CCCCcEEEEEEChhcccccCCCHHHHHHHHHH---------------------
Confidence 99999665 888888877765422 2348999999999997654332 111222211
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++++++|.+
T Consensus 137 -----------------~~~~~~~~Sa~~~~~---v~~~~~~i~~ 161 (166)
T cd01869 137 -----------------LGIPFLETSAKNATN---VEQAFMTMAR 161 (166)
T ss_pred -----------------cCCeEEEEECCCCcC---HHHHHHHHHH
Confidence 126889999999999 9999999865
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=181.76 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=119.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ ||++..+. .+.+++. .+.+||+||++.+.. ++..++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~a~~i 82 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT-ITSTYYRGTHGV 82 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH-HHHHHhCCCcEE
Confidence 34689999999999999999999998886554 66665443 4555554 788999999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++++ +..+..|+..+.... ...|+++|+||+|+.+..... +....+.+.
T Consensus 83 ilv~D~~~~~s-~~~~~~~~~~i~~~~----~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~------------------ 139 (199)
T cd04110 83 IVVYDVTNGES-FVNVKRWLQEIEQNC----DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ------------------ 139 (199)
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECcccccccccCHHHHHHHHHH------------------
Confidence 99999999665 888888887765432 248999999999997654432 111112111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++.++++||++|.| ++++++||.+
T Consensus 140 --------------------~~~~~~e~Sa~~~~g---i~~lf~~l~~ 164 (199)
T cd04110 140 --------------------MGISLFETSAKENIN---VEEMFNCITE 164 (199)
T ss_pred --------------------cCCEEEEEECCCCcC---HHHHHHHHHH
Confidence 116789999999999 9999999875
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=185.04 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=95.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||+++|..+.+...+ ||++..+. .+.+++. .+.+|||+|++.|.. +++.+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~-l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN-VRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH-HhHHhccCCCEEEEE
Confidence 479999999999999999999999988766 67766554 3566665 788999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
||++++++ ++.+..+|...+... . ++.|+++|+||+||...
T Consensus 80 fdis~~~S-f~~i~~~w~~~~~~~-~--~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 80 FDISRPET-LDSVLKKWQGETQEF-C--PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhh-C--CCCCEEEEEECcccccc
Confidence 99999765 888866665544332 1 34999999999999654
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=177.35 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=118.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||++++..+.+...+ ++.+... ..+.+++. .+.+||+||++++.. ++..+++++|++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~ 81 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS-LRTPFYRGSDCC 81 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH-hHHHHhcCCCEE
Confidence 35689999999999999999999998886544 5665543 34556555 788999999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcC-CCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQ-SSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ ++....|...++...... ..++|+++|+||+|+.......+....+.+..
T Consensus 82 i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------- 143 (170)
T cd04116 82 LLTFAVDDSQS-FQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----------------- 143 (170)
T ss_pred EEEEECCCHHH-HHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC-----------------
Confidence 99999998655 777777777666532211 23589999999999973322222122221111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| ++++++++.+
T Consensus 144 --------------------~~~~~~e~Sa~~~~~---v~~~~~~~~~ 168 (170)
T cd04116 144 --------------------GDYPYFETSAKDATN---VAAAFEEAVR 168 (170)
T ss_pred --------------------CCCeEEEEECCCCCC---HHHHHHHHHh
Confidence 114789999999999 9999999874
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=176.48 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||++++..+.+...+ +|.+. ....+.+++. .+.+|||||++.+.. ++..+++.+|+++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~l 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRT-ITQSYYRSANGAI 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHhccCCEEE
Confidence 3589999999999999999999998886655 45443 3345666664 789999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+... .....+.+..
T Consensus 81 lv~d~~~~~s-~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------------ 138 (165)
T cd01864 81 IAYDITRRSS-FESVPHWIEEVEKYG---ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKN------------------ 138 (165)
T ss_pred EEEECcCHHH-HHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHHHHc------------------
Confidence 9999999665 888888877775432 2348999999999997654321 1111222111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|+| +++++++|.+
T Consensus 139 -------------------~~~~~~e~Sa~~~~~---v~~~~~~l~~ 163 (165)
T cd01864 139 -------------------GMLAVLETSAKESQN---VEEAFLLMAT 163 (165)
T ss_pred -------------------CCcEEEEEECCCCCC---HHHHHHHHHH
Confidence 114679999999999 9999999875
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=182.92 Aligned_cols=155 Identities=19% Similarity=0.278 Sum_probs=119.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEec-Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYE-KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~-~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+||+++|++|||||||+++|.++.+...+ ||++..... +.+. +. .+.+|||||++.+.. ++..+++++|+++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~ii 80 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS-ITRSYYRNSVGVL 80 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH-HHHHHhcCCcEEE
Confidence 589999999999999999999998886654 666654433 4443 33 789999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|||++++++ +..+..|+..+...... ...|+++|+||+|+....... +....+.+..
T Consensus 81 lv~D~~~~~S-f~~l~~~~~~i~~~~~~--~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~------------------ 139 (211)
T cd04111 81 LVFDITNRES-FEHVHDWLEEARSHIQP--HRPVFILVGHKCDLESQRQVTREEAEKLAKDL------------------ 139 (211)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCeEEEEEEccccccccccCHHHHHHHHHHh------------------
Confidence 9999999665 88888888887654322 237899999999997644322 2222222211
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| +++++++|.+
T Consensus 140 --------------------~~~~~e~Sak~g~~---v~e~f~~l~~ 163 (211)
T cd04111 140 --------------------GMKYIETSARTGDN---VEEAFELLTQ 163 (211)
T ss_pred --------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999975
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=173.40 Aligned_cols=157 Identities=25% Similarity=0.397 Sum_probs=121.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
|+++|++|||||||++++.+..+...+ ||.+.+...+..++..+.+||+||+..++. .+..+++.+|++++|+|+++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRS-MWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHH-HHHHHHhcCCEEEEEEECCCH
Confidence 789999999999999999998876544 777777777777777899999999999988 688999999999999999885
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.. +.....++..++......+ +|+++|+||+|+.+.....+....+ .. ..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~~~~~~~~~~~~~~----~~------~~----------------- 130 (159)
T cd04159 81 TA-LEAAKNELHDLLEKPSLEG--IPLLVLGNKNDLPGALSVDELIEQM----NL------KS----------------- 130 (159)
T ss_pred HH-HHHHHHHHHHHHcChhhcC--CCEEEEEeCccccCCcCHHHHHHHh----Cc------cc-----------------
Confidence 54 7777778888776433333 8999999999997654433222111 10 00
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
.....++++++||++|.| ++++++||.++
T Consensus 131 -------~~~~~~~~~~~Sa~~~~g---i~~l~~~l~~~ 159 (159)
T cd04159 131 -------ITDREVSCYSISCKEKTN---IDIVLDWLIKH 159 (159)
T ss_pred -------ccCCceEEEEEEeccCCC---hHHHHHHHhhC
Confidence 001237889999999999 99999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=174.51 Aligned_cols=152 Identities=14% Similarity=0.218 Sum_probs=116.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEec--Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYE--KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~--~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+||+++|++|+|||||+++++++.+...+ ||++..+. .+.++ +. .+.+|||||++.+.. ++..+++++|+++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~v 79 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA-ITKAYYRGAQACI 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH-hHHHHhcCCCEEE
Confidence 58999999999999999999998876554 66665543 34454 33 799999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++++ +.....|+..+... . .++|+++|+||+|+....... +....+.+.++
T Consensus 80 ~v~d~~~~~s-~~~l~~~~~~~~~~--~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~----------------- 137 (162)
T cd04106 80 LVFSTTDRES-FEAIESWKEKVEAE--C--GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ----------------- 137 (162)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHh--C--CCCCEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------
Confidence 9999999665 77777777666432 2 249999999999997654422 11222222111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|.| ++++++||.+
T Consensus 138 ---------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 160 (162)
T cd04106 138 ---------------------LPLFRTSVKDDFN---VTELFEYLAE 160 (162)
T ss_pred ---------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999875
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=181.92 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=115.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.||+++|++|||||||++++..+.+...+ ||.+..+. .+..++. .+.+|||+|++.+.. ++..++++++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~-l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR-LRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc-cccccccCCCEEEEEE
Confidence 48999999999999999999999987665 66655443 3455554 789999999999887 7888899999999999
Q ss_pred eCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+ ++.+.. |+..+... . ++.|+++|+||+|+............... ...+.... .
T Consensus 80 dv~~~~s-f~~~~~~~~~~i~~~--~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~-------~~v~~~~~-------~ 140 (189)
T cd04134 80 SVDSPDS-LENVESKWLGEIREH--C--PGVKLVLVALKCDLREARNERDDLQRYGK-------HTISYEEG-------L 140 (189)
T ss_pred ECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEEChhhccChhhHHHHhhccC-------CCCCHHHH-------H
Confidence 9999665 777654 55555432 1 24999999999999765443322111000 00000000 0
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++ .-.+.+.+++|||++|+| ++++++||.+
T Consensus 141 ~~~----------~~~~~~~~~e~SAk~~~~---v~e~f~~l~~ 171 (189)
T cd04134 141 AVA----------KRINALRYLECSAKLNRG---VNEAFTEAAR 171 (189)
T ss_pred HHH----------HHcCCCEEEEccCCcCCC---HHHHHHHHHH
Confidence 000 001226789999999999 9999999975
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=174.07 Aligned_cols=154 Identities=23% Similarity=0.314 Sum_probs=117.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||++++.++.+... .||.+.... .+..++. .+.+||+||++.+.. ++..+++.++++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~ 81 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA-ITSAYYRGAVGALL 81 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH-HHHHHHCCCCEEEE
Confidence 36999999999999999999999887544 467665443 3555554 789999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+...+... +....+...
T Consensus 82 v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-------------------- 137 (165)
T cd01868 82 VYDITKKQT-FENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-------------------- 137 (165)
T ss_pred EEECcCHHH-HHHHHHHHHHHHHhC---CCCCeEEEEEECccccccccCCHHHHHHHHHH--------------------
Confidence 999998665 888888877766532 1248999999999997654321 111111110
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+++|||++|+| +++++++|.+
T Consensus 138 ------------------~~~~~~~~Sa~~~~~---v~~l~~~l~~ 162 (165)
T cd01868 138 ------------------NGLSFIETSALDGTN---VEEAFKQLLT 162 (165)
T ss_pred ------------------cCCEEEEEECCCCCC---HHHHHHHHHH
Confidence 126789999999999 9999999864
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=178.60 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=116.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-c-ccccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFE-S-CTSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~-~~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|++|||||||++++..+.+.. . .+|++.... .+.+++. .+.+|||||++.+.. .+..+++.+|++++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS-VTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH-hhHHHccCCCEEEE
Confidence 589999999999999999999988753 3 356654443 3566664 889999999999988 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ ++.+..|+..+.... ..++|+++|+||+|+...+... +....+.+..
T Consensus 80 v~D~~~~~s-~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~------------------- 136 (191)
T cd04112 80 LYDITNKAS-FDNIRAWLTEIKEYA---QEDVVIMLLGNKADMSGERVVKREDGERLAKEY------------------- 136 (191)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhC---CCCCcEEEEEEcccchhccccCHHHHHHHHHHc-------------------
Confidence 999998654 888888777765432 1248999999999997543321 1122222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++|+| +++++++|.+
T Consensus 137 -------------------~~~~~e~Sa~~~~~---v~~l~~~l~~ 160 (191)
T cd04112 137 -------------------GVPFMETSAKTGLN---VELAFTAVAK 160 (191)
T ss_pred -------------------CCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999975
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=172.95 Aligned_cols=153 Identities=22% Similarity=0.266 Sum_probs=115.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|.++.+...+ ++.+.... .+.+++. .+.+||+||++.+.. .+..+++++|++++|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS-VTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH-hHHHHhcCCCEEEEE
Confidence 58999999999999999999998875544 45544333 3455554 788999999999988 688889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ +..+..|+..+... ..+++|+++|+||+|+...... .+....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 135 (161)
T cd04113 80 YDITNRTS-FEALPTWLSDARAL---ASPNIVVILVGNKSDLADQREVTFLEASRFAQEN-------------------- 135 (161)
T ss_pred EECCCHHH-HHHHHHHHHHHHHh---CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHc--------------------
Confidence 99999665 77888887766432 2245999999999999764332 11111122111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++||++|+| ++++++|+.+
T Consensus 136 ------------------~~~~~~~Sa~~~~~---i~~~~~~~~~ 159 (161)
T cd04113 136 ------------------GLLFLETSALTGEN---VEEAFLKCAR 159 (161)
T ss_pred ------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999864
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=174.20 Aligned_cols=156 Identities=15% Similarity=0.237 Sum_probs=117.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||+++++.+.+...+ ++.+... ..+.+++. .+.+||+||++.++..++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999998876544 5555433 34566664 889999999998875468888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....|+..+...... .++|+++|+||+|+...+... .....+.+.
T Consensus 82 v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------------------- 138 (170)
T cd04115 82 VYDVTNMAS-FHSLPSWIEECEQHSLP--NEVPRILVGNKCDLREQIQVPTDLAQRFADA-------------------- 138 (170)
T ss_pred EEECCCHHH-HHhHHHHHHHHHHhcCC--CCCCEEEEEECccchhhcCCCHHHHHHHHHH--------------------
Confidence 999998665 88888877776654322 349999999999997665432 222222211
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeec---CCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLD---SASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~t---g~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++ ++| +++++.++.+
T Consensus 139 ------------------~~~~~~e~Sa~~~~~~~~---i~~~f~~l~~ 166 (170)
T cd04115 139 ------------------HSMPLFETSAKDPSENDH---VEAIFMTLAH 166 (170)
T ss_pred ------------------cCCcEEEEeccCCcCCCC---HHHHHHHHHH
Confidence 126789999999 667 9999988763
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=170.87 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=117.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
++||+++|++|||||||+++++++.+.. ..++.+... ..+.+++. .+.+||+||++.+.. .+..+++++|++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS-LAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH-HHHHHhccCCEEEE
Confidence 4799999999999999999999998866 446666433 34556554 789999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++++ +.....|+..+..... ..+|+++++||+|+....... +....+....
T Consensus 80 v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~------------------- 136 (163)
T cd01860 80 VYDITSEES-FEKAKSWVKELQRNAS---PNIIIALVGNKADLESKRQVSTEEAQEYADEN------------------- 136 (163)
T ss_pred EEECcCHHH-HHHHHHHHHHHHHhCC---CCCeEEEEEECccccccCcCCHHHHHHHHHHc-------------------
Confidence 999998665 8888888777765432 349999999999997543211 1111111111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.++++||++|.| +++++++|.+
T Consensus 137 -------------------~~~~~~~Sa~~~~~---v~~l~~~l~~ 160 (163)
T cd01860 137 -------------------GLLFFETSAKTGEN---VNELFTEIAK 160 (163)
T ss_pred -------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=170.62 Aligned_cols=153 Identities=19% Similarity=0.282 Sum_probs=117.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.||+++|++|||||||++++.+..+... .++.+... ..+.+++. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhccCCEEEEE
Confidence 4899999999999999999999887544 35555443 34556654 689999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ +.....|+..+..... .+.|+++++||+|+...... .+....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~~~~~~~---~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 135 (161)
T cd01861 80 YDITNRQS-FDNTDKWIDDVRDERG---NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL-------------------- 135 (161)
T ss_pred EECcCHHH-HHHHHHHHHHHHHhCC---CCCEEEEEEEChhccccCccCHHHHHHHHHHh--------------------
Confidence 99998665 8888888887765422 24999999999999644332 22222222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.++++||++|+| ++++++||.+
T Consensus 136 ------------------~~~~~~~Sa~~~~~---v~~l~~~i~~ 159 (161)
T cd01861 136 ------------------NAMFIETSAKAGHN---VKELFRKIAS 159 (161)
T ss_pred ------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999975
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=178.69 Aligned_cols=146 Identities=16% Similarity=0.262 Sum_probs=113.0
Q ss_pred EcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 17 SGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 17 ~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+|.+|||||||+++++.+.+...+ ||++..... +.+++. .+.+|||+|++.+.. ++..++++++++|+|||+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~-l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG-LRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh-hhHHHhcCCCEEEEEEECCC
Confidence 599999999999999998887654 777766554 344444 899999999999998 78899999999999999999
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
..+ +..+..|+..+.+.. .++|+++|+||+|+.......+.. .+.+
T Consensus 80 ~~S-~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~~~~-~~~~---------------------------- 125 (200)
T smart00176 80 RVT-YKNVPNWHRDLVRVC----ENIPIVLCGNKVDVKDRKVKAKSI-TFHR---------------------------- 125 (200)
T ss_pred hHH-HHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCHHHH-HHHH----------------------------
Confidence 655 888888777776532 249999999999996432211111 1111
Q ss_pred CCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| |+++|+||.+
T Consensus 126 ----------~~~~~~~e~SAk~~~~---v~~~F~~l~~ 151 (200)
T smart00176 126 ----------KKNLQYYDISAKSNYN---FEKPFLWLAR 151 (200)
T ss_pred ----------HcCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 1127889999999999 9999999974
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=172.60 Aligned_cols=150 Identities=13% Similarity=0.139 Sum_probs=111.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccc-eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLK-ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~-~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+||+++|++|||||||+.++..+.+...+++++ .....+.+++. .+.+|||+|++.. .+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~------~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA------QFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch------hHHhcCCEEEEEEE
Confidence 489999999999999999999988876664433 33345777775 6899999999642 24577999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC--CCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA--KSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
++++.+ ++.+..|+..+....... ++|+++|+||.|+... +.... ....+.+.
T Consensus 75 ~~~~~s-f~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~--------------------- 130 (158)
T cd04103 75 LENEAS-FQTVYNLYHQLSSYRNIS--EIPLILVGTQDAISESNPRVIDDARARQLCAD--------------------- 130 (158)
T ss_pred CCCHHH-HHHHHHHHHHHHHhcCCC--CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH---------------------
Confidence 999665 888888888877653333 3899999999998532 22111 11111111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.|++|||++|+| |+++++++.+
T Consensus 131 ----------------~~~~~~~e~SAk~~~~---i~~~f~~~~~ 156 (158)
T cd04103 131 ----------------MKRCSYYETCATYGLN---VERVFQEAAQ 156 (158)
T ss_pred ----------------hCCCcEEEEecCCCCC---HHHHHHHHHh
Confidence 1126889999999999 9999998874
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=171.12 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=111.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|.+|||||||++++..+.+.+.+ ++.+.... ...+++. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT-MHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh-hhHHHhCCCCEEEEE
Confidence 58999999999999999999998886554 44443332 2344544 788999999999998 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....|+..+.+.. +++|+++|+||+|+.... ......+.+
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~----~~~p~ivv~nK~Dl~~~~--~~~~~~~~~----------------------- 129 (161)
T cd04124 80 FDVTRKIT-YKNLSKWYEELREYR----PEIPCIVVANKIDLDPSV--TQKKFNFAE----------------------- 129 (161)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhC----CCCcEEEEEECccCchhH--HHHHHHHHH-----------------------
Confidence 99998654 777777776665421 248999999999984321 110001110
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|.| ++++++.+.+
T Consensus 130 ---------------~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 155 (161)
T cd04124 130 ---------------KHNLPLYYVSAADGTN---VVKLFQDAIK 155 (161)
T ss_pred ---------------HcCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 0115789999999999 9999998864
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=176.16 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=112.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEec-Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYE-KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~-~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|.++.+...+ ||++..+. .+... +. .+.+|||||++.+.. ++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR-LRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH-HHHHhCCCCCEEEEE
Confidence 58999999999999999999999887655 55554433 34444 33 789999999999988 788889999999999
Q ss_pred EeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-----HHHHHHHHHHHHHHhhhcccccccch
Q psy1914 87 LDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-----SVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
+|++++.+ ++.+.. |+..+... .+++|+++|+||+|+...... ......+....+
T Consensus 80 ~d~~~~~s-~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-------------- 140 (187)
T cd04132 80 YAVDNPTS-LDNVEDKWFPEVNHF----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG-------------- 140 (187)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHh----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC--------------
Confidence 99999655 777765 44444322 134899999999999654311 111111211111
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| ++++++++.+
T Consensus 141 -----------------------~~~~~e~Sa~~~~~---v~~~f~~l~~ 164 (187)
T cd04132 141 -----------------------AFAYLECSAKTMEN---VEEVFDTAIE 164 (187)
T ss_pred -----------------------CcEEEEccCCCCCC---HHHHHHHHHH
Confidence 02789999999999 9999998864
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=171.88 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=116.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
-+||+++|++|||||||++++.++.+...+ ++.+.... .+..++. .+.+||+||++.+.. +...+++.+|++++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~il~ 82 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS-ITRSYYRGAAGALL 82 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhccCCEEEE
Confidence 379999999999999999999998876554 45554433 3455553 789999999999888 67888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +..+..|+..+.... .+++|+++|+||+|+....... +....+...
T Consensus 83 v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-------------------- 138 (168)
T cd01866 83 VYDITRRET-FNHLTSWLEDARQHS---NSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-------------------- 138 (168)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHHHHH--------------------
Confidence 999998655 888888887776532 1349999999999997543321 111111111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|+| ++++++++.+
T Consensus 139 ------------------~~~~~~e~Sa~~~~~---i~~~~~~~~~ 163 (168)
T cd01866 139 ------------------HGLIFMETSAKTASN---VEEAFINTAK 163 (168)
T ss_pred ------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999865
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=182.86 Aligned_cols=158 Identities=11% Similarity=0.269 Sum_probs=117.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce-eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE-NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~-~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|.+|||||||+++++++.+...+ ||++. ....+++++. .+.+|||+|++.+.. ++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~-~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA-MRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH-HHHHHhccCCEEEEEE
Confidence 58999999999999999999998887665 55542 3344667665 788999999999887 6777888999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCc------CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQV------QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
|+++..+ ++.+..|+..+...... ...++|+++|+||+|+...+... .+.+.+.+..
T Consensus 80 dv~~~~S-f~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~--~~ei~~~~~~-------------- 142 (247)
T cd04143 80 SLDNRES-FEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ--RDEVEQLVGG-------------- 142 (247)
T ss_pred eCCCHHH-HHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC--HHHHHHHHHh--------------
Confidence 9999654 88888887777643211 12349999999999997533221 1122221110
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| +++++++|.+
T Consensus 143 --------------------~~~~~~~evSAktg~g---I~elf~~L~~ 168 (247)
T cd04143 143 --------------------DENCAYFEVSAKKNSN---LDEMFRALFS 168 (247)
T ss_pred --------------------cCCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 1126789999999999 9999999875
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-28 Score=171.40 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=128.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
+++.-+||+++|++|+|||||+|++...+|...+ .|++.. ...+.++++ .+.+|||+|+++|.+ +...+++++|
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqs-Lg~aFYRgaD 83 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQS-LGVAFYRGAD 83 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhh-cccceecCCc
Confidence 4466789999999999999999999999997776 566654 445677776 899999999999999 7788999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCC-CCCcEEEEEeCCCccCCC--CHHH-HHHHHHHHHHHHhhhcccccc
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQS-SRVNILVCCNKQDQTLAK--SSSV-VKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~--~~~~-~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.++|+|+.++.+ ++....|-.+++.+....+ ...|++|+|||+|+.+.. .+.. ..+..-
T Consensus 84 cCvlvydv~~~~S-fe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC--------------- 147 (210)
T KOG0394|consen 84 CCVLVYDVNNPKS-FENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWC--------------- 147 (210)
T ss_pred eEEEEeecCChhh-hccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHH---------------
Confidence 9999999999766 9899999888887655443 368999999999997632 2221 111111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++ -.+++++++|||.+.| +++.|+-+.+
T Consensus 148 ------------~s----------~gnipyfEtSAK~~~N---V~~AFe~ia~ 175 (210)
T KOG0394|consen 148 ------------KS----------KGNIPYFETSAKEATN---VDEAFEEIAR 175 (210)
T ss_pred ------------Hh----------cCCceeEEeccccccc---HHHHHHHHHH
Confidence 11 2348999999999999 9999887653
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=169.26 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=116.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|.++.+.. ..|+.+... ..+.+++. .+.+||+||++.+.. .+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT-LTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh-hhHHHhCCCCEEEEE
Confidence 589999999999999999999988754 345555443 33455553 789999999998887 678889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....|+..+...... .+.|+++|+||+|+.......+....+....
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~--------------------- 135 (161)
T cd01863 80 YDVTRRDT-FTNLETWLNELETYSTN--NDIVKMLVGNKIDKENREVTREEGLKFARKH--------------------- 135 (161)
T ss_pred EECCCHHH-HHhHHHHHHHHHHhCCC--CCCcEEEEEECCcccccccCHHHHHHHHHHc---------------------
Confidence 99998665 77777777766554322 3499999999999974432222222222111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++++.+
T Consensus 136 -----------------~~~~~~~Sa~~~~g---i~~~~~~~~~ 159 (161)
T cd01863 136 -----------------NMLFIETSAKTRDG---VQQAFEELVE 159 (161)
T ss_pred -----------------CCEEEEEecCCCCC---HHHHHHHHHH
Confidence 26789999999999 9999998864
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=170.22 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=113.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--cccccc-cccceeeE--EEEec-C--ceEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS--KYFESC-TSLKENVG--NFTYE-K--KNIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~--~~~~~~-~t~~~~~~--~~~~~-~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
+||+++|++|||||||++++..+ .+...+ +|++.... .+.+. + ..+.+|||||++.+.. ++..+++++|++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~i 79 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD-MVSNYWESPSVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH-HHHHHhCCCCEE
Confidence 58999999999999999999864 455555 56665543 24443 2 2899999999999888 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH-HHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK-TLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... .++|+++|+||+|+.+..+..... ..+...
T Consensus 80 i~v~d~~~~~s-~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------------------ 136 (164)
T cd04101 80 ILVYDVSNKAS-FENCSRWVNKVRTAS----KHMPGVLVGNKMDLADKAEVTDAQAQAFAQA------------------ 136 (164)
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCCHHHHHHHHHH------------------
Confidence 99999998655 777777776665432 338999999999997654332211 112111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|.| +++++++|.+
T Consensus 137 --------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 161 (164)
T cd04101 137 --------------------NQLKFFKTSALRGVG---YEEPFESLAR 161 (164)
T ss_pred --------------------cCCeEEEEeCCCCCC---hHHHHHHHHH
Confidence 115789999999999 9999999875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=172.06 Aligned_cols=156 Identities=19% Similarity=0.299 Sum_probs=116.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++.++.+...+ ||++... ..+.+++. .+.+|||||++.+.. ++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA-MRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh-hhHHHHhhCCEEEEE
Confidence 478999999999999999999998886655 4544332 33556554 788999999999998 799999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ ++....|...+..... ..++|+++++||+|+...+.... ....+.+..
T Consensus 80 ~~~~~~~s-~~~~~~~~~~i~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 136 (168)
T cd04177 80 YSVTSEAS-LNELGELREQVLRIKD--SDNVPMVLVGNKADLEDDRQVSREDGVSLSQQW-------------------- 136 (168)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhhC--CCCCCEEEEEEChhccccCccCHHHHHHHHHHc--------------------
Confidence 99998664 7777777666654322 23499999999999976543221 111111100
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|.| ++++++||.+
T Consensus 137 -----------------~~~~~~~~SA~~~~~---i~~~f~~i~~ 161 (168)
T cd04177 137 -----------------GNVPFYETSARKRTN---VDEVFIDLVR 161 (168)
T ss_pred -----------------CCceEEEeeCCCCCC---HHHHHHHHHH
Confidence 116789999999999 9999999874
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=173.71 Aligned_cols=153 Identities=22% Similarity=0.286 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++.+...+ +|.+... ..+.+++. .+.+||+||++.+.. .+..+++++|++++|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS-LNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh-hHHHHccCCCEEEEE
Confidence 58999999999999999999999887644 6666443 34566554 778999999999988 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
||++++.+ +..+..|+..+.... ...+|+++|+||+|+.+..... .....+.+..
T Consensus 80 ~d~~~~~s-~~~i~~~~~~i~~~~---~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~-------------------- 135 (188)
T cd04125 80 YDVTDQES-FENLKFWINEINRYA---RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSL-------------------- 135 (188)
T ss_pred EECcCHHH-HHHHHHHHHHHHHhC---CCCCeEEEEEECCCCcccccCCHHHHHHHHHHc--------------------
Confidence 99999665 888888777765421 2338999999999997554322 1112222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|.| +++++++|.+
T Consensus 136 ------------------~~~~~evSa~~~~~---i~~~f~~l~~ 159 (188)
T cd04125 136 ------------------NIPFFETSAKQSIN---VEEAFILLVK 159 (188)
T ss_pred ------------------CCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999865
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=177.53 Aligned_cols=155 Identities=22% Similarity=0.300 Sum_probs=120.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|.++.+...+ +|++.+. ..+.+++. .+.+|||||++.+.. ++..+++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~~~~i 89 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGAL 89 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhCCCCEEE
Confidence 4589999999999999999999998876444 6776654 34566664 889999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ ++.+..|+..+.... ..++|+++|+||+|+.+.+... +....+...
T Consensus 90 lv~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~------------------- 146 (216)
T PLN03110 90 LVYDITKRQT-FDNVQRWLRELRDHA---DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK------------------- 146 (216)
T ss_pred EEEECCChHH-HHHHHHHHHHHHHhC---CCCCeEEEEEEChhcccccCCCHHHHHHHHHH-------------------
Confidence 9999998654 888888877765432 2349999999999997655432 222222211
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++++++|.+
T Consensus 147 -------------------~~~~~~e~SA~~g~~---v~~lf~~l~~ 171 (216)
T PLN03110 147 -------------------EGLSFLETSALEATN---VEKAFQTILL 171 (216)
T ss_pred -------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 126899999999999 9999999864
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=176.48 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=111.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhh----h---hHHHhhhc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRN----K---FFDQYKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~----~---~~~~~~~~ 79 (211)
+||+++|.+|||||||++++.++.+...+ ||++... ..+.+++. .+.+|||||...+.. + ....++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998886655 6665433 34566775 788999999754311 0 12234678
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
+|++++|||++++.+ ++.+..|+..+.........++|+++|+||+|+...+.... ....+.++
T Consensus 81 ad~iilv~D~~~~~S-~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~-------------- 145 (198)
T cd04142 81 SRAFILVYDICSPDS-FHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK-------------- 145 (198)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH--------------
Confidence 999999999999665 88888877777654321224499999999999965432211 11111100
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++++|||++|.| ++++++.+.+
T Consensus 146 -----------------------~~~~~~~e~Sak~g~~---v~~lf~~i~~ 171 (198)
T cd04142 146 -----------------------SWKCGYLECSAKYNWH---ILLLFKELLI 171 (198)
T ss_pred -----------------------hcCCcEEEecCCCCCC---HHHHHHHHHH
Confidence 1227889999999999 9999987753
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=175.99 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=118.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+..+||+++|++|||||||+++|.++.+....|+.+... ..+.+++. .+.+|||||++.+.. ++..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT-LTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHHhcCCEEE
Confidence 456899999999999999999999988766557766544 34556554 789999999999988 7889999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++++ +.....+|...+.... ...+.|+++|+||+|+....... +....+...
T Consensus 91 lv~D~~~~~s-f~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~------------------- 149 (211)
T PLN03118 91 LVYDVTRRET-FTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVSREEGMALAKE------------------- 149 (211)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCHHHHHHHHHH-------------------
Confidence 9999999665 7777776655543211 11238999999999997654432 111111111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+++|||++|+| +++++++|.+
T Consensus 150 -------------------~~~~~~e~SAk~~~~---v~~l~~~l~~ 174 (211)
T PLN03118 150 -------------------HGCLFLECSAKTREN---VEQCFEELAL 174 (211)
T ss_pred -------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=165.85 Aligned_cols=155 Identities=19% Similarity=0.232 Sum_probs=121.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccc-cc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTS-LK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t-~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.-+||+++|.+|+|||||+-++....|.+..|+ +| +.+..+.+++. ++.+|||+|+++|+. +.+.||+++.++|
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt-LTpSyyRgaqGiI 88 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT-LTPSYYRGAQGII 88 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc-cCHhHhccCceeE
Confidence 458999999999999999999999999777765 55 45566788877 889999999999999 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++..++ +.....|+.++-.... ++++..++|+||+|....+.+.. .--.+.++.+
T Consensus 89 lVYDVT~Rdt-f~kLd~W~~Eld~Yst--n~diikmlVgNKiDkes~R~V~reEG~kfAr~h~----------------- 148 (209)
T KOG0080|consen 89 LVYDVTSRDT-FVKLDIWLKELDLYST--NPDIIKMLVGNKIDKESERVVDREEGLKFARKHR----------------- 148 (209)
T ss_pred EEEEccchhh-HHhHHHHHHHHHhhcC--CccHhHhhhcccccchhcccccHHHHHHHHHhhC-----------------
Confidence 9999998665 8788778777754433 34488999999999875443321 1112333333
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.-|++|||||.+| +...|+-+.
T Consensus 149 ---------------------~LFiE~SAkt~~~---V~~~Feelv 170 (209)
T KOG0080|consen 149 ---------------------CLFIECSAKTREN---VQCCFEELV 170 (209)
T ss_pred ---------------------cEEEEcchhhhcc---HHHHHHHHH
Confidence 7789999999999 987776554
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=168.06 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=115.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|||||||+++++...+...+ ++++..... ..+++. .+.+||+||+..+.. ++..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA-IRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH-HHHHHhhcCCEEEEEE
Confidence 58999999999999999999998876555 444433332 455544 789999999999888 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+ +.....|+..+...... .++|+++|+||+|+..... .......+.+.+
T Consensus 80 d~~~~~s-~~~~~~~~~~~~~~~~~--~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~--------------------- 135 (164)
T cd04139 80 SITDMES-FTATAEFREQILRVKDD--DNVPLLLVGNKCDLEDKRQVSSEEAANLARQW--------------------- 135 (164)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEEccccccccccCHHHHHHHHHHh---------------------
Confidence 9988654 77788887777754322 3499999999999976322 111112222111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++|+| +++++++|.+
T Consensus 136 -----------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 159 (164)
T cd04139 136 -----------------GVPYVETSAKTRQN---VEKAFYDLVR 159 (164)
T ss_pred -----------------CCeEEEeeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999864
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=172.83 Aligned_cols=155 Identities=16% Similarity=0.178 Sum_probs=114.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc--cccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFE--SCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|++|||||||+++|+++.+.. ..+|++..+ ..+.+++. .+.+||+||++.+.. ++..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA-MSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh-hhHhhcCCCCEEEE
Confidence 589999999999999999999988864 346666544 34666665 677999999998887 68888889999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHH-HHHHHHHHHHHhhhcccccccchhhc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVV-KTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
|+|++++.+ ++....|+..+.... .++|+++|+||+|+..... ...+ ...+.+...
T Consensus 80 v~d~~~~~s-~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~----------------- 137 (193)
T cd04118 80 CYDLTDSSS-FERAKFWVKELQNLE----EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD----------------- 137 (193)
T ss_pred EEECCCHHH-HHHHHHHHHHHHhcC----CCCCEEEEEEcccccccccccCccCHHHHHHHHH-----------------
Confidence 999998655 777777776665421 2489999999999864321 1000 011111000
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++++++|.+
T Consensus 138 ------------------~~~~~~~~~Sa~~~~g---v~~l~~~i~~ 163 (193)
T cd04118 138 ------------------EIKAQHFETSSKTGQN---VDELFQKVAE 163 (193)
T ss_pred ------------------HcCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 0115779999999999 9999999875
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=168.39 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=114.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++.+.... +|.+... ..+.+++. .+.+||+||++.+.. ++..+++++|++|++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS-LGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh-HHHHHhcCCCEEEEE
Confidence 58999999999999999999998875444 4555433 34556655 678999999999888 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcC-CCCCcEEEEEeCCCccCCCC--HHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQ-SSRVNILVCCNKQDQTLAKS--SSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|++++++ +.....|...++...... ..++|+++|+||+|+..... ......... .
T Consensus 80 ~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~------------------- 138 (172)
T cd01862 80 YDVTNPKS-FESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-S------------------- 138 (172)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-H-------------------
Confidence 99998654 677766666554432111 22499999999999974322 222221111 1
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++++++|.+
T Consensus 139 ------------------~~~~~~~~~Sa~~~~g---v~~l~~~i~~ 164 (172)
T cd01862 139 ------------------NGNIPYFETSAKEAIN---VEQAFETIAR 164 (172)
T ss_pred ------------------cCCceEEEEECCCCCC---HHHHHHHHHH
Confidence 1126789999999999 9999999875
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-27 Score=172.05 Aligned_cols=164 Identities=14% Similarity=0.167 Sum_probs=110.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
|+++|++|||||||++++.++.+...+ |+...... .+.+++. .+.+|||||++.+.. ++..+++++|++++|+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR-LRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch-hchhhcCCCCEEEEEEEC
Confidence 589999999999999999999886655 45444333 3555655 689999999999887 788889999999999999
Q ss_pred CCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 90 STVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+++++ ++.... |+..+... . +++|+++|+||+|+........ .+.+ .+....+ .. +...+
T Consensus 80 ~~~~s-~~~~~~~~~~~i~~~--~--~~~piilv~nK~Dl~~~~~~~~---~~~~----~~~~~v~------~~-~~~~~ 140 (174)
T smart00174 80 DSPAS-FENVKEKWYPEVKHF--C--PNTPIILVGTKLDLREDKSTLR---ELSK----QKQEPVT------YE-QGEAL 140 (174)
T ss_pred CCHHH-HHHHHHHHHHHHHhh--C--CCCCEEEEecChhhhhChhhhh---hhhc----ccCCCcc------HH-HHHHH
Confidence 98655 777764 55544432 1 3499999999999975332110 0000 0000000 00 00000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+. ..+...+++|||++|+| ++++++.|.+
T Consensus 141 ~~----------~~~~~~~~e~Sa~~~~~---v~~lf~~l~~ 169 (174)
T smart00174 141 AK----------RIGAVKYLECSALTQEG---VREVFEEAIR 169 (174)
T ss_pred HH----------HcCCcEEEEecCCCCCC---HHHHHHHHHH
Confidence 00 01114789999999999 9999998864
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=166.93 Aligned_cols=153 Identities=20% Similarity=0.296 Sum_probs=116.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.+..+.... ++.+... ..+.+++. .+.+||+||+..+.. .+..+++.+|++++|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS-ITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHhCCCCEEEEE
Confidence 58999999999999999999988875444 5555433 34566654 788999999998887 688889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ ++.+..|+..+..... .++|+++|+||+|+...... .+....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~l~~~~~~~~---~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 135 (164)
T smart00175 80 YDITNRES-FENLKNWLKELREYAD---PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH-------------------- 135 (164)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhCC---CCCeEEEEEEchhcccccCCCHHHHHHHHHHc--------------------
Confidence 99999665 7777777777665422 34999999999998764322 11121121111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| +++++++|.+
T Consensus 136 ------------------~~~~~e~Sa~~~~~---i~~l~~~i~~ 159 (164)
T smart00175 136 ------------------GLPFFETSAKTNTN---VEEAFEELAR 159 (164)
T ss_pred ------------------CCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 15689999999999 9999999875
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=168.12 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=111.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+||+++|.+|||||||+++|..+.+...++++..... ...+.+. .+.+|||||++.+.. .+..++..+|++++|+|
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRA-NLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhH-HHhhhcccCCEEEEEEE
Confidence 4899999999999999999999988766665433322 2334333 889999999988777 56777889999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ ++.+..+|...+.... .++|+++|+||+|+.+........+.+.......
T Consensus 80 ~~~~~s-~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------------------- 135 (166)
T cd01893 80 VDRPST-LERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF-------------------- 135 (166)
T ss_pred CCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHH--------------------
Confidence 998665 7776655554443221 2499999999999976654321111111111100
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++|||++|.| ++++++.+.+
T Consensus 136 -------------~~~~~~~e~Sa~~~~~---v~~lf~~~~~ 161 (166)
T cd01893 136 -------------REIETCVECSAKTLIN---VSEVFYYAQK 161 (166)
T ss_pred -------------hcccEEEEeccccccC---HHHHHHHHHH
Confidence 0003689999999999 9999988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=162.48 Aligned_cols=166 Identities=22% Similarity=0.380 Sum_probs=142.3
Q ss_pred eccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc-eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 4 FKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 4 ~~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
|+.+.++++||+++|..++||||+++.|...+.....||.|++...+.+++. ++++||.+|+...++ +|..||.+.|+
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRp-yWsNYyenvd~ 88 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRP-YWSNYYENVDG 88 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccch-hhhhhhhccce
Confidence 4567789999999999999999999999999998889999999999999996 999999999999999 89999999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
+|||+|+.| +..++++.+.+..++....... +|+++..||.|+..+...+++...+. +. .+.
T Consensus 89 lIyVIDS~D-~krfeE~~~el~ELleeeKl~~--vpvlIfankQdlltaa~~eeia~kln--l~-----------~lr-- 150 (185)
T KOG0074|consen 89 LIYVIDSTD-EKRFEEISEELVELLEEEKLAE--VPVLIFANKQDLLTAAKVEEIALKLN--LA-----------GLR-- 150 (185)
T ss_pred EEEEEeCCc-hHhHHHHHHHHHHHhhhhhhhc--cceeehhhhhHHHhhcchHHHHHhcc--hh-----------hhh--
Confidence 999999888 4558899888888888766767 99999999999998887776554432 10 000
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++-+|||.+++| +..-.+|+..
T Consensus 151 -------------------dRswhIq~csals~eg---~~dg~~wv~s 176 (185)
T KOG0074|consen 151 -------------------DRSWHIQECSALSLEG---STDGSDWVQS 176 (185)
T ss_pred -------------------hceEEeeeCccccccC---ccCcchhhhc
Confidence 2348889999999999 8888888764
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=173.58 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=117.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|+...+...+ +|++... ..+.+++. .+.+|||+|++.+.. .+..+++.+|+++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-~~~~~~~~ad~~v 83 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-ITRSYYRGAAGAL 83 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHhccCCEEE
Confidence 4589999999999999999999998876544 5665543 34566664 688999999999988 6888889999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+.... ....|+++|+||+|+.+.+... +..+.+.+..
T Consensus 84 lv~D~~~~~s-~~~l~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~------------------ 141 (210)
T PLN03108 84 LVYDITRRET-FNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH------------------ 141 (210)
T ss_pred EEEECCcHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECccCccccCCCHHHHHHHHHHc------------------
Confidence 9999999665 777777777665432 2348999999999997654322 1112222111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++|+.+
T Consensus 142 --------------------~~~~~e~Sa~~~~~---v~e~f~~l~~ 165 (210)
T PLN03108 142 --------------------GLIFMEASAKTAQN---VEEAFIKTAA 165 (210)
T ss_pred --------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999998864
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=170.28 Aligned_cols=168 Identities=14% Similarity=0.222 Sum_probs=112.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+.||+++|++|||||||++++.++.+...+ ||++... ..+.+++. .+.+|||||++.+.. ++..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-LRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh-ccccccCCCCEEEEE
Confidence 368999999999999999999998887655 5555443 34566655 789999999998887 677778889999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++.++ +......|...+... . .++|+++|+||+|+.+...... .+.. .. ..... ... ..
T Consensus 80 ~~~~~~~s-~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~~~~~~~---~i~~-~~---~~~v~----~~~---~~ 141 (175)
T cd01870 80 FSIDSPDS-LENIPEKWTPEVKHF-C--PNVPIILVGNKKDLRNDEHTRR---ELAK-MK---QEPVK----PEE---GR 141 (175)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhh-C--CCCCEEEEeeChhcccChhhhh---hhhh-cc---CCCcc----HHH---HH
Confidence 99998654 666655444333321 1 2489999999999975432211 1100 00 00000 000 00
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. +.......++++|||++|.| +++++++|.+
T Consensus 142 ~----------~~~~~~~~~~~~~Sa~~~~~---v~~lf~~l~~ 172 (175)
T cd01870 142 D----------MANKIGAFGYMECSAKTKEG---VREVFEMATR 172 (175)
T ss_pred H----------HHHHcCCcEEEEeccccCcC---HHHHHHHHHH
Confidence 0 00001125789999999999 9999999975
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=164.30 Aligned_cols=152 Identities=23% Similarity=0.317 Sum_probs=116.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeEEE--EecC--ceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVGNF--TYEK--KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~~~--~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|+++||||||++++.+..+... .+|.+...... ..++ ..+.+||+||+..+.. .+..+++++|++++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS-ITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH-HHHHHhcCCCEEEEE
Confidence 5899999999999999999999888765 46666655543 4333 3889999999999888 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC--CHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK--SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|++++++ +..+..|+..+..... ...|+++++||+|+.... ..++..+ +...
T Consensus 80 ~d~~~~~~-~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~-------------------- 134 (159)
T cd00154 80 YDITNRES-FENLDKWLKELKEYAP---ENIPIILVGNKIDLEDQRQVSTEEAQQ-FAKE-------------------- 134 (159)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhCC---CCCcEEEEEEcccccccccccHHHHHH-HHHH--------------------
Confidence 99998554 7788887777665431 348999999999996222 2222221 2111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| ++++++||.+
T Consensus 135 ------------------~~~~~~~~sa~~~~~---i~~~~~~i~~ 159 (159)
T cd00154 135 ------------------NGLLFFETSAKTGEN---VEELFQSLAE 159 (159)
T ss_pred ------------------cCCeEEEEecCCCCC---HHHHHHHHhC
Confidence 126889999999999 9999999864
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=169.20 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=88.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|+|||||++++.++.+...+++++... ..+.+++. .+.+|||||++.+.. ++..+++++|++++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK-LRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc-ccccccCCCcEEEEEE
Confidence 589999999999999999999988877665443322 23556654 788999999999888 6888889999999999
Q ss_pred eCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 88 DSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 88 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
|++++.+ ++.... |+..+... . +++|+++|+||+|+...
T Consensus 80 d~~~~~s-f~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 80 SVVNPSS-FQNISEKWIPEIRKH--N--PKAPIILVGTQADLRTD 119 (173)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhh--C--CCCCEEEEeeChhhccC
Confidence 9999665 777654 44444321 1 24899999999999643
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=164.58 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=113.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|+|||||++++..+.+.... ++++... ..+.+.+. .+.+||+||++.+.. ++..+++++|++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-LGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-hhHHHhccCCEEEEE
Confidence 58999999999999999999998875544 3443332 33444444 789999999998888 688888999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ +.....|+..+..... .++|+++|+||+|+....... .....+.+..
T Consensus 80 ~d~~~~~s-~~~~~~~~~~i~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 135 (162)
T cd04123 80 YDITDADS-FQKVKKWIKELKQMRG---NNISLVIVGNKIDLERQRVVSKSEAEEYAKSV-------------------- 135 (162)
T ss_pred EECCCHHH-HHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCCCHHHHHHHHHHc--------------------
Confidence 99998664 7777777666654321 248999999999998554321 1111121111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++|||++|+| ++++++||.+
T Consensus 136 ------------------~~~~~~~s~~~~~g---i~~~~~~l~~ 159 (162)
T cd04123 136 ------------------GAKHFETSAKTGKG---IEELFLSLAK 159 (162)
T ss_pred ------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 15678999999999 9999999865
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=170.40 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=114.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
++-+||+++|.+|||||||++++.++.+. ..+ ||++... ..+.+++. .+.+||++|++.+.. ++..+++++|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-LNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-cchhhhhcCCE
Confidence 45689999999999999999999999886 555 6666543 34666664 788999999998887 67888899999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ ++.+..|+..+... .++|+++|+||+|+.+..... ...+.+.+.++
T Consensus 81 ~llv~d~~~~~s-~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--------------- 139 (169)
T cd01892 81 ACLVYDSSDPKS-FSYCAEVYKKYFML-----GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG--------------- 139 (169)
T ss_pred EEEEEeCCCHHH-HHHHHHHHHHhccC-----CCCeEEEEEEcccccccccccccCHHHHHHHcC---------------
Confidence 999999998654 77776666544221 249999999999996543211 11112221111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ..++++||++|+| ++++++.|.+
T Consensus 140 ---------------------~-~~~~~~Sa~~~~~---v~~lf~~l~~ 163 (169)
T cd01892 140 ---------------------L-PPPLHFSSKLGDS---SNELFTKLAT 163 (169)
T ss_pred ---------------------C-CCCEEEEeccCcc---HHHHHHHHHH
Confidence 0 1347899999999 9999998875
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=160.46 Aligned_cols=150 Identities=20% Similarity=0.342 Sum_probs=122.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
-+|++++|+.|+|||+|+.++...++.... .|+|...+. +.+.++ ++++|||+|+++|+. ..+.|++++.+.++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRS-VtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRS-VTRSYYRGAAGALL 87 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHH-HHHHHhccccceEE
Confidence 368999999999999999999999986655 577766654 566666 899999999999999 79999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|+++.++ +.....|+.++.. ++.+++.+++++||.||.+.+++......- +.
T Consensus 88 VYD~Tsrds-fnaLtnWL~DaR~---lAs~nIvviL~GnKkDL~~~R~VtflEAs~---Fa------------------- 141 (214)
T KOG0086|consen 88 VYDITSRDS-FNALTNWLTDART---LASPNIVVILCGNKKDLDPEREVTFLEASR---FA------------------- 141 (214)
T ss_pred EEeccchhh-HHHHHHHHHHHHh---hCCCcEEEEEeCChhhcChhhhhhHHHHHh---hh-------------------
Confidence 999999665 9999999988765 455679999999999999888765433211 11
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
.++...+.++||+||++ ++|.+
T Consensus 142 ---------------qEnel~flETSa~TGeN---VEEaF 163 (214)
T KOG0086|consen 142 ---------------QENELMFLETSALTGEN---VEEAF 163 (214)
T ss_pred ---------------cccceeeeeeccccccc---HHHHH
Confidence 02337789999999999 99876
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=168.53 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhh-hhhhHHHhhhcCCEEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRL-RNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~-~~~~~~~~~~~~d~ii~v~ 87 (211)
||+++|++|||||||+++++.+.+...+ +++... ...+.+++. .+.+||+||+..+ .. ....+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE-QLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc-hHHHHHHhCCEEEEEE
Confidence 5899999999999999999988886665 343222 233556655 6889999999853 33 4667788999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+ ++.+..|+..+..... ...++|+++|+||+|+...+.... ....+.+..+
T Consensus 80 d~~~~~s-~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-------------------- 137 (165)
T cd04146 80 SITDRSS-FDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-------------------- 137 (165)
T ss_pred ECCCHHH-HHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC--------------------
Confidence 9999655 8777776655543211 123499999999999965433221 1111211111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecC-CCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDS-ASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg-~g~~~i~~l~~~i~~ 210 (211)
.++++|||++| .| +++++++|.+
T Consensus 138 ------------------~~~~e~Sa~~~~~~---v~~~f~~l~~ 161 (165)
T cd04146 138 ------------------CLFFEVSAAEDYDG---VHSVFHELCR 161 (165)
T ss_pred ------------------CEEEEeCCCCCchh---HHHHHHHHHH
Confidence 57899999999 59 9999999874
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=173.91 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=110.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccc-cccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhh-cCCEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF-ESC-TSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKS-SAKGIV 84 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~-~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~-~~d~ii 84 (211)
+||+++|++|||||||+++|..+.+. ..+ ++.+ .....+.+++. .+.+|||||++.+ ....++. ++|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW---TEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH---HHhHHhhcCCCEEE
Confidence 58999999999999999999988875 445 3432 33344566554 7999999999832 2344556 899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|||++++.+ +..+.+|+..+....... ++|+++|+||+|+.+.+..... ...+...
T Consensus 78 lV~d~td~~S-~~~~~~~~~~l~~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~a~~------------------- 135 (221)
T cd04148 78 VVYSVTDRSS-FERASELRIQLRRNRQLE--DRPIILVGNKSDLARSREVSVQEGRACAVV------------------- 135 (221)
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcCCC--CCCEEEEEEChhccccceecHHHHHHHHHH-------------------
Confidence 9999999665 888888777765543222 4999999999999765432211 1112111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++|||++|.| ++++++||.+
T Consensus 136 -------------------~~~~~~e~SA~~~~g---v~~l~~~l~~ 160 (221)
T cd04148 136 -------------------FDCKFIETSAGLQHN---VDELLEGIVR 160 (221)
T ss_pred -------------------cCCeEEEecCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=169.12 Aligned_cols=167 Identities=11% Similarity=0.120 Sum_probs=111.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|+|||||++++..+.+...+ ||..... ..+.+++. .+.+|||||+..+.. ++..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-LRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-cccccCCCCCEEEEEE
Confidence 58999999999999999999998886555 4443332 23556655 578999999999887 6788889999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ ++.....|...+... ..++|+++|+||+|+.+............ ....+. .. ...
T Consensus 80 ~~~~~~s-~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~-------~~~v~~----~~---~~~ 141 (174)
T cd04135 80 SVVNPAS-FQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDPKTLARLNDMK-------EKPVTV----EQ---GQK 141 (174)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcChhhHHHHhhcc-------CCCCCH----HH---HHH
Confidence 9999665 777765444444322 23499999999999965432211110000 000000 00 000
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++. . .....+++|||++|+| ++++++-+.+
T Consensus 142 ~~~---------~-~~~~~~~e~Sa~~~~g---i~~~f~~~~~ 171 (174)
T cd04135 142 LAK---------E-IGAHCYVECSALTQKG---LKTVFDEAIL 171 (174)
T ss_pred HHH---------H-cCCCEEEEecCCcCCC---HHHHHHHHHH
Confidence 000 0 1114689999999999 9999987754
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=164.62 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=115.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
+..++|+++|++|||||||++++..+.+... .+|++. ....+.+++. .+.+||+||++.+.. .+..++..+|++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~ 83 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS-ITQSYYRSANAL 83 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHhcCCCEE
Confidence 3458999999999999999999998776544 355553 3334666664 688999999999888 578889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|+++..+ +.....|+..+... ...++|+++|+||+|+.+.++.. .....+.+.
T Consensus 84 i~v~d~~~~~s-~~~~~~~~~~l~~~---~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~------------------ 141 (169)
T cd04114 84 ILTYDITCEES-FRCLPEWLREIEQY---ANNKVITILVGNKIDLAERREVSQQRAEEFSDA------------------ 141 (169)
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHh---CCCCCeEEEEEECcccccccccCHHHHHHHHHH------------------
Confidence 99999988554 66666666544321 12348999999999997654432 212222110
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++|||++|+| +++++++|.+
T Consensus 142 --------------------~~~~~~~~Sa~~~~g---v~~l~~~i~~ 166 (169)
T cd04114 142 --------------------QDMYYLETSAKESDN---VEKLFLDLAC 166 (169)
T ss_pred --------------------cCCeEEEeeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999875
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-27 Score=162.18 Aligned_cols=160 Identities=24% Similarity=0.422 Sum_probs=140.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.++.+++++|..|+|||+++.++--++...+.||++++...+++++.++++||++|+-++++ +|+-|+.+.|++|+|+|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirP-yWRcYy~dt~avIyVVD 94 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRP-YWRCYYADTDAVIYVVD 94 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccH-HHHHHhcccceEEEEEe
Confidence 37899999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHH-HHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQ-KELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
++|.++ +..+...+..+++.+.+++ ..+++++||.|...+....+....+. ..+.
T Consensus 95 ssd~dr-is~a~~el~~mL~E~eLq~--a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk--------------------- 150 (182)
T KOG0072|consen 95 SSDRDR-ISIAGVELYSMLQEEELQH--AKLLVFANKQDYSGALTRSEVLKMLGLQKLK--------------------- 150 (182)
T ss_pred ccchhh-hhhhHHHHHHHhccHhhcC--ceEEEEeccccchhhhhHHHHHHHhChHHHh---------------------
Confidence 999776 7888889999999988888 88999999999987766655444332 0111
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.+|+.||.+|+| +++.++||.+
T Consensus 151 --------------~r~~~Iv~tSA~kg~G---ld~~~DWL~~ 176 (182)
T KOG0072|consen 151 --------------DRIWQIVKTSAVKGEG---LDPAMDWLQR 176 (182)
T ss_pred --------------hheeEEEeeccccccC---CcHHHHHHHH
Confidence 2338899999999999 9999999975
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=170.34 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccc-eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK-ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~-~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
||+++|++|||||||+++++.+.+...+ +|+. .....+.+++. .+.+||+||+..+.. ++..++.++|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA-MRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH-HHHHHhhcCCEEEEEEE
Confidence 6899999999999999999998887665 3432 23344666664 788999999999887 68888999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC-CCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA-KSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
++++.+ ++....|+..+...... .++|+++|+||+|+... ..... . ...+...
T Consensus 80 ~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~~~~~~v~~-~-~~~~~~~--------------------- 133 (198)
T cd04147 80 VDDPES-FEEVERLREEILEVKED--KFVPIVVVGNKADSLEEERQVPA-K-DALSTVE--------------------- 133 (198)
T ss_pred CCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEEccccccccccccH-H-HHHHHHH---------------------
Confidence 998554 78887777777654322 34999999999999653 21111 1 1111110
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......++++||++|.| ++++++||.+
T Consensus 134 -------------~~~~~~~~~~Sa~~g~g---v~~l~~~l~~ 160 (198)
T cd04147 134 -------------LDWNCGFVETSAKDNEN---VLEVFKELLR 160 (198)
T ss_pred -------------hhcCCcEEEecCCCCCC---HHHHHHHHHH
Confidence 01125678999999999 9999999875
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=168.19 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=125.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.-+||+++|++++|||-|+.|+..+.|.... +|+|....+ +.++++ ..++|||+|+++|+. +...|++++-+.+
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrA-itSaYYrgAvGAl 91 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGAL 91 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcc-ccchhhcccceeE
Confidence 3478999999999999999999999986544 788876555 677777 788999999999998 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|||++...+ ++.+.+|+.+++.+ .++++++++|+||+||.+.+.+.........+-+
T Consensus 92 lVYDITr~~T-fenv~rWL~ELRdh---ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~------------------ 149 (222)
T KOG0087|consen 92 LVYDITRRQT-FENVERWLKELRDH---ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE------------------ 149 (222)
T ss_pred EEEechhHHH-HHHHHHHHHHHHhc---CCCCeEEEEeecchhhhhccccchhhhHhHHHhc------------------
Confidence 9999998555 99999999998865 4466999999999999886665433332222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
...|+++||+.+.+ +++.++-+.
T Consensus 150 -------------------~l~f~EtSAl~~tN---Ve~aF~~~l 172 (222)
T KOG0087|consen 150 -------------------GLFFLETSALDATN---VEKAFERVL 172 (222)
T ss_pred -------------------CceEEEeccccccc---HHHHHHHHH
Confidence 16789999999999 998886553
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-26 Score=166.87 Aligned_cols=158 Identities=13% Similarity=0.148 Sum_probs=110.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|||||||+++|+++.+...+ ++...... .+..++. .+.+||+||++.+.. ....+++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-LRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-cchhhcCCCCEEEEEE
Confidence 58999999999999999999998874443 44433222 2344443 799999999998776 5667778899999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH---------HHHHHHHHHHHhhhccccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV---------KTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~ 158 (211)
|++++.+ +......|...+.... .++|+++|+||+|+..+...... .+...+...
T Consensus 80 d~~~~~s-~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~------------ 143 (171)
T cd00157 80 SVDSPSS-FENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK------------ 143 (171)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH------------
Confidence 9998665 6665554444433221 24999999999999866543210 000000000
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
..+...++++||++|+| +++++++|.++
T Consensus 144 ----------------------~~~~~~~~~~Sa~~~~g---i~~l~~~i~~~ 171 (171)
T cd00157 144 ----------------------EIGAIGYMECSALTQEG---VKEVFEEAIRA 171 (171)
T ss_pred ----------------------HhCCeEEEEeecCCCCC---HHHHHHHHhhC
Confidence 01124889999999999 99999999764
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=164.02 Aligned_cols=152 Identities=21% Similarity=0.327 Sum_probs=118.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
||+++|+++||||||+++|.++.+...+ +|.+..... +.+++. .+.+||++|++.+.. +...+++++|++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS-LRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH-HHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 7999999999999999999999887766 566555443 555555 799999999999888 6788899999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|.++..+ +..+..|+..+..... .+.|+++++||.|+...+... +....+.+..+
T Consensus 80 d~~~~~S-~~~~~~~~~~i~~~~~---~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-------------------- 135 (162)
T PF00071_consen 80 DVTDEES-FENLKKWLEEIQKYKP---EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-------------------- 135 (162)
T ss_dssp ETTBHHH-HHTHHHHHHHHHHHST---TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT--------------------
T ss_pred ccccccc-cccccccccccccccc---ccccceeeeccccccccccchhhHHHHHHHHhC--------------------
Confidence 9999554 8888888777765432 348999999999998744432 22233333222
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++|||+++.| +.+++..+.+
T Consensus 136 ------------------~~~~e~Sa~~~~~---v~~~f~~~i~ 158 (162)
T PF00071_consen 136 ------------------VPYFEVSAKNGEN---VKEIFQELIR 158 (162)
T ss_dssp ------------------SEEEEEBTTTTTT---HHHHHHHHHH
T ss_pred ------------------CEEEEEECCCCCC---HHHHHHHHHH
Confidence 7899999999999 9999877653
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=159.57 Aligned_cols=152 Identities=18% Similarity=0.263 Sum_probs=125.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc-ccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCT-SLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++++|+|.+|+|||+|+.++..+.|...|. |+| +.+.++.+++. .+.||||+|+++|+. +...|+++.+++++|
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt-itstyyrgthgv~vV 87 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT-ITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH-HHHHHccCCceEEEE
Confidence 578899999999999999999999988884 444 45666777776 889999999999999 899999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|+++.++ |..+.+|+.++.++. +.+|-++|+||.|.++.+-+... ...+...
T Consensus 88 YDVTn~ES-F~Nv~rWLeei~~nc----dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~--------------------- 141 (198)
T KOG0079|consen 88 YDVTNGES-FNNVKRWLEEIRNNC----DSVPKVLVGNKNDDPERRVVDTEDARAFALQ--------------------- 141 (198)
T ss_pred EECcchhh-hHhHHHHHHHHHhcC----ccccceecccCCCCccceeeehHHHHHHHHh---------------------
Confidence 99999665 999999999997653 23899999999999887654322 2223222
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+|++|||..++ +++++.-|.+
T Consensus 142 -----------------mgie~FETSaKe~~N---vE~mF~cit~ 166 (198)
T KOG0079|consen 142 -----------------MGIELFETSAKENEN---VEAMFHCITK 166 (198)
T ss_pred -----------------cCchheehhhhhccc---chHHHHHHHH
Confidence 238899999999999 9999988764
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=169.67 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=80.3
Q ss_pred CCEEEEEcCCCCCHHHHHH-HHHcCcc-----cccc-cccce--eeE-E--------EEecCc--eEEEEECCCchhhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFA-RLVYSKY-----FESC-TSLKE--NVG-N--------FTYEKK--NIKIVDLPGEDRLRN 70 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~-~l~~~~~-----~~~~-~t~~~--~~~-~--------~~~~~~--~~~i~D~~G~~~~~~ 70 (211)
.+||+++|.+|||||||+. ++.++.+ ...+ ||++. .+. . ..+++. .+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 6665433 3333 66642 111 1 134554 8999999999752
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+...+++++|++|+|||++++.+ ++.+.. |+..+.... ++.|+++|+||+||..
T Consensus 80 -~~~~~~~~ad~iilv~d~t~~~S-f~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 -DRRFAYGRSDVVLLCFSIASPNS-LRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRY 134 (195)
T ss_pred -hhcccCCCCCEEEEEEECCChhH-HHHHHHHHHHHHHHhC----CCCCEEEEEEchhccc
Confidence 34557889999999999999665 888865 555543321 2489999999999964
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=165.77 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=116.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.||+++|++|||||||++++..+.+...+ ||++.. ...+.+++. .+.+|||||++.+.. ++..++..++++++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI-LPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHH-HHHHHHhhCCEEEEEE
Confidence 68999999999999999999988876544 554432 344566554 678999999999988 6888899999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|+++..+ ++.+..++..++...... +.|+++|+||+|+...+.... ....+.+.
T Consensus 81 d~~~~~~-~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~---------------------- 135 (180)
T cd04137 81 SVTSRKS-FEVVKVIYDKILDMLGKE--SVPIVLVGNKSDLHTQRQVSTEEGKELAES---------------------- 135 (180)
T ss_pred ECCCHHH-HHHHHHHHHHHHHhcCCC--CCCEEEEEEchhhhhcCccCHHHHHHHHHH----------------------
Confidence 9999654 888888888877643223 389999999999975433221 11111111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| ++++++||.+
T Consensus 136 ----------------~~~~~~~~Sa~~~~g---v~~l~~~l~~ 160 (180)
T cd04137 136 ----------------WGAAFLESSARENEN---VEEAFELLIE 160 (180)
T ss_pred ----------------cCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999874
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-26 Score=155.68 Aligned_cols=154 Identities=19% Similarity=0.280 Sum_probs=122.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe--cCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY--EKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~--~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
...|++++|++.+||||++.+++...|...+ .|.|......++ ..+ .+++|||+|+++++. +...|+++++++|
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrt-iTTayyRgamgfi 98 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRT-ITTAYYRGAMGFI 98 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhH-HHHHHhhccceEE
Confidence 3569999999999999999999999986665 677765544322 222 899999999999999 8999999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+++|+++ ++++..+..|...+... ...+ .|+|+|+||||+...+.. .+....+.+++.
T Consensus 99 LmyDitN-eeSf~svqdw~tqIkty-sw~n--aqvilvgnKCDmd~eRvis~e~g~~l~~~LG----------------- 157 (193)
T KOG0093|consen 99 LMYDITN-EESFNSVQDWITQIKTY-SWDN--AQVILVGNKCDMDSERVISHERGRQLADQLG----------------- 157 (193)
T ss_pred EEEecCC-HHHHHHHHHHHHHheee-eccC--ceEEEEecccCCccceeeeHHHHHHHHHHhC-----------------
Confidence 9999999 55588888887666543 3344 999999999999877653 344444555555
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
..|+++|||.+-+ ++.+++-+.
T Consensus 158 ---------------------fefFEtSaK~Nin---Vk~~Fe~lv 179 (193)
T KOG0093|consen 158 ---------------------FEFFETSAKENIN---VKQVFERLV 179 (193)
T ss_pred ---------------------hHHhhhccccccc---HHHHHHHHH
Confidence 5789999999999 999988765
|
|
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=157.07 Aligned_cols=120 Identities=22% Similarity=0.254 Sum_probs=100.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|+.|+|||+|+.++..+-|++.. .|+| +.+.++++++. ++.+|||+|+++|++ +...|++.++++|+|
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrs-itqsyyrsahalilv 86 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS-ITQSYYRSAHALILV 86 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH-HHHHHhhhcceEEEE
Confidence 68999999999999999999999986654 5555 45666777776 889999999999999 899999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV 136 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 136 (211)
+|++. +.+++...+|+.++-+.. ..++--++|+||+|+.+.+++.+
T Consensus 87 ydisc-qpsfdclpewlreie~ya---n~kvlkilvgnk~d~~drrevp~ 132 (213)
T KOG0095|consen 87 YDISC-QPSFDCLPEWLREIEQYA---NNKVLKILVGNKIDLADRREVPQ 132 (213)
T ss_pred Eeccc-CcchhhhHHHHHHHHHHh---hcceEEEeeccccchhhhhhhhH
Confidence 99987 445999999999887542 24477899999999988766543
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=160.69 Aligned_cols=153 Identities=17% Similarity=0.290 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
||+++|++|||||||++++++..+...+ +++... ...+.+++. .+.+||+||+..+.. .+..+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA-MRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHHhcCCEEEEEEE
Confidence 6899999999999999999988776555 343322 223555543 789999999998888 68888899999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
++++++ +.....++..+...... ..+|+++|+||+|+...... .+....+.+..
T Consensus 80 ~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---------------------- 134 (160)
T cd00876 80 ITDRES-FEEIKGYREQILRVKDD--EDIPIVLVGNKCDLENERQVSKEEGKALAKEW---------------------- 134 (160)
T ss_pred CCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEECCcccccceecHHHHHHHHHHc----------------------
Confidence 998664 77888887777654221 34999999999999863322 11111121111
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++|+| +++++++|.+
T Consensus 135 ----------------~~~~~~~S~~~~~~---i~~l~~~l~~ 158 (160)
T cd00876 135 ----------------GCPFIETSAKDNIN---IDEVFKLLVR 158 (160)
T ss_pred ----------------CCcEEEeccCCCCC---HHHHHHHHHh
Confidence 15789999999999 9999999875
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-26 Score=158.12 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=124.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc---eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~---~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+|++++|++.+|||||+..++.+++.+.. ||.|...- .+++... ++++|||+|+++|++ ++..|+++.-++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrs-itksyyrnsvgv 85 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRS-ITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHH-HHHHHhhcccce
Confidence 3579999999999999999999999997655 77775432 2455443 899999999999999 899999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|.++.++ ++.+..|+.+....-. ...++.+++|++|+||...+++.. ..+.+.+...
T Consensus 86 llvyditnr~s-fehv~~w~~ea~m~~q-~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg---------------- 147 (213)
T KOG0091|consen 86 LLVYDITNRES-FEHVENWVKEAAMATQ-GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG---------------- 147 (213)
T ss_pred EEEEeccchhh-HHHHHHHHHHHHHhcC-CCCeeEEEEeccccchhhhccccHHHHHHHHHhcC----------------
Confidence 99999999665 9999999887654422 123467789999999998877543 2333443333
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..|+++||++|.| ++|.++.|.+
T Consensus 148 ----------------------M~FVETSak~g~N---VeEAF~mlaq 170 (213)
T KOG0091|consen 148 ----------------------MAFVETSAKNGCN---VEEAFDMLAQ 170 (213)
T ss_pred ----------------------ceEEEecccCCCc---HHHHHHHHHH
Confidence 7899999999999 9999988753
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-25 Score=160.28 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=102.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-cc--cccceeeEEEEecCceEEEEECCCchhh----h----hhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFE-SC--TSLKENVGNFTYEKKNIKIVDLPGEDRL----R----NKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~----~----~~~~~~~~~~~ 80 (211)
++|+++|++|||||||+++|.+..+.. .+ +|.......+.+++..+.+|||||+... + ..........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 479999999999999999999887632 22 3455566666666779999999998321 0 00111112236
Q ss_pred CEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 81 KGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 81 d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
|++++|+|+++... .+.....++..+... .. +.|+++|+||+|+.+...... ..+...
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~--~~pvilv~NK~Dl~~~~~~~~----~~~~~~------------- 139 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FK--NKPVIVVLNKIDLLTFEDLSE----IEEEEE------------- 139 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh--cC--cCCeEEEEEccccCchhhHHH----HHHhhh-------------
Confidence 89999999987543 234444555544322 12 389999999999975543322 111000
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| ++++++||.+
T Consensus 140 ----------------------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 165 (168)
T cd01897 140 ----------------------LEGEEVLKISTLTEEG---VDEVKNKACE 165 (168)
T ss_pred ----------------------hccCceEEEEecccCC---HHHHHHHHHH
Confidence 1126789999999999 9999999975
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-25 Score=163.69 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=109.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+.||+++|++|+|||||++++..+.+.+.+ +|....+. .+.+++. .+.+||++|++.+.. ....++.++++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER-LRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccc-cchhhcCCCCEEEEE
Confidence 469999999999999999999987776544 44433332 3455554 688999999988776 556677889999999
Q ss_pred EeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-----------HHHHHHHHHHHHHhhhccc
Q psy1914 87 LDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-----------VVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-----------~~~~~l~~~~~~~~~~~~~ 154 (211)
+|+++.++ +..... |+..+.+. . +++|+++|+||+|+.+..... +....+.+.+
T Consensus 80 ~~i~~~~s-~~~~~~~~~~~i~~~--~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 145 (187)
T cd04129 80 FAVDTPDS-LENVRTKWIEEVRRY--C--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI--------- 145 (187)
T ss_pred EECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh---------
Confidence 99988654 777765 44444332 1 249999999999995432110 1111111111
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..++++|||++|+| ++++++++.+
T Consensus 146 ----------------------------~~~~~~e~Sa~~~~~---v~~~f~~l~~ 170 (187)
T cd04129 146 ----------------------------GAKKYMECSALTGEG---VDDVFEAATR 170 (187)
T ss_pred ----------------------------CCcEEEEccCCCCCC---HHHHHHHHHH
Confidence 114789999999999 9999999864
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=158.18 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---cccc---ccccceeeEEEEec-CceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK---YFES---CTSLKENVGNFTYE-KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~---~~~~---~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.|+++|++|||||||+++|++.. +... ..|.......+.+. +..+.+|||||++.+.. ....++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~-~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIK-NMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHH-HHHhhhhcCCEEE
Confidence 358999999999999999999643 2221 12334444456665 66999999999999876 4556778899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|+++.. ..+....+... .. ... .|+++|+||+|+.+........+.+.+.+... .
T Consensus 80 ~V~d~~~~~--~~~~~~~~~~~-~~--~~~--~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~------------ 137 (164)
T cd04171 80 LVVAADEGI--MPQTREHLEIL-EL--LGI--KRGLVVLTKADLVDEDWLELVEEEIRELLAGT---F------------ 137 (164)
T ss_pred EEEECCCCc--cHhHHHHHHHH-HH--hCC--CcEEEEEECccccCHHHHHHHHHHHHHHHHhc---C------------
Confidence 999997621 12222222211 11 111 49999999999975432222222333222210 0
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
....+++++||++|+| +++++++|.++
T Consensus 138 -----------------~~~~~~~~~Sa~~~~~---v~~l~~~l~~~ 164 (164)
T cd04171 138 -----------------LADAPIFPVSAVTGEG---IEELKEYLDEL 164 (164)
T ss_pred -----------------cCCCcEEEEeCCCCcC---HHHHHHHHhhC
Confidence 0126789999999999 99999999765
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-26 Score=160.34 Aligned_cols=163 Identities=22% Similarity=0.367 Sum_probs=135.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--------ccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--------YFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSS 79 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 79 (211)
++..+.++|+|+.++|||||+.++-... .....||.+.+++++.+.+..+.+||.+|++..++ +|..||..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrS-lw~~yY~~ 92 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRS-LWKKYYWL 92 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHH-HHHHHHHH
Confidence 4667899999999999999999876422 13445899999999999988999999999999999 89999999
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
++++|+++|+++++. +++....+..+..+....+ +|+++.+||.|+.+..+..++...+.. ... .
T Consensus 93 ~H~ii~viDa~~~eR-~~~~~t~~~~v~~~E~leg--~p~L~lankqd~q~~~~~~El~~~~~~-~e~---~-------- 157 (197)
T KOG0076|consen 93 AHGIIYVIDATDRER-FEESKTAFEKVVENEKLEG--APVLVLANKQDLQNAMEAAELDGVFGL-AEL---I-------- 157 (197)
T ss_pred hceeEEeecCCCHHH-HHHHHHHHHHHHHHHHhcC--CchhhhcchhhhhhhhhHHHHHHHhhh-hhh---c--------
Confidence 999999999999776 8888888888887766666 999999999999988777666655442 110 0
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-.+...+.+|||++|+| |++-.+|+++
T Consensus 158 ---------------------~~rd~~~~pvSal~geg---v~egi~w~v~ 184 (197)
T KOG0076|consen 158 ---------------------PRRDNPFQPVSALTGEG---VKEGIEWLVK 184 (197)
T ss_pred ---------------------CCccCccccchhhhccc---HHHHHHHHHH
Confidence 02347788999999999 9999999874
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=157.42 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=104.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhhh-----hhhHHHhh--hcCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLR-----NKFFDQYK--SSAK 81 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~--~~~d 81 (211)
++|+++|.||||||||+|+|++.+. ...+| |.....+.+.+.+..+.++|+||..++. ......++ ..+|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 5899999999999999999999874 45555 4555666788888999999999974322 11333343 5799
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++++|+|++..++ .......++. .++|+++|+||+|+..........+.+.+.++
T Consensus 81 ~ii~VvDa~~l~r----~l~l~~ql~e------~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------------- 135 (156)
T PF02421_consen 81 LIIVVVDATNLER----NLYLTLQLLE------LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------------- 135 (156)
T ss_dssp EEEEEEEGGGHHH----HHHHHHHHHH------TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT---------------
T ss_pred EEEEECCCCCHHH----HHHHHHHHHH------cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC---------------
Confidence 9999999977443 3333344432 23999999999999877665545566766666
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
++++.+||++|+| +++|++.|
T Consensus 136 -----------------------~pvi~~sa~~~~g---~~~L~~~I 156 (156)
T PF02421_consen 136 -----------------------VPVIPVSARTGEG---IDELKDAI 156 (156)
T ss_dssp -----------------------S-EEEEBTTTTBT---HHHHHHHH
T ss_pred -----------------------CCEEEEEeCCCcC---HHHHHhhC
Confidence 7899999999999 99999865
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=158.06 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-cc--ccccceeeEEEEecCc-eEEEEECCCchh----hhhhhHHH---hhhcCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF-ES--CTSLKENVGNFTYEKK-NIKIVDLPGEDR----LRNKFFDQ---YKSSAK 81 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~i~D~~G~~~----~~~~~~~~---~~~~~d 81 (211)
+|+++|++|||||||+++|.+.... .. .+|..+..+.+.+++. .+.+|||||+.. .+. +... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKG-LGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCC-chHHHHHHHHhCC
Confidence 6899999999999999999976541 12 2344555666777776 999999999731 111 2222 234699
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCc-CcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADP-QVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++++|+|+++++..++....+...+.... ... ++|+++|+||+|+.+..........+. ..
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~------------- 142 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELL--EKPRIVVLNKIDLLDEEELFELLKELL---KE------------- 142 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcccc--ccccEEEEEchhcCCchhhHHHHHHHH---hh-------------
Confidence 99999999986223555555554443321 112 389999999999976544322221111 10
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
.+..+++++||++|.| ++++++||.++
T Consensus 143 ---------------------~~~~~~~~~Sa~~~~g---i~~l~~~i~~~ 169 (170)
T cd01898 143 ---------------------LWGKPVFPISALTGEG---LDELLRKLAEL 169 (170)
T ss_pred ---------------------CCCCCEEEEecCCCCC---HHHHHHHHHhh
Confidence 0125679999999999 99999999764
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=159.89 Aligned_cols=155 Identities=15% Similarity=0.238 Sum_probs=117.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe--cCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY--EKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~--~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++++.+.+...+ ||.+.......+ ++. .+.+|||+|++.+.. ++..++..+++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~-~~~~~~~~~~~ 84 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG-LRDGYYIKGQC 84 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh-hhHHHhccCCE
Confidence 356789999999999999999998888776554 777766665444 333 889999999999887 68888889999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
+++|+|+++..+ +..+..|+..+... . .++|+++++||+|+........... +.+.
T Consensus 85 ~i~v~d~~~~~s-~~~~~~~~~~i~~~--~--~~~~i~lv~nK~Dl~~~~~~~~~~~-~~~~------------------ 140 (215)
T PTZ00132 85 AIIMFDVTSRIT-YKNVPNWHRDIVRV--C--ENIPIVLVGNKVDVKDRQVKARQIT-FHRK------------------ 140 (215)
T ss_pred EEEEEECcCHHH-HHHHHHHHHHHHHh--C--CCCCEEEEEECccCccccCCHHHHH-HHHH------------------
Confidence 999999998655 77887777776542 1 2389999999999864332221111 1110
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|.| +++++.||.+
T Consensus 141 --------------------~~~~~~e~Sa~~~~~---v~~~f~~ia~ 165 (215)
T PTZ00132 141 --------------------KNLQYYDISAKSNYN---FEKPFLWLAR 165 (215)
T ss_pred --------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999998864
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=154.10 Aligned_cols=157 Identities=19% Similarity=0.196 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeEEEEec---CceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVGNFTYE---KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.|+++|++|||||||+++|..+.+.... +|.......+..+ +..+.+|||||+..+.. ++..++..+|++++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~-~~~~~~~~~d~il~ 79 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-MRARGASLTDIAIL 79 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH-HHHHHHhhcCEEEE
Confidence 35899999999999999999988765542 2333333444554 45899999999998887 67878889999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|+++... .+....+..+.. .++|+++|+||+|+.... .......+.. +. ...
T Consensus 80 v~d~~~~~~--~~~~~~~~~~~~------~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~-~~---~~~------------- 133 (168)
T cd01887 80 VVAADDGVM--PQTIEAIKLAKA------ANVPFIVALNKIDKPNAN-PERVKNELSE-LG---LQG------------- 133 (168)
T ss_pred EEECCCCcc--HHHHHHHHHHHH------cCCCEEEEEEceeccccc-HHHHHHHHHH-hh---ccc-------------
Confidence 999987432 222222222221 238999999999997432 1112222211 10 000
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.......++++++||++|+| ++++++||.+
T Consensus 134 ------------~~~~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 163 (168)
T cd01887 134 ------------EDEWGGDVQIVPTSAKTGEG---IDDLLEAILL 163 (168)
T ss_pred ------------cccccCcCcEEEeecccCCC---HHHHHHHHHH
Confidence 00012236889999999999 9999999976
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-25 Score=155.28 Aligned_cols=154 Identities=18% Similarity=0.316 Sum_probs=122.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecC-------c----eEEEEECCCchhhhhhhHHHhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEK-------K----NIKIVDLPGEDRLRNKFFDQYK 77 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~-------~----~~~i~D~~G~~~~~~~~~~~~~ 77 (211)
+|++.+|.+|+||||++.++..++|.... .|+|+.. ..+.++. + .+++|||+|+++|++ +...++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS-LTTAFf 88 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS-LTTAFF 88 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH-HHHHHH
Confidence 57788999999999999999999987665 4555433 3344431 1 789999999999999 899999
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 156 (211)
+++-+++++||.++ +.++-.+..|+..+..+....+ ..+++++||+||.+.+.+.+. ...+..++.
T Consensus 89 RDAMGFlLiFDlT~-eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg---------- 155 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTS-EQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLEDQRVVSEDQAAALADKYG---------- 155 (219)
T ss_pred HhhccceEEEeccc-hHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhhhhhhhHHHHHHHHHHhC----------
Confidence 99999999999998 5569999999988876644444 679999999999988775433 333444444
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||-||.+ +++..+.|..
T Consensus 156 ----------------------------lPYfETSA~tg~N---v~kave~Lld 178 (219)
T KOG0081|consen 156 ----------------------------LPYFETSACTGTN---VEKAVELLLD 178 (219)
T ss_pred ----------------------------CCeeeeccccCcC---HHHHHHHHHH
Confidence 7999999999999 9987776643
|
|
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=151.52 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=121.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
+.-.+|++++|..-+|||||+-+++.++|.... .|.- +....+.+++. .+.+|||+|+++|+. +-+-||++.++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHA-LGPIYYRgSnG 88 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHA-LGPIYYRGSNG 88 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhc-cCceEEeCCCc
Confidence 445789999999999999999999999986554 2222 23344555555 899999999999999 78889999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|||++|.++ |+.+..|...+.+- .+..+.++||+||+||...+.+.-. .+.+.+...
T Consensus 89 alLVyDITDrdS-FqKVKnWV~Elr~m---lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG--------------- 149 (218)
T KOG0088|consen 89 ALLVYDITDRDS-FQKVKNWVLELRTM---LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG--------------- 149 (218)
T ss_pred eEEEEeccchHH-HHHHHHHHHHHHHH---hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc---------------
Confidence 999999999665 99999999888753 2344889999999999877664322 222221111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++||+.+.| |.++|+.|..
T Consensus 150 -----------------------A~y~eTSAk~N~G---i~elFe~Lt~ 172 (218)
T KOG0088|consen 150 -----------------------ALYMETSAKDNVG---ISELFESLTA 172 (218)
T ss_pred -----------------------hhheecccccccC---HHHHHHHHHH
Confidence 5668899999999 9999987753
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=153.24 Aligned_cols=150 Identities=18% Similarity=0.235 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc-------ccccc-c------cccee--e--EEEEe---cCc--eEEEEECCCchhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK-------YFESC-T------SLKEN--V--GNFTY---EKK--NIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~-------~~~~~-~------t~~~~--~--~~~~~---~~~--~~~i~D~~G~~~~~ 69 (211)
+|+++|.++||||||+++|++.. +...+ + +.+.. . ..+.+ ++. .+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998732 11111 1 11111 1 12223 223 78899999999998
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHh
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 149 (211)
. .+..+++++|++|+|+|+++... .... ..+..... .++|+++|+||+|+.+.. .....+.+.+.+.
T Consensus 82 ~-~~~~~~~~ad~~i~v~D~~~~~~-~~~~-~~~~~~~~------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~--- 148 (179)
T cd01890 82 Y-EVSRSLAACEGALLLVDATQGVE-AQTL-ANFYLALE------NNLEIIPVINKIDLPSAD-PERVKQQIEDVLG--- 148 (179)
T ss_pred H-HHHHHHHhcCeEEEEEECCCCcc-HhhH-HHHHHHHH------cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhC---
Confidence 8 67888899999999999987543 2222 22233221 238999999999996533 2222222222111
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ ....++++||++|+| +++++++|.+
T Consensus 149 -------------------------------~-~~~~~~~~Sa~~g~g---i~~l~~~l~~ 174 (179)
T cd01890 149 -------------------------------L-DPSEAILVSAKTGLG---VEDLLEAIVE 174 (179)
T ss_pred -------------------------------C-CcccEEEeeccCCCC---HHHHHHHHHh
Confidence 0 013478999999999 9999999875
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=157.16 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=103.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-cc--ccccceeeEEEEecCc-eEEEEECCCchh---------hhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-ES--CTSLKENVGNFTYEKK-NIKIVDLPGEDR---------LRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~i~D~~G~~~---------~~~~~~~~ 75 (211)
...++|+++|++|||||||++++++..+. .. .+|.......+.+.+. .+.+|||||+.. +.. .+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRS-TL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHH-HH-H
Confidence 44589999999999999999999987642 22 2455555666677665 899999999832 222 12 2
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
.+.++|++++|+|++++.. ...... +...+...... ++|+++|+||+|+.+..... ....
T Consensus 117 ~~~~~d~ii~v~D~~~~~~-~~~~~~-~~~~l~~~~~~--~~~viiV~NK~Dl~~~~~~~-------~~~~--------- 176 (204)
T cd01878 117 EVAEADLLLHVVDASDPDY-EEQIET-VEKVLKELGAE--DIPMILVLNKIDLLDDEELE-------ERLE--------- 176 (204)
T ss_pred HHhcCCeEEEEEECCCCCh-hhHHHH-HHHHHHHcCcC--CCCEEEEEEccccCChHHHH-------HHhh---------
Confidence 3567999999999988654 333322 23333322222 38999999999997543221 0000
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|.| ++++++||.+
T Consensus 177 --------------------------~~~~~~~~~Sa~~~~g---i~~l~~~L~~ 202 (204)
T cd01878 177 --------------------------AGRPDAVFISAKTGEG---LDELLEAIEE 202 (204)
T ss_pred --------------------------cCCCceEEEEcCCCCC---HHHHHHHHHh
Confidence 1125789999999999 9999999975
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=150.40 Aligned_cols=135 Identities=17% Similarity=0.184 Sum_probs=89.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCch-----hhhhhhHHHhhhcCCEEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGED-----RLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~d~ii~v~ 87 (211)
||+++|++|||||||+++|.+..+. ..+|.+ +.+.. .+|||||+. .++. +.. .++++|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~-~~~-~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQA-----VEYND---GAIDTPGEYVENRRLYSA-LIV-TAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-ccccee-----EEEcC---eeecCchhhhhhHHHHHH-HHH-HhhcCCEEEEEe
Confidence 8999999999999999999987652 223322 23332 689999983 2333 333 478899999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+... .. |.... . .|+++|+||+|+.+.....+....+.+...
T Consensus 71 d~~~~~s~~~--~~-~~~~~------~--~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--------------------- 118 (142)
T TIGR02528 71 SATDPESRFP--PG-FASIF------V--KPVIGLVTKIDLAEADVDIERAKELLETAG--------------------- 118 (142)
T ss_pred cCCCCCcCCC--hh-HHHhc------c--CCeEEEEEeeccCCcccCHHHHHHHHHHcC---------------------
Confidence 9998765221 22 22221 1 599999999999753222111111111110
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
..+++++||++|+| ++++++||.
T Consensus 119 ----------------~~~~~~~Sa~~~~g---i~~l~~~l~ 141 (142)
T TIGR02528 119 ----------------AEPIFEISSVDEQG---LEALVDYLN 141 (142)
T ss_pred ----------------CCcEEEEecCCCCC---HHHHHHHHh
Confidence 03678999999999 999999985
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=166.00 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=107.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEec-CceEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYE-KKNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..|+++|.+|||||||++++++.+. ...+ +|..++.+.+.+. +..+.+||+||... +... +..+++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~-flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHR-FLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHH-HHHHhhhc
Confidence 5789999999999999999997653 2333 4667778888884 45899999999742 2332 23345679
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+++++|+|+++.++ ++....|...+... ..+.+ +|+++|+||+|+.+...... ..+.....
T Consensus 238 ~vlI~ViD~s~~~s-~e~~~~~~~EL~~~~~~L~~--kp~IIV~NKiDL~~~~~~~~--~~~~~~~~------------- 299 (335)
T PRK12299 238 RLLLHLVDIEAVDP-VEDYKTIRNELEKYSPELAD--KPRILVLNKIDLLDEEEERE--KRAALELA------------- 299 (335)
T ss_pred CEEEEEEcCCCCCC-HHHHHHHHHHHHHhhhhccc--CCeEEEEECcccCCchhHHH--HHHHHHHH-------------
Confidence 99999999997553 55555555544332 11223 89999999999975443221 11111011
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++++++|.+
T Consensus 300 ----------------------~~~~~i~~iSAktg~G---I~eL~~~L~~ 325 (335)
T PRK12299 300 ----------------------ALGGPVFLISAVTGEG---LDELLRALWE 325 (335)
T ss_pred ----------------------hcCCCEEEEEcCCCCC---HHHHHHHHHH
Confidence 0115679999999999 9999999875
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=155.23 Aligned_cols=160 Identities=16% Similarity=0.270 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceeeEEEEecCceEEEEECCC-----------chhhhhhhHHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENVGNFTYEKKNIKIVDLPG-----------EDRLRNKFFDQ 75 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 75 (211)
....++|+++|++|||||||+|+|.+..+.. ..|+++.....+.++ .+.+||||| ++.++. .+..
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~ 82 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKD-EIVR 82 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHH-HHHH
Confidence 3457899999999999999999999877643 234444443344444 699999999 456665 4555
Q ss_pred hhh----cCCEEEEEEeCCCchhhHH--------HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 76 YKS----SAKGIVYVLDSSTVQKTLR--------DVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 76 ~~~----~~d~ii~v~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
++. .++++++|+|+++...... .....+...+.. .++|+++|+||+|+.+.. .+....+.+
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~--~~~~~~~~~ 155 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR--DEVLDEIAE 155 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH--HHHHHHHHH
Confidence 553 3578889999865321000 011122222221 238999999999996543 112222222
Q ss_pred HHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 144 ELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++. .. . + ..+..+++++||++| | ++++++||.+
T Consensus 156 ~~~~---~~--~----------------------~--~~~~~~~~~~SA~~g-g---i~~l~~~l~~ 189 (201)
T PRK04213 156 RLGL---YP--P----------------------W--RQWQDIIAPISAKKG-G---IEELKEAIRK 189 (201)
T ss_pred HhcC---Cc--c----------------------c--cccCCcEEEEecccC-C---HHHHHHHHHH
Confidence 2210 00 0 0 011136799999999 9 9999999975
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=154.01 Aligned_cols=119 Identities=21% Similarity=0.260 Sum_probs=96.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEec-----Cc--eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYE-----KK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~-----~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
+||+++|.++||||||+++++++.+...+ ||++.... .++++ +. .+.+|||+|++.+.. ++..++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~-l~~~~yr~ad 79 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS-TRAVFYNQVN 79 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH-HHHHHhCcCC
Confidence 58999999999999999999999887655 67664433 34553 22 789999999999988 7899999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCc----------------CcCCCCCcEEEEEeCCCccCCC
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADP----------------QVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
++|+|+|++++.+ ++.+..|+..+.... .....++|+++|+||+|+.+.+
T Consensus 80 ~iIlVyDvtn~~S-f~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 80 GIILVHDLTNRKS-SQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred EEEEEEECcChHH-HHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 9999999999665 889988888886531 1122459999999999997654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=151.40 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-------------------cccceeeEEEEecCceEEEEECCCchhhhhhhH
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-------------------TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 73 (211)
+|+++|.+|+|||||+|+|++....... .+.......+.+.+..+.+|||||+..+.. .+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~ 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSS-EV 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHH-HH
Confidence 4899999999999999999987654322 122222333455566899999999998887 57
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcc
Q psy1914 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 153 (211)
..+++.+|++++|+|++++.. ....+.+..... .+.|+++|+||+|+..........+.+.+.+........
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQ--PQTREHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST 151 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCc--HHHHHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch
Confidence 788889999999999987543 223333333321 238999999999998644444444444433331110000
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.. ... .-....+++++||++|.| +++++++|.+
T Consensus 152 ~~-------------------~~~--~~~~~~~v~~~Sa~~g~g---i~~l~~~l~~ 184 (189)
T cd00881 152 KE-------------------EGT--RNGLLVPIVPGSALTGIG---VEELLEAIVE 184 (189)
T ss_pred hh-------------------hhc--ccCCcceEEEEecccCcC---HHHHHHHHHh
Confidence 00 000 001337889999999999 9999999875
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=164.99 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=105.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecC-ceEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEK-KNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..|+++|.+|||||||+++|+..+. ...+ +|..++.+.+.+++ ..+.+||+||... +...++ ..+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~fl-rhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFL-KHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHH-HHHHhh
Confidence 5799999999999999999998653 3333 46667778888877 6999999999842 222222 234569
Q ss_pred CEEEEEEeCCCch--hhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTVQ--KTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++++|+|+++.+ ..++....+...+... ..+.. +|+++|+||+|+.+.....+..+.+.+.+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~--kp~IIV~NK~DL~~~~~~~~~~~~l~~~~------------ 302 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAE--KPRIVVLNKIDLLDEEELAELLKELKKAL------------ 302 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhcc--CCEEEEEeCccCCChHHHHHHHHHHHHHc------------
Confidence 9999999998641 2344444443333221 11233 89999999999975532222222221110
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++++| +++++++|.+
T Consensus 303 --------------------------~~~vi~iSAktg~G---I~eL~~~I~~ 326 (329)
T TIGR02729 303 --------------------------GKPVFPISALTGEG---LDELLYALAE 326 (329)
T ss_pred --------------------------CCcEEEEEccCCcC---HHHHHHHHHH
Confidence 14678999999999 9999999875
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=166.97 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=102.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-cc--ccccceeeEEEEec-CceEEEEECCCc---------hhhhhhhHHHh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF-ES--CTSLKENVGNFTYE-KKNIKIVDLPGE---------DRLRNKFFDQY 76 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~-~~~~~i~D~~G~---------~~~~~~~~~~~ 76 (211)
..++|+++|.+|+|||||+|+|++.... .. .+|..+....+.+. +..+.+|||||. +.|.. .+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~-tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRA-TL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHH-HH-HH
Confidence 4589999999999999999999987642 22 24666666777774 569999999998 23333 22 24
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
+.++|++++|+|++++.. ...... +..++...... ++|+++|+||+|+.+.... . ... .
T Consensus 266 ~~~ADlil~VvD~s~~~~-~~~~~~-~~~~L~~l~~~--~~piIlV~NK~Dl~~~~~v---~-~~~---~---------- 324 (351)
T TIGR03156 266 VREADLLLHVVDASDPDR-EEQIEA-VEKVLEELGAE--DIPQLLVYNKIDLLDEPRI---E-RLE---E---------- 324 (351)
T ss_pred HHhCCEEEEEEECCCCch-HHHHHH-HHHHHHHhccC--CCCEEEEEEeecCCChHhH---H-HHH---h----------
Confidence 677999999999998654 333322 23333321122 3899999999999643111 1 000 0
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++.+||++|+| +++|+++|.+
T Consensus 325 --------------------------~~~~~i~iSAktg~G---I~eL~~~I~~ 349 (351)
T TIGR03156 325 --------------------------GYPEAVFVSAKTGEG---LDLLLEAIAE 349 (351)
T ss_pred --------------------------CCCCEEEEEccCCCC---HHHHHHHHHh
Confidence 002468899999999 9999999975
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-23 Score=165.69 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=101.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEEEecCceEEEEECCCchhhhhh----h---HHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNFTYEKKNIKIVDLPGEDRLRNK----F---FDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~---~~~~~ 77 (211)
.+..+|+++|.+|||||||+|+|++.++.... +|.....+.++.++..+.+|||||+...... + ...++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 34569999999999999999999988764221 3334444567788889999999998432110 1 11236
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
.++|++++|+|+++. +.....++...+.. .+.|.++|+||+|+.+. ...+ +.+.+..
T Consensus 130 ~~aDvil~VvD~~~s---~~~~~~~il~~l~~-----~~~p~IlViNKiDl~~~-~~~~----~~~~l~~---------- 186 (339)
T PRK15494 130 HSADLVLLIIDSLKS---FDDITHNILDKLRS-----LNIVPIFLLNKIDIESK-YLND----IKAFLTE---------- 186 (339)
T ss_pred hhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEhhcCccc-cHHH----HHHHHHh----------
Confidence 789999999998763 23333334433322 12677899999999643 2222 2221210
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......++++||++|+| ++++++||.+
T Consensus 187 -----------------------~~~~~~i~~iSAktg~g---v~eL~~~L~~ 213 (339)
T PRK15494 187 -----------------------NHPDSLLFPISALSGKN---IDGLLEYITS 213 (339)
T ss_pred -----------------------cCCCcEEEEEeccCccC---HHHHHHHHHH
Confidence 01115789999999999 9999999975
|
|
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=141.16 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc-ccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCT-SLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+|-+++|.-|+|||+|+.++..++|..+.| |++...++ +++.+. ++.+|||+|+++|+. ..+.|++++.+.++|
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfra-vtrsyyrgaagalmv 90 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA-VTRSYYRGAAGALMV 90 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHH-HHHHHhccccceeEE
Confidence 578999999999999999999999987775 66665554 566665 889999999999999 799999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++... .+.....|+.+... +.+++..+++++||.||...+++.- ....+.+
T Consensus 91 yditrrs-tynhlsswl~dar~---ltnpnt~i~lignkadle~qrdv~yeeak~fae---------------------- 144 (215)
T KOG0097|consen 91 YDITRRS-TYNHLSSWLTDARN---LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAE---------------------- 144 (215)
T ss_pred EEehhhh-hhhhHHHHHhhhhc---cCCCceEEEEecchhhhhhcccCcHHHHHHHHh----------------------
Confidence 9998743 46777777776543 4556789999999999988776532 2222221
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
++...|.++|||||++ ++..+
T Consensus 145 ----------------engl~fle~saktg~n---vedaf 165 (215)
T KOG0097|consen 145 ----------------ENGLMFLEASAKTGQN---VEDAF 165 (215)
T ss_pred ----------------hcCeEEEEecccccCc---HHHHH
Confidence 1227889999999999 88755
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=149.28 Aligned_cols=144 Identities=24% Similarity=0.321 Sum_probs=100.5
Q ss_pred EEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhhhh-----hhHHHhhh--cCCEEEE
Q psy1914 16 LSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRN-----KFFDQYKS--SAKGIVY 85 (211)
Q Consensus 16 i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~--~~d~ii~ 85 (211)
++|.+|+|||||++++++..+ ...++ |.......+.+++..+.+|||||+..+.. .+...++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 579999999999999998763 23333 44445566788878999999999876543 13445553 8999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|++++.. . ..++..+.. .++|+++|+||+|+.+..........+.+.++
T Consensus 81 v~d~~~~~~-~---~~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~------------------- 131 (158)
T cd01879 81 VVDATNLER-N---LYLTLQLLE------LGLPVVVALNMIDEAEKRGIKIDLDKLSELLG------------------- 131 (158)
T ss_pred EeeCCcchh-H---HHHHHHHHH------cCCCEEEEEehhhhcccccchhhHHHHHHhhC-------------------
Confidence 999987543 1 223333322 13899999999999765433222222222111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++||++|+| +++++++|.+
T Consensus 132 -------------------~~~~~iSa~~~~~---~~~l~~~l~~ 154 (158)
T cd01879 132 -------------------VPVVPTSARKGEG---IDELKDAIAE 154 (158)
T ss_pred -------------------CCeEEEEccCCCC---HHHHHHHHHH
Confidence 5679999999999 9999999875
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=146.20 Aligned_cols=154 Identities=15% Similarity=0.195 Sum_probs=109.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecC--ceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEK--KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|.+|||||||++++....+...+ ++++..... +.+++ ..+.+||+||+..+.. ++..+.+.++.++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA-IRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH-HHHHHHhhhhEEEE
Confidence 379999999999999999999998854333 555554444 56666 4789999999988888 67778888999999
Q ss_pred EEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
++|.......+.... .+...+..... . +.|+++++||+|+....... ...+.+..
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~D~~~~~~~~----~~~~~~~~----------------- 135 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAE-S--NVPIILVGNKIDLRDAKLKT----HVAFLFAK----------------- 135 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcc-c--CCcEEEEEEcccCCcchhhH----HHHHHHhh-----------------
Confidence 999876522244444 33333332211 1 48999999999997654222 12211110
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
....+++++||++|+| ++++++||.
T Consensus 136 -----------------~~~~~~~~~sa~~~~g---v~~~~~~l~ 160 (161)
T TIGR00231 136 -----------------LNGEPIIPLSAETGKN---IDSAFKIVE 160 (161)
T ss_pred -----------------ccCCceEEeecCCCCC---HHHHHHHhh
Confidence 0114589999999999 999999985
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-23 Score=161.31 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc--ccc-ccceeeEE-EEecCceEEEEECCCchhhhhh-------hHHHhhhcCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFE--SCT-SLKENVGN-FTYEKKNIKIVDLPGEDRLRNK-------FFDQYKSSAK 81 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~--~~~-t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~~d 81 (211)
+|+++|++|||||||+|+|++.+... ..| |+...... ...++..+.+|||||....... ....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987532 222 33333333 3344558999999997532110 1234567899
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++++|+|+++... .. .++...+.. .+.|+++|+||+|+.... .....+......
T Consensus 82 vvl~VvD~~~~~~-~~---~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~-------------- 135 (270)
T TIGR00436 82 LILFVVDSDQWNG-DG---EFVLTKLQN-----LKRPVVLTRNKLDNKFKD---KLLPLIDKYAIL-------------- 135 (270)
T ss_pred EEEEEEECCCCCc-hH---HHHHHHHHh-----cCCCEEEEEECeeCCCHH---HHHHHHHHHHhh--------------
Confidence 9999999988544 22 333343332 238999999999996322 112111111110
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++|+++|.+
T Consensus 136 --------------------~~~~~v~~iSA~~g~g---i~~L~~~l~~ 161 (270)
T TIGR00436 136 --------------------EDFKDIVPISALTGDN---TSFLAAFIEV 161 (270)
T ss_pred --------------------cCCCceEEEecCCCCC---HHHHHHHHHH
Confidence 0002679999999999 9999999875
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=150.31 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=100.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc----cccc------ccccceeeEEEEec--------------CceEEEEECCCchh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK----YFES------CTSLKENVGNFTYE--------------KKNIKIVDLPGEDR 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~----~~~~------~~t~~~~~~~~~~~--------------~~~~~i~D~~G~~~ 67 (211)
++|+++|++|+|||||+++|+... +... ..|.......+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 1111 13444444444443 45899999999987
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
+...+. .....+|++++|+|+++... ... .+.+. +... .+ .|+++|+||+|+..........+.+.+.+..
T Consensus 81 ~~~~~~-~~~~~~d~vi~VvD~~~~~~-~~~-~~~~~-~~~~---~~--~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 81 LIRTII-GGAQIIDLMLLVVDATKGIQ-TQT-AECLV-IGEI---LC--KKLIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred HHHHHH-HHHhhCCEEEEEEECCCCcc-HHH-HHHHH-HHHH---cC--CCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 655333 34556899999999987432 111 11111 1111 12 7999999999997544333333333333221
Q ss_pred H-hhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 V-RRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. .... ...++++++||++|+| +++|+++|..
T Consensus 152 ~~~~~~-----------------------------~~~~~vi~iSa~~g~g---i~~L~~~l~~ 183 (192)
T cd01889 152 TLEKTR-----------------------------FKNSPIIPVSAKPGGG---EAELGKDLNN 183 (192)
T ss_pred HHHhcC-----------------------------cCCCCEEEEeccCCCC---HHHHHHHHHh
Confidence 0 0000 1126889999999999 9999999875
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-23 Score=153.11 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=125.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
..+||+++|.+|+|||+|..++..+.|...+ ||+...+ ..+.+++. .+.++||+|++.+.. +...+++.++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~-~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA-MRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChH-HHHHhhccCcEEEE
Confidence 4689999999999999999999999999887 6665433 34677766 888999999999988 78999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH-HHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK-TLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
||++++..+ |+.+..++..+++.+.... +|+++|+||+|+...+.+.... ..+..
T Consensus 81 Vysitd~~S-F~~~~~l~~~I~r~~~~~~--~PivlVGNK~Dl~~~R~V~~eeg~~la~--------------------- 136 (196)
T KOG0395|consen 81 VYSITDRSS-FEEAKQLREQILRVKGRDD--VPIILVGNKCDLERERQVSEEEGKALAR--------------------- 136 (196)
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhhCcCC--CCEEEEEEcccchhccccCHHHHHHHHH---------------------
Confidence 999999665 9999999998866544444 8999999999998755543222 22221
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.|+++||+...+ ++++|.-|..
T Consensus 137 -----------------~~~~~f~E~Sak~~~~---v~~~F~~L~r 162 (196)
T KOG0395|consen 137 -----------------SWGCAFIETSAKLNYN---VDEVFYELVR 162 (196)
T ss_pred -----------------hcCCcEEEeeccCCcC---HHHHHHHHHH
Confidence 2447899999999998 9999977653
|
|
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-23 Score=143.66 Aligned_cols=174 Identities=18% Similarity=0.240 Sum_probs=139.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
-++.-|++++|..|+|||||++.|-.+......||..+....+.+.+.+++.+|++||..-+. .|..|+..++++++.+
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr-~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARR-VWKDYFPQVDAIVYLV 95 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHH-HHHHHHhhhceeEeee
Confidence 356789999999999999999999999999999999999999999999999999999999988 7999999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|+-|.+. +.+++..+..++....++. +|+++.+||+|.+.+....+....+. + .............
T Consensus 96 da~d~er-~~es~~eld~ll~~e~la~--vp~lilgnKId~p~a~se~~l~~~l~--l--~~~t~~~~~v~~~------- 161 (193)
T KOG0077|consen 96 DAYDQER-FAESKKELDALLSDESLAT--VPFLILGNKIDIPYAASEDELRFHLG--L--SNFTTGKGKVNLT------- 161 (193)
T ss_pred ehhhHHH-hHHHHHHHHHHHhHHHHhc--CcceeecccccCCCcccHHHHHHHHH--H--HHHhccccccccc-------
Confidence 9999776 8999999999888776777 99999999999998774443333222 1 1111111100000
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..-.+++.++.||...+.| ..+.+.|+..
T Consensus 162 -----------~~~~rp~evfmcsi~~~~g---y~e~fkwl~q 190 (193)
T KOG0077|consen 162 -----------DSNVRPLEVFMCSIVRKMG---YGEGFKWLSQ 190 (193)
T ss_pred -----------CCCCCeEEEEEEEEEccCc---cceeeeehhh
Confidence 0114668999999999999 9999999864
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=150.74 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=80.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc--Ccccccc-------------cccc----eeeEEEEecCceEEEEECCCchhhhhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY--SKYFESC-------------TSLK----ENVGNFTYEKKNIKIVDLPGEDRLRNKF 72 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~--~~~~~~~-------------~t~~----~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 72 (211)
.+|+++|.+++|||||+++|+. +.+...+ ++.+ .....+..++..+.+|||||++.|.. .
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~ 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG-E 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH-H
Confidence 4799999999999999999997 4443322 1111 22233555666999999999999988 6
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+..+++++|++++|+|+++.. ......++..... .++|+++|+||+|+...
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~--~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP--MPQTRFVLKKALE------LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc--cHHHHHHHHHHHH------cCCCEEEEEECCCCCCC
Confidence 888999999999999998732 2333333333322 23899999999999754
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=149.13 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=103.4
Q ss_pred EEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEec-CceEEEEECCCchhhhh---hh---HHHhhhcCCEEEE
Q psy1914 16 LSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYE-KKNIKIVDLPGEDRLRN---KF---FDQYKSSAKGIVY 85 (211)
Q Consensus 16 i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~---~~---~~~~~~~~d~ii~ 85 (211)
++|++|||||||+++|.+... ...+ +|..+....+.++ +..+.+|||||+..... .+ +..+++++|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 2222 3455566667777 77999999999732110 01 2234667999999
Q ss_pred EEeCCCch-----hhHHHHHHHHHHHHcCcCc----CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 86 VLDSSTVQ-----KTLRDVAESLYVILADPQV----QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 86 v~d~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
|+|++++. ..+.+...+...+...... ...++|+++|+||+|+.......... .....
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~---------- 147 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELA---------- 147 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHh----------
Confidence 99998863 3355555555554432110 00238999999999997554332211 00000
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
......++++||++|.| +++++++|.++
T Consensus 148 ------------------------~~~~~~~~~~Sa~~~~g---l~~l~~~l~~~ 175 (176)
T cd01881 148 ------------------------LEEGAEVVPISAKTEEG---LDELIRAIYEL 175 (176)
T ss_pred ------------------------cCCCCCEEEEehhhhcC---HHHHHHHHHhh
Confidence 01225689999999999 99999998753
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-24 Score=155.78 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=94.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEec-Cc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYE-KK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~-~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+|++++|..++|||+|+..+..+.|+..+ ||.-.++.. +.++ ++ .+.+|||+|++.|.. +++..++++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr-lRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR-LRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccccc-ccccCCCCCCEEE
Confidence 4689999999999999999999999999888 555445544 7774 66 789999999999988 7778899999999
Q ss_pred EEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 85 YVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+||++.++++ +..+. .|+.++.... ++.|+++||+|.||...
T Consensus 82 ~cfsv~~p~S-~~nv~~kW~pEi~~~c----p~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 82 LCFSVVSPES-FENVKSKWIPEIKHHC----PNVPIILVGTKADLRDD 124 (198)
T ss_pred EEEEcCChhh-HHHHHhhhhHHHHhhC----CCCCEEEEeehHHhhhC
Confidence 9999999887 66654 4555444332 55999999999999833
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=142.90 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=101.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCceEEEEECCCchhh----------hhhhHHHh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRL----------RNKFFDQY 76 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~~ 76 (211)
.++|+++|.+|+|||||++++++.... ...+++. .....+..++..+.+|||||.... .......+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999987632 2223222 223446677778999999997432 11011234
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC--CHHHHHHHHHHHHHHHhhhccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK--SSSVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~ 154 (211)
+..+|++++|+|++++.+ . .....+..... .+.|+++++||+|+.+.. ......+.+.+.+..
T Consensus 82 ~~~~d~vi~v~d~~~~~~-~-~~~~~~~~~~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~------- 146 (174)
T cd01895 82 IERADVVLLVIDATEGIT-E-QDLRIAGLILE------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPF------- 146 (174)
T ss_pred HhhcCeEEEEEeCCCCcc-h-hHHHHHHHHHh------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccc-------
Confidence 567999999999988654 2 22222222221 238999999999997653 122222222221110
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
....+++++||++|+| ++++++++.++
T Consensus 147 ---------------------------~~~~~~~~~Sa~~~~~---i~~~~~~l~~~ 173 (174)
T cd01895 147 ---------------------------LDYAPIVFISALTGQG---VDKLFDAIDEV 173 (174)
T ss_pred ---------------------------ccCCceEEEeccCCCC---HHHHHHHHHHh
Confidence 0125789999999999 99999998763
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=140.83 Aligned_cols=152 Identities=26% Similarity=0.329 Sum_probs=106.4
Q ss_pred EEcCCCCCHHHHHHHHHcCcc-cccccccceeeEEEEec----CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 16 LSGLSLSGKTLLFARLVYSKY-FESCTSLKENVGNFTYE----KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 16 i~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
++|++|+|||||++++.+... .....++.......... +..+.+||+||+..+.. .+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS-LRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh-HHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 33333333555544443 44899999999988877 5677888999999999999
Q ss_pred CchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccC
Q psy1914 91 TVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLG 170 (211)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (211)
++.. ......++....... ...++|+++++||+|+........... .. ...
T Consensus 80 ~~~~-~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~~~~~~~~~-~~-~~~------------------------ 130 (157)
T cd00882 80 DRES-FENVKEWLLLILINK--EGENIPIILVGNKIDLPEERVVSEEEL-AE-QLA------------------------ 130 (157)
T ss_pred CHHH-HHHHHHHHHHHHHhh--ccCCCcEEEEEeccccccccchHHHHH-HH-HHH------------------------
Confidence 8554 555555422222221 223499999999999976654433210 00 000
Q ss_pred CCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 171 NPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++++|+++|.| ++++++||.+
T Consensus 131 ----------~~~~~~~~~~s~~~~~~---i~~~~~~l~~ 157 (157)
T cd00882 131 ----------KELGVPYFETSAKTGEN---VEELFEELAE 157 (157)
T ss_pred ----------hhcCCcEEEEecCCCCC---hHHHHHHHhC
Confidence 01237889999999999 9999999864
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=164.70 Aligned_cols=156 Identities=20% Similarity=0.226 Sum_probs=105.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
-..|+++|.+|||||||+|+|++.+. ...+ +|..++.+.+.+++..+.+||+||... ....++. ++.++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLr-hiera 237 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLR-HIERC 237 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHH-HHHhc
Confidence 36899999999999999999998654 3344 466678888888888999999999632 1121232 45679
Q ss_pred CEEEEEEeCCCch------hhHHHHHHHHHHHHcCc-------CcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 81 KGIVYVLDSSTVQ------KTLRDVAESLYVILADP-------QVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 81 d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~-------~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
+++++|+|+++.+ ..+..+...+....... .+. ++|+++|+||+|+.+.... .+.+...+..
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~--~kP~IVVlNKiDL~da~el---~e~l~~~l~~ 312 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLA--ERPRLVVLNKIDVPDAREL---AEFVRPELEA 312 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhc--CCCEEEEEECccchhhHHH---HHHHHHHHHH
Confidence 9999999997532 12333333333332100 122 3899999999999744322 2222211210
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++|++||.+
T Consensus 313 -----------------------------------~g~~Vf~ISA~tgeG---LdEL~~~L~e 337 (500)
T PRK12296 313 -----------------------------------RGWPVFEVSAASREG---LRELSFALAE 337 (500)
T ss_pred -----------------------------------cCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 115789999999999 9999999875
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=165.74 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=103.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCceEEEEECCCch----------hhhhhhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGED----------RLRNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~ 75 (211)
..++|+++|.+|||||||+|+|++... ....++++ .....+.+++..+.+|||||.. .+.......
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 358999999999999999999998764 33334333 3344567788889999999962 233211233
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
+++++|++++|+|+++..+ .+.. .++..+.. .++|+++|+||+|+.+..........+.+.+.
