Psyllid ID: psy2025

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MCGQCGHTFRLLLIGRQPLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHIRWKGHRLETVNGPLKVYMLHNAPIY
Secondary Structure (PSIPRED)
cccccccEEEEEEccccccccccccEEEEEEEEEEEEEEEccccccEEEEEcccccccEEEEccccccccccccccEEEEEEcccccccccccccEEEEEEEEccccEEEEEEEccccccccccEEEEcccccccccccccccccHHHHcccEEEcccEEEEEccEEEEEEcccEEEEEEccccccEEEEccEEEEEEcccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccHEEEEEEccccccccEEcccccEEEEEEEEEEEccccccEEEEEccccEEEEEEEcccccccHHHHcccEEEEEccccccEccEccEccEEcEEEcccccccEEEEEccccccccccEEEEcccccccHHHcccHHHHHHHHccccccccccEEEEccccEEEccccccEEEEccccccEEEEEcccEEccccccEEEEEcccccc
Coil and Loop (DISEMBL)
MCGQCGHTFRLLLIGRQPlgnalawhvedcdvdaqMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCnlkpakfrGILSQGMILCASETYNNVtrvevvrppenctagqrvfihnrtgipdkmlhpkemvWPKIQVdlksddnghirwkghRLETVNAQRAAVdlksddnghirwkghrletvngplkvymlhnapiy
Flexible Loop (DISEMBL)
MCGQCGHTFRLLLIGRQPLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVrppenctagqrvFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRaavdlksddnghirwkghrletvngplkvymlhnapiy
Low Complexity Region (SEG)
MCGQCGHTFRLLLIGRQPLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHIRWKGHRLETVNGPLKVYMLHNAPIY
Disordered region (IsUnstruct)
***QCGHTFRLLLIGRQPLGNALAWHVEDCDVDAQMHTIER***EAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHIRWKGHRLETVNGPLKVYMLH*****
Disordered Region (DISOPRED)
***********************AWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGI*****HPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHIRWKGHRLETVNGPLKVYMLHNAPIY
Disordered Region (DISEMBL)
MCGQCGHTFRLLLIGRQPLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHIRWKGHRLETVNGPLKVYMLHNAPIY
Disordered Region (DISPRO)
*CGQCGHTFRLLLIGRQPLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHIRWKGHRLETVNGPLKVYMLHNAPIY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCGQCGHTFRLLLIGRQPLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHIRWKGHRLETVNGPLKVYMLHNAPIY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
Q6TGS6	529	Tyrosine--tRNA ligase, cy	no	N/A	0.568	0.228	0.455	4e-22
Q7ZX51	528	Tyrosine--tRNA ligase, cy	N/A	N/A	0.563	0.227	0.434	2e-21
P31230	310	Aminoacyl tRNA synthase c	yes	N/A	0.544	0.374	0.408	4e-21
O54873	359	Aminoacyl tRNA synthase c	yes	N/A	0.544	0.323	0.408	4e-21
Q6DIJ1	528	Tyrosine--tRNA ligase, cy	yes	N/A	0.563	0.227	0.434	6e-21
Q12904	312	Aminoacyl tRNA synthase c	yes	N/A	0.549	0.375	0.396	8e-21
Q29465	528	Tyrosine--tRNA ligase, cy	no	N/A	0.638	0.257	0.397	2e-20
Q5ZJ08	527	Tyrosine--tRNA ligase, cy	no	N/A	0.638	0.258	0.375	2e-20
Q4KM49	528	Tyrosine--tRNA ligase, cy	no	N/A	0.535	0.215	0.432	3e-20
Q5R8T5	528	Tyrosine--tRNA ligase, cy	no	N/A	0.685	0.276	0.371	1e-19

>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2

 Score =  104 bits (260), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 74/123 (60%), Gaps = 2/123 (1%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +GE Q R +VSGL  Y+T  QL +  VV++CNLKP K RGI SQ M+LCAS      
Sbjct: 392 KIDVGEEQPRTVVSGLVAYITEEQLQDRLVVLLCNLKPQKMRGIESQAMVLCAS-IEGEP 450

Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
            +VE + PPE   AG RV++    +G PD  L PK+ V+ K+QVDLK       +WK   
Sbjct: 451 RKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEKLQVDLKISGEFVAQWKEQN 510

Query: 168 LET 170
           L T
Sbjct: 511 LMT 513

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 2/122 (1%)

Query: 50  LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
           + +GE   R +VSGL  Y+ + QL   SVV++CNLKP K RGI SQGM+LCAS T     
Sbjct: 392 VDVGEANPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCAS-TEGEQK 450

Query: 110 RVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
           +VE + PP     G+R++I     G P+  L PK+ V+ K+QVD +  D+   +WKG   
Sbjct: 451 QVEPLDPPSGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNF 510

Query: 169 ET 170
            T
Sbjct: 511 LT 512

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)

Query: 50  LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
           + +GE   R +VSGL N++   Q+ N  VV++CNLKPAK RG+LSQ M++CAS    +  
Sbjct: 177 VDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCAS----SPE 232

Query: 110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
           +VE++ PP     G R+      G PDK L+PK+ +W +IQ DL ++      +KG   E
Sbjct: 233 KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPFE 292

Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion. Modulates endothelial cell responses by degrading HIF-1A through interaction with PSMA7.

Mus musculus (taxid: 10090)

>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)

Query: 50  LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
           + +GE   R ++SGL N++   Q+ N  VV++CNLKPAK RGILSQ M++CAS    +  
Sbjct: 226 VDVGEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVMCAS----SPE 281

Query: 110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
           +VE++ PP     G R+      G PDK L+PK+ +W +IQ DL ++      +KG   E
Sbjct: 282 KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPFE 341

Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion.

Cricetulus griseus (taxid: 10029)

>sp|Q6DIJ1|SYYC_XENTR Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1

 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 2/122 (1%)

Query: 50  LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
           + +GE   R +VSGL  Y+ + QL   SVV++CNLKP K RGI SQGM+LCAS T     
Sbjct: 392 VDVGEENPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCAS-TEGEQK 450

Query: 110 RVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
           +VE + PP     G+R++I     G P+  L PK+ V+ K+QVD +  D+   +WKG   
Sbjct: 451 QVEPLDPPTGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNF 510

Query: 169 ET 170
            T
Sbjct: 511 LT 512

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2

 Score =  100 bits (249), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 73/121 (60%), Gaps = 4/121 (3%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
            + +GE   R +VSGL N++   Q+ N  V+++CNLKPAK RG+LSQ M++CAS    + 
Sbjct: 178 EVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCAS----SP 233

Query: 109 TRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
            ++E++ PP     G R+      G PDK L+PK+ +W +IQ DL ++D     +KG   
Sbjct: 234 EKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPF 293

Query: 169 E 169
           E
Sbjct: 294 E 294

Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion. Modulates endothelial cell responses by degrading HIF-1A through interaction with PSMA7.

Homo sapiens (taxid: 9606)

>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 5/141 (3%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +GE + R +VSGL  ++   +L +  VVV+CNLKP K RG+ SQGM+LCAS    N 
Sbjct: 391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVN- 449

Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
            +VE + PP     G+RVF+     G PD+ L PK+ V+ K+Q D K  D    +WK   
Sbjct: 450 RKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTN 509

Query: 168 LETVNAQRAAVDLKSDDNGHI 188
             T   +  +V  KS   G+I
Sbjct: 510 FMT---KMGSVSCKSLKGGNI 527

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q5ZJ08|SYYC_CHICK Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 5/141 (3%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +GE + R +VSGL  ++   QL +  VV++CNLKP K RG+ SQGM+LCAS +    
Sbjct: 390 KIDVGEPEPRTVVSGLVQFVPKEQLQDRLVVLLCNLKPQKMRGVESQGMVLCAS-SVGEP 448

Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
            +VE + PP  C AG+RV++     G PD  L PK+ V+ K+Q D +  ++   +WK   
Sbjct: 449 RQVEPLDPPAECCAGERVYVEGYEDGEPDDELKPKKKVFEKLQADFRISEDCIAQWKERN 508

Query: 168 LETVNAQRAAVDLKSDDNGHI 188
             T   +  ++  KS   G I
Sbjct: 509 FLT---KLGSISCKSLKGGSI 526

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 4/118 (3%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +GE + R +VSGL  ++   +L +  VVV+CNLKP K RG+ SQGM+LCAS     V
Sbjct: 391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCAS--VEGV 448

Query: 109 TR-VEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWK 164
           +R VE + PP     G+RVF+     G PD+ L PK+ V+ K+Q D K  D+   +WK
Sbjct: 449 SRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISDDCVAQWK 506

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 10/156 (6%)

Query: 38  TIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
           T+E+  +   L   ++ +GE + R +VSGL  ++   +L +  VVV+CNLKP K RG+ S
Sbjct: 377 TVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVES 436

Query: 95  QGMILCAS-ETYNNVTRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVD 152
           QGM+LCAS E  N   +VE + PP     G+RVF+     G PD+ L PK+ V+ K+Q D
Sbjct: 437 QGMLLCASIEGINR--QVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQAD 494

Query: 153 LKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHI 188
            K  +    +WK     T   +  ++  KS   G+I
Sbjct: 495 FKISEECIAQWKQTNFMT---KLGSISCKSLKGGNI 527

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
239788917	337	ACYPI004940 [Acyrthosiphon pisum]	0.572	0.362	0.455	6e-23
193641272	527	PREDICTED: tyrosyl-tRNA synthetase, cyto	0.572	0.231	0.455	6e-23
432884240	534	PREDICTED: tyrosine--tRNA ligase, cytopl	0.568	0.226	0.463	1e-22
389609055	443	tyrosyl-tRNA synthetase [Papilio xuthus]	0.553	0.266	0.429	1e-22
289740311	514	tyrosyl-tRNA synthetase [Glossina morsit	0.591	0.245	0.437	2e-22
357618194	472	putative tyrosyl-tRNA synthetase, cytopl	0.553	0.25	0.446	4e-22
242024038	531	tyrosyl-tRNA synthetase, cytoplasmic, pu	0.577	0.231	0.428	5e-22
91083743	521	PREDICTED: similar to tyrosyl-tRNA synth	0.553	0.226	0.421	5e-22
195428555	529	GK17487 [Drosophila willistoni] gi|19415	0.615	0.247	0.406	6e-22
339234385	542	tyrosyl-tRNA synthetase, cytoplasmic [Tr	0.600	0.236	0.447	8e-22

>gi|239788917|dbj|BAH71113.1| ACYPI004940 [Acyrthosiphon pisum]

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 79/123 (64%), Gaps = 1/123 (0%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +GE Q R IVSGL NY+   ++ +  V+V+CNLKPAK RGI S GM+LCAS   N V
Sbjct: 199 KIDLGEEQPRTIVSGLVNYVPINEMQDRLVIVLCNLKPAKMRGIESSGMVLCASIENNGV 258

Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
             VE + P E    G +VFI +   G PDK+L+PK+ +W ++QVDLK  +    +W+ + 
Sbjct: 259 KSVEPLEPAEGSKPGDKVFIESYEQGEPDKILNPKKKIWEQLQVDLKVSNLCEAQWQSNN 318

Query: 168 LET 170
           L T
Sbjct: 319 LMT 321

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193641272|ref|XP_001945437.1| PREDICTED: tyrosyl-tRNA synthetase, cytoplasmic [Acyrthosiphon pisum]

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 79/123 (64%), Gaps = 1/123 (0%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +GE Q R IVSGL NY+   ++ +  V+V+CNLKPAK RGI S GM+LCAS   N V
Sbjct: 389 KIDLGEEQPRTIVSGLVNYVPINEMQDRLVIVLCNLKPAKMRGIESSGMVLCASIENNGV 448

Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
             VE + P E    G +VFI +   G PDK+L+PK+ +W ++QVDLK  +    +W+ + 
Sbjct: 449 KSVEPLEPAEGSKPGDKVFIESYEQGEPDKILNPKKKIWEQLQVDLKVSNLCEAQWQSNN 508

Query: 168 LET 170
           L T
Sbjct: 509 LMT 511

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432884240|ref|XP_004074451.1| PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Oryzias latipes]

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 78/123 (63%), Gaps = 2/123 (1%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +GE + R +VSGL  Y++   L + +VV++CNLKP K RGI SQ M+LCAS      
Sbjct: 397 KIDVGEPEPRTVVSGLVAYVSQKDLQDRTVVLLCNLKPQKMRGIESQAMLLCAS-VEGEP 455

Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
            RVE + PPE  + G+RVF+    TG PD  L+PK+ VW K+QVDLK  D    +WK  +
Sbjct: 456 RRVEPLDPPEGSSPGERVFVEGYETGKPDDRLNPKKKVWEKLQVDLKVSDQCVAQWKDKK 515

Query: 168 LET 170
           L T
Sbjct: 516 LLT 518

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|389609055|dbj|BAM18139.1| tyrosyl-tRNA synthetase [Papilio xuthus]

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 85/121 (70%), Gaps = 3/121 (2%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +GE + R++VSGL NY+   ++ N +VVV+CNLKPAK RGI S+GM+LCAS   +  
Sbjct: 305 KIDLGEEEPRVVVSGLVNYVPIEEMQNRNVVVLCNLKPAKMRGIESKGMVLCAS--IDEP 362

Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
            +VE + PP++   G+R+ + +  +G PD +L+PK+ +W K+QVDLK+  +    W+G++
Sbjct: 363 KQVEPLLPPKDSQPGERIVVEDYDSGEPDDVLNPKKKIWEKLQVDLKTSADLFAVWQGNK 422

Query: 168 L 168
           L
Sbjct: 423 L 423

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740311|gb|ADD18903.1| tyrosyl-tRNA synthetase [Glossina morsitans morsitans]

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 2/128 (1%)

Query: 48  LRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNN 107
           L++ +GEG+ R I+SGL  Y+TA +L    V V+CNLKP+K RGILS+GM+LC S   + 
Sbjct: 378 LQIDLGEGEVRTIISGLVAYVTAEKLDQCLVAVLCNLKPSKMRGILSEGMVLCTSNAAH- 436