T Consensus 290 ~i~~ad~vilV~Da~~~~s-~~~~-~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~--------- 352 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPIS-EQDQ-RVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDRELA--------- 352 (472)
T ss_pred HHhcCCEEEEEEeCCCCCC-HHHH-HHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhcc---------
Confidence 5688999999999988544 3222 33333322 23899999999999753222211122211111
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ....+++++||++|.| ++++++.|.+
T Consensus 353 ------------------------~-~~~~~~~~~SAk~g~g---v~~lf~~i~~ 379 (472)
T PRK03003 353 ------------------------Q-VPWAPRVNISAKTGRA---VDKLVPALET 379 (472)
T ss_pred ------------------------c-CCCCCEEEEECCCCCC---HHHHHHHHHH
Confidence 0 0114678899999999 9999998864
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=154.60 Aligned_cols=121 Identities=22% Similarity=0.243 Sum_probs=96.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecC---------------ceEEEEECCCchhhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEK---------------KNIKIVDLPGEDRLRN 70 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~---------------~~~~i~D~~G~~~~~~ 70 (211)
...+||+++|..|||||||++++.++.+...+ +|++... ..+.+++ ..+.||||+|++.|+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 34689999999999999999999999887665 7777654 3455532 2689999999999998
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCc---------CCCCCcEEEEEeCCCccCC
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQV---------QSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~p~iiv~nK~Dl~~~ 131 (211)
++..|+++++++|+|+|+++.. ++..+..|+..+...... ...++|++||+||+||...
T Consensus 99 -L~~~yyr~AdgiILVyDITdr~-SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 -CRSLFYSQINGVIFVHDLSQRR-TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred -hhHHhccCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 8999999999999999999955 488888888877654211 0124899999999999754
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=165.53 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=108.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc-eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.++|+++|++++|||||+++|.+..+.... +.++. ....+.+++. .+.+||||||+.|.. ++..++..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-MRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhh-HHHhhhccCCEEE
Confidence 35689999999999999999999987765433 32333 3334566555 899999999999988 6777888899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|+++.. ..+..+.+..... .++|+++++||+|+.+.. .......+.. ... ..
T Consensus 164 LVVda~dgv--~~qT~e~i~~~~~------~~vPiIVviNKiDl~~~~-~e~v~~~L~~-~g~---~~------------ 218 (587)
T TIGR00487 164 LVVAADDGV--MPQTIEAISHAKA------ANVPIIVAINKIDKPEAN-PDRVKQELSE-YGL---VP------------ 218 (587)
T ss_pred EEEECCCCC--CHhHHHHHHHHHH------cCCCEEEEEECcccccCC-HHHHHHHHHH-hhh---hH------------
Confidence 999997632 2333344333221 238999999999997532 2222222221 110 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
......++++++||++|+| +++++++|.
T Consensus 219 --------------~~~~~~~~~v~iSAktGeG---I~eLl~~I~ 246 (587)
T TIGR00487 219 --------------EDWGGDTIFVPVSALTGDG---IDELLDMIL 246 (587)
T ss_pred --------------HhcCCCceEEEEECCCCCC---hHHHHHhhh
Confidence 0011236889999999999 999999985
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-23 Score=142.02 Aligned_cols=148 Identities=18% Similarity=0.255 Sum_probs=114.6
Q ss_pred EEEcCCCCCHHHHHHHHHcCcccccc--cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 15 LLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 15 ~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+++|.+++|||+|+-++..+.|.... .|.|..+. .++.+++ ++++|||+|+++|++ ....|++++|++++++|
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs-vt~ayyrda~allllyd 79 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS-VTHAYYRDADALLLLYD 79 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh-hhHhhhcccceeeeeee
Confidence 36899999999999999887774332 55555443 4677776 889999999999999 78899999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
+.+..+ ++....|+..+.... +..+.+.+++||+|+.+.+. ..+.-+.+.+.+.
T Consensus 80 iankas-fdn~~~wlsei~ey~---k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~--------------------- 134 (192)
T KOG0083|consen 80 IANKAS-FDNCQAWLSEIHEYA---KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG--------------------- 134 (192)
T ss_pred cccchh-HHHHHHHHHHHHHHH---HhhHhHhhhccccccchhhccccchHHHHHHHHC---------------------
Confidence 998665 999999998886542 23478999999999976443 2333444554444
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
++|.++|||||-+ ++..+--|
T Consensus 135 -----------------ipfmetsaktg~n---vd~af~~i 155 (192)
T KOG0083|consen 135 -----------------IPFMETSAKTGFN---VDLAFLAI 155 (192)
T ss_pred -----------------CCceecccccccc---HhHHHHHH
Confidence 7889999999998 88766544
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=143.75 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=106.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cc-------------------cccccceeeEEEE--ecCceEEEEECCCch
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FE-------------------SCTSLKENVGNFT--YEKKNIKIVDLPGED 66 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~-------------------~~~t~~~~~~~~~--~~~~~~~i~D~~G~~ 66 (211)
+..+|+++|+.++|||||+.+|+...- .. ...|+......+. ..+..++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 457899999999999999999995331 10 0023333444455 556699999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
.|..+ ....+..+|++|+|+|+.+... .+..+.+..+.. .++|+++|+||+|+. .....+..+++.+.+-
T Consensus 82 ~f~~~-~~~~~~~~D~ailvVda~~g~~--~~~~~~l~~~~~------~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 82 DFIKE-MIRGLRQADIAILVVDANDGIQ--PQTEEHLKILRE------LGIPIIVVLNKMDLI-EKELEEIIEEIKEKLL 151 (188)
T ss_dssp HHHHH-HHHHHTTSSEEEEEEETTTBST--HHHHHHHHHHHH------TT-SEEEEEETCTSS-HHHHHHHHHHHHHHHH
T ss_pred ceeec-ccceecccccceeeeecccccc--cccccccccccc------cccceEEeeeeccch-hhhHHHHHHHHHHHhc
Confidence 99885 5556788999999999987433 344444444433 238999999999998 2112222222221120
Q ss_pred HHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 147 LVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
... ...+ ...++++.+||++|.| +++|++.|.+
T Consensus 152 --~~~---~~~~-----------------------~~~~~vi~~Sa~~g~g---i~~Ll~~l~~ 184 (188)
T PF00009_consen 152 --KEY---GENG-----------------------EEIVPVIPISALTGDG---IDELLEALVE 184 (188)
T ss_dssp --HHT---TSTT-----------------------TSTEEEEEEBTTTTBT---HHHHHHHHHH
T ss_pred --ccc---ccCc-----------------------cccceEEEEecCCCCC---HHHHHHHHHH
Confidence 000 0000 0138999999999999 9999999875
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-21 Score=158.64 Aligned_cols=152 Identities=20% Similarity=0.231 Sum_probs=101.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEec-CceEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYE-KKNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..|+++|.+|||||||++++++.+. ...+ +|..++...+.++ +..+.+||+||... +...+ -..+.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~f-Lrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQF-LRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHH-HHHHhhC
Confidence 3899999999999999999998664 2333 4666777778877 56999999999732 12212 2234569
Q ss_pred CEEEEEEeCCCch--hhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTVQ--KTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++++|+|+++.+ ..++....+...+... ..+. ++|+++|+||+|+... .+..+.+.+.+.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~--~kP~IVV~NK~DL~~~---~e~l~~l~~~l~----------- 301 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLL--ERPQIVVANKMDLPEA---EENLEEFKEKLG----------- 301 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhcc--CCcEEEEEeCCCCcCC---HHHHHHHHHHhC-----------
Confidence 9999999997631 2233333333333221 1123 3899999999998432 111122221111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++||++|+| +++|+++|.+
T Consensus 302 ---------------------------~~i~~iSA~tgeG---I~eL~~~L~~ 324 (424)
T PRK12297 302 ---------------------------PKVFPISALTGQG---LDELLYAVAE 324 (424)
T ss_pred ---------------------------CcEEEEeCCCCCC---HHHHHHHHHH
Confidence 4678999999999 9999999865
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=163.42 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=103.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecCceEEEEECCCchhhhhh-------hHHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~ 77 (211)
+..++|+++|++|+|||||+|+|++... ....+ |.......+.+++..+.+|||||+..+... ....++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4578999999999999999999998764 34444 333344557788889999999998643320 123357
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++++|+|++++.+ ... ...+.. . .++|+++|+||+|+.+..... .
T Consensus 293 ~~aD~il~VvD~s~~~s-~~~-~~~l~~------~--~~~piiiV~NK~DL~~~~~~~----------~----------- 341 (449)
T PRK05291 293 EEADLVLLVLDASEPLT-EED-DEILEE------L--KDKPVIVVLNKADLTGEIDLE----------E----------- 341 (449)
T ss_pred HhCCEEEEEecCCCCCC-hhH-HHHHHh------c--CCCCcEEEEEhhhccccchhh----------h-----------
Confidence 78999999999988654 332 222222 1 238999999999997543221 0
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++++++|.+
T Consensus 342 ------------------------~~~~~~i~iSAktg~G---I~~L~~~L~~ 367 (449)
T PRK05291 342 ------------------------ENGKPVIRISAKTGEG---IDELREAIKE 367 (449)
T ss_pred ------------------------ccCCceEEEEeeCCCC---HHHHHHHHHH
Confidence 0114678999999999 9999999865
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=140.58 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=95.9
Q ss_pred EEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCceEEEEECCCchhhhh----h---hHHHhhhcCCEE
Q psy1914 15 LLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRN----K---FFDQYKSSAKGI 83 (211)
Q Consensus 15 ~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~~d~i 83 (211)
+++|.+|+|||||+++|++... ....+.+ ........+++..+.+|||||+..+.. . .+..+++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999998652 2333322 233445666777899999999876432 0 233456789999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|+.++..... ..+...++. .+.|+++|+||+|+.+.... ...+. .+.
T Consensus 81 i~v~d~~~~~~~~~---~~~~~~~~~-----~~~piiiv~nK~D~~~~~~~---~~~~~-~~~----------------- 131 (157)
T cd01894 81 LFVVDGREGLTPAD---EEIAKYLRK-----SKKPVILVVNKVDNIKEEDE---AAEFY-SLG----------------- 131 (157)
T ss_pred EEEEeccccCCccH---HHHHHHHHh-----cCCCEEEEEECcccCChHHH---HHHHH-hcC-----------------
Confidence 99999976433111 122333322 12899999999999754322 11111 000
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. .+++++||++|+| +++++++|.+
T Consensus 132 -------------------~-~~~~~~Sa~~~~g---v~~l~~~l~~ 155 (157)
T cd01894 132 -------------------F-GEPIPISAEHGRG---IGDLLDAILE 155 (157)
T ss_pred -------------------C-CCeEEEecccCCC---HHHHHHHHHh
Confidence 0 2468899999999 9999999875
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=142.06 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=93.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccccc--eeeEEEEecCceEEEEECCCch----------hhhhhhHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESCTSLK--ENVGNFTYEKKNIKIVDLPGED----------RLRNKFFD 74 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~ 74 (211)
+...++|+++|++|+|||||+|++++..+. ...++.+ .....+..+ ..+.+|||||.. .+.. +..
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~-~~~ 92 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK-LIE 92 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH-HHH
Confidence 467899999999999999999999987632 2223322 222233443 379999999952 2333 233
Q ss_pred Hhhh---cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhh
Q psy1914 75 QYKS---SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 75 ~~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
.+++ .++++++|+|++++.. .... .+...+.. .++|+++|+||+|+..........+.+.+.+..
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~--~~~~-~~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~---- 160 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLK--ELDL-EMLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK---- 160 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCC--HHHH-HHHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh----
Confidence 4554 3579999999976432 1111 22233322 238999999999997544444444444444431
Q ss_pred cccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCC
Q psy1914 152 KSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSAS 197 (211)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g 197 (211)
...+..++++||++|+|
T Consensus 161 -----------------------------~~~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 161 -----------------------------DADDPSVQLFSSLKKTG 177 (179)
T ss_pred -----------------------------ccCCCceEEEECCCCCC
Confidence 01225789999999999
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=159.99 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=98.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccc--cccceeeEEEEecCc-eEEEEECCCchhh-hhhhHH------HhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF-ESC--TSLKENVGNFTYEKK-NIKIVDLPGEDRL-RNKFFD------QYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~~-~~~~~~------~~~~~~ 80 (211)
++|+++|.+|||||||+|+|++.+.. ... .|..+....+.+.+. .+.+|||||..+. ....+. ..++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 69999999999999999999987642 222 455555666777665 8899999998431 111122 235779
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
|++++|+|++++.. .... ..+..++..... .++|+++|+||+|+...... .+.. .. .
T Consensus 278 DlIL~VvDaS~~~~-~e~l-~~v~~iL~el~~--~~~pvIiV~NKiDL~~~~~~-----~~~~-~~-------~------ 334 (426)
T PRK11058 278 TLLLHVVDAADVRV-QENI-EAVNTVLEEIDA--HEIPTLLVMNKIDMLDDFEP-----RIDR-DE-------E------ 334 (426)
T ss_pred CEEEEEEeCCCccH-HHHH-HHHHHHHHHhcc--CCCCEEEEEEcccCCCchhH-----HHHH-Hh-------c------
Confidence 99999999998653 3332 222222222111 23899999999999643111 0110 00 0
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.. ..++.+||++|+| +++|+++|.+
T Consensus 335 ---------------------~~-~~~v~ISAktG~G---IdeL~e~I~~ 359 (426)
T PRK11058 335 ---------------------NK-PIRVWLSAQTGAG---IPLLFQALTE 359 (426)
T ss_pred ---------------------CC-CceEEEeCCCCCC---HHHHHHHHHH
Confidence 00 1247799999999 9999999875
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=160.97 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=102.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCceEEEEECCCchhhhh----------hhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN----------KFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~ 75 (211)
..++|+++|.+|+|||||+|+|++... ....+.+. .....+.+++..+.+|||||+.+... .....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 457999999999999999999998763 23333222 23344667777999999999743321 11233
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC-CCCHHHHHHHHHHHHHHHhhhccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL-AKSSSVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~l~~~~~~~~~~~~~ 154 (211)
+++.+|++++|+|++++.+ .+....+..+.. .++|+++|+||+|+.. .....+..+.+...+..
T Consensus 251 ~~~~ad~~ilV~D~~~~~~--~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~------- 315 (429)
T TIGR03594 251 AIERADVVLLVLDATEGIT--EQDLRIAGLILE------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPF------- 315 (429)
T ss_pred HHHhCCEEEEEEECCCCcc--HHHHHHHHHHHH------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhccc-------
Confidence 5788999999999987543 222233333322 2389999999999972 11122222222211110
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..+++++|||++|.| +++++++|.+
T Consensus 316 ---------------------------~~~~~vi~~SA~~g~~---v~~l~~~i~~ 341 (429)
T TIGR03594 316 ---------------------------LDFAPIVFISALTGQG---VDKLLDAIDE 341 (429)
T ss_pred ---------------------------CCCCceEEEeCCCCCC---HHHHHHHHHH
Confidence 0126789999999999 9999999865
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=139.40 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=98.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCceEEEEECCCchhhhhh-------hHHHhhhc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYKSS 79 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~ 79 (211)
.++|+++|++|+|||||++++.+.... ...+++. .....+.+++..+.+|||||+..+... ....++..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 368999999999999999999987642 2233332 233445666668999999997543220 12235567
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++|+|++++.. ......+ .. . .+.|+++|+||+|+.+.... ..
T Consensus 81 ~~~~v~v~d~~~~~~-~~~~~~~-~~------~--~~~~vi~v~nK~D~~~~~~~------~~----------------- 127 (157)
T cd04164 81 ADLVLFVIDASRGLD-EEDLEIL-EL------P--ADKPIIVVLNKSDLLPDSEL------LS----------------- 127 (157)
T ss_pred CCEEEEEEECCCCCC-HHHHHHH-Hh------h--cCCCEEEEEEchhcCCcccc------cc-----------------
Confidence 999999999997554 2222111 11 1 23899999999999754432 00
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++++||++|.| +++++++|.+
T Consensus 128 ---------------------~~~~~~~~~~Sa~~~~~---v~~l~~~l~~ 154 (157)
T cd04164 128 ---------------------LLAGKPIIAISAKTGEG---LDELKEALLE 154 (157)
T ss_pred ---------------------ccCCCceEEEECCCCCC---HHHHHHHHHH
Confidence 01226789999999999 9999999875
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-21 Score=145.22 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=96.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---cccc---cccceeeEEEEec---------------------------C----
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY---FESC---TSLKENVGNFTYE---------------------------K---- 54 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~---~~~~---~t~~~~~~~~~~~---------------------------~---- 54 (211)
++|+++|+.|+|||||+.++.+-.. .... .++......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 1100 1111111111111 2
Q ss_pred --ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 55 --KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 55 --~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
..+.+|||||++.+... +...+..+|++++|+|++++.. ..+....+..+... .. .|+++|+||+|+.+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~-~~~~~~~~D~~llVvd~~~~~~-~~~t~~~l~~~~~~---~~--~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMAT-MLSGAAVMDGALLLIAANEPCP-QPQTSEHLAALEIM---GL--KHIIIVQNKIDLVKEE 153 (203)
T ss_pred cccEEEEEECCChHHHHHH-HHHhhhcCCEEEEEEECCCCCC-CcchHHHHHHHHHc---CC--CcEEEEEEchhccCHH
Confidence 47899999999988874 5556677999999999987321 11222222222111 11 4799999999997433
Q ss_pred CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 133 SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......+.+.+.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 154 ~~~~~~~~i~~~~~~---~-----------------------------~~~~~~i~~vSA~~g~g---i~~L~~~l~~ 196 (203)
T cd01888 154 QALENYEQIKKFVKG---T-----------------------------IAENAPIIPISAQLKYN---IDVLLEYIVK 196 (203)
T ss_pred HHHHHHHHHHHHHhc---c-----------------------------ccCCCcEEEEeCCCCCC---HHHHHHHHHH
Confidence 222222222221110 0 01126789999999999 9999999875
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=146.09 Aligned_cols=120 Identities=26% Similarity=0.256 Sum_probs=92.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccccc-ccceeeEEEEecC----ceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCT-SLKENVGNFTYEK----KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~~~~~~~~~----~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||+++|.++.+...++ |++.......... ..+.+|||+|++.++. ++..|+.+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~-~~~~y~~~~~~~l~ 83 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRS-LRPEYYRGANGILI 83 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHH-HHHHHhcCCCEEEE
Confidence 4899999999999999999999999987664 5454444432222 2699999999999999 89999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
|+|..+..+..+....|...+..... .+.|+++|+||+|+......
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~---~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAP---DDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCC---CCceEEEEecccccccchhH
Confidence 99999866644444455444443221 23899999999999877554
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-21 Score=160.92 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=100.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCceEEEEECCCchh--------hhhhhHHHhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 77 (211)
..++|+++|.+|||||||+|+|++.... ...|+++ .....+.+++..+.+|||||++. +.. .+..++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~-~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAE-QAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHH-HHHHHH
Confidence 3479999999999999999999987642 3333332 23444677788999999999752 333 345577
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++|+|+|+++..+.. ...+...++. .++|+++|+||+|+..... +..+ + ..
T Consensus 116 ~~aD~il~VvD~~~~~s~~---~~~i~~~l~~-----~~~piilV~NK~Dl~~~~~--~~~~-~---~~----------- 170 (472)
T PRK03003 116 RTADAVLFVVDATVGATAT---DEAVARVLRR-----SGKPVILAANKVDDERGEA--DAAA-L---WS----------- 170 (472)
T ss_pred HhCCEEEEEEECCCCCCHH---HHHHHHHHHH-----cCCCEEEEEECccCCccch--hhHH-H---Hh-----------
Confidence 8899999999998854311 1223333332 2389999999999964321 1110 0 00
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++.. ..++|||++|.| +++|+++|.+
T Consensus 171 -----------------------~g~~-~~~~iSA~~g~g---i~eL~~~i~~ 196 (472)
T PRK03003 171 -----------------------LGLG-EPHPVSALHGRG---VGDLLDAVLA 196 (472)
T ss_pred -----------------------cCCC-CeEEEEcCCCCC---cHHHHHHHHh
Confidence 0000 125799999999 9999999875
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-21 Score=167.01 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=110.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-c--ccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-T--SLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+.+.|+++|+.++|||||+++|....+.... + |.......+.+++..+++||||||..|.. ++...+..+|++|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~-m~~rga~~aDiaI 365 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA-MRARGAQVTDIVV 365 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchh-HHHhhhhhCCEEE
Confidence 346789999999999999999999887664322 2 22233344667777999999999999988 6777888899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|+.+.. ..+..+.+..... .++|+++++||+|+.+.. ...+...+.. ... ..
T Consensus 366 LVVdAddGv--~~qT~e~i~~a~~------~~vPiIVviNKiDl~~a~-~e~V~~eL~~-~~~---~~------------ 420 (787)
T PRK05306 366 LVVAADDGV--MPQTIEAINHAKA------AGVPIIVAINKIDKPGAN-PDRVKQELSE-YGL---VP------------ 420 (787)
T ss_pred EEEECCCCC--CHhHHHHHHHHHh------cCCcEEEEEECccccccC-HHHHHHHHHH-hcc---cH------------
Confidence 999998732 2333333333221 238999999999996542 2222222221 100 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
++....++++++||++|+| +++|+++|.
T Consensus 421 --------------e~~g~~vp~vpvSAktG~G---I~eLle~I~ 448 (787)
T PRK05306 421 --------------EEWGGDTIFVPVSAKTGEG---IDELLEAIL 448 (787)
T ss_pred --------------HHhCCCceEEEEeCCCCCC---chHHHHhhh
Confidence 0112337899999999999 999999985
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=140.83 Aligned_cols=154 Identities=19% Similarity=0.318 Sum_probs=97.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-cccccee--eEEEEecCceEEEEECCCc----------hhhhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKEN--VGNFTYEKKNIKIVDLPGE----------DRLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~--~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~ 75 (211)
...++|+++|++|+|||||++++++..+... .++.+.. ...... +..+.+|||||+ +.+.. +...
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~~~~-~~~~ 99 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-NDKLRLVDLPGYGYAKVSKEEKEKWQK-LIEE 99 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-CCeEEEeCCCCCCCcCCCchHHHHHHH-HHHH
Confidence 4568999999999999999999998764322 2333221 222222 358999999995 23333 3444
Q ss_pred hhhcC---CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy1914 76 YKSSA---KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 76 ~~~~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
+++.+ +++++|+|++++..... .++...+.. .++|+++++||+|+..........+.+.+.+..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~---~~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~----- 166 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELD---LQMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF----- 166 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHH---HHHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh-----
Confidence 55544 67888899876433121 122222221 238999999999997554333222323322220
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|+| +++++++|.+
T Consensus 167 ------------------------------~~~~~~~~Sa~~~~g---i~~l~~~i~~ 191 (196)
T PRK00454 167 ------------------------------GDDEVILFSSLKKQG---IDELRAAIAK 191 (196)
T ss_pred ------------------------------cCCceEEEEcCCCCC---HHHHHHHHHH
Confidence 025778999999999 9999999875
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=156.81 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=83.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccccccccce--eeEEEEecCceEEEEECCCchhhhh-------hhHHHh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YFESCTSLKE--NVGNFTYEKKNIKIVDLPGEDRLRN-------KFFDQY 76 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~ 76 (211)
.+..++|+++|++|||||||+|+|++.. +...+|+++. ....+.+++..+.+|||||+..... .....+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 3567899999999999999999999865 3445554443 3445778888999999999854332 012346
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
++.+|++++|+|++++.+ .... |+..... .++|+++|+||+|+...
T Consensus 280 ~~~aD~il~V~D~s~~~s-~~~~--~l~~~~~------~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLT-KDDF--LIIDLNK------SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HhhCCEEEEEEECCCCCC-hhHH--HHHHHhh------CCCCEEEEEECccCCCc
Confidence 788999999999988654 3332 4443321 23899999999999643
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=163.02 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=107.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeEE--EEec--CceEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVGN--FTYE--KKNIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
.+.++|+++|+.++|||||+++|....+.... .|....... +..+ +..+.+||||||+.|.. ++..++..+|
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~-mr~rg~~~aD 320 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSS-MRSRGANVTD 320 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHH-HHHHHHHHCC
Confidence 45679999999999999999999987664322 222222222 3332 35899999999999998 6888889999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++|+|+|+.+... .+..+.+..+.. .++|+++++||+|+.... ...+...+.. ... ..
T Consensus 321 iaILVVDA~dGv~--~QT~E~I~~~k~------~~iPiIVViNKiDl~~~~-~e~v~~eL~~-~~l---l~--------- 378 (742)
T CHL00189 321 IAILIIAADDGVK--PQTIEAINYIQA------ANVPIIVAINKIDKANAN-TERIKQQLAK-YNL---IP--------- 378 (742)
T ss_pred EEEEEEECcCCCC--hhhHHHHHHHHh------cCceEEEEEECCCccccC-HHHHHHHHHH-hcc---ch---------
Confidence 9999999987432 233333333321 238999999999997532 2222222221 000 00
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..+..++++++||++|+| +++|+++|..
T Consensus 379 -----------------e~~g~~vpvv~VSAktG~G---IdeLle~I~~ 407 (742)
T CHL00189 379 -----------------EKWGGDTPMIPISASQGTN---IDKLLETILL 407 (742)
T ss_pred -----------------HhhCCCceEEEEECCCCCC---HHHHHHhhhh
Confidence 0012237899999999999 9999999864
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-21 Score=139.21 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=89.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchh----hhhhhHHHhhhcCCEEEEEEe
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDR----LRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~~~~d~ii~v~d 88 (211)
+|+++|.+|+|||||+|++.+... ... ....+.+... .+|||||... +...+. ..++++|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~-----~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LAR-----KTQAVEFNDK--GDIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCc-----cceEEEECCC--CcccCCccccCCHHHHHHHH-HHHhcCCEEEEEEe
Confidence 799999999999999999876432 111 1222333333 3799999832 222122 23678999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+++..+.. ..++..+. .++|+++++||+|+.+. ......+. +..
T Consensus 74 ~~~~~s~~---~~~~~~~~-------~~~~ii~v~nK~Dl~~~-~~~~~~~~----~~~--------------------- 117 (158)
T PRK15467 74 ANDPESRL---PAGLLDIG-------VSKRQIAVISKTDMPDA-DVAATRKL----LLE--------------------- 117 (158)
T ss_pred CCCccccc---CHHHHhcc-------CCCCeEEEEEccccCcc-cHHHHHHH----HHH---------------------
Confidence 98765421 12222221 13799999999999642 22221211 110
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+....+++++||++|+| +++++++|.+
T Consensus 118 ------------~~~~~p~~~~Sa~~g~g---i~~l~~~l~~ 144 (158)
T PRK15467 118 ------------TGFEEPIFELNSHDPQS---VQQLVDYLAS 144 (158)
T ss_pred ------------cCCCCCEEEEECCCccC---HHHHHHHHHH
Confidence 01114789999999999 9999999876
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=153.45 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=103.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCc-eEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKK-NIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..|+++|.+|||||||+|+|++.+. ...+ +|..+..+.+.+.+. .+.++||||... ....+. ..+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l-~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFL-KHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHH-HHHHhC
Confidence 3799999999999999999998664 3334 355567777888764 699999999743 222233 346779
Q ss_pred CEEEEEEeCCCc--hhhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTV--QKTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++++|+|++.. ...+.....++..+... ..+.. .|+++|+||+|+.......+....+.+.+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~--kP~IlVlNKiDl~~~~el~~~l~~l~~~~------------ 304 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAE--KPRWLVFNKIDLLDEEEAEERAKAIVEAL------------ 304 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcC--CCEEEEEeCCccCChHHHHHHHHHHHHHh------------
Confidence 999999998721 12234444443333321 11223 89999999999975432221111111100
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++.+||++++| +++|+++|.+
T Consensus 305 ------------------------~~~~~Vi~ISA~tg~G---IdeLl~~I~~ 330 (390)
T PRK12298 305 ------------------------GWEGPVYLISAASGLG---VKELCWDLMT 330 (390)
T ss_pred ------------------------CCCCCEEEEECCCCcC---HHHHHHHHHH
Confidence 1113568899999999 9999999865
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=162.10 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=106.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccc---cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK---YFESC---TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~---~~~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.|+++|++++|||||+++|++.. +.... .|+......+.+++..+.+||+||++.|..+ +..++.++|++++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~-~~~g~~~aD~aIL 79 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN-AIAGGGGIDAALL 79 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH-HHhhhccCCEEEE
Confidence 468999999999999999999633 22221 2334444557777789999999999999884 5666788999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|+++.. ..+..+.+.. +.. . ++| +++|+||+|+.+........+.+.+.+....
T Consensus 80 VVDa~~G~--~~qT~ehl~i-l~~---l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~--------------- 136 (581)
T TIGR00475 80 VVDADEGV--MTQTGEHLAV-LDL---L--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI--------------- 136 (581)
T ss_pred EEECCCCC--cHHHHHHHHH-HHH---c--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC---------------
Confidence 99998732 2333333322 221 1 277 9999999999754332222333332222100
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++++||++|+| +++++++|.+
T Consensus 137 ----------------~~~~~~ii~vSA~tG~G---I~eL~~~L~~ 163 (581)
T TIGR00475 137 ----------------FLKNAKIFKTSAKTGQG---IGELKKELKN 163 (581)
T ss_pred ----------------CCCCCcEEEEeCCCCCC---chhHHHHHHH
Confidence 01136889999999999 9999998864
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=138.82 Aligned_cols=130 Identities=14% Similarity=0.209 Sum_probs=96.4
Q ss_pred cccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcC
Q psy1914 35 KYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILAD 109 (211)
Q Consensus 35 ~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 109 (211)
.|.+.+ ||++..+.. +.+++. .+.+|||||++.+.. ++..+++++|++|+|||++++.+ ++.+..|+..++..
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~-~~~~~~~~ad~~ilv~D~t~~~s-f~~~~~w~~~i~~~ 81 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRS-LIPSYIRDSAAAIVVYDITNRQS-FENTTKWIQDILNE 81 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhh-ccHHHhCCCcEEEEEEECCCHHH-HHHHHHHHHHHHHh
Confidence 455554 777766543 556554 889999999999998 78899999999999999999665 88888888887754
Q ss_pred cCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEE
Q psy1914 110 PQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFC 188 (211)
Q Consensus 110 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (211)
.. .++|+++|+||+||...+..... ...+.. .....++
T Consensus 82 ~~---~~~piilVgNK~DL~~~~~v~~~e~~~~~~--------------------------------------~~~~~~~ 120 (176)
T PTZ00099 82 RG---KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ--------------------------------------EYNTMFH 120 (176)
T ss_pred cC---CCCeEEEEEECcccccccCCCHHHHHHHHH--------------------------------------HcCCEEE
Confidence 31 34899999999999754332211 111111 1125789
Q ss_pred EEeeecCCCccchHHHHHHHhh
Q psy1914 189 DTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 189 ~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+|||++|+| ++++++||.+
T Consensus 121 e~SAk~g~n---V~~lf~~l~~ 139 (176)
T PTZ00099 121 ETSAKAGHN---IKVLFKKIAA 139 (176)
T ss_pred EEECCCCCC---HHHHHHHHHH
Confidence 999999999 9999999975
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=150.20 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=99.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc--c-ccceeeEE-EEecCceEEEEECCCchhhhhh-------hHHHhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC--T-SLKENVGN-FTYEKKNIKIVDLPGEDRLRNK-------FFDQYKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~-t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~ 78 (211)
+...|+++|++|||||||+|+|++.+..... | |+...... ...++..+.+|||||....... .....+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3456999999999999999999988763322 2 33233333 3334458999999997443210 2233567
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
++|++++|+|+++.. .....++...+.. .+.|+++|+||+|+.... ......+. .+..
T Consensus 84 ~~D~il~vvd~~~~~---~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~--~~l~~~~~-~l~~----------- 141 (292)
T PRK00089 84 DVDLVLFVVDADEKI---GPGDEFILEKLKK-----VKTPVILVLNKIDLVKDK--EELLPLLE-ELSE----------- 141 (292)
T ss_pred cCCEEEEEEeCCCCC---ChhHHHHHHHHhh-----cCCCEEEEEECCcCCCCH--HHHHHHHH-HHHh-----------
Confidence 899999999998722 2233344444332 238999999999997321 11122221 1110
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......++++||++|+| +++++++|.+
T Consensus 142 ----------------------~~~~~~i~~iSA~~~~g---v~~L~~~L~~ 168 (292)
T PRK00089 142 ----------------------LMDFAEIVPISALKGDN---VDELLDVIAK 168 (292)
T ss_pred ----------------------hCCCCeEEEecCCCCCC---HHHHHHHHHH
Confidence 00125779999999999 9999999875
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=136.83 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=96.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---ccccee-eEEEEecCceEEEEECCCchhhhh-------hhHHHhhhc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKEN-VGNFTYEKKNIKIVDLPGEDRLRN-------KFFDQYKSS 79 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~-~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 79 (211)
..+|+++|++|+|||||++++.+....... .+.... ...+...+..+.+|||||...... ......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999987653222 122111 222333445899999999753221 023345677
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++|+|++++.. ....++...+.. .+.|+++|+||+|+..... ...+.+. .+..
T Consensus 83 ~d~i~~v~d~~~~~~---~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~--~~~~~~~-~~~~------------ 139 (168)
T cd04163 83 VDLVLFVVDASEPIG---EGDEFILELLKK-----SKTPVILVLNKIDLVKDKE--DLLPLLE-KLKE------------ 139 (168)
T ss_pred CCEEEEEEECCCccC---chHHHHHHHHHH-----hCCCEEEEEEchhccccHH--HHHHHHH-HHHh------------
Confidence 999999999988522 122222333221 1289999999999974221 1121111 1110
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++++|+++++| +++++++|.+
T Consensus 140 ---------------------~~~~~~~~~~s~~~~~~---~~~l~~~l~~ 166 (168)
T cd04163 140 ---------------------LGPFAEIFPISALKGEN---VDELLEEIVK 166 (168)
T ss_pred ---------------------ccCCCceEEEEeccCCC---hHHHHHHHHh
Confidence 01125779999999999 9999999976
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=141.57 Aligned_cols=179 Identities=16% Similarity=0.106 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc-----------------c-------ccceee-----------------EEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC-----------------T-------SLKENV-----------------GNFT 51 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~-----------------~-------t~~~~~-----------------~~~~ 51 (211)
||+++|+.++|||||+++|..+.+.... . ..++.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999975542210 0 011110 2233
Q ss_pred ecCceEEEEECCCchhhhhhhHHHhh-hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 52 YEKKNIKIVDLPGEDRLRNKFFDQYK-SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
..+..++++||||++.|......... ..+|++++|+|+..... ....+.+..+.. .++|+++|+||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~------~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA------LNIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH------cCCCEEEEEECccccC
Confidence 44568999999999998774333322 25899999999976432 223333333222 2289999999999975
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 131 AKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
........+.+.+.+................+.. .. . .-....+.++++.+||+||+| +++|+++|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~-~~---~-----~~~~~~~~~pi~~vSavtg~G---i~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVV-LA---A-----SNFSSERIVPIFQVSNVTGEG---LDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeeccccee-eh---h-----hcCCccccCcEEEeeCCCccC---HHHHHHHHHh
Confidence 4444444444444443211111111000000000 00 0 000123447899999999999 9999999976
Q ss_pred C
Q psy1914 211 L 211 (211)
Q Consensus 211 l 211 (211)
|
T Consensus 221 l 221 (224)
T cd04165 221 L 221 (224)
T ss_pred c
Confidence 4
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=157.70 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-----cccceeeEEEEe----------------cCceEEEEECCCchhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-----TSLKENVGNFTY----------------EKKNIKIVDLPGEDRL 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~~ 68 (211)
+.+-|+++|++++|||||+++|.+..+.... .+++........ +...+.+||||||+.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 3567999999999999999999987764332 122222111111 1114889999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.. ++..+++.+|++++|+|+++... .+..+.+..+. . .++|+++++||+|+..
T Consensus 83 ~~-l~~~~~~~aD~~IlVvD~~~g~~--~qt~e~i~~l~-~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TN-LRKRGGALADLAILIVDINEGFK--PQTQEALNILR-M-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred HH-HHHHHHhhCCEEEEEEECCcCCC--HhHHHHHHHHH-H-----cCCCEEEEEECCCccc
Confidence 88 67888899999999999987321 12222222221 1 2389999999999964
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=163.85 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=106.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhhhh---------hhHHHhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRN---------KFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~ 77 (211)
+.++|+++|++|||||||+|+|++.+. ...+| |.....+.+.+++..+.+|||||+.++.. .....++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 457899999999999999999998654 33444 33344555677777999999999976532 1122232
Q ss_pred --hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 78 --SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 78 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
..+|++++|+|+++.++.. .++..+.+ .++|+++++||+|+.+.+......+.+.+.++
T Consensus 82 ~~~~aD~vI~VvDat~ler~l----~l~~ql~e------~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG--------- 142 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL----YLTLQLLE------LGIPCIVALNMLDIAEKQNIRIDIDALSARLG--------- 142 (772)
T ss_pred hccCCCEEEEEecCCcchhhH----HHHHHHHH------cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC---------
Confidence 3699999999998855422 23333322 23899999999999765554444444544333
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++.+.+
T Consensus 143 -----------------------------~pVvpiSA~~g~G---IdeL~~~I~~ 165 (772)
T PRK09554 143 -----------------------------CPVIPLVSTRGRG---IEALKLAIDR 165 (772)
T ss_pred -----------------------------CCEEEEEeecCCC---HHHHHHHHHH
Confidence 6789999999999 9999998864
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=155.50 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=101.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccccee--eEEEEecCceEEEEECCCchhh----------hhhhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLKEN--VGNFTYEKKNIKIVDLPGEDRL----------RNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~ 75 (211)
..++|+++|.+|+|||||+|+|++... ....+.+... ...+..++..+.+|||||+.+. .......
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 568999999999999999999997653 2333333222 2335667779999999996321 1111223
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
+++.+|++++|+|++++.. .+....+..+.. .++|+++|+||+|+.......+..+.+...+..
T Consensus 252 ~~~~ad~~ilViD~~~~~~--~~~~~i~~~~~~------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~-------- 315 (435)
T PRK00093 252 AIERADVVLLVIDATEGIT--EQDLRIAGLALE------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPF-------- 315 (435)
T ss_pred HHHHCCEEEEEEeCCCCCC--HHHHHHHHHHHH------cCCcEEEEEECccCCCHHHHHHHHHHHHHhccc--------
Confidence 5678999999999988543 222222233222 238999999999997332222222222211110
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|.| ++++++++.+
T Consensus 316 --------------------------~~~~~i~~~SA~~~~g---v~~l~~~i~~ 341 (435)
T PRK00093 316 --------------------------LDYAPIVFISALTGQG---VDKLLEAIDE 341 (435)
T ss_pred --------------------------ccCCCEEEEeCCCCCC---HHHHHHHHHH
Confidence 1126789999999999 9999988764
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=143.71 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=104.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc--cccc-ccceeeEE-EEecCceEEEEECCCchhhhhh-------hHHHhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCT-SLKENVGN-FTYEKKNIKIVDLPGEDRLRNK-------FFDQYKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~-t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~ 78 (211)
+..-|+++|.||||||||+|++++.+.. +..| |+.-.+.. ++.++..+.++||||...-+.. .....+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 3457899999999999999999998863 3333 33334444 5666679999999998543221 1223467
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
++|+++||+|+.+... .-.+++...++. .+.|+++++||+|+...... ....+.+...+.
T Consensus 85 dvDlilfvvd~~~~~~---~~d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~----------- 145 (298)
T COG1159 85 DVDLILFVVDADEGWG---PGDEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP----------- 145 (298)
T ss_pred cCcEEEEEEeccccCC---ccHHHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC-----------
Confidence 7999999999987332 233444444432 22899999999999876552 222222221111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++||++|.| ++.|.+.|.+
T Consensus 146 --------------------------f~~ivpiSA~~g~n---~~~L~~~i~~ 169 (298)
T COG1159 146 --------------------------FKEIVPISALKGDN---VDTLLEIIKE 169 (298)
T ss_pred --------------------------cceEEEeeccccCC---HHHHHHHHHH
Confidence 14779999999999 9999988864
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=161.99 Aligned_cols=142 Identities=22% Similarity=0.325 Sum_probs=100.6
Q ss_pred cCCCCCHHHHHHHHHcCcc-cccccccce--eeEEEEecCceEEEEECCCchhhhhh-----hHHHhh--hcCCEEEEEE
Q psy1914 18 GLSLSGKTLLFARLVYSKY-FESCTSLKE--NVGNFTYEKKNIKIVDLPGEDRLRNK-----FFDQYK--SSAKGIVYVL 87 (211)
Q Consensus 18 G~~~~GKSsli~~l~~~~~-~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~--~~~d~ii~v~ 87 (211)
|++|||||||+|++++... ...+|+++. ....+++++..+.+|||||++++... ....++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998775 444554443 44557778889999999999776431 233343 3689999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|+++.++. ..+...+.. .++|+++|+||+|+.+........+.+.+.++
T Consensus 81 Dat~ler~----l~l~~ql~~------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg--------------------- 129 (591)
T TIGR00437 81 DASNLERN----LYLTLQLLE------LGIPMILALNLVDEAEKKGIRIDEEKLEERLG--------------------- 129 (591)
T ss_pred cCCcchhh----HHHHHHHHh------cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC---------------------
Confidence 99875432 222233322 23899999999999755544333334443332
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 130 -----------------~pvv~tSA~tg~G---i~eL~~~i~~ 152 (591)
T TIGR00437 130 -----------------VPVVPTSATEGRG---IERLKDAIRK 152 (591)
T ss_pred -----------------CCEEEEECCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999864
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-20 Score=131.01 Aligned_cols=155 Identities=19% Similarity=0.298 Sum_probs=120.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccc----------cc---cccceeeEEEEecC-ceEEEEECCCchhhhhhh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFE----------SC---TSLKENVGNFTYEK-KNIKIVDLPGEDRLRNKF 72 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~----------~~---~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~ 72 (211)
......||+++|+.++||||++.+++...... .. .|+...++.+++.+ ..+.++|||||++|.. +
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f-m 84 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF-M 84 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH-H
Confidence 34567899999999999999999999766311 11 34556777778777 5999999999999999 8
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
|.-+.+++.++|+++|.+.+.. + .. ..+..++... .. +|+++++||.||.++..++++.+.+...+.
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~-~-~a-~~ii~f~~~~--~~--ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~------ 151 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPIT-F-HA-EEIIDFLTSR--NP--IPVVVAINKQDLFDALPPEKIREALKLELL------ 151 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcc-h-HH-HHHHHHHhhc--cC--CCEEEEeeccccCCCCCHHHHHHHHHhccC------
Confidence 9999999999999999999765 3 23 3334443321 11 899999999999999999998888774321
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
++++++.+|..++| ..+.++-+.
T Consensus 152 -------------------------------~~~vi~~~a~e~~~---~~~~L~~ll 174 (187)
T COG2229 152 -------------------------------SVPVIEIDATEGEG---ARDQLDVLL 174 (187)
T ss_pred -------------------------------CCceeeeecccchh---HHHHHHHHH
Confidence 17889999999999 777665543
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=154.15 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=99.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc--cccccc--cceeeEEEEecCceEEEEECCCchh--------hhhhhHHHhhhc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY--FESCTS--LKENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQYKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~ 79 (211)
++|+++|.+|||||||+|+|.+... ....|. .......+.+++..+.+|||||+.. +.. ....++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~-~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIRE-QAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHH-HHHHHHHh
Confidence 5899999999999999999998764 334443 3345566788888999999999976 222 23446778
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++|+|++++....+ .++...+.. .++|+++|+||+|+.... ....+ +. .+
T Consensus 81 ad~il~vvd~~~~~~~~~---~~~~~~l~~-----~~~piilv~NK~D~~~~~--~~~~~-~~-~l-------------- 134 (435)
T PRK00093 81 ADVILFVVDGRAGLTPAD---EEIAKILRK-----SNKPVILVVNKVDGPDEE--ADAYE-FY-SL-------------- 134 (435)
T ss_pred CCEEEEEEECCCCCCHHH---HHHHHHHHH-----cCCcEEEEEECccCccch--hhHHH-HH-hc--------------
Confidence 999999999987433222 122222222 138999999999975421 11111 10 00
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+. -.++++||++|.| +++++++|.+
T Consensus 135 ----------------------g~-~~~~~iSa~~g~g---v~~l~~~I~~ 159 (435)
T PRK00093 135 ----------------------GL-GEPYPISAEHGRG---IGDLLDAILE 159 (435)
T ss_pred ----------------------CC-CCCEEEEeeCCCC---HHHHHHHHHh
Confidence 00 1357899999999 9999999864
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=156.36 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=100.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc-------ccccc-c------ccce--e--eEEEEe---cC--ceEEEEECCCchhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK-------YFESC-T------SLKE--N--VGNFTY---EK--KNIKIVDLPGEDRL 68 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~-------~~~~~-~------t~~~--~--~~~~~~---~~--~~~~i~D~~G~~~~ 68 (211)
.+++++|+.++|||||+++|+... +...+ . +.+. . ...+.+ ++ ..+++|||||+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998642 11111 1 1122 2 222334 23 37899999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHH
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLV 148 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 148 (211)
.. .+..+++.+|++|+|+|+++..+ .+.... |..... .++|+++|+||+|+.+.. .....+.+.+.++.
T Consensus 84 ~~-~v~~~l~~aD~aILVvDat~g~~-~qt~~~-~~~~~~------~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~- 152 (595)
T TIGR01393 84 SY-EVSRSLAACEGALLLVDAAQGIE-AQTLAN-VYLALE------NDLEIIPVINKIDLPSAD-PERVKKEIEEVIGL- 152 (595)
T ss_pred HH-HHHHHHHhCCEEEEEecCCCCCC-HhHHHH-HHHHHH------cCCCEEEEEECcCCCccC-HHHHHHHHHHHhCC-
Confidence 88 57888999999999999988543 222222 233322 238999999999997533 22222233222110
Q ss_pred hhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 149 RRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|.| +++++++|.+
T Consensus 153 ----------------------------------~~~~vi~vSAktG~G---I~~Lle~I~~ 177 (595)
T TIGR01393 153 ----------------------------------DASEAILASAKTGIG---IEEILEAIVK 177 (595)
T ss_pred ----------------------------------CcceEEEeeccCCCC---HHHHHHHHHH
Confidence 002478899999999 9999999864
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=161.79 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=102.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCceEEEEECCCchh----------hhhhhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDR----------LRNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~ 75 (211)
..++|+++|.+|||||||+|+|++.+. ....++++ .....+.+++..+.+|||||..+ +.......
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 348999999999999999999998874 34444333 33345678888999999999632 22111123
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
+++.+|++++|+|+++..+ .+. ...+..+.. .++|+++|+||+|+.+...... +++.+...
T Consensus 529 ~i~~advvilViDat~~~s-~~~-~~i~~~~~~------~~~piIiV~NK~DL~~~~~~~~----~~~~~~~~------- 589 (712)
T PRK09518 529 AIERSELALFLFDASQPIS-EQD-LKVMSMAVD------AGRALVLVFNKWDLMDEFRRQR----LERLWKTE------- 589 (712)
T ss_pred HhhcCCEEEEEEECCCCCC-HHH-HHHHHHHHH------cCCCEEEEEEchhcCChhHHHH----HHHHHHHh-------
Confidence 4678999999999988544 222 233333322 2389999999999975332222 22222210
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..+ ...+++.+||++|.| ++++++.+.+
T Consensus 590 ----------------------l~~~-~~~~ii~iSAktg~g---v~~L~~~i~~ 618 (712)
T PRK09518 590 ----------------------FDRV-TWARRVNLSAKTGWH---TNRLAPAMQE 618 (712)
T ss_pred ----------------------ccCC-CCCCEEEEECCCCCC---HHHHHHHHHH
Confidence 0000 114568899999999 9999998764
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=152.30 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc--cccccc--cceeeEEEEecCceEEEEECCCc--------hhhhhhhHHHhhhcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY--FESCTS--LKENVGNFTYEKKNIKIVDLPGE--------DRLRNKFFDQYKSSA 80 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~~~ 80 (211)
+|+++|.+|||||||+|+|++... ....|. .......+.+++..+.+|||||. ..+.. ....+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIRE-QAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHH-HHHHHHhhC
Confidence 589999999999999999998763 334443 33455667788889999999996 33344 355567889
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
|++++|+|+.+...... ..+...++. .++|+++|+||+|+....... ..+. .+.
T Consensus 80 d~vl~vvD~~~~~~~~d---~~i~~~l~~-----~~~piilVvNK~D~~~~~~~~---~~~~-~lg-------------- 133 (429)
T TIGR03594 80 DVILFVVDGREGLTPED---EEIAKWLRK-----SGKPVILVANKIDGKKEDAVA---AEFY-SLG-------------- 133 (429)
T ss_pred CEEEEEEeCCCCCCHHH---HHHHHHHHH-----hCCCEEEEEECccCCcccccH---HHHH-hcC--------------
Confidence 99999999987433121 222333322 238999999999987543211 1111 010
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..++++||++|.| ++++++++.+
T Consensus 134 -----------------------~~~~~~vSa~~g~g---v~~ll~~i~~ 157 (429)
T TIGR03594 134 -----------------------FGEPIPISAEHGRG---IGDLLDAILE 157 (429)
T ss_pred -----------------------CCCeEEEeCCcCCC---hHHHHHHHHH
Confidence 02568899999999 9999998864
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=127.50 Aligned_cols=137 Identities=19% Similarity=0.178 Sum_probs=88.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCch----hhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGED----RLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~~d~ii~v~ 87 (211)
-||+++|+.|||||||+++|.+....... ...+.+.+ .++||||.. .+.+.+ ...-.+||.++++.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K------Tq~i~~~~---~~IDTPGEyiE~~~~y~aL-i~ta~dad~V~ll~ 71 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK------TQAIEYYD---NTIDTPGEYIENPRFYHAL-IVTAQDADVVLLLQ 71 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc------cceeEecc---cEEECChhheeCHHHHHHH-HHHHhhCCEEEEEe
Confidence 37999999999999999999986542221 12233333 359999973 233322 22345699999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC-CCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA-KSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+.+..-. ... - +.|+|-|+||+|+... .+.+... +.+...
T Consensus 72 dat~~~~~~pP~f---a~~------f--~~pvIGVITK~Dl~~~~~~i~~a~----~~L~~a------------------ 118 (143)
T PF10662_consen 72 DATEPRSVFPPGF---ASM------F--NKPVIGVITKIDLPSDDANIERAK----KWLKNA------------------ 118 (143)
T ss_pred cCCCCCccCCchh---hcc------c--CCCEEEEEECccCccchhhHHHHH----HHHHHc------------------
Confidence 9998654331111 111 1 2799999999999832 2222222 223210
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+. -.+|.+|+++|+| +++|.++|.+
T Consensus 119 ---------------G~-~~if~vS~~~~eG---i~eL~~~L~~ 143 (143)
T PF10662_consen 119 ---------------GV-KEIFEVSAVTGEG---IEELKDYLEE 143 (143)
T ss_pred ---------------CC-CCeEEEECCCCcC---HHHHHHHHhC
Confidence 11 2348899999999 9999999975
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-20 Score=154.57 Aligned_cols=150 Identities=23% Similarity=0.338 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhh-----hhhhHHHhh--hc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRL-----RNKFFDQYK--SS 79 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~--~~ 79 (211)
+..+|+++|+||||||||+|+|++.+. ..++| |.....+.+.+++..++++|+||..++ .++..+.|+ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 456799999999999999999998765 77887 455566778899999999999998543 222333443 35
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|+++.|+|+++.++++.-+ .+++. .++|++++.|++|........-..+.+++.+.
T Consensus 82 ~D~ivnVvDAtnLeRnLylt----lQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG------------- 138 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLT----LQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG------------- 138 (653)
T ss_pred CCEEEEEcccchHHHHHHHH----HHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-------------
Confidence 79999999998866544222 23332 33899999999999888777777778888777
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++.+.+
T Consensus 139 -------------------------vPVv~tvA~~g~G---~~~l~~~i~~ 161 (653)
T COG0370 139 -------------------------VPVVPTVAKRGEG---LEELKRAIIE 161 (653)
T ss_pred -------------------------CCEEEEEeecCCC---HHHHHHHHHH
Confidence 8999999999999 9999988764
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=136.18 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--ccc--------------------------------cccccceeeEEEEecCceEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK--YFE--------------------------------SCTSLKENVGNFTYEKKNIK 58 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~~~~~ 58 (211)
||+++|.+|+|||||+++|+... ... ...|.......+.+++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999997532 110 00123333444566777999
Q ss_pred EEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 59 IVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+|||||+..|... ....+..+|++++|+|+++... .+....+. ++.. ... .++++|+||+|+.+.
T Consensus 81 liDTpG~~~~~~~-~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~-~~~~--~~~--~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRN-MVTGASTADLAILLVDARKGVL--EQTRRHSY-ILSL--LGI--RHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHH-HHHhhhhCCEEEEEEECCCCcc--HhHHHHHH-HHHH--cCC--CcEEEEEEchhcccC
Confidence 9999999988764 4556788999999999987432 22222222 2211 111 457889999999753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=150.81 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=78.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--cc--------------------------------ccccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YF--------------------------------ESCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 53 (211)
.+++++|+++|++++|||||+++|+... .. ....|.......++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 5678999999999999999999998321 10 0112344444556667
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+..+.+|||||++.|... ....+..+|++++|+|+++......+..+.+... .. ... .|+++++||+|+.+
T Consensus 83 ~~~i~liDtpG~~~~~~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~--~~~--~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKN-MITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RT--LGI--NQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEECCCcccchhh-HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HH--cCC--CeEEEEEEcccccc
Confidence 779999999999888764 3344677999999999987211112222222222 11 111 46999999999975
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-20 Score=126.67 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-c--cccccc--eeeEEEEecC--ceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF-E--SCTSLK--ENVGNFTYEK--KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~-~--~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
||+++|++|||||||+++|++..+. . ..++.+ .......... ..+.+||++|++.+.. .+..++..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS-QHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC-TSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc-cccchhhcCcEEEE
Confidence 7999999999999999999988876 1 112222 2222233332 3689999999988877 45556888999999
Q ss_pred EEeCCCchhhHHHHHHH---HHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 86 VLDSSTVQKTLRDVAES---LYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
|||++++.+ +..+.++ +..+.. ...++|+++|+||.|
T Consensus 80 v~D~s~~~s-~~~~~~~~~~l~~~~~----~~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPES-LEYLSQLLKWLKNIRK----RDKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHH-HHHHHHHHHHHHHHHH----HSSCSEEEEEEE-TC
T ss_pred EEcCCChHH-HHHHHHHHHHHHHHHc----cCCCCCEEEEEeccC
Confidence 999999664 6666444 444432 123499999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-19 Score=131.21 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--------cc-----------ccccccceeeEEEEecCceEEEEECCCchhhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK--------YF-----------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~--------~~-----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
++++|+++|..++|||||+++|+... .. ....|.......++.++..+.++||||+..|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 35799999999999999999998531 00 001122222333455566899999999998877
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
. ....+..+|++++|+|+..... .+..+.+..+.. .++| +++++||+|+..
T Consensus 81 ~-~~~~~~~~D~~ilVvda~~g~~--~~~~~~~~~~~~------~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 81 N-MITGAAQMDGAILVVSATDGPM--PQTREHLLLARQ------VGVPYIVVFLNKADMVD 132 (195)
T ss_pred H-HHHHhhhCCEEEEEEECCCCCc--HHHHHHHHHHHH------cCCCcEEEEEeCCCCCC
Confidence 4 4556677999999999976322 333334443322 1266 789999999963
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=128.08 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=97.7
Q ss_pred EEcCCCCCHHHHHHHHHcCccccc--cc--ccceeeEEEEec-CceEEEEECCCchhhhh------hhHHHhhhcCCEEE
Q psy1914 16 LSGLSLSGKTLLFARLVYSKYFES--CT--SLKENVGNFTYE-KKNIKIVDLPGEDRLRN------KFFDQYKSSAKGIV 84 (211)
Q Consensus 16 i~G~~~~GKSsli~~l~~~~~~~~--~~--t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~------~~~~~~~~~~d~ii 84 (211)
++|++|||||||++++++...... .+ +.........+. ...+.+||+||+..... .....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999998654321 12 222333334444 45899999999865432 13444678899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++....... ++..... .+.|+++|+||+|+............... ..
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~~~~------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~------------------ 133 (163)
T cd00880 81 FVVDADLRADEEEEK--LLELLRE------RGKPVLLVLNKIDLLPEEEEEELLELRLL-IL------------------ 133 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHHHHh------cCCeEEEEEEccccCChhhHHHHHHHHHh-hc------------------
Confidence 999999865422222 2222211 23899999999999865443322110000 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......+++++||+++.| ++++++||.+
T Consensus 134 ---------------~~~~~~~~~~~sa~~~~~---v~~l~~~l~~ 161 (163)
T cd00880 134 ---------------LLLLGLPVIAVSALTGEG---IDELREALIE 161 (163)
T ss_pred ---------------ccccCCceEEEeeeccCC---HHHHHHHHHh
Confidence 012347889999999999 9999999976
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=144.09 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=107.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc--cccc--ccceeeEEEEecCceEEEEECCCchh----------hhhhhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCT--SLKENVGNFTYEKKNIKIVDLPGEDR----------LRNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~ 75 (211)
..+||+++|.||+|||||+|+|++.+-. ...+ |...-...+++++..+.++||+|..+ |...-...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4599999999999999999999987743 3332 33344455888899999999999732 22212233
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC--CHHHHHHHHHHHHHHHhhhcc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK--SSSVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~ 153 (211)
....+|++++|+|++.+-+ +....+..+..+ .+.++++|+||+|+.+.. ...+....+..++.++
T Consensus 257 aI~~a~vvllviDa~~~~~---~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l----- 323 (444)
T COG1160 257 AIERADVVLLVIDATEGIS---EQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL----- 323 (444)
T ss_pred HHhhcCEEEEEEECCCCch---HHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc-----
Confidence 4667999999999988543 222223333322 338999999999998762 2333333444333311
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.-.+++.+||++|.| +.++++.+.+
T Consensus 324 -----------------------------~~a~i~~iSA~~~~~---i~~l~~~i~~ 348 (444)
T COG1160 324 -----------------------------DFAPIVFISALTGQG---LDKLFEAIKE 348 (444)
T ss_pred -----------------------------cCCeEEEEEecCCCC---hHHHHHHHHH
Confidence 115778899999999 9999998865
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=146.33 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=104.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCceEEEEECCCchhhhh-------hhHHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRN-------KFFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~ 77 (211)
+..+|++++|.||+|||||+|+|++.+. +...|.+ ..-...+.++|.++.++||+|.+.-.. +.....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 5689999999999999999999998774 4444433 344556899999999999999843211 1123346
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.||.+++|+|++.+.. +....+... ...+.|+++|.||.||......... .
T Consensus 295 ~~ADlvL~v~D~~~~~~---~~d~~~~~~------~~~~~~~i~v~NK~DL~~~~~~~~~--~----------------- 346 (454)
T COG0486 295 EEADLVLFVLDASQPLD---KEDLALIEL------LPKKKPIIVVLNKADLVSKIELESE--K----------------- 346 (454)
T ss_pred HhCCEEEEEEeCCCCCc---hhhHHHHHh------cccCCCEEEEEechhcccccccchh--h-----------------
Confidence 77999999999988522 111111221 1133899999999999866542211 0
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+....+++.+||+||+| ++.|.+.|.+
T Consensus 347 -----------------------~~~~~~~i~iSa~t~~G---l~~L~~~i~~ 373 (454)
T COG0486 347 -----------------------LANGDAIISISAKTGEG---LDALREAIKQ 373 (454)
T ss_pred -----------------------ccCCCceEEEEecCccC---HHHHHHHHHH
Confidence 01124678899999999 9999988865
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=147.85 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=100.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc---c---ccccceeeEE--------------EEe------------cCce
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE---S---CTSLKENVGN--------------FTY------------EKKN 56 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~---~---~~t~~~~~~~--------------~~~------------~~~~ 56 (211)
.++++|+++|..++|||||+++|.+..... . ..|+...+.. ++. .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567899999999999999999997532211 0 0111111000 101 1347
Q ss_pred EEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH
Q psy1914 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV 136 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 136 (211)
+.+||||||+.|..+ +......+|++++|+|+++... ..+..+.+..+.. ... .|+++|+||+|+.+.....+
T Consensus 82 i~liDtPGh~~f~~~-~~~g~~~aD~aIlVVDa~~g~~-~~qt~e~l~~l~~---~gi--~~iIVvvNK~Dl~~~~~~~~ 154 (406)
T TIGR03680 82 VSFVDAPGHETLMAT-MLSGAALMDGALLVIAANEPCP-QPQTKEHLMALEI---IGI--KNIVIVQNKIDLVSKEKALE 154 (406)
T ss_pred EEEEECCCHHHHHHH-HHHHHHHCCEEEEEEECCCCcc-ccchHHHHHHHHH---cCC--CeEEEEEEccccCCHHHHHH
Confidence 999999999999885 5556667999999999986421 1233333332211 111 47899999999975432222
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 137 VKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+.+.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 155 ~~~~i~~~l~~-----------~---------------------~~~~~~ii~vSA~~g~g---i~~L~e~L~~ 193 (406)
T TIGR03680 155 NYEEIKEFVKG-----------T---------------------VAENAPIIPVSALHNAN---IDALLEAIEK 193 (406)
T ss_pred HHHHHHhhhhh-----------c---------------------ccCCCeEEEEECCCCCC---hHHHHHHHHH
Confidence 22222211110 0 01126889999999999 9999999975
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=145.37 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=103.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecCceEEEEECCCchhhh-----hhh---HHHhhhc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLR-----NKF---FDQYKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~---~~~~~~~ 79 (211)
..|+++|.||||||||+|||++.+. .+++| |....++...+.+..+.++||+|.+... .++ ....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 6799999999999999999998774 45554 5556778899999999999999985321 111 2334667
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
||++|||+|+...- ....+.+..++.. .++|+++|+||+|-.... .....+.+ +.
T Consensus 84 ADvilfvVD~~~Gi---t~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~e---~~~~efys-lG------------- 138 (444)
T COG1160 84 ADVILFVVDGREGI---TPADEEIAKILRR-----SKKPVILVVNKIDNLKAE---ELAYEFYS-LG------------- 138 (444)
T ss_pred CCEEEEEEeCCCCC---CHHHHHHHHHHHh-----cCCCEEEEEEcccCchhh---hhHHHHHh-cC-------------
Confidence 99999999996632 2333444444432 238999999999976221 11111211 11
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. -..+.+||..|.| +.+|++.+.+
T Consensus 139 -----------------------~-g~~~~ISA~Hg~G---i~dLld~v~~ 162 (444)
T COG1160 139 -----------------------F-GEPVPISAEHGRG---IGDLLDAVLE 162 (444)
T ss_pred -----------------------C-CCceEeehhhccC---HHHHHHHHHh
Confidence 0 2447799999999 9999998875
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-19 Score=151.54 Aligned_cols=152 Identities=16% Similarity=0.237 Sum_probs=101.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cc-----cc----c-------cccceeeEEEEec-----CceEEEEECCCchh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK--YF-----ES----C-------TSLKENVGNFTYE-----KKNIKIVDLPGEDR 67 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~--~~-----~~----~-------~t~~~~~~~~~~~-----~~~~~i~D~~G~~~ 67 (211)
-.+++++|+.++|||||+.+|+... .. .. . .|+......+.+. +..+++|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3589999999999999999998521 11 00 0 1222222334443 23799999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
|.. .+..+++.+|++|+|+|+++... . +....+..... .++|+++|+||+|+.+.. .....+.+.+.+..
T Consensus 87 F~~-~v~~sl~~aD~aILVVDas~gv~-~-qt~~~~~~~~~------~~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~ 156 (600)
T PRK05433 87 FSY-EVSRSLAACEGALLVVDASQGVE-A-QTLANVYLALE------NDLEIIPVLNKIDLPAAD-PERVKQEIEDVIGI 156 (600)
T ss_pred HHH-HHHHHHHHCCEEEEEEECCCCCC-H-HHHHHHHHHHH------CCCCEEEEEECCCCCccc-HHHHHHHHHHHhCC
Confidence 988 58888999999999999988543 2 22223333322 238999999999996543 22222233221110
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++.+||++|.| +++|+++|.+
T Consensus 157 -----------------------------------~~~~vi~iSAktG~G---I~~Ll~~I~~ 181 (600)
T PRK05433 157 -----------------------------------DASDAVLVSAKTGIG---IEEVLEAIVE 181 (600)
T ss_pred -----------------------------------CcceEEEEecCCCCC---HHHHHHHHHH
Confidence 002478999999999 9999999864
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=157.10 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=99.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccce--eeEEEEecCceEEEEECCCchh--------hhhhhHHHh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLKE--NVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQY 76 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 76 (211)
....+|+++|.+|||||||+|+|++... ....|.++. .....++++..+.+|||||... +.. ....+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~-~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIAS-QAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHH-HHHHH
Confidence 4457899999999999999999998764 333343332 2233566777999999999753 333 24456
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
++.+|++++|+|+++... .....+...+.. .++|+++|+||+|+..... ...+... +
T Consensus 352 ~~~aD~iL~VvDa~~~~~---~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~--~~~~~~~--l----------- 408 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLT---STDERIVRMLRR-----AGKPVVLAVNKIDDQASEY--DAAEFWK--L----------- 408 (712)
T ss_pred HHhCCEEEEEEECCCCCC---HHHHHHHHHHHh-----cCCCEEEEEECcccccchh--hHHHHHH--c-----------
Confidence 788999999999976322 222233333332 2389999999999864311 1111000 0
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.. ..+++||++|.| +++|+++|.+
T Consensus 409 -------------------------g~~-~~~~iSA~~g~G---I~eLl~~i~~ 433 (712)
T PRK09518 409 -------------------------GLG-EPYPISAMHGRG---VGDLLDEALD 433 (712)
T ss_pred -------------------------CCC-CeEEEECCCCCC---chHHHHHHHH
Confidence 001 235799999999 9999999875
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=147.74 Aligned_cols=117 Identities=20% Similarity=0.230 Sum_probs=78.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--cccc--------------------------------cccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--KYFE--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.++.++|+++|+.++|||||+++|+.. .... ...|.......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 567899999999999999999999852 1110 012233333445666
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhH-HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTL-RDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+..+.+||||||+.|... ....+..+|++++|+|+++.+... .+...++. +... ... .|+++|+||+|+.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~--~~~--~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKN-MITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LART--LGI--NQLIVAINKMDSVN 155 (426)
T ss_pred CeEEEEEECCCHHHHHHH-HHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHH--cCC--CeEEEEEEChhccC
Confidence 679999999999988774 444567899999999998853211 11222211 2211 112 57999999999974
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-20 Score=133.94 Aligned_cols=118 Identities=13% Similarity=0.170 Sum_probs=97.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEe--cCceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTY--EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
-+|++++|+.++||||+++++|.+-|...+ .|++...- .+.+ ++..+.+||++|++.+.. +...|++++.+.++
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDa-ItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDA-ITKAYYRGAQASVL 98 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHH-HHHHHhccccceEE
Confidence 479999999999999999999999998877 46554332 2333 334778999999999999 89999999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
||..+|..+ |+.+.+|..++.+. ..+ +|.++|-||+||.+....
T Consensus 99 VFSTTDr~S-Fea~~~w~~kv~~e--~~~--IPtV~vqNKIDlveds~~ 142 (246)
T KOG4252|consen 99 VFSTTDRYS-FEATLEWYNKVQKE--TER--IPTVFVQNKIDLVEDSQM 142 (246)
T ss_pred EEecccHHH-HHHHHHHHHHHHHH--hcc--CCeEEeeccchhhHhhhc
Confidence 999999766 98999888887653 233 999999999999876543
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-19 Score=151.24 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=101.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---cccc---ccccceeeEEEEe-cCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK---YFES---CTSLKENVGNFTY-EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~---~~~~---~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+-|+++|+.++|||||+++|++.. +... ..|+...+..+.. ++..+.+||||||++|..+ ....+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~-m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN-MLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH-HHHHhhcCCEEE
Confidence 358999999999999999998633 2222 2344333334433 3458899999999999875 445577899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|+.+.. ..+..+.+. ++.. .++| +++|+||+|+.+........+.+.+.+... .
T Consensus 80 LVVda~eg~--~~qT~ehl~-il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~------~-------- 137 (614)
T PRK10512 80 LVVACDDGV--MAQTREHLA-ILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREY------G-------- 137 (614)
T ss_pred EEEECCCCC--cHHHHHHHH-HHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc------C--------
Confidence 999997632 233444433 2221 1145 579999999975333333333333222110 0
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++|+++|.+
T Consensus 138 ------------------~~~~~ii~VSA~tG~g---I~~L~~~L~~ 163 (614)
T PRK10512 138 ------------------FAEAKLFVTAATEGRG---IDALREHLLQ 163 (614)
T ss_pred ------------------CCCCcEEEEeCCCCCC---CHHHHHHHHH
Confidence 0125789999999999 9999999875
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=135.93 Aligned_cols=90 Identities=24% Similarity=0.298 Sum_probs=65.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchhhh-------hhhHHHhhhcCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLR-------NKFFDQYKSSAK 81 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~d 81 (211)
.+|+++|++|||||||+++|++... ...+ +|..+..+.+.+++..+.+||+||+.... . ....+++++|
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~-~~l~~~~~ad 79 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGR-QVIAVARTAD 79 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHH-HHHHhhccCC
Confidence 3799999999999999999998653 2333 34456667788888899999999984322 2 1334678899
Q ss_pred EEEEEEeCCCchhhHHHHHHH
Q psy1914 82 GIVYVLDSSTVQKTLRDVAES 102 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~ 102 (211)
++++|+|++++......+.+.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~ 100 (233)
T cd01896 80 LILMVLDATKPEGHREILERE 100 (233)
T ss_pred EEEEEecCCcchhHHHHHHHH
Confidence 999999998755434333333
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-19 Score=136.97 Aligned_cols=183 Identities=15% Similarity=0.178 Sum_probs=114.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc--------c-----ccc--------cccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY--------F-----ESC--------TSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~--------~-----~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|+.|+|||||+++|+...- . .++ .|+......+.+++..+++|||||+..|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~- 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA- 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH-
Confidence 489999999999999999985310 0 000 122334455677778999999999999888
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhh
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
.+..+++.+|++++|+|+++... .+...++..... .++|+++++||+|+.+.. .....+.+.+.+..-...
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~--~~~~~~~~~~~~------~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~~~~~ 150 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQ--AQTRILWRLLRK------LNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSSDIVP 150 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEECccccCCC-HHHHHHHHHHHHCCCeEE
Confidence 47778899999999999987433 234444443322 238999999999998653 344555555555421110
Q ss_pred c-ccc-------cccc----------hhhcccccccCCCCCCeeecCC----------CCcEEEEEEeeecCCCccchHH
Q psy1914 152 K-SNQ-------LEDT----------NDVAANQTFLGNPDKDFEFSDL----------YNQVSFCDTTGLDSASEYDVEQ 203 (211)
Q Consensus 152 ~-~~~-------~~~~----------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~tg~g~~~i~~ 203 (211)
. ... .... .+++....+++ ++.++-+++ ..-++++..||.++.| +.+
T Consensus 151 ~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~--~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~G---v~~ 225 (237)
T cd04168 151 MQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLE--GGPIEELELDNELSARIAKRKVFPVYHGSALKGIG---IEE 225 (237)
T ss_pred EECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcC---HHH
Confidence 0 000 0000 00000111111 122221111 2458889999999999 999
Q ss_pred HHHHHhh
Q psy1914 204 LQDWMVT 210 (211)
Q Consensus 204 l~~~i~~ 210 (211)
|++.|.+
T Consensus 226 ll~~~~~ 232 (237)
T cd04168 226 LLEGITK 232 (237)
T ss_pred HHHHHHH
Confidence 9999875
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=133.59 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--cc------------------------ccc--------cccceeeEEEEecCceEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK--YF------------------------ESC--------TSLKENVGNFTYEKKNIK 58 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~--~~------------------------~~~--------~t~~~~~~~~~~~~~~~~ 58 (211)
+|+++|+.++|||||+.+|+... .. .+. .|.......+++++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999996311 00 000 122233445667778999
Q ss_pred EEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchh-----hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 59 IVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQK-----TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+|||||+..+... +...+..+|++++|+|+++... ...+....+..... ... .|+++++||+|+...
T Consensus 81 liDtpG~~~~~~~-~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~iiivvNK~Dl~~~ 152 (219)
T cd01883 81 ILDAPGHRDFVPN-MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART---LGV--KQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCChHHHHHH-HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH---cCC--CeEEEEEEccccccc
Confidence 9999999888774 5556677999999999987410 01122222222211 122 689999999999743
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=148.84 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=75.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccccc-----ccceeeEEEEe---------c-------CceEEEEECCCch
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCT-----SLKENVGNFTY---------E-------KKNIKIVDLPGED 66 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-----t~~~~~~~~~~---------~-------~~~~~i~D~~G~~ 66 (211)
..+.+.|+++|++++|||||+++|.+.......+ +++........ . -..+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3456789999999999999999998655432221 22222111111 0 0137899999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
.|.. ++...+..+|++++|+|+++... .+....+..+ .. .++|+++++||+|+.
T Consensus 83 ~f~~-~~~~~~~~aD~~IlVvDa~~g~~--~qt~e~i~~~-~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTN-LRKRGGALADIAILVVDINEGFQ--PQTIEAINIL-KR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHH-HHHHhHhhCCEEEEEEECCCCCC--HhHHHHHHHH-HH-----cCCCEEEEEECcCCc
Confidence 9988 67777788999999999987211 2222222222 11 238999999999985
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=144.52 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=100.1
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccc---c---cccccceeeEEEEe------------------c-------
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYF---E---SCTSLKENVGNFTY------------------E------- 53 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~---~---~~~t~~~~~~~~~~------------------~------- 53 (211)
+.+.+++++|+++|+.++|||||+.+|.+.... . ...|+........+ +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 456788999999999999999999999653111 0 01122211111111 1
Q ss_pred -CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 54 -KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 54 -~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
...+++|||||++.|... .......+|++++|+|++++.. ..+..+.+..+. . ... .|+++|+||+|+.+..
T Consensus 83 ~~~~i~liDtPG~~~f~~~-~~~~~~~~D~~llVVDa~~~~~-~~~t~~~l~~l~-~--~~i--~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMAT-MLSGAALMDGAILVIAANEPCP-QPQTKEHLMALD-I--IGI--KNIVIVQNKIDLVSKE 155 (411)
T ss_pred cccEEEEEECCCHHHHHHH-HHHHHhhCCEEEEEEECCCCCC-ChhHHHHHHHHH-H--cCC--CcEEEEEEeeccccch
Confidence 247899999999988774 3333456899999999986421 122222222221 1 111 4689999999997543
Q ss_pred CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 133 SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......+.+...+.. . ....++++++||++|+| +++|+++|.+
T Consensus 156 ~~~~~~~~i~~~l~~---~-----------------------------~~~~~~ii~vSA~~g~g---I~~L~~~L~~ 198 (411)
T PRK04000 156 RALENYEQIKEFVKG---T-----------------------------VAENAPIIPVSALHKVN---IDALIEAIEE 198 (411)
T ss_pred hHHHHHHHHHHHhcc---c-----------------------------cCCCCeEEEEECCCCcC---HHHHHHHHHH
Confidence 222112222211110 0 01126889999999999 9999999875
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=147.10 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--Cccccc-----------------ccccceeeEEEEecCceEEEEECCCchhhhhhhH
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY--SKYFES-----------------CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~--~~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 73 (211)
+|+++|+.++|||||+++|+. +.+... ..|+......+.+++..+++||||||.+|.. .+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~-ev 81 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGG-EV 81 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHH-HH
Confidence 699999999999999999985 222111 1233334456788888999999999999988 47
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcc
Q psy1914 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 153 (211)
..+++.+|++++|+|+.+.. ..+...+|..+.. .++|+++|+||+|+.+.+. .++.+.+...+.....
T Consensus 82 ~~~l~~aD~alLVVDa~~G~--~~qT~~~l~~a~~------~~ip~IVviNKiD~~~a~~-~~v~~ei~~l~~~~g~--- 149 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP--MPQTRFVLKKALE------LGLKPIVVINKIDRPSARP-DEVVDEVFDLFAELGA--- 149 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC--cHHHHHHHHHHHH------CCCCEEEEEECCCCCCcCH-HHHHHHHHHHHHhhcc---
Confidence 78889999999999998732 4556666666554 2389999999999975543 2233333333321100
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCC----------CccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSA----------SEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~----------g~~~i~~l~~~i~~ 210 (211)
+. ++ ..++++.+||++|. | +++|++.|.+
T Consensus 150 ------~~-----------------e~--l~~pvl~~SA~~g~~~~~~~~~~~g---i~~Lld~Iv~ 188 (594)
T TIGR01394 150 ------DD-----------------EQ--LDFPIVYASGRAGWASLDLDDPSDN---MAPLFDAIVR 188 (594)
T ss_pred ------cc-----------------cc--ccCcEEechhhcCcccccCcccccC---HHHHHHHHHH
Confidence 00 01 12578999999995 7 8888887764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-18 Score=122.78 Aligned_cols=152 Identities=20% Similarity=0.298 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc-ccccccee--eEEEEecCceEEEEECCCchh----------hhhhhHHHhhh-
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKEN--VGNFTYEKKNIKIVDLPGEDR----------LRNKFFDQYKS- 78 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~~- 78 (211)
.|+++|.+|+|||||++++.++.+.. ..++.+.. ...+..++ .+.+|||||... +.. ....++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 78 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGK-LIEEYLEN 78 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHH-HHHHHHHh
Confidence 37999999999999999999654432 22333322 22233332 899999999532 333 3344444
Q ss_pred --cCCEEEEEEeCCCchhhH-HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 79 --SAKGIVYVLDSSTVQKTL-RDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 79 --~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
..+.+++++|........ .....++.. .+.|+++|+||+|+............+...+..
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-------- 141 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEE---------LGIPFLVVLTKADKLKKSELAKALKEIKKELKL-------- 141 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh--------
Confidence 357888999987643212 222233222 128999999999996443333222233222210
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
.....+++++||+++.| +++++++|.++
T Consensus 142 -------------------------~~~~~~~~~~Sa~~~~~---~~~l~~~l~~~ 169 (170)
T cd01876 142 -------------------------FEIDPPIILFSSLKGQG---IDELRALIEKW 169 (170)
T ss_pred -------------------------ccCCCceEEEecCCCCC---HHHHHHHHHHh
Confidence 01225778999999999 99999999763
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-18 Score=145.70 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=84.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc--Ccccccc-----------------cccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY--SKYFESC-----------------TSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~--~~~~~~~-----------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
-.+|+++|+.++|||||+++|+. +.+.... .|+......+.+++..+++|||||+..|..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~- 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG- 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH-
Confidence 35899999999999999999996 3332211 122223344567777999999999999998
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
.+..+++.+|++++|+|+.+.. ..+....+..... .++|.++++||+|+.+++..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~--~~qt~~~l~~a~~------~gip~IVviNKiD~~~a~~~ 138 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGP--MPQTRFVTKKAFA------YGLKPIVVINKVDRPGARPD 138 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCc--cHHHHHHHHHHHH------cCCCEEEEEECcCCCCCchh
Confidence 5888899999999999998743 2344444554443 23899999999999865543
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-17 Score=120.74 Aligned_cols=157 Identities=18% Similarity=0.307 Sum_probs=105.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccccceeeEEEEecCceEEEEECCCc----------hhhhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY---FESCTSLKENVGNFTYEKKNIKIVDLPGE----------DRLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~ 75 (211)
....-|+++|.+|||||||+|+|++.+- ++..|..+.....+.+++. +.++|.||. +.+.. +...
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~-~i~~ 99 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKK-LIEE 99 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHH-HHHH
Confidence 3457899999999999999999999663 3444555555566666664 889999996 23333 4455
Q ss_pred hhh---cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy1914 76 YKS---SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 76 ~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
|++ +-.++++++|+..+.. .......+++.. .++|+++++||+|.....+.......+.+.+..
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~---~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~----- 166 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPK---DLDREMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK----- 166 (200)
T ss_pred HHhhchhheEEEEEEECCCCCc---HHHHHHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC-----
Confidence 654 3577888899977443 222333444433 239999999999998776554444444433331
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++...++..|+.++.| ++++.+.|.+
T Consensus 167 ---------------------------~~~~~~~~~~~ss~~k~G---i~~l~~~i~~ 194 (200)
T COG0218 167 ---------------------------PPPDDQWVVLFSSLKKKG---IDELKAKILE 194 (200)
T ss_pred ---------------------------CCCccceEEEEecccccC---HHHHHHHHHH
Confidence 011122278899999999 9999987754
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=132.30 Aligned_cols=154 Identities=23% Similarity=0.306 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCc-eEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKK-NIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
..+.++|.||+|||||++++...+. ...| +|..+.++.+.+++. .+.+-|.||.-. .-.++.. .++.|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr-HiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR-HIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHH-HHHhh
Confidence 4678999999999999999998775 4555 466677788888887 699999999732 1222333 34669
Q ss_pred CEEEEEEeCCCch--hhHHHHHHHHHHHHc-CcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTVQ--KTLRDVAESLYVILA-DPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.++||+|.+.+. +..++....+.++-. ...+.+ .|.++|+||+|+++... ...+.+.+.+..
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~--rp~liVaNKiD~~eae~--~~l~~L~~~lq~---------- 341 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLAD--RPALIVANKIDLPEAEK--NLLSSLAKRLQN---------- 341 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhcc--CceEEEEeccCchhHHH--HHHHHHHHHcCC----------
Confidence 9999999998751 224444443333321 223444 89999999999962221 111233333321
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++||++|+| +++|++-|.+
T Consensus 342 ---------------------------~~V~pvsA~~~eg---l~~ll~~lr~ 364 (366)
T KOG1489|consen 342 ---------------------------PHVVPVSAKSGEG---LEELLNGLRE 364 (366)
T ss_pred ---------------------------CcEEEeeeccccc---hHHHHHHHhh
Confidence 3689999999999 9999988765
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=138.48 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=77.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcc------------ccc-----ccccceeeEE--EEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKY------------FES-----CTSLKENVGN--FTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~------------~~~-----~~t~~~~~~~--~~~~~~~~~i~D~~G~~~ 67 (211)
+.+++++|+++|+.++|||||+++|++... ... ...+...... +..++..+.++|||||+.
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 367889999999999999999999985210 000 1112222222 333455899999999998
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
|..++ ......+|++++|+|+.+.. ..+..+.+..+.. .++| +++++||+|+.+
T Consensus 88 f~~~~-~~~~~~~d~~llVvd~~~g~--~~~t~~~~~~~~~------~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 88 YVKNM-ITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHH-HHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCEEEEEEEecCCcc
Confidence 87754 44456799999999997632 2334444443322 1277 678999999974
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=129.91 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=83.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--cc---------------ccc--------cccceeeEEEEecCceEEEEECCCch
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK--YF---------------ESC--------TSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~--~~---------------~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
.+|+++|++|+|||||+++|+... .. .++ .++......+.+++..+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999998421 00 011 12223344567778899999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
+|... ...+++.+|++++|+|+++... .....++. .... .++|+++++||+|+..+... ...+.+.+.+
T Consensus 83 df~~~-~~~~l~~aD~~IlVvda~~g~~--~~~~~i~~-~~~~-----~~~P~iivvNK~D~~~a~~~-~~~~~l~~~l 151 (267)
T cd04169 83 DFSED-TYRTLTAVDSAVMVIDAAKGVE--PQTRKLFE-VCRL-----RGIPIITFINKLDREGRDPL-ELLDEIEEEL 151 (267)
T ss_pred HHHHH-HHHHHHHCCEEEEEEECCCCcc--HHHHHHHH-HHHh-----cCCCEEEEEECCccCCCCHH-HHHHHHHHHH
Confidence 98874 5566788999999999987432 22333332 2221 23899999999998766432 2333444433
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.1e-18 Score=134.57 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=107.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccc--cccceeeEEEEecC-ceEEEEECCCc---------hhhhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESC--TSLKENVGNFTYEK-KNIKIVDLPGE---------DRLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~-~~~~i~D~~G~---------~~~~~~~~~~ 75 (211)
..-+.|+++|.+|+|||||+|+|++.... .+. .|..+....+.+.+ ..+.+-||.|. +.|+. ....
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence 45679999999999999999999976542 322 56677777788875 58999999997 34555 2333
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
...+|.++.|+|+++|. ..+..+-...++..-...+ +|+++|.||+|+...... ...+..
T Consensus 269 -~~~aDlllhVVDaSdp~--~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~~~~---~~~~~~------------ 328 (411)
T COG2262 269 -VKEADLLLHVVDASDPE--ILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLEDEEI---LAELER------------ 328 (411)
T ss_pred -hhcCCEEEEEeecCChh--HHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCchhh---hhhhhh------------
Confidence 34599999999999974 4444455566665544444 999999999998755431 111110
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+ ..+.+||++|+| +++|++.|.+
T Consensus 329 --------------------------~~~-~~v~iSA~~~~g---l~~L~~~i~~ 353 (411)
T COG2262 329 --------------------------GSP-NPVFISAKTGEG---LDLLRERIIE 353 (411)
T ss_pred --------------------------cCC-CeEEEEeccCcC---HHHHHHHHHH
Confidence 001 347799999999 9999988765
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-17 Score=128.14 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc--------c-------------cccccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF--------E-------------SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~--------~-------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|++|+|||||+++|+...-. . ...++......+.+++..+++|||||+..+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~- 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVG- 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHH-
Confidence 4899999999999999999742210 0 01233344556677788999999999998877
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
.+..++..+|++++|+|+++... ......+..... .++|.++++||+|+... ......+.+.+.+
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~--~~~~~~~~~~~~------~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~ 144 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVE--VGTEKLWEFADE------AGIPRIIFINKMDRERA-DFDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCccCCC-CHHHHHHHHHHHh
Confidence 46777888999999999987433 223333333221 23899999999999865 3334444555444
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-18 Score=129.92 Aligned_cols=178 Identities=18% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc---cc-cceeeEEEEecCceEEEEECCCchh------------hhhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC---TS-LKENVGNFTYEKKNIKIVDLPGEDR------------LRNKF 72 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t-~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~~~ 72 (211)
.+..+|+++|.||+|||||.|.+.+.+..... .| .....+.++-+...+.++||||.-. +..+.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 34579999999999999999999998864433 23 3344555677777999999999621 11111
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhH-HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHH-HHHHHh
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTL-RDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQK-ELNLVR 149 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~-~~~~~~ 149 (211)
...+.+||+++.++|++++...+ ..+...+... +++|-++|+||+|........ ...+.+.+ ++..
T Consensus 150 -~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y--------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-- 218 (379)
T KOG1423|consen 150 -RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY--------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-- 218 (379)
T ss_pred -HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH--------hcCCceeeccchhcchhhhHHhhhHHhccccccch--
Confidence 22456799999999999643212 1122222222 228999999999987654321 11111110 0000
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCC--cEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYN--QVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+..++... .....-+-...+| --.+|.+||++|+| |++|.+||..
T Consensus 219 -------~kl~v~~~f~~---~p~~~~~~~~~gwshfe~vF~vSaL~G~G---ikdlkqyLms 268 (379)
T KOG1423|consen 219 -------LKLEVQEKFTD---VPSDEKWRTICGWSHFERVFMVSALYGEG---IKDLKQYLMS 268 (379)
T ss_pred -------hhhhHHHHhcc---CCcccccccccCcccceeEEEEecccccC---HHHHHHHHHh
Confidence 00111111000 0000000001112 25689999999999 9999999864
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=128.52 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=90.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchh-----h---hhhhHHHhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDR-----L---RNKFFDQYKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~-----~---~~~~~~~~~~ 78 (211)
.-+.|++.|.||||||||++++++.+. ...|| |.+.+++++..+...++++||||.-+ . ..+-....-.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 457899999999999999999999876 56665 67788999999999999999999721 1 1100111112
Q ss_pred cCCEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 79 SAKGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
-.++|+|++|.+..+. +++.....+..+...- + .|+++|+||+|+......++....
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~--~p~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---K--APIVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---C--CCeEEEEecccccchhHHHHHHHH
Confidence 3689999999987432 3556666666665431 2 799999999999755544444433
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=137.10 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=111.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeEEEEec---CceEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVGNFTYE---KKNIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
.+.+-|.++|+...|||||+..+......... .|....-..+.++ ...+.++|||||+.|.. +...-.+-+|+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~-mRaRGa~vtDI 81 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTA-MRARGASVTDI 81 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHH-HHhcCCccccE
Confidence 35577999999999999999999987764433 2332222334443 35899999999999998 67766677999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
+|+|+|+.|.- ..++.+-+..... .++|++++.||+|+++.. +..+..++.+.
T Consensus 82 aILVVa~dDGv--~pQTiEAI~hak~------a~vP~iVAiNKiDk~~~n-p~~v~~el~~~------------------ 134 (509)
T COG0532 82 AILVVAADDGV--MPQTIEAINHAKA------AGVPIVVAINKIDKPEAN-PDKVKQELQEY------------------ 134 (509)
T ss_pred EEEEEEccCCc--chhHHHHHHHHHH------CCCCEEEEEecccCCCCC-HHHHHHHHHHc------------------
Confidence 99999998843 3555555555432 339999999999998544 33333333211
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.+.-+..++.+.++++||+||+| +++|++.|.
T Consensus 135 ------------gl~~E~~gg~v~~VpvSA~tg~G---i~eLL~~il 166 (509)
T COG0532 135 ------------GLVPEEWGGDVIFVPVSAKTGEG---IDELLELIL 166 (509)
T ss_pred ------------CCCHhhcCCceEEEEeeccCCCC---HHHHHHHHH
Confidence 11112335669999999999999 999998774
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-17 Score=126.17 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--Cccc-------------------ccccccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY--SKYF-------------------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|++|+|||||+++|+. +... ....|+......+.+++..+++|||||+..+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~- 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI- 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH-
Confidence 489999999999999999973 1110 001233334556778888999999999999888
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
.+..+++.+|++++|+|+.+... .+....+..... .++|+++++||+|+.+.. .....+.+.+.+.
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~--~~t~~~~~~~~~------~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~ 145 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVE--PQTETVWRQADR------YNVPRIAFVNKMDRTGAD-FFRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 47778899999999999987432 223333333322 238999999999997543 3334444544443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=135.98 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=77.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC-------ccc-----c-------cccccceeeEEEEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS-------KYF-----E-------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~-------~~~-----~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
..+++++|+++|.+++|||||+++|++. .+. . ...|+......++.++..+.++|||||+.
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4578899999999999999999999862 110 0 00122222222344555899999999998
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE-EEEeCCCccC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL-VCCNKQDQTL 130 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~ 130 (211)
|..++ ...+..+|++++|+|+.+.. ..+..+.+..+.. .++|.+ +++||+|+.+
T Consensus 88 f~~~~-~~~~~~aD~~llVvda~~g~--~~qt~e~l~~~~~------~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 88 YVKNM-ITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHH-HhhhccCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEecCCcc
Confidence 87754 34566799999999998732 2334444443322 227755 5799999974
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-17 Score=134.42 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=78.7
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-----------c--------cccccceeeEEEEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYF-----------E--------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~-----------~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
.+++.++|+++|.+++|||||+++|++..-. . ...|+......++.++..+.++|||||..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 3577899999999999999999999963110 0 00122222223444556899999999998
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLA 131 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 131 (211)
|...+ ...+..+|++++|+|+.... ..+..+.+..+.. .++| +++++||+|+.+.
T Consensus 88 ~~~~~-~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~------~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 88 YVKNM-ITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ------VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHH-HHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEEccCCCCH
Confidence 87754 44566799999999997633 2334444433322 1277 7789999999753
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-17 Score=135.77 Aligned_cols=116 Identities=19% Similarity=0.263 Sum_probs=77.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------c--------------------ccccceeeEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK--YFE--------------S--------------------CTSLKENVGNF 50 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~--------------~--------------------~~t~~~~~~~~ 50 (211)
..+..++|+++|..++|||||+++|+... ... + ..|+......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 35778999999999999999999998432 110 0 01222333345
Q ss_pred EecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 51 TYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+.++..+.++|||||+.|..++.. .+..+|++++|+|+.+... .+..+.+..... ... .|+++++||+|+.+
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~-~l~~aD~allVVDa~~G~~--~qt~~~~~l~~~---lg~--~~iIvvvNKiD~~~ 174 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMAT-GASTCDLAILLIDARKGVL--DQTRRHSFIATL---LGI--KHLVVAVNKMDLVD 174 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHH-HHhhCCEEEEEEECCCCcc--ccchHHHHHHHH---hCC--CceEEEEEeecccc
Confidence 566679999999999998775444 4578999999999976322 222222221111 111 47899999999974
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=135.69 Aligned_cols=112 Identities=19% Similarity=0.262 Sum_probs=74.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------------------c--------ccccceeeEEEEecCc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK--YFE--------------------------S--------CTSLKENVGNFTYEKK 55 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~--~~~--------------------------~--------~~t~~~~~~~~~~~~~ 55 (211)
+||+++|+.++|||||+++|+... ... + ..|+......+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999997321 000 0 0123333444566667
Q ss_pred eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 56 NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
.+.++|||||+.|..++ ...+..+|++++|+|+..... .+..+.+..+.. +.. .++++++||+|+.+.
T Consensus 81 ~~~liDtPGh~~f~~~~-~~~~~~aD~allVVda~~G~~--~qt~~~~~~~~~---~~~--~~iivviNK~D~~~~ 148 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNM-ATGASTADLAVLLVDARKGVL--EQTRRHSYIASL---LGI--RHVVLAVNKMDLVDY 148 (406)
T ss_pred EEEEEeCCCHHHHHHHH-HHHHhhCCEEEEEEECCCCCc--cccHHHHHHHHH---cCC--CcEEEEEEecccccc
Confidence 99999999999997754 445678999999999976432 233333222221 111 468999999999753
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=134.49 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=79.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc------cccc---------c----cccceeeEEEEecCceEEEEECCCchhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK------YFES---------C----TSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~------~~~~---------~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.++.++|+++|..++|||||+++|+... .... . .|+......++.++..+.++|+|||+.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 5678899999999999999999999521 1100 0 1222222334556679999999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
..++ ...+..+|++++|+|+.+.. ..+..+++..+.. .++| +++++||+|+.+
T Consensus 158 ~~~~-~~g~~~aD~ailVVda~~G~--~~qt~e~~~~~~~------~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 VKNM-ITGAAQMDGAILVVSGADGP--MPQTKEHILLAKQ------VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHH-HHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCeEEEEEecccccC
Confidence 8854 44556799999999998743 2445555544432 1277 778999999975
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=132.29 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=76.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc-------c-----cc-------cccccceeeEEEEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK-------Y-----FE-------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~-------~-----~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
..+++++|+++|..++|||||+++|++.. . .. ...|+......+..++..+.+||||||++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 35778999999999999999999997420 0 00 11222222222333445899999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE-EEEeCCCccCC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL-VCCNKQDQTLA 131 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~ 131 (211)
|..++ ......+|++++|+|+.+.. ..+..+.+..+... ++|.+ +++||+|+.+.
T Consensus 88 f~~~~-~~~~~~~D~~ilVvda~~g~--~~qt~e~l~~~~~~------gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 YVKNM-ITGAAQMDGAILVVSATDGP--MPQTREHILLARQV------GVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHH-HHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHHc------CCCEEEEEEEecccCCH
Confidence 88754 33456789999999998732 23334444443321 26655 68999999753
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=132.91 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=79.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC--ccc------------------------cc--------ccccceeeEEEEe
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS--KYF------------------------ES--------CTSLKENVGNFTY 52 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~------------------------~~--------~~t~~~~~~~~~~ 52 (211)
..+++++|+++|+.++|||||+.+|+.. ... .+ ..|+......+++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 3567899999999999999999999751 100 00 0133333344566
Q ss_pred cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hhH---HHHHHHHHHHHcCcCcCCCCCc-EEEEEeCC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KTL---RDVAESLYVILADPQVQSSRVN-ILVCCNKQ 126 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~ 126 (211)
++..++++|||||.+|..+ .......+|++++|+|+.+.. ..+ .++.+.+..+.. .++| +++++||+
T Consensus 83 ~~~~i~lIDtPGh~~f~~~-~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~------~gi~~iiv~vNKm 155 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKN-MITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT------LGVKQMIVCINKM 155 (446)
T ss_pred CCeEEEEEECCChHHHHHH-HHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH------cCCCeEEEEEEcc
Confidence 6779999999999999885 455567799999999997632 001 244444443322 1255 67899999
Q ss_pred CccC
Q psy1914 127 DQTL 130 (211)
Q Consensus 127 Dl~~ 130 (211)
|...
T Consensus 156 D~~~ 159 (446)
T PTZ00141 156 DDKT 159 (446)
T ss_pred cccc
Confidence 9643
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=120.47 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-----------c-----------cccceeeEEEEec---C--ceEEEEECCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFES-----------C-----------TSLKENVGNFTYE---K--KNIKIVDLPGE 65 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~-----------~-----------~t~~~~~~~~~~~---~--~~~~i~D~~G~ 65 (211)
+|+++|+.++|||||+++|+....... + .++......+.+. + ..+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986432211 0 0111112222232 2 37899999999
Q ss_pred hhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 66 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.. ....++..+|++++|+|+++... . ....++..... .++|+++|+||+|+.
T Consensus 82 ~~f~~-~~~~~~~~aD~~llVvD~~~~~~-~-~~~~~~~~~~~------~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMD-EVAAALRLSDGVVLVVDVVEGVT-S-NTERLIRHAIL------EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHH-HHHHHHHhCCEEEEEEECCCCCC-H-HHHHHHHHHHH------cCCCEEEEEECcccC
Confidence 99877 46777888999999999987543 2 22333333321 128999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=134.51 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Ccc---------------cccc--------cccceeeEEEEecCceEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY--SKY---------------FESC--------TSLKENVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~~---------------~~~~--------~t~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.+..+|+++|+.++|||||.++|+. +.. ..++ .++......+.+++..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567999999999999999999973 110 0111 12223344567778899999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
|+..|... ...+++.+|++|+|+|+++... ......+..... .++|+++++||+|+..... .+..+.+.+
T Consensus 88 G~~df~~~-~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~~------~~iPiiv~iNK~D~~~a~~-~~~l~~i~~ 157 (526)
T PRK00741 88 GHEDFSED-TYRTLTAVDSALMVIDAAKGVE--PQTRKLMEVCRL------RDTPIFTFINKLDRDGREP-LELLDEIEE 157 (526)
T ss_pred CchhhHHH-HHHHHHHCCEEEEEEecCCCCC--HHHHHHHHHHHh------cCCCEEEEEECCcccccCH-HHHHHHHHH
Confidence 99999874 5567788999999999987432 233344333221 2399999999999976543 333444544
Q ss_pred HHH
Q psy1914 144 ELN 146 (211)
Q Consensus 144 ~~~ 146 (211)
.+.
T Consensus 158 ~l~ 160 (526)
T PRK00741 158 VLG 160 (526)
T ss_pred HhC
Confidence 443
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=130.68 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=77.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-------------------ccccccceeeEEEEecCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYF-------------------ESCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
..+++++|+++|..++|||||+++|+..... ....|+......++.++..+.++||||+..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3577899999999999999999999862100 000122222222344555899999999998
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE-EEEeCCCccC
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL-VCCNKQDQTL 130 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~ 130 (211)
|..++ ...+..+|++++|+|+.+... .+..+.+..+.. .++|.+ +++||+|+.+
T Consensus 88 f~~~~-~~~~~~aD~~llVVDa~~g~~--~qt~~~~~~~~~------~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 88 YVKNM-ITGAAQMDGAILVVSAADGPM--PQTREHILLARQ------VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHH-HhhhccCCEEEEEEECCCCCc--hHHHHHHHHHHH------cCCCEEEEEEeecCCcc
Confidence 87753 445678999999999976432 333444433322 127876 5899999964
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-16 Score=131.40 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=78.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc--cc------------------------ccc--------cccceeeEEEEe
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK--YF------------------------ESC--------TSLKENVGNFTY 52 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~------------------------~~~--------~t~~~~~~~~~~ 52 (211)
..+++++|+++|+.++|||||+.+|+... .. .+. .|+......++.
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 35778999999999999999999987411 00 000 123333334555
Q ss_pred cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hhH---HHHHHHHHHHHcCcCcCCCCC-cEEEEEeCC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KTL---RDVAESLYVILADPQVQSSRV-NILVCCNKQ 126 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~ 126 (211)
++..++++|+|||++|..+ ....+..+|++|+|+|+.+.. ..+ .++.+.+..... .++ ++++++||+
T Consensus 83 ~~~~i~liDtPGh~df~~~-~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~------~gi~~iIV~vNKm 155 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKN-MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT------LGVKQMICCCNKM 155 (447)
T ss_pred CCEEEEEEECCCHHHHHHH-HHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH------cCCCcEEEEEEcc
Confidence 6669999999999999985 566678899999999998621 001 244444443321 125 578899999
Q ss_pred Ccc
Q psy1914 127 DQT 129 (211)
Q Consensus 127 Dl~ 129 (211)
|+.
T Consensus 156 D~~ 158 (447)
T PLN00043 156 DAT 158 (447)
T ss_pred cCC
Confidence 986
|
|
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=106.54 Aligned_cols=124 Identities=18% Similarity=0.268 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc---ccccce-eeEEEEecCc---eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES---CTSLKE-NVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~---~~t~~~-~~~~~~~~~~---~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
.+..||+++|..++|||+++.++..+.-... .||+.- ....++-+.. .+.++||.|......++..+|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 4568999999999999999999987664322 256543 3344554443 89999999987775558888999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS 135 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 135 (211)
++++|++..++++ |+.+...-..+-+.. .+..+|+++++||+|+.+++...
T Consensus 87 afVLVYs~~d~eS-f~rv~llKk~Idk~K--dKKEvpiVVLaN~rdr~~p~~vd 137 (198)
T KOG3883|consen 87 AFVLVYSPMDPES-FQRVELLKKEIDKHK--DKKEVPIVVLANKRDRAEPREVD 137 (198)
T ss_pred eEEEEecCCCHHH-HHHHHHHHHHHhhcc--ccccccEEEEechhhcccchhcC
Confidence 9999999999776 655543333332222 23459999999999998766544
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=138.65 Aligned_cols=116 Identities=18% Similarity=0.268 Sum_probs=77.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcc--cc--------------c--------------------ccccceeeEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKY--FE--------------S--------------------CTSLKENVGNF 50 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~--------------~--------------------~~t~~~~~~~~ 50 (211)
..++.++|+++|++++|||||+++|+...- .. + ..|+......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 356788999999999999999999985321 10 0 01222233445
Q ss_pred EecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 51 TYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+.++..+.++||||++.|... .......+|++++|+|+.+... .+..+.+..+.. ... .|+++++||+|+.+
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~-~~~~~~~aD~~llVvda~~g~~--~~t~e~~~~~~~---~~~--~~iivvvNK~D~~~ 171 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRN-MVTGASTADLAIILVDARKGVL--TQTRRHSFIASL---LGI--RHVVLAVNKMDLVD 171 (632)
T ss_pred ccCCceEEEEECCChHHHHHH-HHHHHHhCCEEEEEEECCCCcc--ccCHHHHHHHHH---hCC--CeEEEEEEeccccc
Confidence 666678999999999988764 3345677999999999976332 222222222211 111 57889999999964
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-16 Score=129.37 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=113.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEE--Ee-cCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNF--TY-EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~--~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+-|-++|....|||||+.+|.+....... -.++..++.| ++ .|+.+++.|||||..|.. |...--+-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a-MRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA-MRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH-HHhccCccccEEE
Confidence 45678999999999999999999876653322 2222333333 22 456999999999999998 7777777799999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+.+.|.- ..++.+-+..... .++|+++.+||+|.+++... .+..+|..
T Consensus 230 LVVAadDGV--mpQT~EaIkhAk~------A~VpiVvAinKiDkp~a~pe-kv~~eL~~--------------------- 279 (683)
T KOG1145|consen 230 LVVAADDGV--MPQTLEAIKHAKS------ANVPIVVAINKIDKPGANPE-KVKRELLS--------------------- 279 (683)
T ss_pred EEEEccCCc--cHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCHH-HHHHHHHH---------------------
Confidence 999997733 4555555555432 34999999999998866543 33333321
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.....++++.++.++++||++|+| ++.|.+.|.
T Consensus 280 ---------~gi~~E~~GGdVQvipiSAl~g~n---l~~L~eail 312 (683)
T KOG1145|consen 280 ---------QGIVVEDLGGDVQVIPISALTGEN---LDLLEEAIL 312 (683)
T ss_pred ---------cCccHHHcCCceeEEEeecccCCC---hHHHHHHHH
Confidence 112234567779999999999999 999887664
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=130.21 Aligned_cols=160 Identities=12% Similarity=0.141 Sum_probs=100.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc---cccc---ccc--ceeeEE-------------EEec-------------
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY---FESC---TSL--KENVGN-------------FTYE------------- 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~~---~t~--~~~~~~-------------~~~~------------- 53 (211)
+..+++|+++|+.+.|||||+.+|++-.. .+.. .|+ ++.... ..+.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 46788999999999999999999996432 1111 121 111000 0000
Q ss_pred -----CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 54 -----KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 -----~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
...+.++|+|||+.|..+++ .....+|++++|+|+.++.. ..+..+.+..... +.- .|+++|+||+|+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~-~g~~~~D~alLVVda~~g~~-~~qT~ehl~i~~~---lgi--~~iIVvlNKiDl 183 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATML-NGAAVMDAALLLIAANESCP-QPQTSEHLAAVEI---MKL--KHIIILQNKIDL 183 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHH-HHHhhCCEEEEEEECCCCcc-chhhHHHHHHHHH---cCC--CcEEEEEecccc
Confidence 12689999999999988544 44567999999999986311 2334444432221 111 468999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 129 TLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
.+.....+..+++.+.+... ....++++++||++|+| +++|++.|
T Consensus 184 v~~~~~~~~~~ei~~~l~~~--------------------------------~~~~~~iipVSA~~G~n---I~~Ll~~L 228 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGT--------------------------------IADNAPIIPISAQLKYN---IDVVLEYI 228 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhh--------------------------------ccCCCeEEEeeCCCCCC---HHHHHHHH
Confidence 75433333333333222110 01227889999999999 99999998
Q ss_pred h
Q psy1914 209 V 209 (211)
Q Consensus 209 ~ 209 (211)
.
T Consensus 229 ~ 229 (460)
T PTZ00327 229 C 229 (460)
T ss_pred H
Confidence 7
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=121.54 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=84.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEEEecCc-eEEEEECCCchhhhhh----hHHHhhhcCCEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNFTYEKK-NIKIVDLPGEDRLRNK----FFDQYKSSAKGI 83 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~----~~~~~~~~~d~i 83 (211)
||+++|+.+|||||+.+.+..+..+... +|+......+.+.+. .+++||+||+..+... -....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999999976554333 667667666765555 9999999999654331 246678999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
|||+|+.+.+ +.+...++...+.......+++.+.++++|+|+.......+..+.+.+++.
T Consensus 81 IyV~D~qs~~--~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~ 141 (232)
T PF04670_consen 81 IYVFDAQSDD--YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIR 141 (232)
T ss_dssp EEEEETT-ST--CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHH
T ss_pred EEEEEccccc--HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHH
Confidence 9999998322 333444444433322222356899999999999876666655555555444
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-16 Score=137.01 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=90.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-------------ccc--------cccccceeeEEEEecCceEEEEECCCchh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK-------------YFE--------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~-------------~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
....+|+++|..++|||||+++|+... ... ..+|+......+.+++..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 345799999999999999999998521 101 11344455566778888999999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
+.. .+..+++.+|++++|+|+++... .+....|..+.. .++|+++|+||+|+.... .....+.+.+.+.
T Consensus 86 f~~-~~~~~l~~aD~~ilVvd~~~~~~--~~~~~~~~~~~~------~~~p~iiviNK~D~~~~~-~~~~~~~i~~~l~ 154 (687)
T PRK13351 86 FTG-EVERSLRVLDGAVVVFDAVTGVQ--PQTETVWRQADR------YGIPRLIFINKMDRVGAD-LFKVLEDIEERFG 154 (687)
T ss_pred HHH-HHHHHHHhCCEEEEEEeCCCCCC--HHHHHHHHHHHh------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHC
Confidence 888 57788899999999999987543 223333433322 238999999999998653 3333444444443
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=127.44 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=76.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC------ccc------c-------cccccceeeEEEEecCceEEEEECCCchhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS------KYF------E-------SCTSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~------~~~------~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.+++++|+++|..++|||||+++|.+. ... . ...|+......++.++..+.++||||++.|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 567899999999999999999999721 100 0 011232223334445568999999999988
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
..++.. ....+|++++|+|+.+.. ..+..+.+..+.. .++| +++++||+|+.+
T Consensus 138 ~~~~~~-g~~~aD~allVVda~~g~--~~qt~e~l~~~~~------~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMIT-GAAQMDGGILVVSAPDGP--MPQTKEHILLARQ------VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHH-HHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEeeccCC
Confidence 775444 345699999999997643 2333333333322 2278 578899999974
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=125.42 Aligned_cols=167 Identities=18% Similarity=0.239 Sum_probs=102.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------------cc------------cccceeeEEEEe
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK--YFE--------------------SC------------TSLKENVGNFTY 52 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~--------------------~~------------~t~~~~~~~~~~ 52 (211)
..+++++++++|+.++|||||+.+|+-.- +.+ .+ .|+......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 35789999999999999999999997411 100 00 122222333444
Q ss_pred cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hh---HHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KT---LRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
+...++++|+|||..|-.++... ...||+.|+|+|+++.+ .. -.+.++...-... +.- ..+++++||+|
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItG-asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t---lGi--~~lIVavNKMD 156 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITG-ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART---LGI--KQLIVAVNKMD 156 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcc-hhhccEEEEEEECCCCccccccccCCchhHHHHHHHh---cCC--ceEEEEEEccc
Confidence 45589999999999998875554 45599999999998752 11 1223332222221 112 45899999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDW 207 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~ 207 (211)
+.+ ..++..+.+.+++..+ .+..... +.+++|++|||.+|+|..+..+..+|
T Consensus 157 ~v~--wde~rf~ei~~~v~~l--~k~~G~~------------------------~~~v~FIPiSg~~G~Nl~~~s~~~pW 208 (428)
T COG5256 157 LVS--WDEERFEEIVSEVSKL--LKMVGYN------------------------PKDVPFIPISGFKGDNLTKKSENMPW 208 (428)
T ss_pred ccc--cCHHHHHHHHHHHHHH--HHHcCCC------------------------ccCCeEEecccccCCcccccCcCCcC
Confidence 986 2232333333333321 1111100 12388999999999995555555555
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=132.93 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=87.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--c-----cc--------------cccccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK--Y-----FE--------------SCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~--~-----~~--------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.+|+++|..|+|||||+++|+... . .. ...|+......+.+++..+++|||||+..+.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 3589999999999999999997311 1 00 0123334455678888899999999999887
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
. .+..+++.+|++++|+|+.+... .+....+..+.. .++|+++++||+|+.... .....+.+...+.
T Consensus 90 ~-~~~~~l~~~D~~ilVvda~~g~~--~~~~~~~~~~~~------~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~ 156 (689)
T TIGR00484 90 V-EVERSLRVLDGAVAVLDAVGGVQ--PQSETVWRQANR------YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLG 156 (689)
T ss_pred H-HHHHHHHHhCEEEEEEeCCCCCC--hhHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 7 47778889999999999987433 223333333221 238999999999998654 3444445554443
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=129.17 Aligned_cols=128 Identities=14% Similarity=0.230 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Cccc---------------ccc--------cccceeeEEEEecCceEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY--SKYF---------------ESC--------TSLKENVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~~~---------------~~~--------~t~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.+..+|+++|++++|||||+++|+. +... .++ .++......+.+++..+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863 1110 000 11222334467777899999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
|+..|... ...++..+|++|+|+|+++... .+...++. .+.. .++|+++++||+|+... ...++.+.++.
T Consensus 89 G~~df~~~-~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~-~~~~-----~~~PiivviNKiD~~~~-~~~~ll~~i~~ 158 (527)
T TIGR00503 89 GHEDFSED-TYRTLTAVDNCLMVIDAAKGVE--TRTRKLME-VTRL-----RDTPIFTFMNKLDRDIR-DPLELLDEVEN 158 (527)
T ss_pred ChhhHHHH-HHHHHHhCCEEEEEEECCCCCC--HHHHHHHH-HHHh-----cCCCEEEEEECccccCC-CHHHHHHHHHH
Confidence 99988874 4556788999999999987322 22333333 3322 23899999999998754 34445555555
Q ss_pred HHH
Q psy1914 144 ELN 146 (211)
Q Consensus 144 ~~~ 146 (211)
.+.
T Consensus 159 ~l~ 161 (527)
T TIGR00503 159 ELK 161 (527)
T ss_pred HhC
Confidence 544
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=131.01 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=94.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE---EEEecCceEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG---NFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+.+||+++|..|+||||||.++...+++...|..-+.+. .++-+.....++|++....-+. ....-++.++++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~-~l~~EirkA~vi 83 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRL-CLRKEIRKADVI 83 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhH-HHHHHHhhcCEE
Confidence 356789999999999999999999999999877754332221 1222333689999997766555 345567789999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
.++++++++.+ ++.+..+|...++...-...++|+|+|+||+|+......
T Consensus 84 ~lvyavd~~~T-~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 84 CLVYAVDDEST-VDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred EEEEecCChHH-hhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 99999988554 888877777777664434456999999999999866544
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-16 Score=122.21 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCc-eEEEEECCCchh-------hhhhhHHHhhhcCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKK-NIKIVDLPGEDR-------LRNKFFDQYKSSAK 81 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~-~~~i~D~~G~~~-------~~~~~~~~~~~~~d 81 (211)
-|.++|.||+|||||++.++..+. ...|| |..++.+.+...+. .+.+-|.||.-. .-..+.. .+.++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr-HIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR-HIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH-HHHhhh
Confidence 468999999999999999998775 56674 66678888876444 799999999732 1111233 345699
Q ss_pred EEEEEEeCCCc-----hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHHHHHHHhhhcccc
Q psy1914 82 GIVYVLDSSTV-----QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 82 ~ii~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
++++|+|++.. ...+..+..++... ...+.. +|.++|+||+|+....+ .+...+.+.+..
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~--K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~---------- 305 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAE--KPRIVVLNKIDLPLDEEELEELKKALAEAL---------- 305 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhcc--CceEEEEeccCCCcCHHHHHHHHHHHHHhc----------
Confidence 99999999852 22344444444333 123444 89999999999764433 222222222111
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+...+. +||.|++| +++|.+.+.+
T Consensus 306 --------------------------~~~~~~~-ISa~t~~g---~~~L~~~~~~ 330 (369)
T COG0536 306 --------------------------GWEVFYL-ISALTREG---LDELLRALAE 330 (369)
T ss_pred --------------------------CCCccee-eehhcccC---HHHHHHHHHH
Confidence 1222223 99999999 9999877654
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=104.77 Aligned_cols=103 Identities=28% Similarity=0.392 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc--cccc--cccceeeEEEEecCceEEEEECCCchh---------hhhhhHHHhhhc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY--FESC--TSLKENVGNFTYEKKNIKIVDLPGEDR---------LRNKFFDQYKSS 79 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~--~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~ 79 (211)
||+++|.+|+|||||+|+|++.+. .... .|.......+.+++..+.++||||... ....+... +..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQ-ISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH-HCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHH-HHH
Confidence 699999999999999999998543 2222 344444566778888999999999732 11113333 377
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
+|++++|+|++++. .+....+.+.++ .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~---~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPI---TEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHS---HHHHHHHHHHHH------TTSEEEEEEES
T ss_pred CCEEEEEEECCCCC---CHHHHHHHHHHh------cCCCEEEEEcC
Confidence 99999999987732 222222222222 22899999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=113.32 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccce-----eeEEEEec-CceEEEEECCCchhhhh---hhH-HHhhhc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKE-----NVGNFTYE-KKNIKIVDLPGEDRLRN---KFF-DQYKSS 79 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~-----~~~~~~~~-~~~~~i~D~~G~~~~~~---~~~-~~~~~~ 79 (211)
++||+++|.+|+|||||+|+|++..... ..++++. ....+... ...+.+|||||...... .+. ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999855432 1122221 11112111 23789999999853221 011 112456
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+|.++++.|. . +.+....+...+... +.|+++|+||+|+..