Query: 108 VTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
            T VE +  P +  AG R+      G PD+ L+PK+  W K+ VD K++D+G   WK   
Sbjct: 437 -TTVEPLIVPSSAAAGTRLTFQGYDGQPDEQLNPKKKTWEKLFVDFKTNDDGIAVWKNSF 495

Query: 168 LETVNAQR 175
           L T N ++
Sbjct: 496 LLTPNGEK 503

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618194|gb|EHJ71271.1| putative tyrosyl-tRNA synthetase, cytoplasmic [Danaus plexippus]

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 82/121 (67%), Gaps = 3/121 (2%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +GE + R IVSGL N++   ++ N  VVV+CNLKPAK RG+ S+GM+LCAS   +  
Sbjct: 334 KIDLGEDEPRTIVSGLVNFVPIEEMQNRDVVVLCNLKPAKMRGVESKGMVLCAS--IDEP 391

Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
            +VE +  P++   G R+ I    TG PD +L+PK+ VW K+QVDLK++D+    W+G++
Sbjct: 392 KQVEPLVVPKDSKPGDRIVIEGYETGEPDDVLNPKKKVWEKLQVDLKTNDDLFAVWQGNK 451

Query: 168 L 168
           L
Sbjct: 452 L 452

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024038|ref|XP_002432437.1| tyrosyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus corporis] gi|212517870|gb|EEB19699.1| tyrosyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus corporis]

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 81/126 (64%), Gaps = 3/126 (2%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++ +G+ + R +VSGL NY++  +L N  VVV+CNLKP K RGI S GM+LCAS+  +  
Sbjct: 395 KIDVGDDEPRTVVSGLVNYISIEELKNKLVVVLCNLKPVKMRGIESCGMVLCASK--DEP 452

Query: 109 TRVEVVRPPENCTAGQRVFIHNRT-GIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
             VE++ PPE    G ++F+   T G PD +L+PK+ +W K+Q DLK++      WK ++
Sbjct: 453 KEVEILTPPEGSQGGDKIFVDGFTNGTPDDVLNPKKKIWEKLQEDLKTNSVCEACWKDNQ 512

Query: 168 LETVNA 173
           L T N 
Sbjct: 513 LLTKNG 518

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083743|ref|XP_971153.1| PREDICTED: similar to tyrosyl-tRNA synthetase [Tribolium castaneum] gi|270006799|gb|EFA03247.1| hypothetical protein TcasGA2_TC013181 [Tribolium castaneum]

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 80/121 (66%), Gaps = 3/121 (2%)

Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           ++++GE   R ++SGL NY +A +L N  VV++CNLKP+K RGI S GM+LCAS   +  
Sbjct: 384 KIEVGEDAPRTVISGLVNYYSAEELLNRMVVLLCNLKPSKMRGIESTGMVLCAST--DEP 441

Query: 109 TRVEVVRPPENCTAGQR-VFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
            +VE + PPE+C+ G + VF +   G P+ +L+PK+ VW K+Q D +++ +   +WK   
Sbjct: 442 KKVETLIPPESCSPGDKLVFENYEDGTPEPVLNPKKKVWEKLQADFRTNSDCIAQWKSSN 501

Query: 168 L 168
           L
Sbjct: 502 L 502

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428555|ref|XP_002062338.1| GK17487 [Drosophila willistoni] gi|194158423|gb|EDW73324.1| GK17487 [Drosophila willistoni]

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 2/133 (1%)

Query: 48  LRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNN 107
           L++ + E Q R I+SGL  ++T  +L    V V+CNLKP+K RGILS+GM+LC S   + 
Sbjct: 393 LKIDLAEAQPRTIISGLVKFVTQEELDQRLVAVLCNLKPSKMRGILSEGMVLCTSNADHT 452

Query: 108 VTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
           V  VE +  P   T G R+     +G PD++L+PK+ VW K+ VDLK++ +G   WK   
Sbjct: 453 V--VEPIVLPSTATPGSRLAFEGFSGTPDELLNPKKKVWEKLSVDLKTNADGQAVWKDSF 510

Query: 168 LETVNAQRAAVDL 180
           L T    + +  L
Sbjct: 511 LLTTEGDKLSSKL 523

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|339234385|ref|XP_003382309.1| tyrosyl-tRNA synthetase, cytoplasmic [Trichinella spiralis] gi|316978683|gb|EFV61632.1| tyrosyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 81/134 (60%), Gaps = 6/134 (4%)

Query: 41  RQKEEAK----LRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQG 96
           RQ EEA+      + +GE + R IVSGLA +     L +  VVV+CNLKPAK RGILS G
Sbjct: 395 RQHEEAENLFVEEIDVGENEPRTIVSGLAQHYHLDDLCDRFVVVLCNLKPAKLRGILSNG 454

Query: 97  MILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSD 156
           M+LCAS    +  RV+++ PPE  + G  ++       PD +L+PK+ VW KIQ DL++ 
Sbjct: 455 MVLCASS--ESPRRVQLIEPPEGSSPGDVIYAEGIERHPDDVLNPKKKVWEKIQADLRTS 512

Query: 157 DNGHIRWKGHRLET 170
            NG   WK   L+T
Sbjct: 513 HNGEPIWKDSILKT 526

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
FB|FBgn0027080	525	Aats-tyr "Tyrosyl-tRNA synthet	0.615	0.249	0.398	6.4e-22
ZFIN|ZDB-GENE-060825-144	315	aimp1 "aminoacyl tRNA syntheta	0.549	0.371	0.413	1.1e-21
UNIPROTKB|Q4G079	315	Aimp1 "Small inducible cytokin	0.544	0.368	0.416	2.4e-21
ZFIN|ZDB-GENE-030425-2	529	yars "tyrosyl-tRNA synthetase"	0.568	0.228	0.455	3e-21
UNIPROTKB|I3LFC4	319	AIMP1 "Uncharacterized protein	0.544	0.363	0.408	8e-21
UNIPROTKB|E2QXI3	321	AIMP1 "Uncharacterized protein	0.544	0.361	0.4	1.3e-20
UNIPROTKB|Q12904	312	AIMP1 "Aminoacyl tRNA synthase	0.525	0.358	0.405	1.3e-20
MGI|MGI:102774	310	Aimp1 "aminoacyl tRNA syntheta	0.544	0.374	0.408	1.7e-20
UNIPROTKB|Q3ZBX5	322	SCYE1 "Uncharacterized protein	0.544	0.360	0.408	2.1e-20
UNIPROTKB|Q29465	528	YARS "Tyrosine--tRNA ligase, c	0.633	0.255	0.401	2.9e-20

FB|FBgn0027080 Aats-tyr "Tyrosyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 6.4e-22, P = 6.4e-22
 Identities = 53/133 (39%), Positives = 79/133 (59%)

Query:    48 LRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNN 107
             L++ + E Q R I+SGL  ++T  +L    V V+CNLKP+K RGILS+GM+LC S   + 
Sbjct:   389 LKIDLAEAQPRTIISGLVKFVTEEELNQRLVAVLCNLKPSKMRGILSEGMVLCTSNADHT 448

Query:   108 VTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
             V  VE +  P   TAG R+     +G PD+ L+PK+ VW K+  D K++ +G   WK + 
Sbjct:   449 V--VEPIVLPATATAGSRLSFEGFSGTPDEQLNPKKKVWEKLSADFKTNSDGLAVWKDNF 506

Query:   168 LETVNAQRAAVDL 180
             L T   ++ +  L
Sbjct:   507 LLTPEGEKLSSKL 519

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA;NAS

GO:0004831 "tyrosine-tRNA ligase activity" evidence=ISS;IDA;NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

ZFIN|ZDB-GENE-060825-144 aimp1 "aminoacyl tRNA synthetase complex-interacting multifunctional protein 1" [Danio rerio (taxid:7955)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/121 (41%), Positives = 72/121 (59%)

Query:    49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
             ++ +GE   R +VSGL  ++   Q+ N   V++CNLKPAK RG+LSQ M++CAS      
Sbjct:   181 QVDVGEAAPRTVVSGLVKHIPLDQMQNRMAVLLCNLKPAKMRGVLSQAMVMCASSP---- 236

Query:   109 TRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
              +VE++ PP    AG R+      G PDK L+PK+ VW ++Q DL +DD     +KG   
Sbjct:   237 EKVEILDPPSGAAAGDRITFQGFPGEPDKELNPKKKVWEQVQPDLLTDDQCVATYKGVAF 296

Query:   169 E 169
             E
Sbjct:   297 E 297

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q4G079 Aimp1 "Small inducible cytokine subfamily E, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 50/120 (41%), Positives = 72/120 (60%)

Query:    50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
             + +GE   R +VSGL N++   Q+ N  VV++CNLKPAK RG+LSQ M++CAS       
Sbjct:   182 VDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSP----E 237

Query:   110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
             +VE++ PP     G R+      G PDK L+PK+ +W +IQ DL ++D     +KG   E
Sbjct:   238 KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGAPFE 297

GO:0000049 "tRNA binding" evidence=IEA

ZFIN|ZDB-GENE-030425-2 yars "tyrosyl-tRNA synthetase" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 56/123 (45%), Positives = 74/123 (60%)

Query:    49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
             ++ +GE Q R +VSGL  Y+T  QL +  VV++CNLKP K RGI SQ M+LCAS      
Sbjct:   392 KIDVGEEQPRTVVSGLVAYITEEQLQDRLVVLLCNLKPQKMRGIESQAMVLCAS-IEGEP 450

Query:   109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
              +VE + PPE   AG RV++    +G PD  L PK+ V+ K+QVDLK       +WK   
Sbjct:   451 RKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEKLQVDLKISGEFVAQWKEQN 510

Query:   168 LET 170
             L T
Sbjct:   511 LMT 513

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004831 "tyrosine-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|I3LFC4 AIMP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 49/120 (40%), Positives = 73/120 (60%)

Query:    50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
             + +GE   R +VSGL N++   Q+ N  V+++CNLKPAK RG++SQ M++CAS       
Sbjct:   186 VDVGETAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVVSQAMVMCASSP----E 241

Query:   110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
             +VE++ PP     G RV      G PDK L+PK+ +W +IQ DL ++D+    +KG   E
Sbjct:   242 KVEILAPPHGSVPGDRVTFDAFPGEPDKELNPKKKIWEQIQPDLYTNDDCVATYKGAPFE 301

GO:0050900 "leukocyte migration" evidence=IEA

GO:0043498 "cell surface binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|E2QXI3 AIMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 48/120 (40%), Positives = 72/120 (60%)

Query:    50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
             + +GE   R +VSGL N++   Q+ N  V+++CNLKPAK RG+LSQ M++CAS       
Sbjct:   188 VDVGETAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP----E 243

Query:   110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
             +VE++ PP     G ++      G PDK L+PK+ +W +IQ DL ++D     +KG   E
Sbjct:   244 KVEILAPPTGSVPGDKIVFDAFPGEPDKELNPKKKIWEQIQPDLYTNDECVATYKGAPFE 303

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q12904 AIMP1 "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 47/116 (40%), Positives = 71/116 (61%)

Query:    50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
             + +GE   R +VSGL N++   Q+ N  V+++CNLKPAK RG+LSQ M++CAS       
Sbjct:   179 VDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP----E 234

Query:   110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKG 165
             ++E++ PP     G R+      G PDK L+PK+ +W +IQ DL ++D     +KG
Sbjct:   235 KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKG 290

GO:0001525 "angiogenesis" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA

GO:0006935 "chemotaxis" evidence=TAS

GO:0007165 "signal transduction" evidence=NAS

GO:0009611 "response to wounding" evidence=TAS

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IDA

GO:0043498 "cell surface binding" evidence=IDA

GO:0000049 "tRNA binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0050900 "leukocyte migration" evidence=IDA

GO:0005125 "cytokine activity" evidence=ISS

GO:0007267 "cell-cell signaling" evidence=IDA

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:102774 Aimp1 "aminoacyl tRNA synthetase complex-interacting multifunctional protein 1" [Mus musculus (taxid:10090)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 49/120 (40%), Positives = 71/120 (59%)

Query:    50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
             + +GE   R +VSGL N++   Q+ N  VV++CNLKPAK RG+LSQ M++CAS       
Sbjct:   177 VDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSP----E 232

Query:   110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
             +VE++ PP     G R+      G PDK L+PK+ +W +IQ DL ++      +KG   E
Sbjct:   233 KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPFE 292

GO:0000049 "tRNA binding" evidence=ISO

GO:0001525 "angiogenesis" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005125 "cytokine activity" evidence=IDA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=ISO

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043498 "cell surface binding" evidence=ISO

GO:0050900 "leukocyte migration" evidence=ISO;IDA

UNIPROTKB|Q3ZBX5 SCYE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 49/120 (40%), Positives = 72/120 (60%)

Query:    50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
             + +GE   R +VSGL N++   Q+ N  VV++CNLKPAK RG++SQ M++CAS       
Sbjct:   189 VDVGETAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVVSQAMVMCASSP----E 244

Query:   110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
             +VE++ PP     G R+      G PDK L+PK+ +W +IQ DL ++D     +KG   E
Sbjct:   245 KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLYTNDVCVATYKGAPFE 304

GO:0050900 "leukocyte migration" evidence=IEA

GO:0043498 "cell surface binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q29465 YARS "Tyrosine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 247 (92.0 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 57/142 (40%), Positives = 81/142 (57%)

Query:    49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCAS-ETYNN 107
             ++ +GE + R +VSGL  ++   +L +  VVV+CNLKP K RG+ SQGM+LCAS E  N 
Sbjct:   391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVNR 450

Query:   108 VTRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGH 166
               +VE + PP     G+RVF+     G PD+ L PK+ V+ K+Q D K  D    +WK  
Sbjct:   451 --KVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQT 508

Query:   167 RLETVNAQRAAVDLKSDDNGHI 188
                T   +  +V  KS   G+I
Sbjct:   509 NFMT---KMGSVSCKSLKGGNI 527

GO:0005737 "cytoplasm" evidence=IEA

GO:0004831 "tyrosine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	213
PLN02610	801	PLN02610, PLN02610, probable methionyl-tRNA synthe	3e-29
cd02799	105	cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-doma	1e-27
cd02153	99	cd02153, tRNA_bindingDomain, The tRNA binding doma	1e-23
pfam01588	95	pfam01588, tRNA_bind, Putative tRNA binding domain	4e-21
cd02800	105	cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-doma	2e-20
PRK12267	648	PRK12267, PRK12267, methionyl-tRNA synthetase; Rev	1e-19
TIGR00399	137	TIGR00399, metG_C_term, methionyl-tRNA synthetase	6e-17
PRK00133	673	PRK00133, metG, methionyl-tRNA synthetase; Reviewe	6e-15
cd02798	107	cd02798, tRNA_bind_CsaA, tRNA-binding-domain-conta	4e-11
COG0073	123	COG0073, ARC1, EMAP domain [General function predi	5e-11
PRK10089	112	PRK10089, PRK10089, tRNA-binding protein; Provisio	5e-04

>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase

 Score =  114 bits (286), Expect = 3e-29
 Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 2/107 (1%)

Query: 52  IGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRV 111
           +GEG  R +VSGL  Y+   ++ N  V V+CNLKPA  RGI SQ M+L AS +  + T+V
Sbjct: 669 VGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLAASNS--DHTKV 726

Query: 112 EVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDN 158
           E+V PPE+   G+RV      G PD +L+PK+ VW  +Q DL ++  
Sbjct: 727 ELVEPPESAAVGERVTFPGFEGEPDDVLNPKKKVWETLQPDLHTNSE 773

Length = 801

>gnl|CDD|239198 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-domain-containing EMAP2-like proteins

 Score =  100 bits (251), Expect = 1e-27
 Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 51  QIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTR 110
            +GE + R IVSGL  ++   Q+ N  VVV+CNLKP K RG+ SQGM+LCAS    +  +
Sbjct: 31  DLGEEEPRTIVSGLVKFVPLEQMQNRLVVVLCNLKPRKMRGVKSQGMVLCAS--NADHEK 88

Query: 111 VEVVRPPENCTAGQRVF 127
           VE++ PPE    G+RV 
Sbjct: 89  VELLEPPEGAKPGERVT 105

This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain. Length = 105

>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known as the Myf domain in literature

 Score = 89.9 bits (224), Expect = 1e-23
 Identities = 33/80 (41%), Positives = 44/80 (55%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
            L++ IGE + R IVSG AN     +L    VVV  NLKP K RG+ S+GM+L A E   
Sbjct: 20  VLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPKKLRGVESEGMLLSAEELGL 79

Query: 107 NVTRVEVVRPPENCTAGQRV 126
               V ++  PE+   G R+
Sbjct: 80  EEGSVGILELPEDAPVGDRI 99

This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. An EMAP-II-like cytokine is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain. For homodimeric members of this group which include CsaA, Trbp111 and Escherichia coli MetRS this domain acts as a dimerization domain. Length = 99

>gnl|CDD|216589 pfam01588, tRNA_bind, Putative tRNA binding domain

 Score = 83.4 bits (207), Expect = 4e-21
 Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 38  TIERQKEEAKLR---LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
             E+     KL    + +GE + R IVSG  N     +L    VVVV NLKPAK RG+ S
Sbjct: 8   EAEKHPNADKLLVLKVDVGEEE-RQIVSGAVNVYPPEELVGKLVVVVANLKPAKLRGVES 66

Query: 95  QGMILCASETYNNVTRVEVVRPPENCTAGQR 125
           +GMIL A E   +   V ++ PP +   G R
Sbjct: 67  EGMILSAEE--LDGGSVGLLEPPGDVPPGTR 95

This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme. This domain may perform a common function in tRNA aminoacylation. Length = 95

>gnl|CDD|239199 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins

 Score = 82.2 bits (204), Expect = 2e-20
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 39  IERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMI 98
           +E   +  KL + +GE + R IVSG+A +    +L    VVVV NLKP K RG+ SQGMI
Sbjct: 22  VEGSDKLLKLTVDLGEEE-RQIVSGIAKFYPPEELVGKKVVVVANLKPRKLRGVESQGMI 80

Query: 99  LCASETYNNVTRVEVVRPPENCTAGQRV 126
           L A +      +++++ P E    G RV
Sbjct: 81  LAAEDG----GKLKLLTPDEEVEPGSRV 104

This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain. Length = 105

>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed

 Score = 86.0 bits (214), Expect = 1e-19
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
           KL++ +GE + R IVSG+A +    +L    VVVV NLKPAK  G  SQGMIL A +   
Sbjct: 572 KLQVDLGEEEPRQIVSGIAKFYPPEELVGKKVVVVANLKPAKLMGEESQGMILAAEDD-- 629

Query: 107 NVTRVEVVRPPENCTAGQRV 126
              ++ ++   +    G +V
Sbjct: 630 --GKLTLLTVDKEVPNGSKV 647

Length = 648

>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal region/beta chain

 Score = 74.0 bits (182), Expect = 6e-17
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 39  IERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMI 98
           +E+  +  KL+L +G+ + R IVSG+A Y T  +L    V+VV NLKPAK  G+ S+GMI
Sbjct: 53  VEKSDKLLKLKLDLGDEK-RQIVSGIAGYYTPEELVGKKVIVVANLKPAKLFGVKSEGMI 111

Query: 99  LCASETYNNVTRVEVVRPPENCTAGQRV 126
           L A +    +    ++ P +   AG+R+
Sbjct: 112 LAAEDDGKVLF---LLSPDQEAIAGERI 136

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by This model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by This model [Protein synthesis, tRNA aminoacylation]. Length = 137

>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed

 Score = 72.5 bits (179), Expect = 6e-15
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
           KL L +GE   R + SG+ +     +L    VV+V NL P K +  +S+GM+L A     
Sbjct: 597 KLTLDLGEET-RQVFSGIKSAYDPEELVGKLVVMVANLAPRKMKFGVSEGMVLAAGPGGG 655

Query: 107 NVTRVEVVRPPENCTAGQRV 126
           ++    ++ P E    G RV
Sbjct: 656 DLF---LLEPDEGAKPGMRV 672

Length = 673

>gnl|CDD|239197 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-containing CsaA-like proteins

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCA 101
           KL++  GE   +   + +  Y    +L    VV V N  P +  G+LS+ ++L A
Sbjct: 31  KLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVNFPPKQIAGVLSEVLVLGA 85

CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain. Length = 107

>gnl|CDD|223151 COG0073, ARC1, EMAP domain [General function prediction only]

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 46  AKLRLQIGEG-QDRLIVSGLANYMTAFQLYNTSVVVVCN---LKPAKFRGILSQGMILCA 101
             L++ +G+  + R IV G  N+    +L    V  V N   LKPAK RG+ S+GM+L A
Sbjct: 39  LVLKVDLGDEKEPRQIVCGAPNFYAGEKLVGAKVGAVLNGGKLKPAKLRGVESEGMLLSA 98

Query: 102 SE 103
            E
Sbjct: 99  EE 100

Length = 123

>gnl|CDD|182232 PRK10089, PRK10089, tRNA-binding protein; Provisional

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 64  LANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCA 101
           +  + T  +L    VV V N  P +  G +S+ ++L  
Sbjct: 52  ITPHYTPEELIGKQVVAVVNFPPKQIAGFMSEVLVLGF 89

Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
KOG2241|consensus	255		100.0
PLN02610	801	probable methionyl-tRNA synthetase	100.0
cd02798	107	tRNA_bind_CsaA tRNA-binding-domain-containing CsaA	99.93
TIGR02222	107	chap_CsaA export-related chaperone CsaA. This mode	99.92
PRK10089	112	tRNA-binding protein; Provisional	99.91
PF01588	95	tRNA_bind: Putative tRNA binding domain; InterPro:	99.91
cd02799	105	tRNA_bind_EMAP-II_like tRNA-binding-domain-contain	99.91
cd02153	99	tRNA_bindingDomain The tRNA binding domain is also	99.9
cd02800	105	tRNA_bind_EcMetRS_like tRNA-binding-domain-contain	99.89
COG0073	123	ARC1 EMAP domain [General function prediction only	99.88
TIGR00399	137	metG_C_term methionyl-tRNA synthetase C-terminal r	99.86
PRK12267	648	methionyl-tRNA synthetase; Reviewed	99.79
cd02796	103	tRNA_bind_bactPheRS tRNA-binding-domain-containing	99.76
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	99.75
TIGR00472	798	pheT_bact phenylalanyl-tRNA synthetase, beta subun	99.55
PRK00629	791	pheT phenylalanyl-tRNA synthetase subunit beta; Re	99.49
TIGR02306	341	RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me	98.79
COG2517	219	Predicted RNA-binding protein containing a C-termi	98.75
PHA02142	366	putative RNA ligase	84.46
PTZ00385	659	lysyl-tRNA synthetase; Provisional	84.36

>KOG2241|consensus

Probab=100.00  E-value=1.1e-50  Score=355.70  Aligned_cols=166  Identities=36%  Similarity=0.576  Sum_probs=154.1

Q ss_pred             CCCcCCceeeEEEEEEEEe------ecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecce
Q psy2025          19 LGNALAWHVEDCDVDAQMH------TIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGI   92 (213)
Q Consensus        19 ~~~~~~~~v~~~~ldirV~------~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv   92 (213)
                      .+++-.-....+.||+||+      +||++|+||+++||+|+.++|||||||++|.+.|+|+||+|+|+|||||+||||+
T Consensus        84 ~~~~~~~~p~~~~LDiRvG~Ivka~kHpdADsLYve~IdvgE~~PRTVvSGLvk~vpleemq~R~VvvlcNLKPakmRgv  163 (255)
T KOG2241|consen   84 RGPMMEAGPDVSLLDIRVGKIVKAGKHPDADSLYVEEIDVGEAEPRTVVSGLVKHVPLEEMQNRLVVVLCNLKPAKMRGV  163 (255)
T ss_pred             cCCcccCCCCcceeeEEEeEEEEecccCCcceeEEEEeeecccccceeehhhHhhCCHHHHhCCeEEEEecccccccccc
Confidence            3444445558889999977      5799999999999999999999999999999999999999999999999999999


Q ss_pred             ecceEEeeeecCCCCCCcEEEEcCCCCCCCCceEEeCCCCCCCCCCCCCCccchhhhcCceEEcCCceEEECCeEEEEcC
Q psy2025          93 LSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVN  172 (213)
Q Consensus        93 ~SeGMLLsa~e~~~~~~~V~lL~pp~~a~~G~rV~~~g~~~~P~~~l~~Kkk~we~i~~~L~t~~~g~a~ykg~~l~t~~  172 (213)
                      +|+||+|||+++ ++ ..||+|.||.++.+|+||+|+||+++|+++||||||+||++|+||+|+++|+|+|||.+|+|+.
T Consensus       164 ~S~gMvlcaSs~-d~-~~VE~l~pP~gs~pGdRv~fegfegePd~~LnPKKKiwE~iqpdl~t~~~~va~yKg~~~~~~~  241 (255)
T KOG2241|consen  164 KSQGMVLCASSP-DK-SVVEPLAPPAGSKPGDRVTFEGFEGEPDKELNPKKKIWEKIQPDLKTNEEGVATYKGAPFETKK  241 (255)
T ss_pred             ccceeEEecCCc-cc-ceeeeccCCCCCCCCCeeeecCCCCCcchhcChhhhhHHHhCCCcccccceEEEecCCceeccC
Confidence            999999999975 43 6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeeecCCCCCceEE
Q psy2025         173 AQRAAVDLKSDDNGHIR  189 (213)
Q Consensus       173 g~~~~~~l~~~~~g~i~  189 (213)
                      |.|+++||+   ||+|+
T Consensus       242 G~~~a~ti~---n~~Ik  255 (255)
T KOG2241|consen  242 GVCTAQTIS---NGGIK  255 (255)
T ss_pred             ceEEEeecc---CCCCC
Confidence            999999988   77764

>PLN02610 probable methionyl-tRNA synthetase

Probab=100.00  E-value=5.9e-39  Score=319.21  Aligned_cols=158  Identities=35%  Similarity=0.582  Sum_probs=147.2

Q ss_pred             eeEEEEEEEEe------ecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEee
Q psy2025          27 VEDCDVDAQMH------TIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILC  100 (213)
Q Consensus        27 v~~~~ldirV~------~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLs  100 (213)
                      .++..+|+||+      +||++|+||+++||+|++++||||||+++++++|+|+|++|++++||||+||||++|+|||||
T Consensus       638 ~~~~~~dlrVg~I~~~~~hp~adkL~~~~Vd~G~~~~r~ivsG~~~~~~~e~l~G~~Vvv~~nlkp~klrGv~S~GMll~  717 (801)
T PLN02610        638 IDVSRLDIRVGLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLA  717 (801)
T ss_pred             ccceeeeeEEEEEEEEEeecCCCcceEEEEEeCCCceEEEEeCccccCChHHhCCCEEEEEEEecccccCCcccceeEEe
Confidence            47888999976      579999999999999987799999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCcEEEEcCCCCCCCCceEEeCCCCCCCCCCCCCCccchhhhcCceEEcCCceEEECCeEEEEcCeeEEeeec
Q psy2025         101 ASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDL  180 (213)
Q Consensus       101 a~e~~~~~~~V~lL~pp~~a~~G~rV~~~g~~~~P~~~l~~Kkk~we~i~~~L~t~~~g~a~ykg~~l~t~~g~~~~~~l  180 (213)
                      +++. ++ ++++++.||+++++|++|.|+|++++|++++++|+|+||+++++|+|+++|+|+|+|.+|+|++|+|++++|
T Consensus       718 a~~~-~~-~~~~ll~~~~~~~~G~~v~~~~~~~~p~~~~~~k~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~  795 (801)
T PLN02610        718 ASNS-DH-TKVELVEPPESAAVGERVTFPGFEGEPDDVLNPKKKVWETLQPDLHTNSELVACYKDVPFTTSAGVCKVASI  795 (801)
T ss_pred             cccC-CC-CceEEEeCCCCCCCCCEEEeCCCCCCcccccCcccchHHHhCCCCEECCceEEEECCEEEEecCCCeEcccC
Confidence            9863 32 468899999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCceEE
Q psy2025         181 KSDDNGHIR  189 (213)
Q Consensus       181 ~~~~~g~i~  189 (213)
                      +   ||.|+
T Consensus       796 ~---~~~i~  801 (801)
T PLN02610        796 A---NGSIR  801 (801)
T ss_pred             C---CCEeC
Confidence            6   88874

>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins

Probab=99.93  E-value=9.7e-26  Score=175.43  Aligned_cols=88  Identities=24%  Similarity=0.387  Sum_probs=80.9

Q ss_pred             EeecCCC-CceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEE
Q psy2025          36 MHTIERQ-KEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVV  114 (213)
Q Consensus        36 V~~hp~a-dkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL  114 (213)
                      +.+||++ ++||+++||+|++++|||+||+++||++|+|+|++|++++||||+||||+.|||||||+++.+   +.+.++
T Consensus        19 ~~~~p~a~~kL~~~~Vd~G~~~~r~ivsg~~~~~~~e~l~gk~v~~v~Nlkp~k~~G~~S~gm~l~~~~~~---~~~~~~   95 (107)
T cd02798          19 VEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVNFPPKQIAGVLSEVLVLGADDEG---GEVVLL   95 (107)
T ss_pred             EEECCCcccceEEEEEEecCccceehhhhhhhcCCHHHhcCCcEEEEeCCCCceecceeccEEEEEEEcCC---CcEEEe
Confidence            3568999 999999999998678999999999999999999999999999999999999999999998642   568899


Q ss_pred             cCCCCCCCCceE
Q psy2025         115 RPPENCTAGQRV  126 (213)
Q Consensus       115 ~pp~~a~~G~rV  126 (213)
                      .||.++++|+||
T Consensus        96 ~~~~~~~~G~~i  107 (107)
T cd02798          96 VPDREVPNGAKV  107 (107)
T ss_pred             cCCCCCCCcCCC
Confidence            999999999986

CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.