T Consensus 81 ~d~~l~v~~~-~----~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~ 121 (197)
T cd04104 81 YDFFIIISST-R----FSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDL 121 (197)
T ss_pred cCEEEEEeCC-C----CCHHHHHHHHHHHHh-----CCCEEEEEecccchh
Confidence 8988887543 2 233333333343321 279999999999953
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=120.59 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=52.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEe---------------------cC---ceEEEEECCCc-
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTY---------------------EK---KNIKIVDLPGE- 65 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~---------------------~~---~~~~i~D~~G~- 65 (211)
|+++|.+|||||||+|+|++... ...+| |..++.+...+ ++ ..+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998764 23332 33444443322 22 27999999998
Q ss_pred ---hhhhhhhHHH---hhhcCCEEEEEEeCC
Q psy1914 66 ---DRLRNKFFDQ---YKSSAKGIVYVLDSS 90 (211)
Q Consensus 66 ---~~~~~~~~~~---~~~~~d~ii~v~d~~ 90 (211)
.+... +... .++++|++++|+|++
T Consensus 81 ~ga~~~~g-lg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKG-LGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhh-HHHHHHHHHHHCCEEEEEEeCC
Confidence 33332 2222 478899999999997
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=115.57 Aligned_cols=108 Identities=21% Similarity=0.204 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--cccc-----------------ccccceeeEEEEec----------CceEEEEECC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK--YFES-----------------CTSLKENVGNFTYE----------KKNIKIVDLP 63 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~--~~~~-----------------~~t~~~~~~~~~~~----------~~~~~i~D~~ 63 (211)
+|+++|..++|||||+.+|+... .... ..|+......+.++ +..+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998532 1100 01222122223333 3478999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
|+..|.. ....+++.+|++++|+|+.+... .+....+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~-~~~~~l~~aD~~ilVvD~~~g~~--~~t~~~l~~~~~------~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSS-EVTAALRLCDGALVVVDAVEGVC--VQTETVLRQALK------ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHH-HHHHHHHhcCeeEEEEECCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCcc
Confidence 9999988 46777888999999999987443 334444444432 228999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-15 Score=110.76 Aligned_cols=118 Identities=13% Similarity=0.185 Sum_probs=79.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-----ccccceeeEEEEecCceEEEEECCCchhh-------hhhhH---HHh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-----CTSLKENVGNFTYEKKNIKIVDLPGEDRL-------RNKFF---DQY 76 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~---~~~ 76 (211)
++|+++|.+|||||||+|.+++.+.... ..|.........+++..+.++||||.... ...+. ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998764221 23444555666778889999999997432 11111 112
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.++++++++|+|+.........+.+++........ -.++++|+|++|......
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~----~~~~ivv~T~~d~l~~~~ 133 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKV----LDHTIVLFTRGDDLEGGT 133 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHh----HhcEEEEEECccccCCCc
Confidence 35689999999987643334445555555443211 147899999999876543
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-15 Score=128.77 Aligned_cols=127 Identities=18% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--cc------c-------------ccccccceeeEEEEecCceEEEEECCCchhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS--KY------F-------------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~--~~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
+-.+|+++|..++|||||+++|+.. .. . ....|+......+.+++..++++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 3457999999999999999999742 10 0 1112444445567788889999999999988
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
..+ +...++.+|++++|+|+.+... .+....+..... .++|+++++||+|+.+.. .....+.+.+.+.
T Consensus 87 ~~e-~~~al~~~D~~ilVvDa~~g~~--~qt~~i~~~~~~------~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l~ 154 (691)
T PRK12739 87 TIE-VERSLRVLDGAVAVFDAVSGVE--PQSETVWRQADK------YGVPRIVFVNKMDRIGAD-FFRSVEQIKDRLG 154 (691)
T ss_pred HHH-HHHHHHHhCeEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 874 7777888999999999987432 223333333322 238999999999998643 4444455554443
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=127.58 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=87.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc--Ccc------c-------------ccccccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY--SKY------F-------------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~--~~~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.+|+++|..++|||||+++|+. +.. . ....|+......+.+++..++++||||+..|.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 45899999999999999999973 111 0 00123333445577888899999999999887
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
.+ ....+..+|++++|+|+..... .+....+..+.. .++|+++++||+|+.+.. .....+.+.+.++.
T Consensus 90 ~e-v~~al~~~D~~vlVvda~~g~~--~qt~~~~~~~~~------~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~ 157 (693)
T PRK00007 90 IE-VERSLRVLDGAVAVFDAVGGVE--PQSETVWRQADK------YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGA 157 (693)
T ss_pred HH-HHHHHHHcCEEEEEEECCCCcc--hhhHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCC
Confidence 74 5556778999999999976432 333444444332 238999999999998654 44445555555544
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=122.39 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=107.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cc----------------ccccccceeeEEEEecC---ceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK--YF----------------ESCTSLKENVGNFTYEK---KNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~--~~----------------~~~~t~~~~~~~~~~~~---~~~~i~D~~G~~~~~ 69 (211)
-.++.|+-....|||||..+|+.-. .. +...|+......+.|.+ ..++++|||||-+|.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 3478999999999999999998421 00 01134444555666666 489999999999999
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHh
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 149 (211)
.+ ....+..|+++|+|+|++.... .++..-+...+.. +..+|.|+||+|++.++ .+.+..++.+.+..
T Consensus 140 ~E-VsRslaac~G~lLvVDA~qGvq--AQT~anf~lAfe~------~L~iIpVlNKIDlp~ad-pe~V~~q~~~lF~~-- 207 (650)
T KOG0462|consen 140 GE-VSRSLAACDGALLVVDASQGVQ--AQTVANFYLAFEA------GLAIIPVLNKIDLPSAD-PERVENQLFELFDI-- 207 (650)
T ss_pred ce-ehehhhhcCceEEEEEcCcCch--HHHHHHHHHHHHc------CCeEEEeeeccCCCCCC-HHHHHHHHHHHhcC--
Confidence 86 6667778999999999987543 3343333444332 27899999999998765 44455555543331
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..-+++.+|||+|-| ++++++.|.+
T Consensus 208 ---------------------------------~~~~~i~vSAK~G~~---v~~lL~AII~ 232 (650)
T KOG0462|consen 208 ---------------------------------PPAEVIYVSAKTGLN---VEELLEAIIR 232 (650)
T ss_pred ---------------------------------CccceEEEEeccCcc---HHHHHHHHHh
Confidence 113668899999999 9999988764
|
|
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-16 Score=112.80 Aligned_cols=153 Identities=14% Similarity=0.228 Sum_probs=115.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe---cCc-eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY---EKK-NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~---~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..++++++|..|.|||+++++...+.|..++ +|++.......+ .+. .+.+|||+|++.+.. +...|+-+..+.|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg-lrdgyyI~~qcAi 87 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG-LRDGYYIQGQCAI 87 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecc-cccccEEecceeE
Confidence 4679999999999999999999999998888 677777666433 232 899999999999988 5667777799999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
++||+...-. +..+.+|..++.+.. .++|+++.+||.|............ ..
T Consensus 88 imFdVtsr~t-~~n~~rwhrd~~rv~----~NiPiv~cGNKvDi~~r~~k~k~v~----------~~------------- 139 (216)
T KOG0096|consen 88 IMFDVTSRFT-YKNVPRWHRDLVRVR----ENIPIVLCGNKVDIKARKVKAKPVS----------FH------------- 139 (216)
T ss_pred EEeeeeehhh-hhcchHHHHHHHHHh----cCCCeeeeccceeccccccccccce----------ee-------------
Confidence 9999987544 677778877776532 2399999999999864431110000 00
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+..+++.||++.-+ .+.-+.|+.+
T Consensus 140 ----------------rkknl~y~~iSaksn~N---fekPFl~Lar 166 (216)
T KOG0096|consen 140 ----------------RKKNLQYYEISAKSNYN---FERPFLWLAR 166 (216)
T ss_pred ----------------ecccceeEEeecccccc---cccchHHHhh
Confidence 12347889999999988 8888888754
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=116.87 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=73.2
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---------hhHHHHHHHHHHHHcCcC
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---------KTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+.+++..+.+||++|+...+. .|.+++.+++++|+|+|+++.+ +.+.++...+..++..+.
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~-kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERK-KWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhh-hHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 345555666777777899999999999998 6999999999999999999742 358888999999998877
Q ss_pred cCCCCCcEEEEEeCCCcc
Q psy1914 112 VQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~ 129 (211)
+.+ +|+++++||.|+.
T Consensus 249 ~~~--~piil~~NK~D~~ 264 (342)
T smart00275 249 FAN--TSIILFLNKIDLF 264 (342)
T ss_pred ccC--CcEEEEEecHHhH
Confidence 777 9999999999985
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=116.64 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=73.5
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---------hhHHHHHHHHHHHHcCcC
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---------KTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+.+++..+.+||++|+...+. .|.+++.+++++|+|+|.++.. ..+.++...+..++.++.
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~-kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERK-KWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccch-hHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 455666666777777999999999999999 6999999999999999998742 458889999999998877
Q ss_pred cCCCCCcEEEEEeCCCcc
Q psy1914 112 VQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~ 129 (211)
+.+ +|+++++||.|+.
T Consensus 226 ~~~--~pill~~NK~D~f 241 (317)
T cd00066 226 FAN--TSIILFLNKKDLF 241 (317)
T ss_pred ccC--CCEEEEccChHHH
Confidence 776 9999999999975
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-15 Score=102.22 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=115.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
-.+||.++|++..|||||+-.+.++.+.+.+ .+.|.+.. ++.+.+. .+.+||++|++++.. +.+-...++-+++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n-~lPiac~dsvaIl 97 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN-MLPIACKDSVAIL 97 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc-cCceeecCcEEEE
Confidence 3579999999999999999999998886544 46666544 3555665 789999999999888 6777778899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
++||.+.+.. +..+.+|+.....- .+.-+| ++|++|-|+.-.-.++ .+..+.+.......
T Consensus 98 FmFDLt~r~T-LnSi~~WY~QAr~~---NktAiP-ilvGTKyD~fi~lp~e-~Q~~I~~qar~YAk-------------- 157 (205)
T KOG1673|consen 98 FMFDLTRRST-LNSIKEWYRQARGL---NKTAIP-ILVGTKYDLFIDLPPE-LQETISRQARKYAK-------------- 157 (205)
T ss_pred EEEecCchHH-HHHHHHHHHHHhcc---CCccce-EEeccchHhhhcCCHH-HHHHHHHHHHHHHH--------------
Confidence 9999998665 88889998887653 333366 5679999986544332 22223222221111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
..+.+.+.||+-..-+ +..+++++
T Consensus 158 -----------------~mnAsL~F~Sts~sIN---v~KIFK~v 181 (205)
T KOG1673|consen 158 -----------------VMNASLFFCSTSHSIN---VQKIFKIV 181 (205)
T ss_pred -----------------HhCCcEEEeecccccc---HHHHHHHH
Confidence 1225778899999999 99998875
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=110.94 Aligned_cols=164 Identities=16% Similarity=0.244 Sum_probs=106.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeE-EEEecCceEEEEECCCchh-------hhhhhHHHh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVG-NFTYEKKNIKIVDLPGEDR-------LRNKFFDQY 76 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 76 (211)
...+++++++|.+|+|||||+|+|..+...+.. .++.+... ...+++..+.+||+||..+ ++. ....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~-~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQ-LYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHH-HHHHH
Confidence 457889999999999999999999975543222 22222222 2456667999999999854 555 46667
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC---------CCHHHHHHHHHHHHHH
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA---------KSSSVVKTLLQKELNL 147 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---------~~~~~~~~~l~~~~~~ 147 (211)
++..|.+++++|+.|+. +.--..++.+++... .+.++++++|.+|.... .....+.+.++.+.+.
T Consensus 115 l~~~DLvL~l~~~~dra--L~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 115 LPKLDLVLWLIKADDRA--LGTDEDFLRDVIILG----LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred hhhccEEEEeccCCCcc--ccCCHHHHHHHHHhc----cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 88899999999998854 333344555554321 22789999999998644 1223344444444432
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....-- ..-+++.+|+..+-| ++++...|.+
T Consensus 189 ~~~~~q-----------------------------~V~pV~~~~~r~~wg---l~~l~~ali~ 219 (296)
T COG3596 189 LGRLFQ-----------------------------EVKPVVAVSGRLPWG---LKELVRALIT 219 (296)
T ss_pred HHHHHh-----------------------------hcCCeEEeccccCcc---HHHHHHHHHH
Confidence 211110 013556677788888 9998877654
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=118.55 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=103.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc-------cc----c-------cccccceeeEEEEecC---c--eEEEEECCCchhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK-------YF----E-------SCTSLKENVGNFTYEK---K--NIKIVDLPGEDRL 68 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~-------~~----~-------~~~t~~~~~~~~~~~~---~--~~~i~D~~G~~~~ 68 (211)
.++.|+-+-..|||||..|++... +. . ...|+..+...+.|.. . .++++|||||-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 467888999999999999998522 10 0 1123333334444432 2 8999999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHH
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLV 148 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 148 (211)
..+ ....+..|.+.++|+|++..-. . ++..-.+..+. .+.-++-|+||+||+.+ +++.+..+++..+..
T Consensus 90 sYE-VSRSLAACEGalLvVDAsQGve-A-QTlAN~YlAle------~~LeIiPViNKIDLP~A-dpervk~eIe~~iGi- 158 (603)
T COG0481 90 SYE-VSRSLAACEGALLVVDASQGVE-A-QTLANVYLALE------NNLEIIPVLNKIDLPAA-DPERVKQEIEDIIGI- 158 (603)
T ss_pred EEE-ehhhHhhCCCcEEEEECccchH-H-HHHHHHHHHHH------cCcEEEEeeecccCCCC-CHHHHHHHHHHHhCC-
Confidence 886 5556677999999999987543 2 22222233332 22789999999999855 455566666654441
Q ss_pred hhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 149 RRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+.||||||.| |+++++.|.+
T Consensus 159 ----------------------------------d~~dav~~SAKtG~g---I~~iLe~Iv~ 183 (603)
T COG0481 159 ----------------------------------DASDAVLVSAKTGIG---IEDVLEAIVE 183 (603)
T ss_pred ----------------------------------CcchheeEecccCCC---HHHHHHHHHh
Confidence 012447799999999 9999998864
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-15 Score=119.43 Aligned_cols=122 Identities=18% Similarity=0.130 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--c--ccceeeEEEEecCceEEEEECCCchh--------hhhhhHHHh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--T--SLKENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQY 76 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 76 (211)
+.+++|+++|+||+|||||+|+|.+.+..-.. | |-+.-...++++|.++.+.||+|..+ ..-.....-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 56799999999999999999999998753222 2 22223344789999999999999854 111111223
Q ss_pred hhcCCEEEEEEeC--CCchhhHHHHHHHHHHHHc---CcCcCCCCCcEEEEEeCCCccCC
Q psy1914 77 KSSAKGIVYVLDS--STVQKTLRDVAESLYVILA---DPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 77 ~~~~d~ii~v~d~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
...+|++++|+|+ ++..+.. .+.+.+...-. .......+.|++++.||+|+...
T Consensus 346 ~~~advi~~vvda~~~~t~sd~-~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDL-KIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhhcCEEEEEecccccccccch-HHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 4569999999999 3333212 22222222211 11111123789999999999755
|
|
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.3e-17 Score=115.57 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=117.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc---eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~---~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
++++++|.-++|||++++++....+...+ .|++. ....+.+++. ++.+||..|++++.. +..-|++.+.+..+
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~-mtrVyykea~~~~i 104 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGN-MTRVYYKEAHGAFI 104 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcc-eEEEEecCCcceEE
Confidence 68999999999999999999998888877 45554 3344677776 788999999999998 88889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcC-CCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQ-SSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|||.+.+.. ++.+..|..++-....+. +..+|+++..||||.......+. -.++.+.-+.
T Consensus 105 Vfdvt~s~t-fe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~-~~~~d~f~ke----------------- 165 (229)
T KOG4423|consen 105 VFDVTRSLT-FEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEA-TRQFDNFKKE----------------- 165 (229)
T ss_pred EEEcccccc-ccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhh-HHHHHHHHhc-----------------
Confidence 999998554 888888877775443322 34589999999999864432221 1112211110
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..-...+++|+|...+ ++|..+.+++
T Consensus 166 -----------------ngf~gwtets~Kenkn---i~Ea~r~lVe 191 (229)
T KOG4423|consen 166 -----------------NGFEGWTETSAKENKN---IPEAQRELVE 191 (229)
T ss_pred -----------------cCccceeeeccccccC---hhHHHHHHHH
Confidence 1115668899999988 9988877664
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-14 Score=126.54 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHcCcccccc---cccceeeEEEEec------------------CceEEEEECCCchhhhhhhHHHhhhcC
Q psy1914 22 SGKTLLFARLVYSKYFESC---TSLKENVGNFTYE------------------KKNIKIVDLPGEDRLRNKFFDQYKSSA 80 (211)
Q Consensus 22 ~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~~------------------~~~~~i~D~~G~~~~~~~~~~~~~~~~ 80 (211)
++||||+.++.+-...... .|.......+.++ -..+.+||||||+.|.. +....+..+
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~-lr~~g~~~a 550 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS-LRKRGGSLA 550 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH-HHHhhcccC
Confidence 4599999999976653322 2222222222222 11489999999999987 566667789
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH--------------HHHHHHHHHHHH
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS--------------SVVKTLLQKELN 146 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--------------~~~~~~l~~~~~ 146 (211)
|++++|+|+++... .+..+.+..+. . .++|+++|+||+|+...... ....++++.++.
T Consensus 551 DivlLVVDa~~Gi~--~qT~e~I~~lk-~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~ 622 (1049)
T PRK14845 551 DLAVLVVDINEGFK--PQTIEAINILR-Q-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY 622 (1049)
T ss_pred CEEEEEEECcccCC--HhHHHHHHHHH-H-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999986321 22222222222 1 13899999999999643210 111112221111
Q ss_pred HHhhhcccccccchhhcccccccCCCCCCe-eecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 147 LVRRTKSNQLEDTNDVAANQTFLGNPDKDF-EFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+. ..+...+.. ...+ ..+++...++++++||+||+| |++|.++|..
T Consensus 623 ~v~----~~L~~~G~~----------~e~~~~~~d~~~~v~iVpVSA~tGeG---Id~Ll~~l~~ 670 (1049)
T PRK14845 623 ELI----GKLYELGFD----------ADRFDRVQDFTRTVAIVPVSAKTGEG---IPELLMMVAG 670 (1049)
T ss_pred HHh----hHHHhcCcc----------hhhhhhhhhcCCCceEEEEEcCCCCC---HHHHHHHHHH
Confidence 100 000000000 0000 012345669999999999999 9999998853
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=111.78 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=67.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCceEEEEECCCchhhhh------hhHHHhhhc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRN------KFFDQYKSS 79 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~~~ 79 (211)
....+++++|.|++|||||+++|++.+. ...|+ |..+.-+.++|++..+++.|+||.-.-.. .-.-...++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 3457999999999999999999998765 45554 55566788999999999999998732111 012234678
Q ss_pred CCEEEEEEeCCCchhhHHHHHH
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAE 101 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~ 101 (211)
||.+++|+|+.......+.+.+
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ 162 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIER 162 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHH
Confidence 9999999999864432333333
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=117.50 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=69.8
Q ss_pred eEEEEECCCchhh-----hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 56 NIKIVDLPGEDRL-----RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 56 ~~~i~D~~G~~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+.++||||.... .. .....+..+|+|++|+|+..... .....+.+.++.. +...|+++|+||+|+.+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k-~M~eqL~eADvVLFVVDat~~~s---~~DeeIlk~Lkk~---~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQK-MLNQQLARASAVLAVLDYTQLKS---ISDEEVREAILAV---GQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CEEEEECCCCCCccchHHHH-HHHHHHhhCCEEEEEEeCCCCCC---hhHHHHHHHHHhc---CCCCCEEEEEEcccCCC
Confidence 6788999998542 22 33446788999999999976322 1122333333321 11259999999999864
Q ss_pred CCC--HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 131 AKS--SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 131 ~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
... .+.+...+...+... ......++++||++|.| +++|++.|
T Consensus 304 reeddkE~Lle~V~~~L~q~--------------------------------~i~f~eIfPVSAlkG~n---id~LLdeI 348 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKG--------------------------------CITPQQIFPVSSMWGYL---ANRARHEL 348 (741)
T ss_pred cccchHHHHHHHHHHHHHhc--------------------------------CCCCceEEEEeCCCCCC---HHHHHHHH
Confidence 332 222233222211100 01125789999999999 99999988
Q ss_pred hh
Q psy1914 209 VT 210 (211)
Q Consensus 209 ~~ 210 (211)
..
T Consensus 349 ~~ 350 (741)
T PRK09866 349 AN 350 (741)
T ss_pred Hh
Confidence 64
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-14 Score=122.15 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=82.2
Q ss_pred EcCCCCCHHHHHHHHHcCcc-------------c--------ccccccceeeEEEEecCceEEEEECCCchhhhhhhHHH
Q psy1914 17 SGLSLSGKTLLFARLVYSKY-------------F--------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQ 75 (211)
Q Consensus 17 ~G~~~~GKSsli~~l~~~~~-------------~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 75 (211)
+|+.|+|||||+++|+...- . ....|+......+.+++..+++|||||+..+.. .+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~-~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTG-EVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHH-HHHH
Confidence 59999999999999963210 0 011344455566788888999999999998877 4667
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
++..+|++++|+|+++... ......+..+.. .++|+++|+||+|+.... .....+.+.+.+
T Consensus 80 ~l~~aD~vllvvd~~~~~~--~~~~~~~~~~~~------~~~p~iiv~NK~D~~~~~-~~~~~~~l~~~l 140 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVE--PQTETVWRQAEK------YGVPRIIFVNKMDRAGAD-FFRVLAQLQEKL 140 (668)
T ss_pred HHHHhCeEEEEEeCCCCcC--HHHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHH
Confidence 7888999999999987443 233333333322 238999999999997643 333444454433
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=95.18 Aligned_cols=139 Identities=21% Similarity=0.257 Sum_probs=93.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhh---hHHHhhhcCCEEEEEEe
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK---FFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~~d~ii~v~d 88 (211)
.|++++|..|+|||||.++|.+...... ....+++++.. .+||||..--++. -......++|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------KTQAve~~d~~--~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------KTQAVEFNDKG--DIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc------ccceeeccCcc--ccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 3799999999999999999988654322 22345555431 4899996432221 12334577999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+.++++.|.... .. .. ..|+|-|++|.||..+.+.+.....+.+ .
T Consensus 74 and~~s~f~p~f---~~------~~--~k~vIgvVTK~DLaed~dI~~~~~~L~e-a----------------------- 118 (148)
T COG4917 74 ANDPESRFPPGF---LD------IG--VKKVIGVVTKADLAEDADISLVKRWLRE-A----------------------- 118 (148)
T ss_pred ccCccccCCccc---cc------cc--ccceEEEEecccccchHhHHHHHHHHHH-c-----------------------
Confidence 988776442111 11 11 2679999999999865444433333321 1
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.-.++|.+|+....| +++|+++|..
T Consensus 119 --------------Ga~~IF~~s~~d~~g---v~~l~~~L~~ 143 (148)
T COG4917 119 --------------GAEPIFETSAVDNQG---VEELVDYLAS 143 (148)
T ss_pred --------------CCcceEEEeccCccc---HHHHHHHHHh
Confidence 115789999999999 9999999864
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-14 Score=108.12 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=101.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccc----------------------------------cceeeEEEEe-
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTS----------------------------------LKENVGNFTY- 52 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t----------------------------------~~~~~~~~~~- 52 (211)
.++++-|+++|..||||||+++||...-.....|. .|+|-+-++.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 35577899999999999999999985221111110 1111111110
Q ss_pred ------------------cCceEEEEECCCchhhh------hhhHHHh-hhcCCEEEEEEeCCCchh--hHHHHHHHHHH
Q psy1914 53 ------------------EKKNIKIVDLPGEDRLR------NKFFDQY-KSSAKGIVYVLDSSTVQK--TLRDVAESLYV 105 (211)
Q Consensus 53 ------------------~~~~~~i~D~~G~~~~~------~~~~~~~-~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~ 105 (211)
+...+.++|||||-..- .-+...+ -...-++++++|.....+ .|=.-.-|-..
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 01268899999983210 0011111 123678999999754221 13222333344
Q ss_pred HHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcE
Q psy1914 106 ILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQV 185 (211)
Q Consensus 106 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (211)
++.. .+.|+|+|+||+|+.++.-..+-...++..-..+...+.+-..++-. .=+..++.++++.
T Consensus 176 ilyk-----tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~-----------SmSL~leeFY~~l 239 (366)
T KOG1532|consen 176 ILYK-----TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTR-----------SMSLMLEEFYRSL 239 (366)
T ss_pred HHHh-----ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhh-----------hHHHHHHHHHhhC
Confidence 4432 34999999999999877544433333332222111111111110000 0112355567889
Q ss_pred EEEEEeeecCCCccchHHHHHHHh
Q psy1914 186 SFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 186 ~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
..+.|||.||+| .++++..+.
T Consensus 240 rtv~VSs~tG~G---~ddf~~av~ 260 (366)
T KOG1532|consen 240 RTVGVSSVTGEG---FDDFFTAVD 260 (366)
T ss_pred ceEEEecccCCc---HHHHHHHHH
Confidence 999999999999 999987664
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=112.85 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=54.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cccc--ccceeeEEEEe---------------------cC---ceEEEEECCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF-ESCT--SLKENVGNFTY---------------------EK---KNIKIVDLPG 64 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~--t~~~~~~~~~~---------------------~~---~~~~i~D~~G 64 (211)
++|+++|.+|||||||+|+|++.... ..+| |+.++.+...+ ++ ..+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987653 3443 44455544321 11 2688999999
Q ss_pred ch----hhhhhhHHHh---hhcCCEEEEEEeCC
Q psy1914 65 ED----RLRNKFFDQY---KSSAKGIVYVLDSS 90 (211)
Q Consensus 65 ~~----~~~~~~~~~~---~~~~d~ii~v~d~~ 90 (211)
.. .... +...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~g-lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRG-LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhh-HHHHHHHHHHHCCEEEEEEeCC
Confidence 62 2221 22233 67899999999997
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-14 Score=108.85 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=72.4
Q ss_pred eEEEEECCCchhh---hhhhHHHhh---hc--CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 56 NIKIVDLPGEDRL---RNKFFDQYK---SS--AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 56 ~~~i~D~~G~~~~---~~~~~~~~~---~~--~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
.+.+||+||+... +. .+..+. .. ++++++++|++...........++........ .++|+++|+||+|
T Consensus 98 ~~~~~d~~g~~~~~~~~~-~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~D 173 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRE-SGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKAD 173 (253)
T ss_pred CEEEEeCCcHHHHHhhhH-HHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhHh
Confidence 6899999998653 22 232222 22 89999999997643322222222222111101 2389999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDW 207 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~ 207 (211)
+....+.......+...-.......... ... .......++ ..++.....+++++||++++| ++++++|
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~--~~~-~~~~~~~~~------~i~~~~~~~~vi~iSa~~~~g---l~~L~~~ 241 (253)
T PRK13768 174 LLSEEELERILKWLEDPEYLLEELKLEK--GLQ-GLLSLELLR------ALEETGLPVRVIPVSAKTGEG---FDELYAA 241 (253)
T ss_pred hcCchhHHHHHHHHhCHHHHHHHHhccc--chH-HHHHHHHHH------HHHHHCCCCcEEEEECCCCcC---HHHHHHH
Confidence 9877655444433331000000000000 000 000000000 001112235789999999999 9999999
Q ss_pred Hhh
Q psy1914 208 MVT 210 (211)
Q Consensus 208 i~~ 210 (211)
|.+
T Consensus 242 I~~ 244 (253)
T PRK13768 242 IQE 244 (253)
T ss_pred HHH
Confidence 975
|
|
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=104.80 Aligned_cols=86 Identities=14% Similarity=0.215 Sum_probs=76.5
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---------hhHHHHHHHHHHHHcCcC
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---------KTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+++++..+.++|++||..-+.+ |.+++.+++++|||++.++.+ +.+.++...+..+++++.
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrK-WihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKK-WIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhh-HHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 5777777888999999999999999999994 999999999999999988632 357888999999999999
Q ss_pred cCCCCCcEEEEEeCCCcc
Q psy1914 112 VQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~ 129 (211)
+.+ .++|+++||.||.
T Consensus 260 F~~--tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 260 FAN--TSIILFLNKKDLF 275 (354)
T ss_pred ccc--CcEEEEeecHHHH
Confidence 988 9999999999995
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=108.87 Aligned_cols=129 Identities=17% Similarity=0.240 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc-----------ccccceeeEE--EEecCc--eEEEEECCCchhhhh----
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFES-----------CTSLKENVGN--FTYEKK--NIKIVDLPGEDRLRN---- 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~---- 70 (211)
-.++|+++|.+|+|||||+|+|++..+... .+|+...... +..++. .+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 357999999999999999999998775332 1233333322 344453 799999999532100
Q ss_pred ----------h---hH-------H-Hhhh--cCCEEEEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 71 ----------K---FF-------D-QYKS--SAKGIVYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 71 ----------~---~~-------~-~~~~--~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
+ .. . ..+. .+++++++++.+... +... .+.+..+. . ++|+++|+||+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~--l~~~D~~~lk~l~-~------~v~vi~VinK~ 153 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG--LKPLDIEFMKRLS-K------RVNIIPVIAKA 153 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC--CCHHHHHHHHHHh-c------cCCEEEEEECC
Confidence 0 00 0 1111 378888888876411 2222 22223322 1 28999999999
Q ss_pred CccCCCCHHHHHHHHHHHHHH
Q psy1914 127 DQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 127 Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
|+....+.....+.+.+.+..
T Consensus 154 D~l~~~e~~~~k~~i~~~l~~ 174 (276)
T cd01850 154 DTLTPEELKEFKQRIMEDIEE 174 (276)
T ss_pred CcCCHHHHHHHHHHHHHHHHH
Confidence 997654444444445544443
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=113.39 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=106.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchh-----hhh-hhH--HHhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDR-----LRN-KFF--DQYKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~-~~~--~~~~~ 78 (211)
....++++|.+|+|||||+|.++..+. ...| +|.....+++.++-..++++||||.-. ... ++. ...-.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 456899999999999999999988765 4444 455667788888777999999999721 100 000 01111
Q ss_pred cCCEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 79 SAKGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
-..+|+|+.|.|.-+. +..+....+..+ .+.+.+ .|+|+|+||+|+....+..+..+.+.+.+..
T Consensus 247 LraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaN--K~~IlvlNK~D~m~~edL~~~~~~ll~~~~~---------- 312 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFAN--KVTILVLNKIDAMRPEDLDQKNQELLQTIID---------- 312 (620)
T ss_pred hhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcC--CceEEEeecccccCccccCHHHHHHHHHHHh----------
Confidence 1367899999987332 345555555555 234555 8999999999999887776666555444431
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
..++.++++|..+.+| +..+.
T Consensus 313 ------------------------~~~v~v~~tS~~~eeg---Vm~Vr 333 (620)
T KOG1490|consen 313 ------------------------DGNVKVVQTSCVQEEG---VMDVR 333 (620)
T ss_pred ------------------------ccCceEEEecccchhc---eeeHH
Confidence 2347889999999999 66544
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=115.22 Aligned_cols=177 Identities=18% Similarity=0.249 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceeeEE--E------------------EecCceEEEEECCCchhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENVGN--F------------------TYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~--~------------------~~~~~~~~i~D~~G~~~~ 68 (211)
+.+-|+|+|...+|||-|+..+.+..... ..-+++..++. + +++--.+-++|||||++|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45679999999999999999998744321 11111111111 1 111126889999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC------CH--------
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK------SS-------- 134 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~~-------- 134 (211)
.. +.......||.+|+|+|+...-. .++.+.+..+.. ++.|+|+++||+|..-.- ..
T Consensus 554 tn-lRsrgsslC~~aIlvvdImhGle--pqtiESi~lLR~------rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 554 TN-LRSRGSSLCDLAILVVDIMHGLE--PQTIESINLLRM------RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hh-hhhccccccceEEEEeehhccCC--cchhHHHHHHHh------cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 98 67777778999999999986321 233333333321 349999999999985221 11
Q ss_pred HHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 135 SVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
..+...+..+++.+-... +-+++|.. | .+.-.+++.-+.++++||.+|+| |..|+-||.++
T Consensus 625 k~v~~EF~~R~~~ii~ef--aEQgLN~~------L-----yykNk~~~~~vsiVPTSA~sGeG---ipdLl~llv~l 685 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEF--AEQGLNAE------L-----YYKNKEMGETVSIVPTSAISGEG---IPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHH--HHcccchh------h-----eeecccccceEEeeecccccCCC---cHHHHHHHHHH
Confidence 112222222332211100 11111100 0 02223556779999999999999 99999998763
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=103.95 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred eEEEEECCCchhhhhhhHHHhh--------hcCCEEEEEEeCCCchh---hHHHHHHHHHHHHcCcCcCCCCCcEEEEEe
Q psy1914 56 NIKIVDLPGEDRLRNKFFDQYK--------SSAKGIVYVLDSSTVQK---TLRDVAESLYVILADPQVQSSRVNILVCCN 124 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 124 (211)
.+.++|||||.++.. .+.... ...-++++++|+....+ .+......+...++ .+.|.+.|+|
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~------~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR------LELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH------HTSEEEEEE-
T ss_pred cEEEEeCCCCEEEEE-echhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh------CCCCEEEeee
Confidence 789999999976543 233322 34568899999875332 22222222222221 2399999999
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHH
Q psy1914 125 KQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQL 204 (211)
Q Consensus 125 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l 204 (211)
|+|+.+.. .....+.+.. ........... ......+.... +++.+....++.+|+++++| +++|
T Consensus 165 K~Dl~~~~-~~~~l~~~~d-~~~l~~~~~~~--~~~l~~~i~~~---------l~~~~~~~~f~pls~~~~~~---~~~L 228 (238)
T PF03029_consen 165 KIDLLSKY-LEFILEWFED-PDSLEDLLESD--YKKLNEEIAEL---------LDDFGLVIRFIPLSSKDGEG---MEEL 228 (238)
T ss_dssp -GGGS-HH-HHHHHHHHHS-HHHHHHHHHT---HHHHHHHHHHH---------CCCCSSS---EE-BTTTTTT---HHHH
T ss_pred ccCcccch-hHHHHHHhcC-hHHHHHHHHHH--HHHHHHHHHHH---------HhhcCCCceEEEEECCChHH---HHHH
Confidence 99998744 2222222211 00000000000 00000000111 11122334889999999999 9999
Q ss_pred HHHHhh
Q psy1914 205 QDWMVT 210 (211)
Q Consensus 205 ~~~i~~ 210 (211)
+..|.+
T Consensus 229 ~~~id~ 234 (238)
T PF03029_consen 229 LAAIDK 234 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-12 Score=100.19 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=73.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCceEEEEECCCchhhhh---h---hHHHhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN---K---FFDQYK 77 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~---~---~~~~~~ 77 (211)
....++|+++|.+|+||||++|+|++.... ....+.+ ........++..+.+|||||...... + ....++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 456789999999999999999999987642 2222222 22233456777999999999854311 1 111111
Q ss_pred --hcCCEEEEEEeC--CCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 78 --SSAKGIVYVLDS--STVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 78 --~~~d~ii~v~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
...|++++|... ......-..+.+.+....... + -.+.++|+|++|....
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~-i---w~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD-I---WRKSLVVLTHAQFSPP 168 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh-h---hccEEEEEECCccCCC
Confidence 258999999543 322221233444444444321 1 1468999999997643
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-13 Score=108.18 Aligned_cols=121 Identities=22% Similarity=0.294 Sum_probs=91.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--ccccc-----------------cccceeeEEEEecCceEEEEECCCchhhhhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK--YFESC-----------------TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKF 72 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~--~~~~~-----------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 72 (211)
.+|+|+-....|||||+..|+... |.... .|+-.....+.|++..++++|||||..|--+
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE- 84 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE- 84 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch-
Confidence 479999999999999999998633 21111 2333344457889999999999999999885
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHH
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLL 141 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l 141 (211)
.+..+.-.|++++++|+.+.. +.+++-.+.+.+... .+.|+|+||+|.+.++....+.+-+
T Consensus 85 VERvl~MVDgvlLlVDA~EGp--MPQTrFVlkKAl~~g------L~PIVVvNKiDrp~Arp~~Vvd~vf 145 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP--MPQTRFVLKKALALG------LKPIVVINKIDRPDARPDEVVDEVF 145 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC--CCchhhhHHHHHHcC------CCcEEEEeCCCCCCCCHHHHHHHHH
Confidence 777788899999999998733 566776777777532 6778899999999888765444433
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-12 Score=97.56 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.+...|+++|++|+|||||++.+.+..-.... ...+. +.....++..+.++||||.. .. +. .....+|++++++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l-~~ak~aDvVllvi 111 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MI-DIAKVADLVLLLI 111 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HH-HHHHhcCEEEEEE
Confidence 45678999999999999999999864221111 11111 11233355689999999964 22 23 3356799999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE-EEEEeCCCccCC
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNI-LVCCNKQDQTLA 131 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~ 131 (211)
|++.... .... .+...+.. .+.|. ++|+||+|+.+.
T Consensus 112 Da~~~~~--~~~~-~i~~~l~~-----~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 112 DASFGFE--METF-EFLNILQV-----HGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred ecCcCCC--HHHH-HHHHHHHH-----cCCCeEEEEEeccccCCc
Confidence 9976332 1122 22333321 12674 459999999743
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=100.41 Aligned_cols=122 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc--c--cccceeeEEEEecCceEEEEECCCchhhh------hhh---HH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES--C--TSLKENVGNFTYEKKNIKIVDLPGEDRLR------NKF---FD 74 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~---~~ 74 (211)
....++|+++|.+|||||||+|+|.+...... . .|........+.++..+.+|||||..... ... ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 45678999999999999999999998764322 2 23333333456677799999999985431 101 11
Q ss_pred Hhhh--cCCEEEEEEeCCCc--hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 75 QYKS--SAKGIVYVLDSSTV--QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 75 ~~~~--~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.++. ..+++++|...+.. ...-..+.+.+....... + -.++++|.||+|......
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~-i---~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS-I---WRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh-h---HhCEEEEEeCCccCCCCC
Confidence 2332 47888888655431 111123444444443321 1 146999999999975543
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-12 Score=104.03 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=61.4
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCc-----------------eEEEEECCC
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKK-----------------NIKIVDLPG 64 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~-----------------~~~i~D~~G 64 (211)
.+++...++|+++|.||||||||+|+|++... ...+| |+.++.+.+.+.+. .+.++||||
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 34557789999999999999999999987654 33444 45667777766532 489999999
Q ss_pred chh-------hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 65 EDR-------LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 65 ~~~-------~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
... ...+++ ..++.+|++++|+|+.
T Consensus 95 Lv~ga~~g~gLg~~fL-~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFL-SHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHH-HHHHHCCEEEEEEeCC
Confidence 632 222222 2456799999999984
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=97.25 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=77.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-----cccceeeEEEEecCceEEEEECCCchh-------hhhhh---HHHh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-----TSLKENVGNFTYEKKNIKIVDLPGEDR-------LRNKF---FDQY 76 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~---~~~~ 76 (211)
++|+++|.+||||||++|.+++....... .|.........+++..+.++||||... ...++ ....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 48999999999999999999987753322 344555566688889999999999621 11111 1223
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
.++.+++++|+........-....+++..+.....+ ..++||+|..|-......
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~----k~~ivvfT~~d~~~~~~~ 134 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW----KHTIVVFTHADELEDDSL 134 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG----GGEEEEEEEGGGGTTTTH
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH----hHhhHHhhhccccccccH
Confidence 457899999999875444345566667776654332 358899999988766653
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=102.89 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=80.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-------------cc-----------------------cccccceeeEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY-------------FE-----------------------SCTSLKENVGNFT 51 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~-------------~~-----------------------~~~t~~~~~~~~~ 51 (211)
.+..+|++.+|...-||||||.||+.... +. ...|+...+..|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 35668999999999999999999986431 00 0013333334444
Q ss_pred ecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHH--HHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 52 YEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAES--LYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
-+..+|.+.|||||++|.++|... -.-||..|+++|+.. ..++++++. +..++. - ..+++..||+||.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTG-ASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG-----I--rhvvvAVNKmDLv 152 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATG-ASTADLAILLVDARK--GVLEQTRRHSFIASLLG-----I--RHVVVAVNKMDLV 152 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcc-cccccEEEEEEecch--hhHHHhHHHHHHHHHhC-----C--cEEEEEEeeeccc
Confidence 455699999999999999875443 445999999999954 334555543 233332 1 5689999999998
Q ss_pred CCCC
Q psy1914 130 LAKS 133 (211)
Q Consensus 130 ~~~~ 133 (211)
+-.+
T Consensus 153 dy~e 156 (431)
T COG2895 153 DYSE 156 (431)
T ss_pred ccCH
Confidence 7653
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=104.53 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=68.0
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
+..+.++||+|...-.. .....+|.++++.+...... ++.... .++. ..-++|+||+|+.....
T Consensus 148 g~d~viieT~Gv~qs~~----~i~~~aD~vlvv~~p~~gd~-iq~~k~---gi~E--------~aDIiVVNKaDl~~~~~ 211 (332)
T PRK09435 148 GYDVILVETVGVGQSET----AVAGMVDFFLLLQLPGAGDE-LQGIKK---GIME--------LADLIVINKADGDNKTA 211 (332)
T ss_pred CCCEEEEECCCCccchh----HHHHhCCEEEEEecCCchHH-HHHHHh---hhhh--------hhheEEeehhcccchhH
Confidence 34889999999874333 13456999999976433222 222221 1221 34489999999986554
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 134 SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.......+...+...... .-.|..+++.+||++|+| +++|+++|.+
T Consensus 212 a~~~~~el~~~L~l~~~~----------------------------~~~w~~pVi~vSA~~g~G---IdeL~~~I~~ 257 (332)
T PRK09435 212 ARRAAAEYRSALRLLRPK----------------------------DPGWQPPVLTCSALEGEG---IDEIWQAIED 257 (332)
T ss_pred HHHHHHHHHHHHhccccc----------------------------ccCCCCCEEEEECCCCCC---HHHHHHHHHH
Confidence 444444444433311000 002335789999999999 9999999875
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=116.18 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC---------------cccc----cccccceeeEE----EEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS---------------KYFE----SCTSLKENVGN----FTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~---------------~~~~----~~~t~~~~~~~----~~~~~~~~~i~D~~G~ 65 (211)
..-.+|+++|+.++|||||+++|+.. ++.. ...|+...... +..++..+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34569999999999999999999742 1111 11233322222 3334558999999999
Q ss_pred hhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 66 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..|.. .....++.+|++++|+|+.+... .+....+..... .++|+++++||+|+...
T Consensus 97 ~~f~~-~~~~al~~aD~~llVvda~~g~~--~~t~~~~~~~~~------~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFGG-DVTRAMRAVDGAIVVVCAVEGVM--PQTETVLRQALK------ENVKPVLFINKVDRLIN 153 (720)
T ss_pred cccHH-HHHHHHHhcCEEEEEEecCCCCC--ccHHHHHHHHHH------cCCCEEEEEEChhcccc
Confidence 99877 36677888999999999976322 222333333322 22788999999999754
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=108.52 Aligned_cols=166 Identities=20% Similarity=0.306 Sum_probs=97.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--c--------------------ccccc------------cccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--K--------------------YFESC------------TSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~--------------------~~~~~------------~t~~~~~~~~~~~ 53 (211)
.+.++.++++|..++|||||+.+++.. . |.-.+ -|.......++-+
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 456789999999999999999998741 1 10000 1111122223333
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc--hhhH---HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV--QKTL---RDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
...++++|.|||..|.+++.... ..+|+.++|+|++-. +..| .++++ ...+++. +.- .-+++++||+|+
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~-sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~--Lgi--~qlivaiNKmD~ 327 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGA-SQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRS--LGI--SQLIVAINKMDL 327 (603)
T ss_pred ceeEEEecCCCccccchhhhccc-cccceEEEEEECCcchhhhccCCCCchHH-HHHHHHH--cCc--ceEEEEeecccc
Confidence 44899999999999988755544 449999999999742 1111 12222 2333322 222 568999999999
Q ss_pred cCCCC--HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccch---HH
Q psy1914 129 TLAKS--SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDV---EQ 203 (211)
Q Consensus 129 ~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i---~~ 203 (211)
.+=.+ -+++...+...+.... .|. ..++.|++||+.+|+|..-+ .+
T Consensus 328 V~Wsq~RF~eIk~~l~~fL~~~~---------------------------gf~--es~v~FIPiSGl~GeNL~k~~~~~~ 378 (603)
T KOG0458|consen 328 VSWSQDRFEEIKNKLSSFLKESC---------------------------GFK--ESSVKFIPISGLSGENLIKIEQENE 378 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHhc---------------------------Ccc--cCCcceEecccccCCcccccccchh
Confidence 74332 1222233332221100 111 22378999999999993332 24
Q ss_pred HHHHH
Q psy1914 204 LQDWM 208 (211)
Q Consensus 204 l~~~i 208 (211)
|.+|-
T Consensus 379 l~~WY 383 (603)
T KOG0458|consen 379 LSQWY 383 (603)
T ss_pred hhhhh
Confidence 56664
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=110.54 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--c---------ccc--------cccceeeEEEEec----------CceEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--F---------ESC--------TSLKENVGNFTYE----------KKNIKI 59 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~---------~~~--------~t~~~~~~~~~~~----------~~~~~i 59 (211)
.+-.+|+++|+.++|||||+++|+...- . .++ .|+......+.+. +..+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3445999999999999999999985221 0 000 1111111223343 347999
Q ss_pred EECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 60 VDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 60 ~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
+||||+..|..+ ....++.+|++|+|+|+.+... .+....|..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~-~~~al~~~D~ailVvda~~g~~--~~t~~~~~~~~~------~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSE-VTAALRVTDGALVVVDCVEGVC--VQTETVLRQALQ------ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHH-HHHHHhcCCeEEEEEECCCCcC--ccHHHHHHHHHH------cCCCEEEEEEChhhh
Confidence 999999999885 5666788999999999987432 334445554443 238999999999997
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=99.49 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc------cccceeeE--------------E------EE-ecC-----ce
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC------TSLKENVG--------------N------FT-YEK-----KN 56 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~------~t~~~~~~--------------~------~~-~~~-----~~ 56 (211)
...++|.++|....|||||..+|.+--..... .|+..-+. . +. .+. ..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 67899999999999999999999863221111 11110000 0 00 000 17
Q ss_pred EEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH
Q psy1914 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV 136 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 136 (211)
+.++|.|||+.....+.... .-.|+.++|++++.++. ..++.+.+..+-- +.- ..+++|-||+||.......+
T Consensus 88 VSfVDaPGHe~LMATMLsGA-AlMDgAlLvIaANEpcP-QPQT~EHl~AleI---igi--k~iiIvQNKIDlV~~E~AlE 160 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGA-ALMDGALLVIAANEPCP-QPQTREHLMALEI---IGI--KNIIIVQNKIDLVSRERALE 160 (415)
T ss_pred EEEeeCCchHHHHHHHhcch-hhhcceEEEEecCCCCC-CCchHHHHHHHhh---hcc--ceEEEEecccceecHHHHHH
Confidence 89999999997666433322 22699999999998654 3455555433211 111 56999999999986654444
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 137 VKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++.+.++. ....+.+++++||..+.| |+.|++.|.+
T Consensus 161 ~y~qIk~FvkG--------------------------------t~Ae~aPIIPiSA~~~~N---IDal~e~i~~ 199 (415)
T COG5257 161 NYEQIKEFVKG--------------------------------TVAENAPIIPISAQHKAN---IDALIEAIEK 199 (415)
T ss_pred HHHHHHHHhcc--------------------------------cccCCCceeeehhhhccC---HHHHHHHHHH
Confidence 33333332220 012237889999999999 9999999875
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=109.46 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--c---------ccc--------cccceeeEEEEec----------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--F---------ESC--------TSLKENVGNFTYE---------------- 53 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~---------~~~--------~t~~~~~~~~~~~---------------- 53 (211)
.+-.+|+++|+.++|||||+.+|+...- . .++ .|+......+.+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 4456899999999999999999985321 0 000 1222122233332
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
+..++++|||||..|..+ ....++.+|++|+|+|+.+... .++...|..+.. .++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e-~~~al~~~D~ailVvda~~Gv~--~~t~~~~~~~~~------~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVC--VQTETVLRQALG------ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHH-HHHHHhhcCEEEEEEECCCCCc--ccHHHHHHHHHH------CCCCEEEEEECCccc
Confidence 347899999999999885 5666788999999999987443 344455555543 238999999999997
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-11 Score=94.21 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=97.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc----ccccc------cccceeeEEEEec---------CceEEEEECCCchhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK----YFESC------TSLKENVGNFTYE---------KKNIKIVDLPGEDRLR 69 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~----~~~~~------~t~~~~~~~~~~~---------~~~~~i~D~~G~~~~~ 69 (211)
..++++.++|...||||+|..+|..-. |.... .|.+.....+... ...+.++|+|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 456899999999999999999998532 21111 1111122222221 1278999999998766
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHH-HHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHH
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAES-LYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLV 148 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 148 (211)
+. .-..-+-.|..++|+|+....+ -+.+.-. +-.++. ...++|+||+|+..........+...+++..
T Consensus 85 Rt-iiggaqiiDlm~lviDv~kG~Q-tQtAEcLiig~~~c--------~klvvvinkid~lpE~qr~ski~k~~kk~~K- 153 (522)
T KOG0461|consen 85 RT-IIGGAQIIDLMILVIDVQKGKQ-TQTAECLIIGELLC--------KKLVVVINKIDVLPENQRASKIEKSAKKVRK- 153 (522)
T ss_pred HH-HHhhhheeeeeeEEEehhcccc-cccchhhhhhhhhc--------cceEEEEeccccccchhhhhHHHHHHHHHHH-
Confidence 53 3333344688999999976432 1111111 122221 4578889999987664443333333333331
Q ss_pred hhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecC----CCccchHHHHHHHhh
Q psy1914 149 RRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDS----ASEYDVEQLQDWMVT 210 (211)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg----~g~~~i~~l~~~i~~ 210 (211)
. ++++ .++.+.+++++||+.| ++ |.||.+.|.+
T Consensus 154 --t----Le~t--------------------~f~g~~PI~~vsa~~G~~~~~~---i~eL~e~l~s 190 (522)
T KOG0461|consen 154 --T----LEST--------------------GFDGNSPIVEVSAADGYFKEEM---IQELKEALES 190 (522)
T ss_pred --H----HHhc--------------------CcCCCCceeEEecCCCccchhH---HHHHHHHHHH
Confidence 1 1111 1245589999999999 88 9999887754
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=100.25 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc------ccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF------ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
-|+..|.-..|||||+..+.+.... ....|+...+..+..++..+.++|.||++++-.++ -......|..++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~m-iag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNL-LAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHH-HhhhcCCceEEEE
Confidence 4788999999999999999975531 22256666666777777799999999999988854 4445668999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+.+.- ..+..+.+. ++.. +.. ...++|+||+|+.+....++..+.+.+.+.
T Consensus 81 V~~deGl--~~qtgEhL~-iLdl--lgi--~~giivltk~D~~d~~r~e~~i~~Il~~l~-------------------- 133 (447)
T COG3276 81 VAADEGL--MAQTGEHLL-ILDL--LGI--KNGIIVLTKADRVDEARIEQKIKQILADLS-------------------- 133 (447)
T ss_pred EeCccCc--chhhHHHHH-HHHh--cCC--CceEEEEeccccccHHHHHHHHHHHHhhcc--------------------
Confidence 9996522 133333322 2221 111 346999999999865533333333322111
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
-.+.+++.+|+++|+| |++|.+.|.++
T Consensus 134 ---------------l~~~~i~~~s~~~g~G---I~~Lk~~l~~L 160 (447)
T COG3276 134 ---------------LANAKIFKTSAKTGRG---IEELKNELIDL 160 (447)
T ss_pred ---------------cccccccccccccCCC---HHHHHHHHHHh
Confidence 0114568899999999 99999988764
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=91.14 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=59.0
Q ss_pred eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE--EEEEeCCCccCCCC
Q psy1914 56 NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI--LVCCNKQDQTLAKS 133 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--iiv~nK~Dl~~~~~ 133 (211)
...++++.|...... ..+ . -++.+|.|+|+.+..... ..... ++.. ++++||+|+.+...
T Consensus 93 D~iiIEt~G~~l~~~-~~~-~--l~~~~i~vvD~~~~~~~~----~~~~~----------qi~~ad~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 93 EMVFIESGGDNLSAT-FSP-E--LADLTIFVIDVAAGDKIP----RKGGP----------GITRSDLLVINKIDLAPMVG 154 (199)
T ss_pred CEEEEECCCCCcccc-cch-h--hhCcEEEEEEcchhhhhh----hhhHh----------HhhhccEEEEEhhhcccccc
Confidence 667888888532222 221 1 257899999997644311 11111 1333 88999999985321
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 134 SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ..+.+.+.+... ....++++|||++|+| ++++++||.+
T Consensus 155 ~--~~~~~~~~~~~~---------------------------------~~~~~i~~~Sa~~g~g---i~el~~~i~~ 193 (199)
T TIGR00101 155 A--DLGVMERDAKKM---------------------------------RGEKPFIFTNLKTKEG---LDTVIDWIEH 193 (199)
T ss_pred c--cHHHHHHHHHHh---------------------------------CCCCCEEEEECCCCCC---HHHHHHHHHh
Confidence 1 111222222211 1226789999999999 9999999975
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-11 Score=95.79 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=114.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc----------c-------cccceeeEEEEec------------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES----------C-------TSLKENVGNFTYE------------------ 53 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~----------~-------~t~~~~~~~~~~~------------------ 53 (211)
+.++.++.+|+.+.|||||+..|..+....- + .|-......+-++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 4578999999999999999999987653210 0 1111111111111
Q ss_pred -----CceEEEEECCCchhhhhhhHHHhh-hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 54 -----KKNIKIVDLPGEDRLRNKFFDQYK-SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 54 -----~~~~~i~D~~G~~~~~~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
++-+.++||.||+.+.+...+..+ +..|-.++++.+.+..+ .-..+.+--.+. ...|++++.||+|
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a------~~lPviVvvTK~D 266 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA------MELPVIVVVTKID 266 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh------hcCCEEEEEEecc
Confidence 236889999999988764344333 56899999999987543 233444433332 2399999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDW 207 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~ 207 (211)
+.+......+.+.+.+.++.....+..... .++........ ..+ ..-++++.+||.||+| ++-|.++
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~-~~d~v~aa~a~-k~~--------~~vvPi~~tSsVTg~G---ldlL~e~ 333 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKD-TDDVVLAAKAM-KAG--------RGVVPIFYTSSVTGEG---LDLLDEF 333 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeec-cchhHHhhhhh-hcC--------CceEEEEEEecccCcc---HHHHHHH
Confidence 988776777777777666654444433221 11111111111 101 1248999999999999 9988887
Q ss_pred Hhh
Q psy1914 208 MVT 210 (211)
Q Consensus 208 i~~ 210 (211)
+..
T Consensus 334 f~~ 336 (527)
T COG5258 334 FLL 336 (527)
T ss_pred HHh
Confidence 754
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=96.72 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=63.0
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
+..+.++||+|..... ......+|.++++.+.... .+...+...+. . +|.++|+||+|+.....
T Consensus 126 g~D~viidT~G~~~~e----~~i~~~aD~i~vv~~~~~~----~el~~~~~~l~------~--~~~ivv~NK~Dl~~~~~ 189 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE----VDIANMADTFVVVTIPGTG----DDLQGIKAGLM------E--IADIYVVNKADGEGATN 189 (300)
T ss_pred CCCEEEEeCCCCchhh----hHHHHhhceEEEEecCCcc----HHHHHHHHHHh------h--hccEEEEEcccccchhH
Confidence 3478999999965322 1235567888887544321 22222222222 2 78899999999985543
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 134 SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.......+...+..+. . ..-.+..+++.+||++|+| ++++++||.+
T Consensus 190 ~~~~~~~~~~~l~~l~--~--------------------------~~~~~~~~v~~iSA~~g~G---i~~L~~~i~~ 235 (300)
T TIGR00750 190 VTIARLMLALALEEIR--R--------------------------REDGWRPPVLTTSAVEGRG---IDELWDAIEE 235 (300)
T ss_pred HHHHHHHHHHHHhhcc--c--------------------------cccCCCCCEEEEEccCCCC---HHHHHHHHHH
Confidence 2222222211111000 0 0001224579999999999 9999999865
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=92.72 Aligned_cols=127 Identities=16% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc----cccccccceeeEEEEecC-ceEEEEECCCchhhhhhhHH----HhhhcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY----FESCTSLKENVGNFTYEK-KNIKIVDLPGEDRLRNKFFD----QYKSSA 80 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~----~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~----~~~~~~ 80 (211)
...||+++|.+||||||+-..+..+.. .....|+.....++.+-| ..+++||.+|++.+-.++.. ..+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 356899999999999998777664332 223356666666676655 48999999999866544333 367889
Q ss_pred CEEEEEEeCCCch--hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 81 KGIVYVLDSSTVQ--KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 81 d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
+++|+|||++..+ ..+.....-+..++++. +...+++..+|.||......+.+-..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S----P~AkiF~l~hKmDLv~~d~r~~if~~ 140 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS----PEAKIFCLLHKMDLVQEDARELIFQR 140 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC----CcceEEEEEeechhcccchHHHHHHH
Confidence 9999999997632 11222222233344332 34678999999999876655444433
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-11 Score=104.58 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--cc---------ccc--------cccceeeEEEEe--c--CceEEEEECCCch
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK--YF---------ESC--------TSLKENVGNFTY--E--KKNIKIVDLPGED 66 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~--~~---------~~~--------~t~~~~~~~~~~--~--~~~~~i~D~~G~~ 66 (211)
+-.+|+++|+.++|||||+.+|+... .. .++ .|+......+.+ + +..++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 34579999999999999999998522 10 000 122222223333 3 3478999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
.|... ....++.+|++++|+|+..... .+....|...... ++|.++++||+|+...
T Consensus 99 df~~~-~~~~l~~~D~avlVvda~~g~~--~~t~~~~~~~~~~------~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 99 DFGGD-VTRAMRAVDGAIVVVDAVEGVM--PQTETVLRQALRE------RVKPVLFINKVDRLIK 154 (731)
T ss_pred ChHHH-HHHHHHhcCEEEEEEECCCCCC--ccHHHHHHHHHHc------CCCeEEEEECchhhcc
Confidence 98874 6667888999999999977432 3344444443321 2678999999998743
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=97.54 Aligned_cols=178 Identities=17% Similarity=0.114 Sum_probs=115.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-------------------cc-----cccceeeEE--EEec-----------
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE-------------------SC-----TSLKENVGN--FTYE----------- 53 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~-------------------~~-----~t~~~~~~~--~~~~----------- 53 (211)
++|++++|...+|||||+.-|..+.... .. .+.|++... +.|.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 5799999999999999999888654211 00 122332111 1221
Q ss_pred -CceEEEEECCCchhhhhhhHHHhhh--cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 54 -KKNIKIVDLPGEDRLRNKFFDQYKS--SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 54 -~~~~~i~D~~G~~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+-++++|++|+.+|.+. .-..+. .++..++|+.+..... ...++.+--+.. .++|++++.+|+|+..
T Consensus 247 SSKlvTfiDLAGh~kY~~T-Ti~gLtgY~Ph~A~LvVsA~~Gi~--~tTrEHLgl~~A------L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKT-TIHGLTGYTPHFACLVVSADRGIT--WTTREHLGLIAA------LNIPFFVLVTKMDLVD 317 (591)
T ss_pred hcceEEEeecccchhhhee-eeeecccCCCceEEEEEEcCCCCc--cccHHHHHHHHH------hCCCeEEEEEeecccc
Confidence 236899999999998763 332221 3688889988865322 223333333332 2399999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 131 AKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
........+++.+.+.+.............++...+. .-.+.++-++++.+|+.+|+| ++.+..+|.
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aa---------q~~~s~nivPif~vSsVsGeg---l~ll~~fLn 384 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAA---------QELCSGNIVPIFAVSSVSGEG---LRLLRTFLN 384 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHH---------HHhccCCceeEEEEeecCccc---hhHHHHHHh
Confidence 8777777888887777766665554433332211100 001235669999999999999 999888775
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=97.87 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=57.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-----cc--cccccceeeEEEEecCc-eEEEEECCCchhhhhhhHHHh---
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY-----FE--SCTSLKENVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQY--- 76 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~-----~~--~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~--- 76 (211)
...+++|+|+|.+|+|||||||+|.+-.- .. ...|+. ....+..... ++.+||+||...... -...|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~-~~~~Y~~p~~pnv~lWDlPG~gt~~f-~~~~Yl~~ 109 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTM-EPTPYPHPKFPNVTLWDLPGIGTPNF-PPEEYLKE 109 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCT-S-EEEE-SS-TTEEEEEE--GGGSS---HHHHHHH
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCC-CCeeCCCCCCCCCeEEeCCCCCCCCC-CHHHHHHH
Confidence 34578999999999999999999975221 11 111221 2222333333 899999999743322 12222
Q ss_pred --hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 77 --KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 77 --~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+..-|.+|++.+. . +.+...++...++. .++|+.+|-||+|.
T Consensus 110 ~~~~~yD~fiii~s~-r----f~~ndv~La~~i~~-----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 VKFYRYDFFIIISSE-R----FTENDVQLAKEIQR-----MGKKFYFVRTKVDS 153 (376)
T ss_dssp TTGGG-SEEEEEESS-S------HHHHHHHHHHHH-----TT-EEEEEE--HHH
T ss_pred ccccccCEEEEEeCC-C----CchhhHHHHHHHHH-----cCCcEEEEEecccc
Confidence 3457888777553 2 34444444444432 33899999999996
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=100.47 Aligned_cols=84 Identities=15% Similarity=0.278 Sum_probs=69.4
Q ss_pred cceeeEEEEe-cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---------hhHHHHHHHHHHHHcCcCc
Q psy1914 43 LKENVGNFTY-EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---------KTLRDVAESLYVILADPQV 112 (211)
Q Consensus 43 ~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~ 112 (211)
+|.....+.+ ++..+.++|++|+...+. -|.+++.++++||||++.++.+ +.+.++...+..++..+.+
T Consensus 223 ~Gi~e~~f~~~~~~~~~~~DvGGqr~eRk-KW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 223 TGITEIDFNFSGSRKFRLIDVGGQRSERK-KWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp SSEEEEEEEE-TTEEEEEEEETSSGGGGG-GGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCeeEEEEEeecccccceecCCCCchhhh-hHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 3444455677 667999999999999888 4999999999999999987532 3588899999999998888
Q ss_pred CCCCCcEEEEEeCCCcc
Q psy1914 113 QSSRVNILVCCNKQDQT 129 (211)
Q Consensus 113 ~~~~~p~iiv~nK~Dl~ 129 (211)
.. .|++|++||.|+.
T Consensus 302 ~~--~~iil~lnK~D~f 316 (389)
T PF00503_consen 302 KN--TPIILFLNKIDLF 316 (389)
T ss_dssp TT--SEEEEEEE-HHHH
T ss_pred cc--CceEEeeecHHHH
Confidence 87 9999999999984
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-11 Score=96.58 Aligned_cols=129 Identities=17% Similarity=0.309 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Cc---------------ccccc--------cccceeeEEEEecCceEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY--SK---------------YFESC--------TSLKENVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~---------------~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.++...+|+-.|.+|||||-.+|+. +. ..+++ .++...+-.++|++..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3456799999999999999999873 11 11222 13333445578889999999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
||++|+....+ .+-.+|..+.|+|+... ++.....+.+.++ +. ++||+-++||.|.. .+++.++.+++++
T Consensus 90 GHeDFSEDTYR-tLtAvDsAvMVIDaAKG---iE~qT~KLfeVcr---lR--~iPI~TFiNKlDR~-~rdP~ELLdEiE~ 159 (528)
T COG4108 90 GHEDFSEDTYR-TLTAVDSAVMVIDAAKG---IEPQTLKLFEVCR---LR--DIPIFTFINKLDRE-GRDPLELLDEIEE 159 (528)
T ss_pred CccccchhHHH-HHHhhheeeEEEecccC---ccHHHHHHHHHHh---hc--CCceEEEeeccccc-cCChHHHHHHHHH
Confidence 99999875333 34559999999999653 2222233344433 23 39999999999987 5556667778887
Q ss_pred HHHH
Q psy1914 144 ELNL 147 (211)
Q Consensus 144 ~~~~ 147 (211)
++..
T Consensus 160 ~L~i 163 (528)
T COG4108 160 ELGI 163 (528)
T ss_pred HhCc
Confidence 7753
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=95.50 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=75.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc---ccccceeeEEEEecCc-eEEEEECCCch---------hhhhhhHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES---CTSLKENVGNFTYEKK-NIKIVDLPGED---------RLRNKFFD 74 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~---~~t~~~~~~~~~~~~~-~~~i~D~~G~~---------~~~~~~~~ 74 (211)
...-.-|+++|.+|+|||||+++|+....... ..|..+..+..++.+. .+-+-||-|.- .|.. ...
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A-TLe 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA-TLE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH-HHH
Confidence 34567899999999999999999995443221 1455555565666555 67788999973 3444 222
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc----EEEEEeCCCccC
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN----ILVCCNKQDQTL 130 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~iiv~nK~Dl~~ 130 (211)
. ...+|.++.|+|++.|.. ++........++.-.... .| ++-|=||+|...
T Consensus 254 e-VaeadlllHvvDiShP~a--e~q~e~Vl~vL~~igv~~--~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 254 E-VAEADLLLHVVDISHPNA--EEQRETVLHVLNQIGVPS--EPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred H-HhhcceEEEEeecCCccH--HHHHHHHHHHHHhcCCCc--HHHHhHHHhhcccccccc
Confidence 2 345999999999999763 445554555554422211 23 344557777653
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=89.81 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=83.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC---c-------cc--c-----cccccceeeEEEEe--cCceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS---K-------YF--E-----SCTSLKENVGNFTY--EKKNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~---~-------~~--~-----~~~t~~~~~~~~~~--~~~~~~i~D~~G~~~ 67 (211)
+.+++++|..+|..+.|||||..+++.- . +. . ....+..+..+++| .+..+..+|+|||.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 5788999999999999999999998741 1 10 0 11233444455444 556999999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCC-cEEEEEeCCCccCCCCH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRV-NILVCCNKQDQTLAKSS 134 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~ 134 (211)
|-+++.....+ .|+.|+|+.+.|.. +.+.++.+.-..+. . + .+++++||+|+.+..+.
T Consensus 88 YvKNMItgAaq-mDgAILVVsA~dGp--mPqTrEHiLlarqv----G--vp~ivvflnK~Dmvdd~el 146 (394)
T COG0050 88 YVKNMITGAAQ-MDGAILVVAATDGP--MPQTREHILLARQV----G--VPYIVVFLNKVDMVDDEEL 146 (394)
T ss_pred HHHHHhhhHHh-cCccEEEEEcCCCC--CCcchhhhhhhhhc----C--CcEEEEEEecccccCcHHH
Confidence 98877665555 89999999998843 45566554443322 1 4 46777899999875543
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-11 Score=93.73 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=68.6
Q ss_pred hhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 66 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
+++.. +.+.++.++|.+++|+|+.++..++..+.+|+..+.. .++|+++|+||+||.+..... ....+.+
T Consensus 24 eR~~~-L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~------~~i~~vIV~NK~DL~~~~~~~---~~~~~~~ 93 (245)
T TIGR00157 24 ERKNE-LTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA------QNIEPIIVLNKIDLLDDEDME---KEQLDIY 93 (245)
T ss_pred cccce-EECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECcccCCCHHHH---HHHHHHH
Confidence 45555 5666889999999999999887568888887765432 238999999999996543221 1111111
Q ss_pred HHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 146 NLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. .....++.+||++|+| +++++++|.+
T Consensus 94 ~-----------------------------------~~g~~v~~~SAktg~g---i~eLf~~l~~ 120 (245)
T TIGR00157 94 R-----------------------------------NIGYQVLMTSSKNQDG---LKELIEALQN 120 (245)
T ss_pred H-----------------------------------HCCCeEEEEecCCchh---HHHHHhhhcC
Confidence 1 0116789999999999 9999998753
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.2e-11 Score=88.99 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-..|+++|+.|+|||||++++...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999853
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=83.89 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=42.5
Q ss_pred eEEEEECCCchhh---hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 56 NIKIVDLPGEDRL---RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 56 ~~~i~D~~G~~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
.+.++||||.... ...++..+++.+|++|+|+++..... ..-...+....... . ..+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~--~~~~~~l~~~~~~~---~--~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT--ESDMEFLKQMLDPD---K--SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG--GHHHHHHHHHHTTT---C--SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc--hHHHHHHHHHhcCC---C--CeEEEEEcCC
Confidence 6899999998432 21367778899999999999987443 22344444444321 1 4489999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-10 Score=99.44 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--cc-----------ccc--------cccceeeEEEEecC-ceEEEEECCCch
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK--YF-----------ESC--------TSLKENVGNFTYEK-KNIKIVDLPGED 66 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~--~~-----------~~~--------~t~~~~~~~~~~~~-~~~~i~D~~G~~ 66 (211)
.+-.+|.++|+.++|||||..+++-.. .. .++ .|+.....++.+++ ..++++|||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 345689999999999999999998421 11 011 23333344567785 899999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
+|..+ ....++-+|+.+.|+|+.+.-. .++...|...... ++|.++++||+|.....-
T Consensus 88 DFt~E-V~rslrvlDgavvVvdaveGV~--~QTEtv~rqa~~~------~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 88 DFTIE-VERSLRVLDGAVVVVDAVEGVE--PQTETVWRQADKY------GVPRILFVNKMDRLGADF 145 (697)
T ss_pred ccHHH-HHHHHHhhcceEEEEECCCCee--ecHHHHHHHHhhc------CCCeEEEEECccccccCh
Confidence 99985 6777888999999999987442 4555666666542 399999999999986653
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.7e-10 Score=89.77 Aligned_cols=117 Identities=12% Similarity=0.096 Sum_probs=73.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcC----ccc-------------ccc-----cccceee---EEEEe--c-C--c
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYS----KYF-------------ESC-----TSLKENV---GNFTY--E-K--K 55 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~----~~~-------------~~~-----~t~~~~~---~~~~~--~-~--~ 55 (211)
.|...++-|+++|+.++|||||+|+|.+. ... +.. .|+.+.. ..+++ . + .
T Consensus 12 ~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~ 91 (492)
T TIGR02836 12 ERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKF 91 (492)
T ss_pred HHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcc
Confidence 35567899999999999999999999976 221 111 3444444 33333 2 2 2
Q ss_pred eEEEEECCCchhh------hhh----------------------hHHHhhh-cCCEEEEEE-eCCC----chhhHHHHHH
Q psy1914 56 NIKIVDLPGEDRL------RNK----------------------FFDQYKS-SAKGIVYVL-DSST----VQKTLRDVAE 101 (211)
Q Consensus 56 ~~~i~D~~G~~~~------~~~----------------------~~~~~~~-~~d~ii~v~-d~~~----~~~~~~~~~~ 101 (211)
++.++||+|...- +.. -+...+. ++++.|+|. |.+- ++. +.++.+
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~-y~~aEe 170 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPRED-YVEAEE 170 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccccccc-chHHHH
Confidence 8999999996210 000 0223344 799999998 8751 122 344444
Q ss_pred HHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 102 SLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 102 ~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
.+...++. .++|+++|+||+|-
T Consensus 171 ~~i~eLk~-----~~kPfiivlN~~dp 192 (492)
T TIGR02836 171 RVIEELKE-----LNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHh-----cCCCEEEEEECcCC
Confidence 44444433 33999999999994
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6e-10 Score=88.05 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-----------cccceeeEEEEe--cCc--eEEEEECCCchh-------h
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-----------TSLKENVGNFTY--EKK--NIKIVDLPGEDR-------L 68 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-----------~t~~~~~~~~~~--~~~--~~~i~D~~G~~~-------~ 68 (211)
+++|+++|.+|+|||||+|.|++....... .+.........+ ++. .++++||||... +
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 579999999999999999999986642221 122222222222 222 899999999521 0
Q ss_pred hh------hhHHHhh-------------hcCCEEEEEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 69 RN------KFFDQYK-------------SSAKGIVYVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 69 ~~------~~~~~~~-------------~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
.. .-...++ .+.++++|+++.+... +.... +.+..+ . ..+++|-|+.|+|.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~--L~~~Di~~mk~L-s------~~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG--LKPLDIEFMKRL-S------KRVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS--S-HHHHHHHHHH-T------TTSEEEEEESTGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc--chHHHHHHHHHh-c------ccccEEeEEecccc
Confidence 00 0011111 2368999999986521 22222 223333 2 12889999999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy1914 129 TLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~ 146 (211)
....+.......+.+.+.
T Consensus 155 lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 155 LTPEELQAFKQRIREDLE 172 (281)
T ss_dssp S-HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 887776666666666554
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=92.32 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc-------------------cccccceeeEEEE-----------------e--
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE-------------------SCTSLKENVGNFT-----------------Y-- 52 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~-------------------~~~t~~~~~~~~~-----------------~-- 52 (211)
++||+++|+..+|||||+.-|..+.... ...+.+-.+-.+. |
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 6799999999999999999888654211 0112221111111 1
Q ss_pred --cC--ceEEEEECCCchhhhhhhHHHhh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 53 --EK--KNIKIVDLPGEDRLRNKFFDQYK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 53 --~~--~~~~i~D~~G~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
.+ +-++++|++||++|... .-.-+ .-.|.-++++-+...- +.-..+.+-..+. ..+|+++|.+|+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKT-TvFGMTGH~PDf~MLMiGaNaGI--iGmTKEHLgLALa------L~VPVfvVVTKI 283 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKT-TVFGMTGHMPDFTMLMIGANAGI--IGMTKEHLGLALA------LHVPVFVVVTKI 283 (641)
T ss_pred eccccceeEEEEeccchhhhhhe-eeeccccCCCCceEEEecccccc--eeccHHhhhhhhh------hcCcEEEEEEee
Confidence 11 26889999999998763 22222 2368888888775422 3334444444332 129999999999
Q ss_pred CccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHH
Q psy1914 127 DQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQD 206 (211)
Q Consensus 127 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~ 206 (211)
|+..+....+..+.+.+.+..........+....++..... ..|. ..+-+++|.+|-.||++ ++.|..
T Consensus 284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A--------~NF~-Ser~CPIFQvSNVtG~N---L~LLkm 351 (641)
T KOG0463|consen 284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAA--------VNFP-SERVCPIFQVSNVTGTN---LPLLKM 351 (641)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEee--------ccCc-cccccceEEeccccCCC---hHHHHH
Confidence 99877766666666665554432333222221111111100 0011 13558999999999999 999888
Q ss_pred HHh
Q psy1914 207 WMV 209 (211)
Q Consensus 207 ~i~ 209 (211)
||.
T Consensus 352 FLN 354 (641)
T KOG0463|consen 352 FLN 354 (641)
T ss_pred HHh
Confidence 875
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=88.93 Aligned_cols=78 Identities=26% Similarity=0.306 Sum_probs=57.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecCc-----------------eEEEEECCCchh----
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEKK-----------------NIKIVDLPGEDR---- 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~-----------------~~~i~D~~G~~~---- 67 (211)
++|+++|.||||||||+|+|++... ...+| |+.++.+.+.+.+. .+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999998774 33443 55677777665542 589999999632
Q ss_pred ---hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 68 ---LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 68 ---~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
...++ -..++.+|++++|+|+.
T Consensus 83 g~glg~~f-L~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQF-LANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHH-HHHHHhCCEEEEEEeCC
Confidence 11112 22356799999999985
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-10 Score=87.03 Aligned_cols=76 Identities=26% Similarity=0.364 Sum_probs=55.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCc-----------------eEEEEECCCchh------
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKK-----------------NIKIVDLPGEDR------ 67 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~-----------------~~~i~D~~G~~~------ 67 (211)
|+++|.+|||||||+|+|++... ...+ .|+.++.+.+.+.+. .+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998775 3334 355677777766553 489999999632
Q ss_pred -hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 68 -LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 68 -~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
....+. ..++.+|++++|+|+.
T Consensus 81 glg~~fL-~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFL-SHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHH-HHHHhCCEEEEEEeCc
Confidence 112122 2356799999999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=87.10 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-----------cccccccc------------------eeeEEEEe-------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-----------FESCTSLK------------------ENVGNFTY------- 52 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-----------~~~~~t~~------------------~~~~~~~~------- 52 (211)
.+-.+|.|.|+||+|||||+++|...-. .++.|.+| ..+..+.-
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 4567999999999999999999974210 11111111 11112211
Q ss_pred -------------cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE
Q psy1914 53 -------------EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119 (211)
Q Consensus 53 -------------~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 119 (211)
-+..+.+++|.|.-+-... ...-+|.+++|+-..-.+. ++....-+.+ ++=
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~----I~~~aD~~v~v~~Pg~GD~-iQ~~KaGimE-----------iaD 170 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD----IADMADTVVLVLVPGLGDE-IQAIKAGIME-----------IAD 170 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH----HHTTSSEEEEEEESSTCCC-CCTB-TTHHH-----------H-S
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH----HHHhcCeEEEEecCCCccH-HHHHhhhhhh-----------hcc
Confidence 1347889999886543321 2355899999986543222 2222222222 344
Q ss_pred EEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCcc
Q psy1914 120 LVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEY 199 (211)
Q Consensus 120 iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~ 199 (211)
++|+||+|+..+.. ....+...+...... .-.|..+++.|||.+|+|
T Consensus 171 i~vVNKaD~~gA~~---~~~~l~~~l~l~~~~----------------------------~~~W~ppV~~tsA~~~~G-- 217 (266)
T PF03308_consen 171 IFVVNKADRPGADR---TVRDLRSMLHLLRER----------------------------EDGWRPPVLKTSALEGEG-- 217 (266)
T ss_dssp EEEEE--SHHHHHH---HHHHHHHHHHHCSTS----------------------------CTSB--EEEEEBTTTTBS--
T ss_pred EEEEeCCChHHHHH---HHHHHHHHHhhcccc----------------------------ccCCCCCEEEEEeCCCCC--
Confidence 88999999653322 222333323210000 114668999999999999
Q ss_pred chHHHHHHHhh
Q psy1914 200 DVEQLQDWMVT 210 (211)
Q Consensus 200 ~i~~l~~~i~~ 210 (211)
+++|++.|.+
T Consensus 218 -i~eL~~~i~~ 227 (266)
T PF03308_consen 218 -IDELWEAIDE 227 (266)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 9999998865
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=5e-10 Score=77.54 Aligned_cols=89 Identities=17% Similarity=0.022 Sum_probs=61.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
+||+++|..|+|||+|+.++....+...+ +|.+ +.. +...+++.++.++.|++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~-~~~~~~~s~~~~~~v~~~ 56 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDV-YDPTSYESFDVVLQCWRV 56 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhh-ccccccCCCCEEEEEEEc
Confidence 48999999999999999999877664332 2222 222 334456778999999999
Q ss_pred CCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 90 STVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+..+ +... |...++.. .+.++|.++++||.|+..
T Consensus 57 ~~~~s-~~~~--~~~~i~~~---~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 57 DDRDS-ADNK--NVPEVLVG---NKSDLPILVGGNRDVLEE 91 (124)
T ss_pred cCHHH-HHHH--hHHHHHhc---CCCCCcEEEEeechhhHh
Confidence 87544 4433 44444332 223489999999999853
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-08 Score=80.07 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc------eEEEEECCCchhhhhhhHHHhhhc----
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK------NIKIVDLPGEDRLRNKFFDQYKSS---- 79 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~------~~~i~D~~G~~~~~~~~~~~~~~~---- 79 (211)
..-.|+++|..++|||||+.+|-+.+-..... +..+..+.+.+. ++.+|=+.|...-.. +....+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~Kkgs--gLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~-LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGS--GLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKG-LLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCC--CcceEEEecccccchhhhhcceEEecCchhhhh-HHhhcccccCcc
Confidence 45689999999999999999998866333333 334444443332 788998888754433 34433332
Q ss_pred CCEEEEEEeCCCchhhHHHHHHH
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAES 102 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~ 102 (211)
-..+|+++|.++|..-++....|
T Consensus 128 etlviltasms~Pw~~lesLqkW 150 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKW 150 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHH
Confidence 24678888998885544444433
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-09 Score=90.71 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---c-ccceeeEEEEecCceEEEEECCCchhh------hhhh---HHHhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---T-SLKENVGNFTYEKKNIKIVDLPGEDRL------RNKF---FDQYK 77 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~-t~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~---~~~~~ 77 (211)
.++|+++|.+|+||||++|.|++....... + |+.........++..+.++||||.... ...+ ...++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 468999999999999999999987632211 2 222222233456779999999998532 1111 11233
Q ss_pred h--cCCEEEEEEeCCCchh--hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 78 S--SAKGIVYVLDSSTVQK--TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 78 ~--~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
. .+|++|+|........ .-..+.+.+..+....-+ ..+|||+|+.|....
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw----k~tIVVFThgD~lpp 251 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW----FNAIVTLTHAASAPP 251 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH----cCEEEEEeCCccCCC
Confidence 3 4799999876543211 112344455555543322 358999999998753
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-09 Score=81.45 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-++++++|+.++||||+++++.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 45689999999999999999999864
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.5e-09 Score=80.09 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-----------ccccccccee------------------eEEE---------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-----------FESCTSLKEN------------------VGNF--------- 50 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-----------~~~~~t~~~~------------------~~~~--------- 50 (211)
.+-..|.|.|.||+|||||+..|...-. .+..|-++.. +..+
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 3456899999999999999999874211 1111111110 0000
Q ss_pred -----------EecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE
Q psy1914 51 -----------TYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119 (211)
Q Consensus 51 -----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 119 (211)
.--+..+.|++|.|--+..... .+-+|.++++.=..-.+. ++....-+.+ +-=
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I----~~~aDt~~~v~~pg~GD~-~Q~iK~GimE-----------iaD 192 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDI----ANMADTFLVVMIPGAGDD-LQGIKAGIME-----------IAD 192 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH----hhhcceEEEEecCCCCcH-HHHHHhhhhh-----------hhh
Confidence 0012378889998875544322 244898888875543232 3333322222 445
Q ss_pred EEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCcc
Q psy1914 120 LVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEY 199 (211)
Q Consensus 120 iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~ 199 (211)
++|+||.|+.++. .....+...+.... ..+..-+|..+++.+||.+|+|
T Consensus 193 i~vINKaD~~~A~---~a~r~l~~al~~~~--------------------------~~~~~~~W~ppv~~t~A~~g~G-- 241 (323)
T COG1703 193 IIVINKADRKGAE---KAARELRSALDLLR--------------------------EVWRENGWRPPVVTTSALEGEG-- 241 (323)
T ss_pred eeeEeccChhhHH---HHHHHHHHHHHhhc--------------------------ccccccCCCCceeEeeeccCCC--
Confidence 8899999954332 22222333232211 0122336888999999999999
Q ss_pred chHHHHHHHhh
Q psy1914 200 DVEQLQDWMVT 210 (211)
Q Consensus 200 ~i~~l~~~i~~ 210 (211)
+++|++-|.+
T Consensus 242 -i~~L~~ai~~ 251 (323)
T COG1703 242 -IDELWDAIED 251 (323)
T ss_pred -HHHHHHHHHH
Confidence 9999998764
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.5e-10 Score=87.79 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+...-|.++|.+|||||||++++++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578899999999999999988763
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-10 Score=81.48 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=81.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccc--------------------cccccceeeE-EEEe---------------
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK---YFE--------------------SCTSLKENVG-NFTY--------------- 52 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~---~~~--------------------~~~t~~~~~~-~~~~--------------- 52 (211)
++|.+.|++|||||+|+.+++..- +.. ..+..+...+ .+..
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 699999999999999999987521 110 0011111111 1100
Q ss_pred -cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHc-CcCcCCCCCcEEEEEeCCCccC
Q psy1914 53 -EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILA-DPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 53 -~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
....+-+++..| ..-.+ ....+. ...-|+|+|+...+... ++ .+.+. ..=++|+||.||.+
T Consensus 94 ~~~~Dll~iEs~G-NL~~~--~sp~L~-d~~~v~VidvteGe~~P----------~K~gP~i~---~aDllVInK~DLa~ 156 (202)
T COG0378 94 FPDLDLLFIESVG-NLVCP--FSPDLG-DHLRVVVIDVTEGEDIP----------RKGGPGIF---KADLLVINKTDLAP 156 (202)
T ss_pred CCcCCEEEEecCc-ceecc--cCcchh-hceEEEEEECCCCCCCc----------ccCCCcee---EeeEEEEehHHhHH
Confidence 112566667777 21111 111111 23778888988755311 01 11111 23478999999987
Q ss_pred CCCH--HHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 131 AKSS--SVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 131 ~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
.... +...+... + +.++.+++.+|++||+| ++++.+||
T Consensus 157 ~v~~dlevm~~da~-~------------------------------------~np~~~ii~~n~ktg~G---~~~~~~~i 196 (202)
T COG0378 157 YVGADLEVMARDAK-E------------------------------------VNPEAPIIFTNLKTGEG---LDEWLRFI 196 (202)
T ss_pred HhCccHHHHHHHHH-H------------------------------------hCCCCCEEEEeCCCCcC---HHHHHHHH
Confidence 6543 32222221 1 23447899999999999 99999998
Q ss_pred hh
Q psy1914 209 VT 210 (211)
Q Consensus 209 ~~ 210 (211)
..
T Consensus 197 ~~ 198 (202)
T COG0378 197 EP 198 (202)
T ss_pred Hh
Confidence 64
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-10 Score=89.27 Aligned_cols=114 Identities=21% Similarity=0.250 Sum_probs=69.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccc--eeeEEEEecCceEEEEECCCc----------hhhhhhhH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLK--ENVGNFTYEKKNIKIVDLPGE----------DRLRNKFF 73 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~--~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~ 73 (211)
..+++++++.|.+|+|||||+|.+.+.+..... +..+ ..+..+.. +..+.++|.||. ..+.. +.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-~~~~~~vDlPG~~~a~y~~~~~~d~~~-~t 210 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-GKSWYEVDLPGYGRAGYGFELPADWDK-FT 210 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-cceEEEEecCCcccccCCccCcchHhH-hH
Confidence 356789999999999999999999987653332 1222 12222333 338999999993 22333 45
Q ss_pred HHhhhc---CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 74 DQYKSS---AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 74 ~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..|+.. --.+.+.+|++.+-. ........++.. .++|+.+|+||||....
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~---~~D~~~i~~~ge-----~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQ---PTDNPEIAWLGE-----NNVPMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCC---CCChHHHHHHhh-----cCCCeEEeeehhhhhhh
Confidence 555433 233455667765322 111122223322 23999999999998643
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-09 Score=84.79 Aligned_cols=120 Identities=22% Similarity=0.225 Sum_probs=87.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC-------c---cc-------ccccccceeeEEEEecC--ceEEEEECCCchh
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS-------K---YF-------ESCTSLKENVGNFTYEK--KNIKIVDLPGEDR 67 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~-------~---~~-------~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~ 67 (211)
+.+++++|.-+|....|||||-.+++.- + +. +....+..+..+++|+- ..+.-.|+|||.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 5678999999999999999999988731 1 11 11134556677776654 3888899999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
|-.++....-+ .|+.|+|+.++|.. +.+.++.+.-..+-.- ..+++.+||.|+.+..+.
T Consensus 130 YIKNMItGaaq-MDGaILVVaatDG~--MPQTrEHlLLArQVGV-----~~ivvfiNKvD~V~d~e~ 188 (449)
T KOG0460|consen 130 YIKNMITGAAQ-MDGAILVVAATDGP--MPQTREHLLLARQVGV-----KHIVVFINKVDLVDDPEM 188 (449)
T ss_pred HHHHhhcCccc-cCceEEEEEcCCCC--CcchHHHHHHHHHcCC-----ceEEEEEecccccCCHHH
Confidence 98876554434 89999999999854 6778877666554321 458888999999866544
|
|
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-10 Score=85.30 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=68.9
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC---------chhhHHHHHHHHHHHHcCcC
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST---------VQKTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~---------~~~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+..++..+.+.|.+|+..-+. -|-+++.+...+++++..+. .++.+++....+..++..++
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserr-KWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERR-KWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 444444444455555788999999999998 49999998888888766542 24557888889999999999
Q ss_pred cCCCCCcEEEEEeCCCccCC
Q psy1914 112 VQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+.. .++|+.+||.|+...
T Consensus 264 F~n--ssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 264 FQN--SSVILFLNKKDLLEE 281 (359)
T ss_pred ccC--CceEEEechhhhhhh
Confidence 888 899999999999754
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-09 Score=79.37 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=59.8
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
++. ++..+++++|++++|+|++++..... ..+.. . . .++|+++|+||+|+............+.+.+.
T Consensus 24 ~~~-~l~~~~~~ad~il~VvD~~~~~~~~~---~~l~~---~--~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~- 91 (190)
T cd01855 24 ILN-LLSSISPKKALVVHVVDIFDFPGSLI---PRLRL---F--G--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA- 91 (190)
T ss_pred HHH-HHHhcccCCcEEEEEEECccCCCccc---hhHHH---h--c--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH-
Confidence 455 67888899999999999987542111 11111 1 1 23899999999999754332221111110000
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.... . .....++.+||++|+| +++|+++|.+
T Consensus 92 ~~~~----------------------------~-~~~~~i~~vSA~~~~g---i~eL~~~l~~ 122 (190)
T cd01855 92 AAGL----------------------------G-LKPKDVILISAKKGWG---VEELINAIKK 122 (190)
T ss_pred Hhhc----------------------------C-CCcccEEEEECCCCCC---HHHHHHHHHH
Confidence 0000 0 0012468899999999 9999999865
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-09 Score=77.21 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=56.4
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhh
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
++.+..+++|++++|+|++++..... ..+...+.. .++|+++|+||+|+.+.. ... .+. .+..
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~---~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~---~~~-~~~-~~~~---- 67 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRS---RKLERYVLE-----LGKKLLIVLNKADLVPKE---VLE-KWK-SIKE---- 67 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCC---HHHHHHHHh-----CCCcEEEEEEhHHhCCHH---HHH-HHH-HHHH----
Confidence 67778888999999999987543111 122222221 238999999999995321 111 111 0100
Q ss_pred cccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 152 KSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++.+||++|+| +++|++.|.+
T Consensus 68 ------------------------------~~~~~~~~iSa~~~~g---i~~L~~~l~~ 93 (156)
T cd01859 68 ------------------------------SEGIPVVYVSAKERLG---TKILRRTIKE 93 (156)
T ss_pred ------------------------------hCCCcEEEEEcccccc---HHHHHHHHHH
Confidence 0014578899999999 9999998864
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.7e-08 Score=81.27 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc------eEEEEECCCchhhhhhhHHHhhhc---
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK------NIKIVDLPGEDRLRNKFFDQYKSS--- 79 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~------~~~i~D~~G~~~~~~~~~~~~~~~--- 79 (211)
..+..|+|+|..++|||||+.+|.+.+- ..++.+..+..+...+. .+.+|-+.|...+.. +....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~-LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSD-LLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHh-HhcccCCcccc
Confidence 3567999999999999999999876432 22455544544433221 789999988665555 44433321
Q ss_pred -CCEEEEEEeCCCchhhHHHH
Q psy1914 80 -AKGIVYVLDSSTVQKTLRDV 99 (211)
Q Consensus 80 -~d~ii~v~d~~~~~~~~~~~ 99 (211)
--.+++|+|.+.|...+++.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL 120 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESL 120 (472)
T ss_pred cceEEEEEecCCChHHHHHHH
Confidence 35688889999886544333
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.5e-09 Score=88.00 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc---------cccccce----e-------eEEEEe---cCc--eEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE---------SCTSLKE----N-------VGNFTY---EKK--NIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~---------~~~t~~~----~-------~~~~~~---~~~--~~~i~D~~ 63 (211)
..-.+|+++|+-++|||+|+..|....-+. .++++.+ + -.++-+ +++ -+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 344689999999999999999998654321 1111111 0 011111 222 78999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
||-.|..+ ....++-+|++++|+|+.+.- .-...+.+...+++. .|+.+|+||+|+.
T Consensus 206 GHVnF~DE-~ta~l~~sDgvVlvvDv~EGV--mlntEr~ikhaiq~~------~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDE-TTASLRLSDGVVLVVDVAEGV--MLNTERIIKHAIQNR------LPIVVVINKVDRL 262 (971)
T ss_pred CcccchHH-HHHHhhhcceEEEEEEcccCc--eeeHHHHHHHHHhcc------CcEEEEEehhHHH
Confidence 99999886 555677799999999997643 345555566665532 8999999999974
|
|
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.9e-09 Score=78.41 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=65.2
Q ss_pred EEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc---------hhhHHHHHHHHHHHHcCcCcCCCCCcE
Q psy1914 49 NFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV---------QKTLRDVAESLYVILADPQVQSSRVNI 119 (211)
Q Consensus 49 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~p~ 119 (211)
.+.++..++.++|.+|+..-+. -|-.++++..++|+|+.+++. ++.+.++...+..+.++.++.. +.+
T Consensus 196 ~FqVdkv~FhMfDVGGQRDeRr-KWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t--isv 272 (379)
T KOG0099|consen 196 KFQVDKVNFHMFDVGGQRDERR-KWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT--ISV 272 (379)
T ss_pred EEeccccceeeeccCCchhhhh-hHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh--hhe
Confidence 3444455899999999999998 499999999999999988742 2457888888888888877776 899
Q ss_pred EEEEeCCCccC
Q psy1914 120 LVCCNKQDQTL 130 (211)
Q Consensus 120 iiv~nK~Dl~~ 130 (211)
|+.+||.|+..
T Consensus 273 IlFLNKqDlla 283 (379)
T KOG0099|consen 273 ILFLNKQDLLA 283 (379)
T ss_pred eEEecHHHHHH
Confidence 99999999963
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-09 Score=75.37 Aligned_cols=55 Identities=25% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceee--EEEEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENV--GNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 65 (211)
.+.+|+++|.+|+|||||+|+|.+.......++.+... ..+.. +..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-CCCEEEEECcCC
Confidence 46789999999999999999999866544333222222 22222 236899999994
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=80.97 Aligned_cols=79 Identities=25% Similarity=0.348 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecC-------------c-----eEEEEECCCch---
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEK-------------K-----NIKIVDLPGED--- 66 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~-------------~-----~~~i~D~~G~~--- 66 (211)
.+++.|+|.||||||||+|+++.... ...|| |+.++.+...+.+ . .+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998774 36665 7778877654321 1 78899999972
Q ss_pred ----hhhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 67 ----RLRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 67 ----~~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
-.-.++.. -++.+|+++.|+|++
T Consensus 82 s~GeGLGNkFL~-~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLD-NIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHH-hhhhcCeEEEEEEec
Confidence 12222332 356799999999987
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=75.27 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
..++++++|.+|+|||||+|+|.+....... |.++.....+.++ ..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcCC
Confidence 3479999999999999999999987653333 3333333334443 37899999994
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=72.13 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
..+++++|.+|+|||||+|++.+....... +..+.....+.+++ .+.+|||||.
T Consensus 83 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 348999999999999999999987764332 22333334455544 6899999996
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=76.10 Aligned_cols=130 Identities=20% Similarity=0.313 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-----------ccccceeeEEEEec--Cc--eEEEEECCCchhh-----
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-----------CTSLKENVGNFTYE--KK--NIKIVDLPGEDRL----- 68 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-----------~~t~~~~~~~~~~~--~~--~~~i~D~~G~~~~----- 68 (211)
.-.+.|+++|++|+||||++|.|++...... .+++........+. +. .++++||||...+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4568999999999999999999998643222 13333344443333 32 8999999997321
Q ss_pred ---------hhhhHHHhh--------------hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy1914 69 ---------RNKFFDQYK--------------SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 69 ---------~~~~~~~~~--------------~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
.. ....|+ .++++++|.+-.+. . .+....-...+-+. ..+.+|-|+.|
T Consensus 101 ~we~I~~yI~~-q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h-~l~~~DIe~Mk~ls------~~vNlIPVI~K 171 (373)
T COG5019 101 CWEPIVDYIDD-QFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-H-GLKPLDIEAMKRLS------KRVNLIPVIAK 171 (373)
T ss_pred cHHHHHHHHHH-HHHHHHHHhhccccccccccCceEEEEEEecCCC-C-CCCHHHHHHHHHHh------cccCeeeeeec
Confidence 11 111121 13688999887654 1 13232222222221 11778889999
Q ss_pred CCccCCCCHHHHHHHHHHHHHH
Q psy1914 126 QDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 126 ~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
+|.....+.....+.+.+.+..
T Consensus 172 aD~lT~~El~~~K~~I~~~i~~ 193 (373)
T COG5019 172 ADTLTDDELAEFKERIREDLEQ 193 (373)
T ss_pred cccCCHHHHHHHHHHHHHHHHH
Confidence 9999887777666666665543
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=73.71 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=52.9
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
+.++|.+++|+|++++.... ...+.+.+... ..++|+++|+||+|+.+.. .....+. .+..
T Consensus 6 l~~aD~il~VvD~~~p~~~~---~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~---~~~~~~~-~~~~--------- 66 (157)
T cd01858 6 IDSSDVVIQVLDARDPMGTR---CKHVEEYLKKE---KPHKHLIFVLNKCDLVPTW---VTARWVK-ILSK--------- 66 (157)
T ss_pred hhhCCEEEEEEECCCCcccc---CHHHHHHHHhc---cCCCCEEEEEEchhcCCHH---HHHHHHH-HHhc---------
Confidence 56799999999998863211 12233333221 1238999999999996432 1111111 1110
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++.+||++|.| +++|.++|.+
T Consensus 67 -------------------------~~~~~~~~iSa~~~~~---~~~L~~~l~~ 92 (157)
T cd01858 67 -------------------------EYPTIAFHASINNPFG---KGSLIQLLRQ 92 (157)
T ss_pred -------------------------CCcEEEEEeecccccc---HHHHHHHHHH
Confidence 0112357799999999 9999998864
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-08 Score=81.99 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=59.6
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
.+..+.++|.+++|+|+.++......+.+++..... .++|+++|+||+||..... .. .+.+.+.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~------~~ip~ILVlNK~DLv~~~~---~~-~~~~~~~------ 146 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES------TGLEIVLCLNKADLVSPTE---QQ-QWQDRLQ------ 146 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEchhcCChHH---HH-HHHHHHH------
Confidence 334567899999999998765334445566554421 2389999999999963321 11 1111121
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.++.+||++|+| +++|+++|..
T Consensus 147 -----------------------------~~g~~v~~iSA~tg~G---I~eL~~~L~~ 172 (352)
T PRK12289 147 -----------------------------QWGYQPLFISVETGIG---LEALLEQLRN 172 (352)
T ss_pred -----------------------------hcCCeEEEEEcCCCCC---HHHHhhhhcc
Confidence 1115678899999999 9999998753
|
|
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-07 Score=70.65 Aligned_cols=129 Identities=15% Similarity=0.186 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEEEecCceEEEEECCCchhhhh-h-hHHHhhhcCCEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNFTYEKKNIKIVDLPGEDRLRN-K-FFDQYKSSAKGIV 84 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~-~~~~~~~~~d~ii 84 (211)
+++|+++|...|||||+-+-...+-.+... .|-.+...++.-.-..+.+||.||+..+-. . =....++++-++|
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 477999999999999998766653322211 111111111111111789999999954311 0 0233578899999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHH
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQ 142 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~ 142 (211)
+|+|+.+ . +.+....+........--++++.+=+.+.|.|-.......+.+..+.
T Consensus 107 fvIDaQd--d-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~ 161 (347)
T KOG3887|consen 107 FVIDAQD--D-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIH 161 (347)
T ss_pred EEEechH--H-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHH
Confidence 9999966 2 33333333333333223345688999999999876554433333333
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-08 Score=78.68 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=56.1
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
..++|.+++|+|+.++........+|+..+.. .++|+++|+||+||.+.. .... .+.+.+.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~------~~ip~iIVlNK~DL~~~~--~~~~-~~~~~~~---------- 138 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA------NGIKPIIVLNKIDLLDDL--EEAR-ELLALYR---------- 138 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEhHHcCCCH--HHHH-HHHHHHH----------
Confidence 47799999999998765433334455444322 238999999999996321 1111 1111111
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
....+++.+||++|+| +++|+++|.
T Consensus 139 -------------------------~~g~~v~~vSA~~g~g---i~~L~~~l~ 163 (298)
T PRK00098 139 -------------------------AIGYDVLELSAKEGEG---LDELKPLLA 163 (298)
T ss_pred -------------------------HCCCeEEEEeCCCCcc---HHHHHhhcc
Confidence 0115778999999999 999998874
|
|
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=78.05 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=62.0
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecC--------------c---eEEEEECCC
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEK--------------K---NIKIVDLPG 64 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~--------------~---~~~i~D~~G 64 (211)
..|...++++.|+|.+|||||||+|.|+.... ...+| |+.++...+.+.+ . .++++|++|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 34556789999999999999999999998765 45554 7777777665432 1 789999998
Q ss_pred chh-------hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 65 EDR-------LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 65 ~~~-------~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
.-. .-..+. ..++.+|+++.|+++.
T Consensus 94 LvkGAs~G~GLGN~FL-s~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFL-SHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcccCcCchHHHH-HhhhhccceeEEEEec
Confidence 632 122122 2357799999999875
|
|
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=71.59 Aligned_cols=87 Identities=28% Similarity=0.333 Sum_probs=62.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchhhhhhh------HHHhhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKF------FDQYKS 78 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~~~ 78 (211)
+....||+++|.|.+|||||+..++.-.. ...+ .|...-.+.+.+++..+++.|+||.-.-..+- .-...+
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 34568999999999999999999986443 2222 45555567789999999999999974322110 111235
Q ss_pred cCCEEEEEEeCCCchh
Q psy1914 79 SAKGIVYVLDSSTVQK 94 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~ 94 (211)
.+|.+++|+|++..+.
T Consensus 139 taDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 139 TADLILMVLDATKSED 154 (364)
T ss_pred cccEEEEEecCCcchh
Confidence 6899999999987543
|
|
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-07 Score=74.83 Aligned_cols=116 Identities=18% Similarity=0.294 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEE-------------------Ee--------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNF-------------------TY-------------- 52 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~-------------------~~-------------- 52 (211)
.++=|+++|.-..||||+++.|+..+++.-. ||+..-+..+ ++
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 3567999999999999999999998875322 4433222111 01
Q ss_pred -----cC---ceEEEEECCCchh-----------hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcC
Q psy1914 53 -----EK---KNIKIVDLPGEDR-----------LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQ 113 (211)
Q Consensus 53 -----~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (211)
.+ ..++++||||.-+ |.. ...-+..++|.||++||+...+- -++..+.+..+..+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~-v~~WFaeR~D~IiLlfD~hKLDI-sdEf~~vi~aLkG~---- 210 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTG-VLEWFAERVDRIILLFDAHKLDI-SDEFKRVIDALKGH---- 210 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHH-HHHHHHHhccEEEEEechhhccc-cHHHHHHHHHhhCC----
Confidence 01 1799999999732 222 23335678999999999976332 23344443443322
Q ss_pred CCCCcEEEEEeCCCccCCCC
Q psy1914 114 SSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 114 ~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.-.+=+|+||+|..+..+
T Consensus 211 --EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 211 --EDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred --cceeEEEeccccccCHHH
Confidence 245778899999875544
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.6e-08 Score=70.34 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=49.3
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHH-HHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLY-VILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
|++++|+|+.++..... .++. ..+.. .++|+++|+||+|+... ......+. .+..
T Consensus 1 Dvvl~VvD~~~p~~~~~---~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~---~~~~~~~~-~~~~------------ 56 (155)
T cd01849 1 DVILEVLDARDPLGTRS---PDIERVLIKE-----KGKKLILVLNKADLVPK---EVLRKWLA-YLRH------------ 56 (155)
T ss_pred CEEEEEEeccCCccccC---HHHHHHHHhc-----CCCCEEEEEechhcCCH---HHHHHHHH-HHHh------------
Confidence 68999999988654221 1222 22221 23899999999999643 11111111 1110
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.....++.+||++|.| +++|.+.|.
T Consensus 57 ----------------------~~~~~ii~vSa~~~~g---i~~L~~~i~ 81 (155)
T cd01849 57 ----------------------SYPTIPFKISATNGQG---IEKKESAFT 81 (155)
T ss_pred ----------------------hCCceEEEEeccCCcC---hhhHHHHHH
Confidence 0014668899999999 999998874
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.2e-08 Score=71.25 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=57.5
Q ss_pred CCCchh-hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 62 LPGEDR-LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
.|||.. ...+ ....+.++|.+++|+|++++...... .+...+ .+ .|+++|+||+|+.+. ......
T Consensus 2 ~~~~~~~~~~~-~~~~i~~aD~il~v~D~~~~~~~~~~---~i~~~~-----~~--k~~ilVlNK~Dl~~~---~~~~~~ 67 (171)
T cd01856 2 FPGHMAKALRQ-IKEKLKLVDLVIEVRDARIPLSSRNP---LLEKIL-----GN--KPRIIVLNKADLADP---KKTKKW 67 (171)
T ss_pred CchHHHHHHHH-HHHHHhhCCEEEEEeeccCccCcCCh---hhHhHh-----cC--CCEEEEEehhhcCCh---HHHHHH
Confidence 466632 2332 34456789999999999875432111 112221 12 789999999999532 111111
Q ss_pred HHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 141 LQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ +.+.. ....++.+||++|+| +++|.+.|.+
T Consensus 68 ~-~~~~~-----------------------------------~~~~vi~iSa~~~~g---i~~L~~~l~~ 98 (171)
T cd01856 68 L-KYFES-----------------------------------KGEKVLFVNAKSGKG---VKKLLKAAKK 98 (171)
T ss_pred H-HHHHh-----------------------------------cCCeEEEEECCCccc---HHHHHHHHHH
Confidence 1 11110 003568899999999 9999988764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-07 Score=74.14 Aligned_cols=129 Identities=17% Similarity=0.266 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc--------c--cccceeeEEEEec--Cc--eEEEEECCCchhh-------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFES--------C--TSLKENVGNFTYE--KK--NIKIVDLPGEDRL------- 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--------~--~t~~~~~~~~~~~--~~--~~~i~D~~G~~~~------- 68 (211)
-.+.++++|.+|.|||||+|.|+....... . .|.........+. +. .++++||||....
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999997754332 1 1333333333332 33 8899999997311
Q ss_pred ------hhhhHHHhh-----------h--cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 69 ------RNKFFDQYK-----------S--SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 69 ------~~~~~~~~~-----------~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
-..-...|+ . +.++++|.+..+.. .+....-.+.+-+. ..+.+|-|+.|+|..
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh--gL~p~Di~~Mk~l~------~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH--GLKPLDIEFMKKLS------KKVNLIPVIAKADTL 171 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC--CCcHhhHHHHHHHh------ccccccceeeccccC
Confidence 000112222 1 47888888876541 13333222222221 127888999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy1914 130 LAKSSSVVKTLLQKELN 146 (211)
Q Consensus 130 ~~~~~~~~~~~l~~~~~ 146 (211)
...+.......+.+.+.
T Consensus 172 T~~El~~~K~~I~~~i~ 188 (366)
T KOG2655|consen 172 TKDELNQFKKRIRQDIE 188 (366)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88777666666665554
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.8e-08 Score=71.05 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
...++++++|.+|+|||||+|++.+..+.... +.++.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 34579999999999999999999987753322 3333334444554 46899999995
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-08 Score=73.62 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc----------ccccccceeeEEEEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF----------ESCTSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~----------~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
.+.+++++|.+|+|||||+|+|.+.... ...|.++.....+.++. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 3468999999999999999999975431 12233333333444433 6899999994
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.68 E-value=8e-08 Score=69.52 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEE--EEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGN--FTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~ 65 (211)
...+++++|.+|+||||++|++.+.......++.+..... +.. +..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-CCCEEEEECcCC
Confidence 4678999999999999999999976654444444433221 222 337999999994
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.2e-08 Score=76.75 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCch
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
...++++++|.+|||||||+|+|.+....... |.++.....+..+ ..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 35689999999999999999999987653333 3333333334443 368999999973
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.66 E-value=7e-08 Score=76.42 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=40.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc--ccccceeeEEEEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES--CTSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
...++++++|.+|+|||||+|+|.+...... .|.++.....+.+. ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 4568999999999999999999998764332 33333333344443 36899999998
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-08 Score=79.62 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=101.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCc------------------ccc----------------cccccceeeEEEE
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSK------------------YFE----------------SCTSLKENVGNFT 51 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~~------------------~~~----------------~~~t~~~~~~~~~ 51 (211)
...+.+++++++|...+||||+-..+.... -.+ ...|++.....++
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 345778999999999999999887775311 000 0023333444566
Q ss_pred ecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc--hhhHHH---HHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 52 YEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV--QKTLRD---VAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
...+++++.|.|||..|..++.... .++|.-++|+.+... +..|+. .++..... ..... ...++++||+
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~Ga-sqAD~~vLvisar~gefetgFerGgQTREha~La---kt~gv--~~lVv~vNKM 227 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGA-SQADLAVLVISARKGEFETGFEKGGQTREHAMLA---KTAGV--KHLIVLINKM 227 (501)
T ss_pred ecceeEEeeccCcccccchhhcccc-chhhhhhhhhhhhhchhhcccccccchhHHHHHH---Hhhcc--ceEEEEEEec
Confidence 6677999999999999998765544 448999999887431 222222 22211111 11122 5689999999
Q ss_pred CccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 127 DQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 127 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
|-+......+.-++...++..... ....+ .-....+++||..+|.+ +++..
T Consensus 228 ddPtvnWs~eRy~E~~~k~~~fLr--~~g~n-----------------------~~~d~~f~p~sg~tG~~---~k~~~ 278 (501)
T KOG0459|consen 228 DDPTVNWSNERYEECKEKLQPFLR--KLGFN-----------------------PKPDKHFVPVSGLTGAN---VKDRT 278 (501)
T ss_pred cCCccCcchhhHHHHHHHHHHHHH--Hhccc-----------------------CCCCceeeecccccccc---hhhcc
Confidence 988766655555554444432111 11100 12337889999999998 76543
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-07 Score=74.27 Aligned_cols=78 Identities=23% Similarity=0.158 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-c-ccc--cccceeeEEEEecCc-----------------eEEEEECCCchh---
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-F-ESC--TSLKENVGNFTYEKK-----------------NIKIVDLPGEDR--- 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~-~~~--~t~~~~~~~~~~~~~-----------------~~~i~D~~G~~~--- 67 (211)
++++++|.||+|||||+|+|++... . ..+ .|+.++.+.+.+.+. .+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 2 334 356677777766541 688999999733
Q ss_pred ----hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 68 ----LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 68 ----~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
.... .-..++.+|++++|+|+.
T Consensus 83 ~g~Glgn~-fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQ-FLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchH-HHHHHHhCCEEEEEEeCC
Confidence 2222 333467799999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=74.86 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
.+.++|.+++|+|+.++..++....+|+..+.. .++|+++|+||+||.+.. .. .. ......
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~------~~ip~iIVlNK~DL~~~~--~~-~~-~~~~~~--------- 135 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA------AGIEPVIVLTKADLLDDE--EE-EL-ELVEAL--------- 135 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH------cCCCEEEEEEHHHCCChH--HH-HH-HHHHHH---------
Confidence 356799999999998865235566666654432 238999999999996441 11 11 110011
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
....+++.+||++|.| +++|.++|.
T Consensus 136 --------------------------~~g~~v~~vSA~~g~g---i~~L~~~L~ 160 (287)
T cd01854 136 --------------------------ALGYPVLAVSAKTGEG---LDELREYLK 160 (287)
T ss_pred --------------------------hCCCeEEEEECCCCcc---HHHHHhhhc
Confidence 0115778899999999 999998875
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.1e-07 Score=76.57 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cc-------------cccccce--eeEEEEe--cCceEEEEECCCchhhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FE-------------SCTSLKE--NVGNFTY--EKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~-------------~~~t~~~--~~~~~~~--~~~~~~i~D~~G~~~~~~ 70 (211)
.-.++.++-....|||||...|....- .. +..+.|. ....+.+ ++..++++|+|||-+|..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 345788999999999999999985331 11 1112222 1222323 455899999999999998
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+ .....+-+|+.++++|+...- ..++...++....+ + ...++|+||+|.
T Consensus 88 e-vssas~l~d~alvlvdvvegv--~~qt~~vlrq~~~~----~--~~~~lvinkidr 136 (887)
T KOG0467|consen 88 E-VSSASRLSDGALVLVDVVEGV--CSQTYAVLRQAWIE----G--LKPILVINKIDR 136 (887)
T ss_pred h-hhhhhhhcCCcEEEEeecccc--chhHHHHHHHHHHc----c--CceEEEEehhhh
Confidence 5 555666799999999997633 23444444443322 2 667899999995
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=76.05 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=63.8
Q ss_pred chhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHH
Q psy1914 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQK 143 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~ 143 (211)
.+.|.. +...+.+.++++++|+|+.+...+. ...+.+.+. +.|+++|+||+|+.+... .....+.+.+
T Consensus 50 ~e~f~~-~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~~-------~~piilV~NK~DLl~k~~~~~~~~~~l~~ 118 (360)
T TIGR03597 50 DDDFLN-LLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFVG-------GNPVLLVGNKIDLLPKSVNLSKIKEWMKK 118 (360)
T ss_pred HHHHHH-HHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHhC-------CCCEEEEEEchhhCCCCCCHHHHHHHHHH
Confidence 456777 6777888899999999998755322 222233221 279999999999975432 2333333322
Q ss_pred HHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCC-cEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 144 ELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYN-QVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..... .. ...++.+||++|.| ++++++.|.+
T Consensus 119 ~~k~~---------------------------------g~~~~~i~~vSAk~g~g---v~eL~~~l~~ 150 (360)
T TIGR03597 119 RAKEL---------------------------------GLKPVDIILVSAKKGNG---IDELLDKIKK 150 (360)
T ss_pred HHHHc---------------------------------CCCcCcEEEecCCCCCC---HHHHHHHHHH
Confidence 22210 00 02468899999999 9999998864
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9e-08 Score=77.26 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=41.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
...+++++|.+|||||||||+|.+.....+. |.++-....+..+. .+.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~-~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD-GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC-CeEEecCCCc
Confidence 4588999999999999999999998764444 43333333444443 5899999997
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-07 Score=73.61 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=58.8
Q ss_pred CCCchh-hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 62 LPGEDR-LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
.|||.. ... -....+..+|++++|+|+.++..... ..+...+. + .|+++|+||+|+.+.. ....