>TIGR02222 chap_CsaA export-related chaperone CsaA

Probab=99.92  E-value=5.4e-25  Score=171.57  Aligned_cols=89  Identities=19%  Similarity=0.319  Sum_probs=80.4

Q ss_pred             EeecCCCCc-eEEEEEEcCCC-CeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEE
Q psy2025          36 MHTIERQKE-EAKLRLQIGEG-QDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEV  113 (213)
Q Consensus        36 V~~hp~adk-Lyv~~VDiG~~-~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~l  113 (213)
                      +.+||++++ ||+++||+|++ +.|||+||++.+|++|+|+|++|++++||||+||||+.|||||||+++.+   +.+.+
T Consensus        17 ~~~~p~a~k~L~~l~vd~G~~~~~r~ivsgi~~~~~~e~L~gk~v~~v~Nl~p~k~~G~~S~gMil~~~~~~---~~~~l   93 (107)
T TIGR02222        17 AEPFPEARKPAYKLWVDFGTEIGVKQSSAQITKLYKPEDLIGRLVVAVVNFPPKQIAGFLSEVLVLGVIDEQ---GRVVL   93 (107)
T ss_pred             EeecCCcccceeEEEEEecCcCCcceEehhhhhhCCHHHhCCCeEEEEECCCCceeCCccccEEEEEEECCC---CeEEE
Confidence            356899998 99999999964 46999999999999999999999999999999999999999999998642   45889


Q ss_pred             EcCCCCCCCCceEE
Q psy2025         114 VRPPENCTAGQRVF  127 (213)
Q Consensus       114 L~pp~~a~~G~rV~  127 (213)
                      +.|+.++++|++|+
T Consensus        94 ~~~~~~~~~G~~v~  107 (107)
T TIGR02222        94 LQPDRPVPNGTKIA  107 (107)
T ss_pred             ecCCCCCCCcCCcC
Confidence            99999999999985

This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus.

>PRK10089 tRNA-binding protein; Provisional

Probab=99.91  E-value=1.2e-24  Score=170.63  Aligned_cols=89  Identities=19%  Similarity=0.308  Sum_probs=80.9

Q ss_pred             EeecCCCCce-EEEEEEcCCC-CeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEE
Q psy2025          36 MHTIERQKEE-AKLRLQIGEG-QDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEV  113 (213)
Q Consensus        36 V~~hp~adkL-yv~~VDiG~~-~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~l  113 (213)
                      +.+||++++| |+++||+|++ +.|||+||++.+|++|+|+|++|++++||||+||||+.|||||||+++.+   +.+++
T Consensus        22 ~~~~p~a~kL~~~l~vd~G~~~~~r~i~sgl~~~~~~eel~gk~v~~v~Nlkp~~~~G~~S~gmil~~~~~~---~~~~l   98 (112)
T PRK10089         22 AEPFPEARKPAYKLWIDFGEEIGVKQSSAQITPHYTPEELIGKQVVAVVNFPPKQIAGFMSEVLVLGFEDED---GEVVL   98 (112)
T ss_pred             EEEcCCcCcceEEEEEEecCccCcceEehhhcccCCHHHHccCcEEEEECCCcceecCccccEEEEEEEcCC---CeEEE
Confidence            4568999999 9999999985 48999999999999999999999999999999999999999999998642   35889


Q ss_pred             EcCCCCCCCCceEE
Q psy2025         114 VRPPENCTAGQRVF  127 (213)
Q Consensus       114 L~pp~~a~~G~rV~  127 (213)
                      +.|+.++++|+||+
T Consensus        99 ~~p~~~~~~G~~i~  112 (112)
T PRK10089         99 LTPDRPVPNGVKLV  112 (112)
T ss_pred             ecCCCCCCCcCCcC
Confidence            99999999999974

>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II

Probab=99.91  E-value=4.9e-24  Score=161.98  Aligned_cols=94  Identities=34%  Similarity=0.454  Sum_probs=81.2

Q ss_pred             eeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCC
Q psy2025          27 VEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN  106 (213)
Q Consensus        27 v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~  106 (213)
                      +.+.++  .+++||++||||+++||+|+++ |||+||++|+++++++.|+++++++|+++++|+|+.|||||||+++.++
T Consensus         2 ~vg~I~--~~~~hp~sdkL~~~~Vd~G~~~-~~Ivsg~~n~~~~~~lv~~~~~~v~n~~~~~i~Gv~SeGMlls~~e~~~   78 (95)
T PF01588_consen    2 RVGKIL--EVEPHPNSDKLYVLKVDIGEEE-RQIVSGAKNVYEPEVLVGKKVVVVANLKPRKIRGVESEGMLLSASELGD   78 (95)
T ss_dssp             EEEEEE--EEEEETTSSSEEEEEEESSSSE-EEEEESCTTTSTHHHHTTTEEEEETTSCBEEETTEEEESEE-EEECSTS
T ss_pred             EEEEEE--EEEECCCCCEEEEEEEEeCCce-EEEEeccccccChhhhcceeEEEEEccCCcEEEeccCCEEEEEeeccCC
Confidence            355666  4556899999999999999965 9999999999999999999999999999999999999999999998322


Q ss_pred             CCCcEEEEcCCCCCCCCce
Q psy2025         107 NVTRVEVVRPPENCTAGQR  125 (213)
Q Consensus       107 ~~~~V~lL~pp~~a~~G~r  125 (213)
                        ....++.+|+++++|+|
T Consensus        79 --~~~~ll~~~~~~~~G~~   95 (95)
T PF01588_consen   79 --GSVGLLVLPDDAPPGED   95 (95)
T ss_dssp             --SEEEEEEESSTS-TTSB
T ss_pred             --CCEEEEECCCCCCCCCC
Confidence              45678899999999986

G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....

>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins

Probab=99.91  E-value=1.2e-23  Score=162.38  Aligned_cols=90  Identities=41%  Similarity=0.684  Sum_probs=81.4

Q ss_pred             EeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEEc
Q psy2025          36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVR  115 (213)
Q Consensus        36 V~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL~  115 (213)
                      +.+||++++||+++||+|.++++||+||+.+++++++++|++|++++||+|++|+|+.||||+||+.+.+.  +.+.++.
T Consensus        16 ~~~~p~s~kL~~l~Vd~G~~~~~~Ivsg~~~~~~~~~~~g~~v~~l~nl~~~~~~G~~S~GMll~~~~~~~--~~~~~~~   93 (105)
T cd02799          16 VRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVVLCNLKPRKMRGVKSQGMVLCASNADH--EKVELLE   93 (105)
T ss_pred             EEecCCCCccEEEEEEeCCCcEEEEEcCccccCCHHHhCCCEEEEEEeeccceECCeeeceEEEEeccCCC--CcEEEEE
Confidence            35689999999999999977789999999999999999999999999999999999999999999887431  3577899


Q ss_pred             CCCCCCCCceEE
Q psy2025         116 PPENCTAGQRVF  127 (213)
Q Consensus       116 pp~~a~~G~rV~  127 (213)
                      ||.++++|++|+
T Consensus        94 ~~~~~~~G~~i~  105 (105)
T cd02799          94 PPEGAKPGERVT  105 (105)
T ss_pred             CCCCCCCCCEeC
Confidence            999999999984

This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.

>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature

Probab=99.90  E-value=5.7e-23  Score=156.18  Aligned_cols=97  Identities=35%  Similarity=0.468  Sum_probs=84.5

Q ss_pred             eEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCC
Q psy2025          28 EDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNN  107 (213)
Q Consensus        28 ~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~  107 (213)
                      ++.+++  +.+||++++||+++||+|++..++|+||+.++|++++++|++|++++||+|++|+|+.|+|||||+++.+..
T Consensus         3 vg~I~~--~~~~p~~~kL~~~~vd~G~~~~~~ivsg~~~~~~~~~~~g~~v~~~~~l~~~~~~g~~S~GMl~s~~~~g~~   80 (99)
T cd02153           3 VGKIVE--AEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPKKLRGVESEGMLLSAEELGLE   80 (99)
T ss_pred             EEEEEE--EEECCCCCCCEEEEEEeCCCcEEEEEeCCcccCChHHhCCCEEEEEEecccccCCCeecccEEeeccccCCC
Confidence            456664  478999999999999999767899999999999999999999999999999999999999999999996321


Q ss_pred             CCcEEEEcCCCCCCCCceE
Q psy2025         108 VTRVEVVRPPENCTAGQRV  126 (213)
Q Consensus       108 ~~~V~lL~pp~~a~~G~rV  126 (213)
                      .+...++.+|.++++|+++
T Consensus        81 ~~~~~i~~~~~~~~~G~~~   99 (99)
T cd02153          81 EGSVGILELPEDAPVGDRI   99 (99)
T ss_pred             CCceEEEECCCCCCCCCcC
Confidence            1345678888889999875

This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi

>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins

Probab=99.89  E-value=1.1e-22  Score=156.89  Aligned_cols=87  Identities=40%  Similarity=0.656  Sum_probs=80.4

Q ss_pred             EeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEEc
Q psy2025          36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVR  115 (213)
Q Consensus        36 V~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL~  115 (213)
                      +.+||++++||+++||+|. ++++|+||++++|.++++.|+++++++||+|++|||+.|+|||||+.+.    +.++++.
T Consensus        19 ~~~~p~a~kL~~~~vd~G~-~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~S~GMl~s~~~~----~~~~l~~   93 (105)
T cd02800          19 AERVEGSDKLLKLTVDLGE-EERQIVSGIAKFYPPEELVGKKVVVVANLKPRKLRGVESQGMILAAEDG----GKLKLLT   93 (105)
T ss_pred             EEecCCCCcceEEEEEeCC-eEEEEEeCcccccCHhHhccCceEeEeeECCccCCCeEeceEEEEecCC----CeEEEEe
Confidence            4578999999999999998 7899999999999999999999999999999999999999999999874    4588999


Q ss_pred             CCCCCCCCceEE
Q psy2025         116 PPENCTAGQRVF  127 (213)
Q Consensus       116 pp~~a~~G~rV~  127 (213)
                      ||.++++|+||.
T Consensus        94 ~~~~~~~G~~i~  105 (105)
T cd02800          94 PDEEVEPGSRVS  105 (105)
T ss_pred             CCCCCCCcCCcC
Confidence            999999999973

This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.

>COG0073 ARC1 EMAP domain [General function prediction only]

Probab=99.88  E-value=3.7e-22  Score=158.91  Aligned_cols=102  Identities=28%  Similarity=0.358  Sum_probs=85.3

Q ss_pred             CCceeeEEEEEEEEeecCCCCceEEEEEEcCCC-CeEEEEeCCCccccchhcCCCEEEEEec---ccceeecceecceEE
Q psy2025          23 LAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEG-QDRLIVSGLANYMTAFQLYNTSVVVVCN---LKPAKFRGILSQGMI   98 (213)
Q Consensus        23 ~~~~v~~~~ldirV~~hp~adkLyv~~VDiG~~-~~rqIVSGl~n~~~~eeL~G~kVvvv~N---LKprKmrGv~SeGML   98 (213)
                      ...++.+.+++  +.+||+||||++++||+|++ ++|||+||++|+|+.+++.++++.+++|   |||+||||+.|+|||
T Consensus        18 ~~~l~vg~V~~--~~~~p~adkL~~~~Vd~G~~~~~~qiv~G~~n~~~~~~vv~a~v~~v~~~~~ikp~klrG~~S~GMi   95 (123)
T COG0073          18 KVDLRVGKVVE--AEPHPNADKLLVLKVDLGDEKEPRQIVCGAPNFYAGEKLVGAKVGAVLNGGKLKPAKLRGVESEGML   95 (123)
T ss_pred             cCCeEEEEEEE--eEECCCCCeeEEEEEEcCCCCcEEEEEcCCccccCCceeeeeeEEEEeCCCcccceeecCcccceEE
Confidence            34455555553  45689999999999999975 4999999999999999999999999999   999999999999999


Q ss_pred             eeeecCCCCCCcEEEEcCCCCCCCCceE
Q psy2025          99 LCASETYNNVTRVEVVRPPENCTAGQRV  126 (213)
Q Consensus        99 Lsa~e~~~~~~~V~lL~pp~~a~~G~rV  126 (213)
                      ||+++.+.......|+.+|+++++|+++
T Consensus        96 cs~~e~~~~~~~~~il~~~~~~~~g~~~  123 (123)
T COG0073          96 LSAEELGLSDENVGILTLDEGVPPGTKV  123 (123)
T ss_pred             EEcccCCCccccceEEeCCCCCCCCCCC
Confidence            9999864321135578889999999864

>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain

Probab=99.86  E-value=2.3e-21  Score=157.28  Aligned_cols=87  Identities=39%  Similarity=0.638  Sum_probs=79.8

Q ss_pred             EeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEEc
Q psy2025          36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVR  115 (213)
Q Consensus        36 V~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL~  115 (213)
                      +.+||++++||+++||+|.+ .|||+||+..+|.+++++|++|++++||+|++|||+.|+|||||+++.+   +.+.++.
T Consensus        50 ve~hp~adkL~v~~Vd~G~~-~~qIvsg~~~~~~~~~l~G~~v~~~~nlkp~k~~Gv~S~GMlls~~~~~---~~~~l~~  125 (137)
T TIGR00399        50 AERVEKSDKLLKLKLDLGDE-KRQIVSGIAGYYTPEELVGKKVIVVANLKPAKLFGVKSEGMILAAEDDG---KVLFLLS  125 (137)
T ss_pred             EeecCCCCcceEEEEEeCCc-eEEEEeCcccCcCHhHcCCCEEEeeEEecCccCCCeEeccEEEEEecCC---CeEEEec
Confidence            45789999999999999974 6999999999999999999999999999999999999999999998742   3588999


Q ss_pred             CCCCCCCCceE
Q psy2025         116 PPENCTAGQRV  126 (213)
Q Consensus       116 pp~~a~~G~rV  126 (213)
                      ||.++++|++|
T Consensus       126 ~~~~~~~G~~i  136 (137)
T TIGR00399       126 PDQEAIAGERI  136 (137)
T ss_pred             CCCCCCCcCCc
Confidence            99999999997

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by this model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by this model.