T Consensus 4 fpgHm~k~~~-~~~~~l~~aDvVl~V~Dar~p~~~~~---~~i~~~l~-----~--kp~IiVlNK~DL~~~~---~~~~- 68 (276)
T TIGR03596 4 FPGHMAKARR-EIKEKLKLVDVVIEVLDARIPLSSRN---PMIDEIRG-----N--KPRLIVLNKADLADPA---VTKQ- 68 (276)
T ss_pred ChHHHHHHHH-HHHHHHhhCCEEEEEEeCCCCCCCCC---hhHHHHHC-----C--CCEEEEEEccccCCHH---HHHH-
Confidence 578743 233 24556778999999999987543221 12223321 2 7999999999995321 1111
Q ss_pred HHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 141 LQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+.. ....++.+||++|.| +++|.+.|.+
T Consensus 69 ~~~~~~~-----------------------------------~~~~vi~iSa~~~~g---i~~L~~~i~~ 100 (276)
T TIGR03596 69 WLKYFEE-----------------------------------KGIKALAINAKKGKG---VKKIIKAAKK 100 (276)
T ss_pred HHHHHHH-----------------------------------cCCeEEEEECCCccc---HHHHHHHHHH
Confidence 1111110 003567899999999 9999887754
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-07 Score=73.68 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=58.0
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
.++|.+++|++.. +..++..+..|+.... . .++|+++|+||+||.+..........+ +.+.
T Consensus 119 ANvD~vlIV~s~~-p~~s~~~Ldr~L~~a~-~-----~~i~~VIVlNK~DL~~~~~~~~~~~~~-~~y~----------- 179 (347)
T PRK12288 119 ANIDQIVIVSAVL-PELSLNIIDRYLVACE-T-----LGIEPLIVLNKIDLLDDEGRAFVNEQL-DIYR----------- 179 (347)
T ss_pred EEccEEEEEEeCC-CCCCHHHHHHHHHHHH-h-----cCCCEEEEEECccCCCcHHHHHHHHHH-HHHH-----------
Confidence 4589999999875 4555777777766432 1 238999999999997543222212111 1111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++.+||++|+| +++|+++|..
T Consensus 180 ------------------------~~g~~v~~vSA~tg~G---ideL~~~L~~ 205 (347)
T PRK12288 180 ------------------------NIGYRVLMVSSHTGEG---LEELEAALTG 205 (347)
T ss_pred ------------------------hCCCeEEEEeCCCCcC---HHHHHHHHhh
Confidence 0115779999999999 9999999853
|
|
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=78.45 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=82.2
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
..++-+++|+.|+|..++|||+|+.+++.+.+.....+.+..+.. +..++. .+.+.|-+|+.... |-..+|
T Consensus 24 lsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ------ft~wvd 97 (749)
T KOG0705|consen 24 LSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ------FCQWVD 97 (749)
T ss_pred eecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchhh------hhhhcc
Confidence 356678999999999999999999999999998777666665554 333333 67778888854322 334589
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
++|+||..-+.+ +++.+..+...+..... ...+|+++++++.-.
T Consensus 98 avIfvf~~~d~~-s~q~v~~l~~~l~~~r~--r~~i~l~lvgtqd~i 141 (749)
T KOG0705|consen 98 AVVFVFSVEDEQ-SFQAVQALAHEMSSYRN--ISDLPLILVGTQDHI 141 (749)
T ss_pred ceEEEEEecccc-CHHHHHHHHhhcccccc--cccchHHhhcCcchh
Confidence 999999987744 47666666555544333 234899999986444
|
|
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=74.21 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=72.2
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccc--cccccee-------------------------------------
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFES--CTSLKEN------------------------------------- 46 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~------------------------------------- 46 (211)
+..+.+.||+|.|..++||||++|+++..+..+. .+++..-
T Consensus 104 ~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 104 VLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 3456789999999999999999999997663211 1111000
Q ss_pred -------eEEEEec-C------ceEEEEECCCchh---hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHH-HHHHHHHHc
Q psy1914 47 -------VGNFTYE-K------KNIKIVDLPGEDR---LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDV-AESLYVILA 108 (211)
Q Consensus 47 -------~~~~~~~-~------~~~~i~D~~G~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~ 108 (211)
...+-++ + ..+.++|.||... ... ....+..++|++|+|+.+-+ .+... .+++...-.
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~ts-wid~~cldaDVfVlV~NaEn---tlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTS-WIDSFCLDADVFVLVVNAEN---TLTLSEKQFFHKVSE 259 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhH-HHHHHhhcCCeEEEEecCcc---HhHHHHHHHHHHhhc
Confidence 0000111 1 1678899999742 333 34556677999999998844 34333 344444322
Q ss_pred CcCcCCCCCcEEEEEeCCCccCC
Q psy1914 109 DPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 109 ~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
. +..++|+-||+|....
T Consensus 260 ~------KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 260 E------KPNIFILNNKWDASAS 276 (749)
T ss_pred c------CCcEEEEechhhhhcc
Confidence 1 2668888899998644
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-07 Score=67.69 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccceeeEEEEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
....+++++|.+|+|||||+|++.+... ....+.++.....+.++ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-CCEEEEECCCC
Confidence 4568899999999999999999998653 22223332223333333 47899999994
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.9e-08 Score=76.27 Aligned_cols=157 Identities=14% Similarity=0.180 Sum_probs=94.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc---cccc---cccceeeE--E-EEe----------------------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY---FESC---TSLKENVG--N-FTY---------------------------- 52 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~~---~t~~~~~~--~-~~~---------------------------- 52 (211)
--++|.-+|....||||+++++.+-.. ...- .|+...+. . +.+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 357899999999999999999986321 1000 11110000 0 000
Q ss_pred -cC-----ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHH--HHcCcCcCCCCCcEEEEEe
Q psy1914 53 -EK-----KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYV--ILADPQVQSSRVNILVCCN 124 (211)
Q Consensus 53 -~~-----~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~iiv~n 124 (211)
.+ ..+.++|+|||+-....+.... .-.|+.++++.++.++. ..+..+.+.. +++ + ..++++-|
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGa-AvmDaalLlIA~NEsCP-QPQTsEHLaaveiM~---L----khiiilQN 187 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGA-AVMDAALLLIAGNESCP-QPQTSEHLAAVEIMK---L----KHIIILQN 187 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcch-HHhhhhhhhhhcCCCCC-CCchhhHHHHHHHhh---h----ceEEEEec
Confidence 01 1688999999987655333222 22577888887766432 2233333322 222 1 56899999
Q ss_pred CCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHH
Q psy1914 125 KQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQL 204 (211)
Q Consensus 125 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l 204 (211)
|+||.......+..+++.+.+. -.. ....+++++||.-+.+ |+.+
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~---~t~-----------------------------ae~aPiiPisAQlkyN---Id~v 232 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQ---GTV-----------------------------AEGAPIIPISAQLKYN---IDVV 232 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHh---ccc-----------------------------cCCCceeeehhhhccC---hHHH
Confidence 9999876655544444433222 111 1125789999999999 9999
Q ss_pred HHHHhh
Q psy1914 205 QDWMVT 210 (211)
Q Consensus 205 ~~~i~~ 210 (211)
.++|.+
T Consensus 233 ~eyivk 238 (466)
T KOG0466|consen 233 CEYIVK 238 (466)
T ss_pred HHHHHh
Confidence 999975
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.1e-07 Score=75.60 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
++-+++.++|+.++|||.+++++.++.+.... .+.... +..+...+. .+.+-|.+-. .... +...- ..||++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~-l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF-LTSKE-AACDVA 499 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-cccc-ccCcc-ceeeeE
Confidence 34578999999999999999999998875533 233322 222333333 6667676643 1111 11111 459999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
+++||++++.+ +.-.......--. . .++|+++|++|+|+....
T Consensus 500 ~~~YDsS~p~s-f~~~a~v~~~~~~---~--~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 500 CLVYDSSNPRS-FEYLAEVYNKYFD---L--YKIPCLMVATKADLDEVP 542 (625)
T ss_pred EEecccCCchH-HHHHHHHHHHhhh---c--cCCceEEEeeccccchhh
Confidence 99999998665 4333332222211 1 349999999999997654
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-07 Score=74.58 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+.+-++++||+|+|||||+..|...-...+...+...+..+.-+...+++..+|. .... +..- .+-+|.+++.+|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~-miDv-aKIaDLVlLlId 142 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQ-MIDV-AKIADLVLLLID 142 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHH-HHhH-HHhhheeEEEec
Confidence 35678889999999999999999874433333222222333333334899999993 3333 3332 344899999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
+.-.-. -++.+++ .++....+ .-++-|+|..||....+
T Consensus 143 gnfGfE--METmEFL-nil~~HGm----PrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 143 GNFGFE--METMEFL-NILISHGM----PRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred cccCce--ehHHHHH-HHHhhcCC----CceEEEEeecccccChH
Confidence 964221 2344444 44433332 33778999999986544
|
|
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=66.01 Aligned_cols=128 Identities=22% Similarity=0.263 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc---------c-ccceeeE--EEEecCc--eEEEEECCCchhh-------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC---------T-SLKENVG--NFTYEKK--NIKIVDLPGEDRL------- 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---------~-t~~~~~~--~~~~~~~--~~~i~D~~G~~~~------- 68 (211)
-.++|+++|.+|.|||||+|.+......... | |+..... .+.-++. +++++||||..+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 3689999999999999999999865532211 1 2222221 1233333 8899999997211
Q ss_pred ------hhhhHHHhh------------h--cCCEEEEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 69 ------RNKFFDQYK------------S--SAKGIVYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 69 ------~~~~~~~~~------------~--~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
-..-...|+ . ..++++|.+..+. .+ +... .+.+.++..- +.++-|+.|+|
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hs-LrplDieflkrLt~v-------vNvvPVIakaD 195 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HS-LRPLDIEFLKRLTEV-------VNVVPVIAKAD 195 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-Cc-cCcccHHHHHHHhhh-------heeeeeEeecc
Confidence 000011121 1 2577777776653 11 1111 1222333221 56788889999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~ 146 (211)
-..-.+..+..+.+.+++.
T Consensus 196 tlTleEr~~FkqrI~~el~ 214 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELE 214 (336)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 8877666666666665554
|
|
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-06 Score=69.58 Aligned_cols=115 Identities=15% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc--------cc----------------------------------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFES--------CT---------------------------------------- 41 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--------~~---------------------------------------- 41 (211)
.-+||+++|...+||||.+..+......+. .|
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 457999999999999999999886432110 01
Q ss_pred ---------ccceeeEEEEecCc---eEEEEECCCc-------------hhhhhhhHHHhhhcCCEEEEEEeCCCchhhH
Q psy1914 42 ---------SLKENVGNFTYEKK---NIKIVDLPGE-------------DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTL 96 (211)
Q Consensus 42 ---------t~~~~~~~~~~~~~---~~~i~D~~G~-------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~ 96 (211)
|....+..++++|- .+.++|+||. +.... +...|+.++++||+|+--...+..-
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~-msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFS-ISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHH-HHHHHhcCCCeEEEEeccCCcchhh
Confidence 11111222334433 7889999996 23444 6788999999999998332211101
Q ss_pred HHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 97 RDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..+ .++... +...+.-.|+|++|.|+...
T Consensus 466 SnV----TDLVsq--~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 466 SIV----TDLVSQ--MDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhH----HHHHHh--cCCCCCeeEEEEeecchhhh
Confidence 112 222221 22234778999999999765
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-06 Score=64.51 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--cccc----cccccceeeEEEEec---CceEEEEECCCchhhhh-----hhHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFE----SCTSLKENVGNFTYE---KKNIKIVDLPGEDRLRN-----KFFD 74 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~----~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-----~~~~ 74 (211)
.+-.-|+++|++++|||+|+|+|.+. .+.. ...|.|......... +..+.++||+|...... ....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34457899999999999999999988 5421 123555555544443 45899999999743211 1122
Q ss_pred Hhhhc--CCEEEEEEeCCCchh
Q psy1914 75 QYKSS--AKGIVYVLDSSTVQK 94 (211)
Q Consensus 75 ~~~~~--~d~ii~v~d~~~~~~ 94 (211)
..+.. ++.+|+..+......
T Consensus 85 ~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 85 FALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHHhCEEEEeccCcccHH
Confidence 22233 799999988865443
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-06 Score=69.02 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=39.5
Q ss_pred ceEEEEECCCchhhhhhhH---HHhh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNKFF---DQYK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~---~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++||+|.......+. ..+. -.++.+++|+|+...+....++.. +.... -+--+++||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~-f~~~~---------~~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE-FNEAV---------GIDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH-HHhcC---------CCCEEEEeeecCC
Confidence 3789999999743221111 1111 247899999999765443333322 22211 2346788999986
Q ss_pred CCC
Q psy1914 130 LAK 132 (211)
Q Consensus 130 ~~~ 132 (211)
..-
T Consensus 293 ~~~ 295 (336)
T PRK14974 293 AKG 295 (336)
T ss_pred CCc
Confidence 443
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=62.79 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=37.1
Q ss_pred eEEEEECCCchhhhhhhHHHh--------hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 56 NIKIVDLPGEDRLRNKFFDQY--------KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
...++|+||...... ....+ .-..+.+++++|+......+... ..+...+. .++ ++++||+|
T Consensus 88 d~I~IEt~G~~~p~~-~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~-~~~~~Qi~---~ad-----~ivlnk~d 157 (158)
T cd03112 88 DRIVIETTGLADPGP-VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ-TEAQSQIA---FAD-----RILLNKTD 157 (158)
T ss_pred CEEEEECCCcCCHHH-HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc-HHHHHHHH---HCC-----EEEEeccc
Confidence 678899999864433 22221 12378999999997644433222 22333332 122 56899999
Q ss_pred c
Q psy1914 128 Q 128 (211)
Q Consensus 128 l 128 (211)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-07 Score=65.99 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=35.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc---------cccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC---------TSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~---------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.++++|++|||||||+|.|.......+. ..++.....+.+.+ ...++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT-SEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCccc
Confidence 67899999999999999999986421111 11112233345533 56899999986554
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-06 Score=67.30 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++++|++|+||||++..|..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346789999999999999999874
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.5e-07 Score=70.65 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=58.9
Q ss_pred CCCchh-hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 62 LPGEDR-LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
.|||.. ... -....+..+|++++|+|+.++..... ..+...+. +.|+++|+||+|+.+. .....
T Consensus 7 fpgHm~k~~~-~l~~~l~~aDvIL~VvDar~p~~~~~---~~l~~~~~-------~kp~iiVlNK~DL~~~---~~~~~- 71 (287)
T PRK09563 7 FPGHMAKARR-EIKENLKLVDVVIEVLDARIPLSSEN---PMIDKIIG-------NKPRLLILNKSDLADP---EVTKK- 71 (287)
T ss_pred cHHHHHHHHH-HHHHHhhhCCEEEEEEECCCCCCCCC---hhHHHHhC-------CCCEEEEEEchhcCCH---HHHHH-
Confidence 688743 223 24455678999999999987543221 22233322 2799999999999532 11111
Q ss_pred HHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 141 LQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+.. ....++.+||+++.| +++|.+.|.+
T Consensus 72 ~~~~~~~-----------------------------------~~~~vi~vSa~~~~g---i~~L~~~l~~ 103 (287)
T PRK09563 72 WIEYFEE-----------------------------------QGIKALAINAKKGQG---VKKILKAAKK 103 (287)
T ss_pred HHHHHHH-----------------------------------cCCeEEEEECCCccc---HHHHHHHHHH
Confidence 1111110 003567899999999 9999887754
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.6e-07 Score=73.28 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--c-------ccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC--T-------SLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~--~-------t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.++|+|.+|||||||+|+|.+.....+. + .++....-+.+.+. ..++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~-~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG-GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC-CEEEECCCCCccc
Confidence 4799999999999999999976532211 1 11222233444432 3599999986654
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=61.79 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=32.8
Q ss_pred HhhhcCCEEEEEEeCCCchhhHH-HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLR-DVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
..++++|++++|+|+.++..... ...+++... . .++|+++|+||+|+.+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~--~~k~~iivlNK~DL~~ 56 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----D--PRKKNILLLNKADLLT 56 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----c--CCCcEEEEEechhcCC
Confidence 34677999999999988654221 233333221 1 2389999999999964
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.9e-07 Score=72.19 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--cc-------cceeeEEEEecCceEEEEECCCchhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESC--TS-------LKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t-------~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.++|+|++|||||||+|+|.......+. +. ++....-+.+.+. ..++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g-~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG-GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC-cEEEeCCCcccc
Confidence 4899999999999999999975532211 11 2223344555432 379999997543
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.2e-07 Score=75.53 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-------------cccc--------cccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-------------FESC--------TSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-------------~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-.+|.+.-.-.+||||+-.+.+...- ...+ .|+......+.|.+.+++++|||||..|.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 34688888999999999999873210 0000 11111223356677799999999999988
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK 138 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 138 (211)
-+ ....++-.|+.++|+|+..... .++...|..+.+ .++|.+..+||+|..++.....+.
T Consensus 119 ~E-VeRALrVlDGaVlvl~aV~GVq--sQt~tV~rQ~~r------y~vP~i~FiNKmDRmGa~~~~~l~ 178 (721)
T KOG0465|consen 119 FE-VERALRVLDGAVLVLDAVAGVE--SQTETVWRQMKR------YNVPRICFINKMDRMGASPFRTLN 178 (721)
T ss_pred EE-ehhhhhhccCeEEEEEccccee--hhhHHHHHHHHh------cCCCeEEEEehhhhcCCChHHHHH
Confidence 75 5667788999999999977443 344444555443 239999999999998876655433
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=63.27 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=39.9
Q ss_pred ceEEEEECCCchhhhhhhH---HH---hh-----hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEE
Q psy1914 55 KNIKIVDLPGEDRLRNKFF---DQ---YK-----SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCC 123 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~---~~---~~-----~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 123 (211)
..+.++||||......... .. .. ..++.+++|+|++.....+..+..+.... -+.-+++
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~----------~~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV----------GLTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC----------CCCEEEE
Confidence 4889999999753222111 11 11 13789999999976544344333222111 2457789
Q ss_pred eCCCccCCC
Q psy1914 124 NKQDQTLAK 132 (211)
Q Consensus 124 nK~Dl~~~~ 132 (211)
||.|.....
T Consensus 225 TKlDe~~~~ 233 (272)
T TIGR00064 225 TKLDGTAKG 233 (272)
T ss_pred EccCCCCCc
Confidence 999985443
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=72.03 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=70.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-------cccccccceeeEEEEecCceEEEEECCCchhhhhhhHH--------H
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-------FESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFD--------Q 75 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------~ 75 (211)
..+++++|.+|||||||+|+|.+... .+..|.++.....+.++ ..+.++||||...... +.. .
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~~~~-~~~~l~~~~l~~ 231 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIINSHQ-MAHYLDKKDLKY 231 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCChhH-hhhhcCHHHHhh
Confidence 46899999999999999999997432 22334433344444442 3578999999753321 111 1
Q ss_pred hh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 76 YK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 76 ~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
.. +......+.+|....- +..-..++ +. .......+.+.+++.+..+....+...+.+.+.+.
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~--~~ggl~~~-d~-----~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g 296 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTL--FLGGLARF-DY-----LKGEKTSFTFYVSNELNIHRTKLENADELYNKHLG 296 (360)
T ss_pred cCCCCccCceEEEeCCCCEE--EEceEEEE-EE-----ecCCceEEEEEccCCceeEeechhhhHHHHHhhcC
Confidence 11 2245566666653311 00000000 01 11123678888888888766566655555555543
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=71.49 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-------cccccccceeeEEEEecCceEEEEECCCch
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-------FESCTSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
..+++++|.+|||||||+|+|..... ....|.++.....+.+++ ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 45899999999999999999985431 223344444444455543 35799999984
|
|
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.4e-07 Score=74.41 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=78.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--------cc-----cccc------cccceee--EEEEecCceEEEEECCCchhhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS--------KY-----FESC------TSLKENV--GNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~--------~~-----~~~~------~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
.+|.++....+||||.-.+++.- .. ..+. ..+.... ..+.|++.+++++|||||-.|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 47899999999999999988631 11 0000 1122222 23577888999999999999998
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
+ ...+++--|+++.|||++.... .+....|... .+-++|-+.++||+|...+.
T Consensus 118 e-verclrvldgavav~dasagve--~qtltvwrqa------dk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 118 E-VERCLRVLDGAVAVFDASAGVE--AQTLTVWRQA------DKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred E-HHHHHHHhcCeEEEEeccCCcc--cceeeeehhc------cccCCchhhhhhhhhhhhhh
Confidence 4 7889999999999999987433 2233333332 22348999999999987654
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=67.60 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=36.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc--cc-------ccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES--CT-------SLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~-------t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
..++++|.+|||||||+|+|.+.....+ .+ .++.....+.+.+ -.++||||...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~--~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG--GLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC--cEEEeCCCccccC
Confidence 4789999999999999999997543211 11 1222233344433 4799999986543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=60.56 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=37.6
Q ss_pred ceEEEEECCCchhhhhhh---HHHhh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNKF---FDQYK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~---~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++||||........ +..++ ...+-+++|++++.....+..+......+ -+-=+++||.|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----------~~~~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----------GIDGLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----------STCEEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----------cCceEEEEeecCC
Confidence 369999999963322111 11121 14788999999987555444333332221 1234568999975
Q ss_pred CC
Q psy1914 130 LA 131 (211)
Q Consensus 130 ~~ 131 (211)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.8e-06 Score=77.94 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-----ccc--cc-eeeEEEEecCceEEEEECCCchh--------hhhhhHHHh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFES-----CTS--LK-ENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQY 76 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~-----~~t--~~-~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 76 (211)
=.+|+|++|+||||++++- +-.++-. ..+ .+ ...+.+-+.+ .-.++||+|... ... .|..+
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~-~avliDtaG~y~~~~~~~~~~~~-~W~~f 189 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD-EAVLIDTAGRYTTQDSDPEEDAA-AWLGF 189 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC-CEEEEcCCCccccCCCcccccHH-HHHHH
Confidence 3589999999999999987 3333221 111 11 1222333333 556999999421 112 24443
Q ss_pred h---------hcCCEEEEEEeCCCch--------hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 77 K---------SSAKGIVYVLDSSTVQ--------KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 77 ~---------~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
+ +..++||+++|+.+.- .....++..+.++... -+...|+.+|+||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~---lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ---LGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEecchhh
Confidence 2 3479999999987531 1112333334444332 12349999999999986
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-05 Score=65.42 Aligned_cols=109 Identities=25% Similarity=0.285 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc------Ccc----ccccc------------ccceeeEEE-E-e--------------
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY------SKY----FESCT------------SLKENVGNF-T-Y-------------- 52 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~------~~~----~~~~~------------t~~~~~~~~-~-~-------------- 52 (211)
...|+++|++||||||++..|.. .+. ..++. ..+...... . -
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999872 111 01110 011111110 0 0
Q ss_pred -cCceEEEEECCCchhhhhhhHHH---h--hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 53 -EKKNIKIVDLPGEDRLRNKFFDQ---Y--KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 53 -~~~~~~i~D~~G~~~~~~~~~~~---~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
++..+.++||||.......+... + ...++-+++|+|++-.+.....+ +.+...+ -+--+++||.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a-~~F~~~~---------~~~g~IlTKl 249 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA-KAFKDSV---------DVGSVIITKL 249 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH-HHHHhcc---------CCcEEEEECc
Confidence 13488999999975332212221 1 12478899999997654423222 2222211 3456778888
Q ss_pred Ccc
Q psy1914 127 DQT 129 (211)
Q Consensus 127 Dl~ 129 (211)
|..
T Consensus 250 D~~ 252 (429)
T TIGR01425 250 DGH 252 (429)
T ss_pred cCC
Confidence 864
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG1534|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.1e-06 Score=61.90 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++-.+++||.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 45678999999999999999864
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-06 Score=71.97 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=42.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccccce--eeEEEEecCceEEEEECCCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKE--NVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~ 65 (211)
.+.|.+||.|||||||+||+|.+.+.+....|.|- ...++.+.. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~-~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP-SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC-CceecCCCCc
Confidence 58999999999999999999999987666554443 334444433 6889999996
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-05 Score=65.17 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=56.6
Q ss_pred hhhhhhHHHhhhcCC-EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHHHH
Q psy1914 67 RLRNKFFDQYKSSAK-GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQKE 144 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~~~ 144 (211)
.|.. ..... ...+ .+++|+|+.|...+. ...+.+... +.|+++|+||+||.+... .....+.+...
T Consensus 58 ~~~~-~l~~i-~~~~~lIv~VVD~~D~~~s~---~~~L~~~~~-------~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 58 DFLK-LLNGI-GDSDALVVNVVDIFDFNGSW---IPGLHRFVG-------NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred HHHH-HHHhh-cccCcEEEEEEECccCCCch---hHHHHHHhC-------CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 4554 34433 3345 899999998855322 223333321 279999999999975332 22222222211
Q ss_pred HHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 145 LNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.... + .....++.+||++|.| ++++++.|.+
T Consensus 126 ~k~~---------g-----------------------~~~~~v~~vSAk~g~g---I~eL~~~I~~ 156 (365)
T PRK13796 126 AKEL---------G-----------------------LRPVDVVLISAQKGHG---IDELLEAIEK 156 (365)
T ss_pred HHhc---------C-----------------------CCcCcEEEEECCCCCC---HHHHHHHHHH
Confidence 1100 0 0012568899999999 9999998854
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.3e-05 Score=53.57 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..+||++.|+|||||||++.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4568999999999999999999885
|
|
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.6e-06 Score=62.30 Aligned_cols=86 Identities=23% Similarity=0.240 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchhhhh------hhHHHhhhcCC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLRN------KFFDQYKSSAK 81 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~~~~d 81 (211)
..||.++|-|.+||||++..+.+-.. ...+ .|...-.+.+.+++-.+.+.|+||.-.-.. .-.-...+.|+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 35899999999999999999986432 2222 222223345678888999999999732111 00111235689
Q ss_pred EEEEEEeCCCchhhH
Q psy1914 82 GIVYVLDSSTVQKTL 96 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~ 96 (211)
.+++|+|+..|-++-
T Consensus 139 li~~vld~~kp~~hk 153 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHK 153 (358)
T ss_pred EEEEEeeccCcccHH
Confidence 999999998876533
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-06 Score=66.24 Aligned_cols=56 Identities=27% Similarity=0.252 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc------ccc---cccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF------ESC---TSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~------~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
..+++|.+|||||||+|+|...... ... ..++.....+.+++ .=.++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-gG~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-GGWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-CCEEEeCCCCCccC
Confidence 6789999999999999999864321 111 12222333455532 23589999986554
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.7e-06 Score=64.59 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=37.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc--c-------ccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC--T-------SLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~-------t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
..++++|++|+|||||+|.|.+....... + .++.....+.+.+ ...++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 57999999999999999999975532211 1 1122223344432 34699999986543
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=64.39 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=36.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc--c-------ccceeeEEEEecCceEEEEECCCchhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC--T-------SLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~-------t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
...++++|++|+|||||+|+|.+.....+. + .++.....+.+++ ...++||||...+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCcc
Confidence 457899999999999999999975432211 1 0112222333433 3488999998643
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00019 Score=59.20 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=74.1
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCc-----------------ccccc-----cccc----eeeE-EEEecCc---
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSK-----------------YFESC-----TSLK----ENVG-NFTYEKK--- 55 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~~-----------------~~~~~-----~t~~----~~~~-~~~~~~~--- 55 (211)
.|....+=|.++||..+|||||++||..-- .++.. .|+. ++.. .+.+++.
T Consensus 12 ~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~ 91 (492)
T PF09547_consen 12 ERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKV 91 (492)
T ss_pred HhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceE
Confidence 345567889999999999999999998511 11111 1222 2222 3556543
Q ss_pred eEEEEECCCch-------------hhhhh--------hHHH-------hh-hc-CCEEEEEEeCCC---chhhHHHHHHH
Q psy1914 56 NIKIVDLPGED-------------RLRNK--------FFDQ-------YK-SS-AKGIVYVLDSST---VQKTLRDVAES 102 (211)
Q Consensus 56 ~~~i~D~~G~~-------------~~~~~--------~~~~-------~~-~~-~d~ii~v~d~~~---~~~~~~~~~~~ 102 (211)
++.++|+.|.. ++-.. +... .+ .+ .=++++--|.|- +...+.++.+.
T Consensus 92 kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEer 171 (492)
T PF09547_consen 92 KVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEER 171 (492)
T ss_pred EEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHH
Confidence 88999998851 11000 0000 11 12 234444456652 22335555554
Q ss_pred HHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 103 LYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 103 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
...-|+. -++|+++++|-.+ +...+..+..+.++++++
T Consensus 172 vI~ELk~-----igKPFvillNs~~-P~s~et~~L~~eL~ekY~ 209 (492)
T PF09547_consen 172 VIEELKE-----IGKPFVILLNSTK-PYSEETQELAEELEEKYD 209 (492)
T ss_pred HHHHHHH-----hCCCEEEEEeCCC-CCCHHHHHHHHHHHHHhC
Confidence 4444433 2389999999665 334445556666665555
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.9e-05 Score=62.37 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=53.3
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
..++|.+++|+++.. .-.......++..+.. .++|.++|+||+||.+. .....+.+...
T Consensus 110 aANvD~vliV~s~~p-~~~~~~ldr~L~~a~~------~~i~piIVLNK~DL~~~--~~~~~~~~~~~------------ 168 (356)
T PRK01889 110 AANVDTVFIVCSLNH-DFNLRRIERYLALAWE------SGAEPVIVLTKADLCED--AEEKIAEVEAL------------ 168 (356)
T ss_pred EEeCCEEEEEEecCC-CCChhHHHHHHHHHHH------cCCCEEEEEEChhcCCC--HHHHHHHHHHh------------
Confidence 356899999999853 3223344444444332 22788999999999743 11111222110
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
...++++.+|+++|+| +++|.++|.
T Consensus 169 -------------------------~~g~~Vi~vSa~~g~g---l~~L~~~L~ 193 (356)
T PRK01889 169 -------------------------APGVPVLAVSALDGEG---LDVLAAWLS 193 (356)
T ss_pred -------------------------CCCCcEEEEECCCCcc---HHHHHHHhh
Confidence 1115778899999999 999999985
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=60.58 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-c---ccc--ccc------------------ceeeEEE-----------EecC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-F---ESC--TSL------------------KENVGNF-----------TYEK 54 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~---~~~--~t~------------------~~~~~~~-----------~~~~ 54 (211)
.+-.++++|++||||||++.+|..... . ... .+. +...... .+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 345789999999999999999975321 0 000 000 1111111 1234
Q ss_pred ceEEEEECCCchhhhhh---hHHHh--hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNK---FFDQY--KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~---~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++||+|....... ....+ ...+.-.++|++++.....+.++...+......+...-. -+-=+++||.|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~-~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALP-DLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccC-CCCEEEEeccccC
Confidence 48999999997533221 11111 122455688999977554455554444444321110000 1234667998875
Q ss_pred C
Q psy1914 130 L 130 (211)
Q Consensus 130 ~ 130 (211)
.
T Consensus 295 ~ 295 (374)
T PRK14722 295 S 295 (374)
T ss_pred C
Confidence 4
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.1e-05 Score=59.74 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=68.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc------------------cccceee-----EE--EEec---------------
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESC------------------TSLKENV-----GN--FTYE--------------- 53 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~t~~~~~-----~~--~~~~--------------- 53 (211)
.++.|-=|||||||++.++...-.... ...+... ++ ++.+
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 467888999999999999964421111 0111111 11 1211
Q ss_pred CceEEEEECCCchhhhhhhHHHhhh--------cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKS--------SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
.....++.+.|.....+ ....+.. ..|+++.|+|+...........+.....+. +++ ++++||
T Consensus 84 ~~D~ivIEtTGlA~P~p-v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD-----~ivlNK 154 (323)
T COG0523 84 RPDRLVIETTGLADPAP-VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FAD-----VIVLNK 154 (323)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCc-----EEEEec
Confidence 11567888888754433 1222211 258899999997755434434445555443 233 788999
Q ss_pred CCccCCCCHHHHHHHHH
Q psy1914 126 QDQTLAKSSSVVKTLLQ 142 (211)
Q Consensus 126 ~Dl~~~~~~~~~~~~l~ 142 (211)
.|+.++.........+.
T Consensus 155 ~Dlv~~~~l~~l~~~l~ 171 (323)
T COG0523 155 TDLVDAEELEALEARLR 171 (323)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99997765444444443
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00031 Score=51.55 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=38.6
Q ss_pred ceEEEEECCCchhhhhhh---HHHhh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNKF---FDQYK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~---~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++|+||........ ...+. ...+.+++|+|+....... +....+.+.. + ..-++.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~----~~~~~~~~~~---~---~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV----NQAKAFNEAL---G---ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH----HHHHHHHhhC---C---CCEEEEECCcCC
Confidence 368899999974322111 11111 2489999999996543322 3333333221 1 246677999986
Q ss_pred CCC
Q psy1914 130 LAK 132 (211)
Q Consensus 130 ~~~ 132 (211)
...
T Consensus 153 ~~~ 155 (173)
T cd03115 153 ARG 155 (173)
T ss_pred CCc
Confidence 543
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.1e-05 Score=61.58 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||++..|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999974
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=53.54 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=40.1
Q ss_pred eEEEEECCCchhhhhhh------HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 56 NIKIVDLPGEDRLRNKF------FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~------~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
...++.+.|...... + ....+ ..+.+|.|+|+..... .......+...+.. ++ ++++||+|+.
T Consensus 86 d~IiIE~sG~a~p~~-l~~~~~~~~~~~-~~~~iI~vVDa~~~~~-~~~~~~~~~~Qi~~---AD-----vIvlnK~D~~ 154 (178)
T PF02492_consen 86 DRIIIETSGLADPAP-LILQDPPLKEDF-RLDSIITVVDATNFDE-LENIPELLREQIAF---AD-----VIVLNKIDLV 154 (178)
T ss_dssp SEEEEEEECSSGGGG-HHHHSHHHHHHE-SESEEEEEEEGTTHGG-HTTHCHHHHHHHCT----S-----EEEEE-GGGH
T ss_pred CEEEECCccccccch-hhhccccccccc-cccceeEEeccccccc-cccchhhhhhcchh---cC-----EEEEeccccC
Confidence 677888988654433 2 11122 3689999999976432 33444455555542 23 7789999998
Q ss_pred CCC
Q psy1914 130 LAK 132 (211)
Q Consensus 130 ~~~ 132 (211)
+..
T Consensus 155 ~~~ 157 (178)
T PF02492_consen 155 SDE 157 (178)
T ss_dssp HHH
T ss_pred Chh
Confidence 665
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.3e-05 Score=64.93 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc--cccccceeeEEEEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE--SCTSLKENVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~ 65 (211)
++.+++.|+|.+|+||||+||+|...+.-. ..|+++.....+.++ ..+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CCceeccCCce
Confidence 567999999999999999999999877633 334443333344443 47899999997
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00019 Score=56.85 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=59.9
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
.+.|-+++|+.+.+|+-+...+.+++...-. . ++..++++||+||.+...... +.+...+.
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~--gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~----------- 138 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----G--GIEPVIVLNKIDLLDDEEAAV--KELLREYE----------- 138 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHH----c--CCcEEEEEEccccCcchHHHH--HHHHHHHH-----------
Confidence 3478888888888887656666666655532 2 277788899999987655443 22222222
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
...+.++.+|+++++| +++|.+++.
T Consensus 139 ------------------------~~gy~v~~~s~~~~~~---~~~l~~~l~ 163 (301)
T COG1162 139 ------------------------DIGYPVLFVSAKNGDG---LEELAELLA 163 (301)
T ss_pred ------------------------hCCeeEEEecCcCccc---HHHHHHHhc
Confidence 1227889999999999 999998875
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0001 Score=61.89 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++|+||||.+..|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456789999999999999988863
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.6e-05 Score=62.20 Aligned_cols=24 Identities=33% Similarity=0.228 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-+++++|++|+||||++..|..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0002 Score=57.81 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+-.++.|.-|||||||+|+++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34678899999999999999854
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00027 Score=58.06 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++-.|+++||+||||||-+-.|...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3677999999999999988887753
|
|
| >KOG0780|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.6e-05 Score=61.28 Aligned_cols=94 Identities=24% Similarity=0.374 Sum_probs=54.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc----------ccc-------------cccceeeEEE--------------
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF----------ESC-------------TSLKENVGNF-------------- 50 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~----------~~~-------------~t~~~~~~~~-------------- 50 (211)
+.+.--|+++|..|+||||.+-.|...... .++ .+--+-++.+
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 344556899999999999988887641100 000 0011112221
Q ss_pred --EecCceEEEEECCCchhhhhhhHHHhh-----hcCCEEEEEEeCCCchhhHHHHHH
Q psy1914 51 --TYEKKNIKIVDLPGEDRLRNKFFDQYK-----SSAKGIVYVLDSSTVQKTLRDVAE 101 (211)
Q Consensus 51 --~~~~~~~~i~D~~G~~~~~~~~~~~~~-----~~~d~ii~v~d~~~~~~~~~~~~~ 101 (211)
.-++..+.|+||.|-+.....+..... -++|-+|+|+|++-.+....++..
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~a 235 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARA 235 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHH
Confidence 112348999999997543332333322 248999999999876653444443
|
|
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.4e-05 Score=60.20 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=41.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-------cccccccceeeEE-EEecCc-eEEEEECCCc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY-------FESCTSLKENVGN-FTYEKK-NIKIVDLPGE 65 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~-------~~~~~t~~~~~~~-~~~~~~-~~~i~D~~G~ 65 (211)
...++.++++|-||+|||||+|++..... ....|.....+.. +.+... .+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 34689999999999999999999875332 1222444444444 555444 8999999997
|
|
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=56.51 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=72.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccc-----ccccceeeEEEEecCc----eEEEEECCCch-------hhhh----
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFES-----CTSLKENVGNFTYEKK----NIKIVDLPGED-------RLRN---- 70 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~----~~~i~D~~G~~-------~~~~---- 70 (211)
.++|+-+|.+|.|||||+..|.+-.+... .|+......++.+... .++++||.|.. +|.+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 47899999999999999999998776332 2455555555544432 78899999961 1111
Q ss_pred --hhHHH-------------hhh--cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 71 --KFFDQ-------------YKS--SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 71 --~~~~~-------------~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.-... ++. ..++.++.+..+. . ++....-...+-+. +++.+|-|+-|.|-....+
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H-~LKslDLvtmk~Ld------skVNIIPvIAKaDtisK~e 193 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-H-SLKSLDLVTMKKLD------SKVNIIPVIAKADTISKEE 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-c-chhHHHHHHHHHHh------hhhhhHHHHHHhhhhhHHH
Confidence 00111 122 2466666665543 2 23333222222221 2367788889999876555
Q ss_pred HHHHHHHHHHHH
Q psy1914 134 SSVVKTLLQKEL 145 (211)
Q Consensus 134 ~~~~~~~l~~~~ 145 (211)
.......+..++
T Consensus 194 L~~FK~kimsEL 205 (406)
T KOG3859|consen 194 LKRFKIKIMSEL 205 (406)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
|
|
| >KOG1533|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00013 Score=55.35 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=39.0
Q ss_pred eEEEEECCCchh-------hhhhhHHHhhhcCCEEEE---EEeC---CCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEE
Q psy1914 56 NIKIVDLPGEDR-------LRNKFFDQYKSSAKGIVY---VLDS---STVQKTLRDVAESLYVILADPQVQSSRVNILVC 122 (211)
Q Consensus 56 ~~~i~D~~G~~~-------~~~~~~~~~~~~~d~ii~---v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 122 (211)
.+.++|+|||-. ... +.+ +++..+.-+. .+|+ ++|...+......+..++. ...|=+=|
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~-I~~-~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~------melphVNv 169 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNK-IFR-KLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH------MELPHVNV 169 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHH-HHH-HHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh------hcccchhh
Confidence 789999999832 122 222 2333444333 3444 3455544444444444443 23788889
Q ss_pred EeCCCccCCC
Q psy1914 123 CNKQDQTLAK 132 (211)
Q Consensus 123 ~nK~Dl~~~~ 132 (211)
+.|+|+...-
T Consensus 170 lSK~Dl~~~y 179 (290)
T KOG1533|consen 170 LSKADLLKKY 179 (290)
T ss_pred hhHhHHHHhh
Confidence 9999997543
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00044 Score=59.09 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-.++++|++|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988874
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0003 Score=59.05 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~ 32 (211)
...|+++|++||||||++-.|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999999766665
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=61.85 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++||||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34689999999999999999885
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0003 Score=57.41 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-.++.|.-|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3678899999999999999853
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=67.25 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=63.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc-cccc-----cccceeeEEEEecCceEEEEECCCchh--------hhhhhHHHh---
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKY-FESC-----TSLKENVGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQY--- 76 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~-~~~~-----~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~--- 76 (211)
-+++|++|+||||++..--..-. .... ...+...+.+-+. ..-.++||+|-.. -.. .|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~-deaVlIDtaGry~~q~s~~~~~~~-~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFT-DEAVLIDTAGRYITQDSADEVDRA-EWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccc-cceEEEcCCcceecccCcchhhHH-HHHHHHHH
Confidence 48899999999999886443221 1111 1222222322222 2667899998521 122 34433
Q ss_pred ------hhcCCEEEEEEeCCCch--------hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 77 ------KSSAKGIVYVLDSSTVQ--------KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 77 ------~~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+..++||+.+|+++.- .....++.-+.++...- +...|+.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL---~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL---HARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh---ccCCceEEEEecccccc
Confidence 13479999999987521 11222333334443321 13499999999999975
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00045 Score=57.43 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999974
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00037 Score=62.01 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++||||||.+..|..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 34689999999999999999885
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00044 Score=58.00 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~ 32 (211)
...++++|++|+||||.+-.|.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4578999999999999966665
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=57.76 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...++++|++||||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00088 Score=43.60 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=44.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+++.|..|+|||++...+...-... +.+... ++ .+.++|+++...............+|.++++++...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-----g~~v~~--~~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-----GKRVLL--ID--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA 70 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEE--EC--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch
Confidence 6788999999999999887532111 111211 22 688999998754332001334566899999998865
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.001 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++|+||||.+..+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988863
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00027 Score=41.52 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 80 AKGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
+++++|++|.|..+. ++++....+..+.. .+.+ .|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~--~F~~--~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKP--LFPN--KPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHH--HTTT--S-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHH--HcCC--CCEEEEEeccC
Confidence 689999999997443 35555566566543 2334 99999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=59.68 Aligned_cols=88 Identities=23% Similarity=0.206 Sum_probs=52.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEec--CceEEEEECCCchhhhh-hhHHHhhhcCCEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE--KKNIKIVDLPGEDRLRN-KFFDQYKSSAKGIV 84 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~~d~ii 84 (211)
.++.+.|.++|.+|+||||+||.|...+.-...|-.|. ...+.|- -+.+.++|+||.--... .-....+ .+++
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE-TKVWQYItLmkrIfLIDcPGvVyps~dset~ivL---kGvV 379 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE-TKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL---KGVV 379 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc-chHHHHHHHHhceeEecCCCccCCCCCchHHHHh---hcee
Confidence 46789999999999999999999998776444332221 1111111 12788999999732211 0122222 3455
Q ss_pred EEEeCCCchhhHHHH
Q psy1914 85 YVLDSSTVQKTLRDV 99 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~ 99 (211)
-|=.+.+|+.++..+
T Consensus 380 RVenv~~pe~yi~~v 394 (572)
T KOG2423|consen 380 RVENVKNPEDYIDGV 394 (572)
T ss_pred eeeecCCHHHHHHHH
Confidence 555666666544443
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998754
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00067 Score=56.99 Aligned_cols=23 Identities=39% Similarity=0.372 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++||||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999998887753
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00022 Score=52.20 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
+|++.|++|+|||||+++++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999885
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0001 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
|
... |
| >KOG2743|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00057 Score=53.84 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=66.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc-------------------cc-cc--------eeeEE--EEec----------
Q psy1914 14 VLLSGLSLSGKTLLFARLVYSKYFESC-------------------TS-LK--------ENVGN--FTYE---------- 53 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~~~~~~~-------------------~t-~~--------~~~~~--~~~~---------- 53 (211)
=++.|.=|+|||||+|.++.+.-.... .. .+ .+.++ ++++
T Consensus 60 tIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvraie~l 139 (391)
T KOG2743|consen 60 TIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRAIENL 139 (391)
T ss_pred EEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHHHHHH
Confidence 367899999999999999975421111 00 01 01111 2332
Q ss_pred ----Cc-eEEEEECCCchhhhhhhHHHhhh--------cCCEEEEEEeCCCchhhHHHH--HHHHHHHHcCcCcCCCCCc
Q psy1914 54 ----KK-NIKIVDLPGEDRLRNKFFDQYKS--------SAKGIVYVLDSSTVQKTLRDV--AESLYVILADPQVQSSRVN 118 (211)
Q Consensus 54 ----~~-~~~i~D~~G~~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p 118 (211)
++ ...+..|.|.....+ +...++. .-|+++-|+|+-.....+.+. ..++.....+-.+++
T Consensus 140 vqkkGkfD~IllETTGlAnPaP-ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~AD---- 214 (391)
T KOG2743|consen 140 VQKKGKFDHILLETTGLANPAP-IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALAD---- 214 (391)
T ss_pred HhcCCCcceEEEeccCCCCcHH-HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhhh----
Confidence 22 677899999866555 3333321 259999999985422111111 111222211111222
Q ss_pred EEEEEeCCCccCCCCHHHHHHHHH
Q psy1914 119 ILVCCNKQDQTLAKSSSVVKTLLQ 142 (211)
Q Consensus 119 ~iiv~nK~Dl~~~~~~~~~~~~l~ 142 (211)
-+++||.||........+.+.+.
T Consensus 215 -~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 215 -RIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred -eeeeccccccCHHHHHHHHHHHH
Confidence 35689999998766665555544
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00055 Score=50.22 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
..-+.++|++|||||||+.++...-. ..+..++.+...+..+.+ |.+|...++. ...+|+.++++
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~-----~~g~~vg~Ik~~~~~~~~-d~~g~Ds~~~-----r~aGA~~v~~~ 70 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMDV-DKPGKDSYEL-----RKAGAAQTLVA 70 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh-----hcCCeEEEEEEcCCCccc-CCCCcHHHHH-----HHhCCcEEEEE
Confidence 34689999999999999999986321 123345556555444444 7787655443 12456665543
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0003 Score=51.75 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=27.8
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHH--HcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVI--LADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
|++++|+|+.++..... ..+.+. +.. .+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~---~~i~~~~~l~~-----~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC---PQVEEAVLQAG-----GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC---HHHHHHHHhcc-----CCCCEEEEEehhhcCCH
Confidence 78999999987543221 122222 221 23899999999999643
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00029 Score=59.11 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------------ccccc-----cccceeeEEEE----e--------------cCce
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK------------YFESC-----TSLKENVGNFT----Y--------------EKKN 56 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~------------~~~~~-----~t~~~~~~~~~----~--------------~~~~ 56 (211)
.+.-++-....|||||-..|..+. |..+. ..++.....+. . ++.-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 456788899999999999997532 11111 01111111111 0 1227
Q ss_pred EEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
++++|.|||-.|.++ ....++-.|+.+.|+|..+.. .-++...+...+... +.-++++||.|..
T Consensus 100 iNLIDSPGHVDFSSE-VTAALRVTDGALVVVDcv~Gv--CVQTETVLrQA~~ER------IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSE-VTAALRVTDGALVVVDCVSGV--CVQTETVLRQAIAER------IKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCcccchhh-hhheeEeccCcEEEEEccCce--EechHHHHHHHHHhh------ccceEEeehhhHH
Confidence 899999999999996 666788899999999997733 234444455554432 4446789999963
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00046 Score=57.03 Aligned_cols=92 Identities=26% Similarity=0.354 Sum_probs=53.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc----Ccc------cccc-c-------ccceeeE--EEE----------------
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY----SKY------FESC-T-------SLKENVG--NFT---------------- 51 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~----~~~------~~~~-~-------t~~~~~~--~~~---------------- 51 (211)
.++...|+++|..||||||.+-.|.. ... ..+| | +.+..++ .+.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 34567899999999999998877763 110 0111 0 1111110 010
Q ss_pred ---ecCceEEEEECCCchhhhhhhHHHh-----hhcCCEEEEEEeCCCchhhHHHH
Q psy1914 52 ---YEKKNIKIVDLPGEDRLRNKFFDQY-----KSSAKGIVYVLDSSTVQKTLRDV 99 (211)
Q Consensus 52 ---~~~~~~~i~D~~G~~~~~~~~~~~~-----~~~~d~ii~v~d~~~~~~~~~~~ 99 (211)
-....+.++||+|-......+.... .-++|=+++|+|+.-.+.....+
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A 232 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTA 232 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHH
Confidence 1123799999999754433333221 22489999999998766533333
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=48.91 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=35.8
Q ss_pred eEEEEEC-CCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 56 NIKIVDL-PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 56 ~~~i~D~-~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
.+.++|| +|.+-|.+ ...+++|.+|.|+|.+- .+ +..+. .+.++-..-. - .++.+|+||.|-.
T Consensus 135 e~VivDtEAGiEHfgR----g~~~~vD~vivVvDpS~-~s-l~tae-ri~~L~~elg--~--k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGR----GTIEGVDLVIVVVDPSY-KS-LRTAE-RIKELAEELG--I--KRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhcc----ccccCCCEEEEEeCCcH-HH-HHHHH-HHHHHHHHhC--C--ceEEEEEeeccch
Confidence 3445555 34443333 23467999999999975 22 32222 2233322211 1 6899999999854
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00087 Score=52.84 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-+++++|++|+||||++..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 446999999999999999998864
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00023 Score=42.78 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+|.|+.|||||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00019 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.||+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999863
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.009 Score=44.15 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.+.-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345589999999999999999998743
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00022 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.||+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999976
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0004 Score=50.36 Aligned_cols=51 Identities=31% Similarity=0.458 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.+.++|++|||||||+.++... ....+.+++.+......+.+ |.+|...++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~-----l~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA-----LSARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----HHHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 5889999999999999999852 12334456667666655444 788866555
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00023 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.||+|+|++|||||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00021 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.248 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
-++|+|++|||||||+|.+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999987633
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.016 Score=40.88 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=57.4
Q ss_pred EEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEec------CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 15 LLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE------KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 15 ~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+.-|..|+|||++.-.+...-. .. +.....+..+ ...+.++|+|+... . .....+..+|.++++++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~----~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~-~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KL----GKRVLLLDADLGLANLDYDYIIIDTGAGIS--D-NVLDFFLAADEVIVVTT 75 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HC----CCcEEEEECCCCCCCCCCCEEEEECCCCCC--H-HHHHHHHhCCeEEEEcC
Confidence 4557889999998777653211 10 1111111111 04789999997532 2 23446778999999998
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
.+. .+ +......+..+.... . ..++.+|+|+.+-
T Consensus 76 ~~~-~s-~~~~~~~l~~l~~~~--~--~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PEP-TS-ITDAYALIKKLAKQL--R--VLNFRVVVNRAES 109 (139)
T ss_pred CCh-hH-HHHHHHHHHHHHHhc--C--CCCEEEEEeCCCC
Confidence 854 22 444444443332211 1 2578899999863
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=48.22 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
+.=.++++||+|+|||+|++.++.-.. | ..+++.++|..++ +.+-+.|+.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lis----p----~~G~l~f~Ge~vs---~~~pea~Rq 77 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLIS----P----TSGTLLFEGEDVS---TLKPEAYRQ 77 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccC----C----CCceEEEcCcccc---ccChHHHHH
Confidence 345789999999999999999985221 2 2355666666533 344455555
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0072 Score=40.23 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=48.8
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCcccccccccceeeEEEEecC-ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 14 VLLSG-LSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEK-KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 14 i~i~G-~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
|++.| ..|+||||+...+...-.. .+.+...+..+. ..+.++|+|+...... ...+..+|.++++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~~---~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLLT---RNALAAADLVLIPVQPSP 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHHH---HHHHHHCCEEEEeccCCH
Confidence 56666 5699999988877642211 111222232222 3789999998754332 245667999999998854
Q ss_pred chhhHHHHHHHHH
Q psy1914 92 VQKTLRDVAESLY 104 (211)
Q Consensus 92 ~~~~~~~~~~~~~ 104 (211)
.+ +....+.+.
T Consensus 74 -~s-~~~~~~~~~ 84 (104)
T cd02042 74 -LD-LDGLEKLLE 84 (104)
T ss_pred -HH-HHHHHHHHH
Confidence 22 445444443
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00029 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-|+++|++|||||||++.+.+=
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00031 Score=49.65 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
|+++|++||||||++.++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
|
... |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00034 Score=52.70 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++||+|||||||+.++.+=+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 34468999999999999999998643
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.004 Score=44.34 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc-eEEE-EECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKI-VDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~i-~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.-.++++|++|+|||||++.+.+-..+. .+.+.+++. .+.+ ...+|-...+-.+......+++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--------~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD--------EGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCC--------ceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34568999999999999999998743221 233444433 2222 22444444333355556666764443
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0022 Score=53.40 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccccccc-------ccc-----------------------eee---------EEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCT-------SLK-----------------------ENV---------GNFT 51 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-------t~~-----------------------~~~---------~~~~ 51 (211)
.-||+|+||.|+|||||+..|++.--+.... .+| ++. +.+-
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 3589999999999999999998743221110 000 000 0000
Q ss_pred e--cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 52 Y--EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 52 ~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+ ...++.+.|+.|-...+..+...++..+|++|+=
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILD 729 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILD 729 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEec
Confidence 0 1127889999887766665677778888877663
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00039 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.-.++|+|+.|+|||||++.+++..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 44578999999999999999988743
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00043 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+..|+|.|++||||||+++.+..
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhh
Confidence 3467899999999999999999986
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.001 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+..++|.|++||||||++++|+..
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999863
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00044 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.=+++|+|++|+|||||+|-+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 45799999999999999999876
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00054 Score=42.32 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|++.|++||||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999863
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=53.05 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.+.++++.|++||||||++++|+..
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999864
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=52.94 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=42.2
Q ss_pred EECCCch-hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 60 VDLPGED-RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 60 ~D~~G~~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
-+.||+. ++.. ........+|+++.|+|+.+|..+.. ..+.++... .|.++|+||+||.+...
T Consensus 15 ~~~~g~~~k~~~-~~~~~~~~~d~vvevvDar~P~~s~~---~~l~~~v~~-------k~~i~vlNK~DL~~~~~ 78 (322)
T COG1161 15 QWFPGHMKKAKR-QLKEVLKSVDVVVEVVDARDPLGTRN---PELERIVKE-------KPKLLVLNKADLAPKEV 78 (322)
T ss_pred cCCCCchHHHHH-HHHHhcccCCEEEEEEeccccccccC---ccHHHHHcc-------CCcEEEEehhhcCCHHH
Confidence 3458874 4444 45666788999999999999765332 222333322 56699999999986544
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0004 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00062 Score=48.30 Aligned_cols=66 Identities=27% Similarity=0.284 Sum_probs=36.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc-eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
+.|+|+|+.|||||||+..|++.-.. .+.....+.-.+. .. -+|.||.+.++ . ..+|+.+++..+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-----~g~~v~~ik~~~~g~~-~~d~pG~Dt~r-----~-~aGA~~~~~~~~~ 67 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-----RGYRVAVIKHTDHGQF-EIDPPGTDTWR-----F-KAGADVVLVSSDE 67 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-----TT--EEEEEE-STTST-TCSTTCHHHHH-----H-HCT-SEEEEECSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-----cCCceEEEEEccCCCc-ccCCCCccccc-----c-cccceEEEEEcCC
Confidence 36899999999999999999863221 1222332211111 10 15667764333 2 3567777776554
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00059 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++..-|+++|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999985
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00092 Score=54.94 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-+++++|.+|+|||||+|.+++..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhc
Confidence 4589999999999999999999744
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00061 Score=48.16 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|+++|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.004 Score=49.96 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-------cc---------------cceeeEE---------EEe-----
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-------TS---------------LKENVGN---------FTY----- 52 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-------~t---------------~~~~~~~---------~~~----- 52 (211)
.+..-++++|-.|+||||-+-.|...-..... .| .+..+-. +-|
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 34678999999999999998888742110000 00 1111110 111
Q ss_pred ---cCceEEEEECCCchhhhhhhHHH------hhhc-----CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc
Q psy1914 53 ---EKKNIKIVDLPGEDRLRNKFFDQ------YKSS-----AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN 118 (211)
Q Consensus 53 ---~~~~~~i~D~~G~~~~~~~~~~~------~~~~-----~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 118 (211)
++..+.++||+|--....++... .... ++-+++++|++-.++.+.++..+ .+... -
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~eav~---------l 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NEAVG---------L 286 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HHhcC---------C
Confidence 23489999999963222212211 1222 23388888999888767666554 44321 1
Q ss_pred EEEEEeCCCcc
Q psy1914 119 ILVCCNKQDQT 129 (211)
Q Consensus 119 ~iiv~nK~Dl~ 129 (211)
-=+++||.|-.
T Consensus 287 ~GiIlTKlDgt 297 (340)
T COG0552 287 DGIILTKLDGT 297 (340)
T ss_pred ceEEEEecccC
Confidence 24678999954
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00073 Score=51.20 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..+...|+|.|++|||||||.+.|...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999863
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00075 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+|+|+|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0084 Score=46.31 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+-..+++.|..|+||||+++++..
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHH
Confidence 3456899999999999999999986
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00088 Score=46.43 Aligned_cols=27 Identities=33% Similarity=0.237 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF 37 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~ 37 (211)
...++++|++|+|||+++..+...-..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 357899999999999999999875443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00056 Score=50.94 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.+-.++++|++||||||+++.+++-
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44678999999999999999999864
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0007 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.++++|++||||||++++|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998763
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00079 Score=45.28 Aligned_cols=22 Identities=41% Similarity=0.369 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~ 32 (211)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3468999999999999999986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00083 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.251 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00085 Score=49.92 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-.++++|++|||||||++.|...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999764
|
|
| >KOG4273|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0037 Score=48.17 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCC--CHHHHHHHHHcCcccccccc-cceeeEEEEecCc----eEEEEECCCc-hhhhhhhHHHhhhcCCE
Q psy1914 11 QKVVLLSGLSLS--GKTLLFARLVYSKYFESCTS-LKENVGNFTYEKK----NIKIVDLPGE-DRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 11 ~~ki~i~G~~~~--GKSsli~~l~~~~~~~~~~t-~~~~~~~~~~~~~----~~~i~D~~G~-~~~~~~~~~~~~~~~d~ 82 (211)
++-++++|.+|+ ||-+|+.+|....+.....+ -......++++++ .+++.=.+-. +.+..+ .+ ......+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn-~~-~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPN-AE-IAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCC-cc-cccceee
Confidence 467899999999 99999999998777444322 2234455666654 2333222211 222221 11 1223578
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
+++|||.+. .+.+.....|+...- +..- -.++.++||.|..++.
T Consensus 82 ~vmvfdlse-~s~l~alqdwl~htd----insf-dillcignkvdrvphh 125 (418)
T KOG4273|consen 82 FVMVFDLSE-KSGLDALQDWLPHTD----INSF-DILLCIGNKVDRVPHH 125 (418)
T ss_pred EEEEEeccc-hhhhHHHHhhccccc----cccc-hhheecccccccccch
Confidence 899999987 344767766665432 1111 2357789999987654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00089 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.184 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+ .++++|++|+|||||++.+.+-
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 5 8999999999999999999874
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00091 Score=46.16 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|++.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999864
|
... |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00091 Score=46.36 Aligned_cols=20 Identities=40% Similarity=0.444 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999986
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0009 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.|+++|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999874
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0012 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
.+.-.++++|++|+|||||++.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999999886
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00086 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.350 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-++++||+|||||||++.+.+
T Consensus 31 f~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999986
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.001 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+|+++|++||||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0013 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+.--|+++|++|||||||++.+.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35567999999999999999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00097 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+--++++||.|||||||++.+.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999986
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0013 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
--++|+||.|+|||||++.|++.-
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCcc
Confidence 347899999999999999999743
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0013 Score=48.52 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 366888999999999999999853
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0014 Score=49.65 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+..-|+++|++|||||||+++|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566888999999999999999754
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.001 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|++.|++|||||||.++|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999763
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0011 Score=50.70 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+++|++|+|||||+..+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999986
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00077 Score=54.99 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-+.+.+|+|.|++|||||||+++|+..
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcc
Confidence 345788999999999999999999864
|
|
| >KOG3347|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0011 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+.+++|++.|.||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 36678999999999999999999984
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0012 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.221 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999998743
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0014 Score=50.65 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-...+|++|+|++|||||+|+..++.
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999885
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0011 Score=50.07 Aligned_cols=22 Identities=41% Similarity=0.350 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
---+++||+|||||||+..|..
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHh
Confidence 3458999999999999998864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0013 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.-.++++|++|+|||||++.+.+-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999974
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0013 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|||||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998743
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0013 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.=.++++|+.|+|||||++.+.+-.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999998743
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0016 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+++++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999983
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0013 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.-.++++|+.|+|||||++.+.+-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0013 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999743
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.04 Score=36.98 Aligned_cols=98 Identities=16% Similarity=0.054 Sum_probs=54.8
Q ss_pred EcCCCCCHHHHHHHHHcCcccccccccceeeEEEEec---CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch
Q psy1914 17 SGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE---KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ 93 (211)
Q Consensus 17 ~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 93 (211)
=+..|+||||+...|...-.... +....-+..+ +..+.++|+|+..... ....+..+|.++++++.+..
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~---~~~~l~~aD~vlvvv~~~~~- 77 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEV---SLAALDQADRVFLVTQQDLP- 77 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHH---HHHHHHHcCeEEEEecCChH-
Confidence 35679999998887764222110 1111112111 1178999999875433 23456779999999987552
Q ss_pred hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy1914 94 KTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
+ +....+.+..+.+.. .. ....+.+|+|+
T Consensus 78 s-~~~~~~~~~~l~~~~-~~-~~~~~~lVvNr 106 (106)
T cd03111 78 S-IRNAKRLLELLRVLD-YS-LPAKIELVLNR 106 (106)
T ss_pred H-HHHHHHHHHHHHHcC-CC-CcCceEEEecC
Confidence 2 445555544443321 11 02457777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0014 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|+|||||++.+.+-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999874
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0015 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|||||||++.+.+-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999743
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0015 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|++|+|||||++.+.+-
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 211 | ||||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 1e-26 | ||
| 1nrj_B | 218 | Signal Recognition Particle Receptor Beta-Subunit I | 4e-09 | ||
| 2ged_A | 193 | Signal Recognition Particle Receptor Beta-subunit I | 1e-07 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 5e-05 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 5e-04 |
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
| >pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In Complex With The Srx Domain From The Alpha-Subunit Length = 218 | Back alignment and structure |
|
| >pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In Nucleotide-free Dimerized Form Length = 193 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 3e-59
Identities = 76/208 (36%), Positives = 123/208 (59%), Gaps = 6/208 (2%)
Query: 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY---EKKNIKIVDLP 63
RKSSQ+ VL GL SGKTLLF RL+ +Y ++ TS+ ++ + ++ ++DLP
Sbjct: 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLP 62
Query: 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCC 123
G + LR + D++KSSA+ +V+V+DS+ Q+ ++DVAE LY +L D + ++L+ C
Sbjct: 63 GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 122
Query: 124 NKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYN 183
NKQD +AKS+ +++ L+KELN +R T+S + + LG K+FEFS L
Sbjct: 123 NKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPL 182
Query: 184 QVSFCDT---TGLDSASEYDVEQLQDWM 208
+V F + G D++ L+ W+
Sbjct: 183 KVEFLECSAKGGRGDTGSADIQDLEKWL 210
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 2e-52
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 16/218 (7%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
+ K +KS Q ++++G SGKT L L + S + Y+ + +V
Sbjct: 3 HMGIK-QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLV 60
Query: 61 DLPGEDRLRNKFFDQYKSS---AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSR- 116
D PG +LR K D K+ KG+++++DS+ K L AE L IL+ +
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 117 VNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT------NDVAANQTFLG 170
++IL+ CNK + A+ S +K L+ E+ V + L + D A N +
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 180
Query: 171 NPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208
F+F++L V + S ++ + Q ++W+
Sbjct: 181 QSTDGFKFANLEASVVAFEG----SINKRKISQWREWI 214
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-41
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 4 FKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLP 63
S Q ++++G SGKT L L + S E + Y+ + +VD P
Sbjct: 41 SGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSAADYDGSGVTLVDFP 99
Query: 64 GEDRLRNKFFDQYKSS---AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSR-VNI 119
G +LR K D K+ KG+++++DS+ K L AE L IL+ + ++I
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159
Query: 120 LVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152
L+ CNK + A+ S +K L+ E+ V +
Sbjct: 160 LIACNKSELFTARPPSKIKDALESEIQKVIERR 192
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-14
Identities = 30/141 (21%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
++ F KV+++ GL +GKT + + ++ + ++ NV + D
Sbjct: 8 IWRLFNHQEHKVIIV-GLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWD 66
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G++ LR+ ++ Y ++ + ++ V+DS T ++ + E LY +LA ++ + +L+
Sbjct: 67 IGGQESLRS-SWNTYYTNTEFVIVVVDS-TDRERISVTREELYKMLAHEDLR--KAGLLI 122
Query: 122 CCNKQDQTLAKSSSVVKTLLQ 142
NKQD + + + L+
Sbjct: 123 FANKQDVKECMTVAEISQFLK 143
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-13
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTS--LKENVGNFTYEKKNIKIV 60
V+ L GL SGKT + +L S + ++ F + +
Sbjct: 14 LVPRGSKEVHVLCL-GLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVF 72
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+ G+ R RN ++ Y + I++V+DSS + + E L +L P ++ R+ IL
Sbjct: 73 DMSGQGRYRN-LWEHYYKEGQAIIFVIDSSDRLR-MVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 121 VCCNKQDQTLAKSSSVVKTLLQ 142
NK D A +S V LL
Sbjct: 131 FFANKMDLRDAVTSVKVSQLLC 152
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-13
Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDL 62
+++LL GL +GKT L +L + N+ + + + + D+
Sbjct: 9 LKSAPDQEVRILLL-GLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDI 67
Query: 63 PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122
G+ ++R ++ Y + ++YV+DS+ ++ + + L +L + ++ V +L+
Sbjct: 68 GGQRKIRP-YWRSYFENTDILIYVIDSADRKR-FEETGQELTELLEEEKLSC--VPVLIF 123
Query: 123 CNKQDQTLAKSSSVVKTLLQ 142
NKQD A +S + L
Sbjct: 124 ANKQDLLTAAPASEIAEGLN 143
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-13
Identities = 28/140 (20%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDL 62
KV+++ GL +GKT + + ++ + ++ NV + D+
Sbjct: 14 LVPRGSQEHKVIIV-GLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDI 72
Query: 63 PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122
G++ LR+ ++ Y ++ + ++ V+DS+ ++ + E LY +LA ++ + +L+
Sbjct: 73 GGQESLRS-SWNTYYTNTEFVIVVVDSTDRER-ISVTREELYKMLAHEDLR--KAGLLIF 128
Query: 123 CNKQDQTLAKSSSVVKTLLQ 142
NKQD + + + L+
Sbjct: 129 ANKQDVKECMTVAEISQFLK 148
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-12
Identities = 32/142 (22%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 2 LFFKFRKSSQKV-VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
+ K ++ +++ +L+ GL +GKT + + +L N+ + + I
Sbjct: 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIW 67
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
D+ G+ LR+ ++ Y S G+++V+DS+ Q+ ++D L +L + ++ +L
Sbjct: 68 DVGGQKSLRS-YWRNYFESTDGLIWVVDSADRQR-MQDCQRELQSLLVEERLAG--ATLL 123
Query: 121 VCCNKQDQTLAKSSSVVKTLLQ 142
+ NKQD A S + ++ L+
Sbjct: 124 IFANKQDLPGALSCNAIQEALE 145
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-12
Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 2 LFFKFRKSSQKV-VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
+F K S++++ +L+ GL +GKT + RL + + ++ NV +Y+ + +
Sbjct: 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVW 67
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
DL G+ +R ++ Y + +++V+DS+ + + ++ L+++L + ++Q +L
Sbjct: 68 DLGGQTSIRP-YWRCYYADTAAVIFVVDSTDKDR-MSTASKELHLMLQEEELQD--AALL 123
Query: 121 VCCNKQDQTLAKSSSVVKTLLQ 142
V NKQDQ A S+S V L
Sbjct: 124 VFANKQDQPGALSASEVSKELN 145
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-12
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
LF + Q +L+ GL +GKT + +L + + ++ NV Y+ + D
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+D++R + Y + +G+++V+DS ++ +++ A+ L +L + +++ +LV
Sbjct: 80 VGGQDKIRP-LWRHYFQNTQGLIFVVDS-NDRERVQESADELQKMLQEDELRD--AVLLV 135
Query: 122 CCNKQDQTLAKSSSVVKTLLQ 142
NKQD A S + L
Sbjct: 136 FANKQDMPNAMPVSELTDKLG 156
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-11
Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + +L + + ++ NV Y+ + + D+ G+D++R +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LW 61
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y + +G+++V+DS ++ + + E L +LA+ +++ +LV NKQD A +
Sbjct: 62 RHYFQNTQGLIFVVDS-NDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNAMN 118
Query: 134 SSVVKTLLQ 142
++ + L
Sbjct: 119 AAEITDKLG 127
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-11
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTS--LKENVGNFTYEKKNIKI 59
L + K ++ L+ GL SGKT + ++ E + N+ T IK+
Sbjct: 14 LVPRGSKEEMELTLV-GLQYSGKTTFVNVIASGQFNED-MIPTVGFNMRKITKGNVTIKL 71
Query: 60 VDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119
D+ G+ R R+ +++Y IVY++D++ +K + L+ +L PQ+Q + +
Sbjct: 72 WDIGGQPRFRS-MWERYCRGVSAIVYMVDAADQEK-IEASKNELHNLLDKPQLQG--IPV 127
Query: 120 LVCCNKQDQTLAKSSSVVKTLLQ 142
LV NK+D A + +
Sbjct: 128 LVLGNKRDLPGALDEKELIEKMN 150
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 3e-11
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGE 65
++++L GL +GKT + RL + + ++ NV TY+ ++ DL G
Sbjct: 3 HMTREMRILIL-GLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61
Query: 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125
+R ++ Y S+ ++YV+DS + + L +L + +++ ++V NK
Sbjct: 62 TSIRP-YWRCYYSNTDAVIYVVDSCDRDR-IGISKSELVAMLEEEELRK--AILVVFANK 117
Query: 126 QDQTLAKSSSVVKTLLQ 142
QD A +SS + L
Sbjct: 118 QDMEQAMTSSEMANSLG 134
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 4e-11
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
F K + K+V L GL +GKT L L + + +L T
Sbjct: 16 LQFLGLYKKTGKLVFL-GLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 74
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
DL G + R + Y + GIV+++D + ++ L + E L ++ D + + V IL
Sbjct: 75 DLGGHIQARR-VWKNYLPAINGIVFLVDCADHER-LLESKEELDSLMTDETIAN--VPIL 130
Query: 121 VCCNKQDQTLAKSSSVVKTLL 141
+ NK D+ A S ++ +
Sbjct: 131 ILGNKIDRPEAISEERLREMF 151
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 4e-11
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
L +V++L GL +GKT + RL + ++ N+ Y+ + ++
Sbjct: 13 TLGLLPADRKIRVLML-GLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVW 71
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
DL G+ +R ++ Y S ++YV+DS+ + + LY +L + +++ +L
Sbjct: 72 DLGGQTGVRP-YWRCYFSDTDAVIYVVDSTDRDR-MGVAKHELYALLDEDELRK--SLLL 127
Query: 121 VCCNKQDQTLAKSSSVVKTLLQ 142
+ NKQD A S + + L
Sbjct: 128 IFANKQDLPDAASEAEIAEQLG 149
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-10
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 5/142 (3%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
K++ L GL +GKT L L + +
Sbjct: 14 LASLGLWNKHGKLLFL-GLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTF 72
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
DL G + R + Y GIV+++D++ ++ + L + +++ V +
Sbjct: 73 DLGGHIQARR-LWKDYFPEVNGIVFLVDAADPER-FDEARVELDALFNIAELKD--VPFV 128
Query: 121 VCCNKQDQTLAKSSSVVKTLLQ 142
+ NK D A S + +++ L
Sbjct: 129 ILGNKIDAPNAVSEAELRSALG 150
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 3e-10
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 23/161 (14%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKE--------------- 45
+ F R+ + K+V G LSGKT + +
Sbjct: 5 TINFANREINFKIVYY-GPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLP 63
Query: 46 -NVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLY 104
++G K + +PG+ GIV+V DS+ + LR AES+
Sbjct: 64 LDIGEVKGFKTRFHLYTVPGQVFYN-ASRKLILRGVDGIVFVADSAPNR--LRANAESMR 120
Query: 105 VILADPQVQSSRVN---ILVCCNKQDQTLAKSSSVVKTLLQ 142
+ + ++ I++ NK+D A +V+ ++
Sbjct: 121 NMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD 161
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-09
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 46 NVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYV 105
NV Y+ + + D+ G+D++R + Y + +G+++V+DS ++ + + E L
Sbjct: 200 NVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDS-NDRERVNEAREELMR 257
Query: 106 ILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQ 142
+LA+ +++ +LV NKQD A +++ + L
Sbjct: 258 MLAEDELRD--AVLLVFANKQDLPNAMNAAEITDKLG 292
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 3e-08
Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 5 KFRKSSQKVVLLSGLSLSGKT----LLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKI 59
F+ S +++L+ GL SGK+ ++F ++ ++ ++ K + + N +I
Sbjct: 15 YFQGSKPRILLM-GLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQI 73
Query: 60 VDLPGEDRLRNKFFD--QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRV 117
D PG+ + FD ++YV+D+ Q + L++ ++ + +
Sbjct: 74 WDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA---QDDYMEALTRLHITVSKAYKVNPDM 130
Query: 118 NILVCCNKQD 127
N V +K D
Sbjct: 131 NFEVFIHKVD 140
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-06
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEK----KNIKIVDLPGEDRL 68
+VLL G+ GK+ + ++V+ T E+ N + E ++ +++LPG+
Sbjct: 1 MVLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNY 59
Query: 69 RNKFFD--QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
+D + S +VYV+D Q + +L +I+ + +NI V +K
Sbjct: 60 FEPSYDSERLFKSVGALVYVID---SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKV 116
Query: 127 D 127
D
Sbjct: 117 D 117
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-05
Identities = 38/262 (14%), Positives = 75/262 (28%), Gaps = 81/262 (30%)
Query: 24 KTLLFAR-------LVYSKYFESCTSLKENVGNFTYEKK--------NIKIVDLPGE--- 65
K LL R L + SL + T ++ + + DLP E
Sbjct: 267 KILLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 66 --------------------DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVA----- 100
D ++ D+ + + + VL+ + +K ++
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 101 ----ESLYVIL---ADPQVQSSRVNILV---CCNKQDQTLAKS------SSVVKTLLQKE 144
L ++ VN L KQ + S VK +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 145 LN--LVRRTKSNQLEDTNDVAANQ------TFLG-------NPDKDFEFSDLYNQVSF-- 187
L+ +V + D++D+ + +G +P++ F ++ F
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 188 ---CDTTGLDSASEYDVEQLQD 206
+ +AS + LQ
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQ 526
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 5e-04
Identities = 30/197 (15%), Positives = 72/197 (36%), Gaps = 38/197 (19%)
Query: 2 LFFKFRKSSQKV-----VLLSGLSLSGKTLLFARLVYSKYFESCTSLK---ENVGNFTYE 53
+ K R++ ++ VL+ G+ SGKT + + S + K N+ N
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV-YVLDSSTVQKTLRDV------AESLYVI 106
+ ++++ +L + + S + L ++Q LR + L ++
Sbjct: 196 ETVLEML-----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LV 249
Query: 107 LADPQVQSSRV--------NILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158
L + VQ+++ IL+ + + + S T ++L + + ++
Sbjct: 250 LLN--VQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAATT---THISLDHHSMTLTPDE 302
Query: 159 TNDVAANQTFLGNPDKD 175
+ +L +D
Sbjct: 303 VKSLLLK--YLDCRPQD 317
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-05
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 11/123 (8%)
Query: 14 VLLSGLSLSGKT----LLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGEDRL 68
+LL G S SGK+ ++F+ ++ + + + + D G+D
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65
Query: 69 RNKFFDQYK----SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCN 124
+F + K + +++V D + E L + S I V +
Sbjct: 66 MENYFTKQKDHIFQMVQVLIHVFDVE--STEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123
Query: 125 KQD 127
K D
Sbjct: 124 KMD 126
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 211 | |||
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.98 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.98 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.97 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.97 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.97 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.97 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.97 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.97 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.97 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.97 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.97 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.97 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.97 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.97 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.97 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.97 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.97 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.96 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.96 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.96 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.96 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.96 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.96 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.96 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.96 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.96 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.96 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.96 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.96 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.96 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.96 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.96 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.96 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.96 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.96 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.96 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.96 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.96 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.96 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.96 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.96 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.96 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.96 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.96 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.96 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.96 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.96 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.96 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.96 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.96 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.96 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.96 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.96 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.96 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.96 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.96 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.96 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.96 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.96 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.96 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.96 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.96 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.96 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.96 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.96 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.96 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.96 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.96 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.95 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.95 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.95 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.95 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.95 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.95 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.95 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.95 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.95 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.95 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.95 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.95 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.95 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.95 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.95 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.95 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.95 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.95 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.95 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.95 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.95 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.95 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.95 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.95 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.95 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.94 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.94 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.94 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.94 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.94 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.94 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.93 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.93 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.88 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.93 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.93 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.93 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.93 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.92 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.92 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.92 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.92 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.92 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.92 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.92 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.92 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.91 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.91 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.9 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.9 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.9 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.9 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.89 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.89 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.89 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.88 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.88 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.88 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.88 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.88 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.88 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.88 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.87 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.87 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.87 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.87 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.87 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.87 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.87 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.86 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.86 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.86 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.86 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.86 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.86 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.86 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.85 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.85 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.85 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.85 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.85 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.84 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.84 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.84 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.84 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.84 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.84 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.84 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.84 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.83 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.83 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.83 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.83 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.82 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.82 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.81 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.81 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.8 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.8 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.79 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.79 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.78 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.77 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.76 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.76 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.75 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.75 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.74 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.73 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.72 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.71 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.71 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.7 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.69 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.69 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.69 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.67 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.66 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.66 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.65 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.63 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.63 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.62 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.61 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.59 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.59 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.58 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.57 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.57 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.56 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.56 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.52 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.51 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.45 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.41 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.32 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.15 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.14 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.11 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.05 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.04 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.88 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.88 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.81 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.79 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.78 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.65 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.63 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.47 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.41 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.35 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.33 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.27 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.16 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.07 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.0 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.8 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.74 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.67 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.67 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.66 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.65 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.54 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.48 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.46 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.44 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.35 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.35 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.33 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.28 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.21 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.19 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.18 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.16 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.14 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.14 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.13 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.11 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.09 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.08 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.05 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.04 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.03 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.01 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.01 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.96 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 96.94 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.93 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.93 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 96.92 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.91 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.89 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 96.86 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.86 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.86 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 96.86 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.86 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.86 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 96.85 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.85 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 96.85 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 96.84 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.83 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.83 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.82 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 96.82 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 96.82 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 96.82 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 96.81 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.81 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 96.8 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.79 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 96.78 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 96.78 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 96.78 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.77 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 96.77 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 96.77 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.76 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.76 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.76 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.76 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 96.76 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.75 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.74 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.74 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 96.74 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.74 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.74 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.73 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.73 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.73 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.72 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 96.71 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.69 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.68 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.67 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.67 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.67 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.67 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.67 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 96.67 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.67 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.67 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 96.66 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.66 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.66 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.65 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.65 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.64 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.64 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.63 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.62 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.62 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.61 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.6 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.59 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.57 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.57 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.57 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.57 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.56 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.56 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.55 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.54 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.53 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.53 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.52 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.52 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.52 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.51 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.51 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.51 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.5 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.49 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.49 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.47 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.47 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.47 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.47 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.47 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.46 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.46 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.46 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.45 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.42 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.42 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.42 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.39 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.38 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.38 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.37 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.37 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.36 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.35 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.34 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.34 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.34 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.32 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.31 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.31 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.29 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.29 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.28 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.28 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.27 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.27 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.27 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 96.27 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.25 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.25 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.24 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.23 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.22 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.22 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.21 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.2 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.18 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.17 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.17 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.17 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.15 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.12 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.12 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.11 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.11 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.09 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.09 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.07 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.06 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.03 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.01 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.01 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.97 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.96 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.96 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.94 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 95.93 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.91 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 95.91 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.9 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.9 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 95.88 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.88 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.88 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.84 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.84 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.84 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 95.83 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.82 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.82 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.8 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.79 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.78 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.77 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 95.76 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.72 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.7 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.69 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 95.66 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.66 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.63 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.63 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.63 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.61 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.6 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.59 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.58 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 95.56 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.53 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.52 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.52 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.51 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.49 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 95.49 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.45 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.41 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.41 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.39 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.38 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.38 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 95.38 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.37 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.36 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.36 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 95.35 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.34 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 95.32 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.32 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.25 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 95.24 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 95.22 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.19 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.18 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.17 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.17 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.16 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.14 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.13 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.12 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.11 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.07 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.03 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 95.03 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.02 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 94.99 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.98 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 94.95 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.94 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 94.93 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 94.93 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 94.92 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.89 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.89 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.86 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.86 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.86 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 94.81 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.81 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 94.77 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 94.77 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.76 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 94.76 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 94.75 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.67 |
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=221.14 Aligned_cols=201 Identities=37% Similarity=0.648 Sum_probs=154.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecC---ceEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEK---KNIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
++.+.+||+++|++|||||||+++|+++.+...+++++.....+.+++ ..+.+|||||++.+...++..+++++|++
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 356789999999999999999999999999888888877777788874 48999999999998875678889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|+++....+.....+|..++........++|+++|+||+|+..........+.+.+.+...+..+.++....+...
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 99999988655566777777776543222334589999999999998888888888898888888888888877766665
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecC------CCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDS------ASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg------~g~~~i~~l~~~i~~ 210 (211)
....+++..++.|.+++++..+.|++|||++| +| ++++++||.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~g---v~~lf~~l~~ 212 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSAD---IQDLEKWLAK 212 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCB---CHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccC---hHHHHHHHHH
Confidence 55567777778888888877899999999999 99 9999999975
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=208.12 Aligned_cols=157 Identities=22% Similarity=0.298 Sum_probs=119.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
+.+++||+++|.+|||||||+++|+.+.|...+ ||++..... +..++. .+.+|||+|+++|+. ++..|++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~-l~~~~~~~a~~ 88 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS-LIPSYIRDSAA 88 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG-GHHHHHTTCSE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh-HHHHHhccccE
Confidence 346789999999999999999999999997776 777765443 455555 788999999999999 79999999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|.+++.+ +..+..|+..+.... ..++|++||+||+|+.+.+.+. +....+.+.++
T Consensus 89 ~ilv~di~~~~S-f~~i~~~~~~i~~~~---~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~--------------- 149 (216)
T 4dkx_A 89 AVVVYDITNVNS-FQQTTKWIDDVRTER---GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN--------------- 149 (216)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHH---TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------------
T ss_pred EEEEeecchhHH-HHHHHHHHHHHHHhc---CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC---------------
Confidence 999999999665 999999988876532 2459999999999998765532 22333443333
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.|++|||++|+| |+++|++|.+
T Consensus 150 -----------------------~~~~e~SAktg~n---V~e~F~~i~~ 172 (216)
T 4dkx_A 150 -----------------------VMFIETSAKAGYN---VKQLFRRVAA 172 (216)
T ss_dssp -----------------------CEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CeeEEEeCCCCcC---HHHHHHHHHH
Confidence 6899999999999 9999999864
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=197.57 Aligned_cols=161 Identities=21% Similarity=0.355 Sum_probs=129.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+.+||+++|++|||||||+++|.++.+....||.+.....+.+++..+.+|||||++.++. .+..+++++|++++|+|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP-YWRSYFENTDILIYVID 92 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHH-HHHHHHTTCSEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHH-HHHHHhCCCCEEEEEEE
Confidence 57899999999999999999999998776666888888778888888999999999999988 68889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++......+ +|+++|+||+|+.+.....++.+. +.. ...
T Consensus 93 ~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~----~~~-~~~----------------- 147 (181)
T 1fzq_A 93 SADRKR-FEETGQELTELLEEEKLSC--VPVLIFANKQDLLTAAPASEIAEG----LNL-HTI----------------- 147 (181)
T ss_dssp TTCGGG-HHHHHHHHHHHTTCGGGTT--CCEEEEEECTTSTTCCCHHHHHHH----TTG-GGC-----------------
T ss_pred CcCHHH-HHHHHHHHHHHHhChhhcC--CCEEEEEECcCcccCCCHHHHHHH----hCc-hhc-----------------
Confidence 999665 8888888888876533333 999999999999876654332222 110 000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 148 ------------~~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 174 (181)
T 1fzq_A 148 ------------RDRVWQIQSCSALTGEG---VQDGMNWVCK 174 (181)
T ss_dssp ------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------cCCceEEEEccCCCCCC---HHHHHHHHHH
Confidence 01237899999999999 9999999975
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-31 Score=193.17 Aligned_cols=162 Identities=22% Similarity=0.365 Sum_probs=131.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++.+||+++|++|||||||+++|.++.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP-YWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGG-GGGGGCTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhH-HHHHHhccCCEEEEEE
Confidence 356799999999999999999999998887777888888888888888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||+|+.+.....++.+.+.. . ..
T Consensus 83 d~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~--~---~~---------------- 138 (171)
T 1upt_A 83 DSCDRDR-IGISKSELVAMLEEEELRK--AILVVFANKQDMEQAMTSSEMANSLGL--P---AL---------------- 138 (171)
T ss_dssp ETTCCTT-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHHTG--G---GC----------------
T ss_pred ECCCHHH-HHHHHHHHHHHHhchhhCC--CEEEEEEECCCCcCCCCHHHHHHHhCc--h---hc----------------
Confidence 9999765 8888888888876543334 999999999999877654443332210 0 00
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 139 -------------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 165 (171)
T 1upt_A 139 -------------KDRKWQIFKTSATKGTG---LDEAMEWLVE 165 (171)
T ss_dssp -------------TTSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------cCCceEEEECcCCCCcC---HHHHHHHHHH
Confidence 01236899999999999 9999999875
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-31 Score=192.29 Aligned_cols=158 Identities=23% Similarity=0.415 Sum_probs=126.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+||+++|++|||||||+++++++.+....||++.....+.+++..+.+|||||++.++. ++..+++++|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHH-HHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHH-HHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999988887777888877777888888999999999999988 78889999999999999999
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
+.+ +.....++..++......+ +|+++|+||+|+.+.....++.+. +.. .. +
T Consensus 80 ~~s-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~----~~~-~~------------------~-- 131 (164)
T 1r8s_A 80 RER-VNEAREELMRMLAEDELRD--AVLLVFANKQDLPNAMNAAEITDK----LGL-HS------------------L-- 131 (164)
T ss_dssp GGG-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHH----TTG-GG------------------C--
T ss_pred HHH-HHHHHHHHHHHHhchhhcC--CeEEEEEECcCCcCCCCHHHHHHH----hCc-cc------------------c--
Confidence 765 8888888888876543334 999999999999766543332221 110 00 0
Q ss_pred CCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| +++++++|.+
T Consensus 132 ---------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 158 (164)
T 1r8s_A 132 ---------RHRNWYIQATCATSGDG---LYEGLDWLSN 158 (164)
T ss_dssp ---------SSCCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred ---------cCccEEEEEcccCCCcC---HHHHHHHHHH
Confidence 01236899999999999 9999999864
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=195.64 Aligned_cols=162 Identities=20% Similarity=0.372 Sum_probs=127.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++.+||+++|++|||||||+++|+++.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii~v~ 91 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-SWNTYYTNTEFVIVVV 91 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CG-GGHHHHTTCCEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHH-HHHHHhcCCCEEEEEE
Confidence 467899999999999999999999988887666888888888888888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....|+..++......+ +|+++|+||+|+.+.....++.+.+.. . .. .
T Consensus 92 d~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~~~~--~---~~-----~---------- 148 (187)
T 1zj6_A 92 DSTDRER-ISVTREELYKMLAHEDLRK--AGLLIFANKQDVKECMTVAEISQFLKL--T---SI-----K---------- 148 (187)
T ss_dssp ETTCTTT-HHHHHHHHHHHHTSGGGTT--CEEEEEEECTTSTTCCCHHHHHHHHTG--G---GC-----C----------
T ss_pred eCCCHHH-HHHHHHHHHHHHhchhhCC--CeEEEEEECCCCcCCCCHHHHHHHhCh--h---hh-----c----------
Confidence 9999665 8888888888876532233 999999999999875554443332210 0 00 0
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| ++++++||.+
T Consensus 149 --------------~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 174 (187)
T 1zj6_A 149 --------------DHQWHIQACCALTGEG---LCQGLEWMMS 174 (187)
T ss_dssp --------------SSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred --------------CCCcEEEEccCCCCcC---HHHHHHHHHH
Confidence 1237899999999999 9999999875
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=196.97 Aligned_cols=162 Identities=22% Similarity=0.384 Sum_probs=125.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++.+||+++|++|||||||+++|+++.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVV 104 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CT-THHHHHHTCCEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHH-HHHHHhccCCEEEEEE
Confidence 457899999999999999999999998887777888887777888888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||+|+.+.....++.+. +.. ...
T Consensus 105 D~~~~~s-~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~----~~~-~~~---------------- 160 (192)
T 2b6h_A 105 DSNDRER-VQESADELQKMLQEDELRD--AVLLVFANKQDMPNAMPVSELTDK----LGL-QHL---------------- 160 (192)
T ss_dssp ETTCGGG-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHH----TTG-GGC----------------
T ss_pred ECCCHHH-HHHHHHHHHHHhcccccCC--CeEEEEEECCCCCCCCCHHHHHHH----hCc-ccc----------------
Confidence 9999765 8888888888876543334 999999999999776544332222 110 000
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 161 -------------~~~~~~~~~~SA~~g~g---i~~l~~~l~~ 187 (192)
T 2b6h_A 161 -------------RSRTWYVQATCATQGTG---LYDGLDWLSH 187 (192)
T ss_dssp -------------SSCCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred -------------cCCceEEEECcCCCcCC---HHHHHHHHHH
Confidence 01237889999999999 9999999864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=197.85 Aligned_cols=173 Identities=20% Similarity=0.294 Sum_probs=123.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
..+.+||+++|++|||||||+++|.++.+....||.+.....+.+++..+.+|||||++.++. ++..+++++|++++|+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARR-VWKNYLPAINGIVFLV 100 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CC-GGGGGGGGCSEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHH-HHHHHHhcCCEEEEEE
Confidence 356789999999999999999999998876666888888888889888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....|+..++......+ +|+++|+||+|+.+....++..+. +.... ..++....
T Consensus 101 D~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~----~~~~~--~~~~~~~~-------- 163 (198)
T 1f6b_A 101 DCADHER-LLESKEELDSLMTDETIAN--VPILILGNKIDRPEAISEERLREM----FGLYG--QTTGKGSV-------- 163 (198)
T ss_dssp ETTCGGG-HHHHHHHHHHHHTCGGGTT--SCEEEEEECTTSTTCCCHHHHHHH----HTCTT--TCCCSSCC--------
T ss_pred ECCCHHH-HHHHHHHHHHHHhCcccCC--CcEEEEEECCCccccCCHHHHHHH----hCccc--cccccccc--------
Confidence 9999665 8888889888876533333 999999999999865444433322 22110 00000000
Q ss_pred ccCCCCCCeeecC-CCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSD-LYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~-~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+ ....+++++|||++|+| ++++++||.+
T Consensus 164 ---------~~~~~~~~~~~~~~~SA~~g~g---v~~l~~~l~~ 195 (198)
T 1f6b_A 164 ---------SLKELNARPLEVFMCSVLKRQG---YGEGFRWMAQ 195 (198)
T ss_dssp ---------CTTTCCSCCEEEEECBTTTTBS---HHHHHHHHHT
T ss_pred ---------ccccccCceEEEEEEECCCCCC---HHHHHHHHHH
Confidence 0000 02347899999999999 9999999975
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=194.46 Aligned_cols=169 Identities=17% Similarity=0.264 Sum_probs=128.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
..+.+||+++|++|||||||++++.++.+....||.+.....+.+++..+.+|||||++.++. .+..+++++|++++|+
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR-LWKDYFPEVNGIVFLV 98 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTT-SGGGGCTTCCEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHH-HHHHHHhcCCEEEEEE
Confidence 356789999999999999999999998887766888888888899988999999999999988 6888899999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||+|+.+....++..+ .+.... ... .
T Consensus 99 d~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~----~~~~~~---~~~---------~-- 157 (190)
T 1m2o_B 99 DAADPER-FDEARVELDALFNIAELKD--VPFVILGNKIDAPNAVSEAELRS----ALGLLN---TTG---------S-- 157 (190)
T ss_dssp ETTCGGG-HHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTCCCHHHHHH----HTTCSS---CCC------------
T ss_pred ECCChHH-HHHHHHHHHHHHcchhhcC--CCEEEEEECCCCcCCCCHHHHHH----HhCCcc---ccc---------c--
Confidence 9999665 8888888888876533333 99999999999987444433222 221100 000 0
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ . + .-...+++++|||++|+| ++++++||.+
T Consensus 158 -----~-~--~-~~~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 188 (190)
T 1m2o_B 158 -----Q-R--I-EGQRPVEVFMCSVVMRNG---YLEAFQWLSQ 188 (190)
T ss_dssp ----------C-CSSCCEEEEECBTTTTBS---HHHHHHHHHT
T ss_pred -----c-c--c-cccceEEEEEeECCcCCC---HHHHHHHHHh
Confidence 0 0 0 012347899999999999 9999999975
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=193.29 Aligned_cols=161 Identities=21% Similarity=0.360 Sum_probs=129.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
++.+||+++|++|||||||+++++++......||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d 94 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS-YWRNYFESTDGLIWVVD 94 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHT-TGGGGCTTCSEEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHH-HHHHHhcCCCEEEEEEE
Confidence 57899999999999999999999988855555888888888888888999999999999988 68888999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++......+ +|+++|+||+|+.+.....+..+.+ .. ...
T Consensus 95 ~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~----~~-~~~----------------- 149 (186)
T 1ksh_A 95 SADRQR-MQDCQRELQSLLVEERLAG--ATLLIFANKQDLPGALSCNAIQEAL----EL-DSI----------------- 149 (186)
T ss_dssp TTCGGG-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHT----TG-GGC-----------------
T ss_pred CcCHHH-HHHHHHHHHHHHhChhcCC--CcEEEEEeCccCCCCCCHHHHHHHh----Ch-hhc-----------------
Confidence 999765 8888888888876533334 9999999999998765543332221 10 000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| +++++++|.+
T Consensus 150 ------------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 176 (186)
T 1ksh_A 150 ------------RSHHWRIQGCSAVTGED---LLPGIDWLLD 176 (186)
T ss_dssp ------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------cCCceEEEEeeCCCCCC---HHHHHHHHHH
Confidence 01237899999999999 9999999875
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=192.48 Aligned_cols=162 Identities=22% Similarity=0.375 Sum_probs=128.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.++.+||+++|++|||||||+++|+++.+.. ..||++.....+..++..+.+|||||++.+.. .+..+++++|++++|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS-MWERYCRGVSAIVYM 97 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHT-THHHHHTTCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHH-HHHHHHccCCEEEEE
Confidence 3557899999999999999999999988764 44788888777877777999999999999988 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....++..++......+ +|+++|+||+|+.......++.+. +... ..
T Consensus 98 ~D~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~----~~~~-~~--------------- 154 (188)
T 1zd9_A 98 VDAADQEK-IEASKNELHNLLDKPQLQG--IPVLVLGNKRDLPGALDEKELIEK----MNLS-AI--------------- 154 (188)
T ss_dssp EETTCGGG-HHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTCCCHHHHHHH----TTGG-GC---------------
T ss_pred EECCCHHH-HHHHHHHHHHHHhCcccCC--CCEEEEEECCCCccCCCHHHHHHH----hChh-hh---------------
Confidence 99998655 8888888888876533333 999999999999876543322221 1100 00
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+.+++|||++|+| ++++++||.+
T Consensus 155 --------------~~~~~~~~~~SA~~g~g---v~~l~~~l~~ 181 (188)
T 1zd9_A 155 --------------QDREICCYSISCKEKDN---IDITLQWLIQ 181 (188)
T ss_dssp --------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------ccCCeeEEEEECCCCCC---HHHHHHHHHH
Confidence 01237889999999999 9999999975
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=197.61 Aligned_cols=161 Identities=22% Similarity=0.393 Sum_probs=130.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
++++||+++|++|||||||++++..+.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d 98 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRP-YWRCYFSDTDAVIYVVD 98 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCC-CCSSSSTTCCEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHH-HHHHHhhcCCEEEEEEe
Confidence 57899999999999999999999988887777888888888888888999999999998887 67888899999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++......+ +|+++|+||+|+.+.....++.+.+.. . ..
T Consensus 99 ~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~--~---~~----------------- 153 (189)
T 2x77_A 99 STDRDR-MGVAKHELYALLDEDELRK--SLLLIFANKQDLPDAASEAEIAEQLGV--S---SI----------------- 153 (189)
T ss_dssp TTCCTT-HHHHHHHHHHHHTCSTTTT--CEEEEEEECTTSTTCCCHHHHHHHTTG--G---GC-----------------
T ss_pred CCCHHH-HHHHHHHHHHHHhhhhcCC--CeEEEEEECCCCcCCCCHHHHHHHhCh--h---hc-----------------
Confidence 999765 8888888888876543333 999999999999876554333222110 0 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 154 ------------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 180 (189)
T 2x77_A 154 ------------MNRTWTIVKSSSKTGDG---LVEGMDWLVE 180 (189)
T ss_dssp ------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------cCCceEEEEccCCCccC---HHHHHHHHHH
Confidence 01236899999999999 9999999875
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=193.06 Aligned_cols=162 Identities=21% Similarity=0.379 Sum_probs=128.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
..+.+||+++|.+|||||||+++|+++.+....+|.+.....+.+++..+.+|||||++.+.. .+..+++++|++++|+
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-SWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTC-GGGGGGTTCCEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHH-HHHHHhccCCEEEEEE
Confidence 346789999999999999999999999886666888888888888888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||+|+.......++.+.+. +. ..
T Consensus 97 D~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~~~--~~---~~---------------- 152 (181)
T 2h17_A 97 DSTDRER-ISVTREELYKMLAHEDLRK--AGLLIFANKQDVKECMTVAEISQFLK--LT---SI---------------- 152 (181)
T ss_dssp ETTCTTT-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHTT--GG---GC----------------
T ss_pred ECCCHHH-HHHHHHHHHHHHhChhhCC--CeEEEEEECCCcccCCCHHHHHHHhC--cc---cc----------------
Confidence 9998655 8888888888876532333 99999999999987654443332211 00 00
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+.+++|||++|+| ++++++||.+
T Consensus 153 -------------~~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 179 (181)
T 2h17_A 153 -------------KDHQWHIQACCALTGEG---LCQGLEWMMS 179 (181)
T ss_dssp -------------CSSCEEEEECBTTTTBT---HHHHHHHHHT
T ss_pred -------------cCCceEEEEccCCCCcC---HHHHHHHHHh
Confidence 01237899999999999 9999999975
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=193.21 Aligned_cols=165 Identities=21% Similarity=0.357 Sum_probs=128.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc--ccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES--CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.....||+++|.+|||||||+++|+++.+... .+|++.....+...+..+.+|||||++.+.. ++..+++++|++|+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRG-LWETYYDNIDAVIF 92 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGG-GGGGGCTTCSEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHH-HHHHHHhcCCEEEE
Confidence 35678999999999999999999999988763 5888888877887777999999999999988 68889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcC-----CCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQ-----SSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
|+|++++.+ +.....|+..++...... ..++|+++|+||+|+.......++.+.+.... ...
T Consensus 93 v~D~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~-------- 159 (199)
T 4bas_A 93 VVDSSDHLR-LCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT----LMG-------- 159 (199)
T ss_dssp EEETTCGGG-HHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH----HHT--------
T ss_pred EEECCcHHH-HHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh----hcc--------
Confidence 999999665 888888988887652221 01489999999999987766555444332100 000
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| +++++++|.+
T Consensus 160 ---------------------~~~~~~~~~Sa~~g~g---v~~l~~~l~~ 185 (199)
T 4bas_A 160 ---------------------DHPFVIFASNGLKGTG---VHEGFSWLQE 185 (199)
T ss_dssp ---------------------TSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred ---------------------CCeeEEEEeeCCCccC---HHHHHHHHHH
Confidence 1237899999999999 9999999875
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=191.08 Aligned_cols=163 Identities=26% Similarity=0.419 Sum_probs=127.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-cc-ccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK-YF-ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+.+||+++|.+|||||||+++|+++. +. ...+|++.....+.+++..+.+|||||++.+.. .+..+++++|++++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN-LWEHYYKEGQAIIFV 97 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGG-GGGGGGGGCSEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHH-HHHHHHhcCCEEEEE
Confidence 467899999999999999999999887 33 344788888788888888999999999999988 688889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....++..++........++|+++|+||+|+.+.....+..+.+. +. .. .
T Consensus 98 ~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~---~~-----~--------- 157 (190)
T 2h57_A 98 IDSSDRLR-MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC--LE---NI-----K--------- 157 (190)
T ss_dssp EETTCHHH-HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT--GG---GC-----C---------
T ss_pred EECCCHHH-HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC--hh---hc-----c---------
Confidence 99998654 88888888888765433113499999999999987655444333221 00 00 0
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| ++++++||.+
T Consensus 158 ---------------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 183 (190)
T 2h57_A 158 ---------------DKPWHICASDAIKGEG---LQEGVDWLQD 183 (190)
T ss_dssp ---------------SSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred ---------------CCceEEEEccCCCCcC---HHHHHHHHHH
Confidence 1237899999999999 9999999875
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=191.84 Aligned_cols=161 Identities=24% Similarity=0.430 Sum_probs=125.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
++.+||+++|++|||||||++++.++.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d 94 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP-YWRCYYADTAAVIFVVD 94 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCT-TGGGTTTTEEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHH-HHHHHhccCCEEEEEEE
Confidence 57899999999999999999999988886666888888888888888999999999999887 68888999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++...... ++|+++|+||+|+.+.....++.+.+ .. ...
T Consensus 95 ~~~~~s-~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~i~~~~----~~---------~~~--------- 149 (183)
T 1moz_A 95 STDKDR-MSTASKELHLMLQEEELQ--DAALLVFANKQDQPGALSASEVSKEL----NL---------VEL--------- 149 (183)
T ss_dssp TTCTTT-HHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTCCCHHHHHHHT----TT---------TTC---------
T ss_pred CCCHHH-HHHHHHHHHHHHcChhhC--CCeEEEEEECCCCCCCCCHHHHHHHh----Cc---------ccc---------
Confidence 998655 888888888887653233 49999999999998765444332221 10 000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 150 ------------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 176 (183)
T 1moz_A 150 ------------KDRSWSIVASSAIKGEG---ITEGLDWLID 176 (183)
T ss_dssp ------------CSSCEEEEEEBGGGTBT---HHHHHHHHHH
T ss_pred ------------cCCceEEEEccCCCCcC---HHHHHHHHHH
Confidence 01237899999999999 9999999875
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=183.08 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=100.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.+||+++|++|||||||+++|.+.......++.+.... .+.+++. .+.+|||||++.+.. ++..+++.+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW-LPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchh-hhhhhhhhCCEEEEEE
Confidence 58999999999999999999998776555555544433 3555555 788999999999988 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+.... ....+....
T Consensus 81 d~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------------------- 136 (166)
T 3q72_A 81 SVTDKGS-FEKASELRVQLRRARQT--DDVPIILVGNKSDLVRSREVSVDEGRACAVVF--------------------- 136 (166)
T ss_dssp ETTCHHH-HHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT---------------------
T ss_pred ECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEeccccccccccCHHHHHHHHHHh---------------------
Confidence 9999665 88888888888765333 3499999999999986654322 222222211
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|+| +++++++|.+
T Consensus 137 -----------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 160 (166)
T 3q72_A 137 -----------------DCKFIETSAALHHN---VQALFEGVVR 160 (166)
T ss_dssp -----------------TCEEEECBGGGTBS---HHHHHHHHHH
T ss_pred -----------------CCcEEEeccCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999875
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=185.54 Aligned_cols=157 Identities=16% Similarity=0.262 Sum_probs=119.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+++||+++|++|||||||+++|.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-MRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-THHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-HHHHHHhcCCEEE
Confidence 45789999999999999999999998876655 344333 233566665 578899999999988 7889999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +.....|+..+...... .++|+++|+||+|+.......+....+.+...
T Consensus 81 ~v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~------------------ 139 (189)
T 4dsu_A 81 CVFAINNTKS-FEDIHHYREQIKRVKDS--EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG------------------ 139 (189)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHTTC--SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT------------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEECccCcccccCHHHHHHHHHHcC------------------
Confidence 9999999654 77777777777653222 34999999999999865544444444443332
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 140 --------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 162 (189)
T 4dsu_A 140 --------------------IPFIETSAKTRQG---VDDAFYTLVR 162 (189)
T ss_dssp --------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=182.63 Aligned_cols=157 Identities=18% Similarity=0.132 Sum_probs=110.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccccccccee--eEEEEecCc--eEEEEECCCchh--hhhhhHHHhhhcCCE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKEN--VGNFTYEKK--NIKIVDLPGEDR--LRNKFFDQYKSSAKG 82 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~--~~~i~D~~G~~~--~~~~~~~~~~~~~d~ 82 (211)
.+.+||+++|++|||||||+++|++..+...+++.+.. ...+.+++. .+.+|||||++. +.. +...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSW-SQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CH-HHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhh-hHHhhcccCCE
Confidence 45689999999999999999999998876666665544 344667665 788999999987 444 56778889999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+.... ....+....+
T Consensus 81 ~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--------------- 142 (175)
T 2nzj_A 81 YVIVYSIADRGS-FESASELRIQLRRTHQA--DHVPIILVGNKADLARCREVSVEEGRACAVVFD--------------- 142 (175)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT---------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhhcc--CCCCEEEEEEChhhccccccCHHHHHHHHHHcC---------------
Confidence 999999998665 77888777776654222 2499999999999986554321 1112221111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 143 -----------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 165 (175)
T 2nzj_A 143 -----------------------CKFIETSATLQHN---VAELFEGVVR 165 (175)
T ss_dssp -----------------------SEEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CeEEEEecCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=182.63 Aligned_cols=157 Identities=15% Similarity=0.239 Sum_probs=118.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+++||+++|++|||||||+++|.++.+...+ +|++..... +.+++. .+.+|||||++.+.. ++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-MRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-HHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHhccCCEEEE
Confidence 4589999999999999999999998876555 555544432 455544 789999999999888 78889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+.. .+....+.+.+
T Consensus 81 v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------------- 138 (167)
T 1c1y_A 81 VYSITAQST-FNDLQDLREQILRVKDT--EDVPMILVGNKCDLEDERVVGKEQGQNLARQW------------------- 138 (167)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHHCC--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------------
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhhCc--CCCcEEEEEECccccccccCCHHHHHHHHHHc-------------------
Confidence 999998654 77777777666543222 34999999999999765442 11122222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| ++++++||.+
T Consensus 139 ------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 163 (167)
T 1c1y_A 139 ------------------CNCAFLESSAKSKIN---VNEIFYDLVR 163 (167)
T ss_dssp ------------------TSCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------cCCcEEEecCCCCCC---HHHHHHHHHH
Confidence 126889999999999 9999999864
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=180.19 Aligned_cols=156 Identities=19% Similarity=0.280 Sum_probs=116.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.+||+++|++|||||||+++|.++.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-IRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHH-HHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHH-HHHHHhhcCCEEEE
Confidence 5689999999999999999999998876555 45544433 3566665 789999999999888 78889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+... +....+.+..+
T Consensus 82 v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------ 140 (168)
T 1u8z_A 82 VFSITEMES-FAATADFREQILRVKED--ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN------------------ 140 (168)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHHCC--TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT------------------
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEECccccccCccCHHHHHHHHHHcC------------------
Confidence 999998665 77777777777653222 249999999999997654422 11112221111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 141 --------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 163 (168)
T 1u8z_A 141 --------------------VNYVETSAKTRAN---VDKVFFDLMR 163 (168)
T ss_dssp --------------------CEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------CeEEEeCCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999865
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=184.51 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=118.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc--eeeEEEEecC---ceEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK--ENVGNFTYEK---KNIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~--~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
..+.+||+++|++|||||||+++|.++.+...+ ||++ .....+.+++ ..+.+|||||++.+.. .+..+++++|
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d 81 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK-MLDKYIYGAQ 81 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-THHHHHTTCS
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-hhhHHHhhCC
Confidence 456799999999999999999999998876544 6665 3445577776 4899999999999988 6888999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccc
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
++++|+|++++.+ +.....|+..+....... .+.| +++|+||+|+.+.+.. .+....+.+..+
T Consensus 82 ~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------- 146 (178)
T 2hxs_A 82 GVLLVYDITNYQS-FENLEDWYTVVKKVSEES-ETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG------------- 146 (178)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHHHHHHHHHH-TCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHHhccc-CCCCeEEEEEEccccccccccCHHHHHHHHHHcC-------------
Confidence 9999999999665 666666666554321000 1145 8999999999765432 222222222222
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 147 -------------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 169 (178)
T 2hxs_A 147 -------------------------FSSHFVSAKTGDS---VFLCFQKVAA 169 (178)
T ss_dssp -------------------------CEEEEECTTTCTT---HHHHHHHHHH
T ss_pred -------------------------CcEEEEeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999865
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=182.76 Aligned_cols=159 Identities=14% Similarity=0.245 Sum_probs=121.7
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
...+.+||+++|++|||||||+++|.++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-MREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-CHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHHhhCCE
Confidence 3456789999999999999999999998876655 55555443 3566664 788999999999888 68889999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..++..... .++|+++|+||+|+...+... +....+....
T Consensus 84 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------------- 144 (181)
T 2fn4_A 84 FLLVFAINDRQS-FNEVGKLFTQILRVKDR--DDFPVVLVGNKADLESQRQVPRSEASAFGASH---------------- 144 (181)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHHHTS--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT----------------
T ss_pred EEEEEeCCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccccccCHHHHHHHHHHc----------------
Confidence 999999999654 77788887777543222 348999999999998654432 2222222111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| ++++++||.+
T Consensus 145 ----------------------~~~~~~~Sa~~~~g---v~~l~~~l~~ 168 (181)
T 2fn4_A 145 ----------------------HVAYFEASAKLRLN---VDEAFEQLVR 168 (181)
T ss_dssp ----------------------TCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------CCeEEEecCCCCCC---HHHHHHHHHH
Confidence 26889999999999 9999999864
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=201.91 Aligned_cols=161 Identities=21% Similarity=0.375 Sum_probs=128.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
++.+||+++|.+|||||||+++|.++.+....||++.....+..++..+.+|||||++.+.. ++..+++.+|++|+|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CC-SHHHHHTTEEEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHH-HHHHHhccCCEEEEEEE
Confidence 45679999999999999999999999988888999988888888888999999999999998 78889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++......+ +|+++|+||+|+.+.....++...+....
T Consensus 242 ~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilV~NK~Dl~~~~~~~~i~~~~~~~~----------------------- 295 (329)
T 3o47_A 242 SNDRER-VNEAREELMRMLAEDELRD--AVLLVFANKQDLPNAMNAAEITDKLGLHS----------------------- 295 (329)
T ss_dssp TTCSSS-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHHTCTT-----------------------
T ss_pred CCchHH-HHHHHHHHHHHHhhhccCC--CeEEEEEECccCCcccCHHHHHHHhchhh-----------------------
Confidence 998665 8888888888887644334 99999999999987766544333221000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++++|||++|+| +++++++|.+
T Consensus 296 -----------~~~~~~~~~~vSAk~g~g---i~el~~~l~~ 323 (329)
T 3o47_A 296 -----------LRHRNWYIQATCATSGDG---LYEGLDWLSN 323 (329)
T ss_dssp -----------CCSSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred -----------hhcCCCEEEEEECCCCcC---HHHHHHHHHH
Confidence 002347899999999999 9999999875
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=181.38 Aligned_cols=158 Identities=13% Similarity=0.230 Sum_probs=120.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-MREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-SHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-HHHHHHhcCCEE
Confidence 345789999999999999999999988876555 5555443 33566665 567799999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+... +....+.+..+
T Consensus 94 i~v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------------- 154 (183)
T 3kkq_A 94 LIVYSVTDKAS-FEHVDRFHQLILRVKDR--ESFPMILVANKVDLMHLRKVTRDQGKEMATKYN---------------- 154 (183)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHHTS--SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEECCCchhccCcCHHHHHHHHHHhC----------------
Confidence 99999999655 77777777776543222 348999999999997644432 22222332222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeee-cCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGL-DSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||+ +|+| +++++++|.+
T Consensus 155 ----------------------~~~~~~Sa~~~~~~---v~~l~~~l~~ 178 (183)
T 3kkq_A 155 ----------------------IPYIETSAKDPPLN---VDKTFHDLVR 178 (183)
T ss_dssp ----------------------CCEEEEBCSSSCBS---HHHHHHHHHH
T ss_pred ----------------------CeEEEeccCCCCCC---HHHHHHHHHH
Confidence 678999999 9999 9999999875
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=178.11 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=118.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+||+++|++|||||||+++|.++.+...+ |+.+... ..+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~~i 80 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS-LAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GHHHHHTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh-hhhhhhccCcEEE
Confidence 3579999999999999999999998876544 6665443 44566654 899999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC---CCH-HHHHHHHHHHHHHHhhhcccccccch
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA---KSS-SVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+... +.. .+....+.+...
T Consensus 81 ~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-------------- 142 (170)
T 1ek0_A 81 VVYDVTKPQS-FIKARHWVKELHEQA---SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-------------- 142 (170)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT--------------
T ss_pred EEEecCChHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC--------------
Confidence 9999999655 777777777766432 234999999999999765 222 122222222111
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 143 ------------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 165 (170)
T 1ek0_A 143 ------------------------LLFFETSAKTGEN---VNDVFLGIGE 165 (170)
T ss_dssp ------------------------CEEEECCTTTCTT---HHHHHHHHHT
T ss_pred ------------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999975
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=180.06 Aligned_cols=156 Identities=19% Similarity=0.288 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+++||+++|++|||||||++++.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-MRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-HHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHhccCCEEEE
Confidence 4589999999999999999999998876555 444433 334566665 589999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....++..+...... .++|+++|+||+|+...+... +....+.+..+
T Consensus 81 v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------ 139 (167)
T 1kao_A 81 VYSLVNQQS-FQDIKPMRDQIIRVKRY--EKVPVILVGNKVDLESEREVSSSEGRALAEEWG------------------ 139 (167)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT------------------
T ss_pred EEeCCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECCcccccccCCHHHHHHHHHHhC------------------
Confidence 999998654 77777777777653222 249999999999997654432 22222222221
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 140 --------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 162 (167)
T 1kao_A 140 --------------------CPFMETSAKSKTM---VDELFAEIVR 162 (167)
T ss_dssp --------------------SCEEEECTTCHHH---HHHHHHHHHH
T ss_pred --------------------CCEEEecCCCCcC---HHHHHHHHHH
Confidence 5789999999999 9999999864
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=181.11 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=115.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+.+||+++|++|||||||+++++++.+...+ ||.+.....+.+++. .+.+|||+|++.+. +++++|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~i 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ------FAAWVDAVV 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH------HHHHCSEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh------eecCCCEEE
Confidence 456799999999999999999999998886655 454434445777775 67889999998766 556799999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC--CCCH-HHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL--AKSS-SVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~--~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|||++++.+ +..+..|+..+.......+ +|+++|+||+|+.. .+.. .+....+.+.+.
T Consensus 91 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--------------- 152 (184)
T 3ihw_A 91 FVFSLEDEIS-FQTVYNYFLRLCSFRNASE--VPMVLVGTQDAISAANPRVIDDSRARKLSTDLK--------------- 152 (184)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHTTSCGGG--SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT---------------
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccccccccCHHHHHHHHHHcC---------------
Confidence 9999999665 8888888888776432233 89999999999952 2221 111222222111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| +++++++|.+
T Consensus 153 ----------------------~~~~~e~Sa~~~~g---v~~lf~~l~~ 176 (184)
T 3ihw_A 153 ----------------------RCTYYETCATYGLN---VERVFQDVAQ 176 (184)
T ss_dssp ----------------------TCEEEEEBTTTTBT---HHHHHHHHHH
T ss_pred ----------------------CCeEEEecCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999865
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=178.48 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=119.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
+.+.+||+++|++|||||||+++|+++.+...+ ++.+... ..+.+++. .+.+|||||++.+.. .+..+++.+|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~ 81 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS-LAPMYYRGAQA 81 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GHHHHHTTCSE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh-hhHHhccCCCE
Confidence 346789999999999999999999988876544 5555443 34555543 899999999999988 68889999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+.... .+++|+++|+||+|+.+.+... +....+.+.
T Consensus 82 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~----------------- 140 (170)
T 1r2q_A 82 AIVVYDITNEES-FARAKNWVKELQRQA---SPNIVIALSGNKADLANKRAVDFQEAQSYADD----------------- 140 (170)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECccCccccccCHHHHHHHHHH-----------------
Confidence 999999998654 777777777766432 2349999999999997654321 111111111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++++++|.+
T Consensus 141 ---------------------~~~~~~~~Sa~~g~g---i~~l~~~i~~ 165 (170)
T 1r2q_A 141 ---------------------NSLLFMETSAKTSMN---VNEIFMAIAK 165 (170)
T ss_dssp ---------------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------cCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 116889999999999 9999999975
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=182.91 Aligned_cols=158 Identities=19% Similarity=0.273 Sum_probs=120.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.++|+++|++|||||||+++|.++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-IRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-HHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHH-HHHHHHhhCCEE
Confidence 345689999999999999999999998876655 4554433 34666665 789999999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+... +....+.+..+
T Consensus 90 i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 150 (206)
T 2bov_A 90 LCVFSITEMES-FAATADFREQILRVKED--ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN---------------- 150 (206)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHTTC--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEeccCccccccccHHHHHHHHHHhC----------------
Confidence 99999999665 77777777777653222 249999999999997654421 11112222121
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++||.+
T Consensus 151 ----------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 173 (206)
T 2bov_A 151 ----------------------VNYVETSAKTRAN---VDKVFFDLMR 173 (206)
T ss_dssp ----------------------CEEEEECTTTCTT---HHHHHHHHHH
T ss_pred ----------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=184.28 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=114.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++++|++|
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~ii 106 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT-ITQSYYRSANGAI 106 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHH-HHHHHHTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHH-HHHHHHhhCCEEE
Confidence 3589999999999999999999998875544 565543 445677764 899999999999988 7889999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+...+... +....+.+..+
T Consensus 107 lv~D~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~----------------- 165 (201)
T 2hup_A 107 LAYDITKRSS-FLSVPHWIEDVRKYA---GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYD----------------- 165 (201)
T ss_dssp EEEETTBHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECCccccccccCHHHHHHHHHHcC-----------------
Confidence 9999998665 777777777765432 2349999999999998644321 11122221111
Q ss_pred ccccccCCCCCCeeecCCCCcE-EEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQV-SFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ .+++|||++|+| ++++++||.+
T Consensus 166 ---------------------~~~~~~~SA~~g~g---i~~l~~~l~~ 189 (201)
T 2hup_A 166 ---------------------ILCAIETSAKDSSN---VEEAFLRVAT 189 (201)
T ss_dssp ---------------------CSEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 4 789999999999 9999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=177.33 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=118.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|.++.+...+ ++.+... ..+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~~~~ 82 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA-LAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GTHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc-ccHhhCcCCCEE
Confidence 45689999999999999999999998875543 5555443 34556554 889999999999988 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+... ..+.+|+++|+||+|+.+.+.. .+....+.+..
T Consensus 83 i~v~d~~~~~s-~~~~~~~~~~l~~~---~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------- 141 (170)
T 1z0j_A 83 IIVYDITKEET-FSTLKNWVRELRQH---GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI----------------- 141 (170)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHH---SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHh---CCCCCcEEEEEECCccccccccCHHHHHHHHHHc-----------------
Confidence 99999998654 67777776666542 1234899999999999865443 22222222111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++|+| +++++++|.+
T Consensus 142 ---------------------~~~~~~~Sa~~~~~---i~~l~~~i~~ 165 (170)
T 1z0j_A 142 ---------------------HAIFVETSAKNAIN---INELFIEISR 165 (170)
T ss_dssp ---------------------TCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCcC---HHHHHHHHHH
Confidence 16889999999999 9999999865
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=181.48 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=118.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+||+++|++|||||||+++|++..+...+ +|.+.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii 92 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-LTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-SHHHHHTTCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-hhHHHhccCCEEE
Confidence 4689999999999999999999998875444 555544 344566654 899999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +.....|+..+...... .++|+++|+||+|+.......+....+.+..
T Consensus 93 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------------------- 150 (195)
T 1x3s_A 93 LVYDVTRRDT-FVKLDNWLNELETYCTR--NDIVNMLVGNKIDKENREVDRNEGLKFARKH------------------- 150 (195)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHTTCCSC--SCCEEEEEEECTTSSSCCSCHHHHHHHHHHT-------------------
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHhcCc--CCCcEEEEEECCcCcccccCHHHHHHHHHHc-------------------
Confidence 9999998654 77777777777654222 3499999999999964332222222222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| +++++++|.+
T Consensus 151 -------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 174 (195)
T 1x3s_A 151 -------------------SMLFIEASAKTCDG---VQCAFEELVE 174 (195)
T ss_dssp -------------------TCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------CCEEEEecCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999865
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=179.12 Aligned_cols=155 Identities=11% Similarity=0.131 Sum_probs=111.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+.+||+++|++|||||||+++|+++.+....||++..+. .+.+++. .+.+|||||++.. .+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA------KFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH------HHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCchh------HHHHhCCEEEE
Confidence 4678999999999999999999999888775677765443 3666665 7889999999762 35677999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC--CCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL--AKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~--~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|++++.+ +.....|+..+.........++|+++|+||+|+.. .+.. .+....+.+..
T Consensus 79 v~D~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------- 140 (178)
T 2iwr_A 79 VFSLEDENS-FQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM----------------- 140 (178)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-----------------
T ss_pred EEECcCHHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-----------------
Confidence 999999665 77777754333221111123499999999999942 2221 11122222111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| +++++++|.+
T Consensus 141 --------------------~~~~~~~~Sa~~~~~---i~~lf~~l~~ 165 (178)
T 2iwr_A 141 --------------------KRCSYYETXATYGLN---VDRVFQEVAQ 165 (178)
T ss_dssp --------------------SSEEEEEEBTTTTBT---HHHHHHHHHH
T ss_pred --------------------cCCeEEEEeccccCC---HHHHHHHHHH
Confidence 127899999999999 9999999864
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=183.33 Aligned_cols=157 Identities=16% Similarity=0.286 Sum_probs=119.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI-FPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-CCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH-HHHHHHhcCCEEE
Confidence 35789999999999999999999988876655 5555544 33566664 678999999999877 6788899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +..+..|+..+..... ..++|+++|+||+|+...+... +....+.+..+
T Consensus 83 ~v~d~~~~~s-~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------- 142 (181)
T 3t5g_A 83 LVYSVTSIKS-FEVIKVIHGKLLDMVG--KVQIPIMLVGNKKDLHMERVISYEEGKALAESWN----------------- 142 (181)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcceecHHHHHHHHHHhC-----------------
Confidence 9999999655 8888888777765422 2349999999999997655432 22222222222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++||++|+| +++++++|.+
T Consensus 143 ---------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 165 (181)
T 3t5g_A 143 ---------------------AAFLESSAKENQT---AVDVFRRIIL 165 (181)
T ss_dssp ---------------------CEEEECCTTSHHH---HHHHHHHHHH
T ss_pred ---------------------CcEEEEecCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999865
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=180.63 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=119.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-IRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-HHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHH-HHHHHhccCCEE
Confidence 345689999999999999999999998876655 44444433 3566665 789999999999888 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH--HHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS--SVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+.. .+..+ +.+..
T Consensus 94 i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~---------------- 153 (187)
T 2a9k_A 94 LCVFSITEMES-FAATADFREQILRVKED--ENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQW---------------- 153 (187)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHHCC--TTCCEEEEEECGGGGGGCCSCHHHHHH-HHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccCccCHHHHHH-HHHHc----------------
Confidence 99999998665 77777777776653222 24999999999999765432 22221 11111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|+| ++++++||.+
T Consensus 154 ----------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 177 (187)
T 2a9k_A 154 ----------------------NVNYVETSAKTRAN---VDKVFFDLMR 177 (187)
T ss_dssp ----------------------TCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------CCeEEEeCCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999865
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=179.11 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=107.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||+++|++....... ++.......+.+++. .+.+|||||++.+...++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 368999999999999999999976653322 233334445667665 788999999998876456677888999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....|+..+....... ++|+++|+||+|+.+.+... +....+.+..+
T Consensus 82 v~d~~~~~s-~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------ 140 (169)
T 3q85_A 82 VFSVTDRRS-FSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLS------------------ 140 (169)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT------------------
T ss_pred EEECCChHH-HHHHHHHHHHHHhcccCC--CCCEEEEeeCcchhhcccCCHHHHHHHHHHcC------------------
Confidence 999999654 888888888877643222 49999999999997554432 22222222222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 141 --------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 163 (169)
T 3q85_A 141 --------------------CKHIETSAALHHN---TRELFEGAVR 163 (169)
T ss_dssp --------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CcEEEecCccCCC---HHHHHHHHHH
Confidence 6889999999999 9999999865
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=177.58 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=119.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++|+++.+.... ++++... ..+.+++. .+.+|||||++.+.. .+..+++.+|+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ 87 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAAA 87 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG-GTHHHHTTCSE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh-hhHHHhccCCE
Confidence 345689999999999999999999998876544 5555433 34556654 899999999999988 68888999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|+|+|++++.+ +.....|+..+.... .+++|+++|+||+|+.+.+... +....+.+..
T Consensus 88 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~---------------- 147 (181)
T 2efe_B 88 AIIVFDVTNQAS-FERAKKWVQELQAQG---NPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN---------------- 147 (181)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT----------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECCcccccccCCHHHHHHHHHHc----------------
Confidence 999999998654 777777777766532 2349999999999997654421 1112222111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|+| ++++++||.+
T Consensus 148 ----------------------~~~~~~~Sa~~g~g---i~~l~~~l~~ 171 (181)
T 2efe_B 148 ----------------------GLFFMETSAKTATN---VKEIFYEIAR 171 (181)
T ss_dssp ----------------------TCEEEECCSSSCTT---HHHHHHHHHH
T ss_pred ----------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999975
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=184.22 Aligned_cols=156 Identities=10% Similarity=0.150 Sum_probs=116.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++..... +.+++. .+.+|||||++.+.. ++..+++++|+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR-LRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-TGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH-HhHhhccCCcEEE
Confidence 45689999999999999999999998886554 566655444 556655 679999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC--C-HHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK--S-SSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|+|++++.+ +..+...|...+... . .++|+++|+||+|+.... . ..+....+.+.++
T Consensus 100 ~v~d~~~~~s-~~~~~~~~~~~~~~~-~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------------- 160 (194)
T 3reg_A 100 LCFAVNNRTS-FDNISTKWEPEIKHY-I--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG--------------- 160 (194)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH-C--TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT---------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC---------------
Confidence 9999999655 777644444444321 1 349999999999997532 1 1222222322222
Q ss_pred hcccccccCCCCCCeeecCCCCcEE-EEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVS-FCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.. +++|||++|+| +++++++|.+
T Consensus 161 -----------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 184 (194)
T 3reg_A 161 -----------------------CVAYIEASSVAKIG---LNEVFEKSVD 184 (194)
T ss_dssp -----------------------CSCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CCEEEEeecCCCCC---HHHHHHHHHH
Confidence 33 79999999999 9999999875
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=183.60 Aligned_cols=156 Identities=20% Similarity=0.248 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+... .||++... ..+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 84 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGI 84 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------CCTTTTTCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-hHHHHHhcCCEE
Confidence 3468999999999999999999998877544 36666443 44667663 899999999999887 678889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+.+.+.. .+....+.+..+
T Consensus 85 i~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------------- 144 (183)
T 2fu5_C 85 MLVYDITNEKS-FDNIRNWIRNIEEHA---SADVEKMILGNKCDVNDKRQVSKERGEKLALDYG---------------- 144 (183)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC----------------
Confidence 99999999665 777777777765421 234899999999999865442 222222222222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 145 ----------------------~~~~~~Sa~~~~~---i~~l~~~l~~ 167 (183)
T 2fu5_C 145 ----------------------IKFMETSAKANIN---VENAFFTLAR 167 (183)
T ss_dssp ----------------------CEEEECCC---CC---HHHHHHHHHH
T ss_pred ----------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=175.43 Aligned_cols=155 Identities=17% Similarity=0.295 Sum_probs=116.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++.++.+...+ ++++... ..+.+++. .+.+|||||++.+.. .+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-MRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH-HHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH-HHHHhhccCCEEEEE
Confidence 579999999999999999999988776554 4444433 33556554 688999999998888 688888999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.....+....+.+..+
T Consensus 82 ~d~~~~~~-~~~~~~~~~~i~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-------------------- 138 (166)
T 2ce2_X 82 FAINNTKS-FEDIHQYREQIKRVKDS--DDVPMVLVGNKSDLAARTVESRQAQDLARSYG-------------------- 138 (166)
T ss_dssp EETTCHHH-HHHHHHHHHHHHHHHTC--SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT--------------------
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEEchhhhhcccCHHHHHHHHHHcC--------------------
Confidence 99998654 77777776666543221 24999999999999864333333333332222
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++||.+
T Consensus 139 ------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 161 (166)
T 2ce2_X 139 ------------------IPYIETSAKTRQG---VEDAFYTLVR 161 (166)
T ss_dssp ------------------CCEEEECTTTCTT---HHHHHHHHHH
T ss_pred ------------------CeEEEecCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=180.61 Aligned_cols=157 Identities=15% Similarity=0.232 Sum_probs=119.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeE---EEEecC-----------ceEEEEECCCchhhhhhhH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVG---NFTYEK-----------KNIKIVDLPGEDRLRNKFF 73 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~---~~~~~~-----------~~~~i~D~~G~~~~~~~~~ 73 (211)
...+||+++|++|||||||+++|.++.+... .+|++.... .+.+++ ..+.+|||||++.+.. .+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~ 87 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS-LT 87 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH-HH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH-HH
Confidence 4568999999999999999999999887544 366666544 345553 2799999999999988 68
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhc
Q psy1914 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~ 152 (211)
..+++++|++|+|+|++++.+ +..+..|+..+....... ++|+++|+||+|+.+.+.. .+....+.+..+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------ 158 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQS-FLNVRNWISQLQMHAYSE--NPDIVLCGNKSDLEDQRAVKEEEARELAEKYG------ 158 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSSSS--SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT------
T ss_pred HHHHcCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcC------
Confidence 889999999999999998655 777777777766532222 3899999999999764432 122222222221
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 159 --------------------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 181 (195)
T 3bc1_A 159 --------------------------------IPYFETSAANGTN---ISHAIEMLLD 181 (195)
T ss_dssp --------------------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------------------CCEEEEECCCCCC---HHHHHHHHHH
Confidence 5679999999999 9999999865
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=181.01 Aligned_cols=156 Identities=27% Similarity=0.334 Sum_probs=120.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ ++++. ....+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~ 92 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGI 92 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT-THHHHHTTCSEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh-hHHHHHhhCCEE
Confidence 34589999999999999999999998875544 55554 3445677764 799999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... .....+.+.++
T Consensus 93 i~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 152 (196)
T 3tkl_A 93 IVVYDVTDQES-FNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG---------------- 152 (196)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccccCHHHHHHHHHHcC----------------
Confidence 99999999654 777777776665422 2348999999999998665432 22222322222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 153 ----------------------~~~~~~Sa~~g~g---v~~l~~~l~~ 175 (196)
T 3tkl_A 153 ----------------------IPFLETSAKNATN---VEQSFMTMAA 175 (196)
T ss_dssp ----------------------CCEEEECTTTCTT---HHHHHHHHHH
T ss_pred ----------------------CcEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=183.42 Aligned_cols=155 Identities=20% Similarity=0.232 Sum_probs=118.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|+++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++.+|++|
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~i 103 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS-ITQSYYRSANALI 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHGGGSTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHHhcCCEEE
Confidence 4589999999999999999999998875444 6665443 44667665 789999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +..+..|+..+... ...++|+++|+||+|+...+... +....+.+..+
T Consensus 104 ~v~D~~~~~s-~~~~~~~~~~i~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~----------------- 162 (201)
T 2ew1_A 104 LTYDITCEES-FRCLPEWLREIEQY---ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD----------------- 162 (201)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHh---cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------
Confidence 9999998654 77777777666542 12348999999999997554321 21222221111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 163 ---------------------~~~~~~Sa~~g~g---v~~l~~~l~~ 185 (201)
T 2ew1_A 163 ---------------------MYYLETSAKESDN---VEKLFLDLAC 185 (201)
T ss_dssp ---------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=178.38 Aligned_cols=155 Identities=23% Similarity=0.330 Sum_probs=114.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|.++.+...+ ++++... ..+.+++. .+.+|||||++.+.. .+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT-ITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC-CCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh-hHHHHhccCCEEE
Confidence 3579999999999999999999998875443 5555443 44566654 789999999999888 6788899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.......+....+.+..+
T Consensus 81 ~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------------ 138 (170)
T 1g16_A 81 LVYDITDERT-FTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEALAKELG------------------ 138 (170)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT------------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECccCCcCccCHHHHHHHHHHcC------------------
Confidence 9999998654 777777776665432 234899999999999543333222333332222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 139 --------------------~~~~~~Sa~~~~g---v~~l~~~l~~ 161 (170)
T 1g16_A 139 --------------------IPFIESSAKNDDN---VNEIFFTLAK 161 (170)
T ss_dssp --------------------CCEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=180.99 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=115.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESCTSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++|++.... ...++++ .....+.+++. .+.+|||+|++.+...++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 456789999999999999999999754432 2223333 33444667765 788999999987764367778889999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|+|+|++++.+ +..+..|+..+...... .++|+++|+||+|+...+... +....+.+...
T Consensus 100 ~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~--------------- 161 (195)
T 3cbq_A 100 FLIVFSVTDRRS-FSKVPETLLRLRAGRPH--HDLPVILVGNKSDLARSREVSLEEGRHLAGTLS--------------- 161 (195)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHSTT--SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT---------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEeechhccccCCcCHHHHHHHHHHhC---------------
Confidence 999999999655 88888888777643221 249999999999997654432 11222222111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+++|||++|+| +++++++|.+
T Consensus 162 -----------------------~~~~e~Sa~~~~~---v~~lf~~l~~ 184 (195)
T 3cbq_A 162 -----------------------CKHIETSAALHHN---TRELFEGAVR 184 (195)
T ss_dssp -----------------------CEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CEEEEEcCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=177.46 Aligned_cols=155 Identities=21% Similarity=0.308 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+++||+++|++|||||||+++|+++.+...+ ++++.. ...+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~~i 91 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GSHHHHHTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH-HHHHHhcCCCEEE
Confidence 4589999999999999999999988875544 555543 344666664 899999999999988 6888899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+..+
T Consensus 92 ~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------- 150 (179)
T 2y8e_A 92 VVYDITNTNS-FHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN----------------- 150 (179)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHHHHH---TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC-----------------
Confidence 9999998654 777777777665432 1348999999999997654432 11112221111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 151 ---------------------~~~~~~Sa~~~~~---i~~l~~~l~~ 173 (179)
T 2y8e_A 151 ---------------------VMFIETSAKAGYN---VKQLFRRVAA 173 (179)
T ss_dssp ---------------------CEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999875
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=179.12 Aligned_cols=156 Identities=20% Similarity=0.284 Sum_probs=118.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|+++.+...+ ++++.. ...+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 86 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS-VTRSYYRGAAGA 86 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHHTTSTTCSEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHHhcCCEE
Confidence 44689999999999999999999998875544 555543 344566664 889999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+.... ....+.+.
T Consensus 87 i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------------ 144 (186)
T 2bme_A 87 LLVYDITSRET-YNALTNWLTDARMLA---SQNIVIILCGNKKDLDADREVTFLEASRFAQE------------------ 144 (186)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH------------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHHHHH------------------
Confidence 99999999654 777777776654321 23489999999999975444321 11111111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| +++++++|.+
T Consensus 145 --------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 169 (186)
T 2bme_A 145 --------------------NELMFLETSALTGEN---VEEAFVQCAR 169 (186)
T ss_dssp --------------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------cCCEEEEecCCCCCC---HHHHHHHHHH
Confidence 116889999999999 9999999864
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=177.49 Aligned_cols=155 Identities=13% Similarity=0.202 Sum_probs=118.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-ITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-CCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-HHHHHhcCCCEE
Confidence 45789999999999999999999998876554 555543 344566654 899999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... .+.|+++|+||+|+.+.+.. .+....+.+..+
T Consensus 82 i~v~d~~~~~s-~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 140 (168)
T 1z2a_A 82 VLVFSTTDRES-FEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK---------------- 140 (168)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECcccCcccccCHHHHHHHHHHcC----------------
Confidence 99999998654 777777776665432 23899999999999765432 222222222222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++||.+
T Consensus 141 ----------------------~~~~~~Sa~~~~~---i~~l~~~l~~ 163 (168)
T 1z2a_A 141 ----------------------LRFYRTSVKEDLN---VSEVFKYLAE 163 (168)
T ss_dssp ----------------------CEEEECBTTTTBS---SHHHHHHHHH
T ss_pred ----------------------CeEEEEecCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999865
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=179.10 Aligned_cols=158 Identities=15% Similarity=0.224 Sum_probs=118.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|+++.+...+ ++++. ....+.+++. .+.+|||||++.+...++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 45689999999999999999999988876544 55554 3445666664 8999999999999833788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+..... ..++|+++|+||+|+.+.+.. .+....+.+..
T Consensus 98 ilv~D~~~~~s-~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------- 157 (189)
T 1z06_A 98 VFVYDMTNMAS-FHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH----------------- 157 (189)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceeCHHHHHHHHHHc-----------------
Confidence 99999998655 7777777777665322 234999999999999765442 22222222211
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecC---CCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDS---ASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg---~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++| +| +++++++|.+
T Consensus 158 ---------------------~~~~~~~Sa~~~~~~~~---i~~l~~~l~~ 184 (189)
T 1z06_A 158 ---------------------SMPLFETSAKNPNDNDH---VEAIFMTLAH 184 (189)
T ss_dssp ---------------------TCCEEECCSSSGGGGSC---HHHHHHHHC-
T ss_pred ---------------------CCEEEEEeCCcCCcccC---HHHHHHHHHH
Confidence 157899999999 89 9999999864
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=178.27 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=111.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..+++++|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~ 81 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-LGPIYYRDSNG 81 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------CCSSTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-hHHHHhccCCE
Confidence 345789999999999999999999988875443 66665443 4566655 789999999999888 68888899999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+..
T Consensus 82 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------------- 141 (170)
T 1z08_A 82 AILVYDITDEDS-FQKVKNWVKELRKML---GNEICLCIVGNKIDLEKERHVSIQEAESYAESV---------------- 141 (170)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT----------------
T ss_pred EEEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccccCHHHHHHHHHHc----------------
Confidence 999999998654 777777766654321 1238999999999997654322 1112222111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++||.+
T Consensus 142 ----------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 165 (170)
T 1z08_A 142 ----------------------GAKHYHTSAKQNKG---IEELFLDLCK 165 (170)
T ss_dssp ----------------------TCEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------CCeEEEecCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999864
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=177.28 Aligned_cols=161 Identities=16% Similarity=0.211 Sum_probs=117.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
..+.+||+++|++|||||||+++|+++.+...+ ++++... ..+.+++. .+.+|||||++.+.. .+..+++.+|+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~ 82 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS-LRTPFYRGSDC 82 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHH-HHGGGGTTCSE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhh-hHHHHHhcCCE
Confidence 345789999999999999999999988875443 6666543 44566665 899999999999988 68889999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcC-cCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQ-VQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+..... ....++|+++|+||+|+.......+....+.+.
T Consensus 83 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----------------- 144 (177)
T 1wms_A 83 CLLTFSVDDSQS-FQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----------------- 144 (177)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-----------------
T ss_pred EEEEEECcCHHH-HHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-----------------
Confidence 999999998654 6666666666543211 111348999999999997433222222222110
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++|||++|+| +++++++|.+
T Consensus 145 --------------------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 170 (177)
T 1wms_A 145 --------------------NGDYPYFETSAKDATN---VAAAFEEAVR 170 (177)
T ss_dssp --------------------TTCCCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------cCCceEEEEeCCCCCC---HHHHHHHHHH
Confidence 0125789999999999 9999999865
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=184.51 Aligned_cols=157 Identities=16% Similarity=0.252 Sum_probs=117.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecC--ceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEK--KNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|.+|||||||+++|+++.+...+ +|++..... +.+++ ..+.+|||||++.+.. ++..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI-LPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-CCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH-HHHHHHhcCCEEE
Confidence 46789999999999999999999998887655 555544322 33333 3789999999999888 6888899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+...... .++|+++|+||+|+...+... .....+.+...
T Consensus 101 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~----------------- 160 (201)
T 3oes_A 101 LVYSVTSLHS-FQVIESLYQKLHEGHGK--TRVPVVLVGNKADLSPEREVQAVEGKKLAESWG----------------- 160 (201)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEeCCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccCccccccCHHHHHHHHHHhC-----------------
Confidence 9999999655 88888888887764322 348999999999998655432 22223332222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 161 ---------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 183 (201)
T 3oes_A 161 ---------------------ATFMESSARENQL---TQGIFTKVIQ 183 (201)
T ss_dssp ---------------------CEEEECCTTCHHH---HHHHHHHHHH
T ss_pred ---------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999865
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=179.96 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=117.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++|+++.+...+ +|++. ....+.+++. .+.+|||||++.+.. ++..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ 96 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-ITRSYYRGAAG 96 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-CCHHHHTTCSE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh-hHHHHhccCCE
Confidence 345689999999999999999999998875544 55554 3445667664 889999999999988 68888999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|+|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+...+.. .+....+.+..+
T Consensus 97 ii~v~d~~~~~s-~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------------- 157 (191)
T 2a5j_A 97 ALLVYDITRRET-FNHLTSWLEDARQHS---SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG--------------- 157 (191)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECcccCCccccCHHHHHHHHHHcC---------------
Confidence 999999998654 777777777765422 134999999999999764432 112222222221
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+++|||++|+| ++++++||.+
T Consensus 158 -----------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 180 (191)
T 2a5j_A 158 -----------------------LIFMETSAKTACN---VEEAFINTAK 180 (191)
T ss_dssp -----------------------CEEEEECTTTCTT---HHHHHHHHHH
T ss_pred -----------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=179.26 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=118.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|+++.+... .++.+.... .+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~i 99 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS-LAPMYYRGSAAA 99 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG-GTHHHHTTCSEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh-hhHHhhccCCEE
Confidence 4578999999999999999999999887543 366665443 3445443 899999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+.
T Consensus 100 ilV~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~------------------ 157 (192)
T 2fg5_A 100 VIVYDITKQDS-FYTLKKWVKELKEHG---PENIVMAIAGNKCDLSDIREVPLKDAKEYAES------------------ 157 (192)
T ss_dssp EEEEETTCTHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT------------------
T ss_pred EEEEeCCCHHH-HHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHHHH------------------
Confidence 99999998665 777777776665422 2349999999999997543321 111112111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| +++++++|.+
T Consensus 158 --------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 182 (192)
T 2fg5_A 158 --------------------IGAIVVETSAKNAIN---IEELFQGISR 182 (192)
T ss_dssp --------------------TTCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------cCCEEEEEeCCCCcC---HHHHHHHHHH
Confidence 126889999999999 9999999975
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=175.52 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=117.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ +|.+.. ...+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 91 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA-VTRSYYRGAAGA 91 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH-HHHHHHHTCSEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhh-hHHHHhccCCEE
Confidence 34689999999999999999999998876554 455543 334566554 889999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+... +....+.+..
T Consensus 92 i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 150 (179)
T 1z0f_A 92 LMVYDITRRST-YNHLSSWLTDARNLT---NPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN----------------- 150 (179)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEeCcCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHHHHHc-----------------
Confidence 99999998654 777777766665421 2348999999999997554321 1111221111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|+| ++++++||.+
T Consensus 151 ---------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 174 (179)
T 1z0f_A 151 ---------------------GLLFLEASAKTGEN---VEDAFLEAAK 174 (179)
T ss_dssp ---------------------TCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999864
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=178.91 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=115.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecC-------------------------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEK------------------------------- 54 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~------------------------------- 54 (211)
.+.+||+++|++|||||||+++|++..+...+ +|++.... .+.+++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46799999999999999999999998876544 55554333 344443
Q ss_pred --------ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy1914 55 --------KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 55 --------~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
..+.+|||||++.+.. .+..+++.+|++++|+|++++.+ +.....|+..+.... . .|+++|+||+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v~D~~~~~s-~~~~~~~~~~i~~~~---~--~piilv~NK~ 157 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS-IVPLYYRGATCAIVVFDISNSNT-LDRAKTWVNQLKISS---N--YIIILVANKI 157 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT-THHHHHTTCSEEEEEEETTCHHH-HHHHHHHHHHHHHHS---C--CEEEEEEECT
T ss_pred cccCccceeEEEEEECCCcHHHHH-HHHHHhcCCCEEEEEEECCCHHH-HHHHHHHHHHHHhhC---C--CcEEEEEECC
Confidence 5789999999999988 68889999999999999998654 777777777765432 2 8999999999
Q ss_pred CccCCC-CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 127 DQTLAK-SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 127 Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
|+.... ...+..+.+ +.. .+++++|||++|+| +++++
T Consensus 158 D~~~~~~~~~~~~~~~-~~~--------------------------------------~~~~~~~Sa~~~~~---i~~l~ 195 (208)
T 3clv_A 158 DKNKFQVDILEVQKYA-QDN--------------------------------------NLLFIQTSAKTGTN---IKNIF 195 (208)
T ss_dssp TCC-CCSCHHHHHHHH-HHT--------------------------------------TCEEEEECTTTCTT---HHHHH
T ss_pred CcccccCCHHHHHHHH-HHc--------------------------------------CCcEEEEecCCCCC---HHHHH
Confidence 943222 222222221 111 16889999999999 99999
Q ss_pred HHHhh
Q psy1914 206 DWMVT 210 (211)
Q Consensus 206 ~~i~~ 210 (211)
+||.+
T Consensus 196 ~~l~~ 200 (208)
T 3clv_A 196 YMLAE 200 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=180.32 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=117.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++..... +.+++. .+.+|||||++. .. .+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~-~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TI-QREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CH-HHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-cc-chhhhhccCCEE
Confidence 356899999999999999999999998876555 555554433 566654 799999999988 44 678888999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +..+..|+..+...... .++|+++|+||+|+...+... +....+.+...
T Consensus 103 ilv~D~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~---------------- 163 (196)
T 2atv_A 103 VLVYDITDRGS-FEEVLPLKNILDEIKKP--KNVTLILVGNKADLDHSRQVSTEEGEKLATELA---------------- 163 (196)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHHTT--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHhC----------------
Confidence 99999999665 77777777666543222 248999999999997654332 22222222221
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCC-CccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSA-SEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~-g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+ | ++++++||.+
T Consensus 164 ----------------------~~~~~~Sa~~g~~g---i~~l~~~l~~ 187 (196)
T 2atv_A 164 ----------------------CAFYECSACTGEGN---ITEIFYELCR 187 (196)
T ss_dssp ----------------------SEEEECCTTTCTTC---HHHHHHHHHH
T ss_pred ----------------------CeEEEECCCcCCcC---HHHHHHHHHH
Confidence 688999999999 9 9999999864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=178.70 Aligned_cols=156 Identities=20% Similarity=0.246 Sum_probs=119.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ +|.+... ..+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~i 84 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT-ITTAYYRGAMGF 84 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHHTTGGGCSEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcc-hHHHhhcCCCEE
Confidence 34589999999999999999999998875543 5555443 34555554 899999999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+.. .+....+.+.++
T Consensus 85 i~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 144 (203)
T 1zbd_A 85 ILMYDITNEES-FNAVQDWSTQIKTYS---WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG---------------- 144 (203)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHS---CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECcccCcccccCHHHHHHHHHHCC----------------
Confidence 99999998654 777777776665421 234899999999999765432 222222322222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 145 ----------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 167 (203)
T 1zbd_A 145 ----------------------FEFFEASAKDNIN---VKQTFERLVD 167 (203)
T ss_dssp ----------------------CEEEECBTTTTBS---SHHHHHHHHH
T ss_pred ----------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=179.45 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=118.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++|+++.+...+ ++.+. ....+.+++. .+.+|||||++.+.. .+..+++.+|+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ 84 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT-ITSTYYRGTHG 84 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS-CCGGGGTTCSE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh-hHHHHhccCCE
Confidence 455689999999999999999999988875443 55554 3445677774 799999999999888 68888999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+.... .++|+++|+||+|+.+..... .....+.....
T Consensus 85 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------------- 144 (181)
T 3tw8_B 85 VIVVYDVTSAES-FVNVKRWLHEINQNC----DDVCRILVGNKNDDPERKVVETEDAYKFAGQMG--------------- 144 (181)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHHC----TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECCCCchhcccCHHHHHHHHHHcC---------------
Confidence 999999999654 777777777765421 249999999999998655432 22222222222
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 145 -----------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 167 (181)
T 3tw8_B 145 -----------------------IQLFETSAKENVN---VEEMFNCITE 167 (181)
T ss_dssp -----------------------CCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999875
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=181.11 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=115.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++..+. .+.+++. .+.+|||||++.+.. + ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-C-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-T-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-H-HHHHhhCCEE
Confidence 345789999999999999999999998876655 56655442 3555554 788999999998876 4 5688899999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|||++++.+ +..+..|+..+.........++|+++|+||+|+...+... +....+.+.++
T Consensus 96 ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------------- 158 (187)
T 3c5c_A 96 LVVYSVDSRQS-FDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG---------------- 158 (187)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC----------------
Confidence 99999998665 8888888777664311001238999999999997654322 22222332222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEee-ecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTG-LDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~tg~g~~~i~~l~~~i~~ 210 (211)
+.+++||| ++|+| +++++++|.+
T Consensus 159 ----------------------~~~~e~Sa~~~g~g---v~~lf~~l~~ 182 (187)
T 3c5c_A 159 ----------------------CLFFEVSACLDFEH---VQHVFHEAVR 182 (187)
T ss_dssp ----------------------CEEEECCSSSCSHH---HHHHHHHHHH
T ss_pred ----------------------CcEEEEeecCcccc---HHHHHHHHHH
Confidence 68899999 89999 9999999864
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=184.24 Aligned_cols=157 Identities=18% Similarity=0.265 Sum_probs=117.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecC------------ceEEEEECCCchhhhhhhH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEK------------KNIKIVDLPGEDRLRNKFF 73 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~------------~~~~i~D~~G~~~~~~~~~ 73 (211)
...+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++ ..+.+|||||++.+.. .+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~ 101 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS-LT 101 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH-HH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh-HH
Confidence 34689999999999999999999998875544 55554433 344443 3799999999999988 68
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhc
Q psy1914 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTK 152 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~ 152 (211)
..+++.+|++|+|+|++++.+ +.....|+..+...... .++|+++|+||+|+...+... +....+.+..+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s-~~~~~~~l~~i~~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~------ 172 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQS-FLNVRNWMSQLQANAYC--ENPDIVLIGNKADLPDQREVNERQARELADKYG------ 172 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHH-HHHHHHHHHTCCCCCTT--TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT------
T ss_pred HHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcCc--CCCCEEEEEECCccccccccCHHHHHHHHHHCC------
Confidence 889999999999999998655 77777776655433211 349999999999997654432 22222222111
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 173 --------------------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 195 (217)
T 2f7s_A 173 --------------------------------IPYFETSAATGQN---VEKAVETLLD 195 (217)
T ss_dssp --------------------------------CCEEEEBTTTTBT---HHHHHHHHHH
T ss_pred --------------------------------CcEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=177.33 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=112.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc--cccccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE--SCTSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
.+.+||+++|++|||||||+++|+++.+.. ..+|++..... +.+++. .+.+|||||++.+.. .+..+++++|+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~ 86 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-VTHAYYRDAHA 86 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------CCGGGCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHccCCCE
Confidence 456899999999999999999999988742 33666655443 456665 889999999999988 68888999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+..+
T Consensus 87 ii~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------------- 147 (180)
T 2g6b_A 87 LLLLYDVTNKAS-FDNIQAWLTEIHEYA---QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG--------------- 147 (180)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT---------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhC---CCCCcEEEEEECcccCcccccCHHHHHHHHHHcC---------------
Confidence 999999998654 777777776665422 1348999999999998654322 12222222121
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 148 -----------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 170 (180)
T 2g6b_A 148 -----------------------LPFMETSAKTGLN---VDLAFTAIAK 170 (180)
T ss_dssp -----------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=178.69 Aligned_cols=158 Identities=16% Similarity=0.249 Sum_probs=108.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|.+|||||||+++|+++.+...+ +|++... ..+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-MRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-HHHHhhCcCCEE
Confidence 345689999999999999999999988876554 4444333 33566654 689999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.......+....+.+..+
T Consensus 97 i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 156 (190)
T 3con_A 97 LCVFAINNSKS-FADINLYREQIKRVKDS--DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG----------------- 156 (190)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHHTC--SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHHhCC--CCCeEEEEEECCcCCcccCCHHHHHHHHHHcC-----------------
Confidence 99999998654 77777766665432211 23899999999999763322222223322222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 157 ---------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 179 (190)
T 3con_A 157 ---------------------IPFIETSAKTRQG---VEDAFYTLVR 179 (190)
T ss_dssp ---------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=175.66 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=115.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.+||+++|++|||||||+++|.++.+...+ +|.+..... +..++. .+.+|||||++.+.. ++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA-MQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH-HHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHH-HHHHhcccCCEEEE
Confidence 4689999999999999999999998875443 555544433 444443 789999999999888 68888899999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....++..+..... ...++|+++|+||+|+.+.+.... ....+.....
T Consensus 81 v~d~~~~~~-~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~------------------ 140 (172)
T 2erx_A 81 VYSITSRQS-LEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWK------------------ 140 (172)
T ss_dssp EEETTCHHH-HHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT------------------
T ss_pred EEECcCHHH-HHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhC------------------
Confidence 999998654 6666666655543211 112389999999999976544321 1122221111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 141 --------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 163 (172)
T 2erx_A 141 --------------------CAFMETSAKLNHN---VKELFQELLN 163 (172)
T ss_dssp --------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CeEEEecCCCCcC---HHHHHHHHHH
Confidence 6789999999999 9999999976
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=181.01 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=119.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ ++.+.. ...+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~ 99 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT-ITTAYYRGAMGF 99 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHH-HHHHHHTTCCEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHH-HHHHHHccCCEE
Confidence 45689999999999999999999988875544 555433 344555544 799999999999998 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+... ...++|+++|+||+|+.+.+.. .+....+.+..+
T Consensus 100 i~v~d~~~~~s-~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 159 (191)
T 3dz8_A 100 ILMYDITNEES-FNAVQDWATQIKTY---SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG---------------- 159 (191)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHh---cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC----------------
Confidence 99999998654 77777776666542 1234999999999999765443 222223332222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 160 ----------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 182 (191)
T 3dz8_A 160 ----------------------FDFFEASAKENIS---VRQAFERLVD 182 (191)
T ss_dssp ----------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999865
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=179.32 Aligned_cols=159 Identities=17% Similarity=0.271 Sum_probs=116.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
....++|+++|++|||||||+++|.++.+...+ +|++..... +..++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPA-MQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHH-HHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHH-HHHHhhccCCEE
Confidence 346789999999999999999999998876544 555544433 444544 789999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +.....++..+..... ...++|+++|+||+|+.......+....+.....
T Consensus 84 i~v~d~~~~~s-~~~~~~~~~~i~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 144 (199)
T 2gf0_A 84 ILVFSVTSKQS-LEELGPIYKLIVQIKG-SVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK----------------- 144 (199)
T ss_dssp EEEEETTCHHH-HHTTHHHHHHHHHHHS-CGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCCccccCHHHHHHHHHHhC-----------------
Confidence 99999998654 6666666544433111 0123899999999999764332222222222222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+++|||++|+| ++++++||.+
T Consensus 145 ---------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 167 (199)
T 2gf0_A 145 ---------------------CAFMETSAKMNYN---VKELFQELLT 167 (199)
T ss_dssp ---------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CeEEEEecCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999875
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=178.00 Aligned_cols=156 Identities=22% Similarity=0.272 Sum_probs=118.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|++..+...+ +|.+.... .+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~v 101 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-ITSAYYRGAVGA 101 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-THHHHHTTCCEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-hhHHHhccCCEE
Confidence 34589999999999999999999998876544 55554433 3455443 889999999999888 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+... +....+....
T Consensus 102 i~v~D~~~~~s-~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 160 (193)
T 2oil_A 102 LLVFDLTKHQT-YAVVERWLKELYDHA---EATIVVMLVGNKSDLSQAREVPTEEARMFAENN----------------- 160 (193)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHTTS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCeEEEEEECCCcccccccCHHHHHHHHHHc-----------------
Confidence 99999998654 777777777776432 2348999999999997654321 1112221111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| +++++++|.+
T Consensus 161 ---------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 184 (193)
T 2oil_A 161 ---------------------GLLFLETSALDSTN---VELAFETVLK 184 (193)
T ss_dssp ---------------------TCEEEEECTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999864
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=180.74 Aligned_cols=157 Identities=13% Similarity=0.216 Sum_probs=109.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK-LRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS-SGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH-HhHhhcCCCcEE
Confidence 456789999999999999999999998876555 55554443 3566665 677999999999888 678889999999
Q ss_pred EEEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-------------HHHHHHHHHHHHHHh
Q psy1914 84 VYVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-------------SVVKTLLQKELNLVR 149 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-------------~~~~~~l~~~~~~~~ 149 (211)
++|+|++++.+ +.... .|+..+... . .++|+++|+||+|+...... .+....+.+.++
T Consensus 96 i~v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--- 167 (201)
T 2q3h_A 96 LLCFSVVSPSS-FQNVSEKWVPEIRCH--C--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK--- 167 (201)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH--C--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT---
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC---
Confidence 99999999665 77765 455444432 1 24999999999999753211 111111111111
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 168 ----------------------------------~~~~~~~Sa~~g~g---i~~l~~~l~~ 191 (201)
T 2q3h_A 168 ----------------------------------AASYIECSALTQKN---LKEVFDAAIV 191 (201)
T ss_dssp ----------------------------------CSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------------------CcEEEEEecCCCCC---HHHHHHHHHH
Confidence 13789999999999 9999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=179.42 Aligned_cols=157 Identities=22% Similarity=0.368 Sum_probs=113.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|.+|||||||+++|+++.+...+ +|.+.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~i 102 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-ITSAYYRSAKGI 102 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHH-HHHHHhcCCCEE
Confidence 45689999999999999999999988875443 555543 445666664 789999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+... ...++|+++|+||+|+...+... +....+.+.+
T Consensus 103 ilV~D~~~~~s-~~~~~~~~~~i~~~---~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~----------------- 161 (192)
T 2il1_A 103 ILVYDITKKET-FDDLPKWMKMIDKY---ASEDAELLLVGNKLDCETDREITRQQGEKFAQQI----------------- 161 (192)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHh---cCCCCcEEEEEECcccccccccCHHHHHHHHHhc-----------------
Confidence 99999998654 66666665554332 12349999999999997654432 1111221110
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++|||++|+| +++++++|.+
T Consensus 162 --------------------~~~~~~~~SA~~g~g---i~~l~~~l~~ 186 (192)
T 2il1_A 162 --------------------TGMRFCEASAKDNFN---VDEIFLKLVD 186 (192)
T ss_dssp --------------------TTCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 126889999999999 9999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=179.05 Aligned_cols=156 Identities=19% Similarity=0.310 Sum_probs=110.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|.+.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~i 104 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS-IAKSYFRKADGV 104 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHH-HHHHHHHHCSEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhh-hHHHHHhhCCEE
Confidence 45789999999999999999999998875443 555533 345666664 799999999999988 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC------CCCH-HHHHHHHHHHHHHHhhhccccc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL------AKSS-SVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------~~~~-~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
|+|+|++++.+ +.....|+..+... ...++|+++|+||+|+.+ .+.. .+....+.+..+
T Consensus 105 ilv~d~~~~~s-~~~~~~~~~~i~~~---~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~---------- 170 (199)
T 2p5s_A 105 LLLYDVTCEKS-FLNIREWVDMIEDA---AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG---------- 170 (199)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHH---C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT----------
T ss_pred EEEEECCChHH-HHHHHHHHHHHHHh---cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC----------
Confidence 99999998654 66777666555432 113489999999999962 1211 111222222111
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 171 ----------------------------~~~~~~SA~~g~g---v~el~~~l~~ 193 (199)
T 2p5s_A 171 ----------------------------ALFCETSAKDGSN---IVEAVLHLAR 193 (199)
T ss_dssp ----------------------------CEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------------CeEEEeeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=179.78 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=113.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--cccccccccee--eEEEEecCc--eEEEEECCCchh-hhhhhHHHhhhcCC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK--YFESCTSLKEN--VGNFTYEKK--NIKIVDLPGEDR-LRNKFFDQYKSSAK 81 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~~~~t~~~~--~~~~~~~~~--~~~i~D~~G~~~-~~~~~~~~~~~~~d 81 (211)
...+||+++|++|||||||+++|++.. +...+++++.. ...+.+++. .+.+|||+|++. +.. +...+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~-l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW-LHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH-HHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhh-HHHHHHhhCC
Confidence 345899999999999999999999643 34555555543 344667766 578899999987 444 5666788899
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccch
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++|+|||+++..+ +..+..|+..+...... .++|+++|+||+||...+.... ....+....+
T Consensus 114 ~~ilVydvt~~~s-f~~~~~~~~~l~~~~~~--~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-------------- 176 (211)
T 2g3y_A 114 AYLIVYSITDRAS-FEKASELRIQLRRARQT--EDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-------------- 176 (211)
T ss_dssp EEEEEEETTCHHH-HHHHHHHHHHHHTSGGG--TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT--------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHHhCC--CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC--------------
Confidence 9999999999655 88888777766543222 2499999999999976544321 1112222111
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 177 ------------------------~~~~e~SAk~g~~---v~elf~~l~~ 199 (211)
T 2g3y_A 177 ------------------------CKFIETSAAVQHN---VKELFEGIVR 199 (211)
T ss_dssp ------------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=177.96 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=117.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ ++.+... ..+..++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~i 98 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-ITTAYYRGAMGF 98 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-SGGGGGTTCSEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-hHHHhccCCCEE
Confidence 34589999999999999999999998875443 5555443 33455544 899999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+... +....+.+.++
T Consensus 99 i~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 158 (189)
T 2gf9_A 99 LLMYDIANQES-FAAVQDWATQIKTYS---WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG---------------- 158 (189)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccCCCHHHHHHHHHHcC----------------
Confidence 99999998654 777777776665421 2348999999999997654422 22222322222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 159 ----------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 181 (189)
T 2gf9_A 159 ----------------------FEFFEASAKENIN---VKQVFERLVD 181 (189)
T ss_dssp ----------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=181.85 Aligned_cols=192 Identities=25% Similarity=0.405 Sum_probs=131.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhc---
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSS--- 79 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~--- 79 (211)
...+.++|+++|++|||||||+++|.+..+.... |+++.. +....+.+|||||++.++. .+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~ 81 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRY-KLSDYLKTRAK 81 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTH-HHHHHHHHHGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHH-HHHHHHHhccc
Confidence 3567899999999999999999999988765432 332222 2445899999999999987 57777776
Q ss_pred -CCEEEEEEeCC-CchhhHHHHHHHHHHHHcCcCc-CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH------Hhh
Q psy1914 80 -AKGIVYVLDSS-TVQKTLRDVAESLYVILADPQV-QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL------VRR 150 (211)
Q Consensus 80 -~d~ii~v~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~------~~~ 150 (211)
++++++|+|++ ++.+ +.....++..++..... ...++|+++|+||+|+........+.+.+.+++.. ...
T Consensus 82 ~~~~~i~v~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKK-LTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL 160 (218)
T ss_dssp GEEEEEEEEETTSCTTC-CHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHH-HHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999998 5444 77777887777653221 12349999999999999887766555444433322 456
Q ss_pred hcccccccchhhcc-cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 151 TKSNQLEDTNDVAA-NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 151 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++..+.+.+.. ....++.. ..|.|++++.++.++.+|+.+++ ++++++||.+
T Consensus 161 ~~~Sa~~~~~~~~~~~~~~l~~~-~~f~~~~~~~~v~~~~~s~~~~~----i~~~~~~~~~ 216 (218)
T 1nrj_B 161 NEVERKINEEDYAENTLDVLQST-DGFKFANLEASVVAFEGSINKRK----ISQWREWIDE 216 (218)
T ss_dssp HC--------------CTTC-----CCCGGGSSSCEEEEECBTTTTB----CHHHHHHHHH
T ss_pred cccccccccccchhhhcccccCC-CCccccccCCceEEEeccccCCc----HHHHHHHHHh
Confidence 77888776654332 22233433 67888889999999999999885 9999999964
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=180.15 Aligned_cols=156 Identities=22% Similarity=0.334 Sum_probs=117.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...++|+++|++|||||||+++|++..+...+ ++++.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~i 96 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT-ITTAYYRGAMGI 96 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC-CCHHHHTTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHhccCCEE
Confidence 45689999999999999999999988875433 555543 445667764 799999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.......+....+.+...
T Consensus 97 i~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 155 (213)
T 3cph_A 97 ILVYDVTDERT-FTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEALAKELG----------------- 155 (213)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHT---TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-----------------
Confidence 99999998654 777777776665422 134899999999999543332222223322222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 156 ---------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 178 (213)
T 3cph_A 156 ---------------------IPFIESSAKNDDN---VNEIFFTLAK 178 (213)
T ss_dssp ---------------------CCEEECBTTTTBS---SHHHHHHHHH
T ss_pred ---------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 5689999999999 9999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-28 Score=182.70 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
...+||+++|++|||||||+++|+++.+...+ ||++..... +.+++. .+.+|||||++.+.. ++..+++++|++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-VRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-TGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-HHHHHcCCCeEEE
Confidence 45789999999999999999999999887665 666655432 445544 789999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHH-HHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 85 YVLDSSTVQKTLRD-VAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 85 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+|||++++.+ +.. ...|+..+... . .++|+++|+||+|+.+.
T Consensus 104 ~v~d~~~~~s-~~~~~~~~~~~i~~~--~--~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 104 LCFDISRPET-VDSALKKWRTEILDY--C--PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp EEEETTCTHH-HHHHHTHHHHHHHHH--C--TTSEEEEEEECGGGGGC
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEEChhhccc
Confidence 9999999665 766 45555555432 1 34999999999999753
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-28 Score=179.58 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=91.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++++|++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-LRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-TGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-HHHHhcCCCCEEEE
Confidence 5689999999999999999999998876654 55554443 4566664 789999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 86 VLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 86 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
|+|++++.+ +.... .|+..+... . .++|+++|+||+|+.+.
T Consensus 96 v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 96 CFSVVNPAS-FQNVKEEWVPELKEY--A--PNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEETTCHHH-HHHHHHTHHHHHHHH--S--TTCCEEEEEECTTSTTC
T ss_pred EEECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEEChhhccc
Confidence 999999665 76766 455544432 1 24999999999999754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=179.37 Aligned_cols=156 Identities=24% Similarity=0.279 Sum_probs=119.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ +|++... ..+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~v 84 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-ITSSYYRGSHGI 84 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-CCGGGGTTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH-HHHHhccCCCEE
Confidence 34689999999999999999999998876544 5555443 45667665 899999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+..
T Consensus 85 ilv~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 143 (206)
T 2bcg_Y 85 IIVYDVTDQES-FNGVKMWLQEIDRYA---TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN----------------- 143 (206)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-----------------
Confidence 99999999664 777777776665422 2348999999999998654322 1222222111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++||.+
T Consensus 144 ---------------------~~~~~~~Sa~~g~g---i~~l~~~l~~ 167 (206)
T 2bcg_Y 144 ---------------------KMPFLETSALDSTN---VEDAFLTMAR 167 (206)
T ss_dssp ---------------------TCCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999865
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=184.06 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=114.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|.++.+...+ ||++.... .+.+++. .+.+|||||++.+.. ++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-LRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-HHHhhccCCCEEE
Confidence 45689999999999999999999998876555 56655443 3556665 899999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH---------HHHHHHHHHHHHHHhhhccc
Q psy1914 85 YVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS---------SVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---------~~~~~~l~~~~~~~~~~~~~ 154 (211)
+|+|++++.+ +.... .|+..+.... +++|+++|+||+|+.+.... .+....+.+.++
T Consensus 86 lv~d~~~~~s-~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-------- 152 (212)
T 2j0v_A 86 LAFSLISKAS-YENVLKKWMPELRRFA----PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-------- 152 (212)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT--------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHhC----CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC--------
Confidence 9999999665 77766 4544443221 24999999999999764321 111111221111
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 153 -----------------------------~~~~~~~Sa~~g~g---i~~l~~~l~~ 176 (212)
T 2j0v_A 153 -----------------------------AAAYIECSSKTQQN---VKAVFDTAIK 176 (212)
T ss_dssp -----------------------------CSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------------------CceEEEccCCCCCC---HHHHHHHHHH
Confidence 03789999999999 9999999864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=181.34 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=104.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||++++.++.+...+ ||++.... .+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR-LRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTT-TGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-hHHhhccCCCEEE
Confidence 56799999999999999999999988876554 45443322 2334443 677999999999888 6888899999999
Q ss_pred EEEeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-----------HHHHHHHHHHHHHHhhhc
Q psy1914 85 YVLDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-----------SVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-----------~~~~~~l~~~~~~~~~~~ 152 (211)
+|+|++++.+ +..... |+..+... . .++|+++|+||+|+.+.... .+....+.+.++
T Consensus 85 ~v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 153 (182)
T 3bwd_D 85 LAFSLISKAS-YENVSKKWIPELKHY--A--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG------ 153 (182)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH--C--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC------
Confidence 9999998665 766663 44444322 1 24999999999999755321 111111111111
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 154 -------------------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 177 (182)
T 3bwd_D 154 -------------------------------APAYIECSSKSQEN---VKGVFDAAIR 177 (182)
T ss_dssp -------------------------------CSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 13789999999999 9999999865
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-28 Score=181.54 Aligned_cols=171 Identities=12% Similarity=0.114 Sum_probs=112.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-LRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT-TGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH-HHHHHhccCCEE
Confidence 356799999999999999999999988886555 45443333 3556665 566999999999988 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +......|...+.... .++|+++|+||+|+.......+.... .. . ......
T Consensus 106 i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~----~~---~------~~v~~~- 167 (204)
T 4gzl_A 106 LICFSLVSPAS-FENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKE----KK---L------TPITYP- 167 (204)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHH----TT---C------CCCCHH-
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhc----cc---c------ccccHH-
Confidence 99999999665 7777633444433221 34999999999999765432211110 00 0 000000
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+ .......++++|||++|+| +++++++|.+
T Consensus 168 ~~~~~----------~~~~~~~~~~~~SA~~g~g---i~~l~~~l~~ 201 (204)
T 4gzl_A 168 QGLAM----------AKEIGAVKYLECSALTQRG---LKTVFDEAIR 201 (204)
T ss_dssp HHHHH----------HHHTTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHH----------HHhcCCcEEEEeeCCCCCC---HHHHHHHHHH
Confidence 00000 0001114689999999999 9999999976
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=181.50 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR-LRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC----------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH-HHHHHhccCCEEE
Confidence 35689999999999999999999998876554 4554433 23566665 789999999999988 6888899999999
Q ss_pred EEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.... .|+..+... . .++|+++|+||+|+.......+.. .. .. ....+. .
T Consensus 111 ~v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~~~~~~~~---~~-~~---~~~v~~----~--- 171 (214)
T 2j1l_A 111 LCFDVTSPNS-FDNIFNRWYPEVNHF--C--KKVPIIVVGCKTDLRKDKSLVNKL---RR-NG---LEPVTY----H--- 171 (214)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH--C--SSCCEEEEEECGGGGSCHHHHHHH---HH-TT---CCCCCH----H---
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEEChhhhccchhhhhh---cc-cc---cCcccH----H---
Confidence 9999998665 77776 444444321 1 248999999999997653221111 00 00 000000 0
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+.. . .....+++|||++|+| +++++++|.+
T Consensus 172 ~~~~~~~---------~-~~~~~~~~~SA~~g~g---i~el~~~l~~ 205 (214)
T 2j1l_A 172 RGQEMAR---------S-VGAVAYLECSARLHDN---VHAVFQEAAE 205 (214)
T ss_dssp HHHHHHH---------H-TTCSEEEECBTTTTBS---HHHHHHHHHH
T ss_pred HHHHHHH---------h-cCCCEEEEecCCCCCC---HHHHHHHHHH
Confidence 0000000 0 0113789999999999 9999999865
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=179.42 Aligned_cols=156 Identities=20% Similarity=0.284 Sum_probs=112.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~ 101 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS-VTRSYYRGAAGA 101 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC-CCHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH-HHHHHhccCCEE
Confidence 45689999999999999999999988875544 555533 444666663 899999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+.... ....+.+.
T Consensus 102 i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------------------ 159 (200)
T 2o52_A 102 LLVYDITSRET-YNSLAAWLTDARTLA---SPNIVVILCGNKKDLDPEREVTFLEASRFAQE------------------ 159 (200)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHT---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH------------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECCCcccccccCHHHHHHHHHH------------------
Confidence 99999999665 777777777665422 13499999999999975544321 11112111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+++|||++|+| ++++++||.+
T Consensus 160 --------------------~~~~~~~~SA~~g~g---i~~l~~~l~~ 184 (200)
T 2o52_A 160 --------------------NELMFLETSALTGEN---VEEAFLKCAR 184 (200)
T ss_dssp --------------------TTCEEEEECTTTCTT---HHHHHHHHHH
T ss_pred --------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 116889999999999 9999999864
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=179.06 Aligned_cols=171 Identities=13% Similarity=0.214 Sum_probs=115.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...++||+++|.+|||||||+++|.++.+...+ ||++... ..+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDR-LRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTT-TGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHH-HHHHhcCCCCEE
Confidence 455789999999999999999999998876554 5555544 34666665 889999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +......|...+... . .++|+++|+||+|+....... +.+.+ +. ..... ..
T Consensus 101 i~v~d~~~~~s-~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~~~~~~---~~~~~-~~---~~~v~----~~--- 162 (201)
T 2gco_A 101 LMCFSIDSPDS-LENIPEKWTPEVKHF-C--PNVPIILVGNKKDLRQDEHTR---RELAK-MK---QEPVR----SE--- 162 (201)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH-S--TTCCEEEEEECGGGTTCHHHH---HHHHT-TT---CCCCC----HH---
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEEecHHhhcCccch---hhhcc-cc---cCcCC----HH---
Confidence 99999998654 767644444443321 1 249999999999997543211 11110 00 00000 00
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+.. . .....+++|||++|+| +++++++|.+
T Consensus 163 ~~~~~~~---------~-~~~~~~~~~SA~~g~g---i~~l~~~i~~ 196 (201)
T 2gco_A 163 EGRDMAN---------R-ISAFGYLECSAKTKEG---VREVFEMATR 196 (201)
T ss_dssp HHHHHHH---------H-TTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHHHH---------h-CCCcEEEEeeCCCCCC---HHHHHHHHHH
Confidence 0000000 0 0113789999999999 9999999875
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-28 Score=178.76 Aligned_cols=155 Identities=18% Similarity=0.170 Sum_probs=110.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc------------cccceeeEEE---EecCc--eEEEEECCCchhhhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC------------TSLKENVGNF---TYEKK--NIKIVDLPGEDRLRN 70 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~------------~t~~~~~~~~---~~~~~--~~~i~D~~G~~~~~~ 70 (211)
....+||+++|++|||||||++.+.+ .+...+ ||.+...... .+++. .+.+|||||++.+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 35678999999999999999977665 333322 3444333322 22333 799999999999998
Q ss_pred hhHHHhhhcCCEEEEEEeCCCc-----hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTV-----QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
++..+++++|++|+|+|++++ ...+..+..|+..+.. ...++|+++|+||+|+.+.....+..+.+.
T Consensus 90 -~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~----~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--- 161 (198)
T 3t1o_A 90 -SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL----TLDDVPIVIQVNKRDLPDALPVEMVRAVVD--- 161 (198)
T ss_dssp -HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC----CTTSSCEEEEEECTTSTTCCCHHHHHHHHC---
T ss_pred -HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc----ccCCCCEEEEEEchhcccccCHHHHHHHHH---
Confidence 789999999999999999853 2235555566555421 123499999999999987655444333221
Q ss_pred HHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcE-EEEEEeeecCCCccchHHHHHHHhh
Q psy1914 146 NLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQV-SFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.... ++++|||++|+| ++++++||.+
T Consensus 162 ------------------------------------~~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 188 (198)
T 3t1o_A 162 ------------------------------------PEGKFPVLEAVATEGKG---VFETLKEVSR 188 (198)
T ss_dssp ------------------------------------TTCCSCEEECBGGGTBT---HHHHHHHHHH
T ss_pred ------------------------------------hcCCceEEEEecCCCcC---HHHHHHHHHH
Confidence 0114 789999999999 9999999875
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=175.57 Aligned_cols=162 Identities=19% Similarity=0.230 Sum_probs=106.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEec-C--ceEEEEECCCchhhhhhhHHHhhhcC
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYE-K--KNIKIVDLPGEDRLRNKFFDQYKSSA 80 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~-~--~~~~i~D~~G~~~~~~~~~~~~~~~~ 80 (211)
...+.+||+++|++|||||||+++|+++.+...+ ++++. ....+.++ + ..+.+|||||++.+.. .+..+++.+
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~ 82 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-LGVAFYRGA 82 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------CCSTTC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-hhHHHhhcC
Confidence 3456789999999999999999999998875544 55544 33445555 2 2789999999999888 688889999
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcC-cCCCCCcEEEEEeCCCccCCCC-H-HHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQ-VQSSRVNILVCCNKQDQTLAKS-S-SVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
|++++|+|++++.+ +.....|+..+..... ....++|+++|+||+|+..... . .+....+.+.
T Consensus 83 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~------------- 148 (182)
T 1ky3_A 83 DCCVLVYDVTNASS-FENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS------------- 148 (182)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH-------------
T ss_pred CEEEEEEECCChHH-HHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh-------------
Confidence 99999999999654 7777777766654321 1123489999999999964321 1 1111122110
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| ++++++||.+
T Consensus 149 ------------------------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 174 (182)
T 1ky3_A 149 ------------------------LGDIPLFLTSAKNAIN---VDTAFEEIAR 174 (182)
T ss_dssp ------------------------TTSCCEEEEBTTTTBS---HHHHHHHHHH
T ss_pred ------------------------cCCCeEEEEecCCCCC---HHHHHHHHHH
Confidence 0126789999999999 9999999865
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=176.47 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=113.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-LRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-TGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-HHHHhccCCcEEE
Confidence 45689999999999999999999988876554 55544333 3556665 677999999999988 6788889999999
Q ss_pred EEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.... .|+..+... . .++|+++|+||+|+.+..... +.+.. . ...... ..
T Consensus 82 ~v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~~~~~---~~~~~-~---~~~~v~------~~- 142 (186)
T 1mh1_A 82 ICFSLVSPAS-FENVRAKWYPEVRHH--C--PNTPIILVGTKLDLRDDKDTI---EKLKE-K---KLTPIT------YP- 142 (186)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH--S--TTSCEEEEEECHHHHTCHHHH---HHHHH-T---TCCCCC------HH-
T ss_pred EEEECCChhh-HHHHHHHHHHHHHHh--C--CCCCEEEEeEcccccccchhh---hhhcc-c---ccccCC------HH-
Confidence 9999998655 66666 344444321 1 149999999999997543211 11110 0 000000 00
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+.. . ....++++|||++|+| +++++++|.+
T Consensus 143 ~~~~~~~---------~-~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 176 (186)
T 1mh1_A 143 QGLAMAK---------E-IGAVKYLECSALTQRG---LKTVFDEAIR 176 (186)
T ss_dssp HHHHHHH---------H-TTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHHHH---------h-cCCcEEEEecCCCccC---HHHHHHHHHH
Confidence 0000000 0 0113889999999999 9999999865
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=177.24 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=90.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
....+||+++|++|||||||+++|.++.+...+ ||.+.... .+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-VRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-TGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh-hHHhhcCCCcEE
Confidence 456789999999999999999999998886654 56554443 3555554 789999999999887 678889999999
Q ss_pred EEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 84 VYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
++|+|++++.+ +..+ ..|+..+... . +++|+++|+||+|+.+
T Consensus 83 i~v~d~~~~~s-~~~~~~~~~~~i~~~--~--~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 83 LICFDISRPET-LDSVLKKWKGEIQEF--C--PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH--C--TTCEEEEEEECGGGGG
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHH--C--CCCCEEEEEEcchhhc
Confidence 99999999655 7666 3444444321 1 2499999999999974
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-28 Score=181.39 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--cccccc-cccc--eeeEEEEecCc----eEEEEECCCchhhhhhhHHHhhhc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFESC-TSLK--ENVGNFTYEKK----NIKIVDLPGEDRLRNKFFDQYKSS 79 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~~~-~t~~--~~~~~~~~~~~----~~~i~D~~G~~~~~~~~~~~~~~~ 79 (211)
...+||+++|++|||||||+++|+++ .+...+ +|++ .....+.+++. .+.+|||||++.+.. .+..++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ 96 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKE-QISQYWNG 96 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHH-HHSTTCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHH-HHHHHHhh
Confidence 34689999999999999999999988 665444 5655 34555777753 799999999999988 68889999
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC-CCCH-HHHHHHHHHHHHHHhhhcccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL-AKSS-SVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+|++|+|+|++++.+ +.....|+..+.........++|+++|+||+|+.. .+.. .+....+.+.++
T Consensus 97 ~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~----------- 164 (208)
T 2yc2_C 97 VYYAILVFDVSSMES-FESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT----------- 164 (208)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-----------
T ss_pred CcEEEEEEECCCHHH-HHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-----------
Confidence 999999999999664 77888777777653211012499999999999976 3332 111222222111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeec-CCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLD-SASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~t-g~g~~~i~~l~~~i~~ 210 (211)
+++++|||++ |+| ++++++||.+
T Consensus 165 ---------------------------~~~~~~Sa~~~~~g---i~~l~~~i~~ 188 (208)
T 2yc2_C 165 ---------------------------LDFFDVSANPPGKD---ADAPFLSIAT 188 (208)
T ss_dssp ---------------------------CEEEECCC----------CHHHHHHHH
T ss_pred ---------------------------CEEEEeccCCCCcC---HHHHHHHHHH
Confidence 6889999999 999 9999999865
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=179.30 Aligned_cols=162 Identities=18% Similarity=0.227 Sum_probs=116.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
...+.+||+++|++|||||||+++|++..+...+ +|++... ..+.+++. .+.+|||||++.+.. .+..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d 82 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-LGVAFYRGAD 82 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-SCCGGGTTCS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-hHHHHHhCCc
Confidence 3456799999999999999999999998876544 5555443 34555554 789999999999887 6788889999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCc-CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQV-QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++|+|+|++++.+ +.....|+..+...... ...++|+++|+||+|+.......+....+...
T Consensus 83 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 145 (207)
T 1vg8_A 83 CCVLVFDVTAPNT-FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS---------------- 145 (207)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh----------------
Confidence 9999999998654 66666666665432110 11238999999999997433222222222110
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|+| ++++++||.+
T Consensus 146 ---------------------~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 171 (207)
T 1vg8_A 146 ---------------------KNNIPYFETSAKEAIN---VEQAFQTIAR 171 (207)
T ss_dssp ---------------------TTSCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------cCCceEEEEeCCCCCC---HHHHHHHHHH
Confidence 0126789999999999 9999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=178.14 Aligned_cols=170 Identities=15% Similarity=0.208 Sum_probs=111.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..++||+++|++|||||||+++|+++.+...+ ||++... ..+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-LRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-TGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-HHHhhcCCCCEEE
Confidence 45689999999999999999999998876555 5555444 33566664 789999999999887 6788889999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +......|...+... . +++|+++|+||+|+....... +.+.+ +. ..... ....
T Consensus 102 ~v~d~~~~~s-~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~~~~~~---~~~~~-~~---~~~v~----~~~~-- 164 (207)
T 2fv8_A 102 MCFSVDSPDS-LENIPEKWVPEVKHF-C--PNVPIILVANKKDLRSDEHVR---TELAR-MK---QEPVR----TDDG-- 164 (207)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH-S--TTCCEEEEEECGGGGGCHHHH---HHHHH-TT---CCCCC----HHHH--
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEEEchhhhccccch---hhhhh-cc---cCCCC----HHHH--
Confidence 9999998654 666644333333321 1 248999999999997543211 11111 00 00000 0000
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.. . .....+++|||++|+| +++++++|.+
T Consensus 165 -~~~~~---------~-~~~~~~~~~SA~~g~g---i~el~~~l~~ 196 (207)
T 2fv8_A 165 -RAMAV---------R-IQAYDYLECSAKTKEG---VREVFETATR 196 (207)
T ss_dssp -HHHHH---------H-TTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -HHHHH---------h-cCCCEEEEeeCCCCCC---HHHHHHHHHH
Confidence 00000 0 0113789999999999 9999999875
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=179.87 Aligned_cols=156 Identities=21% Similarity=0.273 Sum_probs=113.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~v 89 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA-ITSAYYRGAVGA 89 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC-CCGGGTTTCCEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh-hHHHHhccCCEE
Confidence 44589999999999999999999998876544 555543 445667764 889999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+...+... +....+.+..
T Consensus 90 ilV~D~~~~~s-~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------- 148 (223)
T 3cpj_B 90 LIVYDISKSSS-YENCNHWLSELRENA---DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN----------------- 148 (223)
T ss_dssp EEEEC-CCHHH-HHHHHHHHHHHHHHC---C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEeCCCHHH-HHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccCHHHHHHHHHHc-----------------
Confidence 99999999655 777777777665421 2348999999999997654332 1111121111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++||.+
T Consensus 149 ---------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 172 (223)
T 3cpj_B 149 ---------------------QLLFTETSALNSEN---VDKAFEELIN 172 (223)
T ss_dssp ---------------------TCEEEECCCC-CCC---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999864
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=181.29 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=113.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe--cC---ceEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY--EK---KNIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~--~~---~~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
....+||+++|.+|||||||+++|+++.+...+ +|.+.......+ .+ ..+.+|||||++.+.. ++..++.++|
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d 86 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV-LKDVYYIGAS 86 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC-CCHHHHTTCS
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch-HHHHHhhcCC
Confidence 456789999999999999999999988876554 566555544333 22 2699999999999887 6888899999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+....... .......
T Consensus 87 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~--------------- 145 (218)
T 4djt_A 87 GAILFFDVTSRIT-CQNLARWVKEFQAVV---GNEAPIVVCANKIDIKNRQKISKK--LVMEVLK--------------- 145 (218)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHHHHHHH---CSSSCEEEEEECTTCC----CCHH--HHHHHTT---------------
T ss_pred EEEEEEeCCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHH--HHHHHHH---------------
Confidence 9999999999654 666666666654321 223899999999999765332211 1111010
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++|||++|+| +++++++|.+
T Consensus 146 --------------------~~~~~~~~~Sa~~g~g---v~~l~~~l~~ 171 (218)
T 4djt_A 146 --------------------GKNYEYFEISAKTAHN---FGLPFLHLAR 171 (218)
T ss_dssp --------------------TCCCEEEEEBTTTTBT---TTHHHHHHHH
T ss_pred --------------------HcCCcEEEEecCCCCC---HHHHHHHHHH
Confidence 1226799999999999 9999999875
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=177.54 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=90.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
....+||+++|++|||||||+++|+++.+...+ ||++.... .+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-VRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT-TGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH-HHHhhccCCCEE
Confidence 345789999999999999999999998886654 56554443 3555554 789999999999887 678889999999
Q ss_pred EEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 84 VYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
|+|+|++++.+ +..+ ..|+..+... . .++|+++|+||+|+.+
T Consensus 104 ilv~D~~~~~s-~~~~~~~~~~~i~~~--~--~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 104 LICFDISRPET-LDSVLKKWKGEIQEF--C--PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH--C--TTCEEEEEEECGGGGG
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHH--C--CCCCEEEEEechhhcc
Confidence 99999999655 7666 4454444321 1 2499999999999974
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=181.91 Aligned_cols=156 Identities=17% Similarity=0.265 Sum_probs=117.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCC
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
.....+||+++|.+|||||||+++|+.+.+...+ ++.+..... +.+++. .+.+|||||++.+.. ++..+++++|
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~ 89 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG-LRDGYYIQAQ 89 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC-CCHHHHTTCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH-HHHHHHhcCC
Confidence 3456789999999999999999997776665543 666555444 344443 899999999999988 6888999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++++|+|++++.+ +.....|+..+.... .++|+++|+||+|+.+.....+... +.+..
T Consensus 90 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~---------------- 147 (221)
T 3gj0_A 90 CAIIMFDVTSRVT-YKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIV-FHRKK---------------- 147 (221)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHHHHHHS----TTCCEEEEEECTTSSSCSSCGGGCC-HHHHH----------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECCccccccccHHHHH-HHHHc----------------
Confidence 9999999999654 777777777776531 2489999999999976543221111 11111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| ++++++||.+
T Consensus 148 ----------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 171 (221)
T 3gj0_A 148 ----------------------NLQYYDISAKSNYN---FEKPFLWLAR 171 (221)
T ss_dssp ----------------------TCEEEECBGGGTBT---TTHHHHHHHH
T ss_pred ----------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=172.01 Aligned_cols=157 Identities=16% Similarity=0.130 Sum_probs=108.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--ccccccccccee--eEEEEecCc--eEEEEECCCchh-hhhhhHHHhhhcCC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFESCTSLKEN--VGNFTYEKK--NIKIVDLPGEDR-LRNKFFDQYKSSAK 81 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~~~~t~~~~--~~~~~~~~~--~~~i~D~~G~~~-~~~~~~~~~~~~~d 81 (211)
...+||+++|++|||||||+++|++. .+...+++++.. ...+.+++. .+.+|||+|+.. ++. +...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~-~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW-LHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CT-TGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhh-HHHhhcccCC
Confidence 45689999999999999999999963 344444555443 344677776 667899999876 333 5566788899
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccch
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++++|||+++..+ +.....|+..+...... .++|+++|+||+|+...+..... ...+...
T Consensus 83 ~~i~v~dv~~~~s-~~~~~~~~~~l~~~~~~--~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~---------------- 143 (192)
T 2cjw_A 83 AYLIVYSITDRAS-FEKASELRIQLRRARQT--EDIPIILVGNKSDLVRXREVSVSEGRAXAVV---------------- 143 (192)
T ss_dssp EEEEEEETTCHHH-HHHHHHHHHHHHHHTTT--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhhCC--CCCeEEEEEechhhhccccccHHHHHHHHHH----------------
Confidence 9999999999655 77777776655432111 24899999999999754433211 1111111
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| +++++++|.+
T Consensus 144 ----------------------~~~~~~e~SA~~g~~---v~~lf~~l~~ 168 (192)
T 2cjw_A 144 ----------------------FDXKFIETSAAVQHN---VKELFEGIVR 168 (192)
T ss_dssp ----------------------TTCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------hCCceEEeccccCCC---HHHHHHHHHH
Confidence 115789999999999 9999999864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-27 Score=169.98 Aligned_cols=149 Identities=20% Similarity=0.288 Sum_probs=103.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-ccccccc--ceeeEEEEecCceEEEEECCCchhhhh-----hhHHHhhh--cC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRN-----KFFDQYKS--SA 80 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~--~~ 80 (211)
.++|+++|++|||||||+++|++..+ ...+|++ ......+.+++..+.+|||||++.+.. .+...++. ++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 57999999999999999999998765 3334533 344556777778999999999987641 13455654 79
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
+++++|+|+++.+ ....|+..+.. .++|+++|+||+|+...+......+.+.+.++
T Consensus 83 ~~~i~v~D~~~~~----~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------- 138 (165)
T 2wji_A 83 DLVVNIVDATALE----RNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-------------- 138 (165)
T ss_dssp SEEEEEEETTCHH----HHHHHHHHHHH------TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------------
T ss_pred CEEEEEecCCchh----HhHHHHHHHHh------cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------------
Confidence 9999999998743 23345444433 13899999999998644322111222322222
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++|||++|+| +++++++|.+
T Consensus 139 ------------------------~~~~~~SA~~~~~---v~~l~~~l~~ 161 (165)
T 2wji_A 139 ------------------------VKVVPLSAAKKMG---IEELKKAISI 161 (165)
T ss_dssp ------------------------SCEEECBGGGTBS---HHHHHHHHHH
T ss_pred ------------------------CCEEEEEcCCCCC---HHHHHHHHHH
Confidence 5679999999999 9999999864
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=169.05 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=113.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccc--ceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSL--KENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+.++|+++|++|||||||+++|+++.+.... +++ ......+.+++..+.+|||||++.+.. ++..++..+|++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 82 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT-MRARGAQVTDIV 82 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC-SCCSSCCCCCEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH-HHHHHHhhCCEE
Confidence 4567899999999999999999999998875443 333 344456778888999999999999887 577778889999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++. ..+..+.+..+.. .++|+++|+||+|+.... .......+ .....
T Consensus 83 i~v~d~~~~~--~~~~~~~l~~~~~------~~~p~ilv~nK~Dl~~~~-~~~~~~~~----~~~~~------------- 136 (178)
T 2lkc_A 83 ILVVAADDGV--MPQTVEAINHAKA------ANVPIIVAINKMDKPEAN-PDRVMQEL----MEYNL------------- 136 (178)
T ss_dssp EEEEETTCCC--CHHHHHHHHHHGG------GSCCEEEEEETTTSSCSC-HHHHHHHH----TTTTC-------------
T ss_pred EEEEECCCCC--cHHHHHHHHHHHh------CCCCEEEEEECccCCcCC-HHHHHHHH----HhcCc-------------
Confidence 9999998743 2333334433321 238999999999997642 22222111 10000
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ .......+++++|||++|+| ++++++||.+
T Consensus 137 ----~---------~~~~~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 167 (178)
T 2lkc_A 137 ----V---------PEEWGGDTIFCKLSAKTKEG---LDHLLEMILL 167 (178)
T ss_dssp ----C---------BTTTTSSEEEEECCSSSSHH---HHHHHHHHHH
T ss_pred ----C---------hhHcCCcccEEEEecCCCCC---HHHHHHHHHH
Confidence 0 00112237899999999999 9999999875
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=169.82 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=108.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEE--EEec-C--ceEEEEECCCchhhhhhhH--HHhhhcC
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGN--FTYE-K--KNIKIVDLPGEDRLRNKFF--DQYKSSA 80 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~--~~~~-~--~~~~i~D~~G~~~~~~~~~--~~~~~~~ 80 (211)
..+.+||+++|++|||||||++++.+........+....... ..+. + ..+.+|||||++.+....| ..+++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 457899999999999999999988875433322222222222 2332 2 3899999999999877333 7889999
Q ss_pred CEEEEEEeCCCc-hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH-HHHhhhccccccc
Q psy1914 81 KGIVYVLDSSTV-QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL-NLVRRTKSNQLED 158 (211)
Q Consensus 81 d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 158 (211)
|++|+|+|+++. ...+.....|+...... ..++|+++|+||+|+.+..........+.... .......
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~------ 166 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLHITVSKAYKV----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG------ 166 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHHHHhc----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh------
Confidence 999999999985 12355566666655321 13499999999999975432211111111111 0000000
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+.+++|||++ +| +++++++|.+
T Consensus 167 ---------------------~~~~~~~~~e~Sa~~-~~---v~~~f~~l~~ 193 (196)
T 3llu_A 167 ---------------------LEKLHLSFYLTSIYD-HS---IFEAFSKVVQ 193 (196)
T ss_dssp ---------------------CTTSCEEEEEECTTS-TH---HHHHHHHHHH
T ss_pred ---------------------hhcCCcceEEEEech-hh---HHHHHHHHHH
Confidence 001237899999999 99 9999998865
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=171.65 Aligned_cols=162 Identities=15% Similarity=0.210 Sum_probs=109.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC--ccccc-ccccceeeEEEEe-------cCceEEEEECCCchhhhhhhHHHhhhcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS--KYFES-CTSLKENVGNFTY-------EKKNIKIVDLPGEDRLRNKFFDQYKSSA 80 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~--~~~~~-~~t~~~~~~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 80 (211)
++||+++|++|||||||+++|++. .+... .+|++.......+ ....+.+|||+|++.+.. ++..+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~ 80 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS-THPHFMTQR 80 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT-TSHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH-hhHHHccCC
Confidence 589999999999999999999985 34433 4677766555433 233899999999999988 688889999
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
+++++|+|++++.+++.....|+..+.... .+.|+++|+||+|+.+.+..........+.+. .
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~-------- 143 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKARA----SSSPVILVGTHLDVSDEKQRKACMSKITKELL-----N-------- 143 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHHC----TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT-----T--------
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhhC----CCCcEEEEEECCCcccchhhHHHHHHHHHHHH-----H--------
Confidence 999999999987555777778877765421 23899999999999754322211111111110 0
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCC-CccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSA-SEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~-g~~~i~~l~~~i~~ 210 (211)
.. .+.....++++||++|. | +++|++.|.+
T Consensus 144 ----------~~-------~~~~~~~~~~~Sa~~~~~~---~~~l~~~i~~ 174 (184)
T 2zej_A 144 ----------KR-------GFPAIRDYHFVNATEESDA---LAKLRKTIIN 174 (184)
T ss_dssp ----------CT-------TSCEEEEEEECCTTSCCHH---HHHHHHHHHH
T ss_pred ----------hc-------CCcchhheEEEecccCchh---HHHHHHHHHH
Confidence 00 01112458999999996 9 9999988864
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-28 Score=182.92 Aligned_cols=156 Identities=26% Similarity=0.309 Sum_probs=110.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc--eeeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ ++++ .....+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~ 109 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGI 109 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC-CSCC--CCCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH-HHHHHhhcCCEE
Confidence 34589999999999999999999988876544 4444 44555677764 799999999999887 678888999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+.... ....+.+.
T Consensus 110 i~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~------------------ 167 (199)
T 3l0i_B 110 IVVYDVTDQES-FNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTTKKVVDYTTAKEFADS------------------ 167 (199)
T ss_dssp EECC-CCCSHH-HHHHHHHHHHHHSCC----CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT------------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhc---cCCCCEEEEEECccCCccccCCHHHHHHHHHH------------------
Confidence 99999999665 888888777775432 23499999999999975543210 11111111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| ++++++||.+
T Consensus 168 --------------------~~~~~~~vSA~~g~g---v~~l~~~l~~ 192 (199)
T 3l0i_B 168 --------------------LGIPFLETSAKNATN---VEQSFMTMAA 192 (199)
T ss_dssp --------------------TTCCBCCCCC---HH---HHHHHHHHTT
T ss_pred --------------------cCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 125678899999999 9999999975
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=164.72 Aligned_cols=155 Identities=16% Similarity=0.191 Sum_probs=107.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEE-EEecCceEEEEECCC----------chhhhhhhHHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGN-FTYEKKNIKIVDLPG----------EDRLRNKFFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~ 77 (211)
...+||+++|++|||||||+++|++.......++.+..... ....+..+.+||||| ++.+.. ++..++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~~~~ 99 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKR-LVEDYF 99 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHH-HHHHHH
Confidence 45689999999999999999999998754444444433222 222345789999999 556666 567777
Q ss_pred hcC---CEEEEEEeCCCchhh-HHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcc
Q psy1914 78 SSA---KGIVYVLDSSTVQKT-LRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 78 ~~~---d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 153 (211)
+.+ +++++|+|+++.... ......++... ++|+++|+||+|+.+........+.+.+.+..
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~------ 164 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK------ 164 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS------
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhh------
Confidence 665 999999999874331 22222332221 38999999999998665554444444332220
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++|||++|+| ++++++||.+
T Consensus 165 ----------------------------~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 190 (195)
T 3pqc_A 165 ----------------------------YGEYTIIPTSSVTGEG---ISELLDLIST 190 (195)
T ss_dssp ----------------------------SCCSCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------------cCCCceEEEecCCCCC---HHHHHHHHHH
Confidence 1125789999999999 9999999975
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=164.28 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=104.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCceEEEEECCC----------chhhhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKKNIKIVDLPG----------EDRLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~ 75 (211)
...++|+++|++|||||||+++|+++.+...+ ++.+. ....+.++ ..+.+||||| ++.+.. ++..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~-~~~~ 98 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGR-MIET 98 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHH-HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHH-HHHH
Confidence 45789999999999999999999988753332 33322 22233443 4799999999 667776 6777
Q ss_pred hhhcC---CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy1914 76 YKSSA---KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 76 ~~~~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
+++.+ |++++|+|++++.+ .... .+...+.. .++|+++|+||+|+.+........+.+.+.+..
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~-~~~~--~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~----- 165 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPS-NDDV--QMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI----- 165 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCC-HHHH--HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-----
T ss_pred HHhhhhcCCEEEEEEECCCCCC-HHHH--HHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-----
Confidence 77766 99999999988544 2221 11222221 238999999999998766554433444332220
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| ++++++||.+
T Consensus 166 -----------------------------~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 191 (195)
T 1svi_A 166 -----------------------------DPEDELILFSSETKKG---KDEAWGAIKK 191 (195)
T ss_dssp -----------------------------CTTSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------------------cCCCceEEEEccCCCC---HHHHHHHHHH
Confidence 1226889999999999 9999999875
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-28 Score=180.95 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=112.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-LRPLSYPQTDVFL 106 (204)
Confidence 46799999999999999999999988876554 44443332 2444444 677999999999988 6888899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +......|...+.... .++|+++|+||+|+.+.....+...... ....... .
T Consensus 107 lv~D~~~~~s-~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~v~~~------------~ 168 (204)
T 3th5_A 107 ICFSLVSPAS-FENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKK--LTPITYP------------Q 168 (204)
Confidence 9999998655 6666533333333211 1489999999999975543221111100 0000000 0
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
... +.+.....++++|||++|+| +++++++|.+
T Consensus 169 ~~~----------~~~~~~~~~~~~vSA~~g~g---i~~l~~~l~~ 201 (204)
T 3th5_A 169 GLA----------MAKEIGAVKYLECSALTQRG---LKTVFDEAIR 201 (204)
Confidence 000 00001113789999999999 9999999875
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-25 Score=167.06 Aligned_cols=160 Identities=23% Similarity=0.299 Sum_probs=106.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc-ccc--ccceeeEEEEecCceEEEEECCCc------hh----hhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE-SCT--SLKENVGNFTYEKKNIKIVDLPGE------DR----LRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~D~~G~------~~----~~~~~~~~ 75 (211)
...++|+++|++|||||||+++|+++.+.. ..+ |.......+.+++..+.+|||||+ +. +.. +..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~--~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT--ITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH--HHH
Confidence 457899999999999999999999887642 222 334455556667779999999999 33 222 344
Q ss_pred hhhcCCEEEEEEeCCCchhh-HHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKT-LRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKS 153 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~ 153 (211)
++..+|++++|+|++++.+. ......++..+... . .++|+++|+||+|+......... ...+.+....
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~------ 174 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--F--SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN------ 174 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C---CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH------
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--h--cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh------
Confidence 56778999999999985441 12233444444332 1 23899999999999866543322 1122211110
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+.+++|||++|+| +++++++|.+
T Consensus 175 ---------------------------~~~~~~~~~~SA~~g~g---i~~l~~~l~~ 201 (228)
T 2qu8_A 175 ---------------------------VKNPIKFSSFSTLTGVG---VEQAKITACE 201 (228)
T ss_dssp ---------------------------CCSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------------cCCCceEEEEecccCCC---HHHHHHHHHH
Confidence 01126889999999999 9999999875
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-26 Score=175.54 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=108.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccccccc--eeeEEEEecCceEEEEECCCchhhhh---------hhHHHhh--
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN---------KFFDQYK-- 77 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~-- 77 (211)
.+|+++|++|||||||+|+|++... ...+|+++ .....+.+++..+.+|||||+..+.. .+...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 5899999999999999999998764 34445444 45666788888999999999976653 1455566
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++|++++|+|++++++ ...+...+ .. .++|+++|+||+|+............+.+.++
T Consensus 82 ~~~d~vi~VvDas~~~~----~~~l~~~l-~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg----------- 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLER----HLYLTSQL-FE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG----------- 140 (256)
T ss_dssp SCCSEEEEEEEGGGHHH----HHHHHHHH-TT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-----------
T ss_pred CCCCEEEEEeeCCCchh----HHHHHHHH-HH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-----------
Confidence 78999999999988443 22222222 22 23899999999999765443322333443333
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
++++++||++|+| +++++++|.++
T Consensus 141 ---------------------------~~vi~~SA~~g~g---i~el~~~i~~~ 164 (256)
T 3iby_A 141 ---------------------------CSVIPIQAHKNIG---IPALQQSLLHC 164 (256)
T ss_dssp ---------------------------SCEEECBGGGTBS---HHHHHHHHHTC
T ss_pred ---------------------------CCEEEEECCCCCC---HHHHHHHHHhh
Confidence 6789999999999 99999999763
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=166.24 Aligned_cols=151 Identities=21% Similarity=0.281 Sum_probs=108.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccccc--eeeEEEEecCceEEEEECCCchhhhh-----hhHHHhhh--
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN-----KFFDQYKS-- 78 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~-- 78 (211)
.+.++|+++|++|||||||+++|++..+ ...+|+++ .....+.+++..+.+|||||++.+.. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 3568999999999999999999998664 33345433 44556777788999999999987631 24555664
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.++++++|+|+++ +.....|+..+.. .+.|+++|+||+|+............+.+.++
T Consensus 85 ~~~~~i~v~d~~~----~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------ 142 (188)
T 2wjg_A 85 KPDLVVNIVDATA----LERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEKILG------------ 142 (188)
T ss_dssp CCSEEEEEEEGGG----HHHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT------------
T ss_pred CCCEEEEEecchh----HHHHHHHHHHHHh------cCCCEEEEEEhhhccccccchHHHHHHHHHhC------------
Confidence 4999999999976 3444555555543 23899999999999654332212222332222
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 143 --------------------------~~~~~~Sa~~~~~---v~~l~~~i~~ 165 (188)
T 2wjg_A 143 --------------------------VKVVPLSAAKKMG---IEELKKAISI 165 (188)
T ss_dssp --------------------------SCEEECBGGGTBS---HHHHHHHHHH
T ss_pred --------------------------CCeEEEEecCCCC---HHHHHHHHHH
Confidence 5779999999999 9999999865
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=166.24 Aligned_cols=162 Identities=16% Similarity=0.221 Sum_probs=107.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccccceeeEEEEe---cCceEEEEECCCc----------hhhhhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY---FESCTSLKENVGNFTY---EKKNIKIVDLPGE----------DRLRNKF 72 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~----------~~~~~~~ 72 (211)
...++|+++|.+|||||||+|+|++... ....+.+........+ ++..+.+|||||+ +.+.. +
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ-L 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH-H
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH-H
Confidence 4578999999999999999999998862 2333333333333333 3459999999995 44444 5
Q ss_pred HHHhhhc---CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHh
Q psy1914 73 FDQYKSS---AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149 (211)
Q Consensus 73 ~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 149 (211)
...+++. +|++++|+|+++... .....+...+.. .++|+++|+||+|+..........+.+.+.+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~---~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLT---ELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCC---HHHHHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCC---HHHHHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 6666665 778999999987433 222223333332 23899999999999865544433444443333210
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
... .....++++|||++|+| +++++++|.+
T Consensus 178 ~~~----------------------------~~~~~~~~~~SA~~g~g---v~~l~~~l~~ 207 (223)
T 4dhe_A 178 DAG----------------------------YAGKLTVQLFSALKRTG---LDDAHALIES 207 (223)
T ss_dssp HHT----------------------------CCSCEEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred hcc----------------------------cCCCCeEEEeecCCCcC---HHHHHHHHHH
Confidence 000 01337899999999999 9999999975
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-25 Score=174.64 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc-ccccccccceeeEEEEec-CceEEEEECCCchhhhh-----hhHHHhhh--cCC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK-YFESCTSLKENVGNFTYE-KKNIKIVDLPGEDRLRN-----KFFDQYKS--SAK 81 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~-~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-----~~~~~~~~--~~d 81 (211)
.++|+++|++|||||||+|+|++.. +...+|.++.......++ +..+.+|||||++.+.. .+...|+. ++|
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 82 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRAD 82 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCC
Confidence 5799999999999999999999865 455566444433333333 66899999999987641 24556665 599
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++++|+|+++.++ ...++..+.. .++|+++|+||+|+............+.+.++
T Consensus 83 ~vi~V~D~t~~e~----~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------------- 137 (272)
T 3b1v_A 83 SILNVVDATNLER----NLYLTTQLIE------TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------------- 137 (272)
T ss_dssp EEEEEEEGGGHHH----HHHHHHHHHH------TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT---------------
T ss_pred EEEEEecCCchHh----HHHHHHHHHh------cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC---------------
Confidence 9999999987443 2334344432 23899999999999654332222233333333
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 138 -----------------------~~vi~~SA~~g~g---i~el~~~i~~ 160 (272)
T 3b1v_A 138 -----------------------VPVVATSALKQTG---VDQVVKKAAH 160 (272)
T ss_dssp -----------------------SCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CCEEEEEccCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999875
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=175.88 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccc--cceeeEEEEecCceEEEEECCCchhhhh---------hhHHHhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESCTS--LKENVGNFTYEKKNIKIVDLPGEDRLRN---------KFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~ 77 (211)
++++|+++|++|||||||+|+|++..+ ...+|+ .......+.+++..+.+|||||+..+.. .+...++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999998775 233443 3345556777778999999999876551 1233343
Q ss_pred --hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 78 --SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 78 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
+.+|++++|+|+++.+. . ..+...+.. .++|+++|+||+|+..........+.+.+.++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~-~---~~~~~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------- 142 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLER-N---LYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------- 142 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHH-H---HHHHHHHHH------HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT---------
T ss_pred hhcCCCEEEEEecCCChHH-H---HHHHHHHHh------cCCCEEEEEECccchhhhhHHHHHHHHHHhcC---------
Confidence 68999999999987443 2 222222221 12899999999999755443222333443333
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 143 -----------------------------~~~i~~SA~~g~g---i~el~~~i~~ 165 (274)
T 3i8s_A 143 -----------------------------CPVIPLVSTRGRG---IEALKLAIDR 165 (274)
T ss_dssp -----------------------------SCEEECCCGGGHH---HHHHHHHHHT
T ss_pred -----------------------------CCEEEEEcCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999975
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-25 Score=173.00 Aligned_cols=151 Identities=25% Similarity=0.340 Sum_probs=108.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccccc--eeeEEEEecCceEEEEECCCchhhhh-----hhHHHhh--h
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN-----KFFDQYK--S 78 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~--~ 78 (211)
.+.++|+++|++|||||||+|+|++..+ ...+|.++ .....+..++..+.+|||||+..+.. .+...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 4568999999999999999999998775 34445443 34445666677999999999976643 1234454 4
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|+++.++. ..++..+.. .++|+++|+||+|+...+........+.+.++
T Consensus 83 ~~d~ii~V~D~t~~~~~----~~~~~~l~~------~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg------------ 140 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS----LYLLLEILE------MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG------------ 140 (258)
T ss_dssp CCSEEEEEEETTSCHHH----HHHHHHHHT------TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC------------
T ss_pred CCCEEEEEeCCCchhhH----HHHHHHHHh------cCCCEEEEEECcCCCCccchHHHHHHHHHHcC------------
Confidence 79999999999886542 234444432 23899999999999654332222233333333
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 141 --------------------------~~vi~~SA~~g~g---i~el~~~i~~ 163 (258)
T 3a1s_A 141 --------------------------IPVVFTSSVTGEG---LEELKEKIVE 163 (258)
T ss_dssp --------------------------SCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------------CCEEEEEeeCCcC---HHHHHHHHHH
Confidence 6789999999999 9999999864
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-25 Score=158.56 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc--cccccc--ceeeEEEEecCceEEEEECCCchh-------hhhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSL--KENVGNFTYEKKNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
+||+++|++|||||||++++.++.+. ...+++ ......+.+++..+.+|||||+.. +.. .+..+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQE-KVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHH-HHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHH-HHHHHHHhC
Confidence 58999999999999999999987743 333333 334455677778999999999876 344 466678899
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
|++++|+|++++.+.. ..++...+.. .++|+++|+||+|+.+... .+....
T Consensus 81 ~~~i~v~d~~~~~~~~---~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~----------~~~~~~----------- 131 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQA---DYEVAEYLRR-----KGKPVILVATKVDDPKHEL----------YLGPLY----------- 131 (161)
T ss_dssp SEEEEEEESSSCCCHH---HHHHHHHHHH-----HTCCEEEEEECCCSGGGGG----------GCGGGG-----------
T ss_pred CEEEEEEECCCcccHh---HHHHHHHHHh-----cCCCEEEEEECcccccchH----------hHHHHH-----------
Confidence 9999999998853322 2333333322 2289999999999975410 000000
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++. -.++++|||++|+| +++++++|.+
T Consensus 132 -------------------~~~-~~~~~~~Sa~~~~g---v~~l~~~l~~ 158 (161)
T 2dyk_A 132 -------------------GLG-FGDPIPTSSEHARG---LEELLEAIWE 158 (161)
T ss_dssp -------------------GGS-SCSCEECBTTTTBS---HHHHHHHHHH
T ss_pred -------------------hCC-CCCeEEEecccCCC---hHHHHHHHHH
Confidence 000 02578999999999 9999999875
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=163.15 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=101.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCC-----------chhhhhhhHHHhhhc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPG-----------EDRLRNKFFDQYKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~~ 79 (211)
+||+++|++|||||||+++|+++.+...+ |+++.....+.++ .+.+||||| ++.+.. .+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKD-EIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHH-HHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHH-HHHHHHHh
Confidence 68999999999999999999998875433 5555555555555 799999999 566666 56667665
Q ss_pred -CCEEEEEEeCCCchhhHHHHHHHHHH---------HHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHh
Q psy1914 80 -AKGIVYVLDSSTVQKTLRDVAESLYV---------ILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149 (211)
Q Consensus 80 -~d~ii~v~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 149 (211)
++++++|+++.+..+ +......|.. +... ....++|+++|+||+|+.... .+..+.+.+.++. +
T Consensus 79 ~~~~~~~v~~v~d~~s-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~-~ 152 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKA-APEIIKRWEKRGEIPIDVEFYQF--LRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEV-P 152 (190)
T ss_dssp HGGGCCEEEEEEETTH-HHHHHHHHHHTTCCCHHHHHHHH--HHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTC-C
T ss_pred hhccCCEEEEEEcchh-hhhHHHhhhccCccHHHHHHHHH--HHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhh-h
Confidence 555555555444333 4443222221 1111 111248999999999998654 2223333333320 0
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. . .+...+++|||++|+| ++++++||.+
T Consensus 153 ~----------------------------~--~~~~~~~~~Sa~~~~~---v~~l~~~l~~ 180 (190)
T 2cxx_A 153 L----------------------------S--EIDKVFIPISAKFGDN---IERLKNRIFE 180 (190)
T ss_dssp G----------------------------G--GHHHHEEECCTTTCTT---HHHHHHHHHH
T ss_pred h----------------------------h--ccCCcEEEEecCCCCC---HHHHHHHHHH
Confidence 0 0 0124679999999999 9999999875
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=174.90 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=113.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
....++|+++|.+|||||||+++++++.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 230 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-LRPLSYPQTDVF 230 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT-TGGGGCTTCSEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH-HHHHhccCCCEE
Confidence 355689999999999999999999988876555 45544333 3566666 566999999999988 688889999999
Q ss_pred EEEEeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +..... |+..+.... .++|+++|+||+|+.......+ .+.. .. ... ....
T Consensus 231 i~v~d~~~~~s-~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~---~~~~-~~---~~~------v~~~ 292 (332)
T 2wkq_A 231 LICFSLVSPAS-FHHVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIE---KLKE-KK---LTP------ITYP 292 (332)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHHC----TTSCEEEEEECHHHHTCHHHHH---HHHH-TT---CCC------CCHH
T ss_pred EEEEeCCCHHH-HHHHHHHHHHHHHhhC----CCCcEEEEEEchhcccccchhh---hccc-cc---ccc------ccHH
Confidence 99999999665 666653 433333211 1499999999999975422111 1100 00 000 0000
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+... ....++++|||++|+| +++++++|.+
T Consensus 293 -~~~~~~~~----------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 326 (332)
T 2wkq_A 293 -QGLAMAKE----------IGAVKYLECSALTQRG---LKTVFDEAIR 326 (332)
T ss_dssp -HHHHHHHH----------TTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -HHHHHHHH----------cCCcEEEEecCCCCcC---HHHHHHHHHH
Confidence 00000000 0113789999999999 9999999865
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=171.36 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--cccccceeeEEEEecC-ceEEEEECCCchhh-----hhhhHHHhhhc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK--YFE--SCTSLKENVGNFTYEK-KNIKIVDLPGEDRL-----RNKFFDQYKSS 79 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~--~~~--~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~-----~~~~~~~~~~~ 79 (211)
..+||+++|++|||||||++++.++. +.. ..+|++.....+.+.+ ..+.+|||||++.+ .. .+..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTK-QKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTT-THHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhh-HHHHHhcc
Confidence 45899999999999999999999873 322 2367777777777744 48999999999988 45 67888899
Q ss_pred CCEEEEEEeCCCchhhHHHHHHH---HHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAES---LYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+|++|+|+|++++.+ +.....| +..+... .+++|+++|+||+|+.+
T Consensus 81 ad~vi~V~D~t~~~s-~~~l~~~~~~l~~l~~~----~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 81 VQVLIHVFDVESTEV-LKDIEIFAKALKQLRKY----SPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp CSEEEEEEETTCSCH-HHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSC
T ss_pred CCEEEEEEECCChhh-HHHHHHHHHHHHHHHHh----CCCCeEEEEEecccccc
Confidence 999999999998654 6655444 3333221 13499999999999976
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-25 Score=161.54 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=103.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCceEEEEECCCchhhhhh-------hHHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~ 77 (211)
++..||+++|++|||||||+++|++..+ ...++++ ......+.+++..+.+|||||+..+... ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 3568999999999999999999998764 2333333 3344567788888999999998542110 012357
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++++|+|++++.+ +. ...|+..+.... ..++|+++|+||+|+.+.... . +
T Consensus 82 ~~ad~~i~v~D~~~~~s-~~-~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~~----------~---------~-- 135 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDA-VD-PAEIWPEFIARL---PAKLPITVVRNKADITGETLG----------M---------S-- 135 (172)
T ss_dssp HTCSEEEEEEETTTCCC-CS-HHHHCHHHHHHS---CTTCCEEEEEECHHHHCCCCE----------E---------E--
T ss_pred HhCCEEEEEEECCCCCC-HH-HHHHHHHHHHhc---ccCCCEEEEEECccCCcchhh----------h---------h--
Confidence 88999999999988654 32 234544443321 124899999999998532100 0 0
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ....++++|||++|+| +++++++|.+
T Consensus 136 ----------------------~-~~~~~~~~~SA~~g~g---v~~l~~~l~~ 162 (172)
T 2gj8_A 136 ----------------------E-VNGHALIRLSARTGEG---VDVLRNHLKQ 162 (172)
T ss_dssp ----------------------E-ETTEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------h-ccCCceEEEeCCCCCC---HHHHHHHHHH
Confidence 0 0126889999999999 9999999875
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=156.68 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=113.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..++|+++|++|||||||+++|++..+...+ ||++. ..+.+.+++. .+.+||++|++.++. .+..+++.+++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~-~~~~~~~~~~~~i 82 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR-ITSAYYRGAVGAL 82 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC-CCHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh-hhHHHHhcCCEEE
Confidence 4589999999999999999999998775444 55443 4456778776 678899999998887 6777888999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|+++..+ +.....|+..+... ...+.|+++|+||+|+.+.+... .....+...
T Consensus 83 ~v~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~------------------- 139 (199)
T 2f9l_A 83 LVYDIAKHLT-YENVERWLKELRDH---ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK------------------- 139 (199)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------------------
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHh---cCCCCeEEEEEECcccccccCcCHHHHHHHHHH-------------------
Confidence 9999988554 66666666554321 11248999999999997654322 111122111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.++++||+++.| +++++++|.+
T Consensus 140 -------------------~~~~~~d~Sal~~~~---i~~l~~~l~~ 164 (199)
T 2f9l_A 140 -------------------NNLSFIETSALDSTN---VEEAFKNILT 164 (199)
T ss_dssp -------------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------cCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 126788899999999 9999999864
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=171.43 Aligned_cols=163 Identities=20% Similarity=0.201 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc----cccccceeeEEEEecCceEEEEECCCchhhhhh--hHHHhhhcCCEEEEE
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFE----SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK--FFDQYKSSAKGIVYV 86 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~d~ii~v 86 (211)
||+++|++|||||||++++.++.+.. ..||++.....+. ....+.+|||||+++|+.. .+..|+++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988654433 2377777766542 1238999999999999631 257899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++. +.+...+|..++.......+++|+++|+||+|+.......+....+..+... .
T Consensus 80 ~Ditd~---~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~-------~----------- 138 (331)
T 3r7w_B 80 IDSQDE---YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGE-------E----------- 138 (331)
T ss_dssp CCCSSC---TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHH-------T-----------
T ss_pred EECCch---HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHH-------H-----------
Confidence 999984 3344445444332100012349999999999997554332222222221110 0
Q ss_pred cccCCCCCCeeecCC-CCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDL-YNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++.. .+ ..++.|+++||++ .+ |.+.+..|.+
T Consensus 139 -la~~--------~~~~~~i~f~eTSAkd-~n---V~eAFs~iv~ 170 (331)
T 3r7w_B 139 -LLEL--------GLDGVQVSFYLTSIFD-HS---IYEAFSRIVQ 170 (331)
T ss_dssp -TSSS--------SCSCCCEEEECCCSSS-SH---HHHHHHHHHT
T ss_pred -HHhh--------cccccCceEEEeccCC-Cc---HHHHHHHHHH
Confidence 0000 00 1348999999998 57 9999977653
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=167.31 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=108.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc--cc--ccceeeEEEEec-CceEEEEECCCchhh----------hhhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES--CT--SLKENVGNFTYE-KKNIKIVDLPGEDRL----------RNKF 72 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~--t~~~~~~~~~~~-~~~~~i~D~~G~~~~----------~~~~ 72 (211)
..+...|+++|.+|||||||+|+|++.++... .+ |.......++.+ +..+.+|||||+... .. .
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~-~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE-I 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH-H
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH-H
Confidence 34567899999999999999999999876432 22 222334445666 679999999998443 24 4
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc-CCCCHHHHHHHHHHHHHHHhhh
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT-LAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
+..+++.+|++++|+|+++..+ ......|+. .+.. .++|+++|+||+|+. +........+.+.+.+.
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~-~~~~~~~~~-~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~----- 153 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWR-PRDEEIYQN-FIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP----- 153 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSC-HHHHHHHHH-HTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT-----
T ss_pred HHHHhhcCCEEEEEEeCCCCCC-chhHHHHHH-HHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc-----
Confidence 5667888999999999988544 333333333 3322 238999999999997 44333333333332211
Q ss_pred cccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 152 KSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| +++++++|.+
T Consensus 154 -------------------------------~~~~i~~vSA~~g~g---v~~L~~~l~~ 178 (308)
T 3iev_A 154 -------------------------------ELTEIVPISALKGAN---LDELVKTILK 178 (308)
T ss_dssp -------------------------------TCCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -------------------------------CCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 125689999999999 9999999865
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-24 Score=167.04 Aligned_cols=151 Identities=25% Similarity=0.290 Sum_probs=107.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccccc--eeeEEEEecCceEEEEECCCchhhhhh-----hHHHhh--hc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYF-ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRNK-----FFDQYK--SS 79 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~--~~ 79 (211)
+.++|+++|++|||||||+|+|++..+. ..+|+++ .....+.+++..+.+|||||+..+... ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 3579999999999999999999987762 3334443 344557778889999999998765431 244455 57
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++|+|+++.. ....++..+... .. +|+++|+||+|+............+.+.++
T Consensus 82 ~d~vi~v~D~~~~~----~~~~~~~~~~~~---~~--~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg------------- 139 (271)
T 3k53_A 82 ADVIVDIVDSTCLM----RNLFLTLELFEM---EV--KNIILVLNKFDLLKKKGAKIDIKKMRKELG------------- 139 (271)
T ss_dssp CSEEEEEEEGGGHH----HHHHHHHHHHHT---TC--CSEEEEEECHHHHHHHTCCCCHHHHHHHHS-------------
T ss_pred CcEEEEEecCCcch----hhHHHHHHHHhc---CC--CCEEEEEEChhcCcccccHHHHHHHHHHcC-------------
Confidence 99999999998743 333444444432 11 899999999998643322212333433333
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 140 -------------------------~~~~~~Sa~~g~g---i~~l~~~i~~ 162 (271)
T 3k53_A 140 -------------------------VPVIPTNAKKGEG---VEELKRMIAL 162 (271)
T ss_dssp -------------------------SCEEECBGGGTBT---HHHHHHHHHH
T ss_pred -------------------------CcEEEEEeCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-25 Score=173.13 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=102.1
Q ss_pred CCCCEEEEEcCC---------CCCHHHHHHHHHc---Ccccccc-ccc-ceee--EE--------------EEecCc--e
Q psy1914 9 SSQKVVLLSGLS---------LSGKTLLFARLVY---SKYFESC-TSL-KENV--GN--------------FTYEKK--N 56 (211)
Q Consensus 9 ~~~~ki~i~G~~---------~~GKSsli~~l~~---~~~~~~~-~t~-~~~~--~~--------------~~~~~~--~ 56 (211)
...+||+++|.+ |||||||+++|++ ..+...+ +|+ +... .. ..+++. .
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456899999999 9999999999998 4443333 333 2111 11 112233 7
Q ss_pred EEEEE-----------------------CCCchhhhhhhHHHhhh---------------------cCCEEEEEEeCCCc
Q psy1914 57 IKIVD-----------------------LPGEDRLRNKFFDQYKS---------------------SAKGIVYVLDSSTV 92 (211)
Q Consensus 57 ~~i~D-----------------------~~G~~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~~ 92 (211)
+.+|| ++|++++.. ++..+++ ++|++|+|+|++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLAS-AEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEEC-TTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhh-hhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 89999 445555544 4444555 69999999999986
Q ss_pred --hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccC
Q psy1914 93 --QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLG 170 (211)
Q Consensus 93 --~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (211)
.+ +..+..|+..+...... .++|+++|+||+|+...+..+ ...+... .
T Consensus 176 ~~~s-~~~~~~~l~~i~~~~~~--~~~piilV~NK~Dl~~~~~v~----~~~~~~~----~------------------- 225 (255)
T 3c5h_A 176 MNRN-FDDQLKFVSNLYNQLAK--TKKPIVVVLTKCDEGVERYIR----DAHTFAL----S------------------- 225 (255)
T ss_dssp ---C-HHHHHHHHHHHHHHHHH--TTCCEEEEEECGGGBCHHHHH----HHHHHHH----T-------------------
T ss_pred chhh-HHHHHHHHHHHHHHhcc--CCCCEEEEEEcccccccHHHH----HHHHHHH----h-------------------
Confidence 44 88888887776543111 238999999999996443221 1111110 0
Q ss_pred CCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 171 NPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| +++++++|.+
T Consensus 226 -----------~~~~~~~e~SAk~g~g---v~elf~~l~~ 251 (255)
T 3c5h_A 226 -----------KKNLQVVETSARSNVN---VDLAFSTLVQ 251 (255)
T ss_dssp -----------SSSCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------cCCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 0125789999999999 9999999864
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-23 Score=152.12 Aligned_cols=154 Identities=23% Similarity=0.283 Sum_probs=113.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.++|+++|++|||||||++++++..+...+ ||++. ..+.+.+++. .+.+||++|++++.. ++..+++.++++++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~-~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA-ITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC-CCHHHHTTCCEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh-hhHHHhhcCCEEEE
Confidence 479999999999999999999998875443 56554 3455777776 456799999988877 67788888999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|.++..+ +.....|+..+... ...+.|+++++||+|+.+..... .....+...
T Consensus 108 v~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-------------------- 163 (191)
T 1oix_A 108 VYDIAKHLT-YENVERWLKELRDH---ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-------------------- 163 (191)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH--------------------
T ss_pred EEECcCHHH-HHHHHHHHHHHHHh---cCCCCcEEEEEECcccccccccCHHHHHHHHHH--------------------
Confidence 999988544 65655565544321 11248999999999997644321 122222211
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.++++||++++| +++++++|.+
T Consensus 164 ------------------~~~~~ld~Sald~~~---v~~l~~~l~~ 188 (191)
T 1oix_A 164 ------------------NGLSFIETSALDSTN---VEAAFQTILT 188 (191)
T ss_dssp ------------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 126788899999999 9999999864
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=164.60 Aligned_cols=151 Identities=20% Similarity=0.208 Sum_probs=103.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc--ccc-cccee-eEEEEecCceEEEEECCCchh--------hhhhhHHHhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE--SCT-SLKEN-VGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQYKS 78 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~-t~~~~-~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~ 78 (211)
..+|+++|.+|||||||+|+|++.++.. ..| |+... ...+..++..+.+|||||+.. +.. ....+++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~-~~~~~l~ 85 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQ-EVYEALA 85 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHH-HHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHH-HHHHHHh
Confidence 4579999999999999999999987642 223 22222 233455666999999999865 444 4566788
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|++++.+ ....++...+... . .++|+++|+||+|+.+... ...+. +... .