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=99.79  E-value=3.1e-19  Score=174.07  Aligned_cols=96  Identities=34%  Similarity=0.517  Sum_probs=84.4

Q ss_pred             eEEEEEEEEe------ecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeee
Q psy2025          28 EDCDVDAQMH------TIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCA  101 (213)
Q Consensus        28 ~~~~ldirV~------~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa  101 (213)
                      ++..+|+||+      +||++++||+++||+|++++|||+||+++++++++++|++|++++||+|++|||+.|+|||||+
T Consensus       547 ~f~~~d~~vg~i~~~~~~p~adkL~~~~vd~G~~~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~S~gMl~s~  626 (648)
T PRK12267        547 DFDKVELRVAEVLEAEKVEKSDKLLKLQVDLGEEEPRQIVSGIAKFYPPEELVGKKVVVVANLKPAKLMGEESQGMILAA  626 (648)
T ss_pred             hhhhhceeEEEEEeeccCCCCCccceEEEEeCCCceEEEEeCCcccCCHhHhCCCeEEEEEeecccccCCcccceEEEEe
Confidence            4555666655      5799999999999999777899999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCcEEEEcCCCCCCCCceEE
Q psy2025         102 SETYNNVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus       102 ~e~~~~~~~V~lL~pp~~a~~G~rV~  127 (213)
                      ++ +   +.+.++.+|+++++|+++.
T Consensus       627 ~~-~---~~~~l~~~~~~~~~G~~~~  648 (648)
T PRK12267        627 ED-D---GKLTLLTVDKEVPNGSKVK  648 (648)
T ss_pred             cc-C---CeEEEEeCCCCCCCcCCCC
Confidence            88 2   3356888888999999873

>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain

Probab=99.76  E-value=2.3e-18  Score=131.82  Aligned_cols=92  Identities=24%  Similarity=0.324  Sum_probs=75.3

Q ss_pred             eEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEe---------cccceeecceecceEE
Q psy2025          28 EDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVC---------NLKPAKFRGILSQGMI   98 (213)
Q Consensus        28 ~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~---------NLKprKmrGv~SeGML   98 (213)
                      .+.+++  +.+||++++|++++||+|+++.+||+||+.++.     .|++|+++.         ||++++|||+.|+|||
T Consensus         3 vg~I~~--~~~hp~~~kL~~~~vd~g~~~~~~Iv~~~~n~~-----~g~~vvv~~~gs~l~~~~~i~~~~~~G~~S~GMl   75 (103)
T cd02796           3 VGKVLE--VEPHPNADKLNVCKVDIGENKPLQIVCGAPNVR-----AGDKVVVALPGAVLPGGLKIKKRKLRGVESEGML   75 (103)
T ss_pred             EEEEEE--EEecCCCCceEEEEEEeCCCcEEEEEcCccHhh-----cCCEEEEEecCCCcCCCceEcceeeCCcccchhC
Confidence            455554  477999999999999999767999999999994     899999987         8999999999999999


Q ss_pred             eeeecCCCCCCcEEEEcCCCCCCCCceE
Q psy2025          99 LCASETYNNVTRVEVVRPPENCTAGQRV  126 (213)
Q Consensus        99 Lsa~e~~~~~~~V~lL~pp~~a~~G~rV  126 (213)
                      ||+++..-..+...++.+|+++++|+++
T Consensus        76 ~s~~elg~~~~~~gi~~l~~~~~~G~~~  103 (103)
T cd02796          76 CSAKELGLGEDSDGIIELPEDAPVGTDI  103 (103)
T ss_pred             cchhHcCCCCCCCeEEECCCCCCCCCCC
Confidence            9998841110223367888889999864

PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=99.75  E-value=3.6e-18  Score=167.60  Aligned_cols=94  Identities=32%  Similarity=0.462  Sum_probs=82.1

Q ss_pred             EEEEEEEE------eecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceee-cceecceEEeee
Q psy2025          29 DCDVDAQM------HTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKF-RGILSQGMILCA  101 (213)
Q Consensus        29 ~~~ldirV------~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKm-rGv~SeGMLLsa  101 (213)
                      +..+|+||      .+||++++||+++||+|++ +||||||++++|++++|+|++|++++||||++| +|+ |+|||||+
T Consensus       573 f~~~di~vg~I~~~~~~p~~~~l~~~~vd~G~~-~~~iv~g~~~~~~~~~l~G~~v~~~~nlkp~~~~~Gv-S~gMl~~~  650 (673)
T PRK00133        573 FAKVDLRVAKIVEAEKVEGADKLLKLTLDLGEE-TRQVFSGIKSAYDPEELVGKLVVMVANLAPRKMKFGV-SEGMVLAA  650 (673)
T ss_pred             HhhhhcceeeeEeeecCCCCCccceeeEecCCc-eeEEEcCccccCCHHHHhcCeeEEEEeeccccccCCc-cceeEEEe
Confidence            44556554      4679999999999999985 899999999999999999999999999999999 999 99999999


Q ss_pred             ecCCCCCCcEEEEcCCCCCCCCceEE
Q psy2025         102 SETYNNVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus       102 ~e~~~~~~~V~lL~pp~~a~~G~rV~  127 (213)
                      ++.+   +++.++.++.++++|++|.
T Consensus       651 ~~~~---~~i~~l~~~~~~~~G~~~~  673 (673)
T PRK00133        651 GPGG---GDLFLLEPDEGAKPGMRVK  673 (673)
T ss_pred             ecCC---CcEEEecCCCCCCCCCcCC
Confidence            8532   4688888877899999873

>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial

Probab=99.55  E-value=1.4e-14  Score=144.90  Aligned_cols=101  Identities=22%  Similarity=0.285  Sum_probs=82.3

Q ss_pred             cCCCcCCceeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEE---------eccccee
Q psy2025          18 PLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVV---------CNLKPAK   88 (213)
Q Consensus        18 ~~~~~~~~~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv---------~NLKprK   88 (213)
                      +.++.+.+++.+.++++  .+||++++|++|+||+|+++.+|||||+.|..     .|++|+++         .+|++++
T Consensus        38 ~~~~~~~~~~vg~i~~~--~~hp~~~~L~~~~vd~g~~~~~~Iv~ga~n~~-----~g~~V~va~~Ga~l~~~~~i~~~~  110 (798)
T TIGR00472        38 PFSKPLKGVVVGKVLEV--EPHPNADKLKVCKVDIGEKEMLQIVCGAPNVE-----AGKKVAVALPGAKLPNGLKIKKSK  110 (798)
T ss_pred             ecccCcCCEEEEEEEEE--EecCCCCcEEEEEEEcCCCceEEEEeCCcccc-----CCCEEEEEccCCCccCCceEeeee
Confidence            34445678889999955  67999999999999999767899999999985     89999997         4699999


Q ss_pred             ecceecceEEeeeecCC--CCCCcEEEEcCCCCCCCCceEE
Q psy2025          89 FRGILSQGMILCASETY--NNVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus        89 mrGv~SeGMLLsa~e~~--~~~~~V~lL~pp~~a~~G~rV~  127 (213)
                      |||+.|+||+||+++.+  +...++  +.+|+++++|+++.
T Consensus       111 ~~Gv~S~GMlcs~~elg~~~~~~gi--~~l~~~~~~G~~~~  149 (798)
T TIGR00472       111 LRGVESEGMLCSEDELGLDEKSDGI--IVLDEDAPLGTDIA  149 (798)
T ss_pred             cCCeeechhcccHhHcCCCCCCCCE--EEcCCCCCCCccHH
Confidence            99999999999999842  211455  44567889998773

Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.

>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed

Probab=99.49  E-value=8.8e-14  Score=139.08  Aligned_cols=98  Identities=24%  Similarity=0.330  Sum_probs=79.7

Q ss_pred             CCCcCCceeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEE---------ecccceee
Q psy2025          19 LGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVV---------CNLKPAKF   89 (213)
Q Consensus        19 ~~~~~~~~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv---------~NLKprKm   89 (213)
                      .++.+.+++++.++++  .+||++|+|++|+||+|+ +.+||+||+.|+.     .|.+|+++         .+|++++|
T Consensus        38 ~~~~~~~i~vg~i~~~--~~hp~~~~L~v~~v~~g~-~~~~iv~ga~n~~-----~g~~v~~a~~G~~l~~~~~i~~~~~  109 (791)
T PRK00629         38 VAAGLSGVVVGKVLEC--EKHPNADKLRVCQVDVGE-EPLQIVCGAPNVR-----AGDKVPVALPGAVLPGGFKIKKAKL  109 (791)
T ss_pred             cccCCCCEEEEEEEEE--EecCCCCeEEEEEEEcCC-eEEEEEeCCcccc-----CCCEEEEEccCCCccCCceEeeeec
Confidence            3445788999999966  669999999999999997 5699999999985     67777773         35999999


Q ss_pred             cceecceEEeeeecC---CCCCCcEEEEcCCCCCCCCceEE
Q psy2025          90 RGILSQGMILCASET---YNNVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus        90 rGv~SeGMLLsa~e~---~~~~~~V~lL~pp~~a~~G~rV~  127 (213)
                      ||+.|+||+||++|.   +++ +++  +..|+++++|+++.
T Consensus       110 ~Gv~S~GMlcs~~ELGl~~~~-~GI--~~L~~~~~~G~~~~  147 (791)
T PRK00629        110 RGVESEGMLCSASELGLSDDH-DGI--IELPEDAPVGTDAR  147 (791)
T ss_pred             CCeEEchhcccHhHcCCCcCC-CCe--EECCCCCCCCccHH
Confidence            999999999999984   233 575  44567788998874

>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family

Probab=98.79  E-value=1.7e-08  Score=93.17  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             eeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEE------e------------------
Q psy2025          27 VEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVV------C------------------   82 (213)
Q Consensus        27 v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv------~------------------   82 (213)
                      ++..++  .+.+||+||+|.+++||.     .|||||+.|+.     .|.+|+++      .                  
T Consensus         4 vv~kV~--~i~php~Ad~L~v~~Vd~-----~~vV~ga~n~~-----~Gd~Vv~a~~gs~Lp~~~~~~~~~~~~~~~~~g   71 (341)
T TIGR02306         4 VMREIA--DLQPHPNADALELATVGG-----WEVVVKKGEYR-----VGSDCVYFPEDSVLPTDAGLFRFLETRAKILDG   71 (341)
T ss_pred             EEEEEE--EeeecCCCCceEEEEEeC-----EEEEcCCCcCC-----CCCEEEEECCCCCCCCCCCcchhhccccccccc
Confidence            345555  466799999999999997     99999999986     56666553      1                  


Q ss_pred             ----cccceeecceecceEEeeeecC
Q psy2025          83 ----NLKPAKFRGILSQGMILCASET  104 (213)
Q Consensus        83 ----NLKprKmrGv~SeGMLLsa~e~  104 (213)
                          .|+.++|||+.|+||+|+.++.
T Consensus        72 ~~~~~Ik~~klRG~~SqGMlcs~~~~   97 (341)
T TIGR02306        72 KMRARVKTVRLRGEISQGIALPTGAL   97 (341)
T ss_pred             cccceEeEEEeccEEEccEEechhhc
Confidence                5788899999999999998873

The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.

>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]

Probab=98.75  E-value=1.4e-08  Score=86.86  Aligned_cols=62  Identities=23%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             EeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecC
Q psy2025          36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASET  104 (213)
Q Consensus        36 V~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~  104 (213)
                      +++||++|+||+|.||+|+ ..++||+..-.+.     +|.+++|+ -|.||.|.|+.|+||+|.+.+-
T Consensus       130 v~~hp~aD~L~v~vvn~G~-r~~tVVTN~~~vr-----eg~~vaVA-lLPPr~F~gvvSeGMFlg~~d~  191 (219)
T COG2517         130 VGKHPNADKLLVTVVNIGG-RAVTVVTNDLDVR-----EGDRVAVA-LLPPRNFFGVVSEGMFLGAKDV  191 (219)
T ss_pred             cccCCCCCceEEEEEecCC-eEEEEEecccccc-----cCCEEEEE-ecChhHhccccccceeeccccc
Confidence            5679999999999999997 4699999998885     89998776 5999999999999999998663

>PHA02142 putative RNA ligase

Probab=84.46  E-value=2.8  Score=39.66  Aligned_cols=21  Identities=38%  Similarity=0.605  Sum_probs=17.7

Q ss_pred             cccceeecceecceEEeeeec
Q psy2025          83 NLKPAKFRGILSQGMILCASE  103 (213)
Q Consensus        83 NLKprKmrGv~SeGMLLsa~e  103 (213)
                      -|+..|+||..||||++-.++
T Consensus        83 Ri~t~klRG~iSQGl~lpl~~  103 (366)
T PHA02142         83 RIKTIKLRGQISQGIALPTGA  103 (366)
T ss_pred             eEEEEEEeeEEeeeEEecccc
Confidence            588899999999999987433

>PTZ00385 lysyl-tRNA synthetase; Provisional

Probab=84.36  E-value=0.17  Score=51.02  Aligned_cols=49  Identities=14%  Similarity=0.222  Sum_probs=42.9

Q ss_pred             eecCC-CCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEeccccee
Q psy2025          37 HTIER-QKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAK   88 (213)
Q Consensus        37 ~~hp~-adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprK   88 (213)
                      ..+|. +++|.-.+.|.|.+..|+|.||+..||.  +|.|+.++.+|| .||.
T Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~-~pr~  659 (659)
T PTZ00385        610 ANVRELRRVIMELGQRGGENGLPTAGGRLSEWRI--TLTFAIIRFICG-TPRR  659 (659)
T ss_pred             hhchHHHHHHhceecccCCCCccchhHHHHHHHH--HHhcceeEEEeC-CCCC
Confidence            34455 7789999999999999999999999997  799999999999 8873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	213
1e7z_A	174	Crystal Structure Of The Emap2RNA BINDING DOMAIN OF		1e-21
1euj_A	166	A Novel Anti-Tumor Cytokine Contains A Rna-Binding		1e-21
1fl0_A	171	Crystal Structure Of The Emap2RNA-Binding Domain Of		1e-21
1ntg_A	172	Crystal Structure Of The Emap Ii-Like Cytokine Rele		6e-20
1pyb_A	111	Crystal Structure Of Aquifex Aeolicus Trbp111: A St		2e-09
2cwp_A	112	Crystal Structure Of Metrs Related Protein From Pyr		6e-08
1mkh_A	107	C-Terminal Domain Of Methionyl-Trna Synthetase From		8e-08
1rqg_A	722	Methionyl-Trna Synthetase From Pyrococcus Abyssi Le		2e-07
3ers_X	118	Crystal Structure Of E. Coli Trbp111 Length = 118		3e-05

>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 174

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
            + +GE   R +VSGL N++   Q+ N  V+++CNLKPAK RG+LSQ M++CAS      
Sbjct: 32  EVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP---- 87
Query: 109 TRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
            ++E++ PP     G R+      G PDK L+PK+ +W +IQ DL ++D     +KG   
Sbjct: 88  EKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPF 147
Query: 169 ET 170
           E 
Sbjct: 148 EV 149

>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif Present In Aminoacyl-Trna Synthetases Length = 166

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 50  LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
           + +GE   R +VSGL N++   Q+ N  V+++CNLKPAK RG+LSQ M++CAS       
Sbjct: 33  VDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP----E 88
Query: 110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
           ++E++ PP     G R+      G PDK L+PK+ +W +IQ DL ++D     +KG   E
Sbjct: 89  KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFE 148
Query: 170 T 170
Sbjct: 149 V 149

>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 171

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 49  RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
            + +GE   R +VSGL N++   Q+ N  V+++CNLKPAK RG+LSQ M++CAS      
Sbjct: 29  EVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP---- 84
Query: 109 TRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
            ++E++ PP     G R+      G PDK L+PK+ +W +IQ DL ++D     +KG   
Sbjct: 85  EKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPF 144
Query: 169 ET 170
           E 
Sbjct: 145 EV 146

>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released From Human Tyrosyl-Trna Synthetase Length = 172

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 10/160 (6%)
Query: 34  AQMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFR 90
            ++ T+E+  +   L   ++ +GE + R +VSGL  ++   +L +  VVV+CNLKP K R
Sbjct: 15  GKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMR 74
Query: 91  GILSQGMILCAS-ETYNNVTRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPK 148
           G+ SQGM+LCAS E  N   +VE + PP     G+ VF+     G PD+ L PK+ V+ K
Sbjct: 75  GVESQGMLLCASIEGINR--QVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEK 132
Query: 149 IQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHI 188
           +Q D K  +    +WK     T   +  ++  KS   G+I
Sbjct: 133 LQADFKISEECIAQWKQTNFMT---KLGSISCKSLKGGNI 169

>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture- Specific Trna Binding Protein Length = 111

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
           KL L +G+ ++R +V+G+A Y T  +L    +V+V NLKP K  GI SQGMIL AS+  N
Sbjct: 36  KLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAASDGEN 94
Query: 107 NVTRVEVVRPPENCTAGQRV 126
               + V+ P  +   G ++
Sbjct: 95  ----LSVIVPDRDVKEGAKL 110

>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus Horikoshii Length = 112

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 35  QMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
           +   I+R K+  KL +  G  ++R IV+G+A+ +   +L     + V NLKP KF G+ S
Sbjct: 24  KAEKIKRTKKLIKLIVDFG-NEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVES 82
Query: 95  QGMILCASETYNNVTRVEVVRPPENCTAGQRVF 127
           QGM++ A ET +   +V ++  PE    G RV+
Sbjct: 83  QGMLILA-ETEDG--KVYLIPVPEEVPVGARVW 112

>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 107

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 58  RLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPP 117
           R +V+GL  Y    +L N  VVVV NL+P K RGI SQGM+L A +      RV ++ P 
Sbjct: 42  RTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAADDG----ERVALLMPD 97
Query: 118 ENCTAGQRV 126
           +    G +V
Sbjct: 98  KEVKLGAKV 106

>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 58  RLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPP 117
           R +V+GL  Y    +L N  VVVV NL+P K RGI SQGM+L A    ++  RV ++ P 
Sbjct: 657 RTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAA----DDGERVALLMPD 712
Query: 118 ENCTAGQRV 126
           +    G +V
Sbjct: 713 KEVKLGAKV 721

>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111 Length = 118

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 50  LQIGEGQDRL-IVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
           +Q+  GQ  L  V+ L  Y +  +L   +VVV+CNL+ AK RG  S+ M+LCA ET +  
Sbjct: 34  VQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCA-ETDDGS 92
Query: 109 TRVEVVRPPENCTAGQRVFI 128
             V ++ P     AG RV +
Sbjct: 93  ESV-LLTPERMMPAGVRVVL 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	213
1fl0_A	171	Endothelial-monocyte activating polypeptide II; RN	3e-41
1ntg_A	172	Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas	7e-41
1pxf_A	111	Hypothetical protein YGJH; oligonucleotide-oligosa	5e-23
1mkh_A	107	Metrs;, C-terminal domain of methionyl-tRNA synthe	1e-21
2cwp_A	112	Metrs related protein; structural GEN riken struct	5e-20
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	8e-20
1pyb_A	111	Methionyl-tRNA synthetase beta subunit; oligonucle	9e-20
1gd7_A	109	CSAA protein; oligonucleotide-binding fold, functi	2e-15
3g48_A	112	Chaperone CSAA; structural genomics, niaid structu	2e-14
2q2h_A	131	AGR_C_4014P, secretion chaperone, phage-display de	4e-13
2q2i_A	116	AGR_C_4014P, secretion chaperone; beta barrel, OB	5e-13
2nzh_A	113	Protein CSAA; beta barrel, oligonucleotide/oligosa	3e-12
2e8g_A	241	Hypothetical protein PH0536; oligonucleotide/oligo	2e-08

>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Length = 171

 Score =  136 bits (345), Expect = 3e-41
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 6/147 (4%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
              + +GE   R +VSGL N++   Q+ N  V+++CNLKPAK RG+LSQ M++CAS    
Sbjct: 27  VEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCAS---- 82

Query: 107 NVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGH 166
           +  ++E++ PP     G R+      G PDK L+PK+ +W +IQ DL ++D     +KG 
Sbjct: 83  SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGV 142

Query: 167 RLETVNAQRAAVDLKSDDNGHIRWKGH 193
             E           ++  N  I+ + H
Sbjct: 143 PFEVKGK--GVCRAQTMSNSGIKLEHH 167

>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Length = 172

 Score =  136 bits (343), Expect = 7e-41
 Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 2/125 (1%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
             ++ +GE + R +VSGL  ++   +L +  VVV+CNLKP K RG+ SQGM+LCAS    
Sbjct: 31  VEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCAS-IEG 89

Query: 107 NVTRVEVVRPPENCTAGQRVFIHNRT-GIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKG 165
              +VE + PP     G+ VF+     G PD+ L PK+ V+ K+Q D K  +    +WK 
Sbjct: 90  INRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQ 149

Query: 166 HRLET 170
               T
Sbjct: 150 TNFMT 154

>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} SCOP: b.40.4.4 PDB: 3ers_X Length = 111

 Score = 88.5 bits (220), Expect = 5e-23
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
            +++ +G+      V+ L  Y +  +L   +VVV+CNL+ AK RG  S+ M+LCA    +
Sbjct: 33  IVQVDVGQKT-LQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAET--D 89

Query: 107 NVTRVEVVRPPENCTAGQRV 126
           + +   ++ P     AG RV
Sbjct: 90  DGSESVLLTPERMMPAGVRV 109

>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Length = 107

 Score = 84.2 bits (209), Expect = 1e-21
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 5/80 (6%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
            +++ +G+   R +V+GL  Y    +L N  VVVV NL+P K RGI SQGM+L A     
Sbjct: 32  VVKVDLGDEV-RTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAAD---- 86

Query: 107 NVTRVEVVRPPENCTAGQRV 126
           +  RV ++ P +    G +V
Sbjct: 87  DGERVALLMPDKEVKLGAKV 106

>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} Length = 112

 Score = 80.3 bits (199), Expect = 5e-20
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
           KL +  G  + R IV+G+A+ +   +L     + V NLKP KF G+ SQGM++ A     
Sbjct: 36  KLIVDFGNEE-RTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAE---T 91

Query: 107 NVTRVEVVRPPENCTAGQRVF 127
              +V ++  PE    G RV+
Sbjct: 92  EDGKVYLIPVPEEVPVGARVW 112

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722

 Score = 85.9 bits (213), Expect = 8e-20
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 39  IERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMI 98
                +   +++ +G+   R +V+GL  Y    +L N  VVVV NL+P K RGI SQGM+
Sbjct: 639 HPNADKLYVVKVDLGDEV-RTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGML 697

Query: 99  LCASETYNNVTRVEVVRPPENCTAGQRV 126
           L A +      RV ++ P +    G +V
Sbjct: 698 LAADDG----ERVALLMPDKEVKLGAKV 721

>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Length = 111

 Score = 79.9 bits (198), Expect = 9e-20
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
           KL L +G+ + R +V+G+A Y T  +L    +V+V NLKP K  GI SQGMIL AS    
Sbjct: 36  KLTLSLGDEE-RTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAAS---- 90

Query: 107 NVTRVEVVRPPENCTAGQRV 126
           +   + V+ P  +   G ++
Sbjct: 91  DGENLSVIVPDRDVKEGAKL 110

>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 Length = 109

 Score = 68.3 bits (168), Expect = 2e-15
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
           KL + +G    +   + +        L    VV   NL   +  G LS+ ++L   +   
Sbjct: 32  KLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAG 91

Query: 107 NVTRVEVVRPPENCTAGQRVF 127
            V    ++ P      G +VF
Sbjct: 92  RVV---LLAPDREVPLGGKVF 109

>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} Length = 112

 Score = 66.0 bits (162), Expect = 2e-14
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
           +L +  GE   +   + +        L    +V V N  P +  G  S+ ++L       
Sbjct: 35  RLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPPKRVAGFKSEVLVLGGVPEAG 94

Query: 107 NVTRVEVVRPPENCTAGQRV 126
           +V    +++P      G ++
Sbjct: 95  DVV---LLQPNMELPNGTKI 111

>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str} Length = 131

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 47  KLRLQIGEGQD-RLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETY 105
           K+++  G     +   + +  + T   L    V+ V N  P +     S+ + L  ++  
Sbjct: 53  KVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGFADAN 112

Query: 106 NNVTRVEVVRPPENCTAGQRV 126
            ++    +         G+++
Sbjct: 113 GDIV---LAAVERPVPNGEKM 130

>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str} Length = 116

 Score = 62.2 bits (152), Expect = 5e-13
 Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 44  EEAK---LRLQI---GEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGM 97
            EA+   ++++I    E   +   + +  + T   L    V+ V N  P +     S+ +
Sbjct: 30  PEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVL 89

Query: 98  ILCASETYNNVTRVEVVRPPENCTAGQRV 126
            L  ++   ++    +         G+++
Sbjct: 90  TLGFADANGDIV---LAAVERPVPNGEKM 115

>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A Length = 113

 Score = 60.2 bits (147), Expect = 3e-12
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 47  KLRLQIGEGQD-RLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETY 105
           KL +  G     +   + +        L N  V+ V N  P +  G  S+ ++L      
Sbjct: 35  KLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAGFKSEVLVLGGIPGQ 94

Query: 106 NNVTRVEVVRPPENCTAGQRV 126
            +V    +++P +    G ++
Sbjct: 95  GDVV---LLQPDQPVPNGTKI 112

>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Length = 241

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 47  KLRL-QIGEGQDRL-IVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASE 103
           +L +  +  G+  + +V+              + V V  L P  F GI+S+GM L A E
Sbjct: 154 RLLVTNVNIGERAVTVVTNDLTVKEG------NRVAVALLPPRNFFGIVSEGMFLGAGE 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
1ntg_A	172	Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas	100.0
1fl0_A	171	Endothelial-monocyte activating polypeptide II; RN	100.0
3ers_X	118	TRNA-binding protein YGJH; oligonucleotide-oligosa	99.96
1gd7_A	109	CSAA protein; oligonucleotide-binding fold, functi	99.95
2cwp_A	112	Metrs related protein; structural GEN riken struct	99.95
2nzh_A	113	Protein CSAA; beta barrel, oligonucleotide/oligosa	99.95
2q2i_A	116	AGR_C_4014P, secretion chaperone; beta barrel, OB	99.94
1mkh_A	107	Metrs;, C-terminal domain of methionyl-tRNA synthe	99.94
2q2h_A	131	AGR_C_4014P, secretion chaperone, phage-display de	99.94
3g48_A	112	Chaperone CSAA; structural genomics, niaid structu	99.94
1pyb_A	111	Methionyl-tRNA synthetase beta subunit; oligonucle	99.94
1pxf_A	111	Hypothetical protein YGJH; oligonucleotide-oligosa	99.91
3bu2_A	199	Putative tRNA-binding protein; structural genomics	99.86
2e8g_A	241	Hypothetical protein PH0536; oligonucleotide/oligo	99.85
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	99.81
3pco_B	795	Phenylalanyl-tRNA synthetase, beta chain; aminoacy	99.75
1b7y_B	785	Phers, protein (phenylalanyl-tRNA synthetase); enz	99.69
2rhq_B	795	Phenylalanyl-tRNA synthetase beta chain; heterotet	99.61