T Consensus 86 ~ad~il~VvD~~~~~~---~~~~~i~~~l~~~-~--~~~p~ilV~NK~Dl~~~~~--~~~~~----~~~~----~----- 144 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPT---PEDELVARALKPL-V--GKVPILLVGNKLDAAKYPE--EAMKA----YHEL----L----- 144 (301)
T ss_dssp SCSEEEEEEETTSCCC---HHHHHHHHHHGGG-T--TTSCEEEEEECGGGCSSHH--HHHHH----HHHT----S-----
T ss_pred cCCEEEEEEECCCCCC---hHHHHHHHHHHhh-c--CCCCEEEEEECcccCCchH--HHHHH----HHHh----c-----
Confidence 9999999999987543 2234444444332 1 2389999999999975432 01111 1111 0
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| +++++++|.+
T Consensus 145 ------------------------~~~~~~~iSA~~g~g---v~~l~~~l~~ 169 (301)
T 1wf3_A 145 ------------------------PEAEPRMLSALDERQ---VAELKADLLA 169 (301)
T ss_dssp ------------------------TTSEEEECCTTCHHH---HHHHHHHHHT
T ss_pred ------------------------CcCcEEEEeCCCCCC---HHHHHHHHHH
Confidence 014679999999999 9999999865
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-23 Score=168.77 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=107.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccc--------------e-----eeEEEEecCceEEEEECC
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLK--------------E-----NVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~--------------~-----~~~~~~~~~~~~~i~D~~ 63 (211)
..++.++|+++|++|+|||||+++|++....... .+.+ . ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4567899999999999999999999974332111 0000 0 000000111479999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
||+.|.. .+..++..+|++++|+|+++... +.+..+++..+... .. .|+++|+||+|+.+........+.+.+
T Consensus 84 Gh~~~~~-~~~~~~~~~D~~ilVvda~~~~~-~~qt~~~~~~~~~~---~~--~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 84 GHEVLMA-TMLSGAALMDGAILVVAANEPFP-QPQTREHFVALGII---GV--KNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp CCGGGHH-HHHHHHTTCSEEEEEEETTSCSS-CHHHHHHHHHHHHH---TC--CCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHhhCCEEEEEEECCCCCC-cHHHHHHHHHHHHc---CC--CCEEEEEECccccchHHHHHHHHHHHH
Confidence 9999998 46777888999999999988542 45555555443321 11 589999999999765433333333322
Q ss_pred HHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 144 ELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 157 ~l~~-----------~---------------------~~~~~~ii~vSA~~g~g---i~~L~~~l~~ 188 (403)
T 3sjy_A 157 FTKG-----------T---------------------WAENVPIIPVSALHKIN---IDSLIEGIEE 188 (403)
T ss_dssp HHTT-----------S---------------------TTTTCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred HHHh-----------h---------------------CCCCCEEEEEECCCCcC---hHHHHHHHHH
Confidence 2210 0 01236889999999999 9999999875
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-23 Score=153.25 Aligned_cols=140 Identities=28% Similarity=0.426 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhc----CCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSS----AKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----~d~i 83 (211)
..+.++|+++|++|||||||+++|++..+....++..+... ..+.+..+.+|||||+..+.. .+..++.. +|++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~ 122 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRY-KLSDYLKTRAKFVKGL 122 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSC-CHHHHHHHHGGGEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-eeecCCeEEEEECCCCchHHH-HHHHHHHhhcccCCEE
Confidence 35678999999999999999999998876442221111111 122455899999999988876 46666655 8999
Q ss_pred EEEEeCC-CchhhHHHHHHHHHHHHcCcCc-CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhh
Q psy1914 84 VYVLDSS-TVQKTLRDVAESLYVILADPQV-QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRR 150 (211)
Q Consensus 84 i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 150 (211)
++|+|++ +.. .+.....|+..++..... ...++|+++|+||+|+.+.....++.+.+.+++..+..
T Consensus 123 i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~l~~ 190 (193)
T 2ged_A 123 IFMVDSTVDPK-KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE 190 (193)
T ss_dssp EEEEETTCCHH-HHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCch-hHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999998 644 477888888777653221 12349999999999999988888888888877776543
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-23 Score=171.18 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=106.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCceEEEEECCCc----------hhhhhhhHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGE----------DRLRNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~ 75 (211)
..+||+++|.+|||||||+|+|++... ...+++++ .....+.+++..+.+|||||+ +.+.......
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 458999999999999999999998775 33344333 334567788889999999998 5555421224
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH--HHHHHHHHHHHHHHhhhcc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS--SVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~ 153 (211)
+++.+|++++|+|++++.+ .+. ..++..+.. .++|+++|+||+|+.+.... .+..+.+.+.+..
T Consensus 254 ~~~~ad~~llv~D~~~~~s-~~~-~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~------ 319 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGII-EQD-KRIAGYAHE------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF------ 319 (436)
T ss_dssp HHHHCSEEEEEEETTTCCC-HHH-HHHHHHHHH------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG------
T ss_pred HHHhCCEEEEEEcCCcCCc-HHH-HHHHHHHHH------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhccc------
Confidence 6788999999999998654 322 344444332 23899999999999876542 2233333332221
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| ++++++++.+
T Consensus 320 ----------------------------~~~~~~~~~SA~tg~~---v~~l~~~i~~ 345 (436)
T 2hjg_A 320 ----------------------------LDYAPILFMSALTKKR---IHTLMPAIIK 345 (436)
T ss_dssp ----------------------------GTTSCEEECCTTTCTT---GGGHHHHHHH
T ss_pred ----------------------------CCCCCEEEEecccCCC---HHHHHHHHHH
Confidence 0115789999999999 9999988764
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=175.03 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCceEEEEECCCchhhhhh-------hHHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~ 77 (211)
+..++|+++|.+|||||||+|+|++... ....+++ ......+.+++..+.+|||||+..+... ....++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4568999999999999999999998753 3444433 3344567888889999999999776541 123367
Q ss_pred hcCCEEEEEEeCCCchhhHH---HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLR---DVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 154 (211)
+.+|++++|+|++++.+ .. ....++..+ . ++|+++|+||+|+.+...... +.+.+. .
T Consensus 311 ~~aD~vl~VvD~s~~~s-~~~~~~~~~~l~~l------~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~-------- 370 (476)
T 3gee_A 311 AEADLILYLLDLGTERL-DDELTEIRELKAAH------P--AAKFLTVANKLDRAANADALI--RAIADG-T-------- 370 (476)
T ss_dssp SSCSEEEEEEETTTCSS-GGGHHHHHHHHHHC------T--TSEEEEEEECTTSCTTTHHHH--HHHHHH-H--------
T ss_pred ccCCEEEEEEECCCCcc-hhhhHHHHHHHHhc------C--CCCEEEEEECcCCCCccchhH--HHHHhc-C--------
Confidence 88999999999998654 22 233332221 2 389999999999986654321 112211 0
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 371 -----------------------------~~~~i~vSAktg~G---I~eL~~~i~~ 394 (476)
T 3gee_A 371 -----------------------------GTEVIGISALNGDG---IDTLKQHMGD 394 (476)
T ss_dssp -----------------------------TSCEEECBTTTTBS---HHHHHHHHTH
T ss_pred -----------------------------CCceEEEEECCCCC---HHHHHHHHHH
Confidence 03578899999999 9999999865
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-23 Score=176.19 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=100.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEE--------ec----CceEEEEECCCchhhhhhhHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFT--------YE----KKNIKIVDLPGEDRLRNKFFD 74 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~--------~~----~~~~~i~D~~G~~~~~~~~~~ 74 (211)
....+||+++|.+|||||||+++++++.+...+ +|++....... ++ +..+.+|||||++.+.. +..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~-~~~ 116 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA-SHQ 116 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-TCH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-HHH
Confidence 345789999999999999999999998875544 66666655431 22 24899999999999988 688
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccc
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 154 (211)
.+++++|++|+|+|+++.+. . ..|+..+.... .++|+++|+||+|+........ +.+.+...
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~-~---~~~~~~l~~~~----~~~pvilV~NK~Dl~~~~~v~~--~~~~~~~~-------- 178 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSN-K---HYWLRHIEKYG----GKSPVIVVMNKIDENPSYNIEQ--KKINERFP-------- 178 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGG-H---HHHHHHHHHHS----SSCCEEEEECCTTTCTTCCCCH--HHHHHHCG--------
T ss_pred HHccCCcEEEEEEeCCCchh-H---HHHHHHHHHhC----CCCCEEEEEECCCcccccccCH--HHHHHHHH--------
Confidence 88999999999999987533 3 33444433221 2389999999999986554321 11221111
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| +++++++|.+
T Consensus 179 ---------------------------~~~~~~~~vSA~~g~g---i~eL~~~l~~ 204 (535)
T 3dpu_A 179 ---------------------------AIENRFHRISCKNGDG---VESIAKSLKS 204 (535)
T ss_dssp ---------------------------GGTTCEEECCC--------CTTHHHHHHH
T ss_pred ---------------------------hcCCceEEEecCcccC---HHHHHHHHHH
Confidence 0114689999999999 9999999864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=168.27 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=107.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCceEEEEECCC----------chhhhhhhHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPG----------EDRLRNKFFD 74 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~ 74 (211)
...++|+++|.+|+|||||+|+|++... ...+++++ .....+.+++..+.+||||| ++.+......
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 3568999999999999999999997653 33444333 33456778888999999999 6777663233
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH--HHHHHHHHHHHHHHhhhc
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS--SVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~ 152 (211)
.+++.+|++++|+|+++... .... ++...+.. .++|+++|+||+|+.+.+.. .+..+.+.+.+..
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~-~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----- 339 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDK-RIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF----- 339 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHH-HHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG-----
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHH-HHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc-----
Confidence 47788999999999987432 2222 33333322 23899999999999865543 3333333322221
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| +++++++|.+
T Consensus 340 -----------------------------~~~~~~~~~SA~~g~g---v~~l~~~i~~ 365 (456)
T 4dcu_A 340 -----------------------------LDYAPILFMSALTKKR---IHTLMPAIIK 365 (456)
T ss_dssp -----------------------------GTTSCEEECCTTTCTT---GGGHHHHHHH
T ss_pred -----------------------------CCCCCEEEEcCCCCcC---HHHHHHHHHH
Confidence 0125789999999999 9999999864
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=168.93 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc----c---ccc---ccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK----Y---FES---CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKS 78 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~----~---~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 78 (211)
.++++|+++|..++|||||+++|++.. . ... ..|+...+..+.+++..+.+|||||+++|.. .+..++.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~-~~~~~~~ 95 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIR-AVVSAAD 95 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHH-HHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHH-HHHHHHh
Confidence 346899999999999999999999866 1 111 1355555566777888999999999999988 4667788
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|+++.. ..+..+.+..+.. .++|+++|+||+|+.+........+++.+.+... ..
T Consensus 96 ~aD~~ilVvda~~g~--~~qt~e~l~~~~~------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~--------~~ 159 (482)
T 1wb1_A 96 IIDLALIVVDAKEGP--KTQTGEHMLILDH------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST--------HN 159 (482)
T ss_dssp SCCEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS--------SS
T ss_pred hCCEEEEEEecCCCc--cHHHHHHHHHHHH------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh--------cc
Confidence 899999999998732 2333444333221 1288899999999985332333333333322210 00
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|+| +++|+++|.+
T Consensus 160 -----------------------~~~~~ii~vSA~~g~g---I~~L~~~L~~ 185 (482)
T 1wb1_A 160 -----------------------LKNSSIIPISAKTGFG---VDELKNLIIT 185 (482)
T ss_dssp -----------------------GGGCCEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------------cccceEEEEECcCCCC---HHHHHHHHHH
Confidence 0126789999999999 9999999875
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=161.60 Aligned_cols=136 Identities=13% Similarity=0.160 Sum_probs=100.5
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc---------hhhHHHHHHHHHHHHcCcC
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV---------QKTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+.+++..+.+|||+|++.++. .|..|+++++++|+|+|+++. .+.+.++..|+..++....
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~-~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGG-GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhH-HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 355666666777777999999999999999 799999999999999999984 2359999999999988765
Q ss_pred cCCCCCcEEEEEeCCCccCC-----------------CCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCC
Q psy1914 112 VQSSRVNILVCCNKQDQTLA-----------------KSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDK 174 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (211)
+.+ +|+++|+||+|+... ...++..+.+......+..
T Consensus 258 ~~~--~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~------------------------ 311 (353)
T 1cip_A 258 FTD--TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK------------------------ 311 (353)
T ss_dssp GTT--SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCS------------------------
T ss_pred ccC--CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhc------------------------
Confidence 555 999999999999522 1222222222221110000
Q ss_pred CeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 175 DFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 175 ~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......+.+++|||++|+| |+++++|+.+
T Consensus 312 ----~~~~~~~~~~etSA~~~~n---V~~vF~~v~~ 340 (353)
T 1cip_A 312 ----RKDTKEIYTHFTCATDTKN---VQFVFDAVTD 340 (353)
T ss_dssp ----CTTTCCEEEEECCTTCHHH---HHHHHHHHHH
T ss_pred ----ccCCCceEEEEEECcCchh---HHHHHHHHHH
Confidence 0002348899999999999 9999999864
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=162.11 Aligned_cols=163 Identities=19% Similarity=0.200 Sum_probs=103.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------------------------cccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YFE--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.+..++|+++|.+++|||||+++|+... ... ...|+......++.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 4567899999999999999999996431 100 112344444556677
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchh--hH---HHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQK--TL---RDVAESLYVILADPQVQSSRVN-ILVCCNKQD 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D 127 (211)
+..+.+||||||++|.. .+..++..+|++|+|+|+++... .+ .+..+.+..... .++| +++|+||+|
T Consensus 94 ~~~~~iiDTPGh~~f~~-~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~------~~v~~iIvviNK~D 166 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVP-NMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT------AGVKHLIVLINKMD 166 (439)
T ss_pred CeEEEEEECCChHHHHH-HHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH------cCCCeEEEEeecCC
Confidence 77999999999999988 46667888999999999987421 01 234444333322 1266 999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
+..........+.+.+++...... .. .. ....++++++||++|+| ++++.
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~--~g---~~--------------------~~~~~~~i~iSA~~G~n---i~~l~ 216 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKK--VG---FN--------------------PKKDIHFMPCSGLTGAN---LKEQS 216 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHH--hc---cc--------------------ccCCeeEEEeeccCCcc---ccccc
Confidence 975433222222222222211000 00 00 00137899999999999 88843
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=167.64 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=105.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecCceEEEEECCCch-hhhh-------hhHHHhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEKKNIKIVDLPGED-RLRN-------KFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~-~~~~-------~~~~~~~ 77 (211)
..++|+++|.+|||||||+|+|++.+. ...+| |.......+.+++..+.+|||||+. .+.. .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 458999999999999999999998753 44454 3345566788888899999999987 4421 1234567
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++++|+|++++.+ ... .+.+ ..+ . ++|+++|+||+|+.......+ +.+...
T Consensus 322 ~~aD~vl~VvD~s~~~s-~~~-~~il-~~l-----~--~~piivV~NK~DL~~~~~~~~----~~~~~~----------- 376 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLD-EED-RKIL-ERI-----K--NKRYLVVINKVDVVEKINEEE----IKNKLG----------- 376 (482)
T ss_dssp HHCSEEEEEEETTSCCC-HHH-HHHH-HHH-----T--TSSEEEEEEECSSCCCCCHHH----HHHHHT-----------
T ss_pred hcccEEEEEecCCCCCC-HHH-HHHH-HHh-----c--CCCEEEEEECcccccccCHHH----HHHHhc-----------
Confidence 88999999999988654 322 2222 222 1 289999999999975433221 111110
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| +++++++|.+
T Consensus 377 -------------------------~~~~~i~iSAktg~G---i~eL~~~l~~ 401 (482)
T 1xzp_A 377 -------------------------TDRHMVKISALKGEG---LEKLEESIYR 401 (482)
T ss_dssp -------------------------CSTTEEEEEGGGTCC---HHHHHHHHHH
T ss_pred -------------------------CCCcEEEEECCCCCC---HHHHHHHHHH
Confidence 113578999999999 9999999875
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=165.95 Aligned_cols=109 Identities=25% Similarity=0.290 Sum_probs=76.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCceEEEEECCCchh---------hhhhhHHHhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDR---------LRNKFFDQYKS 78 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~ 78 (211)
.+|+++|.+|||||||+|+|++... ...+|.+ ......+.+++..+.+|||||++. ++. .+..+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~-~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKE-VTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHH-HHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHH-HHHHHHH
Confidence 5899999999999999999998764 3444433 345667888888999999999753 344 4667889
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
.+|++++|+|+++..+..+ .++..++.. .++|+++|+||+|+.
T Consensus 81 ~ad~il~V~D~~~~~~~~d---~~i~~~l~~-----~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKED---ESLADFLRK-----STVDTILVANKAENL 123 (439)
T ss_dssp TCSEEEEEEETTTCCCHHH---HHHHHHHHH-----HTCCEEEEEESCCSH
T ss_pred hCCEEEEEEECCCCCCHHH---HHHHHHHHH-----cCCCEEEEEeCCCCc
Confidence 9999999999987443222 223333321 128999999999985
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=160.97 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=98.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc---ccccc-c--ccceeeEEEEe---------------c--C------ceEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK---YFESC-T--SLKENVGNFTY---------------E--K------KNIK 58 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~---~~~~~-~--t~~~~~~~~~~---------------~--~------~~~~ 58 (211)
+++.++|+++|+.++|||||+++|++.. +.... + |+...+....+ + + ..+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998543 22211 2 44433333222 1 1 4799
Q ss_pred EEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH
Q psy1914 59 IVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK 138 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 138 (211)
+||||||+.|.. .+......+|++|+|+|+++... ..+..+.+..+.. +.. .|+++|+||+|+.+........
T Consensus 85 iiDtPGh~~f~~-~~~~~~~~~D~~ilVvda~~g~~-~~qt~e~l~~~~~---l~~--~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 85 FVDSPGHETLMA-TMLSGASLMDGAILVIAANEPCP-QPQTKEHLMALEI---LGI--DKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEECSSHHHHHH-HHHTTCSCCSEEEEEEETTSCSS-CHHHHHHHHHHHH---TTC--CCEEEEEECTTSSCTTTTTTHH
T ss_pred EEECCCHHHHHH-HHHHhHhhCCEEEEEEECCCCCC-CchhHHHHHHHHH---cCC--CeEEEEEEccCCCCHHHHHHHH
Confidence 999999999987 35556677899999999987421 2333333332221 111 5899999999998655432222
Q ss_pred HHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 139 TLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+.+.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 158 ~~i~~~l~~---~-----------------------------~~~~~~~i~vSA~~g~g---i~~L~~~l~~ 194 (408)
T 1s0u_A 158 EQIKEFVKG---T-----------------------------IAENAPIIPISAHHEAN---IDVLLKAIQD 194 (408)
T ss_dssp HHHHHHHTT---S-----------------------------TTTTCCEEEC------C---HHHHHHHHHH
T ss_pred HHHHHHHhh---c-----------------------------CCCCCeEEEeeCCCCCC---HHHHHHHHHH
Confidence 233222210 0 01226789999999999 9999999875
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=156.68 Aligned_cols=160 Identities=21% Similarity=0.202 Sum_probs=102.3
Q ss_pred CCE-EEEEcCCCCCHHHHHHHHHcCccc-ccc--cccceeeEEEEecCceEEEEECCCc---------hhhhhhhHHHhh
Q psy1914 11 QKV-VLLSGLSLSGKTLLFARLVYSKYF-ESC--TSLKENVGNFTYEKKNIKIVDLPGE---------DRLRNKFFDQYK 77 (211)
Q Consensus 11 ~~k-i~i~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~ 77 (211)
.++ |+++|++|||||||+|+|++.... ... +|.++....+.+++..+.+|||+|. +.+.. .+. .+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~-tl~-~~ 255 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFV-TLS-EA 255 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHH-HHH-GG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHH-HHH-HH
Confidence 455 999999999999999999987752 222 4555667788888889999999997 23443 233 46
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
..+|++++|+|++++..........+..++...... +.|+++|+||+|+.... .......+....... .
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~--~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l---~----- 324 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVS--GKPILVTLNKIDKINGD-LYKKLDLVEKLSKEL---Y----- 324 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC--SCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHH---C-----
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC--CCCEEEEEECCCCCCch-HHHHHHHHHHHHHHh---c-----
Confidence 779999999999886521222233333333321222 38999999999997543 221111111100100 0
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++++||++|+| +++++++|.+
T Consensus 325 ------------------------~~~~~~~~~SA~~g~g---i~~L~~~I~~ 350 (364)
T 2qtf_A 325 ------------------------SPIFDVIPISALKRTN---LELLRDKIYQ 350 (364)
T ss_dssp ------------------------SCEEEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------------CCCCcEEEEECCCCcC---HHHHHHHHHH
Confidence 0115678999999999 9999999875
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=159.28 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=107.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccc--cccceeeEEEEecCceEEEEECCCchhhh--------hhhHHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLR--------NKFFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 77 (211)
...++|+++|++|||||||+|+|++.... ... .|.......+..++..+.+|||||..... ......+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999987642 222 34555566666677789999999984321 11223344
Q ss_pred hcCCEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 78 SSAKGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
..+|++++|+|++++.. .+.....++..+.... . ++|+++|+||+|+.......+..+ .+.
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~--~~piilV~NK~Dl~~~~~~~~~~~----~~~---------- 306 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--K--DLPFLVVINKIDVADEENIKRLEK----FVK---------- 306 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--T--TSCEEEEECCTTTCCHHHHHHHHH----HHH----------
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--C--CCCEEEEEECcccCChHHHHHHHH----HHH----------
Confidence 56999999999887541 2555666666655421 1 389999999999975432211111 111
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| +++++++|.+
T Consensus 307 -------------------------~~~~~~~~iSA~~g~g---i~~l~~~i~~ 332 (357)
T 2e87_A 307 -------------------------EKGLNPIKISALKGTG---IDLVKEEIIK 332 (357)
T ss_dssp -------------------------HTTCCCEECBTTTTBT---HHHHHHHHHH
T ss_pred -------------------------hcCCCeEEEeCCCCcC---HHHHHHHHHH
Confidence 0115678999999999 9999999875
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=161.43 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=104.7
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc---ccccc-c--ccceeeEEEEec-----------------------CceE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK---YFESC-T--SLKENVGNFTYE-----------------------KKNI 57 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~---~~~~~-~--t~~~~~~~~~~~-----------------------~~~~ 57 (211)
.++..++|+++|+.++|||||+++|++.. +.... + |+...+..+.+. ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34567899999999999999999998543 22221 2 444444333321 1479
Q ss_pred EEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH
Q psy1914 58 KIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV 137 (211)
Q Consensus 58 ~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 137 (211)
.+||||||+.|... .......+|++|+|+|+++... ..+..+.+..+.. +.. .|+++|+||+|+.+.....+.
T Consensus 86 ~iiDtPGh~~f~~~-~~~~~~~~D~~ilVvda~~g~~-~~qt~e~l~~~~~---~~~--~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 86 SFIDAPGHEALMTT-MLAGASLMDGAILVIAANEPCP-RPQTREHLMALQI---IGQ--KNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp EEEECSSHHHHHHH-HHHCGGGCSEEEEEEETTSCSS-CHHHHHHHHHHHH---HTC--CCEEEEEECGGGSCHHHHHHH
T ss_pred EEEECCChHHHHHH-HHhhhhhCCEEEEEEECCCCCC-ChhHHHHHHHHHH---cCC--CcEEEEEECccCCCHHHHHHH
Confidence 99999999999884 5556677999999999987421 1233333332211 111 589999999999754322222
Q ss_pred HHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 138 KTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.+.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 159 ~~~i~~~l~~---~-----------------------------~~~~~~~i~vSA~~g~g---i~~L~~~l~~ 196 (410)
T 1kk1_A 159 YRQIKEFIEG---T-----------------------------VAENAPIIPISALHGAN---IDVLVKAIED 196 (410)
T ss_dssp HHHHHHHHTT---S-----------------------------TTTTCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred HHHHHHHHHh---c-----------------------------CcCCCeEEEeeCCCCCC---HHHHHHHHHH
Confidence 2222221110 0 01226889999999999 9999999875
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-23 Score=169.82 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=103.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc--ccc--cccceeeEEEEecCc-eEEEEECCCchhhhh------hhHHHh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF--ESC--TSLKENVGNFTYEKK-NIKIVDLPGEDRLRN------KFFDQY 76 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~------~~~~~~ 76 (211)
....++|+++|..|+|||||+++|++..+. ... .|+......+.+.+. .+.+|||||+..+.. ..+..+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 345789999999999999999999987753 222 344455666777776 999999999975532 124557
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
+.++|++++|+|++. .. ....++..+... ++|+++|+||+|+....... ..+.+.+
T Consensus 111 l~~aD~vllVvD~~~-~~---~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~~-~~~~l~~------------- 166 (423)
T 3qq5_A 111 FYRADCGILVTDSAP-TP---YEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAEE-LKGLYES------------- 166 (423)
T ss_dssp HTSCSEEEEECSSSC-CH---HHHHHHHHHHHT------TCCEEEECCCCTTTTCCCTH-HHHHSSC-------------
T ss_pred HhcCCEEEEEEeCCC-hH---HHHHHHHHHHhc------CCCEEEEEeCcCCCCccHHH-HHHHHHH-------------
Confidence 788999999999933 22 233444444322 38999999999998776541 1111110
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|+| +++++++|.+
T Consensus 167 -------------------------~~g~~v~~vSAktg~g---I~eL~~~L~~ 192 (423)
T 3qq5_A 167 -------------------------RYEAKVLLVSALQKKG---FDDIGKTISE 192 (423)
T ss_dssp -------------------------CTTCCCCCCSSCCTTS---TTTHHHHHHH
T ss_pred -------------------------HcCCCEEEEECCCCCC---HHHHHHHHHH
Confidence 1125778999999999 9999999875
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-24 Score=179.03 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=110.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEe-cCceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTY-EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.++|+++|++|+|||||+++|.+..+.... ++++. ....+.+ ++..+.+||||||+.|.. ++..+++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-MRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-SBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-HHHHHHccCCEEEE
Confidence 4688999999999999999999987653322 33333 3333444 345899999999999988 57778889999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|+++.. ..+..+.+..... .++|+++|+||+|+.+..... ....+.. ..
T Consensus 82 VVDa~dg~--~~qt~e~l~~~~~------~~vPiIVViNKiDl~~~~~~~-v~~~l~~-~~------------------- 132 (537)
T 3izy_P 82 VVAADDGV--MKQTVESIQHAKD------AHVPIVLAINKCDKAEADPEK-VKKELLA-YD------------------- 132 (537)
T ss_dssp ECBSSSCC--CHHHHHHHHHHHT------TTCCEEECCBSGGGTTTSCCS-SSSHHHH-TT-------------------
T ss_pred EEECCCCc--cHHHHHHHHHHHH------cCCcEEEEEecccccccchHH-HHHHHHh-hh-------------------
Confidence 99998844 3455555555442 238999999999997543221 1111110 00
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..++....++++++||++|+| +++|+++|..
T Consensus 133 ----------~~~e~~~~~~~iv~vSAktG~G---I~eLle~I~~ 164 (537)
T 3izy_P 133 ----------VVCEDYGGDVQAVHVSALTGEN---MMALAEATIA 164 (537)
T ss_dssp ----------SCCCCSSSSEEECCCCSSSSCS---SHHHHHHHHH
T ss_pred ----------hhHHhcCCCceEEEEECCCCCC---chhHHHHHHH
Confidence 0011223447899999999999 9999999864
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-22 Score=160.99 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=105.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecC-ceEEEEECCCchh----hhhhhHHHh---hhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEK-KNIKIVDLPGEDR----LRNKFFDQY---KSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~-~~~~i~D~~G~~~----~~~~~~~~~---~~~~ 80 (211)
.+|+++|.+|||||||+++|++.+. ...+ +|..++...+.+++ ..+.+|||||+.. +.. +...+ +..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~-l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG-LGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT-THHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch-hHHHHHHHHHhc
Confidence 4789999999999999999998664 2333 45667777788886 6999999999743 111 22333 3459
Q ss_pred CEEEEEEeCCCc--hhhHHHHHHHHHHHHcCc-CcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTV--QKTLRDVAESLYVILADP-QVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++|+|+|+++. ...+.....++..+.... .+. ++|+++|+||+|+.... +..+.+.+.+.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~--~~p~ilV~NK~Dl~~~~---e~~~~l~~~l~----------- 301 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT--ERPQIIVANKMDMPEAA---ENLEAFKEKLT----------- 301 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT--TSCBCBEEECTTSTTHH---HHHHHHHHHCC-----------
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhc--CCCEEEEEECccCCCCH---HHHHHHHHHhh-----------
Confidence 999999999872 223666665555554321 123 39999999999997432 11222222111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| +++|+++|.+
T Consensus 302 -------------------------~~~~v~~iSA~tg~g---i~eL~~~l~~ 326 (342)
T 1lnz_A 302 -------------------------DDYPVFPISAVTREG---LRELLFEVAN 326 (342)
T ss_dssp -------------------------SCCCBCCCSSCCSST---THHHHHHHHH
T ss_pred -------------------------cCCCEEEEECCCCcC---HHHHHHHHHH
Confidence 014568899999999 9999999865
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=154.60 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=99.7
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC----------CchhhHHHHHHHHHHHHcCc
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS----------TVQKTLRDVAESLYVILADP 110 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 110 (211)
||+|.....+++++..+.+|||+|+++++. .|..|+++++++|+|+|++ +. +.+.++..++..++..+
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~-~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERR-KWIHCFENVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHT-TGGGGCSSCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTSG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHH-HHHHHhCCCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhhh
Confidence 566777777888888999999999999999 7999999999999999765 43 34889999999998876
Q ss_pred CcCCCCCcEEEEEeCCCccCCC------------------CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 111 QVQSSRVNILVCCNKQDQTLAK------------------SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 111 ~~~~~~~p~iiv~nK~Dl~~~~------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+.+ +|+++++||+|+...+ +.++..+.+..+.....
T Consensus 231 ~~~~--~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~----------------------- 285 (327)
T 3ohm_A 231 WFQN--SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLN----------------------- 285 (327)
T ss_dssp GGTT--CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSC-----------------------
T ss_pred ccCC--ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhc-----------------------
Confidence 6666 9999999999996422 22222222222222100
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..-...+.++++||++++| |+++++.+.+
T Consensus 286 ------~~~~~~i~~~~TsA~d~~n---V~~vF~~v~~ 314 (327)
T 3ohm_A 286 ------PDSDKIIYSHFTCATDTEN---IRFVFAAVKD 314 (327)
T ss_dssp ------TTTTSCEEEEECCTTCHHH---HHHHHHHHHH
T ss_pred ------ccccCCcEEEEEEeecCHH---HHHHHHHHHH
Confidence 0012347889999999999 9999987754
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=159.41 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc---ccc---------------------------------ccccceeeEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY---FES---------------------------------CTSLKENVGNFTY 52 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~---------------------------------~~t~~~~~~~~~~ 52 (211)
+..++|+++|.+++|||||+++|++... ... ..|+......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4458999999999999999999986431 000 0122222333455
Q ss_pred cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
++..+.+||||||++|.. .+..++..+|++|+|+|+++.. ..+..+++...... .. .|+++|+||+|+.+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~-~~~~~~~~aD~~ilVvDa~~g~--~~qt~~~l~~~~~~---~~--~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTR-NMATGASTCDLAIILVDARYGV--QTQTRRHSYIASLL---GI--KHIVVAINKMDLNGF 172 (434)
T ss_dssp SSEEEEEEECCCSGGGHH-HHHHHHTTCSEEEEEEETTTCS--CHHHHHHHHHHHHT---TC--CEEEEEEECTTTTTS
T ss_pred CCceEEEEECCChHHHHH-HHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHHc---CC--CeEEEEEEcCcCCcc
Confidence 666899999999999988 4667788899999999998854 24444444433221 11 369999999999753
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-21 Score=160.73 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc------------------Ccccc-------cccccceeeEEEEecCceEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY------------------SKYFE-------SCTSLKENVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~------------------~~~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.+..+|+++|++|+|||||+++|+. ..... ...|+......+.+++..+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 3457999999999999999999961 11111 1124445566678888899999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
|+.+|.. .+..+++.+|++|+|+|+++... .+....|..+.. .++|+++|+||+|+.... .....+.+.+
T Consensus 91 G~~df~~-~~~~~l~~aD~allVvDa~~g~~--~~t~~~~~~~~~------~~iPiivviNK~Dl~~~~-~~~~l~ei~~ 160 (528)
T 3tr5_A 91 GHADFTE-DTYRTLTAVDSALMVIDAAKGVE--PRTIKLMEVCRL------RHTPIMTFINKMDRDTRP-SIELLDEIES 160 (528)
T ss_dssp CSTTCCH-HHHHGGGGCSEEEEEEETTTCSC--HHHHHHHHHHHT------TTCCEEEEEECTTSCCSC-HHHHHHHHHH
T ss_pred CchhHHH-HHHHHHHhCCEEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEeCCCCcccc-HHHHHHHHHH
Confidence 9999988 57888899999999999988543 334445544432 238999999999997543 3334444554
Q ss_pred HHH
Q psy1914 144 ELN 146 (211)
Q Consensus 144 ~~~ 146 (211)
.+.
T Consensus 161 ~l~ 163 (528)
T 3tr5_A 161 ILR 163 (528)
T ss_dssp HHC
T ss_pred hhC
Confidence 443
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=150.62 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-ccccc-c---ccceeeEEEEecCceEEEEECCCchhhhh----------hhH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK-YFESC-T---SLKENVGNFTYEKKNIKIVDLPGEDRLRN----------KFF 73 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~-~~~~~-~---t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~ 73 (211)
.+.++|+++|++|||||||+++|++.. +.... + |.......+.+++..+.+|||||+..+.. ...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999876 33222 2 33344556777888999999999865321 023
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEe-CCCccCC
Q psy1914 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCN-KQDQTLA 131 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n-K~Dl~~~ 131 (211)
..+++.+|++++|+|+++..........++....... ...|.++|+| |+|+.+.
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED----AMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG----GGGGEEEEEECGGGGTTC
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch----hhccEEEEEEcccccCCc
Confidence 3367889999999999864332333445555543211 1256777776 9999843
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=162.81 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=101.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------------------------cccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YFE--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.+..+||+++|.+|+|||||+++|+... +.. ...|+......+..+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4567999999999999999999997541 110 012333344456666
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchh-----hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQK-----TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+..+.+|||||+++|.. .+..++..+|++|+|+|+++... ...+..+.+..... ... .|+++|+||+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~-~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~--~~iIvviNK~Dl 183 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVP-NAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGI--HNLIIAMNKMDN 183 (483)
T ss_dssp SCEEEEECCCCCGGGHH-HHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTC--CCEEEEEECGGG
T ss_pred CceEEEEECCCcHHHHH-HHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCC--CcEEEEEECcCc
Confidence 77999999999999998 57778889999999999987421 01233333222221 111 569999999999
Q ss_pred cCCCC--HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHH
Q psy1914 129 TLAKS--SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQ 203 (211)
Q Consensus 129 ~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~ 203 (211)
.+... .++..+.+...+...... ...++++++||++|+| +++
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~~------------------------------~~~~~~i~iSA~~g~g---i~e 227 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGFF------------------------------EDNINWVPISGFSGEG---VYK 227 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCC------------------------------GGGEEEEECCSSSCTT---SSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCC------------------------------cccceEEEEeeecCCC---ccc
Confidence 86332 122223333222211000 1237899999999999 875
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-22 Score=166.41 Aligned_cols=147 Identities=18% Similarity=0.249 Sum_probs=95.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--cccccc--ceeeEEEEecCceEEEEECCCch--------hhhhhhHHHhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSL--KENVGNFTYEKKNIKIVDLPGED--------RLRNKFFDQYKS 78 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 78 (211)
.++|+++|.+|||||||+|+|++.... ...|.+ ...+..+.+++..+.+|||||+. .+.. .+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~-~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQ-QAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHH-HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHH-HHHHHHH
Confidence 378999999999999999999987653 223322 23344556667799999999985 5555 4677888
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|+.++.+ ....++...+.. .++|+++|+||+|+...... .. .
T Consensus 82 ~ad~il~vvD~~~~~~---~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~~~----------~~--------~--- 132 (436)
T 2hjg_A 82 EADVIIFMVNGREGVT---AADEEVAKILYR-----TKKPVVLAVNKLDNTEMRAN----------IY--------D--- 132 (436)
T ss_dssp HCSEEEEEEETTTCSC---HHHHHHHHHHTT-----CCSCEEEEEECCCC-----C----------CC--------S---
T ss_pred hCCEEEEEEeCCCCCC---HHHHHHHHHHHH-----cCCCEEEEEECccCccchhh----------HH--------H---
Confidence 9999999999987544 223445555543 33899999999998643110 00 0
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..++. ..++++||++|.| +++|+++|.+
T Consensus 133 -------------------~~~lg~-~~~~~iSA~~g~g---v~~L~~~i~~ 161 (436)
T 2hjg_A 133 -------------------FYSLGF-GEPYPISGTHGLG---LGDLLDAVAE 161 (436)
T ss_dssp -------------------SGGGSS-CCCEECBTTTTBT---HHHHHHHHHH
T ss_pred -------------------HHHcCC-CCeEEEeCcCCCC---hHHHHHHHHH
Confidence 000010 1458899999999 9999999865
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=156.05 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=64.2
Q ss_pred cceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc---------hhhHHHHHHHHHHHHcCcCcC
Q psy1914 43 LKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV---------QKTLRDVAESLYVILADPQVQ 113 (211)
Q Consensus 43 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~ 113 (211)
+|.....+.+++..+.+|||+|++.++. .|..|+++++++|+|+|+++. .+.+.++..++..++....+.
T Consensus 189 ~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~-~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPFKMVDVGGQRSERK-RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp SSEEEEEEEETTEEEEEEEECC--------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred cceEEEEeeeCCeEEEEEeccchhhhhh-hHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 3444455667777899999999999999 799999999999999999983 234899999999998776555
Q ss_pred CCCCcEEEEEeCCCcc
Q psy1914 114 SSRVNILVCCNKQDQT 129 (211)
Q Consensus 114 ~~~~p~iiv~nK~Dl~ 129 (211)
+ +|+++++||+|+.
T Consensus 268 ~--~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 N--VSIILFLNKTDLL 281 (362)
T ss_dssp T--SEEEEEEECHHHH
T ss_pred C--CCEEEEEEChhhh
Confidence 5 9999999999996
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-22 Score=165.63 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=96.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCceEEEEECCCchhhhhh-------hHHHhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~ 77 (211)
+..++|+++|++|||||||+|+|++... ....++++ .....+.+++..+.+|||||+..+... ....++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3568999999999999999999998654 33344333 344567788889999999998665431 122256
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++++|+|++++.. . ....++..+ . . .|+++|+||+|+.+..... .+
T Consensus 302 ~~aD~vl~VvD~s~~~~-~-~~~~i~~~l-~-----~--~piivV~NK~Dl~~~~~~~--------~~------------ 351 (462)
T 3geh_A 302 NTADLVLLTIDAATGWT-T-GDQEIYEQV-K-----H--RPLILVMNKIDLVEKQLIT--------SL------------ 351 (462)
T ss_dssp CSCSEEEEEEETTTCSC-H-HHHHHHHHH-T-----T--SCEEEEEECTTSSCGGGST--------TC------------
T ss_pred hcCCEEEEEeccCCCCC-H-HHHHHHHhc-c-----C--CcEEEEEECCCCCcchhhH--------HH------------
Confidence 78999999999988554 2 223333332 1 2 7999999999997543221 00
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++....+++++||++|+| +++++++|.+
T Consensus 352 ---------------------~~~~~~~~~i~iSAktg~G---i~eL~~~i~~ 380 (462)
T 3geh_A 352 ---------------------EYPENITQIVHTAAAQKQG---IDSLETAILE 380 (462)
T ss_dssp ---------------------CCCTTCCCEEEEBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------HHhccCCcEEEEECCCCCC---HHHHHHHHHH
Confidence 0011225789999999999 9999999865
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=153.88 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=99.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc--ccc-cc-ceeeEEEEecCceEEEEECCCch-hhhhhh-------HHHhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE--SCT-SL-KENVGNFTYEKKNIKIVDLPGED-RLRNKF-------FDQYKS 78 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~-t~-~~~~~~~~~~~~~~~i~D~~G~~-~~~~~~-------~~~~~~ 78 (211)
..+|+++|++|||||||+|+|++..+.. ..+ |+ ....+.+..++..+.+|||||+. .....+ ...+++
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 4589999999999999999999887532 222 22 22334456666799999999997 332211 233567
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|+++.. ....++...+.. .+.|+++|+||+|+... .....+.+.+ +. ..
T Consensus 88 ~~D~vl~Vvd~~~~~----~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~--~~~~~~~l~~-l~---~~------- 145 (301)
T 1ega_A 88 DVELVIFVVEGTRWT----PDDEMVLNKLRE-----GKAPVILAVNKVDNVQE--KADLLPHLQF-LA---SQ------- 145 (301)
T ss_dssp CEEEEEEEEETTCCC----HHHHHHHHHHHS-----SSSCEEEEEESTTTCCC--HHHHHHHHHH-HH---TT-------
T ss_pred cCCEEEEEEeCCCCC----HHHHHHHHHHHh-----cCCCEEEEEECcccCcc--HHHHHHHHHH-HH---Hh-------
Confidence 799999999997622 222344444432 23899999999999752 2222222221 11 00
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++. ..++++||++|+| +++++++|.+
T Consensus 146 ----------------------~~~-~~~i~iSA~~g~~---v~~l~~~i~~ 171 (301)
T 1ega_A 146 ----------------------MNF-LDIVPISAETGLN---VDTIAAIVRK 171 (301)
T ss_dssp ----------------------SCC-SEEEECCTTTTTT---HHHHHHHHHT
T ss_pred ----------------------cCc-CceEEEECCCCCC---HHHHHHHHHH
Confidence 000 2678999999999 9999999874
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=157.35 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=101.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCceEEEEECCCchhhhhh-----------hHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRNK-----------FFD 74 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~ 74 (211)
..++|+++|++|||||||+|+|++... ....+++ ....+.+.+++..+.+|||||+.+.... ...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 357999999999999999999998764 3333333 3445668888889999999998543220 012
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC--HHHHHHHHHHHHHHHhhhc
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS--SSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~ 152 (211)
.+++.+|++++|+|+++..+ ... ..+...+.. .++|+++|+||+|+..... ..+..+.+.+.+..
T Consensus 259 ~~i~~ad~vllv~d~~~~~~-~~~--~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----- 325 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGIT-RQD--QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF----- 325 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCC-HHH--HHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG-----
T ss_pred HHHhhCCEEEEEEeCCCCCC-HHH--HHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhcc-----
Confidence 35677999999999987443 221 222333221 2389999999999976443 22222223222210
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|.| ++++++.|.+
T Consensus 326 -----------------------------~~~~~~~~~SA~~g~g---v~~l~~~i~~ 351 (439)
T 1mky_A 326 -----------------------------IDYSPLIFTSADKGWN---IDRMIDAMNL 351 (439)
T ss_dssp -----------------------------GTTSCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------------CCCCcEEEEECCCCCC---HHHHHHHHHH
Confidence 0114678999999999 9999998864
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=164.68 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=106.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-----cccceeeEEEE----------------ecCceEEEEECCCchh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-----TSLKENVGNFT----------------YEKKNIKIVDLPGEDR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 67 (211)
.+.++|+++|++++|||||+++|++..+.... ++++....... ++...+++||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 35689999999999999999999975543322 22222222111 0111599999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC--------------
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-------------- 133 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-------------- 133 (211)
|.. .+..+++.+|++|+|+|+++... .+..+.+..+.. .++|+++|+||+|+.+...
T Consensus 83 F~~-~~~r~~~~aD~aILVvDa~~Gv~--~qT~e~l~~l~~------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~ 153 (594)
T 1g7s_A 83 FTT-LRKRGGALADLAILIVDINEGFK--PQTQEALNILRM------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (594)
T ss_dssp CTT-SBCSSSBSCSEEEEEEETTTCCC--HHHHHHHHHHHH------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred HHH-HHHHHHhhCCEEEEEEECCCCcc--HhHHHHHHHHHH------cCCeEEEEecccccccccccccCCchHHHHHHh
Confidence 988 56777888999999999988321 223333333322 2389999999999975321
Q ss_pred HHHHHHHHHHHHHHHhh-hcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 134 SSVVKTLLQKELNLVRR-TKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 134 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.......+...+..... .....+.. ..+. ...+....++++++||++|+| +++|++||..
T Consensus 154 ~~~v~~~~~e~i~ei~~~L~e~gl~~-------e~~~-------~l~~~~~~vpvv~vSA~tG~G---I~eLl~~I~~ 214 (594)
T 1g7s_A 154 DIQVQQKLDTKVYELVGKLHEEGFES-------ERFD-------RVTDFASQVSIIPISAITGEG---IPELLTMLMG 214 (594)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEE-------EEGG-------GCSCTTTEEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcch-------HHHH-------HHHhccCcceEEEEeccCCCC---chhHHHHHHh
Confidence 12222222211111000 00000000 0000 001123458999999999999 9999999864
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=155.95 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--cccc--------------------------------cccccceeeEEEEecC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFE--------------------------------SCTSLKENVGNFTYEK 54 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 54 (211)
++.++|+++|+.++|||||+++|+.. .+.. ...|+......+..++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999864 2211 1124444444566667
Q ss_pred ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHH-------HHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLR-------DVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
..+.+|||||+++|.. .+..++..+|++|+|+|+++ .+ ++ +..+.+...... .. .|+++++||+|
T Consensus 84 ~~~~iiDtpG~~~f~~-~~~~~~~~aD~~ilVvDa~~-gs-fe~~~~~~~qt~~~~~~~~~~---~~--~~iivviNK~D 155 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVK-NMITGASQADAAILVVSAKK-GE-YEAGMSVEGQTREHIILAKTM---GL--DQLIVAVNKMD 155 (435)
T ss_dssp CEEEECCCSSSTTHHH-HHHHTSSCCSEEEEEEECST-TH-HHHHHSTTCHHHHHHHHHHHT---TC--TTCEEEEECGG
T ss_pred eEEEEEECCCcHHHHH-HHHhhhhhcCEEEEEEECCC-Cc-cccccccchHHHHHHHHHHHc---CC--CeEEEEEEccc
Confidence 7999999999999998 47778889999999999987 32 33 333333322211 11 36899999999
Q ss_pred ccCC
Q psy1914 128 QTLA 131 (211)
Q Consensus 128 l~~~ 131 (211)
+.+.
T Consensus 156 l~~~ 159 (435)
T 1jny_A 156 LTEP 159 (435)
T ss_dssp GSSS
T ss_pred CCCc
Confidence 9864
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=155.27 Aligned_cols=147 Identities=15% Similarity=0.057 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
+|+++|.+++|||||+++|+ ....|+......+++++..+.+|||||+++|..+ ....++.+|++|+|+| .+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~-~~~~~~~aD~ailVvd-~~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKS-LITALNISDIAVLCIP-PQG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHH-HHHHHHTCSEEEEEEC-TTC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHH-HHHHHHHCCEEEEEEc-CCC
Confidence 99999999999999999998 3335566666667777779999999999999874 5556788999999999 542
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcE-EEEEe-CCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNI-LVCCN-KQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLG 170 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (211)
. ..+..+++..+.. .++|. ++++| |+|+ +........+++.+.+... .
T Consensus 96 ~--~~qt~e~~~~~~~------~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~-----------~---------- 145 (370)
T 2elf_A 96 L--DAHTGECIIALDL------LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT-----------V---------- 145 (370)
T ss_dssp C--CHHHHHHHHHHHH------TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS-----------T----------
T ss_pred C--cHHHHHHHHHHHH------cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc-----------C----------
Confidence 2 4555665554432 12677 89999 9999 4322222222333222100 0
Q ss_pred CCCCCeeecCCCCcEEEEE--Eeeec---CCCccchHHHHHHHhh
Q psy1914 171 NPDKDFEFSDLYNQVSFCD--TTGLD---SASEYDVEQLQDWMVT 210 (211)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~--~Sa~t---g~g~~~i~~l~~~i~~ 210 (211)
...+++++ +||++ |+| +++|+++|.+
T Consensus 146 -----------~~~~~ii~~~~SA~~~~~g~g---i~~L~~~l~~ 176 (370)
T 2elf_A 146 -----------LQDWECISLNTNKSAKNPFEG---VDELKARINE 176 (370)
T ss_dssp -----------TTTCEEEECCCCTTSSSTTTT---HHHHHHHHHH
T ss_pred -----------CCceEEEecccccccCcCCCC---HHHHHHHHHh
Confidence 01278999 99999 999 9999998864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-21 Score=150.01 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-ccc--------ccccceeeEEEEe--cCc--eEEEEECCCch-------hh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-FES--------CTSLKENVGNFTY--EKK--NIKIVDLPGED-------RL 68 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~--------~~t~~~~~~~~~~--~~~--~~~i~D~~G~~-------~~ 68 (211)
...++|+++|.+|+|||||+|+|++... ... .+|++.......+ ++. .+.+|||||+. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3468999999999999999999886553 222 3455555554443 443 89999999982 22
Q ss_pred hhhhH-------HHhhhc-------------CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 69 RNKFF-------DQYKSS-------------AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 69 ~~~~~-------~~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
.. +. ..|+.. +|+++++++.+... +......+...+.. ++|+++|+||+|+
T Consensus 86 ~~-i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~--~~~~d~~~l~~l~~------~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 86 QP-VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--LKPLDIEFMKRLHE------KVNIIPLIAKADT 156 (274)
T ss_dssp HH-HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS--CCHHHHHHHHHHTT------TSCEEEEESSGGG
T ss_pred HH-HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC--CCHHHHHHHHHHhc------cCCEEEEEeccCC
Confidence 22 22 334432 67899999765511 12222233333322 3899999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHH
Q psy1914 129 TLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208 (211)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i 208 (211)
....+.....+.+.+.+.. ..++++.+||++|+| +++++++|
T Consensus 157 ~~~~e~~~~~~~i~~~l~~-----------------------------------~~i~v~~~sa~~~~~---~~~l~~~l 198 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQE-----------------------------------HKIKIYEFPETDDEE---ENKLVKKI 198 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHH-----------------------------------TTCCCCCC--------------CHHH
T ss_pred CCHHHHHHHHHHHHHHHHH-----------------------------------cCCeEEcCCCCCChh---HHHHHHHH
Confidence 7554443333334333321 125567789999999 99999988
Q ss_pred hh
Q psy1914 209 VT 210 (211)
Q Consensus 209 ~~ 210 (211)
.+
T Consensus 199 ~~ 200 (274)
T 3t5d_A 199 KD 200 (274)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=160.10 Aligned_cols=152 Identities=14% Similarity=0.212 Sum_probs=98.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cc---------ccc-------cccceeeEEEEecC-----ceEEEEECCCchh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK--YF---------ESC-------TSLKENVGNFTYEK-----KNIKIVDLPGEDR 67 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~--~~---------~~~-------~t~~~~~~~~~~~~-----~~~~i~D~~G~~~ 67 (211)
-.+|+++|+.++|||||+++|+... .. ... .|+......+.+.. ..+++||||||.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4589999999999999999998621 11 000 12222333455542 3899999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
|.. .+..+++.+|++|+|+|+++... . +....|..... .++|+++|+||+|+.+.. .....+.+.+.+..
T Consensus 84 F~~-ev~~~l~~aD~aILVVDa~~gv~-~-qt~~~~~~~~~------~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 84 FSY-EVSRSLAACEGALLVVDAGQGVE-A-QTLANCYTAME------MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGI 153 (599)
T ss_dssp GHH-HHHHHHHHCSEEEEEEETTTCCC-T-HHHHHHHHHHH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCC
T ss_pred HHH-HHHHHHHHCCEEEEEEECCCCCC-H-HHHHHHHHHHH------CCCCEEEeeeccCccccc-HHHHHHHHHHHhCC
Confidence 998 57788889999999999988544 2 33333444432 238999999999998654 33333334332210
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ ...++++||++|.| +++++++|.+
T Consensus 154 ------------~-----------------------~~~vi~vSAktg~G---I~~Ll~~I~~ 178 (599)
T 3cb4_D 154 ------------D-----------------------ATDAVRCSAKTGVG---VQDVLERLVR 178 (599)
T ss_dssp ------------C-----------------------CTTCEEECTTTCTT---HHHHHHHHHH
T ss_pred ------------C-----------------------cceEEEeecccCCC---chhHHHHHhh
Confidence 0 01358899999999 9999999864
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=161.53 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=83.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc--c--------------------------------cccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF--E--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.++.++|+++|.+|+|||||+++|+..... . ...|+......+..+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 456899999999999999999999865321 0 112444455567777
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hh---HHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KT---LRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+..+.+|||||++.|.. .+..++..+|++|+|+|+++.. .. ..+..+.+..... ... .|+++|+||+|+
T Consensus 244 ~~~~~iiDTPG~e~f~~-~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---lgi--~~iIVVvNKiDl 317 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVP-NAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGI--HNLIIAMNKMDN 317 (611)
T ss_dssp SCEEEEEECCSSSCHHH-HHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---TTC--CEEEEEEECTTT
T ss_pred CceEEEEECCCCcccHH-HHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---cCC--CeEEEEEecccc
Confidence 77999999999999988 4677788899999999997631 00 1223333332221 111 459999999999
Q ss_pred cCC
Q psy1914 129 TLA 131 (211)
Q Consensus 129 ~~~ 131 (211)
.+.
T Consensus 318 ~~~ 320 (611)
T 3izq_1 318 VDW 320 (611)
T ss_dssp TTT
T ss_pred cch
Confidence 763
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=159.82 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--ccc---------c-------ccccceeeEEEEec---C--ceEEEEECCCch
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK--YFE---------S-------CTSLKENVGNFTYE---K--KNIKIVDLPGED 66 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~--~~~---------~-------~~t~~~~~~~~~~~---~--~~~~i~D~~G~~ 66 (211)
+-.+|+++|+.++|||||+++|+... ... . ..|+......+.+. + ..+++||||||.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34689999999999999999998521 110 0 01222223344443 2 378899999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
+|.. .+..+++.+|++|+|+|+++... . +....|..... .++|+++|+||+|+.+.. .....+.+.+.+.
T Consensus 85 dF~~-ev~r~l~~aD~aILVVDa~~gv~-~-qt~~~~~~a~~------~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg 154 (600)
T 2ywe_A 85 DFSY-EVSRALAACEGALLLIDASQGIE-A-QTVANFWKAVE------QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLG 154 (600)
T ss_dssp GGHH-HHHHHHHTCSEEEEEEETTTBCC-H-HHHHHHHHHHH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSC
T ss_pred hHHH-HHHHHHHhCCEEEEEEECCCCcc-H-HHHHHHHHHHH------CCCCEEEEEeccCccccC-HHHHHHHHHHhhC
Confidence 9988 47778899999999999998654 3 33344444432 238999999999998654 3333333332111
Q ss_pred HHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 147 LVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+ ...++++||++|.| +++++++|.+
T Consensus 155 ------------~~-----------------------~~~vi~vSAktg~G---I~~Lle~I~~ 180 (600)
T 2ywe_A 155 ------------LD-----------------------PEEAILASAKEGIG---IEEILEAIVN 180 (600)
T ss_dssp ------------CC-----------------------GGGCEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------CC-----------------------cccEEEEEeecCCC---chHHHHHHHH
Confidence 00 01368899999999 9999999864
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-21 Score=164.82 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=106.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-c--ccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-T--SLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+.++|+++|++++|||||+++|.+..+.... + |.......+.+++..+.+||||||+.|.. ++..++..+|++++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~-~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS-MRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT-SBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH-HHHHHHhhCCEEEE
Confidence 35689999999999999999999976543222 2 22222333555677899999999999988 56667788999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|+++.. ..+..+.+..... .++|+++++||+|+.+..... +...+ ...
T Consensus 81 VVda~~g~--~~qT~e~l~~~~~------~~vPiIVviNKiDl~~~~~~~-----v~~~l-----------~~~------ 130 (501)
T 1zo1_I 81 VVAADDGV--MPQTIEAIQHAKA------AQVPVVVAVNKIDKPEADPDR-----VKNEL-----------SQY------ 130 (501)
T ss_dssp EEETTTBS--CTTTHHHHHHHHH------TTCCEEEEEECSSSSTTCCCC-----TTCCC-----------CCC------
T ss_pred EeecccCc--cHHHHHHHHHHHh------cCceEEEEEEeccccccCHHH-----HHHHH-----------HHh------
Confidence 99998732 2233334433322 238999999999997542110 00000 000
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.-+.....++++++||++|+| +++|+++|..
T Consensus 131 ---------~~~~~~~~~~~~~v~vSAktG~g---I~eLle~I~~ 163 (501)
T 1zo1_I 131 ---------GILPEEWGGESQFVHVSAKAGTG---IDELLDAILL 163 (501)
T ss_dssp ---------CCCTTCCSSSCEEEECCTTTCTT---CTTHHHHTTT
T ss_pred ---------hhhHHHhCCCccEEEEeeeeccC---cchhhhhhhh
Confidence 00001122347899999999999 9999999853
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-20 Score=148.06 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=74.4
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC----------CchhhHHHHHHHHHHHHcCc
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS----------TVQKTLRDVAESLYVILADP 110 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 110 (211)
+|+|.....+++++..+.+|||+|+++++. .|..|+++++++|+|+|++ +. ..+.++..++..++...
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~-~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~-nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERK-XWVSFFSDVDCAIFVTSLAEYDMKLYEDGNT-SRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHH-HHHTTSCSCSEEEEEEEGGGTTCBCC--CCS-BHHHHHHHHHHHHHHCG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccc-cHHHHhccCCEEEEEEECCcccccccccccc-chHHHHHHHHHHHhhhh
Confidence 456667777888888999999999999999 7999999999999999998 43 45899999999999876
Q ss_pred CcCCCCCcEEEEEeCCCccC
Q psy1914 111 QVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 111 ~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+.+ +|+++++||+|+..
T Consensus 225 ~~~~--~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKG--AVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTT--SEEEEEEECHHHHH
T ss_pred ccCC--CeEEEEEECchhhh
Confidence 6666 99999999999863
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=143.27 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-c----ccceeeEEEEecCceEEEEECCCch-----------hhhhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-T----SLKENVGNFTYEKKNIKIVDLPGED-----------RLRNKF 72 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~----t~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~ 72 (211)
...+||+++|++|||||||+|+|++..+.... + |.......+.+++..+.+|||||.. .+.. .
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~-~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR-C 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH-H
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH-H
Confidence 45689999999999999999999987763322 2 3344455677888899999999953 3444 3
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
+..+++++|++|+|+|+++..........++....... ...|+++|+||+|+......
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~----~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER----ARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH----HGGGEEEEEECGGGC-----
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh----ccceEEEEEeCCccCCcccH
Confidence 44556778999999998764432233333333332211 11699999999999765443
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=154.49 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=82.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--cccc--------------------------------cccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--KYFE--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.+..++|+++|.+++|||||+++|++. .+.. ...|+......+..+
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 456789999999999999999999863 1110 113444455566667
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchh--hHH---HHHHHHHHHHcCcCcCCCCCc-EEEEEeCCC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQK--TLR---DVAESLYVILADPQVQSSRVN-ILVCCNKQD 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D 127 (211)
+..+.+||||||++|.. .+..++..+|++|+|+|+++... +++ +..+.+..... .++| +++|+||+|
T Consensus 84 ~~~~~iiDtPGh~~f~~-~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~------~~v~~iivviNK~D 156 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIK-NMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT------LGVRQLIVAVNKMD 156 (458)
T ss_dssp SEEEEEEECCCCTTHHH-HHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH------TTCCEEEEEEECGG
T ss_pred CceEEEEECCCcHHHHH-HHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH------cCCCeEEEEEEccc
Confidence 77999999999999988 46777888999999999986421 111 34444433322 1255 999999999
Q ss_pred ccC
Q psy1914 128 QTL 130 (211)
Q Consensus 128 l~~ 130 (211)
+.+
T Consensus 157 l~~ 159 (458)
T 1f60_A 157 SVK 159 (458)
T ss_dssp GGT
T ss_pred ccc
Confidence 974
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=152.16 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=82.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC--------ccccc----------c--cccceeeEEEEecCceEEEEECCCch
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS--------KYFES----------C--TSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~--------~~~~~----------~--~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
..+..++|+++|++++|||||+++|++. .+... . .|+......+..++..+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456789999999999999999999873 11110 1 13333333345556699999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
+|.. .+..++..+|++|+|+|+++.. ..+..+++..+.. .++| +++|+||+|+.+
T Consensus 87 ~f~~-~~~~~~~~aD~~ilVvda~~g~--~~qt~~~l~~~~~------~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 87 DYIK-NMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GGHH-HHHHHHTTCSSEEEEEETTTCC--CHHHHHHHHHHHH------TTCCCEEEEEECGGGCC
T ss_pred HHHH-HHHHHHHHCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEECccccC
Confidence 9988 4667788899999999998854 3455555554432 1278 899999999975
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=155.29 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Cccc--------------------------------ccccccceeeEEEEecC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY--SKYF--------------------------------ESCTSLKENVGNFTYEK 54 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 54 (211)
+..++|+++|+.++|||||+++|+. +.+. ...+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999974 2111 01134444445567777
Q ss_pred ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hhH---HHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCc
Q psy1914 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KTL---RDVAESLYVILADPQVQSSRVN-ILVCCNKQDQ 128 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 128 (211)
..+.+||||||++|..+ +..++..+|++|+|+|+++.. .++ .+..+.+..... .++| +++|+||+|+
T Consensus 121 ~~~~iiDtPGh~~f~~~-~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~------~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTN-MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART------QGINHLVVVINKMDE 193 (467)
T ss_dssp EEEEECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH------TTCSSEEEEEECTTS
T ss_pred eEEEEEECCCcHHHHHH-HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH------cCCCEEEEEEECccC
Confidence 79999999999999884 666778899999999998742 111 123333333221 1277 9999999999
Q ss_pred cCC
Q psy1914 129 TLA 131 (211)
Q Consensus 129 ~~~ 131 (211)
...
T Consensus 194 ~~~ 196 (467)
T 1r5b_A 194 PSV 196 (467)
T ss_dssp TTC
T ss_pred CCc
Confidence 753
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=152.12 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=62.2
Q ss_pred ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC----------CchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEe
Q psy1914 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS----------TVQKTLRDVAESLYVILADPQVQSSRVNILVCCN 124 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 124 (211)
..+.+|||+|+++++. +|..|+++++++|+|+|++ +.. .+.++..|+..++......+ +|+++|+|
T Consensus 183 v~l~iwDtaGQe~~r~-~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~-s~~~~~~~~~~i~~~~~~~~--~piiLvgN 258 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERR-KWIHLFEGVTAVIFCAAISEYDQTLFEDEQKN-RMMETKELFDWVLKQPCFEK--TSFMLFLN 258 (354)
T ss_dssp -EEEEEEECCSTTGGG-GTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSB-HHHHHHHHHHHHHTCGGGSS--CEEEEEEE
T ss_pred eeeEEEECCCchhhhH-HHHHHhCCCCEEEEEEECcccccccccccchh-HHHHHHHHHHHHHhccccCC--CeEEEEEE
Confidence 3799999999999999 7999999999999999998 434 49999999999987654445 99999999
Q ss_pred CCCccC
Q psy1914 125 KQDQTL 130 (211)
Q Consensus 125 K~Dl~~ 130 (211)
|+||..
T Consensus 259 K~DL~~ 264 (354)
T 2xtz_A 259 KFDIFE 264 (354)
T ss_dssp CHHHHH
T ss_pred Ccchhh
Confidence 999853
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.9e-21 Score=158.67 Aligned_cols=111 Identities=17% Similarity=0.256 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc--ccccc--eeeEEEEecCceEEEEECCC--------chhhhhhhHHHhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFES--CTSLK--ENVGNFTYEKKNIKIVDLPG--------EDRLRNKFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~t~~--~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~ 77 (211)
..++|+++|.+|||||||+|+|++..+... .|.++ .....+.+.+..+.+||||| ++.+.. .+..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~-~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQ-QAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHH-HHHhhH
Confidence 457999999999999999999998775422 23222 23334455666999999999 667777 577788
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
+.+|++|+|+|+.+.. .....++...+.. .++|+++|+||+|+.
T Consensus 101 ~~ad~il~VvD~~~~~---~~~d~~l~~~l~~-----~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 101 DEADVIIFMVNGREGV---TAADEEVAKILYR-----TKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHCSEEEEEEESSSCS---CHHHHHHHHHHTT-----CCSCEEEEEECC---
T ss_pred hhCCEEEEEEeCCCCC---ChHHHHHHHHHHH-----cCCCEEEEEECccch
Confidence 9999999999987633 2334455666543 338999999999985
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-20 Score=151.27 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-------ccc------------cccccceeeEEEEecCceEEEEECCCchhhhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK-------YFE------------SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
++++|+++|++++|||||+++|++.. +.. ...|+......+..++..+.+||||||++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998631 110 01122222223444556999999999999988
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
.+..++..+|++|+|+|+++.. ..+..+++..+.. .++| +++++||+|+.+
T Consensus 82 -~~~~~~~~aD~~ilVvda~~g~--~~qt~e~l~~~~~------~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 -NMITGTAPLDGCILVVAANDGP--MPQTREHLLLARQ------IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp -HHHHTSSCCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCCEEEEEECGGGCS
T ss_pred -HHHhhHhhCCEEEEEEECCCCC--CHHHHHHHHHHHH------cCCCeEEEEEECcccCC
Confidence 4667788899999999998843 2445555543322 1278 789999999975
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-20 Score=146.79 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=96.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-------ccc----------------------ccee-------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-------CTS----------------------LKEN------------- 46 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-------~~t----------------------~~~~------------- 46 (211)
...++|+++|.+|||||||+|+|++..+.+. .|+ +...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3467999999999999999999998876311 122 0000
Q ss_pred ----------eEEE--Eec-CceEEEEECCCch-------------hhhhhhHHHhhhcCCEEE-EEEeCCCchhhHHHH
Q psy1914 47 ----------VGNF--TYE-KKNIKIVDLPGED-------------RLRNKFFDQYKSSAKGIV-YVLDSSTVQKTLRDV 99 (211)
Q Consensus 47 ----------~~~~--~~~-~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~ 99 (211)
...+ ... ...+.+|||||.. .+.. +...|++.++.++ +|+|+++... ....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~il~v~d~~~~~~-~~~~ 181 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRD-MLMQFVTKENCLILAVSPANSDLA-NSDA 181 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHH-HHHHHHTSTTEEEEEEEESSSCGG-GCHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHH-HHHHHHcCCCeEEEEEecCCcchh-hhHH
Confidence 0001 111 2589999999963 3444 6777888888776 7899977432 1222
Q ss_pred HHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeec
Q psy1914 100 AESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFS 179 (211)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (211)
..++. .+.. .+.|+++|+||+|+.+..... .+.+...+ .
T Consensus 182 ~~~~~-~~~~-----~~~~~i~V~NK~Dl~~~~~~~--~~~~~~~~---------------------------------~ 220 (299)
T 2aka_B 182 LKIAK-EVDP-----QGQRTIGVITKLDLMDEGTDA--RDVLENKL---------------------------------L 220 (299)
T ss_dssp HHHHH-HHCT-----TCSSEEEEEECGGGSCTTCCC--HHHHTTCS---------------------------------S
T ss_pred HHHHH-HhCC-----CCCeEEEEEEccccCCCCchH--HHHHhCCc---------------------------------C
Confidence 22222 2221 238999999999997654311 11111000 0
Q ss_pred CC-CCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 180 DL-YNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 180 ~~-~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+ ....+++++||++|+| +++++++|.+
T Consensus 221 ~~~~~~~~v~~~SA~~~~g---i~~l~~~l~~ 249 (299)
T 2aka_B 221 PLRRGYIGVVNRSQKDIDG---KKDITAALAA 249 (299)
T ss_dssp CCTTCEEECCCCCCBCTTS---CBCHHHHHHH
T ss_pred cCCCCcEEEECCChhhccc---cccHHHHHHH
Confidence 00 0125778999999999 9999998753
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-21 Score=165.35 Aligned_cols=116 Identities=24% Similarity=0.260 Sum_probs=62.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--cc--------------------------------ccccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YF--------------------------------ESCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 53 (211)
.+..++|+++|.+++|||||+++|+... .. ....|+......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996421 00 0012333334445566
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---hh--HHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---KT--LRDVAESLYVILADPQVQSSRVN-ILVCCNKQD 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D 127 (211)
+..+.+||||||+.|... +..++..+|++|+|+|+++.. .. ..+..+.+..+.. .++| +++|+||+|
T Consensus 254 ~~~i~iiDTPGh~~f~~~-~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~------lgip~iIvviNKiD 326 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG-MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA------LGISEIVVSVNKLD 326 (592)
T ss_dssp -----CCEEESSSEEEEE-CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH------SSCCCEEEEEECGG
T ss_pred CeEEEEEECCChHHHHHH-HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH------cCCCeEEEEEeccc
Confidence 678999999999998874 555677899999999998632 00 1223333333222 1255 999999999
Q ss_pred ccC
Q psy1914 128 QTL 130 (211)
Q Consensus 128 l~~ 130 (211)
+.+
T Consensus 327 l~~ 329 (592)
T 3mca_A 327 LMS 329 (592)
T ss_dssp GGT
T ss_pred ccc
Confidence 975
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=131.20 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-cccccee--eEEEEecCceEEEEECCCch----------hhhhhhHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKEN--VGNFTYEKKNIKIVDLPGED----------RLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~--~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~ 75 (211)
.+..+|+++|++|||||||+++|++..+... .|+.+.. ...+.+++ .+.+|||||+. .++. ....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~-~~~~ 101 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQR-ALGE 101 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHH-HHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHH-HHHH
Confidence 4567999999999999999999998764222 2333322 23445554 78899999984 2333 2334
Q ss_pred hh---hcCCEEEEEEeCCCchhhHH-HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhh
Q psy1914 76 YK---SSAKGIVYVLDSSTVQKTLR-DVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 76 ~~---~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
++ ..++++++++|++++.+... ....+ +.. .++|+++|+||+|+............+...+..
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~----~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---- 168 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEW----AVD-----SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---- 168 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHH----HHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG----
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHH----HHH-----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh----
Confidence 44 46899999999987544222 12222 211 238999999999987432211111112111110
Q ss_pred cccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 152 KSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+.++++||+++.| +++++++|.+
T Consensus 169 -----------------------------~~~~~~~~~~Sal~~~~---~~~l~~~l~~ 195 (210)
T 1pui_A 169 -----------------------------FNGDVQVETFSSLKKQG---VDKLRQKLDT 195 (210)
T ss_dssp -----------------------------GCSCEEEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------------cCCCCceEEEeecCCCC---HHHHHHHHHH
Confidence 01126778999999999 9999999875
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-19 Score=157.47 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=103.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc-------ccc--c--------c--cccceeeEEEEecCceEEEEECCCchhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK-------YFE--S--------C--TSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~-------~~~--~--------~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.++.++|+++|++++|||||+++|++.. +.. . . .|+......+..++..+.+||||||++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567899999999999999999998631 000 0 0 1222222233445569999999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCCCCH-HHHHHHHHHHHH
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLAKSS-SVVKTLLQKELN 146 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~ 146 (211)
.. ....++..+|++|+|+|+++.. ..+..+++..+.. . ++| +++|+||+|+.+.... +.+.+++.+.+.
T Consensus 373 ~~-~mi~gas~AD~aILVVDAtdGv--~~QTrEhL~ll~~----l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 373 VK-NMITGAAQMDGAILVVAATDGP--MPQTREHILLGRQ----V--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp HH-HHHHTSCCCSEEEEEEETTTCS--CTTHHHHHHHHHH----H--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHhhCCEEEEEEcCCccC--cHHHHHHHHHHHH----c--CCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 88 4667788899999999998843 2344455543322 1 278 7899999999753211 112222222222
Q ss_pred HHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecC--------CCccchHHHHHHHhh
Q psy1914 147 LVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDS--------ASEYDVEQLQDWMVT 210 (211)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg--------~g~~~i~~l~~~i~~ 210 (211)
.... . +..++++++||++| +| +++|+++|.+
T Consensus 444 ~~G~------~------------------------~~~vp~IpvSAktG~ng~~~w~eG---I~eLleaL~~ 482 (1289)
T 3avx_A 444 QYDF------P------------------------GDDTPIVRGSALKALEGDAEWEAK---ILELAGFLDS 482 (1289)
T ss_dssp HTTS------C------------------------TTTCCEEECCSTTTTTCCHHHHHH---HHHHHHHHHH
T ss_pred hccc------c------------------------ccceeEEEEEeccCCCCCcccccc---chhhHhHHhh
Confidence 1000 0 11368899999999 57 8999998865
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=151.00 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=89.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--ccc-------------------ccccccceeeEEEEecCceEEEEECCCch
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--KYF-------------------ESCTSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
..+..+|+++|++|+|||||+++|+.. .+. ...+|+......+.+++..+++|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 345679999999999999999999831 110 11245555566677788899999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
.|.. .+..+++.+|++|+|+|+++... .+....|..+.. .++|+++|+||+|+.... .....+.+.+.+
T Consensus 89 df~~-~~~~~l~~aD~~ilVvDa~~g~~--~~t~~~~~~~~~------~~~p~ivviNKiD~~~~~-~~~~~~~l~~~l 157 (691)
T 1dar_A 89 DFTI-EVERSMRVLDGAIVVFDSSQGVE--PQSETVWRQAEK------YKVPRIAFANKMDKTGAD-LWLVIRTMQERL 157 (691)
T ss_dssp TCHH-HHHHHHHHCSEEEEEEETTTCSC--HHHHHHHHHHHH------TTCCEEEEEECTTSTTCC-HHHHHHHHHHTT
T ss_pred chHH-HHHHHHHHCCEEEEEEECCCCcc--hhhHHHHHHHHH------cCCCEEEEEECCCcccCC-HHHHHHHHHHHh
Confidence 9888 57788889999999999988544 233344444432 238999999999998553 444444454433
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=148.19 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--c------c---------cc--------ccccceeeEEEEecCceEEEEECC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK--Y------F---------ES--------CTSLKENVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~--~------~---------~~--------~~t~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.+..+|+++|++|+|||||+++|+... . . .. ..|+......+.+++..+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 456899999999999999999998631 1 0 00 012223344567777899999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
|+..|.. .+..++..+|++|+|+|+++... .+....+.... . .++|+++|+||+|+.... ..+..+.+.+
T Consensus 91 G~~df~~-~~~~~l~~aD~~IlVvDa~~g~~--~~t~~~~~~~~-~-----~~ipiivviNK~Dl~~~~-~~~~~~~i~~ 160 (529)
T 2h5e_A 91 GHEDFSE-DTYRTLTAVDCCLMVIDAAKGVE--DRTRKLMEVTR-L-----RDTPILTFMNKLDRDIRD-PMELLDEVEN 160 (529)
T ss_dssp CSTTCCH-HHHHGGGGCSEEEEEEETTTCSC--HHHHHHHHHHT-T-----TTCCEEEEEECTTSCCSC-HHHHHHHHHH
T ss_pred CChhHHH-HHHHHHHHCCEEEEEEeCCccch--HHHHHHHHHHH-H-----cCCCEEEEEcCcCCcccc-HHHHHHHHHH
Confidence 9999888 46778889999999999987533 23333333332 1 238999999999998654 3344455555
Q ss_pred HHH
Q psy1914 144 ELN 146 (211)
Q Consensus 144 ~~~ 146 (211)
.+.
T Consensus 161 ~l~ 163 (529)
T 2h5e_A 161 ELK 163 (529)
T ss_dssp HHC
T ss_pred HhC
Confidence 443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=145.57 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-------------cc--------ccccceeeEEEEecCceEEEEECCCchh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-------------ES--------CTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-------------~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
.+..+|+++|+.|+|||||+++|++.... .. ..++......+.+++..+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 34578999999999999999999842211 00 1233334445566667999999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
|.. .+..+++.+|++++|+|+++... .+...++..+.. .++|+++|+||+|+. .......+.+.+.+.
T Consensus 87 f~~-~~~~~l~~ad~~ilVvD~~~g~~--~qt~~~~~~~~~------~~ip~ilv~NKiD~~--~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 87 FVG-EIRGALEAADAALVAVSAEAGVQ--VGTERAWTVAER------LGLPRMVVVTKLDKG--GDYYALLEDLRSTLG 154 (665)
T ss_dssp GHH-HHHHHHHHCSEEEEEEETTTCSC--HHHHHHHHHHHH------TTCCEEEEEECGGGC--CCHHHHHHHHHHHHC
T ss_pred hHH-HHHHHHhhcCcEEEEEcCCcccc--hhHHHHHHHHHH------ccCCEEEEecCCchh--hhHHHHHHHHHHHhC
Confidence 988 57778888999999999877433 344455555443 138999999999998 344555555555443
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=133.15 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecCceEEEEECCCchhhhhhhHHHhh-------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYK------- 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------- 77 (211)
.+.++|+++|.+|+|||||+|+|++... ...++ |.......+.+++..+.+|||||+..+.. ....++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~-~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY-VNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE-ECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc-chHHHHHHHHHHH
Confidence 4679999999999999999999998775 33333 33445556778888999999999966533 122222
Q ss_pred --hcCCEEEEEEeCCCch--hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 78 --SSAKGIVYVLDSSTVQ--KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 78 --~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
.++|++++|+|++... ..-......+...... ....|+++|+||+|+...
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGK----EIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCG----GGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhch----hhhcCEEEEEeCcccCCC
Confidence 2689999998876522 1111233333333221 111499999999999643
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=145.10 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Cccc-----------c--------cccccceeeEEEEecCceEEEEECCCchh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY--SKYF-----------E--------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~~~-----------~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
.+..+|+++|.+|+|||||+++|+. +.+. . ...|+......+.+++..+++|||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4457999999999999999999984 2211 0 11344445556777888999999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
+.. .+..+++.+|++++|+|+++... .+....|..+.. .++|+++|+||+|+.... .....+.+.+.+
T Consensus 88 f~~-~~~~~l~~aD~~llVvDa~~g~~--~~~~~~~~~~~~------~~~p~ilviNK~Dl~~~~-~~~~~~~l~~~l 155 (693)
T 2xex_A 88 FTV-EVERSLRVLDGAVTVLDAQSGVE--PQTETVWRQATT------YGVPRIVFVNKMDKLGAN-FEYSVSTLHDRL 155 (693)
T ss_dssp CCH-HHHHHHHHCSEEEEEEETTTBSC--HHHHHHHHHHHH------TTCCEEEEEECTTSTTCC-HHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHCCEEEEEECCCCCCc--HHHHHHHHHHHH------cCCCEEEEEECCCccccc-hHHHHHHHHHHh
Confidence 888 47778888999999999988543 233344444432 138999999999998643 444444454443
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=142.29 Aligned_cols=127 Identities=16% Similarity=0.127 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--cccc-------------------cccccceeeEEEEecC-------ceEEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFE-------------------SCTSLKENVGNFTYEK-------KNIKIV 60 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~-------------------~~~t~~~~~~~~~~~~-------~~~~i~ 60 (211)
.+..+|+++|+.|+|||||+++|+.. .+.. ...|+......+.+++ ..+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999999742 1110 1123333444566665 689999
Q ss_pred ECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy1914 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 61 D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
||||+.+|.. .+..+++.+|++|+|+|+++... .+....|..... .++|+++|+||+|+.... .....+.
T Consensus 88 DTPG~~df~~-~~~~~l~~aD~aIlVvDa~~gv~--~qt~~~~~~~~~------~~ip~ilviNKiD~~~~~-~~~~~~~ 157 (704)
T 2rdo_7 88 DTPGHVDFTI-EVERSMRVLDGAVMVYCAVGGVQ--PQSETVWRQANK------YKVPRIAFVNKMDRMGAN-FLKVVNQ 157 (704)
T ss_pred eCCCccchHH-HHHHHHHHCCEEEEEEeCCCCCc--HHHHHHHHHHHH------cCCCEEEEEeCCCccccc-HHHHHHH
Confidence 9999999988 57778889999999999987543 334444444432 238999999999997654 3444445
Q ss_pred HHHHH
Q psy1914 141 LQKEL 145 (211)
Q Consensus 141 l~~~~ 145 (211)
+...+
T Consensus 158 l~~~l 162 (704)
T 2rdo_7 158 IKTRL 162 (704)
T ss_pred HHHHh
Confidence 55444
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-19 Score=143.44 Aligned_cols=116 Identities=19% Similarity=0.299 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-ccccc---------cccceeeEEE--EecCc--eEEEEECCCc-------hh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK-YFESC---------TSLKENVGNF--TYEKK--NIKIVDLPGE-------DR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~-~~~~~---------~t~~~~~~~~--~~~~~--~~~i~D~~G~-------~~ 67 (211)
...++|+++|++|+|||||+++|.+.. +...+ +|++.....+ ..++. .+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 345799999999999999999987643 22221 3444433333 33343 7899999999 55
Q ss_pred hhhhhHH-------HhhhcC-------------CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 68 LRNKFFD-------QYKSSA-------------KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 68 ~~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
+.. ++. .|++.+ ++++++++.+. ..+......+...+. .++|+++|+||+|
T Consensus 115 ~~~-i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~--~~l~~~d~~~~~~l~------~~~piIlV~NK~D 185 (361)
T 2qag_A 115 FKT-IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--HGLKPLDVAFMKAIH------NKVNIVPVIAKAD 185 (361)
T ss_dssp -CC-THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS--SSCCHHHHHHHHHTC------S-SCEEEEEECCS
T ss_pred HHH-HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC--CCcchhHHHHHHHhc------cCCCEEEEEECCC
Confidence 554 444 555433 35666666422 113333333333332 2389999999999
Q ss_pred ccCCCC
Q psy1914 128 QTLAKS 133 (211)
Q Consensus 128 l~~~~~ 133 (211)
+.....
T Consensus 186 l~~~~e 191 (361)
T 2qag_A 186 TLTLKE 191 (361)
T ss_dssp SSCHHH
T ss_pred CCCHHH
Confidence 976543
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=144.26 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=77.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc--cccccce----e-----eEE---------------------------
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFE--SCTSLKE----N-----VGN--------------------------- 49 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~t~~~----~-----~~~--------------------------- 49 (211)
....++|+++|.+|+|||||+|+|++..... ..|++.. . ..+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 4567899999999999999999999877432 2233310 0 001
Q ss_pred -------------------EEecC----ceEEEEECCCchhhh--hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHH
Q psy1914 50 -------------------FTYEK----KNIKIVDLPGEDRLR--NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLY 104 (211)
Q Consensus 50 -------------------~~~~~----~~~~i~D~~G~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 104 (211)
+.+.. ..+.+|||||..... ...+..+++.+|++++|+|++++.+ .... ..|.
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-~~e~-~~l~ 223 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-LGER-RYLE 223 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-HHHH-HHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-hhHH-HHHH
Confidence 11111 369999999986532 1145567889999999999987543 3222 3333
Q ss_pred HHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 105 VILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 105 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..+.. .+.|+++|+||+|+...
T Consensus 224 ~~l~~-----~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 224 NYIKG-----RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHTTT-----SCCCEEEEEECGGGGGG
T ss_pred HHHHh-----hCCCEEEEEECcccccc
Confidence 33322 23789999999999754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-18 Score=134.16 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-------ccc---ccee--------------------------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-------CTS---LKEN-------------------------------- 46 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-------~~t---~~~~-------------------------------- 46 (211)
...++|+++|.+|||||||+|+|++..+.+. .|+ +...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3467999999999999999999998775211 120 0000
Q ss_pred ------------------eEEEEe---cCceEEEEECCCchh-------------hhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 47 ------------------VGNFTY---EKKNIKIVDLPGEDR-------------LRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 47 ------------------~~~~~~---~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
...+.+ .+..+.+|||||... +.. ....+++.+|++++|+|+++.
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRR-MVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHH-HHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHH-HHHHHHcCCCeEEEEEEecCc
Confidence 000111 234899999999753 344 566788899999999997432
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.. .......+...+.. .+.|+++|+||+|+.....
T Consensus 181 ~~-~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 181 DL-ANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp CS-TTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSC
T ss_pred ch-hhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcch
Confidence 21 00111122233322 2389999999999976543
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=135.27 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=74.4
Q ss_pred cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC----------chhhHHHHHHHHHHHHcCc
Q psy1914 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST----------VQKTLRDVAESLYVILADP 110 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 110 (211)
+|+|.....+.+++..+.+|||+|+++++. .|..|+++++++|+|+|+++ .. .+.++..|+..++...
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~-~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~n-s~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERR-KWIQCFNDVTAIIFVVASSSYNMVIREDNQTN-RLQEALNLFKSIWNNR 280 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGG-GGGGGTTTCCEEEEEEETTGGGCBCTTTSCSB-HHHHHHHHHHHHHTCT
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhh-hhHhhccCCCEEEEEEECcccccccccccccc-hHHHHHHHHHHHHhcc
Confidence 577777777888888999999999999999 79999999999999999998 44 4999999999998765
Q ss_pred CcCCCCCcEEEEEeCCCcc
Q psy1914 111 QVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 111 ~~~~~~~p~iiv~nK~Dl~ 129 (211)
...+ +|+++|+||+||.
T Consensus 281 ~~~~--~piiLvgNK~DL~ 297 (402)
T 1azs_C 281 WLRT--ISVILFLNKQDLL 297 (402)
T ss_dssp TCSS--CCEEEEEECHHHH
T ss_pred cCCC--CeEEEEEEChhhh
Confidence 5555 9999999999985
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-17 Score=132.72 Aligned_cols=152 Identities=21% Similarity=0.251 Sum_probs=98.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecC-ceEEEEECCCchhh-------hhhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEK-KNIKIVDLPGEDRL-------RNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~-~~~~i~D~~G~~~~-------~~~~~~~~~~~~ 80 (211)
..|+++|++|||||||++++++... ...+ .|..++.+.+.+++ ..+.+||+||.... ...+ ......+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f-l~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF-LRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH-HHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH-HHHHHHH
Confidence 4689999999999999999997643 2223 34455667777776 68999999997321 1111 1224569
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+.+++++|++ ...+.+...+....... ..+.. .|.++|+||+|+... .....+.+.+.
T Consensus 237 ~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~--~P~ILVlNKlDl~~~----~~~~~l~~~l~------------- 295 (416)
T 1udx_A 237 RVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLR--RPSLVALNKVDLLEE----EAVKALADALA------------- 295 (416)
T ss_dssp SEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHH--SCEEEEEECCTTSCH----HHHHHHHHHHH-------------
T ss_pred HhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhc--CCEEEEEECCChhhH----HHHHHHHHHHH-------------
Confidence 9999999996 12233333333322211 11223 799999999999754 12222222222
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++.+||++++| +++|+++|.+
T Consensus 296 ----------------------~~g~~vi~iSA~~g~g---i~eL~~~i~~ 321 (416)
T 1udx_A 296 ----------------------REGLAVLPVSALTGAG---LPALKEALHA 321 (416)
T ss_dssp ----------------------TTTSCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------hcCCeEEEEECCCccC---HHHHHHHHHH
Confidence 0114678999999999 9999999865
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-17 Score=127.00 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCceEEEEECCCchhhhh---h---hHHHh--
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN---K---FFDQY-- 76 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~---~---~~~~~-- 76 (211)
...++|+++|.+|+|||||+|+|++..+. ...+.+. .....+..++..+.+|||||+..+.. . ....+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 45789999999999999999999987753 2222222 23334556666999999999965431 0 11222
Q ss_pred hhcCCEEEEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
.+.+|++++|+|++.. + +... ..++..+..... .+...|+++|+||+|+....
T Consensus 117 ~~~~d~il~v~~~d~~-~-~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-R-VDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TCEECEEEEEEESSCC-C-CCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGG
T ss_pred cCCCCEEEEEEeCCCC-c-CCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcC
Confidence 2369999999888542 1 2222 233333221100 01116999999999997544
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-16 Score=131.28 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=93.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-----------------ccccc--------cccceeeEEEEecCceEEEEECCC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK-----------------YFESC--------TSLKENVGNFTYEKKNIKIVDLPG 64 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~-----------------~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G 64 (211)
+..+|+|+|+.++|||||..+|+... ...++ .|+......+.|++..++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 45689999999999999999996210 01111 245555667889999999999999
Q ss_pred chhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHH
Q psy1914 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~ 144 (211)
|.+|..+ ....++-+|++|+|+|+.+... .++...|..... .++|+++++||+|+.... .....+.+.+.
T Consensus 110 HvDF~~E-v~raL~~~DgAvlVvda~~GV~--~qT~~v~~~a~~------~~lp~i~fINK~Dr~~ad-~~~~~~~i~~~ 179 (548)
T 3vqt_A 110 HQDFSED-TYRVLTAVDSALVVIDAAKGVE--AQTRKLMDVCRM------RATPVMTFVNKMDREALH-PLDVMADIEQH 179 (548)
T ss_dssp GGGCSHH-HHHHHHSCSEEEEEEETTTBSC--HHHHHHHHHHHH------TTCCEEEEEECTTSCCCC-HHHHHHHHHHH
T ss_pred cHHHHHH-HHHHHHhcCceEEEeecCCCcc--cccHHHHHHHHH------hCCceEEEEecccchhcc-hhHhhhhhhhh
Confidence 9999996 6777888999999999988543 556666666654 239999999999997654 44445555555
Q ss_pred HH
Q psy1914 145 LN 146 (211)
Q Consensus 145 ~~ 146 (211)
+.
T Consensus 180 l~ 181 (548)
T 3vqt_A 180 LQ 181 (548)
T ss_dssp HT
T ss_pred cC
Confidence 53
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-17 Score=130.97 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc--------cccccccce-------------------eeEE-----------
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY--------FESCTSLKE-------------------NVGN----------- 49 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~--------~~~~~t~~~-------------------~~~~----------- 49 (211)
..+..+|+++|.+|+|||||+++|...-. ....|+... ....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 34567999999999999999999974210 000000000 0000
Q ss_pred -----------EEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc
Q psy1914 50 -----------FTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN 118 (211)
Q Consensus 50 -----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 118 (211)
+...+..+.+|||||..... ......+|++++|+|+...+. .. .+. ..+.. .|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~----~~~~~~aD~vl~V~d~~~~~~-~~--------~l~-~~~~~--~p 219 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSE----VAVANMVDTFVLLTLARTGDQ-LQ--------GIK-KGVLE--LA 219 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHH----HHHHTTCSEEEEEEESSTTCT-TT--------TCC-TTSGG--GC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH----HHHHHhCCEEEEEECCCCCcc-HH--------HHH-HhHhh--cC
Confidence 01234589999999965432 233477999999999876432 10 011 11222 79
Q ss_pred EEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCc
Q psy1914 119 ILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASE 198 (211)
Q Consensus 119 ~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~ 198 (211)
+++|+||+|+.+..........+.+.+...... ...+..+++.+||++|+|
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~----------------------------~~~~~~~vi~iSA~~g~G- 270 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPR----------------------------EALWRPPVLTMSAVEGRG- 270 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTT----------------------------CCSCCCCEEEEBGGGTBS-
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhcccc----------------------------ccCCCCceEEEEcCCCCC-
Confidence 999999999975433333333444333221100 002336789999999999
Q ss_pred cchHHHHHHHhh
Q psy1914 199 YDVEQLQDWMVT 210 (211)
Q Consensus 199 ~~i~~l~~~i~~ 210 (211)
+++++++|.+
T Consensus 271 --i~~L~~~i~~ 280 (355)
T 3p32_A 271 --LAELWDTVER 280 (355)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 9999999865
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.3e-17 Score=119.78 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCC-CCCHHHHHHHHHcCc-ccc--ccccc---ceeeE-EEEecCc------------------------
Q psy1914 8 KSSQKVVLLSGLS-LSGKTLLFARLVYSK-YFE--SCTSL---KENVG-NFTYEKK------------------------ 55 (211)
Q Consensus 8 ~~~~~ki~i~G~~-~~GKSsli~~l~~~~-~~~--~~~t~---~~~~~-~~~~~~~------------------------ 55 (211)
.+.++|++++||. ..=..+|+.++.... ..+ ..|.. |.-.+ .+.+++.
T Consensus 13 ~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~ 92 (227)
T 3l82_B 13 IQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHT 92 (227)
T ss_dssp CCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-------------
T ss_pred cCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhh
Confidence 4678999999986 344558999998755 211 11100 11111 1222222
Q ss_pred ----eEEEEE------CCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHH---HHHHcCcC-cCCCCCcEEE
Q psy1914 56 ----NIKIVD------LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESL---YVILADPQ-VQSSRVNILV 121 (211)
Q Consensus 56 ----~~~i~D------~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~p~ii 121 (211)
++-... .+|+.++++ +|.+|+.++|++|||+|++|.+. ++ +.+.+ ..++.... +.+ +|++|
T Consensus 93 ~~~~k~~~~~~~~~~~~GGQ~klRp-lWr~Yy~~TdglIfVVDSsD~~R-~e-ak~EL~eL~~mL~ee~~L~g--apLLV 167 (227)
T 3l82_B 93 SAVNKMFSRHNEGDDQQGSRYSVIP-QIQKVCEVVDGFIYVANAEAHKR-HE-WQDEFSHIMAMTDPAFGSSG--RPLLV 167 (227)
T ss_dssp ------------------------C-CHHHHHHHCSEEEEEEECBTTCC-CC-HHHHHHHHHHHSCTTSSCSC--SCEEE
T ss_pred hhhhhcccccCCCccccCcHHHHHH-HHHHHhcCCCEEEEEeccccHhH-HH-HHHHHHHHHHHhcchhhhCC--CeEEE
Confidence 222233 348899999 89999999999999999998654 33 55555 44554432 344 99999
Q ss_pred EEeCC-CccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccc
Q psy1914 122 CCNKQ-DQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYD 200 (211)
Q Consensus 122 v~nK~-Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~ 200 (211)
++||. |++++....++.+.+. +. .+.+++.+..|||+||+|
T Consensus 168 lANKqqDlp~Ams~~EI~e~L~--L~---------------------------------~l~R~W~Iq~csA~TGeG--- 209 (227)
T 3l82_B 168 LSCISQGDVKRMPCFYLAHELH--LN---------------------------------LLNHPWLVQDTEAETLTG--- 209 (227)
T ss_dssp EEEESSTTSCBCCHHHHHHHTT--GG---------------------------------GGCSCEEEEEEETTTCTT---
T ss_pred EeCCCcCccCCCCHHHHHHHcC--Cc---------------------------------CCCCCEEEEEeECCCCcC---
Confidence 99995 8988888777665543 11 112449999999999999
Q ss_pred hHHHHHHHhh
Q psy1914 201 VEQLQDWMVT 210 (211)
Q Consensus 201 i~~l~~~i~~ 210 (211)
+.|.++||.+
T Consensus 210 L~EGLdWL~~ 219 (227)
T 3l82_B 210 FLNGIEWILE 219 (227)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999999975
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-17 Score=134.06 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccccc-ccc---------------eee--------------------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCT-SLK---------------ENV-------------------------- 47 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-t~~---------------~~~-------------------------- 47 (211)
.-++|+++|++|||||||+|+|++..+.+... +.+ ...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 44599999999999999999999977522110 000 000
Q ss_pred -------------EEEEe---cCceEEEEECCCchhh-------------hhhhHHHhhhcCCEEEEEEeCCCchhhHHH
Q psy1914 48 -------------GNFTY---EKKNIKIVDLPGEDRL-------------RNKFFDQYKSSAKGIVYVLDSSTVQKTLRD 98 (211)
Q Consensus 48 -------------~~~~~---~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~ 98 (211)
..+.+ ....+.+|||||...+ .. +...|++++|++|+|+|+.+.......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~-~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIEN-MVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHH-HHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHH-HHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 01111 1237899999998664 44 677788999999999987543221122
Q ss_pred HHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy1914 99 VAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
....+.. + ...+.|+++|+||+|+.....
T Consensus 192 ~~~l~~~-~-----~~~~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 192 AIKISRE-V-----DPSGDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp HHHHHHH-S-----CTTCTTEEEEEECGGGCCTTC
T ss_pred HHHHHHH-h-----cccCCCEEEEEeCCccCCCcc
Confidence 2222222 1 123489999999999986543
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-17 Score=135.45 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=91.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-------cc----------------------ccee--------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-------TS----------------------LKEN-------------- 46 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-------~t----------------------~~~~-------------- 46 (211)
..++|+++|.+|||||||+|+|++..+.+.. |+ +...
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999987763111 22 0000
Q ss_pred ---------eEEEE--ec-CceEEEEECCCch-------------hhhhhhHHHhhhcCC-EEEEEEeCCCchhhHHHHH
Q psy1914 47 ---------VGNFT--YE-KKNIKIVDLPGED-------------RLRNKFFDQYKSSAK-GIVYVLDSSTVQKTLRDVA 100 (211)
Q Consensus 47 ---------~~~~~--~~-~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~ 100 (211)
...+. .. ...+.+|||||.. .+.. +...|+..++ ++++|+|++.... -....
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iiL~v~~a~~~~~-~~~~~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRD-MLMQFVTKENCLILAVSPANSDLA-NSDAL 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHH-HHHHHHTSTTEEEEEEEETTSCGG-GCHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHH-HHHHHHcCCCeEEEEEecCCCccc-hhHHH
Confidence 00111 11 3479999999963 3444 5666776655 4555667654221 11122
Q ss_pred HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecC
Q psy1914 101 ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180 (211)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (211)
.++..+ . ..+.|+++|+||+|+.+.... ..+.+... ... + .
T Consensus 188 ~i~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~--------~~~----------------------l-~ 228 (353)
T 2x2e_A 188 KVAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLENK--------LLP----------------------L-R 228 (353)
T ss_dssp HHHHHH-C-----TTCTTEEEEEECGGGSCTTCC--CHHHHTTC--------SSC----------------------C-T
T ss_pred HHHHHh-C-----cCCCceEEEeccccccCcchh--HHHHHhCC--------ccc----------------------c-c
Confidence 222222 1 123899999999999755431 01111100 000 0 0
Q ss_pred CCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 181 LYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 181 ~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++.+||++|+| ++++++++.+
T Consensus 229 -~~~~~v~~~SA~~~~~---i~~l~~~l~~ 254 (353)
T 2x2e_A 229 -RGYIGVVNRSQKDIDG---KKDITAALAA 254 (353)
T ss_dssp -TCEEECCCCCHHHHHT---TCCHHHHHHH
T ss_pred -CCceEEEeCCcccccc---cccHHHHHHH
Confidence 0114678899999999 9999988753
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-17 Score=132.27 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=46.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEE---------------------ecC---ceEEEEECCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFT---------------------YEK---KNIKIVDLPG 64 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~---------------------~~~---~~~~i~D~~G 64 (211)
++|+++|.+|||||||+|+|++... ...+| |..++.+... +++ ..+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763 23333 3344444322 122 3799999999
Q ss_pred chhhhh---hhHH---HhhhcCCEEEEEEeCCCc
Q psy1914 65 EDRLRN---KFFD---QYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 65 ~~~~~~---~~~~---~~~~~~d~ii~v~d~~~~ 92 (211)
+..... .+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854211 0222 235789999999999874
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-17 Score=129.13 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC-cccccc---------cccceeeEEEEec--Cc--eEEEEECCCc-------hhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS-KYFESC---------TSLKENVGNFTYE--KK--NIKIVDLPGE-------DRL 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~-~~~~~~---------~t~~~~~~~~~~~--~~--~~~i~D~~G~-------~~~ 68 (211)
-.++|+++|++|||||||+++|.+. .++... ++.......+.++ +. .+++|||+|+ +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4579999999999999999998875 333221 2222222222222 22 7899999998 444
Q ss_pred hhhhHH-------Hhhhc-------------CCEEEEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy1914 69 RNKFFD-------QYKSS-------------AKGIVYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 69 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
.. +.. .+++. +++++++.+.+.. .++.. .+.+..+ . .+.|+++|+||.|
T Consensus 97 ~~-l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~--~Ld~~~~~~l~~l-~------~~~~iilV~~K~D 166 (301)
T 2qnr_A 97 KT-IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH--GLKPLDVAFMKAI-H------NKVNIVPVIAKAD 166 (301)
T ss_dssp TT-HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS--SCCHHHHHHHHHH-T------TTSCEEEEECCGG
T ss_pred HH-HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc--CCCHHHHHHHHHH-H------hcCCEEEEEEeCC
Confidence 43 333 33332 2345555554321 02121 1222222 1 2279999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHH
Q psy1914 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDW 207 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~ 207 (211)
+....+.....+.+.+.+.. ..+.++++||++| | +++++++
T Consensus 167 l~~~~e~~~~~~~~~~~~~~-----------------------------------~~~~~~e~Sa~~~-~---v~e~f~~ 207 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEE-----------------------------------HNIKIYHLPDAES-D---EDEDFKE 207 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHH-----------------------------------TTCCCCCCC-------------CHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------------------------------cCCeEEecCCccc-c---ccHHHHH
Confidence 97543322212222222221 1256788999999 8 9998877
Q ss_pred Hhh
Q psy1914 208 MVT 210 (211)
Q Consensus 208 i~~ 210 (211)
+.+
T Consensus 208 l~~ 210 (301)
T 2qnr_A 208 QTR 210 (301)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-16 Score=126.39 Aligned_cols=154 Identities=15% Similarity=0.098 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc------c--cccccccc---------------------------eeeEEE----
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK------Y--FESCTSLK---------------------------ENVGNF---- 50 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~------~--~~~~~t~~---------------------------~~~~~~---- 50 (211)
....|+++|++|||||||+|+|++.. . ...-|+.. +..+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 46899999999999999999998621 0 00001100 000000
Q ss_pred ----------EecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE
Q psy1914 51 ----------TYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120 (211)
Q Consensus 51 ----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 120 (211)
...+..+.++||||..... ......+|.+++|+|++.+.. .+... ..+ .. .|.+
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~----~~l~~~~d~vl~V~d~~~~~~-~~~i~---~~i------l~--~~~i 216 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE----FAVADMVDMFVLLLPPAGGDE-LQGIK---RGI------IE--MADL 216 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH----HHHHTTCSEEEEEECCC----------------------CC--SCSE
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh----hhHHhhCCEEEEEEcCCcchh-HHHhH---HHH------Hh--cCCE
Confidence 1244588999999964222 223567999999999976432 11111 111 12 6889
Q ss_pred EEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccc
Q psy1914 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYD 200 (211)
Q Consensus 121 iv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~ 200 (211)
+|+||+|+.+..........+...+.. .... ...+..+++.+||++|+|
T Consensus 217 vVlNK~Dl~~~~~~~~~~~~l~~~l~~---~~~~-------------------------a~~~~~~vi~iSA~~g~G--- 265 (349)
T 2www_A 217 VAVTKSDGDLIVPARRIQAEYVSALKL---LRKR-------------------------SQVWKPKVIRISARSGEG--- 265 (349)
T ss_dssp EEECCCSGGGHHHHHHHHHHHHHHHTT---CC------------------------------CCCEEEECCTTTCTT---
T ss_pred EEEeeecCCCchhHHHHHHHHHHHHHh---cCcc-------------------------ccCCCceEEEEecCCCCC---
Confidence 999999996422111111222211110 0000 001125678899999999
Q ss_pred hHHHHHHHhh
Q psy1914 201 VEQLQDWMVT 210 (211)
Q Consensus 201 i~~l~~~i~~ 210 (211)
+++|+++|.+
T Consensus 266 i~~L~~~I~~ 275 (349)
T 2www_A 266 ISEMWDKMKD 275 (349)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-16 Score=131.79 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc----ccccccceeeE------------------------------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF----ESCTSLKENVG------------------------------------ 48 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~----~~~~t~~~~~~------------------------------------ 48 (211)
...++|+++|.+|+|||||+|+|++..+. ...|++.....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998753 22233311100
Q ss_pred --EEEecC---ceEEEEECCCchh-----------hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCc
Q psy1914 49 --NFTYEK---KNIKIVDLPGEDR-----------LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQV 112 (211)
Q Consensus 49 --~~~~~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 112 (211)
.+++.+ ..+.+|||||+.. +.. ....++..+|++++|+|+++... ......++..+ ..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~-~~~~~l~~aD~il~VvDa~~~~~-~~~~~~~l~~l-~~--- 216 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPA-VLRWFAERVDLIILLFDAHKLEI-SDEFSEAIGAL-RG--- 216 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHH-HHHHHHHHCSEEEEEEETTSCCC-CHHHHHHHHHT-TT---
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHH-HHHHHHHhCCEEEEEEeCCcCCC-CHHHHHHHHHH-Hh---
Confidence 011111 2689999999864 444 56667888999999999977422 23333443332 22
Q ss_pred CCCCCcEEEEEeCCCccCCCCH
Q psy1914 113 QSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 113 ~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
.+.|+++|+||+|+....+.
T Consensus 217 --~~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 217 --HEDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp --CGGGEEEEEECGGGSCHHHH
T ss_pred --cCCCEEEEEECCCccCHHHH
Confidence 23899999999999865433
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=136.26 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc------------ccc-------cccccceeeEEEEec----------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK------------YFE-------SCTSLKENVGNFTYE---------------- 53 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~------------~~~-------~~~t~~~~~~~~~~~---------------- 53 (211)
.+..+|+++|+.|+|||||+++|+... +.. ...|+......+.++
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 345689999999999999999998641 110 012343344444554
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+..+++|||||+.+|.. .+..+++.+|++|+|+|+++... .+ ....|..... .++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~-~~~~~l~~aD~ailVvDa~~g~~-~q-t~~~~~~~~~------~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSS-EVTAALRVTDGALVVVDTIEGVC-VQ-TETVLRQALG------ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCH-HHHHHHHTCSEEEEEEETTTBSC-HH-HHHHHHHHHH------TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHH-HHHHHHHhCCEEEEEEeCCCCCC-HH-HHHHHHHHHH------cCCCeEEEEECCCcch
Confidence 34899999999999988 58888999999999999998654 32 3334444432 2389999999999974
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-17 Score=128.65 Aligned_cols=134 Identities=11% Similarity=0.113 Sum_probs=96.6
Q ss_pred HHHHHHHcCccc-ccc-cccceeeEEEEec-CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHH
Q psy1914 26 LLFARLVYSKYF-ESC-TSLKENVGNFTYE-KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAES 102 (211)
Q Consensus 26 sli~~l~~~~~~-~~~-~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~ 102 (211)
+|+.+++.+.|. ..+ ||++..+. +... +..+.+||+ +++++. +++.+++++|++|+|+|++++..++.....|
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~-l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~ 107 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNL-LTKPHVANVDQVILVVTVKMPETSTYIIDKF 107 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCE-ETTTTEESCCEEEEEECSSTTCCCHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccce-eeccccccCCEEEEEEeCCCCCCCHHHHHHH
Confidence 678888888886 554 78885554 3332 238999999 888888 7889999999999999999876456777777
Q ss_pred HHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCC
Q psy1914 103 LYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLY 182 (211)
Q Consensus 103 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (211)
+..+.. .++|+++|+||+||.+.+..++..+ +.+.+. .
T Consensus 108 l~~~~~------~~~piilv~NK~DL~~~~~v~~~~~-~~~~~~-----------------------------------~ 145 (301)
T 1u0l_A 108 LVLAEK------NELETVMVINKMDLYDEDDLRKVRE-LEEIYS-----------------------------------G 145 (301)
T ss_dssp HHHHHH------TTCEEEEEECCGGGCCHHHHHHHHH-HHHHHT-----------------------------------T
T ss_pred HHHHHH------CCCCEEEEEeHHHcCCchhHHHHHH-HHHHHh-----------------------------------h
Confidence 665532 2389999999999975432211111 111111 0
Q ss_pred CcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 183 NQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 183 ~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
. ..+++|||++|+| ++++++++.
T Consensus 146 ~-~~~~~~SAktg~g---v~~lf~~l~ 168 (301)
T 1u0l_A 146 L-YPIVKTSAKTGMG---IEELKEYLK 168 (301)
T ss_dssp T-SCEEECCTTTCTT---HHHHHHHHS
T ss_pred h-CcEEEEECCCCcC---HHHHHHHhc
Confidence 1 4678999999999 999999875
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-14 Score=115.61 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecC-----------------ceEEEEECCCchhhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEK-----------------KNIKIVDLPGEDRLRN 70 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~~ 70 (211)
.++|+++|.+|||||||+|+|++..+ ...+| |+.++.+.+.+++ ..+.+|||||+..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 47899999999999999999998764 33443 6667777777765 3699999999976432
Q ss_pred h------hHHHhhhcCCEEEEEEeCCC
Q psy1914 71 K------FFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 71 ~------~~~~~~~~~d~ii~v~d~~~ 91 (211)
. .+..+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 0 12335688999999999985
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.6e-16 Score=123.60 Aligned_cols=111 Identities=11% Similarity=0.173 Sum_probs=65.2
Q ss_pred cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
++..+.+|||||...... .....+|++++|+|++.... ++.... .. . +.|.++|+||+|+.+..
T Consensus 147 ~~~~i~liDTpG~~~~~~----~~~~~aD~vl~Vvd~~~~~~-~~~l~~---~~------~--~~p~ivv~NK~Dl~~~~ 210 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET----EVARMVDCFISLQIAGGGDD-LQGIKK---GL------M--EVADLIVINKDDGDNHT 210 (341)
T ss_dssp TTCSEEEEEEECCTTHHH----HHHTTCSEEEEEECC-------CCCCH---HH------H--HHCSEEEECCCCTTCHH
T ss_pred cCCCEEEEeCCCccchHH----HHHHhCCEEEEEEeCCccHH-HHHHHH---hh------h--cccCEEEEECCCCCChH
Confidence 355899999999876544 13578999999999975322 110000 00 1 26889999999997542
Q ss_pred CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 133 SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......+.+.+.+... ... .-.+..+++.+||++|+| +++++++|.+
T Consensus 211 ~~~~~~~~l~~~l~~~---~~~-------------------------~~~~~~~vi~iSA~~g~g---i~~L~~~l~~ 257 (341)
T 2p67_A 211 NVAIARHMYESALHIL---RRK-------------------------YDEWQPRVLTCSALEKRG---IDEIWHAIID 257 (341)
T ss_dssp HHHHHHHHHHHHHHHS---CCS-------------------------BTTBCCEEEECBGGGTBS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---ccc-------------------------ccCCCCcEEEeeCCCCCC---HHHHHHHHHH
Confidence 2222222222222110 000 001225778999999999 9999999864
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=113.89 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=87.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-------ccccc----------ceeeEEE------------------EecC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFE-------SCTSL----------KENVGNF------------------TYEK 54 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~ 54 (211)
+..+|+++|.+|||||||+++|+...... ..+.. +.....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45789999999999999999998642110 00100 1111111 1123
Q ss_pred ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC--C
Q psy1914 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA--K 132 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~ 132 (211)
..+.+|||+|+... + ..+....+.+++|+|+.+..... ..+ .... . .|+++|+||+|+.+. .
T Consensus 109 ~d~iiidt~G~~~~-~---~~~~~~~~~~i~vvd~~~~~~~~---~~~-~~~~------~--~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 109 CDLLLIENVGNLIC-P---VDFDLGENYRVVMVSVTEGDDVV---EKH-PEIF------R--VADLIVINKVALAEAVGA 172 (221)
T ss_dssp CSEEEEEEEEBSSG-G---GGCCCSCSEEEEEEEGGGCTTHH---HHC-HHHH------H--TCSEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCCCC-C---chhccccCcEEEEEeCCCcchhh---hhh-hhhh------h--cCCEEEEecccCCcchhh
Confidence 37889999996111 1 11112478899999997743211 111 1111 1 789999999999643 2
Q ss_pred CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 133 SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+..+.+.+ + ....+++++||++|+| +++++++|.+
T Consensus 173 ~~~~~~~~~~~-~------------------------------------~~~~~i~~~Sa~~g~g---i~~l~~~l~~ 210 (221)
T 2wsm_A 173 DVEKMKADAKL-I------------------------------------NPRAKIIEMDLKTGKG---FEEWIDFLRG 210 (221)
T ss_dssp CHHHHHHHHHH-H------------------------------------CTTSEEEECBTTTTBT---HHHHHHHHHH
T ss_pred HHHHHHHHHHH-h------------------------------------CCCCeEEEeecCCCCC---HHHHHHHHHH
Confidence 33333222221 0 1125789999999999 9999999864
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=117.86 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=77.8
Q ss_pred CCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHH---HHHcCcC-cCCCCCcEEEEEeC-CCccCCCCHHH
Q psy1914 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLY---VILADPQ-VQSSRVNILVCCNK-QDQTLAKSSSV 136 (211)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~p~iiv~nK-~Dl~~~~~~~~ 136 (211)
.+|+.++++ +|.+|+.++|++|||+|++|.+. ++ +.+.+. .++.+.. +.+ +|++|++|| .|++++....+
T Consensus 194 ~GGQ~~lRp-lWr~Yy~~tdglIfVVDSsDreR-le-ak~EL~eL~~mL~e~~~l~~--apLLVfANKkQDlp~Ams~~E 268 (312)
T 3l2o_B 194 QGSRYSVIP-QIQKVCEVVDGFIYVANAEAHKR-HE-WQDEFSHIMAMTDPAFGSSG--RPLLVLSCISQGDVKRMPCFY 268 (312)
T ss_dssp ---CCCCCH-HHHHHHHHCSEEEECCBCBTTCC-CC-HHHHHHHHHHHHCHHHHCTT--CCEEEEEEESSTTSCBCCHHH
T ss_pred CCCHHHHHH-HHHHHhcCCCEEEEEecCCcHhH-HH-HHHHHHHHHHHhcchhhcCC--CeEEEEeCCcccccCCCCHHH
Confidence 468899999 89999999999999999999765 33 433333 4443321 244 999999996 69988888776
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 137 VKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+.+. +. .+.+++.+..|||+||+| +.|.++||.+
T Consensus 269 I~e~L~--L~---------------------------------~l~r~W~Iq~csA~tGeG---L~EGldWL~~ 304 (312)
T 3l2o_B 269 LAHELH--LN---------------------------------LLNHPWLVQDTEAETLTG---FLNGIEWILE 304 (312)
T ss_dssp HHHHTT--GG---------------------------------GGCSCEEEEEEETTTCTT---HHHHHHHHHH
T ss_pred HHHHcC--Cc---------------------------------cCCCcEEEEecccCCCcC---HHHHHHHHHH
Confidence 665543 11 012448999999999999 9999999975
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.9e-15 Score=118.39 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=83.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCceEEEEECCCchhh-------hhhhHHHhhhcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDRL-------RNKFFDQYKSSA 80 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~ 80 (211)
..+|+++|.||||||||+|+|++.+. ...+ .|..++.+.+.+++..+.++||||...- ..+++ ...+.+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l-~~i~~a 150 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVI-AVARTC 150 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHH-HHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHH-HHHHhc
Confidence 45899999999999999999998653 3444 4667788889999999999999997321 11122 345679
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
|++++|+|+++|....+.+...+...- ..+.+ .|.++++||+|..
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~--k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVG--IRLNK--TPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTT--EEETC--CCCCEEEEECSSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhh--Hhhcc--CChhhhhhHhhhh
Confidence 999999999987654555555444332 12333 7889999999974
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=112.68 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=41.7
Q ss_pred eEEEEECCCchhhhhh-----hHHHhhhcCCEEEEEEeCCCchhhHH--HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 56 NIKIVDLPGEDRLRNK-----FFDQYKSSAKGIVYVLDSSTVQKTLR--DVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~-----~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
.+.+|||||+...... .....+.. +++++++|++....... ........... . .++|+++|+||+|+
T Consensus 110 d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~--~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---R--LGATTIPALNKVDL 183 (262)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---H--HTSCEEEEECCGGG
T ss_pred CEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---c--cCCCeEEEEecccc
Confidence 7999999999765430 01123455 89999999865332121 11111111111 1 12899999999999
Q ss_pred cCCC
Q psy1914 129 TLAK 132 (211)
Q Consensus 129 ~~~~ 132 (211)
....
T Consensus 184 ~~~~ 187 (262)
T 1yrb_A 184 LSEE 187 (262)
T ss_dssp CCHH
T ss_pred cccc
Confidence 7543
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=116.49 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=57.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEec---------------------CceEEEEECCCchh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYE---------------------KKNIKIVDLPGEDR 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~---------------------~~~~~i~D~~G~~~ 67 (211)
++|+++|.+|||||||+|+|++... ...+| |+.++.+...+. +..+.+|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997642 23332 555666655443 23699999999865
Q ss_pred h-------hhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 68 L-------RNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 68 ~-------~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
. ... +..+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~-fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQ-FLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHH-HHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHH-HHHHHHhCCEEEEEEECCC
Confidence 3 221 3335788999999999975
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-15 Score=128.77 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=85.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc--Cccc-----------ccc--------cccceeeEEEEecCceEEEEECCCchhhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY--SKYF-----------ESC--------TSLKENVGNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~--~~~~-----------~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
.+|+|+|+.++|||||..+|+. +... .++ .|+......+.+++..++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4689999999999999999972 1110 011 234444455778888999999999999999
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy1914 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
+ ....++-+|++|+|+|+.+.-. .++...|...... ++|.++++||+|+......
T Consensus 83 E-v~raL~~~DgavlVVDa~~GV~--~qT~~v~~~a~~~------~lp~i~~INKmDr~~a~~~ 137 (638)
T 3j25_A 83 E-VYRSLSVLDGAILLISAKDGVQ--AQTRILFHALRKM------GIPTIFFINKIDQNGIDLS 137 (638)
T ss_dssp H-HHHHHTTCSEEECCEESSCTTC--SHHHHHHHHHHHH------TCSCEECCEECCSSSCCSH
T ss_pred H-HHHHHHHhCEEEEEEeCCCCCc--HHHHHHHHHHHHc------CCCeEEEEeccccccCCHH
Confidence 6 6677888999999999987443 4455555655432 2899999999999876543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-15 Score=123.60 Aligned_cols=126 Identities=19% Similarity=0.283 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccc--------cccceeeEEEEe--cCc--eEEEEECCCchhhhh------h
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF-ESC--------TSLKENVGNFTY--EKK--NIKIVDLPGEDRLRN------K 71 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~--------~t~~~~~~~~~~--~~~--~~~i~D~~G~~~~~~------~ 71 (211)
.++|+++|++|||||||+++|++..+. ... +|+......+.+ .+. .+++||++|...... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 568999999999999999999987652 211 222222112212 222 689999999865311 0
Q ss_pred h-------HHH-----------hhhcCC--EEEEEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 72 F-------FDQ-----------YKSSAK--GIVYVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 72 ~-------~~~-----------~~~~~d--~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+ ... ++.+++ +++++.+.+. ..+.... .++..+ . .++|+++|+||+|+..
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~--~~L~~~d~~~lk~L-~------~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG--HGLKPLDIEFMKRL-H------EKVNIIPLIAKADTLT 181 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C--CSCCHHHHHHHHHH-T------TTSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc--cCCCHHHHHHHHHH-h------ccCcEEEEEEcccCcc
Confidence 1 111 223344 4455444431 1122222 333333 2 1389999999999976
Q ss_pred CCCHHHHHHHHHHHH
Q psy1914 131 AKSSSVVKTLLQKEL 145 (211)
Q Consensus 131 ~~~~~~~~~~l~~~~ 145 (211)
..........+.+.+
T Consensus 182 ~~ev~~~k~~i~~~~ 196 (418)
T 2qag_C 182 PEECQQFKKQIMKEI 196 (418)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 544433333343333
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=123.02 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=92.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccc-------------------------------------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLK------------------------------------------- 44 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~------------------------------------------- 44 (211)
.-++|+++|.+++|||||+|+|++..+.+.. +++.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4579999999999999999999997652111 1100
Q ss_pred -----e--eeEE--EEecCc-eEEEEECCCchh-------------hhhhhHHHhh-hcCCEEEEEEeCCCchhhHHHHH
Q psy1914 45 -----E--NVGN--FTYEKK-NIKIVDLPGEDR-------------LRNKFFDQYK-SSAKGIVYVLDSSTVQKTLRDVA 100 (211)
Q Consensus 45 -----~--~~~~--~~~~~~-~~~i~D~~G~~~-------------~~~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~ 100 (211)
+ .... +...+. .+.++||||... +.. +...|+ ..+|++++|+|++.... .....
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~-lv~~yi~~~aDlIL~VVDAs~~~~-~~d~l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRD-MLMQFVTKENCLILAVSPANSDLA-NSDAL 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHH-HHHHHHTSTTEEEEEEEETTSCSS-SCHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHH-HHHHHHhcCCcEEEEEEcCCCCcc-hhHHH
Confidence 0 0001 112222 689999999643 222 344454 46899999999986322 11111
Q ss_pred HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecC
Q psy1914 101 ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180 (211)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (211)
. +...+.. .+.|+++|+||+|+........ .+.. . .... +
T Consensus 208 ~-ll~~L~~-----~g~pvIlVlNKiDlv~~~~~~~---~il~--~-----~~~~----------------------l-- 247 (772)
T 3zvr_A 208 K-IAKEVDP-----QGQRTIGVITKLDLMDEGTDAR---DVLE--N-----KLLP----------------------L-- 247 (772)
T ss_dssp H-HHHHHCT-----TCSSEEEEEECTTSSCTTCCSH---HHHT--T-----CSSC----------------------C--
T ss_pred H-HHHHHHh-----cCCCEEEEEeCcccCCcchhhH---HHHH--H-----Hhhh----------------------h--
Confidence 2 2222221 2389999999999986543211 1110 0 0000 0
Q ss_pred CCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 181 LYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 181 ~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......++.+||++|+| +++|.+.|.+
T Consensus 248 ~lg~~~VV~iSA~~G~G---vdeL~eaI~~ 274 (772)
T 3zvr_A 248 RRGYIGVVNRSQKDIDG---KKDITAALAA 274 (772)
T ss_dssp SSCEEECCCCCCEESSS---SEEHHHHHHH
T ss_pred hccCCceEEeccccccc---chhHHHHHHH
Confidence 00125678899999999 9999888753
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=118.68 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=85.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--------cc-----ccc--------cccceeeEEEEec-------CceEEEEECC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK--------YF-----ESC--------TSLKENVGNFTYE-------KKNIKIVDLP 63 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~--------~~-----~~~--------~t~~~~~~~~~~~-------~~~~~i~D~~ 63 (211)
.+|+|+|+.++|||||..+|+... .. .++ .|+......+.|+ +..++++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 479999999999999999997311 10 000 1232333444554 3479999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
||.+|..+ ....++-+|++|+|+|+.+.-. .++...|....+. ++|.++++||+|+.... .....+++..
T Consensus 94 GHvDF~~E-v~~aLr~~DgavlvVDaveGV~--~qT~~v~~~a~~~------~lp~i~~iNKiDr~~a~-~~~~~~ei~~ 163 (709)
T 4fn5_A 94 GHVDFTIE-VERSLRVLDGAVVVFCGTSGVE--PQSETVWRQANKY------GVPRIVYVNKMDRQGAN-FLRVVEQIKK 163 (709)
T ss_dssp SCTTCHHH-HHHHHHHCSEEEEEEETTTCSC--HHHHHHHHHHHHH------TCCEEEEEECSSSTTCC-HHHHHHHHHH
T ss_pred CCcccHHH-HHHHHHHhCeEEEEEECCCCCc--hhHHHHHHHHHHc------CCCeEEEEccccccCcc-HHHHHHHhhh
Confidence 99999996 6677888999999999987543 4566666666542 29999999999997654 3334444444
Q ss_pred HH
Q psy1914 144 EL 145 (211)
Q Consensus 144 ~~ 145 (211)
.+
T Consensus 164 ~l 165 (709)
T 4fn5_A 164 RL 165 (709)
T ss_dssp HH
T ss_pred hc
Confidence 44
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=101.33 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY 36 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~ 36 (211)
.+.++|+++|.+|||||||+++|+...+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999999997644
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-13 Score=109.14 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc------Ccc--cccccccce-----------------eeEE--------------
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY------SKY--FESCTSLKE-----------------NVGN-------------- 49 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~------~~~--~~~~~t~~~-----------------~~~~-------------- 49 (211)
.+...++++|++|||||||++.+.+ ++. ....++... ....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999983 221 000010000 0000
Q ss_pred ----------EEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE
Q psy1914 50 ----------FTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119 (211)
Q Consensus 50 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 119 (211)
+...+..+.++||||...-.. .....+|.+++++|+..... .+.... .... .|.
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~----~v~~~~d~vl~v~d~~~~~~-~~~i~~---------~i~~--~~~ 196 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET----AVADLTDFFLVLMLPGAGDE-LQGIKK---------GIFE--LAD 196 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH----HHHTTSSEEEEEECSCC-------CCT---------THHH--HCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh----hHHhhCCEEEEEEcCCCccc-HHHHHH---------HHhc--ccc
Confidence 112456899999999864322 22467999999999864321 111100 0111 466
Q ss_pred EEEEeCCCccCCCC-HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCc
Q psy1914 120 LVCCNKQDQTLAKS-SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASE 198 (211)
Q Consensus 120 iiv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~ 198 (211)
++++||+|+..... .....+.+...+.. .... ...+..+++.+||++|+|
T Consensus 197 ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l---~~~~-------------------------~~~~~~~vl~~Sal~g~g- 247 (337)
T 2qm8_A 197 MIAVNKADDGDGERRASAAASEYRAALHI---LTPP-------------------------SATWTPPVVTISGLHGKG- 247 (337)
T ss_dssp EEEEECCSTTCCHHHHHHHHHHHHHHHTT---BCCS-------------------------BTTBCCCEEEEBTTTTBS-
T ss_pred EEEEEchhccCchhHHHHHHHHHHHHHHh---cccc-------------------------ccCCCCCEEEEeCCCCCC-
Confidence 77889999753221 11111222111110 0000 000123567799999999
Q ss_pred cchHHHHHHHhh
Q psy1914 199 YDVEQLQDWMVT 210 (211)
Q Consensus 199 ~~i~~l~~~i~~ 210 (211)
+++|+++|.+
T Consensus 248 --i~~L~~~I~~ 257 (337)
T 2qm8_A 248 --LDSLWSRIED 257 (337)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 9999999865
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-12 Score=102.03 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=55.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCc-----------------eEEEEECCCc
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKK-----------------NIKIVDLPGE 65 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~-----------------~~~i~D~~G~ 65 (211)
.+-....+|+++|++|||||||+|+|++... ...+ +|..++.+.+.+.+. .+.+|||||+
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 3445678999999999999999999998765 2233 355667777766542 4999999998
Q ss_pred hhhhh------hhHHHhhhcCCEEEEEEeCCC
Q psy1914 66 DRLRN------KFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 66 ~~~~~------~~~~~~~~~~d~ii~v~d~~~ 91 (211)
..... ..+..+++.+|++++|+|+++
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 76443 124556788999999999975
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-10 Score=93.67 Aligned_cols=111 Identities=27% Similarity=0.325 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH------cCcc--ccc--c-cc-----------cceeeEE-----------------E
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLV------YSKY--FES--C-TS-----------LKENVGN-----------------F 50 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~------~~~~--~~~--~-~t-----------~~~~~~~-----------------~ 50 (211)
+...|+++|++||||||++++|. +.+. ... + +. .+..+.. +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998 3321 000 0 00 0011000 0
Q ss_pred EecCceEEEEECCCchhhhhhhHHH---h--hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE-EEEEe
Q psy1914 51 TYEKKNIKIVDLPGEDRLRNKFFDQ---Y--KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI-LVCCN 124 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~---~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~n 124 (211)
..++..+.++||||.......++.. . ...+|.+++|+|+......... ...+... +|+ .+|+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~-a~~~~~~----------~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-AKAFKDK----------VDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH-HHHHHHH----------HCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH-HHHHHhh----------cCceEEEEe
Confidence 1144589999999985321111111 1 1268999999999875432222 1222211 564 88999
Q ss_pred CCCccCC
Q psy1914 125 KQDQTLA 131 (211)
Q Consensus 125 K~Dl~~~ 131 (211)
|+|....
T Consensus 249 K~D~~~~ 255 (504)
T 2j37_W 249 KLDGHAK 255 (504)
T ss_dssp CTTSCCC
T ss_pred CCccccc
Confidence 9998744
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-11 Score=99.54 Aligned_cols=125 Identities=13% Similarity=0.138 Sum_probs=80.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC-----cc--cccccccceeeEEEEecCceEEEEECCCchhhh-------hhhHHHh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS-----KY--FESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR-------NKFFDQY 76 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~-----~~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~ 76 (211)
..+++++|.+|+|||||+|+|++. .. ....|.++.....+.++. .+.++||||..... .+....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 468999999999999999999975 22 233344433444444443 58999999974221 1122223
Q ss_pred h--hcCCEEEEEEeCCCc--hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 77 K--SSAKGIVYVLDSSTV--QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 77 ~--~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
+ ...+.+++++|+... ...+.. .+. +...+.|+++++||+|..+....+...+.+.+++.
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~-----l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g 304 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDY-----IKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG 304 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEE-----EESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEE-----ccCCCceEEEEecCCcccccccHHHHHHHHHHhcC
Confidence 2 568999999998431 000100 111 22234899999999999887777777777777665
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.9e-11 Score=93.99 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=67.7
Q ss_pred chhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHH
Q psy1914 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~ 144 (211)
++++.. +.+.++.++|.+++|+|++++..++..+.+|+..+.. .++|+++|+||+||.+...... .+.+.+.
T Consensus 66 ~er~~~-l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~------~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~ 137 (302)
T 2yv5_A 66 EERKNL-LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY------FKVEPVIVFNKIDLLNEEEKKE-LERWISI 137 (302)
T ss_dssp CCCSCE-EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH------TTCEEEEEECCGGGCCHHHHHH-HHHHHHH
T ss_pred CChHHH-HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh------CCCCEEEEEEcccCCCccccHH-HHHHHHH
Confidence 455555 5566889999999999999876447666777765432 2389999999999975431111 1111111
Q ss_pred HHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 145 LNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
+.. ..++++++||++|+| +++|++++.
T Consensus 138 ~~~-----------------------------------~g~~~~~~SA~~g~g---i~~L~~~l~ 164 (302)
T 2yv5_A 138 YRD-----------------------------------AGYDVLKVSAKTGEG---IDELVDYLE 164 (302)
T ss_dssp HHH-----------------------------------TTCEEEECCTTTCTT---HHHHHHHTT
T ss_pred HHH-----------------------------------CCCeEEEEECCCCCC---HHHHHhhcc
Confidence 110 115789999999999 999998875
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.5e-10 Score=90.34 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=62.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecC-----------------ceEEEEECCCc
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEK-----------------KNIKIVDLPGE 65 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~G~ 65 (211)
+..+..+++++|++|||||||+|+|++... ...+| |+.++.+.+.+.+ ..+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 445678999999999999999999998664 33444 5566777777775 25899999996
Q ss_pred hh-------hhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 66 DR-------LRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 66 ~~-------~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
.. +.. .+...++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~-~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGN-AFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCH-HHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 32 232 23445678999999999864
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.3e-10 Score=90.41 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc------c--cccccccceeeEEEEecCceEEEEECCCchhhh-------hhhHHH
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK------Y--FESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR-------NKFFDQ 75 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~------~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~ 75 (211)
..+++++|.+|+|||||+|+|.+.. . ....|.++.....+.++. .+.++||||..... .+....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 4689999999999999999999753 1 122233333333444443 48999999974321 111222
Q ss_pred h--hhcCCEEEEEEeCCCc--hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy1914 76 Y--KSSAKGIVYVLDSSTV--QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 76 ~--~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
+ ....+.+++++|+... ...+.. .+. +...+.|+++++||+|..+....+...+.+.+.+..
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~-----l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDY-----VSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EEE-----EESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT
T ss_pred hccccccCceEEEEcCCCEEEEcceEE-----EEE-----ecCCCceEEEEecCccccccccHHHHHHHHHHHhCC
Confidence 2 2457888999988321 110100 111 222348999999999999887777777777776653
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=83.39 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=65.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-----ccccceeeEEEEecCc----eEEEEECCCchhh--------------
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-----CTSLKENVGNFTYEKK----NIKIVDLPGEDRL-------------- 68 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~----~~~i~D~~G~~~~-------------- 68 (211)
++++++|++|+|||||+|.|++-.+... .+........+.++.. .++++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 3599999999999999999998643211 1111111122222322 6899999986321
Q ss_pred hhhhHHHhhh-------------cC--C-EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 69 RNKFFDQYKS-------------SA--K-GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 69 ~~~~~~~~~~-------------~~--d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
.. .+..++. ++ | +++++.|+...-. .....+.+.+. .++|+|+|.||+|.....
T Consensus 123 ~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~---~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 123 DA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK---SLDLVTMKKLD------SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C---HHHHHHHHHTC------SCSEEEEEESCGGGSCHH
T ss_pred HH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC---HHHHHHHHHHh------hCCCEEEEEcchhccchH
Confidence 11 1111111 11 2 3556667654222 22223333332 238999999999998655
Q ss_pred CHHHHHHHHHH
Q psy1914 133 SSSVVKTLLQK 143 (211)
Q Consensus 133 ~~~~~~~~l~~ 143 (211)
+.......+.+
T Consensus 193 E~~~l~~~I~~ 203 (427)
T 2qag_B 193 ELTKFKIKITS 203 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54444444443
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.88 E-value=4e-09 Score=85.67 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=65.7
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQ 142 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~ 142 (211)
..+.|+. ++..+.+.++++++|+|++++.. .....+.+.+ . ++|+++|+||+||.+... .....+.+.
T Consensus 55 ~~e~f~~-~l~~i~~~~~~il~VvD~~d~~~---~~~~~l~~~~-----~--~~p~ilV~NK~DL~~~~~~~~~~~~~l~ 123 (368)
T 3h2y_A 55 TDDDFLR-ILNGIGKSDALVVKIVDIFDFNG---SWLPGLHRFV-----G--NNKVLLVGNKADLIPKSVKHDKVKHWMR 123 (368)
T ss_dssp -CHHHHH-HHHHHHHSCCEEEEEEETTSHHH---HCCTTHHHHS-----S--SSCEEEEEECGGGSCTTSCHHHHHHHHH
T ss_pred CHHHHHH-HHHHHhccCcEEEEEEECCCCcc---cHHHHHHHHh-----C--CCcEEEEEEChhcCCcccCHHHHHHHHH
Confidence 4578888 78888888999999999988532 1222223332 2 389999999999975443 223333332
Q ss_pred HHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 143 KELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...... . .....++.+||++|+| +++|+++|.+
T Consensus 124 ~~~~~~------g--------------------------~~~~~v~~iSA~~g~g---i~~L~~~l~~ 156 (368)
T 3h2y_A 124 YSAKQL------G--------------------------LKPEDVFLISAAKGQG---IAELADAIEY 156 (368)
T ss_dssp HHHHHT------T--------------------------CCCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHHc------C--------------------------CCcccEEEEeCCCCcC---HHHHHhhhhh
Confidence 222210 0 0113678999999999 9999999854
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-08 Score=78.40 Aligned_cols=127 Identities=19% Similarity=0.301 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---------c-ccceeeEEEEecCc----eEEEEECCCchh---------
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---------T-SLKENVGNFTYEKK----NIKIVDLPGEDR--------- 67 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---------~-t~~~~~~~~~~~~~----~~~i~D~~G~~~--------- 67 (211)
.++++++|++|+|||||+|.|++-..+... + +.......+..+.. .++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 368999999999999999999974322111 1 11111111111211 789999998621
Q ss_pred -hhh---hhHHHh--------------hhcCCEEEEEEeCC-CchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 68 -LRN---KFFDQY--------------KSSAKGIVYVLDSS-TVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 68 -~~~---~~~~~~--------------~~~~d~ii~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
... .-+..+ ...+.+.++++|.. .+-...+ .+.+..+ .. . +++++|.||+|.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L-~~-----~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHL-SK-----V-VNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHH-HT-----T-SEEEEEETTGGG
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHH-Hh-----c-CcEEEEEecccc
Confidence 000 000111 11258888889854 2222122 2222332 21 2 799999999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy1914 129 TLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~ 146 (211)
....+.......+.+.+.
T Consensus 153 lt~~e~~~~k~~i~~~l~ 170 (270)
T 3sop_A 153 MTLEEKSEFKQRVRKELE 170 (270)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 876555544444544444
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-07 Score=76.57 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc------cccceeeEEEEecC-ceEEEEECCCchhhhh---hhHHH-hhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC------TSLKENVGNFTYEK-KNIKIVDLPGEDRLRN---KFFDQ-YKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~------~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~---~~~~~-~~~ 78 (211)
....++++|++|||||||+|.+++-..+... +.+......++... ..+.+||++|...... .+... -+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 4458999999999999999999974321111 00100111122221 2689999999642111 01111 123
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+..++ ++...+.. .+..+...+.. .+.|+++|.||.|+.
T Consensus 148 ~~~~~~~-lS~G~~~k----qrv~la~aL~~-----~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK----NDIDIAKAISM-----MKKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSCCCH----HHHHHHHHHHH-----TTCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCCccH----HHHHHHHHHHh-----cCCCeEEEEecCccc
Confidence 3455554 77653222 11222222221 228999999999974
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=83.09 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=65.9
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHH
Q psy1914 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQ 142 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~ 142 (211)
.++.|+. ++..++++++++++|+|++++.... ...+.+.+ . +.|+++|+||+||.+... .....+.+.
T Consensus 57 ~~e~f~~-~L~~~~~~~~lil~VvD~~d~~~s~---~~~l~~~l-----~--~~piilV~NK~DLl~~~~~~~~~~~~l~ 125 (369)
T 3ec1_A 57 DDDDFLS-MLHRIGESKALVVNIVDIFDFNGSF---IPGLPRFA-----A--DNPILLVGNKADLLPRSVKYPKLLRWMR 125 (369)
T ss_dssp --CHHHH-HHHHHHHHCCEEEEEEETTCSGGGC---CSSHHHHC-----T--TSCEEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred CHHHHHH-HHHHhhccCcEEEEEEECCCCCCch---hhHHHHHh-----C--CCCEEEEEEChhcCCCccCHHHHHHHHH
Confidence 4788888 6888888899999999999976422 11222222 2 389999999999976533 233333333
Q ss_pred HHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCC-CcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 143 KELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLY-NQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.. .+ ....++.+||++|.| +++|+++|.+
T Consensus 126 ~~~~~---------------------------------~g~~~~~v~~iSA~~g~g---i~~L~~~I~~ 158 (369)
T 3ec1_A 126 RMAEE---------------------------------LGLCPVDVCLVSAAKGIG---MAKVMEAINR 158 (369)
T ss_dssp HHHHT---------------------------------TTCCCSEEEECBTTTTBT---HHHHHHHHHH
T ss_pred HHHHH---------------------------------cCCCcccEEEEECCCCCC---HHHHHHHHHh
Confidence 22220 01 113678899999999 9999998854
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=79.97 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=59.7
Q ss_pred EEECCCch-hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH
Q psy1914 59 IVDLPGED-RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV 137 (211)
Q Consensus 59 i~D~~G~~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 137 (211)
+-..|||. ....+ ....+..+|+++.|+|+.+|...... .+..++ .. +|.++|+||+||.+.. ..
T Consensus 3 i~w~PGhm~ka~~~-~~~~l~~aDvVl~VvDAr~p~~~~~~---~l~~~l-----~~--kp~ilVlNK~DL~~~~---~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARRE-VTEKLKLIDIVYELVDARIPMSSRNP---MIEDIL-----KN--KPRIMLLNKADKADAA---VT 68 (282)
T ss_dssp ------CTTHHHHH-HHHHGGGCSEEEEEEETTSTTTTSCH---HHHHHC-----SS--SCEEEEEECGGGSCHH---HH
T ss_pred CcCCchHHHHHHHH-HHHHHhhCCEEEEEEeCCCCCccCCH---HHHHHH-----CC--CCEEEEEECcccCCHH---HH
Confidence 44579986 34443 45567789999999999987653321 122332 22 8999999999997521 11
Q ss_pred HHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 138 KTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+.+. ....+++.+||++|.| +++|+++|.+
T Consensus 69 -~~~~~~~~-----------------------------------~~g~~~i~iSA~~~~g---i~~L~~~i~~ 102 (282)
T 1puj_A 69 -QQWKEHFE-----------------------------------NQGIRSLSINSVNGQG---LNQIVPASKE 102 (282)
T ss_dssp -HHHHHHHH-----------------------------------TTTCCEEECCTTTCTT---GGGHHHHHHH
T ss_pred -HHHHHHHH-----------------------------------hcCCcEEEEECCCccc---HHHHHHHHHH
Confidence 11111111 0014668899999999 9999887754
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.2e-08 Score=77.50 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=37.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCceEEEEECCCch
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
...++++++|.+|||||||+|+|.+....... |.++.....+.. +..+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 45689999999999999999999987643222 322222222333 4479999999974
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-08 Score=78.81 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=36.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccce--eeEEEEecCceEEEEECCCchh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKE--NVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
++++++|.+|+|||||+|+|.+.......++.+. ....+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 6999999999999999999998765433332222 2222332 34789999999754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-08 Score=76.66 Aligned_cols=94 Identities=15% Similarity=0.022 Sum_probs=55.1
Q ss_pred CCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHH
Q psy1914 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLL 141 (211)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l 141 (211)
.|||...........+.++|+++.|+|+.+|....... +. + . ++|.++|+||+||.+... . +..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~---l~-l-----l---~k~~iivlNK~DL~~~~~---~-~~~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG---VD-F-----S---RKETIILLNKVDIADEKT---T-KKW 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT---SC-C-----T---TSEEEEEEECGGGSCHHH---H-HHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH---HH-h-----c---CCCcEEEEECccCCCHHH---H-HHH
Confidence 58875322112455677899999999999876522110 01 1 1 389999999999975321 1 111
Q ss_pred HHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 142 QKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.. .+ .++ .+||++|.| +++|+++|.+
T Consensus 68 ~~~~~~---------------------------------~g--~~v-~iSa~~~~g---i~~L~~~l~~ 97 (262)
T 3cnl_A 68 VEFFKK---------------------------------QG--KRV-ITTHKGEPR---KVLLKKLSFD 97 (262)
T ss_dssp HHHHHH---------------------------------TT--CCE-EECCTTSCH---HHHHHHHCCC
T ss_pred HHHHHH---------------------------------cC--CeE-EEECCCCcC---HHHHHHHHHH
Confidence 111210 00 344 789999999 9999998764
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-07 Score=79.12 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=41.6
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccc-ceeeEEEEe-------cCceEEEEECCCchh
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSL-KENVGNFTY-------EKKNIKIVDLPGEDR 67 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~-~~~~~~~~~-------~~~~~~i~D~~G~~~ 67 (211)
.....+..+|+++|.+|+|||||+|+|.+....-.. .|+ +...+.+.+ .+..+.++||||...
T Consensus 32 ~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 32 SAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp HTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred HhccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 334456688999999999999999999987632122 111 112222222 345899999999753
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.35 E-value=5.5e-07 Score=74.50 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc------c--cc-c---------------------ccc--ccee---e--EEE-Ee
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK------Y--FE-S---------------------CTS--LKEN---V--GNF-TY 52 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~------~--~~-~---------------------~~t--~~~~---~--~~~-~~ 52 (211)
...|+++|++||||||+++.|...- . .. + ++. .+.+ . ..+ .+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998521 1 00 0 000 0000 0 000 12
Q ss_pred cCceEEEEECCCchhhhhhhHHH---h--hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCC-c-EEEEEeC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQ---Y--KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRV-N-ILVCCNK 125 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~---~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~iiv~nK 125 (211)
++..+.++||||.......+... . ...+|.+++|+|+..... .......+.. .+ | ..+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~----~~~~~~~~~~-------~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ----AGIQAKAFKE-------AVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG----HHHHHHHHHT-------TSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH----HHHHHHHHhh-------cccCCeEEEEeC
Confidence 44589999999975432211111 1 125899999999976433 1122222211 14 5 7899999
Q ss_pred CCccC
Q psy1914 126 QDQTL 130 (211)
Q Consensus 126 ~Dl~~ 130 (211)
+|...
T Consensus 248 ~D~~~ 252 (432)
T 2v3c_C 248 LDGSA 252 (432)
T ss_dssp SSSCS
T ss_pred CCCcc
Confidence 99853
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-06 Score=74.33 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
..++++|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999854
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-06 Score=70.43 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc------Ccc---c-ccc-c-----------ccceeeEEE-----------------
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY------SKY---F-ESC-T-----------SLKENVGNF----------------- 50 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~------~~~---~-~~~-~-----------t~~~~~~~~----------------- 50 (211)
+...|+++|++||||||++..|.. .+. . ..+ + ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999873 111 0 000 0 001000000
Q ss_pred EecCceEEEEECCCchhhhhh----hHH-HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy1914 51 TYEKKNIKIVDLPGEDRLRNK----FFD-QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~----~~~-~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
..++..+.++||||....... +.. .....+|.+++|+|++........+ ..+.. . -.+..+|+||
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a-~~f~~---~------~~i~gVIlTK 248 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA-LAFKE---A------TPIGSIIVTK 248 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHHHH---S------CTTEEEEEEC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH-HHHHh---h------CCCeEEEEEC
Confidence 012347999999995321110 111 1123589999999998754422222 22222 1 0356789999
Q ss_pred CCccC
Q psy1914 126 QDQTL 130 (211)
Q Consensus 126 ~Dl~~ 130 (211)
.|...
T Consensus 249 lD~~~ 253 (443)
T 3dm5_A 249 LDGSA 253 (443)
T ss_dssp CSSCS
T ss_pred CCCcc
Confidence 99864
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-05 Score=64.02 Aligned_cols=110 Identities=25% Similarity=0.256 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc------Ccc--cc--cc------------cccceeeEE-----------------E
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY------SKY--FE--SC------------TSLKENVGN-----------------F 50 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~------~~~--~~--~~------------~t~~~~~~~-----------------~ 50 (211)
+...|+++|++||||||++..|.. .+. .. .+ ...+..... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 356789999999999999999873 111 00 00 000110000 0
Q ss_pred EecCceEEEEECCCchh------hhhhhHHH-hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEE
Q psy1914 51 TYEKKNIKIVDLPGEDR------LRNKFFDQ-YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCC 123 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~------~~~~~~~~-~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 123 (211)
..++..+.++||||... +..++... -.-.++.+++|+|+...+.... ....+...+ .+..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~-~a~~f~~~~---------~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD-LASRFHQAS---------PIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH-HHHHHHHHC---------SSEEEEE
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH-HHHHHhccc---------CCcEEEE
Confidence 01234788999999533 11111110 0124699999999987544232 223333321 4578899
Q ss_pred eCCCcc
Q psy1914 124 NKQDQT 129 (211)
Q Consensus 124 nK~Dl~ 129 (211)
||.|..
T Consensus 246 TKlD~~ 251 (433)
T 3kl4_A 246 TKMDGT 251 (433)
T ss_dssp ECGGGC
T ss_pred eccccc
Confidence 999986
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.3e-06 Score=66.67 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=36.6
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
....++|.+++|+|+.+|..+...+.+++..... .++|.++|+||+||.+.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~------~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------NDIQPIICITKMDLIED 132 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------TTCEEEEEEECGGGCCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECCccCch
Confidence 3467899999999998776655544444433321 23899999999999765
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=63.05 Aligned_cols=108 Identities=23% Similarity=0.230 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc------Cccc---cc-c-cc-----------cceeeE--------------EE-Ee-
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY------SKYF---ES-C-TS-----------LKENVG--------------NF-TY- 52 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~------~~~~---~~-~-~t-----------~~~~~~--------------~~-~~- 52 (211)
...++++|++|+||||++..|.. ++.. .. + +. .+.... .+ ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999873 1210 00 0 00 000000 00 01
Q ss_pred -cCceEEEEECCCchh--hhhhhHH-----HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEE
Q psy1914 53 -EKKNIKIVDLPGEDR--LRNKFFD-----QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCC 123 (211)
Q Consensus 53 -~~~~~~i~D~~G~~~--~~~~~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~ 123 (211)
++..+.++||||... ....+.. .....+|.+++|+|+......+.. ...+.. . .| ..+|+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----~~~~~~-----~--~~i~gvVl 246 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL----ASKFNQ-----A--SKIGTIII 246 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHH-----T--CTTEEEEE
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHH----HHHHHh-----h--CCCCEEEE
Confidence 334799999999765 3221221 123458999999999754332222 222221 1 45 77899
Q ss_pred eCCCcc
Q psy1914 124 NKQDQT 129 (211)
Q Consensus 124 nK~Dl~ 129 (211)
||.|..
T Consensus 247 nk~D~~ 252 (297)
T 1j8m_F 247 TKMDGT 252 (297)
T ss_dssp ECGGGC
T ss_pred eCCCCC
Confidence 999975
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.80 E-value=5.6e-06 Score=69.26 Aligned_cols=84 Identities=23% Similarity=0.350 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEE--EecC--ceEEEEECCCchh--hhhhhH--------H
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNF--TYEK--KNIKIVDLPGEDR--LRNKFF--------D 74 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~--~~~~--~~~~i~D~~G~~~--~~~~~~--------~ 74 (211)
.....|+++|.+||||||+.++|.........++..++...+ ...+ ....+||..|... .+. .+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re-~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRK-QCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHH-HHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 346789999999999999999998643222222222221111 0011 2345789999732 333 22 4
Q ss_pred HhhhcCCEEEEEEeCCCch
Q psy1914 75 QYKSSAKGIVYVLDSSTVQ 93 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~ 93 (211)
.++..+.+.++|+|+++..
T Consensus 116 ~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS
T ss_pred HHHHhCCCCEEEEeCCCCC
Confidence 4566678889999998853
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.74 E-value=7.6e-05 Score=58.86 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 455899999999999999999984
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=60.69 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=38.4
Q ss_pred CceEEEEECCCchhhhhhhHHH-----hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCC
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQ-----YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQD 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~-----~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D 127 (211)
+..+.++||||........... ....++.+++|+|+.........+ ..+..- ++ .-+|+||.|
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~-~~f~~~----------l~i~gvVlnK~D 251 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTA-KAFNEA----------LPLTGVVLTKVD 251 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHH-HHHHHH----------SCCCCEEEECTT
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHH-HHHhcc----------CCCeEEEEecCC
Confidence 4489999999974332111111 133589999999997654322222 111111 33 346899999
Q ss_pred ccCC
Q psy1914 128 QTLA 131 (211)
Q Consensus 128 l~~~ 131 (211)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.67 E-value=6.9e-05 Score=60.32 Aligned_cols=48 Identities=21% Similarity=0.114 Sum_probs=31.1
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..++|.+++| |+.+|..+...+.+++..... . ++|.++|+||+||.+.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~----~--~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCET----L--QVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHH----H--TCEEEEEEECGGGCCH
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHh----c--CCCEEEEEECccCCCc
Confidence 4678988876 555666545444444433221 1 2788999999999754
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=4.3e-05 Score=60.91 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+.--++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999985
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.65 E-value=3.9e-05 Score=64.14 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345789999999999999999875
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00011 Score=60.90 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+-.-|+|+|++++|||+|+|+|.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3445689999999999999999986
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00011 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++++|++||||||++..|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999863
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00021 Score=56.41 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++||||||++..|..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34688999999999999999874
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.44 E-value=8.3e-05 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+++++|++|||||||++.+++-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999863
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=9.9e-05 Score=54.39 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++|||||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999986
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00013 Score=55.47 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=21.4
Q ss_pred eccccCCCCEEEEEcCCCCCHHHHHHHHH
Q psy1914 4 FKFRKSSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 4 ~~~~~~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
|..+..+...|+++|++||||||+++.|.
T Consensus 20 ~~~~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 20 FQSMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ------CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 33444455789999999999999999998
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00015 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+-.++++|++|||||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999863
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00034 Score=57.62 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++|+||||++..|..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688899999999999999874
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.001 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++|+||||++..|..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999998874
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00021 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00028 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.--++++|++|||||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999863
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00022 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.--++++|++|||||||++.+.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999999863
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00029 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|++||||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999999874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|++|||||||++.+.+-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999999863
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00034 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.--|+++|++|||||||+++|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3457899999999999999999863
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00038 Score=51.56 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.+..-|+++|++|||||||++.|....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345568999999999999999998643
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00037 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.--++++|++|||||||++.+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 446899999999999999999864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00035 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++|||||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999886
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00027 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++|||||||++.+..
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 34589999999999999997553
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00037 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|+++||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999853
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00047 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+...++++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999998643
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00033 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 446899999999999999999863
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00046 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00041 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.252 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999863
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00049 Score=48.84 Aligned_cols=26 Identities=27% Similarity=0.223 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.-.++++|+.|||||||++.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468999999999999999998744
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00052 Score=55.22 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY 36 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~ 36 (211)
.-.++++|++|||||||+|.|.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34789999999999999999997543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00051 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|+.|||||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00055 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..-|+++|++||||||++++|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999975
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00067 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00054 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|+.|||||||++.+++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999864
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00076 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00074 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00052 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00054 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999863
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00058 Score=49.54 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00054 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999864
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0007 Score=48.04 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q psy1914 12 KVVLLSGLSLSGKTLLFARL 31 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l 31 (211)
+-|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00061 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00061 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00073 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00084 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++...|+++|++||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999875
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00075 Score=47.92 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|+++|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00058 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|+.|||||||++.+.+-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00066 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|+.|||||||++.+.+-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00081 Score=52.93 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++-.++|+|++|||||||++.|.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3456799999999999999999884
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00066 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 346899999999999999999873
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00058 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|+.|||||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00082 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|++|||||||++.+.+-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00083 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++-.++++|++|||||||++.+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 344789999999999999999986
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00066 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00074 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.-.++++|+.|||||||++.+.+-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3446899999999999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00083 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999974
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00088 Score=49.63 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00085 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+++-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999974
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00069 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00084 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
.+...|+++|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 455789999999999999999998
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00089 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00092 Score=49.06 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++||||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00078 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999864
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.001 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0012 Score=48.31 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
......|+++|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999875
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0008 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.283 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999864
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00089 Score=52.91 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+...|+|+|++|||||||++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567899999999999999999875
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.024 Score=41.20 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=42.0
Q ss_pred ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++|+|+.... .....+..+|.+++++..+... ..+...+..+..... ..++.++.+|+|+.|..
T Consensus 76 yD~viiD~~~~~~~---~~~~~l~~ad~viiv~~~~~~~---~~~~~~~~~l~~~~~-~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSLSV---ITSAAVMVSDLVIIPVTPSPLD---FSAAGSVVTVLEAQA-YSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSSSH---HHHHHHHHCSEEEEEECSCTTT---HHHHHHHHHHHTTSC-GGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCCCH---HHHHHHHHCCEEEEEecCCHHH---HHHHHHHHHHHHHHH-hCCCCcEEEEEeccCCC
Confidence 37999999987632 2344556699999999875422 333333333322111 12347889999999854
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00098 Score=49.42 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00095 Score=50.69 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999876
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00087 Score=48.33 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-..++++|++|||||||++++...- +..+.....+......+ -+|.+|...++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l-----~~~g~~v~~i~~~~~~~-~id~~g~Ds~~ 58 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL-----CARGIRPGLIKHTHHDM-DVDKPGKDSYE 58 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH-----HHTTCCEEEEEECCC-------------C
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc-----cccCCceeEEeeCCCcc-ccCCCCCceEE
Confidence 3568999999999999999998631 11233345555544433 24666665444
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.001 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|++|||||||++.+.+-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 447899999999999999999864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0009 Score=51.25 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0011 Score=48.43 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999975
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00094 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0013 Score=47.58 Aligned_cols=25 Identities=44% Similarity=0.477 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|.+||||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00033 Score=55.19 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-.++++|++|||||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4589999999999999999998643
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-.++++|++|||||||+|.+.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3468999999999999999998744
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00076 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|++|+|||+|++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998863
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=51.20 Aligned_cols=24 Identities=38% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00047 Score=49.61 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.++++|++|||||||++.+.+-. +..+...+.+.+++..+.-+|.++...++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~-----~~~g~~~G~I~~dg~~i~~~~~~~~d~~r 55 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL-----RERGLRVAVVKRHAHGDFEIDKEGKDSWK 55 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH-----HHTTCCEEEEEC------------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----hhcCCceEEEEEcCcccccCCccchhHHH
Confidence 68999999999999999998622 12233456677776654445555555554
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=47.90 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00068 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=16.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH-cC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLV-YS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~-~~ 34 (211)
.--++++|++|||||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 53
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0014 Score=48.33 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+...|+++|++||||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999874
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0013 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.=.++++|+.|||||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999998754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0013 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-.++++|++|||||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3578999999999999999998 44
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0015 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-|+++|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=50.33 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+..+|+++|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0017 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+...|+++|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=49.46 Aligned_cols=24 Identities=33% Similarity=0.228 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.--++++|++|||||||++.+++
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0016 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+...|++.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0013 Score=47.46 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=-++++|++|||||||++.+.+-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 45799999999999999999874
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00099 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-+++++|++|||||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999863
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0018 Score=47.00 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0015 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.182 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0015 Score=47.97 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0016 Score=50.89 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+...|+|+|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0014 Score=48.09 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0016 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0018 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0017 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-.++++|++|||||||++.+++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999975
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0019 Score=47.57 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 346899999999999999999863
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.001 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999863
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00099 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.=.++++|++|||||||++.+.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 445799999999999999999886
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0018 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.260 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|++|||||||++.+.+-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36799999999999999999864
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0017 Score=51.40 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+-|+++|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998864
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0018 Score=51.06 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999876
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0021 Score=46.11 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..++++|++|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0019 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999999974
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=46.80 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|||||||++.+.+-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3447899999999999999999864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 346799999999999999999874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=52.82 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.=-++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3468999999999999999998743
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.192 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 346899999999999999999874
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0019 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999874
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0021 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+-.++++|++|||||||++.+.+-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4457999999999999999999874
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|++|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 35799999999999999999864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0018 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 346799999999999999999863
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=46.32 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999875
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0022 Score=46.73 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..+...|+++|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999999864
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0022 Score=50.05 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...-|++.|++||||||+.++|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0026 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|++.|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999974
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0027 Score=47.70 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999874
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=50.02 Aligned_cols=21 Identities=43% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-++++|++|+|||+|++.+.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 399999999999999999986
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0024 Score=45.80 Aligned_cols=24 Identities=38% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999976
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0016 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+-.++++|++|||||||++.+.+-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999863
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0022 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++-.++++|++||||||+++.+.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344699999999999999999986
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0021 Score=48.94 Aligned_cols=21 Identities=38% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++++|++|+|||+|++.+.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999986
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0026 Score=47.50 Aligned_cols=22 Identities=23% Similarity=0.031 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0029 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0023 Score=48.93 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999974
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0027 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0022 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.=.++++|++|||||||++.+.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 34689999999999999999986
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=52.80 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++--++++|++||||||+++.+++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 344689999999999999999986
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0015 Score=52.46 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 346899999999999999999864
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0027 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 44789999999999999999985
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.15 Score=37.34 Aligned_cols=65 Identities=5% Similarity=-0.010 Sum_probs=42.1
Q ss_pred eEEEEECCCc-hhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 56 NIKIVDLPGE-DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 56 ~~~i~D~~G~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+.++|+|+. .... ....+..+|.+|+++..+. . .+..+...+..+... .+ .++.+|+|+.|-..
T Consensus 69 D~viiD~p~~~~~~~---~~~~l~~aD~viiv~~~~~-~-~~~~~~~~~~~l~~~---~~--~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 69 QNIVIDTQARPEDED---LEALADGCDLLVIPSTPDA-L-ALDALMLTIETLQKL---GN--NRFRILLTIIPPYP 134 (209)
T ss_dssp SEEEEEEECCCSSSH---HHHHHHTSSEEEEEECSSH-H-HHHHHHHHHHHHHHT---CS--SSEEEEECSBCCTT
T ss_pred CEEEEeCCCCcCcHH---HHHHHHHCCEEEEEecCCc-h-hHHHHHHHHHHHHhc---cC--CCEEEEEEecCCcc
Confidence 7899999987 4322 3345567999999998754 2 244454444443321 12 67889999998653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0035 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998763
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0029 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.00095 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999875
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.002 Score=48.36 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+..-|++.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0035 Score=45.18 Aligned_cols=22 Identities=36% Similarity=0.332 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0034 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+.+.|++.|++||||||+.+.|..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999874
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=45.43 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999864
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0026 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..++++|++||||||+++.+++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999999986
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0028 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-+++++|+.|||||||++.|++
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999986
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0022 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0029 Score=45.50 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999875
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=16.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0038 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+..-|++.|++||||||++++|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567799999999999999999975
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0031 Score=48.71 Aligned_cols=21 Identities=38% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++++|++|+|||||++.+.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 399999999999999999986
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0031 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++|+|||||+..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999984
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0037 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0015 Score=52.58 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999864
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0031 Score=50.19 Aligned_cols=23 Identities=35% Similarity=0.290 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999863
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0037 Score=44.33 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0046 Score=48.04 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||++++.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3456899999999999999999986
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0036 Score=50.17 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=+++++|++|+|||||++.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999874
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0042 Score=47.25 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999875
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0043 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++++|++||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 344789999999999999999985
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.004 Score=43.58 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy1914 13 VVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~ 32 (211)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999986
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0049 Score=45.49 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999875
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0042 Score=47.42 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.|+++|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0054 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=19.1
Q ss_pred CCE-EEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKV-VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~k-i~i~G~~~~GKSsli~~l~~ 33 (211)
+.| |+++|+|||||+|...+|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 444 56789999999999999985
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0042 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
....+++.|++|+|||+++..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999998753
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0032 Score=49.78 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-++++|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999964
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0055 Score=47.54 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....|+++|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999973
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0042 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++|+|||||+..+.+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 34688999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0058 Score=45.52 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....+++.|++|+|||+|+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0059 Score=46.41 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...++++|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999986
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0058 Score=46.00 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+++++++|++||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.003 Score=49.35 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=18.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+.+.|+|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0058 Score=46.21 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=21.6
Q ss_pred eeccccCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 3 ~~~~~~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++.....+..-|++.|++||||||+++.|..
T Consensus 19 ~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 19 YFQSNAMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -------CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444455667899999999999999999874
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0051 Score=44.93 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999885
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0052 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|||||||++.+.+-
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0062 Score=43.07 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0051 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.091 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=+++++|++|||||||++.+.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999874
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0051 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999986
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0052 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.--++++|++|+|||||+..++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 445689999999999999999987
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0049 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-.++++|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999985
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0057 Score=52.43 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++-.++++|++|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3457999999999999999999863
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0053 Score=44.90 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+..|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999753
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0072 Score=47.73 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
......+++.|++|+|||+|+.++..
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34456799999999999999999975
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0069 Score=49.08 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999985
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0067 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+=.++++|++|||||||++.+.+-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 447899999999999999999864
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0061 Score=49.16 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy1914 13 VVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~ 32 (211)
-.+|+|+.|||||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999987
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0081 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0059 Score=45.12 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+-.+++.||+|+|||+++.++..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999888875
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0083 Score=46.80 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...-+++.|++|+|||+|..++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999985
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.012 Score=40.63 Aligned_cols=27 Identities=19% Similarity=0.039 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.....|++.|++|+|||++...+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 445679999999999999999997643
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0057 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|||||||++.+.+-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3446899999999999999999874
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0069 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|+++|++||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0093 Score=46.47 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455799999999999999987764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0091 Score=47.24 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...+++.|++|+|||+|++++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 3446799999999999999999986
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0089 Score=46.06 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||+|++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999975
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0068 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|+|||||++.+.+-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4457899999999999999999873
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0093 Score=43.84 Aligned_cols=25 Identities=32% Similarity=0.178 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
...|+|+|++|+|||+|...|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998643
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.01 Score=45.00 Aligned_cols=24 Identities=38% Similarity=0.308 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....+++.|++|+|||+++..+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999976
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0078 Score=44.01 Aligned_cols=21 Identities=33% Similarity=0.290 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999875
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0077 Score=44.60 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0084 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|||||||++.+.+-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999743
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0069 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++=.++++|++|||||||++.+.+-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3458999999999999999998863
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0078 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|+|||||++.+.+-
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4457899999999999999999864
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0053 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++...|++.|..||||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0083 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.011 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
...++++|++|+|||+++..+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999998763
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.011 Score=46.10 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||+|++.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3455799999999999999999986
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.01 Score=43.28 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0089 Score=46.13 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.--++++|++|+|||||+..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445689999999999999999885
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.012 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.011 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|+++|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0098 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.=.++++|+.|+|||||++.+.+-.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999999743
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0057 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++=.++++|++|||||||++.+.+-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3457899999999999999988763
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.013 Score=47.05 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
......+++.|++|+|||+|+..+..
T Consensus 114 ~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 114 RGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999999975
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.01 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
.++.+|++++|...|||||+++++.
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 3567899999999999999999875
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0092 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999999886
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.012 Score=47.27 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....|++.|++|+|||+|+..+..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Confidence 3445699999999999999999986
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.035 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
+-.-|+|+|+.++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44566799999999999999654
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0079 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|++|||||||++.+.+-
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999988763
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.013 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-|+|+||+|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999999853
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.011 Score=46.95 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999876
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.012 Score=43.36 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy1914 13 VVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~ 32 (211)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999985
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.012 Score=44.01 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++|+|||+|+.+++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999887764
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=47.23 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999886
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.013 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.++++|+.|||||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.012 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999999875
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.014 Score=44.81 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||+++..+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999986
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.015 Score=43.82 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|++.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.016 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999975
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.017 Score=47.67 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+....|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3456799999999999999999986
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.016 Score=44.48 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++--|++.||+|+|||.|..++..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3445699999999999999999986
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.015 Score=45.17 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....+++.|++|+|||+++..+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+++.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998853
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.013 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+++.|++|+||||++..+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=46.77 Aligned_cols=25 Identities=32% Similarity=0.201 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.--+.++|++|+|||||+..++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999863
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.018 Score=47.34 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....-|++.||||+|||+|++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999999986
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.009 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...++++|++|||||||++.|.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 456799999999999999999986
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.016 Score=52.51 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY 36 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~ 36 (211)
++=.++++|+.|||||||++.+.++..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 344789999999999999999996543
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.019 Score=46.50 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||+|+..+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999975
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.016 Score=42.73 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.02 Score=45.03 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-|+|+|++|||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578899999999999999985
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.016 Score=43.58 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..-|++.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.02 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+++.|++|+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.02 Score=47.25 Aligned_cols=25 Identities=40% Similarity=0.377 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....-|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4456899999999999999999986
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.0097 Score=41.08 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....|++.|++|+|||++...+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 445699999999999999998865
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.018 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+++.|++|+|||+++..+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.02 Score=47.73 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.....++++|++|+|||+++..+...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999998753
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.021 Score=47.20 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.....+++.|++|+|||+|+..+...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999863
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.02 Score=41.12 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..-|++.|++|+||||+.-.|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 346899999999999999999864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.011 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+++=+|+++|++|||||||++.|.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.0029 Score=47.60 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
++++|++|||||||++.+++
T Consensus 30 ~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46889999999999999986
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 211 | ||||
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-29 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 3e-23 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 4e-06 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 3e-05 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 1e-04 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 2e-04 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 4e-04 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 7e-04 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 8e-04 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 8e-04 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 0.001 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 0.001 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.001 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 0.002 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 0.002 |
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 107 bits (266), Expect = 1e-29
Identities = 70/203 (34%), Positives = 119/203 (58%), Gaps = 6/203 (2%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEK---KNIKIVDLPGEDRL 68
+ VL GL SGKTLLF RL+ +Y ++ TS+ ++ + ++ ++DLPG + L
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128
R + D++KSSA+ +V+V+DS+ Q+ ++DVAE LY +L D + ++L+ CNKQD
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120
Query: 129 TLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFC 188
+AKS+ +++ L+KELN +R T+S + + LG K+FEFS L +V F
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL 180
Query: 189 DTTGLDSASE---YDVEQLQDWM 208
+ + + D++ L+ W+
Sbjct: 181 ECSAKGGRGDTGSADIQDLEKWL 203
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.5 bits (223), Expect = 3e-23
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 15/210 (7%)
Query: 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRL 68
S Q ++++G SGKT L L + S + + Y+ + +VD PG +L
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKL 59
Query: 69 RNKFFDQYKSSA---KGIVYVLDSSTVQKTLRDVAESLY-VILADPQVQSSRVNILVCCN 124
R K D K+ A KG+++++DS+ K L AE L ++ + ++IL+ CN
Sbjct: 60 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119
Query: 125 KQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED------TNDVAANQTFLGNPDKDFEF 178
K + A+ S +K L+ E+ V + L + D A N + F+F
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKF 179
Query: 179 SDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208
++L V + S ++ + Q ++W+
Sbjct: 180 ANLEASVVAFE----GSINKRKISQWREWI 205
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 43.4 bits (101), Expect = 4e-06
Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGE 65
F ++++L GL +GKT + +L + + ++ NV TY+ + D+ G+
Sbjct: 8 FGNKEMRILML-GLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 66
Query: 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125
D++R + Y + +G+++V+D + + + + L+ I+ D +++ IL+ NK
Sbjct: 67 DKIRP-LWRHYYTGTQGLIFVVD-CADRDRIDEARQELHRIINDREMRD--AIILIFANK 122
Query: 126 QDQTLAKSSSVVKTLLQKEL 145
QD A ++ L
Sbjct: 123 QDLPDAMKPHEIQEKLGLTR 142
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (95), Expect = 3e-05
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKE---NVGNFTYEKKNIK--IVDLPGED 66
K++L+ G S GKT + R + + S + + K IK I D G++
Sbjct: 8 KLLLI-GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
R R Y A GI+ V D T +K+ ++ + I ++ + C+
Sbjct: 67 RFRT-ITTAYYRGAMGIMLVYD-ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 127 DQ 128
D+
Sbjct: 125 DK 126
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.0 bits (90), Expect = 1e-04
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS---LKENVGNFTYEKKNIK--IVDLPGED 66
K++L+ G S GK+ L R V K+ S + + + K +K I D G++
Sbjct: 4 KILLI-GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSS 90
R R Y A GI+ V D +
Sbjct: 63 RFRT-ITTAYYRGAMGIILVYDIT 85
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 38.1 bits (87), Expect = 2e-04
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 5/142 (3%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDL 62
F K + K+V L GL +GKT L L + + +L T DL
Sbjct: 6 FLGLYKKTGKLVFL-GLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 64
Query: 63 PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122
G + + + Y + GIV+++D + ++ L E + + V IL+
Sbjct: 65 GGHIQ-ARRVWKNYLPAINGIVFLVDCADHERLLESKEE---LDSLMTDETIANVPILIL 120
Query: 123 CNKQDQTLAKSSSVVKTLLQKE 144
NK D+ A S ++ +
Sbjct: 121 GNKIDRPEAISEERLREMFGLY 142
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.2 bits (85), Expect = 4e-04
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-----NFTYEKKNIKIVDLPGED 66
K++++ G S GKT R + + S ++ ++I D G++
Sbjct: 7 KILII-GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 67 RLRNKFFDQYKSSAKGIVYVLD 88
R R Y A G + + D
Sbjct: 66 RYR-TITTAYYRGAMGFILMYD 86
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 36.6 bits (83), Expect = 7e-04
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
+++++ GL +GKT + +L + + ++ NV Y+ + + D+ G+D++R
Sbjct: 2 RILMV-GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 72 FFDQYKSSAKGIVYV 86
+ ++++ I V
Sbjct: 61 WRHYFQNTQGLIFVV 75
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 36.5 bits (83), Expect = 8e-04
Identities = 25/144 (17%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
++ F KV+++ GL +GKT + + ++ + ++ NV + D
Sbjct: 7 IWRLFNHQEHKVIIV-GLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWD 65
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G++ LR+ ++ Y ++ + ++ V+DS+ + R + + +L+
Sbjct: 66 IGGQESLRS-SWNTYYTNTEFVIVVVDSTDRE---RISVTREELYKMLAHEDLRKAGLLI 121
Query: 122 CCNKQDQTLAKSSSVVKTLLQKEL 145
NKQD + + + L+
Sbjct: 122 FANKQDVKECMTVAEISQFLKLTS 145
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 8e-04
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-----NFTYEKKNIKIVDLPGED 66
K++++ G S GK+ L R + + + K + I D G++
Sbjct: 9 KILII-GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSS 90
R R Y A+G++ V D +
Sbjct: 68 RFRT-LTPSYYRGAQGVILVYDVT 90
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 36.5 bits (83), Expect = 0.001
Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 8/147 (5%)
Query: 2 LFFKFRKSSQ---KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIK 58
+ K + + +++LL GL +GKT L +L + N+ + + +
Sbjct: 5 ILRKLKSAPDQEVRILLL-GLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLN 63
Query: 59 IVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN 118
+ D+ G+ ++R + ++++ ++YV+D R + + + S V
Sbjct: 64 VWDIGGQRKIRPYWRSYFENT-DILIYVID---SADRKRFEETGQELTELLEEEKLSCVP 119
Query: 119 ILVCCNKQDQTLAKSSSVVKTLLQKEL 145
+L+ NKQD A +S + L
Sbjct: 120 VLIFANKQDLLTAAPASEIAEGLNLHT 146
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 36.1 bits (82), Expect = 0.001
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 2 LFFKFRKSSQKV-VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
+F K S++++ +L+ GL +GKT + RL + + ++ NV +Y+ + +
Sbjct: 7 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVW 66
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89
DL G+ +R ++ Y + +++V+DS
Sbjct: 67 DLGGQTSIRP-YWRCYYADTAAVIFVVDS 94
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.0 bits (82), Expect = 0.001
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS---LKENVGNFTYEKKNIK--IVDLPGED 66
K++L+ G S GK+ L R Y S + + + K +K I D G++
Sbjct: 8 KLLLI-GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSS 90
R R Y + GI+ V D +
Sbjct: 67 RFRT-ITSSYYRGSHGIIIVYDVT 89
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.3 bits (80), Expect = 0.002
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 1/116 (0%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
KVV+L G GK+ L + V + E E+ E + V + +
Sbjct: 5 KVVVL-GSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127
F K + ++ + +V +++ NK D
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.3 bits (80), Expect = 0.002
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-----CTSLKENVGNFTYEKKNIKIVDLPGED 66
K +++ G + +GK+ L + + K+ + + N + ++I D G++
Sbjct: 7 KFLVI-GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65
Query: 67 RLRNKFFDQYKSSAKGIVYVLDS 89
R R+ Y A G + V D
Sbjct: 66 RFRS-VTRSYYRGAAGALLVYDI 87
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 211 | |||
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.98 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.97 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.97 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.97 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.97 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.96 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.96 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.96 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.96 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.96 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.96 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.96 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.95 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.95 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.95 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.93 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.92 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.92 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.92 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.9 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.9 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.9 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.9 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.89 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.88 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.88 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.88 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.88 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.87 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.87 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.87 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.86 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.82 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.81 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.79 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.77 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.77 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.75 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.75 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.73 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.72 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.57 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.57 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.55 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.52 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.47 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.34 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.16 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.15 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.1 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.05 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.05 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.77 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.46 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.4 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.39 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.27 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.27 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.22 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.19 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.14 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.11 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.08 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.08 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.82 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.63 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.63 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.59 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.56 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.48 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.48 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.41 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.37 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.35 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.35 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.3 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.29 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.29 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.27 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.24 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.23 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.2 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.2 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.18 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.18 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.13 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.11 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.11 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.1 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.05 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.04 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.03 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.02 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.01 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.01 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.0 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.99 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 96.98 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.98 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.98 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.94 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 96.94 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.93 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 96.92 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.91 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.9 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.89 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.88 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 96.85 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.85 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.84 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.84 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.83 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.82 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.82 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.8 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.79 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.78 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.76 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.75 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.74 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.74 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.73 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.72 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.71 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.69 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.68 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.68 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.62 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.61 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.59 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.58 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.56 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.54 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.52 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.42 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.37 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.29 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.29 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.28 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.23 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.06 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.98 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.97 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.96 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.92 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.9 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.87 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.85 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.84 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.83 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.83 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.81 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.79 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.79 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.72 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.7 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.61 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.43 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.41 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.34 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.34 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.23 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.19 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.15 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.13 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.09 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.09 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.07 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.05 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.98 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.91 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.9 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.83 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 94.67 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.63 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.61 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.57 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.53 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.53 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.41 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 94.26 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.22 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.21 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.1 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.07 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.05 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.05 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.84 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 93.82 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 93.77 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.66 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 93.52 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.49 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.44 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.4 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.33 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 93.32 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.93 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.81 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.23 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.01 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.94 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.9 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 91.73 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 90.94 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.53 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.24 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 88.77 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.98 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.96 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.85 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.17 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 87.14 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 87.05 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.48 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 86.45 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 86.27 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.97 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 85.66 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 84.87 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 83.57 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.64 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 82.45 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 81.35 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 81.03 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 80.6 |
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=1.4e-33 Score=206.02 Aligned_cols=163 Identities=20% Similarity=0.330 Sum_probs=135.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+.+++||+++|++|||||||+++|.++.+....++.+.....+.+++..+.+||++|++.++. .+..+++.+|++++|
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ii~v 90 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP-YWRSYFENTDILIYV 90 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHH-HHHHHHTTCSEEEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchh-HHHHHhhccceeEEe
Confidence 4567899999999999999999999999998888899988888888888999999999999988 689999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++..+ +.++..++..+.......+ +|+++|+||+|+.+........+.+.. . ..
T Consensus 91 ~d~~d~~s-~~~~~~~~~~~~~~~~~~~--~pillv~nK~Dl~~~~~~~~~~~~~~~--~---~~--------------- 147 (176)
T d1fzqa_ 91 IDSADRKR-FEETGQELTELLEEEKLSC--VPVLIFANKQDLLTAAPASEIAEGLNL--H---TI--------------- 147 (176)
T ss_dssp EETTCGGG-HHHHHHHHHHHTTCGGGTT--CCEEEEEECTTSTTCCCHHHHHHHTTG--G---GC---------------
T ss_pred eccccccc-hhhhhhhhhhhhhhhccCC--CeEEEEEEeccccccccHHHHHHHHHH--H---HH---------------
Confidence 99999665 8888888888876644444 999999999999877665544332210 0 00
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-.....+++|||++|+| ++|+++||.+
T Consensus 148 --------------~~~~~~~~~~SA~tg~g---v~e~~~~l~~ 174 (176)
T d1fzqa_ 148 --------------RDRVWQIQSCSALTGEG---VQDGMNWVCK 174 (176)
T ss_dssp --------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------HhcCCEEEEEeCCCCCC---HHHHHHHHHh
Confidence 02337899999999999 9999999975
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=3.4e-33 Score=201.89 Aligned_cols=160 Identities=21% Similarity=0.369 Sum_probs=132.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
+++||+++|++|||||||+++|.+..+....||.+.....+..++..+.+||+||++.++. .+..+++.++++++|+|+
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~v~d~ 79 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS-YWRNYFESTDGLIWVVDS 79 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHT-TGGGGCTTCSEEEEEEET
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhh-HHHhhhhhhhcceeeeec
Confidence 4689999999999999999999998888777999988888988888999999999999988 688899999999999999
Q ss_pred CCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccccc
Q psy1914 90 STVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFL 169 (211)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (211)
++... +.....++...+......+ +|+++|+||+|+.+.....+....+. +. ..
T Consensus 80 ~d~~~-~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~~~~~--~~---~~------------------ 133 (165)
T d1ksha_ 80 ADRQR-MQDCQRELQSLLVEERLAG--ATLLIFANKQDLPGALSCNAIQEALE--LD---SI------------------ 133 (165)
T ss_dssp TCGGG-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHTT--GG---GC------------------
T ss_pred ccchh-HHHHHHhhhhhhhhcccCC--CceEEEEeccccccccCHHHHHHHHH--hh---hh------------------
Confidence 99655 8888888888877655555 99999999999987777655443321 00 00
Q ss_pred CCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 170 GNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..++.+++|||++|+| ++++++||.+
T Consensus 134 -----------~~~~~~~~~~Sa~~g~g---v~e~~~~l~~ 160 (165)
T d1ksha_ 134 -----------RSHHWRIQGCSAVTGED---LLPGIDWLLD 160 (165)
T ss_dssp -----------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------hcCCCEEEEEECCCCCC---HHHHHHHHHH
Confidence 02347899999999999 9999999864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=5.4e-33 Score=200.78 Aligned_cols=160 Identities=21% Similarity=0.376 Sum_probs=133.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+++||+++|++|||||||+++|..+.+...+ ||.+.+...++.++..+.+||+||++.+.. .+..++..++++++|+|
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~v~d 79 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS-MWERYCRGVSAIVYMVD 79 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHT-THHHHHTTCSEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccc-cccccccccchhhcccc
Confidence 3689999999999999999999999886655 888888888899888999999999999998 68889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+++..+ +.....++..++......+ +|+++|+||+|+.+.....++.+.+.. . ..
T Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~~~~--~pi~lv~nK~Dl~~~~~~~~i~~~~~~--~--------~~------------ 134 (164)
T d1zd9a1 80 AADQEK-IEASKNELHNLLDKPQLQG--IPVLVLGNKRDLPGALDEKELIEKMNL--S--------AI------------ 134 (164)
T ss_dssp TTCGGG-HHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTCCCHHHHHHHTTG--G--------GC------------
T ss_pred cccccc-cchhhhhhhhhhhhhcccC--CcEEEEEeccccchhhhHHHHHHHHHH--H--------HH------------
Confidence 999655 8889999999887755545 999999999999877766554433220 0 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+.+++|||++|+| ++++++||.+
T Consensus 135 ------------~~~~~~~~e~Sa~~g~g---v~e~~~~l~~ 161 (164)
T d1zd9a1 135 ------------QDREICCYSISCKEKDN---IDITLQWLIQ 161 (164)
T ss_dssp ------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------HhCCCEEEEEeCcCCcC---HHHHHHHHHH
Confidence 01237899999999999 9999999975
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=3.7e-33 Score=203.30 Aligned_cols=162 Identities=20% Similarity=0.366 Sum_probs=136.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+++++||+++|++|||||||+++|+.+.+....+|.+............+.+||+||+..++. .+..++++++++++|+
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~ii~v~ 87 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-LWRHYYTGTQGLIFVV 87 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHH-HHGGGTTTCCEEEEEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhh-HHHhhhcccceEEEEE
Confidence 567899999999999999999999999988888999998888888888999999999999998 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|+++..+ +..+..++...++...... +|+++|+||+|+.+.....++...+. +.. .
T Consensus 88 D~s~~~~-~~~~~~~l~~~~~~~~~~~--~piiiv~NK~Dl~~~~~~~~i~~~~~--~~~-----------~-------- 143 (173)
T d1e0sa_ 88 DCADRDR-IDEARQELHRIINDREMRD--AIILIFANKQDLPDAMKPHEIQEKLG--LTR-----------I-------- 143 (173)
T ss_dssp ETTCGGG-HHHHHHHHHHHHTSGGGTT--CEEEEEEECTTSTTCCCHHHHHHHTT--GGG-----------C--------
T ss_pred ecccchh-HHHHHHHHHHHhhhccccc--ceeeeeeecccccccccHHHHHHHHH--HHH-----------H--------
Confidence 9998665 8888899999887655444 99999999999987776655443322 000 0
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
-..++.+++|||+||+| |+|+++||.+
T Consensus 144 -------------~~~~~~~~e~SA~tg~g---v~e~~~~l~~ 170 (173)
T d1e0sa_ 144 -------------RDRNWYVQPSCATSGDG---LYEGLTWLTS 170 (173)
T ss_dssp -------------CSSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred -------------HhCCCEEEEeeCCCCcC---HHHHHHHHHH
Confidence 02347899999999999 9999999974
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=3.7e-33 Score=204.87 Aligned_cols=163 Identities=23% Similarity=0.412 Sum_probs=131.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+++.+||+++|++|||||||+++|..+.+....||.+.....+..++..+.+||+||++.++. .+..++.+++++++|
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~ii~v 91 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP-YWRCYYADTAAVIFV 91 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCT-TGGGTTTTEEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccch-hHHhhhccceeEEEE
Confidence 4677899999999999999999999998888888999988888888888999999999999988 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.+...++...+......+ .|+++|+||+|+.+.....++.+.+. +. .
T Consensus 92 ~d~~d~~s-~~~~~~~l~~~~~~~~~~~--~piliv~NK~Dl~~~~~~~~i~~~~~--~~-----------~-------- 147 (182)
T d1moza_ 92 VDSTDKDR-MSTASKELHLMLQEEELQD--AALLVFANKQDQPGALSASEVSKELN--LV-----------E-------- 147 (182)
T ss_dssp EETTCTTT-HHHHHHHHHHHTTSSTTSS--CEEEEEEECTTSTTCCCHHHHHHHTT--TT-----------T--------
T ss_pred eeeccccc-chhHHHHHHHHHHhhccCC--cceEEEEEeeccccccCHHHHHHHHH--HH-----------H--------
Confidence 99999665 7888888888877655444 99999999999987766654443321 00 0
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++++|||++|+| ++++++||.+
T Consensus 148 -------------~~~~~~~~~e~SA~~g~g---v~e~~~~l~~ 175 (182)
T d1moza_ 148 -------------LKDRSWSIVASSAIKGEG---ITEGLDWLID 175 (182)
T ss_dssp -------------CCSSCEEEEEEBGGGTBT---HHHHHHHHHH
T ss_pred -------------HhhCCCEEEEEECCCCCC---HHHHHHHHHH
Confidence 002347899999999999 9999999975
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=2.9e-31 Score=198.53 Aligned_cols=199 Identities=35% Similarity=0.629 Sum_probs=154.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCc---eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~---~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
+|+++|++|||||||+++|+++.+...+||++.+...+.+... .+.+||++|++.++...+..++..++++++|+|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence 6999999999999999999999988888988888888776533 8999999999998765788888999999999999
Q ss_pred CCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccccc
Q psy1914 90 STVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFL 169 (211)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (211)
++....+....+++..++........++|+++|+||+|+.++.+..++.+.+++++..............+........+
T Consensus 82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
T d2fh5b1 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 161 (207)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence 98766567777777777654333334589999999999999999999999998888877777666666666666666777
Q ss_pred CCCCCCeeecCCCCcEEEEEEeeecCCC---ccchHHHHHHHhhC
Q psy1914 170 GNPDKDFEFSDLYNQVSFCDTTGLDSAS---EYDVEQLQDWMVTL 211 (211)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~Sa~tg~g---~~~i~~l~~~i~~l 211 (211)
+..+..|.|++++.++.++++|+++|+| ..+++++.+||.++
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 8888889999999999999999999975 22378899998763
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.1e-31 Score=194.67 Aligned_cols=154 Identities=16% Similarity=0.108 Sum_probs=109.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
+||+++|++|||||||+++|.+..+....++.+..+. .+.+++. .+.+||+||++.+.. ++..+++++|++|+|||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~-~~~~~~~~~d~~ilv~d 80 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW-LPGHCMAMGDAYVIVYS 80 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC--------CHHHHHTSCSEEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccce-ecccchhhhhhhceecc
Confidence 5899999999999999999998877665565555443 4667766 888999999999988 79999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
++++.+ +..+..|+..+...... .++|+++|+||+|+.+.+... .....+.+..+
T Consensus 81 ~t~~~s-~~~~~~~~~~i~~~~~~--~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~--------------------- 136 (168)
T d2gjsa1 81 VTDKGS-FEKASELRVQLRRARQT--DDVPIILVGNKSDLVRSREVSVDEGRACAVVFD--------------------- 136 (168)
T ss_dssp TTCHHH-HHHHHHHHHHHHHHCC----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------------------
T ss_pred cccccc-ccccccccchhhccccc--ccceEEEeecccchhhhcchhHHHHHHHHHhcC---------------------
Confidence 999665 88888888877654322 348999999999998765532 22233333332
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|.| +++++++|.+
T Consensus 137 -----------------~~~~e~Sak~~~~---v~~~f~~l~~ 159 (168)
T d2gjsa1 137 -----------------CKFIETSAALHHN---VQALFEGVVR 159 (168)
T ss_dssp -----------------SEEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------CEEEEEeCCCCcC---HHHHHHHHHH
Confidence 6889999999999 9999998864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.3e-31 Score=192.33 Aligned_cols=158 Identities=15% Similarity=0.237 Sum_probs=123.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccccccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
+.+.+||+++|.+|||||||+++|+++.+...++++... ...+.+++. .+.+||++|++.+.. .+..++++++++
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~~~~~~~~ 81 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-MREQYMRAGHGF 81 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-CHHHHHHHCSEE
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeecccccccccccc-ccchhhccceee
Confidence 456789999999999999999999999988777544332 234666766 788899999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|.+++.+ +..+..|+..+.+..... ++|+++|+||+|+...+.. .+....+.+..+
T Consensus 82 i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~--~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~---------------- 142 (173)
T d2fn4a1 82 LLVFAINDRQS-FNEVGKLFTQILRVKDRD--DFPVVLVGNKADLESQRQVPRSEASAFGASHH---------------- 142 (173)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHHTSS--CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT----------------
T ss_pred eeecccccccc-cchhhhhhHHHHHHhccC--CCceEEEEEeechhhccccchhhhhHHHHhcC----------------
Confidence 99999999665 888888888776543223 3899999999999866543 222223332222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |++++++|.+
T Consensus 143 ----------------------~~~~e~Sak~g~g---v~e~f~~l~~ 165 (173)
T d2fn4a1 143 ----------------------VAYFEASAKLRLN---VDEAFEQLVR 165 (173)
T ss_dssp ----------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------CEEEEEeCCCCcC---HHHHHHHHHH
Confidence 6889999999999 9999999875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.97 E-value=6.4e-31 Score=190.55 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=119.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
+||+++|++|||||||+++++.+++...+ ||.+..+. .+.+++. .+.+||++|++.+.. ++..+++++|++++|+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~-~~~~~~~~~~~~ilv~ 83 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-IRDNYFRSGEGFLCVF 83 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHH-HHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhh-hhhhcccccceeEEEe
Confidence 69999999999999999999999987766 66665543 3566665 788999999999887 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+ +..+..|+..+.+... ..++|+++|+||+|+...+.. .+....+.+..+
T Consensus 84 d~~~~~s-~~~~~~~~~~i~~~~~--~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~-------------------- 140 (168)
T d1u8za_ 84 SITEMES-FAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN-------------------- 140 (168)
T ss_dssp ETTCHHH-HHHHHHHHHHHHHHHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT--------------------
T ss_pred eccchhh-hhhHHHHHHHHHHhhC--CCCCcEEEEeccccccccccccHHHHHHHHHHcC--------------------
Confidence 9999665 8888888888765432 234999999999999776543 222333333333
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|.| |++++++|.+
T Consensus 141 ------------------~~~~e~Sak~g~g---v~e~f~~l~~ 163 (168)
T d1u8za_ 141 ------------------VNYVETSAKTRAN---VDKVFFDLMR 163 (168)
T ss_dssp ------------------CEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------------CeEEEEcCCCCcC---HHHHHHHHHH
Confidence 6889999999999 9999998864
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.6e-31 Score=191.23 Aligned_cols=157 Identities=18% Similarity=0.246 Sum_probs=122.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|.+|||||||+++|+++.+...+ ||++..... ...++. .+.+||++|++.+.. .+..+++.+|++++|
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA-MQRLSISKGHAFILV 80 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH-HHHHHHHHCSEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccc-cccccccceeEEEEE
Confidence 589999999999999999999999987665 677655443 455555 778899999999988 688889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
||++++++ +..+..|+..+..... ...++|+++|+||+|+...+... +..+.+.+..+
T Consensus 81 ~d~~~~~s-~~~~~~~~~~~~~~~~-~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~------------------- 139 (171)
T d2erxa1 81 YSITSRQS-LEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWK------------------- 139 (171)
T ss_dssp EETTCHHH-HHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-------------------
T ss_pred eecccccc-hhcccchhhhhhhhhc-cCCCCcEEEEeecccccccccccHHHHHHHHHHcC-------------------
Confidence 99999665 8888888877654221 12348999999999997665432 22333443333
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
+++++|||++|+| |+++++.|.++
T Consensus 140 -------------------~~~~e~Sak~~~~---v~e~f~~l~~~ 163 (171)
T d2erxa1 140 -------------------CAFMETSAKLNHN---VKELFQELLNL 163 (171)
T ss_dssp -------------------CEEEECBTTTTBS---HHHHHHHHHHT
T ss_pred -------------------CeEEEEcCCCCcC---HHHHHHHHHHH
Confidence 6889999999999 99999988764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.8e-31 Score=190.54 Aligned_cols=157 Identities=15% Similarity=0.240 Sum_probs=123.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+++||+++|.+|||||||+++++.+.+...+ ||++..... +..++. .+.+||++|+..+.. ++..+++++|++|+
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~il 80 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-MRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-HHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccc-cccccccccceeEE
Confidence 4689999999999999999999999998776 455544433 344444 799999999999988 68889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ ++.+..|+..+.+.... +++|+++|+||+|+........ ....+.++.
T Consensus 81 v~d~~~~~s-f~~~~~~~~~~~~~~~~--~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~------------------- 138 (167)
T d1c1ya_ 81 VYSITAQST-FNDLQDLREQILRVKDT--EDVPMILVGNKCDLEDERVVGKEQGQNLARQW------------------- 138 (167)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHHCC--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------------
T ss_pred eeeccchhh-hHhHHHHHHHHHHhcCC--CCCeEEEEEEecCcccccccchhHHHHHHHHh-------------------
Confidence 999999665 99999999888754332 3499999999999986654322 222222211
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| |++++++|.+
T Consensus 139 ------------------~~~~~~e~Sak~g~g---v~e~F~~l~~ 163 (167)
T d1c1ya_ 139 ------------------CNCAFLESSAKSKIN---VNEIFYDLVR 163 (167)
T ss_dssp ------------------TSCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------CCCEEEEEcCCCCcC---HHHHHHHHHH
Confidence 127889999999999 9999999864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.6e-31 Score=191.57 Aligned_cols=157 Identities=15% Similarity=0.274 Sum_probs=124.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ ||.+..+. .+.+++. .+.+||++|.+.+.. ++..++..+|++|
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~-~~~~~~~~~d~~i 80 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI-FPQTYSIDINGYI 80 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-CCGGGTSSCCEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeeccccccccccc-ccchhhhhhhhhh
Confidence 35679999999999999999999998887765 67766544 3677776 788999999999887 6778889999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|||++++.+ +..+..|+..+.+.... .++|+++|+||+|+...+.. .+....+.++++
T Consensus 81 lv~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~----------------- 140 (167)
T d1xtqa1 81 LVYSVTSIKS-FEVIKVIHGKLLDMVGK--VQIPIMLVGNKKDLHMERVISYEEGKALAESWN----------------- 140 (167)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHHCS--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------
T ss_pred hhcccchhhh-hhhhhhhhhhhhhcccc--cccceeeeccccccccccchhHHHHHHHHHHcC-----------------
Confidence 9999999665 88888888887654322 34999999999999876553 222333444333
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |+++++.|..
T Consensus 141 ---------------------~~~~e~Sak~~~~---v~~~f~~li~ 163 (167)
T d1xtqa1 141 ---------------------AAFLESSAKENQT---AVDVFRRIIL 163 (167)
T ss_dssp ---------------------CEEEECCTTCHHH---HHHHHHHHHH
T ss_pred ---------------------CEEEEEecCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999987753
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=1.5e-30 Score=188.64 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=118.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|.++.+...+ ++.+.... .+...+. .+.+|||||++.+.. ++..+++++|++|+|
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~-~~~~~~~~ad~~ilv 84 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRT-ITTAYYRGAMGFILM 84 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHHTTTTTCCEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHH-HHHHHHhcCCEEEEE
Confidence 68999999999999999999998876665 45554443 3444444 789999999999988 789899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++++ +.....++...... .....|+++|+||+|+.+..... +....+.+..+
T Consensus 85 ~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~------------------- 141 (169)
T d3raba_ 85 YDITNEES-FNAVQDWSTQIKTY---SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG------------------- 141 (169)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHH---CCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-------------------
T ss_pred EECccchh-hhhhhhhhhhhhcc---cCCcceEEEEEeecccccccccchhhhHHHHHHcC-------------------
Confidence 99999665 77777777665432 22348999999999998766532 22233333332
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 142 -------------------~~~~e~Sak~g~g---v~e~f~~l~~ 164 (169)
T d3raba_ 142 -------------------FEFFEASAKDNIN---VKQTFERLVD 164 (169)
T ss_dssp -------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred -------------------CEEEEecCCCCcC---HHHHHHHHHH
Confidence 6889999999999 9999999875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.6e-30 Score=186.43 Aligned_cols=153 Identities=22% Similarity=0.318 Sum_probs=121.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|.+|||||||+++|.++++...+ |+++..... ...++. .+.+||++|++.+.. .+..++..++++++|
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~ilv 79 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS-LIPSYIRDSAAAVVV 79 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGG-GHHHHHTTCSEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhcc-chHHHhhccceEEEe
Confidence 58999999999999999999999987766 555555443 444444 788999999999998 689899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ +..+..|+..+.... ..+.|+++|+||+|+.+.+... +....+.+..+
T Consensus 80 ~d~~~~~s-~~~i~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~------------------- 136 (164)
T d1yzqa1 80 YDITNVNS-FQQTTKWIDDVRTER---GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN------------------- 136 (164)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHHH---TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-------------------
T ss_pred eccccccc-hhhhHhhHHHHHHhc---CCCceEEEEecccchhhhhhhhHHHHHHHHHHcC-------------------
Confidence 99999665 888888888776532 2349999999999997655432 22333333222
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+++|||++|+| |++++++|.+
T Consensus 137 -------------------~~~~e~SAk~g~~---v~e~f~~i~~ 159 (164)
T d1yzqa1 137 -------------------VMFIETSAKAGYN---VKQLFRRVAA 159 (164)
T ss_dssp -------------------CEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------CEEEEecCCCCcC---HHHHHHHHHH
Confidence 6899999999999 9999999875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.7e-31 Score=189.82 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=121.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+++||+++|++|||||||+++|+++.+...+ ||++.... ....++. .+.+||++|++.+.. ....++++++++++
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-MRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-HHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCcccccc-chHHHhhcccceee
Confidence 5789999999999999999999999987776 45443332 2455554 788999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....|+..+...... .++|+++|+||+|+...+.... ....+.+..+
T Consensus 81 v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~------------------ 139 (167)
T d1kaoa_ 81 VYSLVNQQS-FQDIKPMRDQIIRVKRY--EKVPVILVGNKVDLESEREVSSSEGRALAEEWG------------------ 139 (167)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT------------------
T ss_pred eeeecchhh-hhhhhchhhhhhhhccC--CCCCEEEEEEccchhhcccchHHHHHHHHHHcC------------------
Confidence 999999665 88899988877653322 3499999999999987654332 2222332222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |++++++|.+
T Consensus 140 --------------------~~~~e~Sak~g~~---i~e~f~~i~~ 162 (167)
T d1kaoa_ 140 --------------------CPFMETSAKSKTM---VDELFAEIVR 162 (167)
T ss_dssp --------------------SCEEEECTTCHHH---HHHHHHHHHH
T ss_pred --------------------CeEEEECCCCCcC---HHHHHHHHHH
Confidence 5789999999999 9999998864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.3e-30 Score=187.21 Aligned_cols=156 Identities=16% Similarity=0.265 Sum_probs=122.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+++||+++|++|||||||+++|+++.+...+ ++.+..... +...+. .+.+||++|++.+.. .+..+++.++++++
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~ii 80 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-MRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHH-HHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCcccccc-chhhhhhcccccce
Confidence 4689999999999999999999999987765 555544433 344444 789999999999988 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|++++.+ ++....|+..+...... .++|+++|+||+|+.......+....+.+..+
T Consensus 81 v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------------- 138 (166)
T d1ctqa_ 81 VFAINNTKS-FEDIHQYREQIKRVKDS--DDVPMVLVGNKCDLAARTVESRQAQDLARSYG------------------- 138 (166)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHHTC--SSCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-------------------
T ss_pred eeccccccc-HHHHHHHHHHHHHhcCC--CCCeEEEEecccccccccccHHHHHHHHHHhC-------------------
Confidence 999999655 88888887776653322 33899999999999765544444444443333
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |++++++|.+
T Consensus 139 -------------------~~~~e~Sak~g~g---i~e~f~~i~~ 161 (166)
T d1ctqa_ 139 -------------------IPYIETSAKTRQG---VEDAFYTLVR 161 (166)
T ss_dssp -------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------CeEEEEcCCCCcC---HHHHHHHHHH
Confidence 6789999999999 9999998864
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.9e-31 Score=191.01 Aligned_cols=168 Identities=13% Similarity=0.157 Sum_probs=120.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+.||+++|++|||||||+++++.+.+...+ ||.+..... ...++. .+.+||++|++.+.. ++..+++++|++|+|
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~~ilv 80 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-LRPLSYPDTDVILMC 80 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-TGGGGCTTCSEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcc-cchhhcccchhhhhh
Confidence 479999999999999999999999987766 555543332 455555 799999999999998 788999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
||++++.+ ++....++...+.... +++|+++|+||+|+...+.......... ....+..+..
T Consensus 81 ~d~~~~~S-f~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~-------~~~v~~~e~~------- 142 (177)
T d1kmqa_ 81 FSIDSPDS-LENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMK-------QEPVKPEEGR------- 142 (177)
T ss_dssp EETTCHHH-HHHHHHTHHHHHHHHS---TTSCEEEEEECGGGTTCHHHHHHHHHTT-------CCCCCHHHHH-------
T ss_pred cccchhHH-HHHHHHHHHHHHHHhC---CCCceEEeeecccccchhhHHHHHHHhh-------cccccHHHHH-------
Confidence 99999665 8888888877766432 3499999999999976543221111000 0000000000
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+ .......+|++|||++|+| |+++++.|.+
T Consensus 143 ~~----------a~~~~~~~~~E~SAkt~~g---i~e~F~~i~~ 173 (177)
T d1kmqa_ 143 DM----------ANRIGAFGYMECSAKTKDG---VREVFEMATR 173 (177)
T ss_dssp HH----------HHHTTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HH----------HHHcCCcEEEEecCCCCcC---HHHHHHHHHH
Confidence 00 0001226889999999999 9999999875
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=7.8e-31 Score=189.29 Aligned_cols=152 Identities=13% Similarity=0.204 Sum_probs=120.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|.++.+...+ ||++..... ...++. .+.+||++|+..+.. ++..++++++++++|
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-ITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-CCHHHHTTCCEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhh-hhhhhhccCceEEEE
Confidence 69999999999999999999998887665 677655544 344444 889999999999888 688889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ ++.+..|+..+.... .++|+++|+||+|+...+... +..+.+.+..+
T Consensus 82 ~d~~~~~s-~~~~~~~~~~i~~~~----~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~------------------- 137 (164)
T d1z2aa1 82 FSTTDRES-FEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK------------------- 137 (164)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-------------------
T ss_pred Eeccchhh-hhhcccccccccccC----CCceEEEeeccCCcccceeeeehhhHHHHHHcC-------------------
Confidence 99999665 888888887775431 238999999999998765432 22333433333
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|.| |++++++|.+
T Consensus 138 -------------------~~~~e~Sak~g~~---v~e~f~~l~~ 160 (164)
T d1z2aa1 138 -------------------LRFYRTSVKEDLN---VSEVFKYLAE 160 (164)
T ss_dssp -------------------CEEEECBTTTTBS---SHHHHHHHHH
T ss_pred -------------------CEEEEeccCCCcC---HHHHHHHHHH
Confidence 6889999999999 9999999864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.5e-30 Score=186.78 Aligned_cols=156 Identities=13% Similarity=0.240 Sum_probs=123.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.+||+++|++|||||||+++++++.+.+.+ ||.+..+. .+..++. .+.+||++|++.+.. ++..+++++|++++
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~ll 81 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-MREQYMRTGDGFLI 81 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-SHHHHHHHCSEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecccccccccccccccccccccccccccc-chhhhhhhccEEEE
Confidence 4689999999999999999999998887666 55544333 3455555 888999999999988 68889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|||++++.+ +..+..|+..+.+..... ++|+++++||+|+...+... +....+.+..+
T Consensus 82 v~d~~d~~S-f~~~~~~~~~i~~~~~~~--~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~------------------ 140 (169)
T d1x1ra1 82 VYSVTDKAS-FEHVDRFHQLILRVKDRE--SFPMILVANKVDLMHLRKVTRDQGKEMATKYN------------------ 140 (169)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHHTSS--CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT------------------
T ss_pred ecccccchh-hhccchhhHHHHhhcccc--CccEEEEecccchhhhceeehhhHHHHHHHcC------------------
Confidence 999999665 888888888876643333 49999999999998776532 22333444333
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCC-CccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSA-SEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~-g~~~i~~l~~~i~~ 210 (211)
+++++||||+|+ | |++++++|.+
T Consensus 141 --------------------~~~~e~Sak~~~~n---V~~~F~~l~~ 164 (169)
T d1x1ra1 141 --------------------IPYIETSAKDPPLN---VDKTFHDLVR 164 (169)
T ss_dssp --------------------CCEEEEBCSSSCBS---HHHHHHHHHH
T ss_pred --------------------CEEEEEcCCCCCcC---HHHHHHHHHH
Confidence 678999999987 9 9999998865
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.3e-30 Score=188.05 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=119.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|+++.+...+ ++++... ..+.+++. .+.+|||||++.+.. ++..++++++++++|
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~-~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS-ITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHGGGSTTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHHhccceEEEe
Confidence 78999999999999999999998886655 4554443 44566665 688999999999998 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|.+++.+ +....+++..+.+. .....|+++|+||+|+....... +....+.+..+
T Consensus 85 ~d~~~~~s-~~~~~~~~~~i~~~---~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~------------------- 141 (171)
T d2ew1a1 85 YDITCEES-FRCLPEWLREIEQY---ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD------------------- 141 (171)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-------------------
T ss_pred eecccchh-hhhhhhhhhhhccc---ccccccEEEEEeecccccccchhhhHHHHHHHhCC-------------------
Confidence 99999665 88888888777643 22348999999999998665432 22233333222
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.++++|||+||+| |++++++|.
T Consensus 142 -------------------~~~~~~SAktg~g---V~e~f~~l~ 163 (171)
T d2ew1a1 142 -------------------MYYLETSAKESDN---VEKLFLDLA 163 (171)
T ss_dssp -------------------CCEEECCTTTCTT---HHHHHHHHH
T ss_pred -------------------CEEEEEccCCCCC---HHHHHHHHH
Confidence 5789999999999 999998875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.5e-30 Score=187.87 Aligned_cols=156 Identities=15% Similarity=0.266 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.++||+++|.+|||||||+++++.+.+...+ ||.+... ..+.+++. .+.+||++|+..+.. ....+++.+|++++
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~il 82 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGA-MREQYMRTGEGFLL 82 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCH-HHHHHHHHCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccc-cccccccccceEEE
Confidence 4589999999999999999999999987776 5554333 33566665 789999999999888 68888899999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|.+++.+ +..+..|+..++...... ..|+++|+||+|+...+... +....+.+.++
T Consensus 83 v~d~~~~~s-~~~~~~~~~~~~~~~~~~--~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~------------------ 141 (171)
T d2erya1 83 VFSVTDRGS-FEEIYKFQRQILRVKDRD--EFPMILIGNKADLDHQRQVTQEEGQQLARQLK------------------ 141 (171)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHHTSS--CCSEEEEEECTTCTTSCSSCHHHHHHHHHHTT------------------
T ss_pred eeccccccc-hhhHHHHhHHHHhhcccC--CCCEEEEEeccchhhhccchHHHHHHHHHHcC------------------
Confidence 999999765 888888888776543333 38999999999997664432 22223333222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|.| |++++++|.+
T Consensus 142 --------------------~~~~e~Sak~~~~---i~e~f~~l~~ 164 (171)
T d2erya1 142 --------------------VTYMEASAKIRMN---VDQAFHELVR 164 (171)
T ss_dssp --------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CEEEEEcCCCCcC---HHHHHHHHHH
Confidence 6889999999999 9999999865
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.1e-30 Score=185.98 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=121.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEE--EecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNF--TYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~--~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+++||+++|.+|||||||+++|..+.+...+ +|.+...... ..++. .+.+||++|++.+.. ++..+++.+++++
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i 81 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA-LAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GTHHHHTTCSEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhH-HHHHHHhhccceE
Confidence 5689999999999999999999999987766 5666555443 33333 678999999999998 7899999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++++ +..+..|+....... ..+.|+++|+||+|+.+.+... +....+.+..+
T Consensus 82 ~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~----------------- 140 (167)
T d1z0ja1 82 IVYDITKEET-FSTLKNWVRELRQHG---PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH----------------- 140 (167)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHS---CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------
T ss_pred EEeeechhhh-hhhHHHhhhhhhhcc---CCcceEEEecccchhccccchhHHHHHHHHHHcC-----------------
Confidence 9999999665 888888876665432 2448999999999998665432 22233333222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |++++.+|.+
T Consensus 141 ---------------------~~~~e~SAk~~~n---V~e~f~~l~~ 163 (167)
T d1z0ja1 141 ---------------------AIFVETSAKNAIN---INELFIEISR 163 (167)
T ss_dssp ---------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CEEEEEecCCCCC---HHHHHHHHHH
Confidence 7899999999999 9999998864
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.9e-31 Score=192.72 Aligned_cols=152 Identities=16% Similarity=0.263 Sum_probs=116.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEE--ecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFT--YEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~--~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
++||+++|++|||||||+++|+++.+...+ ||++....... .++. .+.+||++|+..+.. ++..++++++++++
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~~il 81 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG-LRDGYYIQAQCAII 81 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSS-CGGGGTTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccce-ecchhcccccchhh
Confidence 479999999999999999999999887666 77776655543 3443 899999999999988 78889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|++++++ ++.+..|+..+.+.. .++|+++|+||+|+.......+... ..+
T Consensus 82 v~d~~~~~S-f~~~~~~~~~~~~~~----~~~piilvgnK~Dl~~~~~~~~~~~-~~~---------------------- 133 (170)
T d1i2ma_ 82 MFDVTSRVT-YKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIV-FHR---------------------- 133 (170)
T ss_dssp EEETTSGGG-GTTHHHHHHHHHHHH----CSCCEEEEEECCCCSCSCCTTTSHH-HHS----------------------
T ss_pred ccccccccc-cchhHHHHHHHhhcc----CCCceeeecchhhhhhhhhhhHHHH-HHH----------------------
Confidence 999999665 888888888776532 2499999999999986654432111 110
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++|||++|+| +++++++|.+
T Consensus 134 ----------------~~~~~~~e~Sak~~~~---v~e~f~~l~~ 159 (170)
T d1i2ma_ 134 ----------------KKNLQYYDISAKSNYN---FEKPFLWLAR 159 (170)
T ss_dssp ----------------SCSSEEEEEBTTTTBT---TTHHHHHHHH
T ss_pred ----------------HcCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 1236889999999999 9999999874
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.4e-30 Score=185.50 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=122.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|.+|||||||+++|.++++...+ ||.+..... +...+. .+.+||++|++.+.. ++..++++++++
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~ 82 (170)
T d1r2qa_ 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS-LAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GHHHHHTTCSEE
T ss_pred eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhh-hHHHHhhCcceE
Confidence 34689999999999999999999999987665 566655544 344443 789999999999998 799999999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|.++..+ +.....|+..+.+. ..++.|+++|+||+|+...+... +....+.+.
T Consensus 83 ilv~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~------------------ 140 (170)
T d1r2qa_ 83 IVVYDITNEES-FARAKNWVKELQRQ---ASPNIVIALSGNKADLANKRAVDFQEAQSYADD------------------ 140 (170)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH------------------
T ss_pred EEEeccchhhH-HHHHHHHhhhhhhc---cCCCceEEeecccccccccccccHHHHHHHHHh------------------
Confidence 99999999665 88888888777543 22459999999999998765532 222222221
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| |++++++|.+
T Consensus 141 --------------------~~~~~~e~SAk~g~~---V~e~f~~l~~ 165 (170)
T d1r2qa_ 141 --------------------NSLLFMETSAKTSMN---VNEIFMAIAK 165 (170)
T ss_dssp --------------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------cCCEEEEeeCCCCCC---HHHHHHHHHH
Confidence 227899999999999 9999998864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-29 Score=183.16 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=119.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|.+|||||||++++.++.+...+ ++.+.... .+..++. .+.+||+||++.+.. ++..+++.+|++++|
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA-VTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH-HHHHHHHTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHH-HHHHHhcCCcEEEEE
Confidence 68999999999999999999999887666 34444443 3556665 889999999999988 788999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|+++.++ +.....|+..+... .....|+++++||+|+....... +....+.+...
T Consensus 84 ~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~------------------- 140 (166)
T d1z0fa1 84 YDITRRST-YNHLSSWLTDARNL---TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG------------------- 140 (166)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-------------------
T ss_pred eccCchHH-HHHHHHHHHHHHhh---ccccceEEEEcccccchhhcccHHHHHHHHHHHcC-------------------
Confidence 99999654 88888888776542 22348999999999997665432 22233332222
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++|||+||+| |++++++|.+
T Consensus 141 -------------------~~~~e~Saktg~~---v~e~f~~i~~ 163 (166)
T d1z0fa1 141 -------------------LLFLEASAKTGEN---VEDAFLEAAK 163 (166)
T ss_dssp -------------------CEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999998864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8e-30 Score=184.69 Aligned_cols=154 Identities=15% Similarity=0.223 Sum_probs=117.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||+++++++.+...+ ||++..+.. +..++. .+.+||++|++.+.. ...++++++++++|
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--~~~~~~~~~~~ilv 79 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ--REGHMRWGEGFVLV 79 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHH--HHHHHHHCSEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeeccccccccc--chhhhcccccceee
Confidence 589999999999999999999999987776 677766554 444554 889999999987754 56678889999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ +..+..|+......... .+.|+++|+||+|+...+.+ .+....+.++++
T Consensus 80 ~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~------------------- 137 (168)
T d2atva1 80 YDITDRGS-FEEVLPLKNILDEIKKP--KNVTLILVGNKADLDHSRQVSTEEGEKLATELA------------------- 137 (168)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHHHTT--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-------------------
T ss_pred cccCCccc-hhhhhhhcccccccccc--cCcceeeeccchhhhhhccCcHHHHHHHHHHhC-------------------
Confidence 99999665 77777665443332222 34999999999999866543 233334444443
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCC-CccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSA-SEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~-g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+ | |+++++.|.+
T Consensus 138 -------------------~~~~e~Saktg~gn---V~e~F~~l~~ 161 (168)
T d2atva1 138 -------------------CAFYECSACTGEGN---ITEIFYELCR 161 (168)
T ss_dssp -------------------SEEEECCTTTCTTC---HHHHHHHHHH
T ss_pred -------------------CeEEEEccccCCcC---HHHHHHHHHH
Confidence 689999999998 6 9999988764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.9e-30 Score=186.09 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=114.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|.+|||||||+++|+++.+...+ ||.+..... +..++. .+.+||++|+..+.. ++..+++++|++++
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-LGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------CCSSTTCSEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecc-cchhhccCCceeEE
Confidence 379999999999999999999999987766 556655444 444544 889999999999988 78889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++++ +..+..|+..+.... ....|+++|+||+|+...+.+. +....+.++.+
T Consensus 82 v~d~~~~~S-f~~~~~~~~~~~~~~---~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~------------------ 139 (167)
T d1z08a1 82 VYDITDEDS-FQKVKNWVKELRKML---GNEICLCIVGNKIDLEKERHVSIQEAESYAESVG------------------ 139 (167)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT------------------
T ss_pred EEeCCchhH-HHhhhhhhhhccccc---ccccceeeeccccccccccccchHHHHHHHHHcC------------------
Confidence 999999665 888888887665432 1338999999999998765532 22222333222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |++++++|.+
T Consensus 140 --------------------~~~~e~Sak~~~~---v~e~F~~l~~ 162 (167)
T d1z08a1 140 --------------------AKHYHTSAKQNKG---IEELFLDLCK 162 (167)
T ss_dssp --------------------CEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CeEEEEecCCCcC---HHHHHHHHHH
Confidence 6889999999999 9999999874
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1e-29 Score=185.06 Aligned_cols=153 Identities=20% Similarity=0.301 Sum_probs=119.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEE--EecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNF--TYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~--~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|.+|||||||+++|..+++...+ ||.+...... ..++. .+.+||+||++++.. ++..+++.++++++|
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS-VTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHHTTSTTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhh-hHHHHhhhCCEEEEE
Confidence 68999999999999999999998887665 4555554443 33443 899999999999998 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|.+++++ +..+..++..+.... ..++|+++|+||+|+........ ....+.+..
T Consensus 85 ~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-------------------- 140 (174)
T d2bmea1 85 YDITSRET-YNALTNWLTDARMLA---SQNIVIILCGNKKDLDADREVTFLEASRFAQEN-------------------- 140 (174)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--------------------
T ss_pred Eecccchh-HHHHhhhhccccccc---CCceEEEEEEecccccchhchhhhHHHHHHHhC--------------------
Confidence 99999654 888888887776432 23599999999999976555322 222333222
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|+| ++++++||.+
T Consensus 141 ------------------~~~~~e~Sak~~~g---i~e~f~~l~~ 164 (174)
T d2bmea1 141 ------------------ELMFLETSALTGEN---VEEAFVQCAR 164 (174)
T ss_dssp ------------------TCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------------CCEEEEeeCCCCcC---HHHHHHHHHH
Confidence 27889999999999 9999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.4e-30 Score=188.89 Aligned_cols=158 Identities=13% Similarity=0.143 Sum_probs=119.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...-+||+++|.+|||||||+++|+.+.+...+ ||++..... +..++. .+.+||++|++.+.. ++..+++++|++
T Consensus 6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~-~~~~~~~~a~~~ 84 (185)
T d2atxa1 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-LRPLSYPMTDVF 84 (185)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-TGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhh-hhhhccccccee
Confidence 345689999999999999999999999987766 666544333 445554 788999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-------------HHHHHHHHHHHhh
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-------------KTLLQKELNLVRR 150 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-------------~~~l~~~~~~~~~ 150 (211)
++|||++++++ ++....++...++.. ..++|+++|+||+|+.+....... ...+.+.+
T Consensus 85 ilv~d~t~~~S-f~~~~~~~~~~~~~~---~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~----- 155 (185)
T d2atxa1 85 LICFSVVNPAS-FQNVKEEWVPELKEY---APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI----- 155 (185)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH---STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH-----
T ss_pred eeccccchHHH-HHHHHHHHHHHHHhc---CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHc-----
Confidence 99999999665 888887877776542 234999999999999754322111 11111111
Q ss_pred hcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 151 TKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+.|++|||++|+| |+++++.+.+
T Consensus 156 --------------------------------~~~~~~E~SAk~~~g---v~e~F~~li~ 180 (185)
T d2atxa1 156 --------------------------------GACCYVECSALTQKG---LKTVFDEAII 180 (185)
T ss_dssp --------------------------------TCSCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------------------CCCEEEEecCCCCcC---HHHHHHHHHH
Confidence 126789999999999 9999988754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.9e-29 Score=183.19 Aligned_cols=156 Identities=16% Similarity=0.229 Sum_probs=122.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+||+++|.+|||||||+++|.++.+...+ ++.+.. ...+.+++. .+.+|||||++.+.. ++..++..+|+++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~ii 84 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-LTPSYYRGAQGVI 84 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-SHHHHHTTCCEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHH-HHHHHHhcCCEEE
Confidence 3579999999999999999999998886665 334333 334566655 799999999999988 7899999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +..+..|+..+........ .|+++++||.|.............+.+..+
T Consensus 85 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~--~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~------------------ 143 (177)
T d1x3sa1 85 LVYDVTRRDT-FVKLDNWLNELETYCTRND--IVNMLVGNKIDKENREVDRNEGLKFARKHS------------------ 143 (177)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHTTCCSCSC--CEEEEEEECTTSSSCCSCHHHHHHHHHHTT------------------
T ss_pred EEEECCCccc-cccchhhhhhhcccccccc--eeeEEEeeccccccccccHHHHHHHHHHCC------------------
Confidence 9999999655 8888888888876544334 899999999998765443333333333222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 144 --------------------~~~~e~Sa~tg~g---v~e~f~~l~~ 166 (177)
T d1x3sa1 144 --------------------MLFIEASAKTCDG---VQCAFEELVE 166 (177)
T ss_dssp --------------------CEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999864
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.97 E-value=3.9e-29 Score=178.81 Aligned_cols=158 Identities=22% Similarity=0.380 Sum_probs=126.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+||+++|++|||||||+++|+++++...+++..............+.+||+||...+.. .+..++..++++++++|.++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~~~d~~~ 79 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSND 79 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHH-HHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchh-hhhhhhccceeEEEEEEecC
Confidence 58999999999999999999998887777766666666666777999999999999888 68888999999999999999
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy1914 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
+.. +.....++...+....... .|+++++||.|+.......++.........
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~--~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~------------------------- 131 (160)
T d1r8sa_ 80 RER-VNEAREELMRMLAEDELRD--AVLLVFANKQDLPNAMNAAEITDKLGLHSL------------------------- 131 (160)
T ss_dssp GGG-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHTTGGGC-------------------------
T ss_pred hHH-HHHHHHHHHHHHHhhcccC--ceEEEEeecccccccccHHHHHHHHHHHHH-------------------------
Confidence 665 8888888888887655555 899999999999877665443322110000
Q ss_pred CCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 172 PDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||+||+| ++++++||.+
T Consensus 132 ---------~~~~~~~~~~SAktg~g---i~e~~~~l~~ 158 (160)
T d1r8sa_ 132 ---------RHRNWYIQATCATSGDG---LYEGLDWLSN 158 (160)
T ss_dssp ---------SSCCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred ---------hhCCCEEEEeECCCCCC---HHHHHHHHHh
Confidence 02237899999999999 9999999974
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-29 Score=185.90 Aligned_cols=154 Identities=18% Similarity=0.276 Sum_probs=118.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecC------------ceEEEEECCCchhhhhhhHHHh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEK------------KNIKIVDLPGEDRLRNKFFDQY 76 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~------------~~~~i~D~~G~~~~~~~~~~~~ 76 (211)
+||+++|++|||||||+++|+++.+...+ ++.+..+ ..+.+++ ..+.+|||+|++.+.. ++..+
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~-~~~~~ 84 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS-LTTAF 84 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH-HHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHH-HHHHH
Confidence 68999999999999999999998887665 3433332 2233322 2689999999999998 79999
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccc
Q psy1914 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 155 (211)
++++|++|+|||++++.+ ++.+..|+..+...... ...|+++|+||+|+...+.... ....+.+..+
T Consensus 85 ~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~--------- 152 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQQS-FLNVRNWMSQLQANAYC--ENPDIVLIGNKADLPDQREVNERQARELADKYG--------- 152 (186)
T ss_dssp HTTCCEEEEEEETTCHHH-HHHHHHHHHTCCCCCTT--TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT---------
T ss_pred HhcCCEEEEEEecccccc-ceeeeeccchhhhhccC--CCceEEEEeeeccchhhhcchHHHHHHHHHHcC---------
Confidence 999999999999999655 88888887766544333 3489999999999987655322 2223333222
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |++++++|.+
T Consensus 153 -----------------------------~~~~e~Sak~~~~---i~e~f~~l~~ 175 (186)
T d2f7sa1 153 -----------------------------IPYFETSAATGQN---VEKAVETLLD 175 (186)
T ss_dssp -----------------------------CCEEEEBTTTTBT---HHHHHHHHHH
T ss_pred -----------------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.1e-29 Score=183.64 Aligned_cols=153 Identities=24% Similarity=0.318 Sum_probs=118.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++.+...+ ++.+.. ...+..++. .+.+||++|++.+.. .+..+++.++++++|
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~-~~~~~~~~~~~~i~v 83 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR-ITSAYYRGAVGALLV 83 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC-CCHHHHTTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHH-HHHHHhhccCeEEEE
Confidence 68999999999999999999999886655 444433 344566665 888999999999988 688889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH-HHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK-TLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|.+++.+ +.....++..+.+.. .+++|+++|+||+|+.+.+...... ....+.
T Consensus 84 ~d~~~~~S-~~~~~~~~~~i~~~~---~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~--------------------- 138 (175)
T d2f9la1 84 YDIAKHLT-YENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK--------------------- 138 (175)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH---------------------
T ss_pred EECCCccc-chhHHHHHHHHHHhc---CCCCcEEEEEeeecccccccchHHHHHHhhcc---------------------
Confidence 99999665 888888888776532 2458999999999998664433221 222211
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| +++++++|.+
T Consensus 139 -----------------~~~~~~e~Sa~~g~~---i~e~f~~l~~ 163 (175)
T d2f9la1 139 -----------------NNLSFIETSALDSTN---VEEAFKNILT 163 (175)
T ss_dssp -----------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------cCceEEEEecCCCcC---HHHHHHHHHH
Confidence 126889999999999 9999988754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.5e-29 Score=182.07 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=117.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||++++.++++...+ ++.+... ......+. .+.+||++|++.+.. ++..++..+|++++|
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-ITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-CCHHHHTTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhh-HHHHHhhccCEEEEE
Confidence 68999999999999999999999887665 3333333 23344443 889999999999988 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|++++.+ +.....|+..+.+. ...++|+++|+||+|+...+... +....+.+..+
T Consensus 83 ~d~~~~~s-f~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~------------------- 139 (173)
T d2a5ja1 83 YDITRRET-FNHLTSWLEDARQH---SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG------------------- 139 (173)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-------------------
T ss_pred EeecChHH-HHhHHHHHHHHHHh---CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcC-------------------
Confidence 99999665 88888888877653 22459999999999987655432 22333333222
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++|||++|.| |++++++|.+
T Consensus 140 -------------------~~~~e~Sa~tg~~---V~e~f~~i~~ 162 (173)
T d2a5ja1 140 -------------------LIFMETSAKTACN---VEEAFINTAK 162 (173)
T ss_dssp -------------------CEEEEECTTTCTT---HHHHHHHHHH
T ss_pred -------------------CEEEEecCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999988864
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.2e-29 Score=184.58 Aligned_cols=154 Identities=21% Similarity=0.260 Sum_probs=92.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
-+||+++|.+|||||||+++|+++.+...+ +|++... ..++.++. .+.+|||||++.+.. ++..+++.+|++|+
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~-~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------CCTTTTTCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHH-HHHHhccCCCEEEE
Confidence 368999999999999999999998876555 5555444 34666665 778899999999998 78889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +..+..++..+.... ..+.|+++|+||.|+......... .........
T Consensus 85 v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~------------------ 142 (173)
T d2fu5c1 85 VYDITNEKS-FDNIRNWIRNIEEHA---SADVEKMILGNKCDVNDKRQVSKERGEKLALDYG------------------ 142 (173)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT------------------
T ss_pred EEECCChhh-HHHHHHHHHHhhhhc---cCCceEEEEEecccchhhcccHHHHHHHHHHhcC------------------
Confidence 999999665 888888877765432 234999999999999876554322 222222222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |+++++||.+
T Consensus 143 --------------------~~~~e~Sa~~g~g---v~e~f~~l~~ 165 (173)
T d2fu5c1 143 --------------------IKFMETSAKANIN---VENAFFTLAR 165 (173)
T ss_dssp --------------------CEEEECCC---CC---HHHHHHHHHH
T ss_pred --------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 7889999999999 9999999874
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.3e-29 Score=181.06 Aligned_cols=153 Identities=19% Similarity=0.269 Sum_probs=112.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEE--EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|+++||||||+++++++++.... ++++..... +..++. .+.+|||||++.+.. ++..+++++|++++
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~-~~~~~~~~~d~~i~ 85 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-VTHAYYRDAHALLL 85 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------CCGGGCSEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHH-HHHHhhcCCceeEE
Confidence 68999999999999999999998875443 445555544 455555 788999999999988 78889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|.+++.+ +.....++....... ....|+++|+||+|+.+..... +....+.+..+
T Consensus 86 v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~------------------ 143 (170)
T d2g6ba1 86 LYDVTNKAS-FDNIQAWLTEIHEYA---QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG------------------ 143 (170)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT------------------
T ss_pred EecCCcccc-hhhhhhhhhhhhhcc---CCCceEEEEEeeechhhcccccHHHHHHHHHHcC------------------
Confidence 999999665 888888887765432 2348999999999998765533 22223333222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |++++++|.+
T Consensus 144 --------------------~~~~e~Sak~g~g---i~e~f~~l~~ 166 (170)
T d2g6ba1 144 --------------------LPFMETSAKTGLN---VDLAFTAIAK 166 (170)
T ss_dssp --------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------CEEEEEeCCCCcC---HHHHHHHHHH
Confidence 6889999999999 9999999874
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.3e-29 Score=183.23 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=107.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEE--EecCc---eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNF--TYEKK---NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~--~~~~~---~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+||+++|++|||||||+++|+++++...+ ||.+...... ...+. .+.+||++|++.+.. .+..+++.++++++
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-LGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------CCSTTCCEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhh-HHHHHhhccceEEE
Confidence 68999999999999999999998887665 4544443332 22322 688999999999888 68889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcC-cCCCCCcEEEEEeCCCccCCCC--HHHHHHHHHHHHHHHhhhcccccccchhh
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQ-VQSSRVNILVCCNKQDQTLAKS--SSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|++++.+ +..+..|+..+..... ....++|+++|+||+|+.+.+. ..+..+.+.+.+.
T Consensus 82 v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~---------------- 144 (175)
T d1ky3a_ 82 VYDVTNASS-FENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG---------------- 144 (175)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT----------------
T ss_pred Eeecccccc-cchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcC----------------
Confidence 999999665 7888888776654211 1223589999999999976532 2222333332221
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|.| |++++++|.+
T Consensus 145 ---------------------~~~~~e~SA~~g~g---v~e~f~~l~~ 168 (175)
T d1ky3a_ 145 ---------------------DIPLFLTSAKNAIN---VDTAFEEIAR 168 (175)
T ss_dssp ---------------------SCCEEEEBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CCeEEEEeCCCCcC---HHHHHHHHHH
Confidence 26789999999999 9999999865
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-29 Score=186.33 Aligned_cols=171 Identities=13% Similarity=0.148 Sum_probs=120.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|.+|||||||+++|+.+.+...+ ||++.... .+..++. .+.+||++|++.+.. ++..+++++|++
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~ 80 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-LRPLSYPQTDVS 80 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-TGGGGCTTCSEE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchh-hhhhccccccee
Confidence 356789999999999999999999999987766 56554433 3555555 788999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy1914 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ ++.+..+|...++.. . .++|+++|+||+|+...+..... ..... ...........