>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4

Probab=100.00  E-value=1.3e-46  Score=314.05  Aligned_cols=159  Identities=33%  Similarity=0.537  Sum_probs=143.6

Q ss_pred             eeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCC
Q psy2025          26 HVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETY  105 (213)
Q Consensus        26 ~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~  105 (213)
                      ++++.+++  +++||+|||||+++||+|++++|||+||++|+|++|+|+|++|++++||||+||||++|+||+||+..++
T Consensus        12 irVG~I~~--~e~hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~eel~G~~Vvvl~nlkp~klrGv~S~GMvLcs~~e~   89 (172)
T 1ntg_A           12 IRVGKIIT--VEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEG   89 (172)
T ss_dssp             EEEEEEEE--EEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEECEEEEES
T ss_pred             EEEEEEEE--EEECCCCCccEEEEEEeCCCcEEEEEECCCCCCChHHHCCCEEEEEEeEcceeecceecCCEEeEecccc
Confidence            33555553  4569999999999999998778999999999999999999999999999999999999999977766543


Q ss_pred             CCCCcEEEEcCCCCCCCCceEEeCCC-CCCCCCCCCCCccchhhhcCceEEcCCceEEECCeEEEEcCeeEEeeecCCCC
Q psy2025         106 NNVTRVEVVRPPENCTAGQRVFIHNR-TGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDD  184 (213)
Q Consensus       106 ~~~~~V~lL~pp~~a~~G~rV~~~g~-~~~P~~~l~~Kkk~we~i~~~L~t~~~g~a~ykg~~l~t~~g~~~~~~l~~~~  184 (213)
                      ++ ++++|+.+|+++++|+++.|+|+ +++|++++++|||+||++|++|+|+++|+|+|+|.+|+|++|+|++++|+   
T Consensus        90 ~~-~~v~il~~~~~~~~G~~v~~~g~~~~~p~~~l~~kkk~~e~~~~~l~t~~~~~a~~k~~~~~~~~g~~~~~~l~---  165 (172)
T 1ntg_A           90 IN-RQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLK---  165 (172)
T ss_dssp             SS-EEEEECBCCBTCCTTCEEEETTCSSCCCCSSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEETTEECBCSSCT---
T ss_pred             cC-CCeEEEECCCCCCCCCEEEeCCcCCCCCccccCcchhhHHhhCCCcEECCCCEEEECCEEEEeCCCCEEeeecC---
Confidence            34 57889999999999999999999 69999999999999999999999999999999999999999999999977   


Q ss_pred             CceEEe
Q psy2025         185 NGHIRW  190 (213)
Q Consensus       185 ~g~i~~  190 (213)
                      ||.|+.
T Consensus       166 ~~~i~~  171 (172)
T 1ntg_A          166 GGNISL  171 (172)
T ss_dssp             TCEEEC
T ss_pred             CCEEEe
Confidence            888864

>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A

Probab=100.00  E-value=6e-44  Score=297.82  Aligned_cols=157  Identities=34%  Similarity=0.581  Sum_probs=139.5

Q ss_pred             eEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCC
Q psy2025          28 EDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNN  107 (213)
Q Consensus        28 ~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~  107 (213)
                      ++.+++  +++||+|||||+++||+|++++|||+||++|+|+++++.|+++++++||||+||||++|+||+||+.+.   
T Consensus        10 VG~I~~--~e~hP~AdkL~v~~VD~G~~~~rqIV~G~~n~v~~a~lggk~v~~~~nlkp~klrGv~SeGMvLcs~~~---   84 (171)
T 1fl0_A           10 IGCIIT--ARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP---   84 (171)
T ss_dssp             EEEEEE--EEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECEEEET---
T ss_pred             EEEEEE--EEECCCCCccEEEEEEcCCCcEEEEEECCCceEcchhcCCEEEcCceEEeeEEEccEeccCEEEEEecC---
Confidence            455553  456899999999999999877899999999999999999999988999999999999999998877663   


Q ss_pred             CCcEEEEcCCCCCCCCceEEeCCCCCCCCCCCCCCccchhhhcCceEEcCCceEEECCeEEEEcC-eeEEeeecCCCCCc
Q psy2025         108 VTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVN-AQRAAVDLKSDDNG  186 (213)
Q Consensus       108 ~~~V~lL~pp~~a~~G~rV~~~g~~~~P~~~l~~Kkk~we~i~~~L~t~~~g~a~ykg~~l~t~~-g~~~~~~l~~~~~g  186 (213)
                       +++.++.+|+++++|+++.|+||+++|++++++|||+||++|++|+|+++++|+|+|.||++.+ |+|+++||+   |+
T Consensus        85 -~~~~il~~~~~~~~G~~v~~~g~~~~p~~~l~~kkk~~e~~~~~l~t~~~~va~~k~~~~~~~~~g~~~~~~l~---~~  160 (171)
T 1fl0_A           85 -EKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMS---NS  160 (171)
T ss_dssp             -TEEEECBCCTTCCTTCBCCCTTSCCCCCSSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTTEECBCSSCC---SC
T ss_pred             -CCEEEEECCCCCCCCCEEEeCCCCCCCccccCchhhhHHhhCCCcEECCCeEEEECCEEEEECCCccEEeeecC---CC
Confidence             3578899999999999999999999999999999999999999999999999999999998765 999999977   77


Q ss_pred             eEEeece
Q psy2025         187 HIRWKGH  193 (213)
Q Consensus       187 ~i~~~~~  193 (213)
                      .|...-|
T Consensus       161 ~~~~~~~  167 (171)
T 1fl0_A          161 GIKLEHH  167 (171)
T ss_dssp             EECC---
T ss_pred             eEeeeec
Confidence            7765443

>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4

Probab=99.95  E-value=5.5e-28  Score=188.11  Aligned_cols=95  Identities=20%  Similarity=0.288  Sum_probs=83.9

Q ss_pred             eEEEEEEEEeecCCCCce-EEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCC
Q psy2025          28 EDCDVDAQMHTIERQKEE-AKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN  106 (213)
Q Consensus        28 ~~~~ldirV~~hp~adkL-yv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~  106 (213)
                      ++.+++  +++||+|||| |+++||+|++++|||+||++|+|++++|+|++|++++||||+||||++|+||+||+++. +
T Consensus        14 VG~I~~--~e~hp~adkL~~~~~Vd~G~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S~GMl~sa~~~-~   90 (109)
T 1gd7_A           14 VGRVLR--AEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDE-A   90 (109)
T ss_dssp             EEEEEE--EEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECSSCCEEETTEEECSEECEEECT-T
T ss_pred             EEEEEE--EEECCCCccccEEEEEEcCCCcEEEEEECCccccChhhcCCCEEEeeEecCceEeccEeecCEEEEeecC-C
Confidence            444443  4569999999 99999999766899999999999999999999999999999999999999999999853 2


Q ss_pred             CCCcEEEEcCCCCCCCCceEE
Q psy2025         107 NVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus       107 ~~~~V~lL~pp~~a~~G~rV~  127 (213)
                        +++.+|.||+++++|+++.
T Consensus        91 --~~i~~l~~~~~~~~G~~i~  109 (109)
T 1gd7_A           91 --GRVVLLAPDREVPLGGKVF  109 (109)
T ss_dssp             --SCEEEEEESSCCCTTCBCC
T ss_pred             --CcEEEEeCCCCCCCCCCCC
Confidence              4688999999999999873

>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}

Probab=99.95  E-value=3.1e-27  Score=184.65  Aligned_cols=94  Identities=33%  Similarity=0.539  Sum_probs=83.0

Q ss_pred             eEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCC
Q psy2025          28 EDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNN  107 (213)
Q Consensus        28 ~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~  107 (213)
                      ++.+++  +++||+|||||+++||+|+ ++|||+||++|+|++++|+|++|++++||||+||||++|+|||||+++. + 
T Consensus        19 VG~I~~--~e~hp~adkL~~~~VD~G~-~~rqIV~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S~GMl~sa~~~-~-   93 (112)
T 2cwp_A           19 VGLVKK--AEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETE-D-   93 (112)
T ss_dssp             EEEEEE--EEECTTCSSCEEEEEECSS-CEEEEEECCTTTSCGGGTTTCEEEEECSSCCEEETTEEECSEECCEECT-T-
T ss_pred             EEEEEE--EEECCCCCccEEEEEEeCC-eEEEEEECCccccChhhcCCCEEECeEEEccceeCCEecccEEEEeecC-C-
Confidence            444443  4569999999999999998 7899999999999999999999999999999999999999999999853 2 


Q ss_pred             CCcEEEEcCCCCCCCCceEE
Q psy2025         108 VTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus       108 ~~~V~lL~pp~~a~~G~rV~  127 (213)
                       +.+.++.+|+++++|+++.
T Consensus        94 -~~~~il~~~~~~~~G~~i~  112 (112)
T 2cwp_A           94 -GKVYLIPVPEEVPVGARVW  112 (112)
T ss_dssp             -SCEECCBCCTTSCTTCEEC
T ss_pred             -CcEEEEECCCCCCCCCCCC
Confidence             3567899999999999973

>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A

Probab=99.95  E-value=1e-27  Score=187.73  Aligned_cols=96  Identities=17%  Similarity=0.240  Sum_probs=84.5

Q ss_pred             eeEEEEEEEEeecCCCCce-EEEEEEcCCC-CeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecC
Q psy2025          27 VEDCDVDAQMHTIERQKEE-AKLRLQIGEG-QDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASET  104 (213)
Q Consensus        27 v~~~~ldirV~~hp~adkL-yv~~VDiG~~-~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~  104 (213)
                      +++.+++  +++||+|||| |+++||+|++ ++|||+||++|+|++++|+|++|++++||||+||||++|+|||||+++.
T Consensus        16 rVG~I~~--~e~hp~adkL~~~~~Vd~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv~S~GMl~sa~~~   93 (113)
T 2nzh_A           16 RTGTIVK--AEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAGFKSEVLVLGGIPG   93 (113)
T ss_dssp             EEEEEEE--EEEETTSSSCEEEEEEECHHHHCEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEETTEEECSEECEEEEE
T ss_pred             EEEEEEE--EEECCCCCcccEEEEEEeCCCCcEEEEEECCCcccCHHHhCCCEEEeeEEEcceEECCEEeCCEEEEeecC
Confidence            3455553  4568999999 9999999974 6899999999999999999999999999999999999999999999873


Q ss_pred             CCCCCcEEEEcCCCCCCCCceEE
Q psy2025         105 YNNVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus       105 ~~~~~~V~lL~pp~~a~~G~rV~  127 (213)
                       +  +++.++.+|+++++|+++.
T Consensus        94 -~--~~i~ll~~~~~~~~G~~i~  113 (113)
T 2nzh_A           94 -Q--GDVVLLQPDQPVPNGTKIG  113 (113)
T ss_dssp             -T--TEEEEEEESSCCCTTCEEC
T ss_pred             -C--CCEEEEECCCCCCCCCCCC
Confidence             2  5688899999999999974

>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1.7e-27  Score=187.17  Aligned_cols=96  Identities=14%  Similarity=0.167  Sum_probs=84.1

Q ss_pred             eeEEEEEEEEeecCCCCce-EEEEEEcCCC-CeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecC
Q psy2025          27 VEDCDVDAQMHTIERQKEE-AKLRLQIGEG-QDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASET  104 (213)
Q Consensus        27 v~~~~ldirV~~hp~adkL-yv~~VDiG~~-~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~  104 (213)
                      +++.+++  +++||+|||| |+++||+|++ ++|||+||++|+|++++|+|++|++++||||+||||++|+|||||+++.
T Consensus        19 rVG~I~~--~e~hp~adkL~~~~~VD~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv~S~GMl~sa~~~   96 (116)
T 2q2i_A           19 RVGTIVE--AVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGFADA   96 (116)
T ss_dssp             EEEEEEE--EEECTTSSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTEEECCEECEEECT
T ss_pred             EEEEEEE--EEECCCCCCccEEEEEEeCCCCcEEEEEECCcCccChhhcCCCEEECceEEcceEECCEEeCCEEEEeecC
Confidence            3455553  4568999999 9999999974 6899999999999999999999999999999999999999999999853


Q ss_pred             CCCCCcEEEEcCCCCCCCCceEE
Q psy2025         105 YNNVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus       105 ~~~~~~V~lL~pp~~a~~G~rV~  127 (213)
                        + +++.+|.||+++++|+++.
T Consensus        97 --~-~~i~ll~p~~~~~~G~~i~  116 (116)
T 2q2i_A           97 --N-GDIVLAAVERPVPNGEKMC  116 (116)
T ss_dssp             --T-SCEEEEEESSCCCTTCBCC
T ss_pred             --C-CcEEEEeCCCCCCCCCCCC
Confidence              2 5688999999999999873

>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4

Probab=99.94  E-value=2.8e-27  Score=183.48  Aligned_cols=93  Identities=32%  Similarity=0.524  Sum_probs=82.0