T Consensus 81 ilv~d~~~~~s-f~~i~~~~~~~~~~~-~--~~~piilvgnK~Dl~~~~~~~~~---~~~~~----~~~~~~~~~~~--- 146 (183)
T d1mh1a_ 81 LICFSLVSPAS-FENVRAKWYPEVRHH-C--PNTPIILVGTKLDLRDDKDTIEK---LKEKK----LTPITYPQGLA--- 146 (183)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH-S--TTSCEEEEEECHHHHTCHHHHHH---HHHTT----CCCCCHHHHHH---
T ss_pred eeeeccchHHH-HHHHHHHHHHHHHHh-C--CCCcEEEEeecccchhhhhhhhh---hhhcc----ccchhhHHHHH---
Confidence 99999999665 888877777766542 2 34899999999999755432111 11000 00000000000
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..-.+.+.|++|||++|+| |+++|+.|.+
T Consensus 147 --------------~a~~~~~~~~~E~SAk~~~~---V~e~F~~l~~ 176 (183)
T d1mh1a_ 147 --------------MAKEIGAVKYLECSALTQRG---LKTVFDEAIR 176 (183)
T ss_dssp --------------HHHHTTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------HHHHcCCceEEEcCCCCCcC---HHHHHHHHHH
Confidence 00001237899999999999 9999998864
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.9e-29 Score=181.24 Aligned_cols=153 Identities=22% Similarity=0.333 Sum_probs=118.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|++|||||||+++|+.+.+...+ ||++.... .+.+++. .+.+|||||++.+.. ++..++++++++++|
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT-ITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC-CCHHHHTTEEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHHhcCCEEEEE
Confidence 68999999999999999999999887665 66665554 4555665 777899999999988 789999999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|.+++.+ +.....++....... ....|+++++||.|+.......+....+.+..+
T Consensus 82 ~d~~~~~s-~~~~~~~~~~~~~~~---~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~-------------------- 137 (166)
T d1g16a_ 82 YDITDERT-FTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEALAKELG-------------------- 137 (166)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT--------------------
T ss_pred EECCCccC-HHHHHhhhhhhhccc---cCcceeeeecchhhhhhhhhhHHHHHHHHHhcC--------------------
Confidence 99999665 777776666555432 234899999999999877665555554544333
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 138 ------------------~~~~~~Sa~~~~~---v~e~f~~l~~ 160 (166)
T d1g16a_ 138 ------------------IPFIESSAKNDDN---VNEIFFTLAK 160 (166)
T ss_dssp ------------------CCEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------CeEEEECCCCCCC---HHHHHHHHHH
Confidence 7889999999999 9999999875
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.6e-29 Score=184.71 Aligned_cols=154 Identities=25% Similarity=0.287 Sum_probs=119.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
-+||+++|++|||||||+++|+++.+...+ ||.+.... .+.+++. .+.+|||||++.+.. ++..++++++++|+
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~-~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-ITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-CCGGGGTTCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHH-HHHHHhccCCEEEE
Confidence 368999999999999999999998887665 66665544 3566655 888999999999988 78899999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH-HHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK-TLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++++ +.....++..+.+. ...+.|+++|+||+|+.+........ ..+.+.
T Consensus 85 v~d~t~~~s-~~~~~~~~~~~~~~---~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-------------------- 140 (194)
T d2bcgy1 85 VYDVTDQES-FNGVKMWLQEIDRY---ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-------------------- 140 (194)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHH---SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH--------------------
T ss_pred EEeCcchhh-hhhHhhhhhhhhhc---ccCCceEEEEEeccccccccchhHHHHhhhhhc--------------------
Confidence 999998655 77777777766542 22448999999999998765543222 222211
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++|||++|.| |++++++|.+
T Consensus 141 ------------------~~~~~~e~SAk~g~g---i~e~f~~l~~ 165 (194)
T d2bcgy1 141 ------------------NKMPFLETSALDSTN---VEDAFLTMAR 165 (194)
T ss_dssp ------------------TTCCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------------cCcceEEEecCcCcc---HHHHHHHHHH
Confidence 126789999999999 9999998864
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=8.9e-29 Score=178.41 Aligned_cols=158 Identities=15% Similarity=0.224 Sum_probs=117.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
-+||+++|++|||||||+++|+.+++...+ ++.+.... ...+... .+.+||++|...+....+..+++++|++|+
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence 368999999999999999999999887666 34443333 3444444 889999999988766467788999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++++ +..+..|+..+.+.... .++|+++|+||+|+.+.+... +..+.+.+..+
T Consensus 82 v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~------------------ 140 (165)
T d1z06a1 82 VYDMTNMAS-FHSLPAWIEECKQHLLA--NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS------------------ 140 (165)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHCCC--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT------------------
T ss_pred EEEeehhhh-hhhhhhhhHHHHhhccC--CCCeEEEEeccccchhccchhHHHHHHHHHHCC------------------
Confidence 999999665 88888888887664332 349999999999998765432 22223333222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
+++++||||||.+..+|++++++|.
T Consensus 141 --------------------~~~~e~SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 141 --------------------MPLFETSAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp --------------------CCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred --------------------CEEEEEecccCCcCcCHHHHHHHhC
Confidence 6789999998652222999999873
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.5e-29 Score=184.88 Aligned_cols=168 Identities=11% Similarity=0.147 Sum_probs=119.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+||+++|++|||||||+++|+.+.+...+ ||++..... ...++. .+.+||++|++.+.. ++..+++.+|++++|
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR-LRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-TGGGGCTTCSEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhh-hhhhcccccceeecc
Confidence 479999999999999999999999987776 666654433 455555 789999999999988 788899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
||++++++ ++.+..|+...+... ..+.|+++|+||+|+.+.....+. +. .......+. + +..
T Consensus 82 ~d~~~~~S-f~~~~~~~~~~~~~~---~~~~~i~lvgnK~Dl~~~~~~~~~---~~----~~~~~~v~~----~---~~~ 143 (191)
T d2ngra_ 82 FSVVSPSS-FENVKEKWVPEITHH---CPKTPFLLVGTQIDLRDDPSTIEK---LA----KNKQKPITP----E---TAE 143 (191)
T ss_dssp EETTCHHH-HHHHHHTHHHHHHHH---CTTCCEEEEEECGGGGGCHHHHHH---HH----TTTCCCCCH----H---HHH
T ss_pred cccchHHH-HHHHHHHHHHHHhhc---CCCCceEEEeccccccccchhhhh---hh----hcccccccH----H---HHH
Confidence 99999665 888888887776532 234999999999999755322111 00 000000000 0 000
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+... ...+.|++|||++|+| |+++++.+.+
T Consensus 144 ~~~~~----------~~~~~~~e~SAk~~~~---V~e~f~~l~~ 174 (191)
T d2ngra_ 144 KLARD----------LKAVKYVECSALTQKG---LKNVFDEAIL 174 (191)
T ss_dssp HHHHH----------TTCSCEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHH----------cCCCeEEEEeCCCCcC---HHHHHHHHHH
Confidence 00000 1125789999999999 9999987753
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.96 E-value=1.4e-28 Score=179.14 Aligned_cols=165 Identities=19% Similarity=0.356 Sum_probs=128.8
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+-..++++||+++|.+|||||||+++|.++++....++.+.....+...+..+.+||++|.+..+. .+..++..+++++
T Consensus 9 ~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~i 87 (177)
T d1zj6a1 9 RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-SWNTYYTNTEFVI 87 (177)
T ss_dssp HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CG-GGHHHHTTCCEEE
T ss_pred HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEecccccccccc-chhhhhccceeee
Confidence 334578899999999999999999999999998888888877777888888999999999998888 6888889999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+++|.++..+ +.....++........... .|+++|+||+|+.......++...+.. . .
T Consensus 88 ~v~d~~d~~~-~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~~~~~i~~~~~~--~-----------~------ 145 (177)
T d1zj6a1 88 VVVDSTDRER-ISVTREELYKMLAHEDLRK--AGLLIFANKQDVKECMTVAEISQFLKL--T-----------S------ 145 (177)
T ss_dssp EEEETTCTTT-HHHHHHHHHHHHTSGGGTT--CEEEEEEECTTSTTCCCHHHHHHHHTG--G-----------G------
T ss_pred eecccccccc-hhhhhhhhhhhhhcccccc--eEEEEEEEcccccccCcHHHHHHHHHH--H-----------h------
Confidence 9999998665 6666666666655544444 999999999999877766554443320 0 0
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++++|||+||+| ++++++||.+
T Consensus 146 ---------------~~~~~~~~~~~Sa~tg~G---i~e~~~~L~~ 173 (177)
T d1zj6a1 146 ---------------IKDHQWHIQACCALTGEG---LCQGLEWMMS 173 (177)
T ss_dssp ---------------CCSSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred ---------------hHhcCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 012448999999999999 9999999975
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.5e-28 Score=176.98 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=120.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||+++|.++++...+ ||.+..+. .+..++. .+.+||++|++.+.. ++..++..+|++++
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~-~~~~~~~~~~~~il 81 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS-LAPMYYRNAQAALV 81 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GHHHHHTTCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHH-HHHHHHhccceEEE
Confidence 479999999999999999999999987766 56665544 3555555 899999999999988 78889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC---CH-HHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK---SS-SVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
|||.+++.+ +.....|+....... ....|+++++||+|+.+.. .. .+....+.+..+
T Consensus 82 v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~--------------- 142 (170)
T d1ek0a_ 82 VYDVTKPQS-FIKARHWVKELHEQA---SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG--------------- 142 (170)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT---------------
T ss_pred EEeCCcccc-hhhhhhhhhhhcccc---ccccceeeeecccccccccchhhhhHHHHHHHHHHcC---------------
Confidence 999999665 888888877655432 2348999999999986542 21 122233333222
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|.| |+++|++|.+
T Consensus 143 -----------------------~~~~e~Sak~g~g---V~e~F~~i~~ 165 (170)
T d1ek0a_ 143 -----------------------LLFFETSAKTGEN---VNDVFLGIGE 165 (170)
T ss_dssp -----------------------CEEEECCTTTCTT---HHHHHHHHHT
T ss_pred -----------------------CEEEEecCCCCcC---HHHHHHHHHH
Confidence 7899999999999 9999999864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=7e-29 Score=182.18 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=118.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEE--EecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNF--TYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~--~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
+||+++|.+|||||||+++|+++++...+ ||.+...... ...+. .+.+||++|+..+.. .+..++..++++++|
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~~ 81 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-LGVAFYRGADCCVLV 81 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-SCCGGGTTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccc-cccccccCccEEEEe
Confidence 58999999999999999999999987766 6666665554 33443 788999999988887 577888899999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCc-CcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADP-QVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
+|.+++.+ +..+..|+..+.... .....++|+++|+||+|+.+.....+....+....
T Consensus 82 ~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------------------- 140 (184)
T d1vg8a_ 82 FDVTAPNT-FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK-------------------- 140 (184)
T ss_dssp EETTCHHH-HHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT--------------------
T ss_pred ecccchhh-hhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHh--------------------
Confidence 99988554 777777776665431 11223489999999999977654443333332111
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| |++++++|.+
T Consensus 141 -----------------~~~~~~e~Sak~~~g---I~e~f~~l~~ 165 (184)
T d1vg8a_ 141 -----------------NNIPYFETSAKEAIN---VEQAFQTIAR 165 (184)
T ss_dssp -----------------TSCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------cCCeEEEEcCCCCcC---HHHHHHHHHH
Confidence 126789999999999 9999999864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.3e-28 Score=177.01 Aligned_cols=161 Identities=16% Similarity=0.196 Sum_probs=117.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
+.+-+||+++|++|||||||++++.++.+...+ +|++.... .+..++. .+.+||++|...... .+..++..+++
T Consensus 3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ 81 (174)
T d1wmsa_ 3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS-LRTPFYRGSDC 81 (174)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHH-HHGGGGTTCSE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehh-hhhhhhhccce
Confidence 344579999999999999999999999887766 44544433 3445554 778999999988888 68888899999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCc-CcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy1914 83 IVYVLDSSTVQKTLRDVAESLYVILADP-QVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++++|.+++.+ +..+..|+..+.... .....++|+++|+||+|+.+.....+....+.+..
T Consensus 82 ~i~~~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~---------------- 144 (174)
T d1wmsa_ 82 CLLTFSVDDSQS-FQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN---------------- 144 (174)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT----------------
T ss_pred EEEEEeeecccc-cchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHc----------------
Confidence 999999998665 777777766554321 12223589999999999976433332222333221
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| |++++++|.+
T Consensus 145 ---------------------~~~~~~e~Sak~~~g---I~e~f~~l~~ 169 (174)
T d1wmsa_ 145 ---------------------GDYPYFETSAKDATN---VAAAFEEAVR 169 (174)
T ss_dssp ---------------------TCCCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CCCeEEEEcCCCCcC---HHHHHHHHHH
Confidence 126789999999999 9999998864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.9e-27 Score=170.37 Aligned_cols=164 Identities=17% Similarity=0.252 Sum_probs=130.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
||+++|++|||||||+|+|.++++....||.+.......+.+....+||++|...+.. .+..++..++++++++|.++.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~ 80 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR-LWKDYFPEVNGIVFLVDAADP 80 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGG-GGGGGCTTCSEEEEEEETTCG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhh-hHhhhhhheeeeeeeccccch
Confidence 8999999999999999999999988888899888888888888999999999988887 688888999999999999996
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy1914 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.. +.....++..........+ .|+++++||.|+.......++.+.+. .... .
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~--~~i~i~~~k~d~~~~~~~~~i~~~~~----~~~~-~-------------------- 132 (166)
T d2qtvb1 81 ER-FDEARVELDALFNIAELKD--VPFVILGNKIDAPNAVSEAELRSALG----LLNT-T-------------------- 132 (166)
T ss_dssp GG-HHHHHHHHHHHHTCTTTTT--CCEEEEEECTTSSSCCCHHHHHHHHT----CSSC-C--------------------
T ss_pred hh-hhhhhHHHHhhhhhhccCC--ceEEEEeccccccccCCHHHHHHHhh----hhhh-h--------------------
Confidence 65 6677777777766554444 99999999999987776665544322 0000 0
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..........+.+++|||+||+| ++|+++||.+
T Consensus 133 --~~~~~~~~~~~~~~~~SA~tg~G---v~e~~~~l~~ 165 (166)
T d2qtvb1 133 --GSQRIEGQRPVEVFMCSVVMRNG---YLEAFQWLSQ 165 (166)
T ss_dssp --C---CCSSCCEEEEEEBTTTTBS---HHHHHHHHTT
T ss_pred --HHHhhcccCCCEEEEeeCCCCCC---HHHHHHHHhC
Confidence 00001113447899999999999 9999999986
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.7e-28 Score=175.48 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=112.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccceee--EEEEecCc--eEEEEECCCc---hhhhhhhHHHhhhcCC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLKENV--GNFTYEKK--NIKIVDLPGE---DRLRNKFFDQYKSSAK 81 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~~~~--~~~~~~~~--~~~i~D~~G~---~~~~~~~~~~~~~~~d 81 (211)
.+||+++|++|||||||+++|++..+. ...+|++... ..+.+++. .+.+||+++. +++ ++..+++++|
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~---~~~~~~~~~~ 79 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW---LHDHCMQVGD 79 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH---HHHCCCCCCS
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc---cccccccccc
Confidence 479999999999999999999987653 3445655433 34566665 6788997754 443 3566788999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccch
Q psy1914 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++|+|||++++.+ +..+..|+..+....... ++|+++|+||+|+.+.+... +....+.+..+
T Consensus 80 ~~ilvfd~t~~~s-~~~~~~~~~~i~~~~~~~--~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~-------------- 142 (172)
T d2g3ya1 80 AYLIVYSITDRAS-FEKASELRIQLRRARQTE--DIPIILVGNKSDLVRCREVSVSEGRACAVVFD-------------- 142 (172)
T ss_dssp EEEEEEETTCHHH-HHHHHHHHHHHHTSGGGT--TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT--------------
T ss_pred eeeeeecccccch-hhhhhhhhhhhhhccccC--CceEEEEeccccccccccccHHHHHHHHHHcC--------------
Confidence 9999999999655 888888888877654333 49999999999998765432 22233333332
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| |++++++|.+
T Consensus 143 ------------------------~~~~e~Sak~g~~---i~~~f~~l~~ 165 (172)
T d2g3ya1 143 ------------------------CKFIETSAAVQHN---VKELFEGIVR 165 (172)
T ss_dssp ------------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------------CeEEEEeCCCCcC---HHHHHHHHHH
Confidence 6899999999999 9999998764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.3e-28 Score=180.00 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=94.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|.+|||||||+++++.+.+...+ ||.+... ..+..++. .+.+||++|++.+.. .+..+++.+|++++|
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ilv 80 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-VRPLSYPDSDAVLIC 80 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-TGGGGCTTCSEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccc-cccchhhhhhhhhee
Confidence 579999999999999999999999987776 5554333 33555555 788999999999988 678889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
||++++++ ++....+|...+.... .++|+++|+||+|+...
T Consensus 81 ~d~~~~~S-f~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~ 121 (179)
T d1m7ba_ 81 FDISRPET-LDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTD 121 (179)
T ss_dssp EETTCHHH-HHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGC
T ss_pred eecccCCC-HHHHHHHHHHHHhccC---CcceEEEEEeccccccc
Confidence 99999665 8888888877665322 34999999999998643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.95 E-value=2.2e-27 Score=173.46 Aligned_cols=174 Identities=20% Similarity=0.274 Sum_probs=125.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
..+++.||+++|++|||||||+++|.++.+....|+.+.+...+.+++..+..||++++..+.. .+..++...++++++
T Consensus 9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 87 (186)
T d1f6ba_ 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARR-VWKNYLPAINGIVFL 87 (186)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CC-GGGGGGGGCSEEEEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhh-HHhhhhcccceeeee
Confidence 4577899999999999999999999999988888888888888888888999999999998887 577888899999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy1914 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++... ......++..........+ +|+++++||.|++......++.+.+.. ..........
T Consensus 88 ~d~~d~~~-~~~~~~~~~~~~~~~~~~~--~~~li~~~K~D~~~~~~~~~i~~~~~~----~~~~~~~~~~--------- 151 (186)
T d1f6ba_ 88 VDCADHER-LLESKEELDSLMTDETIAN--VPILILGNKIDRPEAISEERLREMFGL----YGQTTGKGSV--------- 151 (186)
T ss_dssp EETTCGGG-HHHHHHHHHHHHTCGGGTT--SCEEEEEECTTSTTCCCHHHHHHHHTC----TTTCCCSSCC---------
T ss_pred eeccCccc-hHHHHHHHHHhhcccccCC--CceEEEEeccCccccCCHHHHHHHHhh----cccchhhhhh---------
Confidence 99998655 6666666666665554455 999999999999887776655443321 0000000000
Q ss_pred cccCCCCCCeeecC-CCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 167 TFLGNPDKDFEFSD-LYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.... -...+.+++|||+||+| |+|+++||.+
T Consensus 152 ----------~~~~~~~~~~~~~~~SA~tg~G---i~e~~~~l~~ 183 (186)
T d1f6ba_ 152 ----------SLKELNARPLEVFMCSVLKRQG---YGEGFRWMAQ 183 (186)
T ss_dssp ----------CTTTCCSCCEEEEECBTTTTBS---HHHHHHHHHT
T ss_pred ----------hHHHhhcCCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 0000 13458899999999999 9999999986
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.2e-27 Score=172.80 Aligned_cols=156 Identities=11% Similarity=0.127 Sum_probs=113.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE-EEEecCc--eEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.-+.+||+++|++|||||||+++++++.+....++.+..+. .+..++. .+.+|||+|+..+. |++.+|++|
T Consensus 2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~------~~~~ad~~i 75 (175)
T d2bmja1 2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK------FSGWADAVI 75 (175)
T ss_dssp CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH------HHHHCSEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc------cccccceeE
Confidence 34679999999999999999999999998766666665544 3677776 78999999987543 467799999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC--HH-HHHHHHHHHHHHHhhhcccccccchh
Q psy1914 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS--SS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|||+++..+ ++.+..|...+.........++|+++|+||.|+..... .. +....+.+.
T Consensus 76 lVfd~~~~~S-f~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~----------------- 137 (175)
T d2bmja1 76 FVFSLEDENS-FQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCAD----------------- 137 (175)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHT-----------------
T ss_pred EEeecccchh-hhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHH-----------------
Confidence 9999999654 88877776665432222234589999999999854332 21 111112110
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.|++|||++|.| ++++|..|.+
T Consensus 138 --------------------~~~~~~~e~SAk~~~~---v~~~F~~l~~ 163 (175)
T d2bmja1 138 --------------------MKRCSYYETCATYGLN---VDRVFQEVAQ 163 (175)
T ss_dssp --------------------STTEEEEEEBTTTTBT---HHHHHHHHHH
T ss_pred --------------------hCCCeEEEeCCCCCcC---HHHHHHHHHH
Confidence 1237899999999999 9999987753
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.95 E-value=1.8e-26 Score=166.05 Aligned_cols=161 Identities=22% Similarity=0.364 Sum_probs=129.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+++||+++|++|||||||+++|+++.+....++.+........++..+.+||.+|...... .+..++...+++++++|
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP-YWRCYYSNTDAVIYVVD 81 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGG-GGGGGCTTCSEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccc-cchhhhhhhhhhhhhhh
Confidence 35799999999999999999999999998888888888888888888999999999998888 57778888999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy1914 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
+.+... ......++........... .|+++++||.|+.......++...+....
T Consensus 82 ~~~~~~-~~~~~~~~~~~~~~~~~~~--~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~----------------------- 135 (169)
T d1upta_ 82 SCDRDR-IGISKSELVAMLEEEELRK--AILVVFANKQDMEQAMTSSEMANSLGLPA----------------------- 135 (169)
T ss_dssp TTCCTT-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHHTGGG-----------------------
T ss_pred hhhcch-hhhccchhhhhhhhhcccc--ceEEEEEeeccccccccHHHHHHHHHHHH-----------------------
Confidence 988555 5566666666655544444 89999999999988776655444332100
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++++|||++|+| |+++++||.+
T Consensus 136 -----------~~~~~~~~~~~SA~~g~g---v~e~~~~l~~ 163 (169)
T d1upta_ 136 -----------LKDRKWQIFKTSATKGTG---LDEAMEWLVE 163 (169)
T ss_dssp -----------CTTSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------HhcCCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 012348999999999999 9999999965
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=1.7e-25 Score=165.41 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=101.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
+++||+++|..|||||||+++|..+.+. ..||+|.+...+......+.+||++|++.++. .|..+++.++++++++|.
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~~~~~ 78 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERR-KWIHCFENVTSIMFLVAL 78 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEEECSSCEEEEEECCCSTTGGG-GGGGGCSSCSEEEEEEEG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEEeccceeeeeccccccccccc-cccccccccceeeEeeec
Confidence 4689999999999999999999988774 56999999888888888999999999999999 799999999999999999
Q ss_pred CCch---------hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 90 STVQ---------KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 90 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
++.. ..+.+....|..++......+ +|+++++||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~--~~~~~v~NK~Dl~~ 126 (200)
T d2bcjq2 79 SEYDQVLVESDNENRMEESKALFRTIITYPWFQN--SSVILFLNKKDLLE 126 (200)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSS--SEEEEEEECHHHHH
T ss_pred cchhhhhhhhccccchHHHHHHHHHHHhhhhccC--ccEEEecchhhhhh
Confidence 8743 236677888888887766656 99999999999854
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.6e-25 Score=165.67 Aligned_cols=195 Identities=25% Similarity=0.392 Sum_probs=129.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHh----hhcCCEEEE
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQY----KSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~----~~~~d~ii~ 85 (211)
.+++|+++|++|||||||+|+|+++++.+.. |.......++.++..+.+||+||++.++. .+..+ ...++.+++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~t-t~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~~~~~i~ 79 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSGVTLVDFPGHVKLRY-KLSDYLKTRAKFVKGLIF 79 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETTGGGSSCEEEECCCCGGGTH-HHHHHHHHHGGGEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCeE-EecceEEEEEeCCeEEEEEecccccchhh-HHHHHHHHHhhhccccce
Confidence 4689999999999999999999998765432 33344555667777999999999987766 34443 344689999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch----
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN---- 160 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---- 160 (211)
++|+.+....+.....++...+.. ......++|+++|+||+|+.+......+.+.+++++..+.......+....
T Consensus 80 ~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 159 (209)
T d1nrjb_ 80 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKIN 159 (209)
T ss_dssp EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred EEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHHHHHHHHHHHHHHHHHHHcCCCceeeeccc
Confidence 999886444466666665444321 012234599999999999998887777777776666554433322221111
Q ss_pred hh--cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DV--AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.. .............|.|+.+...+.+++.|++.+. ++++.+||.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~i~e 207 (209)
T d1nrjb_ 160 EEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKRK----ISQWREWIDE 207 (209)
T ss_dssp --------CTTC----CCCGGGSSSCEEEEECBTTTTB----CHHHHHHHHH
T ss_pred hhhhHHHHHHhhccccccchhhCcCCceEEEEeecccc----HHHHHHHHHH
Confidence 11 1111122223456778888899999999988865 8999999975
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=8.8e-25 Score=159.21 Aligned_cols=150 Identities=21% Similarity=0.201 Sum_probs=102.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc--cccc--ccceeeEEEEecCceEEEEECCCchhh--------hhhhHHHhhhc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF--ESCT--SLKENVGNFTYEKKNIKIVDLPGEDRL--------RNKFFDQYKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~~ 79 (211)
..|+++|.+|||||||+|+|++.+.. ...+ |...........+..+.+|||||.... .. ....++.+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~-~~~~~~~~ 84 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQ-EVYEALAD 84 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHH-HHHHHTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccc-cccccccc
Confidence 47999999999999999999987642 2222 333344446677779999999998332 22 23345678
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++|+|++++.. ....++...++.. . .++|+++|+||+|+.... .+..+.+.+.+
T Consensus 85 ad~il~v~D~~~~~~---~~~~~i~~~l~~~-~--~~~piilv~NK~Dl~~~~--~~~~~~~~~~~-------------- 142 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPT---PEDELVARALKPL-V--GKVPILLVGNKLDAAKYP--EEAMKAYHELL-------------- 142 (178)
T ss_dssp CSEEEEEEETTSCCC---HHHHHHHHHHGGG-T--TTSCEEEEEECGGGCSSH--HHHHHHHHHTS--------------
T ss_pred ccceeeeechhhhhc---ccccchhhheecc-c--cchhhhhhhcccccccCH--HHHHHHHHhhc--------------
Confidence 999999999987543 2334455555432 1 238999999999996542 22222222111
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++.+||++|+| +++|+++|.+
T Consensus 143 -----------------------~~~~~~~iSA~~~~g---i~~L~~~i~~ 167 (178)
T d1wf3a1 143 -----------------------PEAEPRMLSALDERQ---VAELKADLLA 167 (178)
T ss_dssp -----------------------TTSEEEECCTTCHHH---HHHHHHHHHT
T ss_pred -----------------------ccCceEEEecCCCCC---HHHHHHHHHH
Confidence 114567899999999 9999999976
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=8.7e-25 Score=160.89 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=94.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
+++||+++|..|||||||+++|..+.+ ||++.....+..+...+.+||++|++.++. ++..|++.++++++|+|.
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~-~~~~~~~~~~~~i~v~d~ 75 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVAL 75 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGG-GGGGGCTTCSEEEEEEEG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeecccccccccc-chhhcccCCceeeeEEee
Confidence 468999999999999999999986544 566677777888888999999999999999 799999999999999999
Q ss_pred CCchh---------hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 90 STVQK---------TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 90 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
++..+ .+.+...+|..++....... .|+++++||+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~--~~~~lv~Nk~d~~ 122 (195)
T d1svsa1 76 SDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD--TSIILFLNKKDLF 122 (195)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTT--SEEEEEEECHHHH
T ss_pred cccchHHHHhhhhHHHHHHHHHHHHHhcccccCC--CCEEEEeccchhh
Confidence 87542 24566777888877655555 9999999999973
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.92 E-value=1.1e-24 Score=158.91 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=105.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccccc----------ccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCT----------SLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKS 78 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~----------t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 78 (211)
.++++|+++|++|+|||||+|+|++.......+ +.......+..++..+.++|+||+..+.. .....+.
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~l~ 81 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIR-AVVSAAD 81 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHH-HHHHHTT
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccccccc-chhhhhh
Confidence 467899999999999999999999644322111 11122333455666899999999999888 4666778
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++++|+++... .+..+.+..+.. .++|+++|+||+|+.+..........+...+.. .. .
T Consensus 82 ~~d~~ilv~d~~~g~~--~~~~~~~~~~~~------~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~----~~-~--- 145 (179)
T d1wb1a4 82 IIDLALIVVDAKEGPK--TQTGEHMLILDH------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS----TH-N--- 145 (179)
T ss_dssp SCCEEEEEEETTTCSC--HHHHHHHHHHHH------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH----SS-S---
T ss_pred hccccccccccccccc--hhhhhhhhhhhh------cCCcceeccccccccCHHHHHHHHHHHHHHHHH----hh-c---
Confidence 8999999999987543 233333333322 238999999999997654333222222222211 00 0
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| +++|+++|.+
T Consensus 146 -----------------------~~~~~iv~iSA~~g~g---i~eL~~~I~~ 171 (179)
T d1wb1a4 146 -----------------------LKNSSIIPISAKTGFG---VDELKNLIIT 171 (179)
T ss_dssp -----------------------GGGCCEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------------CCCCeEEEEEccCCcC---HHHHHHHHHh
Confidence 1126789999999999 9999999865
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=7.4e-24 Score=151.43 Aligned_cols=145 Identities=20% Similarity=0.196 Sum_probs=100.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc--cc--cccceeeEEEEecCceEEEEECCCchh--------h-hhhhHHHhhh
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFE--SC--TSLKENVGNFTYEKKNIKIVDLPGEDR--------L-RNKFFDQYKS 78 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~-~~~~~~~~~~ 78 (211)
+||+++|.+|||||||+|+|++.+... .. .+.......+..++..+.+|||||... . .. .....+.
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~-~~~~~~~ 79 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIE-RTLQEIE 79 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHH-HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHH-HHHHHHH
Confidence 589999999999999999999766422 22 233334555777888999999999521 1 11 1222456
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy1914 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|++++.. .+...... .+ .. .|+++++||+|+.+.....+....+ .
T Consensus 80 ~ad~ii~v~d~~~~~~--~~~~~~~~-~~-----~~--~~~i~~~~k~d~~~~~~~~~~~~~~----~------------ 133 (160)
T d1xzpa2 80 KADIVLFVLDASSPLD--EEDRKILE-RI-----KN--KRYLVVINKVDVVEKINEEEIKNKL----G------------ 133 (160)
T ss_dssp HCSEEEEEEETTSCCC--HHHHHHHH-HH-----TT--SSEEEEEEECSSCCCCCHHHHHHHH----T------------
T ss_pred hCCEEEEEEeCCCCcc--hhhhhhhh-hc-----cc--ccceeeeeeccccchhhhHHHHHHh----C------------
Confidence 7999999999998654 22222222 22 12 7899999999998776654433222 1
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| |++|+++|.+
T Consensus 134 ------------------------~~~~~~~vSA~~g~g---i~~L~~~I~k 158 (160)
T d1xzpa2 134 ------------------------TDRHMVKISALKGEG---LEKLEESIYR 158 (160)
T ss_dssp ------------------------CSTTEEEEEGGGTCC---HHHHHHHHHH
T ss_pred ------------------------CCCcEEEEECCCCCC---HHHHHHHHHh
Confidence 114568899999999 9999999864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3.3e-24 Score=153.44 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=100.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--ccccc--cceeeEEEEecCceEEEEECCCchhhh-------hhhHHHhhhc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTS--LKENVGNFTYEKKNIKIVDLPGEDRLR-------NKFFDQYKSS 79 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t--~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 79 (211)
.+||+++|++|||||||+|+|++.+.. ...|. .......+...+..+.+||+||..... ......++..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 479999999999999999999987643 22232 223344577778899999999973211 1123345778
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++++|+.+... ..... .+..++... ..++|+++|+||+|+.+..... .
T Consensus 81 ~d~~i~~~d~~~~~~-~~~~~-~~~~~~~~~---~~~~~iilv~NK~Dl~~~~~~~---------------------~-- 132 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDA-VDPAE-IWPEFIARL---PAKLPITVVRNKADITGETLGM---------------------S-- 132 (161)
T ss_dssp CSEEEEEEETTTCCC-CSHHH-HCHHHHHHS---CTTCCEEEEEECHHHHCCCCEE---------------------E--
T ss_pred ccccceeeccccccc-hhhhh-hhhhhhhhc---ccccceeeccchhhhhhhHHHH---------------------H--
Confidence 999999999987543 22222 223333221 1238999999999986432110 0
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ ....+++++||++|+| |++|+++|.+
T Consensus 133 --------------------~-~~~~~~~~iSAk~~~g---i~~L~~~l~~ 159 (161)
T d2gj8a1 133 --------------------E-VNGHALIRLSARTGEG---VDVLRNHLKQ 159 (161)
T ss_dssp --------------------E-ETTEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------H-hCCCcEEEEECCCCCC---HHHHHHHHHh
Confidence 0 1226889999999999 9999999975
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=7.9e-24 Score=156.50 Aligned_cols=114 Identities=20% Similarity=0.263 Sum_probs=91.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
.+||+++|.+|||||||+++|. -.....||+|.....+.+++..+.+||++|++.++. .+..+++.++++++++|.+
T Consensus 2 ~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERK-RWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC--------CTTSCTTCCEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecc-cccccccccceeEEEEEcC
Confidence 5799999999999999999993 223345899999888999988999999999999998 6899999999999999998
Q ss_pred Cch---------hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 91 TVQ---------KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 91 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
+.. ..+.+...++..++......+ +|+++++||+|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~piilv~NK~Dl~ 124 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN--VSIILFLNKTDLL 124 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT--SEEEEEEECHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcC--ceEEEEeccchhh
Confidence 632 236777888888887765555 9999999999985
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=1.1e-23 Score=153.58 Aligned_cols=151 Identities=24% Similarity=0.301 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccc--cccceeeEEEEe-cCceEEEEECCCchh-------hhhhhHHHhhhcCC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF-ESC--TSLKENVGNFTY-EKKNIKIVDLPGEDR-------LRNKFFDQYKSSAK 81 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~-~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~d 81 (211)
.|+++|.+|||||||+|+|++.... ... .|+...++.... .+..+.+|||||... ...+ ....+..++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~-~l~~~~~~~ 81 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLE-FLRHIARTR 81 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHH-HHHHHTSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHH-HHHHHHhhh
Confidence 5999999999999999999976542 222 344444544444 344899999999532 1121 223456799
Q ss_pred EEEEEEeCCCch-hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 82 GIVYVLDSSTVQ-KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++++++|+.... ........++.... .... ++|+++|+||+|+.......+ +.+.+.
T Consensus 82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~--~~p~iiv~NK~D~~~~~~~~~----~~~~~~-------------- 139 (180)
T d1udxa2 82 VLLYVLDAADEPLKTLETLRKEVGAYD--PALL--RRPSLVALNKVDLLEEEAVKA----LADALA-------------- 139 (180)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHC--HHHH--HSCEEEEEECCTTSCHHHHHH----HHHHHH--------------
T ss_pred hhhhhcccccccccchhhhhhhhhccc--cccc--hhhhhhhhhhhhhhhHHHHHH----HHHHHH--------------
Confidence 999999987632 22222333322211 1112 279999999999975533322 222222
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++.+||+||+| +++|++.|.+
T Consensus 140 ---------------------~~~~~~~~iSA~tg~g---id~L~~~i~~ 165 (180)
T d1udxa2 140 ---------------------REGLAVLPVSALTGAG---LPALKEALHA 165 (180)
T ss_dssp ---------------------TTTSCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------hcCCeEEEEEcCCCCC---HHHHHHHHHH
Confidence 0125778999999999 9999998865
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=3.1e-23 Score=156.02 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=100.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~ 89 (211)
...||+++|++|||||||++++..+.+ .||+|.....+.+++..+.+||++|++.++. .|..++++++++++++|.
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~~---~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~-~w~~~~~~~~~ii~v~d~ 80 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFETKFQVDKVNFHMFDVGGQRDERR-KWIQCFNDVTAIIFVVAS 80 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHHC---CCCCSCEEEEEEETTEEEEEEECCCSTTTTT-GGGGGCTTCSEEEEEEET
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCCc---CCCCCeEEEEEEECcEEEEEEecCccceecc-chhhhcccccceEEEEEc
Confidence 457999999999999999999976544 4889998888999999999999999999999 699999999999999999
Q ss_pred CCch---------hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy1914 90 STVQ---------KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 90 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
++.. ..+.+...+|..++.++.+.+ +|+++++||+|+..
T Consensus 81 s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~--~~iil~~NK~Dl~~ 128 (221)
T d1azta2 81 SSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT--ISVILFLNKQDLLA 128 (221)
T ss_dssp TGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSS--CEEEEEEECHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHhcChhhCC--CcEEEEechhhhhh
Confidence 7532 347788888999998877776 99999999999963
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=2.4e-22 Score=146.64 Aligned_cols=155 Identities=21% Similarity=0.340 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc-cccccccceeeEEEEecCceEEEEECCCch-----------hhhhh---hHHHhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKY-FESCTSLKENVGNFTYEKKNIKIVDLPGED-----------RLRNK---FFDQYK 77 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~---~~~~~~ 77 (211)
.|+++|++|||||||+|+|++.+. ...+|.++.....+.. ..+.+|||||.. .+... ......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccc--ccceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 689999999999999999998765 2334433333334444 357899999951 11111 223345
Q ss_pred hcCCEEEEEEeCCCchhhHHHH--------HHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHh
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDV--------AESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 149 (211)
+.+|++++|+|++.+....... ...+...+.. .++|+++|+||+|+.... +.....+...+..
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-----~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~-- 150 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKNV--QEVINFLAEKFEV-- 150 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSCH--HHHHHHHHHHHTC--
T ss_pred cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH-----cCCCEEEEEeeeehhhhH--HHHHHHHHHHhcc--
Confidence 6799999999997532211110 1112222221 238999999999986432 2222222222210
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
... .....++++||++|+| +++|+++|.+
T Consensus 151 -----~~~------------------------~~~~~~~~vSA~~g~g---i~~L~~~i~~ 179 (184)
T d2cxxa1 151 -----PLS------------------------EIDKVFIPISAKFGDN---IERLKNRIFE 179 (184)
T ss_dssp -----CGG------------------------GHHHHEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----ccc------------------------ccCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 000 1114567899999999 9999999976
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=2.4e-22 Score=146.95 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=101.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc--cccc--ccceeeEEEEecCceEEEEECCCchhhhh-----------hhH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRN-----------KFF 73 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 73 (211)
+..+||+++|.+|||||||+|+|++.+.. ...+ +.......+.+++..+.++|+||...... ...
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 85 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 85 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence 45689999999999999999999986642 2222 22334455788888999999999743211 023
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH--HHHHHHHHHHHHHHhhh
Q psy1914 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS--SVVKTLLQKELNLVRRT 151 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~ 151 (211)
...++.+|++++|+|++.+.. .+...+ ...+.. .+.|+++|+||+|+....+. .+..+.+.+.+..
T Consensus 86 ~~~~~~~dvii~v~d~~~~~~--~~~~~~-~~~~~~-----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~---- 153 (186)
T d1mkya2 86 VDSIEKADVVVIVLDATQGIT--RQDQRM-AGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF---- 153 (186)
T ss_dssp HHHHHHCSEEEEEEETTTCCC--HHHHHH-HHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG----
T ss_pred HHHHhcCCEEEEeecccccch--hhHHHH-HHHHHH-----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcc----
Confidence 334677999999999987443 222222 222221 23899999999999755432 2222222221110
Q ss_pred cccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 152 KSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++.+||++|.| +++|+++|.+
T Consensus 154 ------------------------------~~~~~i~~vSa~~g~g---v~~L~~~i~~ 179 (186)
T d1mkya2 154 ------------------------------IDYSPLIFTSADKGWN---IDRMIDAMNL 179 (186)
T ss_dssp ------------------------------GTTSCEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------------------cCCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 0114678999999999 9999999965
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.88 E-value=6.8e-23 Score=151.28 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=102.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc--cc----ccccceeeEEE-----------------------EecCceEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF--ES----CTSLKENVGNF-----------------------TYEKKNIK 58 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~----~~t~~~~~~~~-----------------------~~~~~~~~ 58 (211)
+++.++|+++|+.++|||||+++|++.... .. ..|........ +.....+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 567889999999999999999999863311 00 01111111111 11112589
Q ss_pred EEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH
Q psy1914 59 IVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK 138 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 138 (211)
++|||||..|..+ ....+..+|++++|+|+.+... .+...+.+..... ... .+++++.||+|+.+.....+..
T Consensus 82 ~iDtPGh~~f~~~-~~~~~~~~d~~ilvvda~~g~~-~~~t~e~~~~~~~---~~~--~~iiv~inK~D~~d~~~~~~~~ 154 (195)
T d1kk1a3 82 FIDAPGHEALMTT-MLAGASLMDGAILVIAANEPCP-RPQTREHLMALQI---IGQ--KNIIIAQNKIELVDKEKALENY 154 (195)
T ss_dssp EEECSSHHHHHHH-HHHCGGGCSEEEEEEETTSCSS-CHHHHHHHHHHHH---HTC--CCEEEEEECGGGSCHHHHHHHH
T ss_pred eeccchhhhhhHH-hhcccccccccccccchhhhhh-hhhhHHHHHHHHH---hcC--ccceeeeecccchhhHHHHHHH
Confidence 9999999999984 5556677999999999987532 1233333333221 111 4588899999997654333333
Q ss_pred HHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 139 TLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+.+.. . ....++++++||++|+| +++|++.|.+
T Consensus 155 ~~~~~~~~~---~-----------------------------~~~~~~iIpiSA~~G~n---i~~Ll~~I~~ 191 (195)
T d1kk1a3 155 RQIKEFIEG---T-----------------------------VAENAPIIPISALHGAN---IDVLVKAIED 191 (195)
T ss_dssp HHHHHHHTT---S-----------------------------TTTTCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred HHHHHHhcc---c-----------------------------cCCCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 233222220 0 01237889999999999 9999998865
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.88 E-value=1.7e-22 Score=152.52 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-c--ccceee------------------EEEEecCceEEEEECCCchhh
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-T--SLKENV------------------GNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~--t~~~~~------------------~~~~~~~~~~~i~D~~G~~~~ 68 (211)
+.+.|+++|.+++|||||+++|++....... . +..... ..+..++..+.++|||||..|
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f 83 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence 3456999999999999999999864321100 0 100001 112234458999999999988
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
... ....+..+|++|+|+|+.+... .+....+..+.. .++|+++|+||+|+....
T Consensus 84 ~~~-~~~~~~~~D~~ilVvda~~g~~--~~~~~~~~~~~~------~~~p~iivlNK~D~~~~~ 138 (227)
T d1g7sa4 84 TTL-RKRGGALADLAILIVDINEGFK--PQTQEALNILRM------YRTPFVVAANKIDRIHGW 138 (227)
T ss_dssp TTS-BCSSSBSCSEEEEEEETTTCCC--HHHHHHHHHHHH------TTCCEEEEEECGGGSTTC
T ss_pred ccc-chhcccccceEEEEEecccCcc--cchhHHHHHhhc------CCCeEEEEEECccCCCch
Confidence 774 4456677999999999987433 233333333332 238999999999997654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=3.2e-22 Score=144.52 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc--cccc--ccceeeEEEEecCceEEEEECCCch--------hhhhhhHHHhhhcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSKYF--ESCT--SLKENVGNFTYEKKNIKIVDLPGED--------RLRNKFFDQYKSSA 80 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~~ 80 (211)
.|+++|++|||||||+|+|++.... ...+ |.......+......+.+||++|.. .+.......++..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 6999999999999999999986643 2222 3333445566777789999999952 11121344456789
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy1914 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
|++++++|+++... ... .++...++. .++|+++|+||+|+.+. ....+..++...
T Consensus 82 d~i~~~~~~~~~~~--~~~-~~~~~~l~~-----~~~pviiv~NK~Dl~~~-----~~~~~~~~~~~~------------ 136 (171)
T d1mkya1 82 DLVLFVVDGKRGIT--KED-ESLADFLRK-----STVDTILVANKAENLRE-----FEREVKPELYSL------------ 136 (171)
T ss_dssp SEEEEEEETTTCCC--HHH-HHHHHHHHH-----HTCCEEEEEESCCSHHH-----HHHHTHHHHGGG------------
T ss_pred cEEEEeeccccccc--ccc-ccccccccc-----ccccccccchhhhhhhh-----hhhHHHHHHHhc------------
Confidence 99999999976443 122 223333322 22899999999998632 111111111100
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++||++|.| +++|++||.+
T Consensus 137 ----------------------~~~~~i~iSAk~g~g---id~L~~~i~~ 161 (171)
T d1mkya1 137 ----------------------GFGEPIPVSAEHNIN---LDTMLETIIK 161 (171)
T ss_dssp ----------------------SSCSCEECBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------CCCCeEEEecCCCCC---HHHHHHHHHH
Confidence 002347799999999 9999999975
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=1.3e-21 Score=144.20 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=93.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc---ccccccceeeEEEEecCceEEEEECCCchh-------------hhhhhHHH
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF---ESCTSLKENVGNFTYEKKNIKIVDLPGEDR-------------LRNKFFDQ 75 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~ 75 (211)
++|+++|++|||||||+|+|++.+.. ...++.......... ...+.+.|++|... +.. ....
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~ 101 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIE-TYIT 101 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-cccceEEEEEeeccccccccccchhhhHHh-hhhc
Confidence 48999999999999999999986532 222332222222222 23566788877411 111 1222
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
....++++++++|++.+.. ....+. ...++. .++|+++|+||+|+.......+..+.+.+.+.
T Consensus 102 ~~~~~~~vi~viD~~~~~~--~~~~~~-~~~l~~-----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~--------- 164 (195)
T d1svia_ 102 TREELKAVVQIVDLRHAPS--NDDVQM-YEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN--------- 164 (195)
T ss_dssp HCTTEEEEEEEEETTSCCC--HHHHHH-HHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT---------
T ss_pred cccchhhhhhhhhcccccc--cccccc-cccccc-----ccCcceechhhccccCHHHHHHHHHHHHHHhc---------
Confidence 3345799999999976432 122222 222222 23899999999999766655554444443332
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++.+||++|+| +++|+++|.+
T Consensus 165 -------------------------~~~~~~~~~~SA~~~~g---i~el~~~i~~ 191 (195)
T d1svia_ 165 -------------------------IDPEDELILFSSETKKG---KDEAWGAIKK 191 (195)
T ss_dssp -------------------------CCTTSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------------ccCCCCEEEEeCCCCCC---HHHHHHHHHH
Confidence 12336789999999999 9999999976
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=8.8e-23 Score=149.30 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=96.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cc--ccccceeeEEEEecC-ceEEEEECCCchhhh-------hhhHHHhhhcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYF-ES--CTSLKENVGNFTYEK-KNIKIVDLPGEDRLR-------NKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~-------~~~~~~~~~~~ 80 (211)
.+|+++|++|||||||+|+|++.+.. .. ..|.....+...+.+ ..+.+|||||+.... ..+.. .+..+
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~-~~~~~ 80 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLR-HIERT 80 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHH-HHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHH-HHHHh
Confidence 36999999999999999999876642 22 235555666666654 489999999973211 11222 34558
Q ss_pred CEEEEEEeCCCchh--hHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 81 KGIVYVLDSSTVQK--TLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.++++++...... ....... ............ ++|+++|+||+|+.+.. ...+.+.+.+
T Consensus 81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~kp~ivv~NK~Dl~~~~---~~~~~~~~~~------------ 143 (185)
T d1lnza2 81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT--ERPQIIVANKMDMPEAA---ENLEAFKEKL------------ 143 (185)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT--TSCBCBEEECTTSTTHH---HHHHHHHHHC------------
T ss_pred hhhhheeeecccccchhhhhhhhhhhccchhhhhcc--CCcchhhccccchHhHH---HHHHHHHHHh------------
Confidence 99999987764321 1111111 112222222233 38999999999997532 1112222111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++.+||++|+| +++|+++|.+
T Consensus 144 ------------------------~~~~~v~~iSA~~g~G---i~~L~~~i~~ 169 (185)
T d1lnza2 144 ------------------------TDDYPVFPISAVTREG---LRELLFEVAN 169 (185)
T ss_dssp ------------------------CSCCCBCCCSSCCSST---THHHHHHHHH
T ss_pred ------------------------ccCCcEEEEECCCCCC---HHHHHHHHHH
Confidence 1225678899999999 9999999864
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.87 E-value=1.9e-21 Score=144.45 Aligned_cols=163 Identities=14% Similarity=0.092 Sum_probs=102.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccc------cccc--cceeeEEE--------------------------E
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFE------SCTS--LKENVGNF--------------------------T 51 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~------~~~t--~~~~~~~~--------------------------~ 51 (211)
.+.+++++|+++|+.++|||||+++|++..... ...+ .+.....+ .
T Consensus 3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (205)
T d2qn6a3 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 82 (205)
T ss_dssp CCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred CCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccc
Confidence 356788999999999999999999998632110 0000 00000000 0
Q ss_pred ecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 52 YEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
...+.+.++|+|||..|..+ ....+..+|.+|+|+|+.+.-. ..+..+.+...... .. .|+++++||+|+.+.
T Consensus 83 ~~~r~~~iiD~PGH~df~~~-~~~~~~~ad~ailvVda~~gi~-~~~t~e~~~~~~~~---~i--~~iIV~vNK~Dl~~~ 155 (205)
T d2qn6a3 83 KFLRRISFIDAPGHEVLMAT-MLSGAALMDGAILVVAANEPFP-QPQTREHFVALGII---GV--KNLIIVQNKVDVVSK 155 (205)
T ss_dssp EEEEEEEEEECSCHHHHHHH-HHHTSSCCSEEEEEEETTSCSS-CHHHHHHHHHHHHT---TC--CCEEEEEECGGGSCH
T ss_pred cceEEEEEeccchHHHHHhh-hhcceecccccccccccccccc-chhHHHHHHHHHHc---CC--ceeeeccccCCCccc
Confidence 01126899999999999885 5556677999999999987421 12333333333221 11 588999999999765
Q ss_pred CCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 132 KSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.........+.+.+.. . ...+++++++||++|.| |++|++.|.+
T Consensus 156 ~~~~~~~~~~~~~l~~---~-----------------------------~~~~~p~ipiSA~~g~n---I~~L~e~i~~ 199 (205)
T d2qn6a3 156 EEALSQYRQIKQFTKG---T-----------------------------WAENVPIIPVSALHKIN---IDSLIEGIEE 199 (205)
T ss_dssp HHHHHHHHHHHHHHTT---S-----------------------------TTTTCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcc---c-----------------------------cCCCCeEEEEeCCCCCC---hHHHHHHHHh
Confidence 4433333333222220 0 01237889999999999 9999988764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.86 E-value=2.2e-21 Score=142.78 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC-----c--c---------c-cc--ccccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS-----K--Y---------F-ES--CTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~-----~--~---------~-~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
+++++|+++|..++|||||+++|+.. . . . +. ..|+......+.+.+..++++|||||..|.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence 46789999999999999999999741 0 0 0 00 012222334456677799999999999998
Q ss_pred hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
.+ ....+..+|++++|+|+.+... .+..+.+..+... .. .|++++.||+|+...
T Consensus 81 ~~-~~~~~~~aD~allVVda~~G~~--~QT~~~~~~a~~~---~~--~~iIv~iNK~D~~~~ 134 (196)
T d1d2ea3 81 KN-MITGTAPLDGCILVVAANDGPM--PQTREHLLLARQI---GV--EHVVVYVNKADAVQD 134 (196)
T ss_dssp HH-HHHTSSCCSEEEEEEETTTCSC--HHHHHHHHHHHHT---TC--CCEEEEEECGGGCSC
T ss_pred HH-HHHHHhhcCeEEEEEEcCCCCc--hhHHHHHHHHHHh---cC--CcEEEEEeccccccc
Confidence 85 5556677999999999988543 4555555554332 12 579999999999753
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.82 E-value=3.7e-19 Score=133.13 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=79.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--cccc----------------------------------cccccceeeEEEE
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--KYFE----------------------------------SCTSLKENVGNFT 51 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~----------------------------------~~~t~~~~~~~~~ 51 (211)
++..+||+++|..++|||||+++|+.. .... ...|+......+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 456789999999999999999999631 1000 0012222233455
Q ss_pred ecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCC-cEEEEEeCCCccC
Q psy1914 52 YEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRV-NILVCCNKQDQTL 130 (211)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~ 130 (211)
..+..+.++|+|||..|..++ ......+|++++|+|+.+... .+..+.+...... ++ .++++.||+|+.+
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~-~~g~~~aD~ailVvda~~G~~--~Qt~e~~~~~~~~------gv~~iiv~vNK~D~~~ 156 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNM-ATGASTCDLAIILVDARYGVQ--TQTRRHSYIASLL------GIKHIVVAINKMDLNG 156 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHH-HHHHTTCSEEEEEEETTTCSC--HHHHHHHHHHHHT------TCCEEEEEEECTTTTT
T ss_pred ccceEEEEEeccchhhhhhhh-ccccccCceEEEEeccccCcc--cchHHHHHHHHHc------CCCEEEEEEEcccccc
Confidence 666799999999999999864 445667999999999987543 4455544443321 14 4889999999976
Q ss_pred CC
Q psy1914 131 AK 132 (211)
Q Consensus 131 ~~ 132 (211)
..
T Consensus 157 ~~ 158 (222)
T d1zunb3 157 FD 158 (222)
T ss_dssp SC
T ss_pred cc
Confidence 44
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=3.5e-19 Score=131.86 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--------ccc-----cc-------ccccceeeEEEEecCceEEEEECCCchhh
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS--------KYF-----ES-------CTSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--------~~~-----~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
+++++|+++|..++|||||+++|+.. ... .. ..|+......+.+++..++++|||||..|
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 46789999999999999999999731 000 00 12444555677888899999999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCC
Q psy1914 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLA 131 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 131 (211)
..+ ....+..+|++|+|+|+.+... .+..+.|..+... ++| +++++||+|+.+.
T Consensus 81 ~~~-~~~~~~~aD~avlVvda~~Gv~--~qt~~~~~~~~~~------gi~~iiv~iNK~D~~~~ 135 (204)
T d2c78a3 81 IKN-MITGAAQMDGAILVVSAADGPM--PQTREHILLARQV------GVPYIVVFMNKVDMVDD 135 (204)
T ss_dssp HHH-HHHHHTTCSSEEEEEETTTCCC--HHHHHHHHHHHHT------TCCCEEEEEECGGGCCC
T ss_pred HHH-HHHHHHHCCEEEEEEECCCCCc--HHHHHHHHHHHHc------CCCeEEEEEEecccCCC
Confidence 986 4556777999999999987543 4555555555432 255 7778999999753
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.79 E-value=9.3e-19 Score=131.45 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=97.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--cc--------------------------------ccccccceeeEEEEecC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSK--YF--------------------------------ESCTSLKENVGNFTYEK 54 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 54 (211)
+++++|+++|..++|||||+.+|+... .. ....|+......+++++
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 80 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 80 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence 457899999999999999999996310 00 00012333344567777
Q ss_pred ceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchh-----hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQK-----TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..++++|||||..|..+ ......-+|++++|+|+.+... ...++.+.+..... +.. .+++++.||+|+.
T Consensus 81 ~~i~iiDtPGH~df~~~-~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~---~~~--~~iIv~iNK~D~~ 154 (224)
T d1jnya3 81 YFFTIIDAPGHRDFVKN-MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---MGL--DQLIVAVNKMDLT 154 (224)
T ss_dssp CEEEECCCSSSTTHHHH-HHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---TTC--TTCEEEEECGGGS
T ss_pred ceeEEeeCCCcHHHHHH-HHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH---hCC--CceEEEEEcccCC
Confidence 89999999999999995 5666777999999999987421 01233333333221 111 4688899999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCC
Q psy1914 130 LAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSAS 197 (211)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g 197 (211)
.........+.+...+..+...... -..+++++++||.+|.|
T Consensus 155 ~~~~~~~~~~~v~~~i~~~~~~~~~--------------------------~~~~i~~IPISA~~G~N 196 (224)
T d1jnya3 155 EPPYDEKRYKEIVDQVSKFMRSYGF--------------------------NTNKVRFVPVVAPSGDN 196 (224)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTC--------------------------CCTTCEEEECBTTTTBT
T ss_pred CccccHHHHHHHHHHHHhHHHhcCC--------------------------CcccCeEEEEEccCCCC
Confidence 6554444344444333321111100 02237889999999998
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.77 E-value=1.1e-18 Score=132.63 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=89.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--cccc--------------------------------cccccceeeEEEEec
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--KYFE--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.+++++|+++|..++|||||+.+|+.. .... ...++......+.++
T Consensus 21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~ 100 (245)
T d1r5ba3 21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 100 (245)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence 345778999999999999999999521 1000 001222223345566
Q ss_pred CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhh-----HHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKT-----LRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+..+.++|||||..|..+ .......+|++++|+|+.+.... ..++.+.+...... .- .++++++||+|+
T Consensus 101 ~~~i~~iDtPGH~df~~~-~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i--~~iiv~iNKmD~ 174 (245)
T d1r5ba3 101 HRRFSLLDAPGHKGYVTN-MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GI--NHLVVVINKMDE 174 (245)
T ss_dssp SEEEEECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TC--SSEEEEEECTTS
T ss_pred cceeeeecccccccchhh-hhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CC--CeEEEEEEcCCC
Confidence 679999999999999885 44556679999999999773210 11344444333221 11 348899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHH
Q psy1914 129 TLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQL 204 (211)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l 204 (211)
......+...+.+.+++...... ... .+ ....++++++||++|+| |.++
T Consensus 175 ~~~~~~e~~~~ei~~~l~~~l~~-i~~---~~--------------------~~~~v~~VPiSA~~G~n---I~~~ 223 (245)
T d1r5ba3 175 PSVQWSEERYKECVDKLSMFLRR-VAG---YN--------------------SKTDVKYMPVSAYTGQN---VKDR 223 (245)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHH-HHC---CC--------------------HHHHEEEEECBTTTTBT---TSSC
T ss_pred CccchhHHHHHHHHHHHHHHHHH-HhC---cC--------------------cccCCEEEEeeccCCCC---cccc
Confidence 86554333333332222211000 000 00 01138999999999999 8764
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=3.6e-18 Score=123.49 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=92.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc--c-cccceeeEE-EEecCceEEEEECCCchhhhhhhHHH--------hhhc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKYFES--C-TSLKENVGN-FTYEKKNIKIVDLPGEDRLRNKFFDQ--------YKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~-~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~--------~~~~ 79 (211)
-.|+++|.+|||||||+|+|++.+.... . .|+...... ...+...+..+|++|........... +...
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 85 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence 3589999999999999999998764311 1 233333333 44455577888998874332211111 1235
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy1914 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+++++++.|+.+... ....+...+.. ...|.++|+||+|+..... ......+....
T Consensus 86 ~~~~l~~~d~~~~~~---~~~~~~~~l~~------~~~~~i~v~~k~d~~~~~~--~~~~~~~~~~~------------- 141 (179)
T d1egaa1 86 VELVIFVVEGTRWTP---DDEMVLNKLRE------GKAPVILAVNKVDNVQEKA--DLLPHLQFLAS------------- 141 (179)
T ss_dssp EEEEEEEEETTCCCH---HHHHHHHHHHS------SSSCEEEEEESTTTCCCHH--HHHHHHHHHHT-------------
T ss_pred cceeEEEEecCccch---hHHHHHHHhhh------ccCceeeeeeeeeccchhh--hhhhHhhhhhh-------------
Confidence 788888888876332 22233333322 2278999999999875432 12221111111
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ ....+++++||++|+| +++|+++|.+
T Consensus 142 --------------------~-~~~~~~~~vSA~~g~g---i~~L~~~i~~ 168 (179)
T d1egaa1 142 --------------------Q-MNFLDIVPISAETGLN---VDTIAAIVRK 168 (179)
T ss_dssp --------------------T-SCCSEEEECCTTTTTT---HHHHHHHHHT
T ss_pred --------------------h-cCCCCEEEEeCcCCCC---HHHHHHHHHH
Confidence 0 1125778999999999 9999999975
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.7e-18 Score=125.78 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=85.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeEEEEe-cCceEEEEECCCc------hhhh-hhhHHHh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVGNFTY-EKKNIKIVDLPGE------DRLR-NKFFDQY 76 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~-~~~~~~i~D~~G~------~~~~-~~~~~~~ 76 (211)
....++|+++|.+|||||||+|+|++.+..... +++......... .+......+.++. .... .......
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 92 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence 345789999999999999999999987653222 232222232222 2222222222221 1111 0011111
Q ss_pred ---hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcc
Q psy1914 77 ---KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 77 ---~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 153 (211)
....+.++.+.|+..... .....++..... ...++++++||+|+..........+.+.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~------ 158 (188)
T d1puia_ 93 LEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVD------SNIAVLVLLTKADKLASGARKAQLNMVREAVLA------ 158 (188)
T ss_dssp HHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHH------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG------
T ss_pred hhhhhheeEEEEeecccccch--hHHHHHHHHhhh------ccccccchhhhhhccCHHHHHHHHHHHHHHHHh------
Confidence 223445555556654322 223333333332 127899999999997654444444444333321
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++.+||++|.| |++|+++|.+
T Consensus 159 ---------------------------~~~~~~~i~vSA~~g~G---id~L~~~i~~ 185 (188)
T d1puia_ 159 ---------------------------FNGDVQVETFSSLKKQG---VDKLRQKLDT 185 (188)
T ss_dssp ---------------------------GCSCEEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------------hCCCCcEEEEeCCCCCC---HHHHHHHHHH
Confidence 12237889999999999 9999998875
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=4.8e-18 Score=128.38 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=84.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc--Cccc--------------------------------ccccccceeeEEEEe
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVY--SKYF--------------------------------ESCTSLKENVGNFTY 52 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~ 52 (211)
+.+++++|+++|..++|||||+.+|+. +... +...|+......+.+
T Consensus 2 ~~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~ 81 (239)
T d1f60a3 2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 81 (239)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc
Confidence 456679999999999999999999962 1000 011355556677888
Q ss_pred cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hh---HHHHHHHHHHHHcCcCcCCCCC-cEEEEEeCC
Q psy1914 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KT---LRDVAESLYVILADPQVQSSRV-NILVCCNKQ 126 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~ 126 (211)
++.+++++|||||..|..+ .......+|++|+|+|+.+.. .. ..++.+.+...... ++ ++++++||+
T Consensus 82 ~~~~i~iiDtPGH~df~~~-~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~------gv~~iiv~iNKm 154 (239)
T d1f60a3 82 PKYQVTVIDAPGHRDFIKN-MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNKM 154 (239)
T ss_dssp SSEEEEEEECCCCTTHHHH-HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEECG
T ss_pred CCEEEEEEECCCcHHHHHH-HHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc------CCCeEEEEEECC
Confidence 8899999999999999986 455667799999999997631 00 12445544443321 14 478899999
Q ss_pred CccCCC
Q psy1914 127 DQTLAK 132 (211)
Q Consensus 127 Dl~~~~ 132 (211)
|+.+..
T Consensus 155 D~~~~d 160 (239)
T d1f60a3 155 DSVKWD 160 (239)
T ss_dssp GGGTTC
T ss_pred CCCCCC
Confidence 998654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=3.6e-17 Score=125.40 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--cc-----------cc--------cccccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS--KY-----------FE--------SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~--~~-----------~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|+.++|||||+.+++.. .. .. ...|+......+++++..++++||||+..|..+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e 87 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE 87 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence 6999999999999999999731 10 00 113555566778999999999999999999885
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
....++.+|+.|+|+|+.+.-. .++...|..... .++|.++++||+|..... .....+.+++.+.
T Consensus 88 -~~~~l~~~D~avlVvda~~Gv~--~~T~~~w~~a~~------~~lP~i~fINKmDr~~ad-~~~~l~ei~~~l~ 152 (276)
T d2bv3a2 88 -VERSMRVLDGAIVVFDSSQGVE--PQSETVWRQAEK------YKVPRIAFANKMDKTGAD-LWLVIRTMQERLG 152 (276)
T ss_dssp -HHHHHHHCCEEEEEEETTTSSC--HHHHHHHHHHHT------TTCCEEEEEECTTSTTCC-HHHHHHHHHHTTC
T ss_pred -HHHHHHhhhheEEeccccCCcc--hhHHHHHHHHHH------cCCCEEEEEecccccccc-cchhHHHHHHHhC
Confidence 6667788999999999988554 556666666553 239999999999997654 4445555655443
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.72 E-value=1.4e-16 Score=121.84 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=89.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--c-----------cc--------cccccceeeEEEEecCceEEEEECCCchhhhhh
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYSK--Y-----------FE--------SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~--~-----------~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (211)
+|+++|+.++|||||+.+|+... . .. ...|+......+.+++..++++|||||..|..+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 59999999999999999996311 0 00 113555566778999999999999999999985
Q ss_pred hHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy1914 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
....++.+|++++|+|+.+... .++.+.|....+. ++|.++++||+|.. . ........+.+.+
T Consensus 84 -~~~al~~~D~avlvvda~~Gv~--~~t~~~~~~~~~~------~~p~~i~iNk~D~~-~-~~~~~l~~~~~~l 146 (267)
T d2dy1a2 84 -IRGALEAADAALVAVSAEAGVQ--VGTERAWTVAERL------GLPRMVVVTKLDKG-G-DYYALLEDLRSTL 146 (267)
T ss_dssp -HHHHHHHCSEEEEEEETTTCSC--HHHHHHHHHHHHT------TCCEEEEEECGGGC-C-CHHHHHHHHHHHH
T ss_pred -hhhhhcccCceEEEeeccCCcc--chhHHHHHhhhhc------cccccccccccccc-c-cchhhhhhHHHHh
Confidence 5667788999999999987543 5566666665542 38999999999973 3 3333444444444
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=2.1e-14 Score=115.99 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=66.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-------cccccceeeEEEEecC-ceEEEEECCCchhhhhh----hHHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFE-------SCTSLKENVGNFTYEK-KNIKIVDLPGEDRLRNK----FFDQ 75 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~-------~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~----~~~~ 75 (211)
....++|+++|.+|||||||+|+|++..... ..+|+. ....+...+ ..+.+|||||....... +...
T Consensus 53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~-~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~ 131 (400)
T d1tq4a_ 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM 131 (400)
T ss_dssp HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCce-eeeeeeccCCCeEEEEeCCCcccccccHHHHHHHh
Confidence 3457899999999999999999999744211 112222 222333333 37999999997543221 1111
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy1914 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
.+..+|.+|++.|..-... ...+...+.. .++|+++|.||+|..
T Consensus 132 ~~~~~d~~l~~~~~~~~~~-----d~~l~~~l~~-----~~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 132 KFYEYDFFIIISATRFKKN-----DIDIAKAISM-----MKKEFYFVRTKVDSD 175 (400)
T ss_dssp TGGGCSEEEEEESSCCCHH-----HHHHHHHHHH-----TTCEEEEEECCHHHH
T ss_pred hhhcceEEEEecCCCCCHH-----HHHHHHHHHH-----cCCCEEEEEeCcccc
Confidence 2456888888877532211 1122222221 238999999999963
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=9.8e-15 Score=114.98 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=87.4
Q ss_pred CCCCE-EEEEcCCCCCHHHHHHHHHcC--ccc----------c-------cccccceeeEEEEec---------------
Q psy1914 9 SSQKV-VLLSGLSLSGKTLLFARLVYS--KYF----------E-------SCTSLKENVGNFTYE--------------- 53 (211)
Q Consensus 9 ~~~~k-i~i~G~~~~GKSsli~~l~~~--~~~----------~-------~~~t~~~~~~~~~~~--------------- 53 (211)
..++| |+++|+.++|||||+.+|+.. ... . ...|+......+.++
T Consensus 14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~ 93 (341)
T d1n0ua2 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 93 (341)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence 34565 999999999999999999721 110 0 001222222333221
Q ss_pred -CceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC-
Q psy1914 54 -KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA- 131 (211)
Q Consensus 54 -~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~- 131 (211)
+..++++|||||..|..+ ....++-+|++++|+|+.+... .++...|...... ++|+++++||+|+...
T Consensus 94 ~~~~inliDtPGh~dF~~e-v~~al~~~D~allVVda~eGv~--~qT~~~~~~a~~~------~~p~i~viNKiDr~~~e 164 (341)
T d1n0ua2 94 NSFLINLIDSPGHVDFSSE-VTAALRVTDGALVVVDTIEGVC--VQTETVLRQALGE------RIKPVVVINKVDRALLE 164 (341)
T ss_dssp SEEEEEEECCCCCCSSCHH-HHHHHHTCSEEEEEEETTTBSC--HHHHHHHHHHHHT------TCEEEEEEECHHHHHHT
T ss_pred cceEEEEEcCCCcHHHHHH-HHHHHhhcCceEEEEecccCcc--hhHHHHHHHHHHc------CCCeEEEEECccccccc
Confidence 126999999999999985 6667788999999999988543 5566666665542 3899999999998643
Q ss_pred --CCHHHHHHHHHHHHHH
Q psy1914 132 --KSSSVVKTLLQKELNL 147 (211)
Q Consensus 132 --~~~~~~~~~l~~~~~~ 147 (211)
....+..+.+...+..
T Consensus 165 l~~~~~~~~~~l~~~i~~ 182 (341)
T d1n0ua2 165 LQVSKEDLYQTFARTVES 182 (341)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHcCcccc
Confidence 3455555555554443
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.55 E-value=2.8e-15 Score=113.05 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=69.4
Q ss_pred eEEEEECCCchhhhhh--hHHHhh--hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy1914 56 NIKIVDLPGEDRLRNK--FFDQYK--SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~--~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
.+.++|+||+..+... ...... ...+.+++++|+.............+........ ...|.++|+||+|+...
T Consensus 96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~~ 172 (244)
T d1yrba1 96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLSE 172 (244)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCCH
T ss_pred ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeeccccccH
Confidence 6899999999765331 111112 2367899999986432211111111111110000 12899999999999876
Q ss_pred CCHHHHHHHHHHHHHHHh-hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy1914 132 KSSSVVKTLLQKELNLVR-RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
............ ++... .................. ...+....++++++||++|+| +++|+++|.+
T Consensus 173 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~v~vSa~~geG---i~~L~~~l~e 239 (244)
T d1yrba1 173 EEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCS---------MMTEVLPPVRVLYLSAKTREG---FEDLETLAYE 239 (244)
T ss_dssp HHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHH---------HHHHHSCCCCCEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHH---------HHHhhCCCCcEEEEECCCCCC---HHHHHHHHHH
Confidence 544433322211 11100 000000000000000000 001123447889999999999 9999999976
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.52 E-value=1.3e-13 Score=104.96 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=79.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEEEecCceEEEEECCCchh-------hhhhhHHH
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNFTYEKKNIKIVDLPGEDR-------LRNKFFDQ 75 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~ 75 (211)
.....++|+++|.+|||||||+|.+++.+..... .|..........++..+.++||||... ... ....
T Consensus 28 ~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~-~i~~ 106 (257)
T d1h65a_ 28 EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALN-IIKS 106 (257)
T ss_dssp TTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHH-HHHH
T ss_pred cCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHH-HHHH
Confidence 3456799999999999999999999987643211 234445566778888999999999732 111 1111
Q ss_pred h--hhcCCEEEEEEeCCCc--hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 76 Y--KSSAKGIVYVLDSSTV--QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 76 ~--~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
+ ....+++++|++++.. ...-......+...+... + -.++++|+||+|.....
T Consensus 107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~-~---~~~~ivv~t~~D~~~~~ 163 (257)
T d1h65a_ 107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-I---WNKAIVALTHAQFSPPD 163 (257)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-G---GGGEEEEEECCSCCCGG
T ss_pred HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh-h---hhCEEEEEECcccCCcC
Confidence 2 2346889999887652 222333444455544321 1 14799999999997543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1e-13 Score=108.70 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=87.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC------cc--cccccccceeeE-----------------E----E----Ee--
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYS------KY--FESCTSLKENVG-----------------N----F----TY-- 52 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~------~~--~~~~~t~~~~~~-----------------~----~----~~-- 52 (211)
..+.++|+|.|+||||||||+++|... +. ...-|+....-+ . . ..
T Consensus 51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg 130 (327)
T d2p67a1 51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 130 (327)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence 456889999999999999999999741 11 011121111100 0 0 00
Q ss_pred --------------cCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc
Q psy1914 53 --------------EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN 118 (211)
Q Consensus 53 --------------~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 118 (211)
-+..+.+++|.|...-.. .....+|.+++|.+....+. .+.....+.+ ++
T Consensus 131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~----~i~~~aD~~l~v~~P~~Gd~-iq~~k~gi~e-----------~a 194 (327)
T d2p67a1 131 ASQRARELMLLCEAAGYDVVIVETVGVGQSET----EVARMVDCFISLQIAGGGDD-LQGIKKGLME-----------VA 194 (327)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----HHHTTCSEEEEEECC-------CCCCHHHHH-----------HC
T ss_pred chhhhhHHHHHHHhcCCCeEEEeeccccccch----hhhhccceEEEEecCCCchh-hhhhchhhhc-----------cc
Confidence 012566777777543322 13356899999987654322 2222222222 34
Q ss_pred EEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCc
Q psy1914 119 ILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASE 198 (211)
Q Consensus 119 ~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~ 198 (211)
=++|+||+|+............+...+..... ..-.|..+++.|||++|+|
T Consensus 195 Di~VvNKaD~~~~~~~~~~~~~~~~al~~~~~----------------------------~~~~w~p~V~~~SA~~g~G- 245 (327)
T d2p67a1 195 DLIVINKDDGDNHTNVAIARHMYESALHILRR----------------------------KYDEWQPRVLTCSALEKRG- 245 (327)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCC----------------------------SBTTBCCEEEECBGGGTBS-
T ss_pred cEEEEEeecccchHHHHHHHHHHHHHhhhccc----------------------------CCCCCcceeEEEEeeCCCC-
Confidence 47889999997654443333333332221000 0114567899999999999
Q ss_pred cchHHHHHHHhh
Q psy1914 199 YDVEQLQDWMVT 210 (211)
Q Consensus 199 ~~i~~l~~~i~~ 210 (211)
+++|++.|.+
T Consensus 246 --i~eL~~~I~~ 255 (327)
T d2p67a1 246 --IDEIWHAIID 255 (327)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 9999999865
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.34 E-value=4e-12 Score=99.48 Aligned_cols=156 Identities=11% Similarity=0.088 Sum_probs=88.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc--------cccccccc-----------------eeeEEE-E----------
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY--------FESCTSLK-----------------ENVGNF-T---------- 51 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~--------~~~~~t~~-----------------~~~~~~-~---------- 51 (211)
..+-++|.|.|+||||||||+++|..... ...-|+.. .....+ .
T Consensus 48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg 127 (323)
T d2qm8a1 48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 127 (323)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccc
Confidence 45678999999999999999999984210 00001100 000111 0
Q ss_pred -------------ecCceEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc
Q psy1914 52 -------------YEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN 118 (211)
Q Consensus 52 -------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 118 (211)
.-+..+.++.|.|...-.. .....+|..++|......+. ++.... .+.. ++
T Consensus 128 ~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~----~~~~~~D~~v~v~~p~~GD~-iQ~~k~---------gilE--~a 191 (323)
T d2qm8a1 128 VAAKTRETMLLCEAAGFDVILVETVGVGQSET----AVADLTDFFLVLMLPGAGDE-LQGIKK---------GIFE--LA 191 (323)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH----HHHTTSSEEEEEECSCC-------CCT---------THHH--HC
T ss_pred hhHHHHHHHHhhccCCCCeEEEeehhhhhhhh----hhhcccceEEEEeeccchhh-hhhhhh---------hHhh--hh
Confidence 1123678888888754332 12345899999998866443 211111 1111 45
Q ss_pred EEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCC
Q psy1914 119 ILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSAS 197 (211)
Q Consensus 119 ~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g 197 (211)
=++|+||+|+.+...... ....+...+. .. ....-.|..+++.|||++|+|
T Consensus 192 Di~vvNKaD~~~~~~~~~~~~~~~~~~l~----~~------------------------~~~~~~~~p~V~~~Sa~~g~G 243 (323)
T d2qm8a1 192 DMIAVNKADDGDGERRASAAASEYRAALH----IL------------------------TPPSATWTPPVVTISGLHGKG 243 (323)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHT----TB------------------------CCSBTTBCCCEEEEBTTTTBS
T ss_pred heeeEeccccccchHHHHHHHHHHHHHhh----cc------------------------cccccCCCCceEEEEecCCCC
Confidence 589999999876543221 1111221111 00 001124567899999999999
Q ss_pred ccchHHHHHHHhh
Q psy1914 198 EYDVEQLQDWMVT 210 (211)
Q Consensus 198 ~~~i~~l~~~i~~ 210 (211)
+++++++|.+
T Consensus 244 ---i~el~~~I~~ 253 (323)
T d2qm8a1 244 ---LDSLWSRIED 253 (323)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 9999999865
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.16 E-value=5.6e-11 Score=91.99 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=62.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecCc-----------------eEEEEECCCc
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEKK-----------------NIKIVDLPGE 65 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~-----------------~~~i~D~~G~ 65 (211)
+....+||+++|.||||||||+|++++... ...|| |+.++.+.+.+.+. .+.+.|.||.
T Consensus 6 ~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGL 85 (296)
T d1ni3a1 6 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 85 (296)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccc
Confidence 345789999999999999999999997653 56665 66778888776542 6889999986
Q ss_pred hh-------hhhhhHHHhhhcCCEEEEEEeCCC
Q psy1914 66 DR-------LRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 66 ~~-------~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
.. ...+++. .++.+|++++|+|+.+
T Consensus 86 v~gA~~g~GLGn~fL~-~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 86 TKGASTGVGLGNAFLS-HVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCCCSSSSSCHHHHH-HHTTCSEEEEEEECCC
T ss_pred ccccccccccHHHHHH-HhhccceeEEEEeccC
Confidence 21 1122333 3577999999999854
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.15 E-value=1.4e-10 Score=88.88 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=56.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCc-----------------eEEEEECCCchh---
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKK-----------------NIKIVDLPGEDR--- 67 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~-----------------~~~i~D~~G~~~--- 67 (211)
.+||+++|.||||||||+|++++.+. ...| .|+.++.+.+.+.+. .+.++|+||.-.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 47999999999999999999998765 4555 466778888876542 588999999622
Q ss_pred ----hhhhhHHHhhhcCCEEEEEEeCC
Q psy1914 68 ----LRNKFFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 68 ----~~~~~~~~~~~~~d~ii~v~d~~ 90 (211)
...++.. .++.+|++++|+|+.
T Consensus 82 ~g~Glg~~FL~-~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLA-NIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHH-HHHTCSEEEEEEECS
T ss_pred cCCCccHHHHH-HHHhccceEEEeecc
Confidence 1222333 356799999999874
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.10 E-value=1e-10 Score=91.43 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=44.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEE------------------------ecCceEEEEECCC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFT------------------------YEKKNIKIVDLPG 64 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~------------------------~~~~~~~i~D~~G 64 (211)
++|+++|.||||||||+|+|++.+. ...|| |+.++.+... .....+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 5899999999999999999998664 45555 4455555421 0112599999999
Q ss_pred chhhhh---hhHHH---hhhcCCEEEEEEeCCC
Q psy1914 65 EDRLRN---KFFDQ---YKSSAKGIVYVLDSST 91 (211)
Q Consensus 65 ~~~~~~---~~~~~---~~~~~d~ii~v~d~~~ 91 (211)
.-...+ .+... .++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 743211 01111 2467999999999863
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=1.2e-09 Score=84.29 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYSKY 36 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~ 36 (211)
.-++|+|+|..++|||||+|+|++..+
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~ 51 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCc
Confidence 356899999999999999999998775
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.05 E-value=1.3e-09 Score=84.50 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=42.4
Q ss_pred eEEEEECCCchhh------------hhhhHHHhhhcCCEEEEEE-eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEE
Q psy1914 56 NIKIVDLPGEDRL------------RNKFFDQYKSSAKGIVYVL-DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122 (211)
Q Consensus 56 ~~~i~D~~G~~~~------------~~~~~~~~~~~~d~ii~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 122 (211)
.+.++||||.... ...+...|+.+++.+++++ ++..... -.....+...+. + ....+++|
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~-~~~~~~~~~~~~--~----~~~r~i~V 204 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-NSDALQLAKEVD--P----EGKRTIGV 204 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST-TCSHHHHHHHHC--S----SCSSEEEE
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc-ccHHHHHHHHhC--c----CCCeEEEE
Confidence 7889999997321 1125666888899876665 4433221 122333333331 1 12579999
Q ss_pred EeCCCccCCCC
Q psy1914 123 CNKQDQTLAKS 133 (211)
Q Consensus 123 ~nK~Dl~~~~~ 133 (211)
+||+|......
T Consensus 205 itk~D~~~~~~ 215 (306)
T d1jwyb_ 205 ITKLDLMDKGT 215 (306)
T ss_dssp EECTTSSCSSC
T ss_pred Eeccccccchh
Confidence 99999975543
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=3.8e-09 Score=80.55 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=37.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccce--eeEEEEecCceEEEEECCCc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKE--NVGNFTYEKKNIKIVDLPGE 65 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~ 65 (211)
...++|+++|.||||||||+|+|.+.+...+.++.|. ....+. .+..+.++||||.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~-~~~~~~l~DTPGi 167 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK-VGKELELLDTPGI 167 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE-ETTTEEEEECCCC
T ss_pred CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEE-CCCCeEEecCCCc
Confidence 4678999999999999999999999776444433332 222232 3458999999997
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=1.6e-07 Score=68.78 Aligned_cols=86 Identities=12% Similarity=0.176 Sum_probs=58.0
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
.+.|.+++|+.+.+|.-+...+.+++..... .++|.+||+||+||.+............ ...
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~------~~i~pvIvlnK~DL~~~~~~~~~~~~~~-~~~----------- 70 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEK------NELETVMVINKMDLYDEDDLRKVRELEE-IYS----------- 70 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHH------TTCEEEEEECCGGGCCHHHHHHHHHHHH-HHT-----------
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------cCCCEEEEEeCcccCCHHHHHHHHHhhc-ccc-----------
Confidence 4689999999887766556666666655543 2389999999999975432222221111 111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
.-.+++.+||++|+| +++|.+++.
T Consensus 71 -------------------------~~~~v~~vSa~~~~g---~~~L~~~l~ 94 (225)
T d1u0la2 71 -------------------------GLYPIVKTSAKTGMG---IEELKEYLK 94 (225)
T ss_dssp -------------------------TTSCEEECCTTTCTT---HHHHHHHHS
T ss_pred -------------------------cceeEEEeccccchh---HhhHHHHhc
Confidence 114668899999999 999999874
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.40 E-value=1.4e-07 Score=69.17 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---------cccceeeEEEEecCceEEEEECCCchhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---------TSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---------~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.-..+++|++|||||||+|+|..+....+. ..++....-+.+.+ .-.++||||...+
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~-gg~iiDTPG~r~~ 160 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF-GGYVVDTPGFANL 160 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT-SCEEESSCSSTTC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC-CcEEEeCCccccc
Confidence 457899999999999999999875432211 12222333345543 3578999998654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.39 E-value=1.1e-07 Score=69.98 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=59.7
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy1914 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
.+.|.+++|+.+.+|.-+...+.+++..... .+++.+||+||+||.+..+.......+.+.+..
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~------~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~---------- 72 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN---------- 72 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH----------
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHH------cCCCEEEEEecccccccHHHHHHHHHHHHHHhh----------
Confidence 4689999999988776556667776665543 238999999999998654433322222222221
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy1914 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
..++++.+||++++| +++|.++|.
T Consensus 73 -------------------------~g~~v~~~Sa~~~~g---l~~L~~~l~ 96 (231)
T d1t9ha2 73 -------------------------IGYDVYLTSSKDQDS---LADIIPHFQ 96 (231)
T ss_dssp -------------------------HTCCEEECCHHHHTT---CTTTGGGGT
T ss_pred -------------------------ccccceeeecCChhH---HHHHHHhhc
Confidence 115678899999999 888888764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.27 E-value=3.2e-06 Score=61.34 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+..-|+++|++||||||.+-+|..
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555789999999999998888763
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.27 E-value=7.7e-06 Score=59.05 Aligned_cols=68 Identities=22% Similarity=0.198 Sum_probs=41.2
Q ss_pred CceEEEEECCCchhhhhhh---HHHhh--------hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEE
Q psy1914 54 KKNIKIVDLPGEDRLRNKF---FDQYK--------SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~---~~~~~--------~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 122 (211)
+..+.++||+|......+. +..+. ...+-+++|+|++.......++...+..+ -+--++
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~~~~lI 157 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV----------GLTGVI 157 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH----------CCSEEE
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc----------CCceEE
Confidence 3478999999963322211 11111 13577899999987665566666554443 123567
Q ss_pred EeCCCccCC
Q psy1914 123 CNKQDQTLA 131 (211)
Q Consensus 123 ~nK~Dl~~~ 131 (211)
+||.|-...
T Consensus 158 ~TKlDet~~ 166 (207)
T d1okkd2 158 VTKLDGTAK 166 (207)
T ss_dssp EECTTSSCC
T ss_pred EeccCCCCC
Confidence 899997544
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=1.6e-07 Score=68.97 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---------cccceeeEEEEecCceEEEEECCCchhhh
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---------TSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
+-..+++|++|||||||+|+|.......+. ..++....-+..++ -.++||||...+.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG--GLVADTPGFSSLE 162 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT--EEEESSCSCSSCC
T ss_pred cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC--CEEEECCcccccc
Confidence 456789999999999999999975421111 11111222234443 3588999986654
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.19 E-value=8.5e-07 Score=67.15 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=35.8
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy1914 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
....++.+|+|++|+|+.+|.++.. ..+..+++ + +|+++|+||+||.+..
T Consensus 9 i~~~i~~~DvIl~V~DaR~P~ss~~---~~l~~~~~-----~--Kp~IlVlNK~DLv~~~ 58 (273)
T d1puja_ 9 VTEKLKLIDIVYELVDARIPMSSRN---PMIEDILK-----N--KPRIMLLNKADKADAA 58 (273)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSC---HHHHHHCS-----S--SCEEEEEECGGGSCHH
T ss_pred HHHHHHhCCEEEEEEECCCCCCCCC---HHHHHHHc-----C--CCeEEEEECccCCchH
Confidence 3446788999999999988765332 23344432 2 7999999999998553
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.14 E-value=9.1e-06 Score=58.69 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=39.0
Q ss_pred CceEEEEECCCchhhhhhh---HHHh--hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 54 KKNIKIVDLPGEDRLRNKF---FDQY--KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~---~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+..+.++||+|........ +..+ ...++-+++|+|++.....+..+..+...+ -+-=+++||.|-
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----------~~~~~I~TKlDe 161 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----------GVTGLVLTKLDG 161 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----------CCCEEEEECGGG
T ss_pred cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----------CCCeeEEeecCc
Confidence 3478999999963221111 1112 234788999999987665454444332222 122467899996
Q ss_pred cC
Q psy1914 129 TL 130 (211)
Q Consensus 129 ~~ 130 (211)
..
T Consensus 162 ~~ 163 (207)
T d1ls1a2 162 DA 163 (207)
T ss_dssp CS
T ss_pred cc
Confidence 43
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=4.4e-06 Score=61.17 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-.++.|.-|||||||+++++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 4688999999999999999864
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.08 E-value=3.1e-05 Score=55.93 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=16.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...-|+++|++||||||.+-+|..
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445578899999999999888863
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=1.8e-05 Score=57.13 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-|+++|++||||||.+-+|..
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34577899999999999988873
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.82 E-value=4.9e-06 Score=58.20 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+||+++|++|+|||||++.+++
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.63 E-value=1.9e-05 Score=54.74 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=23.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+.++|+++|++||||||+.+.|..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 35678999999999999999999975
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00011 Score=55.35 Aligned_cols=83 Identities=18% Similarity=0.089 Sum_probs=50.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc------cccccceeeEEEEecC---ceEEEEECCCchh-------hhhh
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFE------SCTSLKENVGNFTYEK---KNIKIVDLPGEDR-------LRNK 71 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~------~~~t~~~~~~~~~~~~---~~~~i~D~~G~~~-------~~~~ 71 (211)
..+-.-|.++|+.++|||+|+|.|.+..+.- ...|.|.......+.. ..+.++||.|... +...
T Consensus 29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~ 108 (277)
T d1f5na2 29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 108 (277)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHH
Confidence 3344468899999999999999999866311 1246666554444432 2788999999732 1111
Q ss_pred hHHHhhhcCCEEEEEEeCC
Q psy1914 72 FFDQYKSSAKGIVYVLDSS 90 (211)
Q Consensus 72 ~~~~~~~~~d~ii~v~d~~ 90 (211)
+.....--++.+|+=....
T Consensus 109 i~~l~~llSs~~i~N~~~~ 127 (277)
T d1f5na2 109 IFALAVLLSSTFVYNSIGT 127 (277)
T ss_dssp HHHHHHHHCSEEEEEEESC
T ss_pred HHHHHHHHhCEEEEecccc
Confidence 2222222367776665543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.59 E-value=1.4e-05 Score=55.86 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-+|+|+|++|||||||+++|..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999985
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.56 E-value=1.8e-05 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-++|+++|++||||||+.++|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.48 E-value=3.7e-05 Score=54.35 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+||+++|++||||||+...|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999985
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=2.7e-05 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+-++|+|++|||||||+++|..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999985
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.41 E-value=5.4e-05 Score=53.67 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=23.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+.+||+++|+|||||||+...|..
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999986
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.37 E-value=5e-05 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..++|+++|++||||||+...|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.35 E-value=5.4e-05 Score=51.25 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
|++.|++||||||++++|..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.35 E-value=5.9e-05 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+||+++|+|||||||+...|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.00017 Score=53.91 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccccccc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSL 43 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~ 43 (211)
+.+-+++++|++|+|||+++..|...-.....|..
T Consensus 37 ~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~ 71 (268)
T d1r6bx2 37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 71 (268)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG
T ss_pred CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccc
Confidence 44568999999999999999998864443343433
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.29 E-value=7.9e-05 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+..+|..
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999985
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.29 E-value=7.5e-05 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++||||||+...|..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.27 E-value=8.4e-05 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++||||||+...|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=9.1e-05 Score=51.74 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+||+++|++||||||...+|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999874
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.23 E-value=8.4e-05 Score=51.08 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|++.|++||||||+.++|..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999985
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.20 E-value=0.00023 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+|+|.|++||||||++++|+.
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~ 188 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIME 188 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCCEEEEeeccccchHHHHHHhh
Confidence 35699999999999999999986
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.20 E-value=0.00011 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+||+++|++||||||+...|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999985
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.18 E-value=0.00013 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+..-|.++|.+||||||+...|..
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45667889999999999999988874
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.18 E-value=9.7e-05 Score=50.92 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
+.|+|.+|||||||+++|..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999975
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.13 E-value=0.00012 Score=52.22 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+++|.|||||||+.++|..
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.00012 Score=49.68 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.00012 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.196 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++=+++++|++|||||||++.+.+-
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999999873
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.10 E-value=0.00012 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++||||||+.+.|..
T Consensus 2 p~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.00015 Score=50.24 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|+++|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999984
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.00017 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++||||||...+|..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999975
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.03 E-value=0.00016 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.=+++++|++|||||||++.+++
T Consensus 41 Ge~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 41 GKTVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 44799999999999999999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.02 E-value=0.00017 Score=53.15 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.=.++++|++|||||||++.+.+
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 344789999999999999999986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.01 E-value=0.00017 Score=50.76 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|+++||+|||||||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999763
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00019 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 26 Gei~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 26 GEFVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 346899999999999999999863
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.00 E-value=0.00016 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCcchhhHhccCC
Confidence 346899999999999999988763
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.00 E-value=0.00017 Score=51.55 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+++-
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 27 GNVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcc
Confidence 335789999999999999999863
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.99 E-value=0.00024 Score=49.83 Aligned_cols=26 Identities=38% Similarity=0.425 Sum_probs=21.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...++-|+|.|++|||||||.++|..
T Consensus 19 ~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34556788999999999999999974
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=96.98 E-value=0.00052 Score=50.27 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.=.++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3468999999999999999998643
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.98 E-value=0.0002 Score=49.69 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+|.|++||||||++++|..
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.98 E-value=0.00019 Score=50.22 Aligned_cols=22 Identities=41% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=|+++||+|||||||++.|...
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999854
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.94 E-value=0.00023 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|++|||||||++.+++-
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3457999999999999999999863
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.94 E-value=0.00023 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-++++|++|||||||++.+.+-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999999873
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.93 E-value=0.00025 Score=48.77 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|++.|++||||||+.+.|...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 778999999999999999753
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.92 E-value=0.00024 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 32 Ge~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 32 GEFLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 346899999999999999999874
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00026 Score=49.58 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|+++||+|||||||+++|+..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999853
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00025 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-++++|++||||||+.+.|..
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3467799999999999999975
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.00029 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|++|||||||++.+.+-
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Confidence 3458999999999999999999863
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.88 E-value=0.00038 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...=|+++|++||||||+..++..
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 455788999999999999999864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00025 Score=51.96 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=-++++|++|||||||++.+.+-
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 31 GQIYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp SCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 346899999999999999999863
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.85 E-value=0.00029 Score=48.37 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
=|++.|++||||||+.+.|..
T Consensus 5 iI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366679999999999999986
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.00017 Score=50.69 Aligned_cols=24 Identities=38% Similarity=0.304 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|.++|++||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999974
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.00046 Score=48.83 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccccc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCT 41 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~ 41 (211)
+.+-+++++|++|+|||+++..|...-.....|
T Consensus 41 ~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp 73 (195)
T d1jbka_ 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP 73 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSC
T ss_pred cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCC
Confidence 345689999999999999999988644333333
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.83 E-value=0.00032 Score=49.52 Aligned_cols=20 Identities=45% Similarity=0.589 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
|+++||+|||||||+++|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999975
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00033 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=|+++||+|||||||+++|+..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 34789999999999999999864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.82 E-value=0.00031 Score=48.16 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.80 E-value=0.00043 Score=48.83 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+...|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=96.79 E-value=0.00021 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=-++++|++|||||||++.+.+-
T Consensus 27 e~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999874
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.78 E-value=0.00088 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=20.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.+-+++++|++|||||+++..|...
T Consensus 41 ~~k~n~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCCeEECCCCCCHHHHHHHHHHH
Confidence 34456799999999999999777653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.76 E-value=0.00048 Score=50.47 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 31 Ge~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 31 GERFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 346899999999999999999874
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.75 E-value=0.00045 Score=50.34 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.||+|+||||+++.+.+
T Consensus 33 ~~~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 33 EPLEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp SCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999985
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.74 E-value=0.00041 Score=51.22 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|++.|+||+|||||..++.+
T Consensus 34 ~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999986
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.74 E-value=0.00043 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-|+++|+|||||||+..+|..
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.73 E-value=0.00036 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
=-++++|+.|||||||++.+.+-.
T Consensus 33 ei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357999999999999999998743
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.00028 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
=-++++|+.|||||||++.+.+
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4589999999999999999987
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.71 E-value=0.00053 Score=49.21 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.++|+|-||+||||||....|..
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999985
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.69 E-value=0.00043 Score=50.37 Aligned_cols=24 Identities=33% Similarity=0.239 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....+++.||||+||||+++.+..
T Consensus 34 ~~~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 34 VLDHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHh
Confidence 345799999999999999999985
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.00072 Score=48.29 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+-|+|.|++||||||+.++|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.68 E-value=0.00042 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.=-++++|+.|||||||++.+.+-.
T Consensus 28 Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 28 GEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998743
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.62 E-value=0.00033 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.=+++++|++|||||||++.+.+
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHh
Confidence 445899999999999999998875
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.61 E-value=0.00059 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|+++|++||||||+.+.|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.59 E-value=0.00051 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 28 GEi~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 28 GDVISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 446899999999999999999863
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.58 E-value=0.00057 Score=47.47 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=17.7
Q ss_pred EE-EEEcCCCCCHHHHHHHHHc
Q psy1914 13 VV-LLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki-~i~G~~~~GKSsli~~l~~ 33 (211)
|| +|.|.+||||||+++.|..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 55 4679999999999999963
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.56 E-value=0.00055 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-++++|+.|||||||++.+.+-
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 5799999999999999999874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.54 E-value=0.00052 Score=48.32 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++.+-|+|-|..||||||+++.|..
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35566899999999999999999875
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.52 E-value=0.00092 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....+++.||+|+||||++..+++
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999986
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.42 E-value=0.001 Score=47.62 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+..-|.+.|.+|||||||.+.|..
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999999874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.37 E-value=0.0011 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||++++.+..
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999885
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.29 E-value=0.0012 Score=48.54 Aligned_cols=23 Identities=43% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.||+|+|||++++.+.+
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHhh
Confidence 34699999999999999999985
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.29 E-value=0.00094 Score=50.79 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++++||||||||.|.+++..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhh
Confidence 445789999999999999999985
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.28 E-value=0.0013 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++-|++.|.+||||||+.+.|..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457789999999999999998865
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.23 E-value=0.0016 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+++.|++|+|||++++.+..
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999886
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.06 E-value=0.0016 Score=47.71 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-+++.|++|+|||||+.++..
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Confidence 34678999999999999999874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.98 E-value=0.0022 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..+++.||+|+||||++..++..
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999999863
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0019 Score=45.96 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+-|+|.||+||||||+...|..
T Consensus 4 piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4678889999999999999985
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.96 E-value=0.0026 Score=46.66 Aligned_cols=23 Identities=39% Similarity=0.265 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+++.|++|+|||++++++..
T Consensus 42 ~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHH
Confidence 34699999999999999999985
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.92 E-value=0.0024 Score=45.08 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998874
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.002 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
...+++.|++|+||||++..++..
T Consensus 33 ~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 33 LPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999998863
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.0029 Score=46.63 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+++.||+|+|||++++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 44699999999999999999985
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.0027 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+++.||+|+||||+++.+..
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHH
Confidence 4589999999999999998875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0026 Score=47.63 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.1
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHH
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
..++..+-|+|.|.+|||||||...+.
T Consensus 22 ~~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 22 TGNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp TTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCCCEEEEeECCCCCCHHHHHHHHH
Confidence 344566788999999999999988774
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.83 E-value=0.0015 Score=48.98 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=18.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++++-|+|.|.+||||||+.++|..
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHH
Confidence 5667899999999999999998753
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.0025 Score=46.97 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....+++.||+|+|||++++++..
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceeEEecCCCCCchHHHHHHHH
Confidence 344699999999999999999986
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.003 Score=47.84 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
.+..+-|+|.|++||||||+.+.|.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 4567889999999999999988875
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.0028 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy1914 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+++.|++|+||||++..++..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 5899999999999999999863
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.72 E-value=0.0031 Score=48.88 Aligned_cols=27 Identities=33% Similarity=0.293 Sum_probs=22.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...++.-+++.||||+|||++.+.+.+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence 344556799999999999999999985
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.70 E-value=0.0015 Score=48.14 Aligned_cols=20 Identities=30% Similarity=-0.049 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
+++.|++|+|||++++.+..
T Consensus 49 l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHH
Confidence 34569999999999999986
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.61 E-value=0.0028 Score=50.51 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-+|+++||+|||||-|.++|..
T Consensus 50 sNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999975
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0041 Score=44.07 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy1914 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
|+|-|..||||||+++.|..
T Consensus 5 IviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77889999999999998874
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.41 E-value=0.018 Score=38.99 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-c--cccccceeeEEEEecCceEEEEEC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-E--SCTSLKENVGNFTYEKKNIKIVDL 62 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~ 62 (211)
++..-|++-|+=|||||||++.++..--. . ..||... ...+...+..+.-+|.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~~~~~~i~H~Dl 86 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYNIAGKMIYHFDL 86 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEEETTEEEEEEEC
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE-EEeeccCCceEEEEEE
Confidence 44557889999999999999999864322 1 2244433 1223344445555564
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.34 E-value=0.0049 Score=45.55 Aligned_cols=24 Identities=38% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....|++.|++|+|||+|+++++.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~ 63 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIAN 63 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcchhHHHHHHH
Confidence 345699999999999999999986
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.0059 Score=46.33 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=21.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++...++++||+|||||.|...|..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCcchhHHHHHHHHh
Confidence 3344799999999999999999875
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.23 E-value=0.0052 Score=47.62 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=22.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+.-.++++||+|||||-|.++|..
T Consensus 65 ~~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 65 ELSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcceeeeCCCCccHHHHHHHHHh
Confidence 34566799999999999999999864
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.0073 Score=42.93 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.=|+|-|+.||||||++..|..
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4477779999999998888764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.0061 Score=42.71 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.--+.+.|++|+|||+|+..++..
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4456789999999999999998853
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.09 E-value=0.0054 Score=43.28 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=23.5
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 6 FRKSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...++--+++.||+++|||.++++++.
T Consensus 48 ~~~PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 48 KGTPKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp HTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cCCCCceEEEEECCCCccHHHHHHHHHH
Confidence 3456667899999999999999998874
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0072 Score=42.82 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+-|+++|..||||||..+.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 46889999999999999988643
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.0037 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|+|-|+.||||||+++.|..
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGG
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.05 E-value=0.0063 Score=43.04 Aligned_cols=22 Identities=32% Similarity=0.182 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+-|+++|..||||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.98 E-value=0.0078 Score=41.59 Aligned_cols=25 Identities=32% Similarity=0.178 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
..-|++.|++|+||||+.-.|....
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 3458999999999999999988644
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.91 E-value=0.0085 Score=41.42 Aligned_cols=25 Identities=32% Similarity=0.230 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
..-|++.|++|+|||++.-.|....
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3458999999999999999998644
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.0012 Score=46.03 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=16.4
Q ss_pred EEEcCCCCCHHHHHHHHH
Q psy1914 15 LLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 15 ~i~G~~~~GKSsli~~l~ 32 (211)
+|+|+.||||||++.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999986
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.67 E-value=0.0061 Score=45.56 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=16.4
Q ss_pred EEEcCCCCCHHHHHHHHH
Q psy1914 15 LLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 15 ~i~G~~~~GKSsli~~l~ 32 (211)
+++|+.|||||+++.++.
T Consensus 28 vlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEECCTTTCSTHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 678999999999999884
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0099 Score=42.79 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+|=|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578899999999999999985
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.61 E-value=0.0095 Score=42.47 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy1914 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
+.+.|++|+|||-|+++++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999863
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.57 E-value=0.009 Score=46.85 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+.-=|++.|++||||||.++.++..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhh
Confidence 34456899999999999999999863
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.53 E-value=0.012 Score=40.42 Aligned_cols=25 Identities=28% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
..-|++.|++|+||||+.-.+....
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 4568999999999999998888654
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.53 E-value=0.0092 Score=42.70 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.--+.+.|++|+|||+|+..+...
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4456889999999999999998753
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.41 E-value=0.012 Score=42.49 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++|.|++|+|||+|...++.
T Consensus 36 G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 36 QAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999999999875
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.015 Score=37.39 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=24.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 7 RKSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.++.+.|.+.|.+|+|||+|.++|..
T Consensus 2 r~kqgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 2 RPKQGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp GGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred CCccceEEEEeCCCCCCHHHHHHHHHH
Confidence 567889999999999999999999863
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.22 E-value=0.014 Score=41.52 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.=|+|-|..||||||+++.|..
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999998864
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.21 E-value=0.012 Score=45.85 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=16.4
Q ss_pred EEEcCCCCCHHHHHHHHH
Q psy1914 15 LLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 15 ~i~G~~~~GKSsli~~l~ 32 (211)
+|+|+.|||||+++.++.
T Consensus 29 ~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 29 SIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 578999999999999984
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.10 E-value=0.014 Score=43.26 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-|++.|..|+|||||+..+.+
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999875
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.07 E-value=0.018 Score=42.56 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=24.6
Q ss_pred eccccCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 4 FKFRKSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 4 ~~~~~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.++..++.-+.+.|++++|||+|++.+..
T Consensus 97 L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 97 ATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HcCCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence 334556677889999999999999999875
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.05 E-value=0.016 Score=41.63 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.--+++.|++|+|||+|+.++...
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4456789999999999999998854
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.05 E-value=0.0076 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.196 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|++|+|||+|++++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999863
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.84 E-value=0.018 Score=43.66 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+++.|+||+|||.|.+.+.+
T Consensus 125 ~~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 456689999999999999986
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=93.82 E-value=0.013 Score=44.73 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-++|+|=|+.||||||+++.|...
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999863
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=93.77 E-value=0.019 Score=43.78 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-++|.|=|+.||||||+++.|..
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHS
T ss_pred eEEEEEECCccCCHHHHHHHHHH
Confidence 36899999999999999999986
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.66 E-value=0.02 Score=40.86 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
--+++.|++|+|||+|...++..
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 34788999999999999999853
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.022 Score=40.23 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-+++.|++|+|||+++..+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 499999999999999998875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.023 Score=40.76 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.--++|.|++|+|||+|...++.
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344678999999999999999985
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.022 Score=41.05 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-+++.|++|+|||+++..+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998864
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.40 E-value=0.023 Score=42.90 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..++++|++|+|||.+.+.|..
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCcchHHHHHHHHHH
Confidence 3678889999999999998875
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.33 E-value=0.024 Score=40.69 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|..||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=93.32 E-value=0.019 Score=43.69 Aligned_cols=22 Identities=32% Similarity=0.172 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+|=|+-||||||+++.|..
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC
T ss_pred eEEEEECCcCCCHHHHHHHHHH
Confidence 5799999999999999999864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.93 E-value=0.031 Score=39.54 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=19.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
.+.--+.|.|++|+|||+|...++
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 345568899999999999987765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.81 E-value=0.032 Score=40.87 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
=+++.|++|+|||+|+..+..
T Consensus 37 l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 367899999999999888763
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.23 E-value=0.037 Score=43.26 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..++|+|.+|||||+++..++.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHH
Confidence 3589999999999999887764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.01 E-value=0.049 Score=40.46 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.=|++|+|++|+|||+|+..+..
T Consensus 43 GQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 43 GQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp TCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCeeeEeCCCCCCHHHHHHHHHH
Confidence 45899999999999999999886
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.94 E-value=0.029 Score=41.51 Aligned_cols=16 Identities=31% Similarity=0.206 Sum_probs=13.6
Q ss_pred EEEEEcCCCCCHHHHH
Q psy1914 13 VVLLSGLSLSGKTLLF 28 (211)
Q Consensus 13 ki~i~G~~~~GKSsli 28 (211)
-++|+|++|+|||+.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4789999999999753
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=91.90 E-value=0.036 Score=41.33 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=13.7
Q ss_pred EEEEEcCCCCCHHHHH
Q psy1914 13 VVLLSGLSLSGKTLLF 28 (211)
Q Consensus 13 ki~i~G~~~~GKSsli 28 (211)
.++|.|++||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4889999999999754
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=0.052 Score=39.55 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
--.++.|++|+|||+|+-.+..
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3467899999999999988763
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.94 E-value=0.44 Score=32.93 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCceEEEEECCCchhhhhhhHHHhhhc---CCEEEE
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSS---AKGIVY 85 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~---~d~ii~ 85 (211)
.....+++.|++|+|||++...+...- ....+..++...+.-++.. -|.+..+. +....... ...=++
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i--~~~~~~h~D~~~i~~~~~~------I~Id~IR~-i~~~~~~~~~~~~~Kvi 83 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPEYV--EKFPPKASDVLEIDPEGEN------IGIDDIRT-IKDFLNYSPELYTRKYV 83 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHHHH--HTSCCCTTTEEEECCSSSC------BCHHHHHH-HHHHHTSCCSSSSSEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH--hccccCCCCEEEEeCCcCC------CCHHHHHH-HHHHHhhCcccCCCEEE
Confidence 456789999999999999999888521 1111222222222212111 13344444 33322111 222355
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy1914 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
++|-.+.-+ .++..-+.+.+..+. .+.-++++.|..+.
T Consensus 84 IId~ad~l~--~~aqNaLLK~LEEPp---~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 84 IVHDCERMT--QQAANAFLKALEEPP---EYAVIVLNTRRWHY 121 (198)
T ss_dssp EETTGGGBC--HHHHHHTHHHHHSCC---TTEEEEEEESCGGG
T ss_pred EEeCccccc--hhhhhHHHHHHhCCC---CCceeeeccCChhh
Confidence 555444222 344555666666542 23667777766654
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.53 E-value=0.11 Score=39.88 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.5
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q psy1914 12 KVVLLSGLSLSGKTLLFARL 31 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l 31 (211)
.-.+|.|++|+|||+++..+
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHHH
Confidence 45788999999999987553
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.24 E-value=0.088 Score=38.65 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=20.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...--..+.|++++|||+|+-.++.
T Consensus 58 ~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 58 PRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp CSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred ccceeEEEecCCCcHHHHHHHHHHH
Confidence 3445578899999999999877764
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=88.77 E-value=0.15 Score=36.98 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy1914 13 VVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~ 32 (211)
+|+|.|..|+||||+.-.|.
T Consensus 3 ~Iai~gKGGvGKTT~a~nLA 22 (269)
T d1cp2a_ 3 QVAIYGKGGIGKSTTTQNLT 22 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68899999999999887664
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.98 E-value=0.18 Score=37.01 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.=|++++|.+++|||+|+..+..
T Consensus 68 GQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 68 GGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCHHHHHHHHHH
Confidence 34799999999999999998875
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.96 E-value=0.16 Score=37.01 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..--..+.|++++|||+|+-.++.
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEecCCCcHHHHHHHHHHH
Confidence 344578899999999999988875
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=87.85 E-value=0.18 Score=36.61 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=17.1
Q ss_pred CCCCEEEE-EcCCCCCHHHHHHHHH
Q psy1914 9 SSQKVVLL-SGLSLSGKTLLFARLV 32 (211)
Q Consensus 9 ~~~~ki~i-~G~~~~GKSsli~~l~ 32 (211)
++..||++ .|..|+||||+.-.|.
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHH
Confidence 44555555 4999999999765554
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.17 E-value=0.12 Score=38.53 Aligned_cols=15 Identities=47% Similarity=0.516 Sum_probs=13.2
Q ss_pred EEEEcCCCCCHHHHH
Q psy1914 14 VLLSGLSLSGKTLLF 28 (211)
Q Consensus 14 i~i~G~~~~GKSsli 28 (211)
-+++|.+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (313)
T d2olra1 17 AVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 478999999999965
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.14 E-value=0.2 Score=35.79 Aligned_cols=21 Identities=14% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-+++.|+..+|||++++.+.-
T Consensus 43 ~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 43 MLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeccCchhhHHHHHHHHH
Confidence 478999999999999999864
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.05 E-value=2.2 Score=29.38 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=42.4
Q ss_pred eEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE-EEEeCCCccCCC
Q psy1914 56 NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL-VCCNKQDQTLAK 132 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~ 132 (211)
.+.++|+|+..... ....+..+|.++++..... . ++..+.+.+..+.+ .++|++ +|.||.|.....
T Consensus 113 d~IiiD~~~~~~~~---~~~~l~~aD~viiv~~~~~-~-s~~~~~~~~~~~~~------~~~~~~giv~N~~~~~~~~ 179 (237)
T d1g3qa_ 113 DFILIDCPAGLQLD---AMSAMLSGEEALLVTNPEI-S-CLTDTMKVGIVLKK------AGLAILGFVLNRYGRSDRD 179 (237)
T ss_dssp SEEEEECCSSSSHH---HHHHHTTCSEEEEEECSCH-H-HHHHHHHHHHHHHH------TTCEEEEEEEEEETSCTTC
T ss_pred CEEEEccccccccc---chhhhhhhhcccccccccc-e-ecchhhHHHHHHhh------hhhhhhhhhhcccccccch
Confidence 78999999875433 2334566999999988743 2 25555555444332 226665 789999876443
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.48 E-value=0.14 Score=38.33 Aligned_cols=15 Identities=47% Similarity=0.516 Sum_probs=13.2
Q ss_pred EEEEcCCCCCHHHHH
Q psy1914 14 VLLSGLSLSGKTLLF 28 (211)
Q Consensus 14 i~i~G~~~~GKSsli 28 (211)
-+++|.+|+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEEccCCCCccccc
Confidence 588999999999964
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=86.45 E-value=0.23 Score=35.26 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy1914 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-+++.|+..+|||++++.+.-
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhHH
Confidence 378999999999999998874
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.27 E-value=0.22 Score=35.88 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=20.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+.-|++.|++|+||+.+...+-.
T Consensus 21 ~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 21 CAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHH
Confidence 3455689999999999999998853
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.97 E-value=0.16 Score=38.09 Aligned_cols=16 Identities=50% Similarity=0.553 Sum_probs=13.9
Q ss_pred EEEEEcCCCCCHHHHH
Q psy1914 13 VVLLSGLSLSGKTLLF 28 (211)
Q Consensus 13 ki~i~G~~~~GKSsli 28 (211)
.-+++|.+|+|||||-
T Consensus 16 ~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 16 VTVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEccCCCCcccce
Confidence 3468999999999987
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=85.66 E-value=0.22 Score=31.87 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=17.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy1914 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-..++.+++|+|||.++-.+..
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 3457799999999998866553
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=84.87 E-value=0.32 Score=33.51 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.6
Q ss_pred CEEEEEcCC-CCCHHHHHHHHH
Q psy1914 12 KVVLLSGLS-LSGKTLLFARLV 32 (211)
Q Consensus 12 ~ki~i~G~~-~~GKSsli~~l~ 32 (211)
.|+.|.|.. ||||||+.-.|.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 378999995 999999877765
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=83.57 E-value=0.39 Score=35.01 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=16.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy1914 13 VVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~ 32 (211)
+|++-|..|+||||+.-.|.
T Consensus 4 ~IaisgKGGVGKTT~a~NLA 23 (289)
T d2afhe1 4 QCAIYGKGGIGKSTTTQNLV 23 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57889999999999766554
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.64 E-value=0.31 Score=35.89 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=|+.++|.+|+|||+|+..+...
T Consensus 68 GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 68 GQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEeecCCCCChHHHHHHHHHh
Confidence 447899999999999998877653
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=82.45 E-value=0.42 Score=34.70 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=16.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHH
Q psy1914 12 KVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~ 32 (211)
.-|++.|..|+||||+.-.+.
T Consensus 9 ~~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 9 PYLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCcChHHHHHHHHH
Confidence 356789999999999666554
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=81.35 E-value=0.49 Score=34.44 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy1914 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--..+.|++++|||+|+..++.
T Consensus 57 g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEecCCccchHHHHHHHHH
Confidence 34567899999999999988875
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=80.60 E-value=0.51 Score=30.65 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=14.2
Q ss_pred EEEcCCCCCHHH-HHHHHH
Q psy1914 15 LLSGLSLSGKTL-LFARLV 32 (211)
Q Consensus 15 ~i~G~~~~GKSs-li~~l~ 32 (211)
+++||=.||||| |+.++-
T Consensus 6 ~i~GpMfsGKTteLi~~~~ 24 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLH 24 (139)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHHH
Confidence 568999999999 555553
|