Q ss_pred             eEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCC
Q psy2025          28 EDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNN  107 (213)
Q Consensus        28 ~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~  107 (213)
                      ++.+++  +++||+|||||+++||+|+ ++|||+||++|+|.+++|+|++|++++||||+||||++|+||+||+++   +
T Consensus        15 VG~I~~--~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~S~GMl~s~~~---~   88 (107)
T 1mkh_A           15 VGKIIE--VKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAADD---G   88 (107)
T ss_dssp             EEEEEE--EEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEECCCBCEEEC---S
T ss_pred             EEEEEE--EEECCCCCccEEEEEEeCC-eEEEEEeCCccccChhhcCCCEEECCeeEcceEEcCeeeccEEEEccC---C
Confidence            455553  4569999999999999998 689999999999999999999999999999999999999999999953   2


Q ss_pred             CCcEEEEcCCCCCCCCceEE
Q psy2025         108 VTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus       108 ~~~V~lL~pp~~a~~G~rV~  127 (213)
                       +++.+|.||+++++|+++.
T Consensus        89 -~gi~~l~p~~~~~~G~~i~  107 (107)
T 1mkh_A           89 -ERVALLMPDKEVKLGAKVR  107 (107)
T ss_dssp             -SCEEECCCSSCCCTTCEEC
T ss_pred             -CcEEEEeCCCCCCCCCCCC
Confidence             5788999999999999973

>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=6.5e-28  Score=193.37  Aligned_cols=107  Identities=14%  Similarity=0.168  Sum_probs=89.1

Q ss_pred             cCCCcCCcee--eEEEEEEEE------eecCCCCce-EEEEEEcCCC-CeEEEEeCCCccccchhcCCCEEEEEecccce
Q psy2025          18 PLGNALAWHV--EDCDVDAQM------HTIERQKEE-AKLRLQIGEG-QDRLIVSGLANYMTAFQLYNTSVVVVCNLKPA   87 (213)
Q Consensus        18 ~~~~~~~~~v--~~~~ldirV------~~hp~adkL-yv~~VDiG~~-~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKpr   87 (213)
                      |.+|+...+-  ++..+++||      ++||+|||| |+++||+|++ ++|||+||++|+|++++|+|++|++++||||+
T Consensus        15 ~~~~~~~~i~~~df~k~~lrVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G~~n~~~p~al~G~~v~~~~nlkp~   94 (131)
T 2q2h_A           15 PTAANSGEISYADFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPR   94 (131)
T ss_dssp             CCCCCCCCCCHHHHHTSCEEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCE
T ss_pred             CCCCccCccCHHHhhccCEEEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEECCCcccChhhcCCCEEECceEEcce
Confidence            5555554321  344555554      468999999 9999999974 68999999999999999999999999999999


Q ss_pred             eecceecceEEeeeecCCCCCCcEEEEcCCCCCCCCceEE
Q psy2025          88 KFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus        88 KmrGv~SeGMLLsa~e~~~~~~~V~lL~pp~~a~~G~rV~  127 (213)
                      ||||++|+|||||+++. +  +++.+|.||+++++|+++.
T Consensus        95 kirGv~SeGMl~sa~~~-~--~gi~lL~p~~~~~~G~~i~  131 (131)
T 2q2h_A           95 QIGPFRSEVLTLGFADA-N--GDIVLAAVERPVPNGEKMC  131 (131)
T ss_dssp             EETTEEECCEECEEECT-T--SCEEEEEESSCCCTTCBCC
T ss_pred             EECCEEeCcEEEEeecC-C--CcEEEEeCCCCCCCCCCCC
Confidence            99999999999999853 2  5688999999999999873

>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4

Probab=99.94  E-value=2.2e-27  Score=185.66  Aligned_cols=89  Identities=16%  Similarity=0.271  Sum_probs=81.3

Q ss_pred             EeecCCCCc-eEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEE
Q psy2025          36 MHTIERQKE-EAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVV  114 (213)
Q Consensus        36 V~~hp~adk-Lyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL  114 (213)
                      +++||+||| ||+++||+|+.++|||+||++++|.+++|+|++|++++||||+||||++|+|||||+++.+   +.+.++
T Consensus        23 ~e~hp~adkpL~~~~Vd~G~~~~~qIv~G~~~~~~~~~l~G~~v~~~~nlkp~kirGv~S~GMl~s~~~~~---~~~~ll   99 (112)
T 3g48_A           23 AEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPPKRVAGFKSEVLVLGGVPEA---GDVVLL   99 (112)
T ss_dssp             EEEEEETTEEEEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECCSCCEEETTEEECSEECEEEEET---TEEEEC
T ss_pred             EEECCCCCCeEEEEEEEcCCCcEEEEEeCCccccChhHcCCCEEEEEccccceeECCeecCcEEeEeecCC---CCEEEE
Confidence            346899999 9999999998678999999999999999999999999999999999999999999998742   458899


Q ss_pred             cCCCCCCCCceEE
Q psy2025         115 RPPENCTAGQRVF  127 (213)
Q Consensus       115 ~pp~~a~~G~rV~  127 (213)
                      .||.++++|++|.
T Consensus       100 ~p~~~~~~G~~i~  112 (112)
T 3g48_A          100 QPNMELPNGTKIS  112 (112)
T ss_dssp             CCSSCCCTTCBCC
T ss_pred             eCCCCCCCCCCcC
Confidence            9999999999973

>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4

Probab=99.94  E-value=6.9e-27  Score=182.38  Aligned_cols=92  Identities=35%  Similarity=0.576  Sum_probs=82.1

Q ss_pred             eEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCC
Q psy2025          28 EDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNN  107 (213)
Q Consensus        28 ~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~  107 (213)
                      ++.++  .+++||+|||||+++||+|+ ++|||+||++|+|.+++|+|++|++++||||+||||+.|+|||||+++.   
T Consensus        19 VG~I~--~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~S~GMl~sa~e~---   92 (111)
T 1pyb_A           19 VAKVL--SAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAASDG---   92 (111)
T ss_dssp             EEEEE--EEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSCCBSSEECEEECS---
T ss_pred             EEEEE--EEEECCCCCccEEEEEEeCC-cEEEEEECCccccCccccCCCEEECcEeecceEEccEeeccEEEEeccC---
Confidence            44444  34568999999999999998 7899999999999999999999999999999999999999999999883   


Q ss_pred             CCcEEEEcCCCCCCCCceE
Q psy2025         108 VTRVEVVRPPENCTAGQRV  126 (213)
Q Consensus       108 ~~~V~lL~pp~~a~~G~rV  126 (213)
                       +...++.+|+++++|+++
T Consensus        93 -~~~~il~~~~~~~~G~~v  110 (111)
T 1pyb_A           93 -ENLSVIVPDRDVKEGAKL  110 (111)
T ss_dssp             -SCEEEEEESSCCCTTEEC
T ss_pred             -CceEEEECCCCCCCCCCC
Confidence             346688999999999986

>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X

Probab=99.91  E-value=5.6e-25  Score=171.64  Aligned_cols=89  Identities=29%  Similarity=0.479  Sum_probs=77.7

Q ss_pred             EeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEEc
Q psy2025          36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVR  115 (213)
Q Consensus        36 V~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL~  115 (213)
                      +++||+|||||+++||+|+ +.|||+||+.++|.+++|+|++|++++||||+||||+.|+|||||+..+++  ..+.++.
T Consensus        22 ~e~hp~adkL~v~~Vd~G~-~~~qiv~g~a~~~~~~~l~G~~v~~~~nikp~klrGv~S~GMlL~a~~ed~--~~~~l~~   98 (111)
T 1pxf_A           22 VKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDG--SESVLLT   98 (111)
T ss_dssp             EECCTTCTTCCEEEEEETT-EEEEEECCCCTTSHHHHHTTCEEEEETTCSCCCBTTBCCCCCBCEEECTTS--CCEEECC
T ss_pred             EEECCCCCeEEEEEEEeCC-CceEEEEeccCcccchhcCCCEEEEEEEEecccCCCEecceEEEEecccCC--CcEEEEc
Confidence            4568999999999999997 689999998888899999999999999999999999999999977776433  2455777


Q ss_pred             CCCCCCCCceEE
Q psy2025         116 PPENCTAGQRVF  127 (213)
Q Consensus       116 pp~~a~~G~rV~  127 (213)
                      |+.++++|+++.
T Consensus        99 p~~~~~~G~~vv  110 (111)
T 1pxf_A           99 PERMMPAGVRVV  110 (111)
T ss_dssp             CSSCCCTTCBCC
T ss_pred             CCCCCCCCCEec
Confidence            777899999974

>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}

Probab=99.86  E-value=6.1e-22  Score=168.49  Aligned_cols=93  Identities=23%  Similarity=0.259  Sum_probs=79.3

Q ss_pred             CCceeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEE---------ecccceeeccee
Q psy2025          23 LAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVV---------CNLKPAKFRGIL   93 (213)
Q Consensus        23 ~~~~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv---------~NLKprKmrGv~   93 (213)
                      ++.++++.+++  +++||+||||++|+||+|+ ++||||||++|+.     .|++|+++         +||||+||||+.
T Consensus        90 ~~~vvVG~V~~--~e~hP~ADkL~v~~VdvG~-~~~qIV~Ga~n~~-----~G~kVvva~~Ga~lp~g~nIk~~KlrGv~  161 (199)
T 3bu2_A           90 TPKFVVGYVET--KDKHPDADKLSVLSVDVAT-EKLQIVCGAPNVE-----AGQKVVVAKVGAVMPSGMVIKDAELRGVA  161 (199)
T ss_dssp             CCSEEEEEEEE--EEECTTTSSCEEEEEECSS-CEEEEEECCTTCC-----TTCEEEEECTTCBCTTSCBCCEEEETTEE
T ss_pred             CCCeEEEEEEE--EEECCCCCEEEEEEEEeCC-EEEEEEeCCchhh-----CCCEEEEEecCCCccCCceEeeeEEcCce
Confidence            56788888885  5669999999999999995 7899999999985     89999998         899999999999


Q ss_pred             cceEEeeeecC---C--CCCCcEEEEcCCCCCCCCceE
Q psy2025          94 SQGMILCASET---Y--NNVTRVEVVRPPENCTAGQRV  126 (213)
Q Consensus        94 SeGMLLsa~e~---~--~~~~~V~lL~pp~~a~~G~rV  126 (213)
                      |+|||||+++.   +  ++ .++  +.+|+++++|+++
T Consensus       162 S~GMlcSa~ELGl~~~~~~-~gI--~~l~~~~~~G~~v  196 (199)
T 3bu2_A          162 SSGMICSMKELGLPNAPQE-KGI--MVLSDDYTVGQSF  196 (199)
T ss_dssp             EESEECCTTTTTCSSCBSC-CSC--CEECTTSCTTSBS
T ss_pred             eccEEeehhhcCCCcccCC-CeE--EECCCCCCCCCcc
Confidence            99999999873   2  22 454  4557889999998

>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}

Probab=99.85  E-value=7.2e-22  Score=172.19  Aligned_cols=104  Identities=23%  Similarity=0.215  Sum_probs=80.7

Q ss_pred             ceeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecC
Q psy2025          25 WHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASET  104 (213)
Q Consensus        25 ~~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~  104 (213)
                      .++++.++  .+.+||+|||||+++||+|+ ++||||||++||.     .| ++++++||+|+||||+.|+||+||+++.
T Consensus       137 dirVGkIl--~ve~hP~AdKL~v~~VD~G~-~~rqIV~Ga~n~~-----~G-~vVvVAnLpp~klrGv~SeGMlcsa~Eg  207 (241)
T 2e8g_A          137 DIVVGEVM--SVGKHPSADRLLVTNVNIGE-RAVTVVTNDLTVK-----EG-NRVAVALLPPRNFFGIVSEGMFLGAGEG  207 (241)
T ss_dssp             CEEEEEEE--EEEECTTCTTCEEEEEECSS-CEEEEEESCTTCC-----TT-CEEEEECCCCEEETTEEECCEECEETTE
T ss_pred             CEEEEEEE--EEEECCCCCccEEEEEEeCC-ceEEEEECCcccc-----CC-CEEEEEECCCcccCCcccCcEEeECccC
Confidence            35566666  35669999999999999998 6899999999975     47 5567789999999999999999999751


Q ss_pred             CCCCCcEEEEcCCCCCCCCceEEeCCCCCCCCCCCCCCccchhhhcC
Q psy2025         105 YNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQV  151 (213)
Q Consensus       105 ~~~~~~V~lL~pp~~a~~G~rV~~~g~~~~P~~~l~~Kkk~we~i~~  151 (213)
                              +...    ..|..+.+.  ++.|++++|||||+||+++.
T Consensus       208 --------l~~~----~~G~I~~Lp--~~~p~~~lnpkkk~~e~~~~  240 (241)
T 2e8g_A          208 --------VLKN----VKGEIGGLP--KGIPLEALNETRNAVEAFLK  240 (241)
T ss_dssp             --------ECCB----CBSCTTSCC--BSCCGGGGHHHHHHHHHHHC
T ss_pred             --------CCCC----CCCcEEECC--CCCchhhcCchhhHHHHHhc
Confidence                    1211    224222221  47889999999999999875

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=99.81  E-value=1.4e-21  Score=191.23  Aligned_cols=95  Identities=33%  Similarity=0.531  Sum_probs=0.0

Q ss_pred             eEEEEEEEEe------ecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeee
Q psy2025          28 EDCDVDAQMH------TIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCA  101 (213)
Q Consensus        28 ~~~~ldirV~------~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa  101 (213)
                      ++..+++||+      +||+||||++++||+|+ ++||||||++|+|++++|+|++|++++||||+||||++|+|||||+
T Consensus       622 ~f~k~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g~~~~~~~~~l~G~~v~~~~nl~~~k~~g~~S~gM~~~~  700 (722)
T 1rqg_A          622 DFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAA  700 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhhcceEEEEEEEEEeCCCCCcceEEEEEcCC-ceEEEEECCcccCCHHHcCCCEEeCeeEEcceeeCCcccCeEEEEe
Confidence            5678888866      57999999999999998 5899999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCcEEEEcCCCCCCCCceEE
Q psy2025         102 SETYNNVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus       102 ~e~~~~~~~V~lL~pp~~a~~G~rV~  127 (213)
                      ++.    +++.+|.++.++++|++|.
T Consensus       701 ~~~----~~i~~l~~~~~~~~G~~~~  722 (722)
T 1rqg_A          701 DDG----ERVALLMPDKEVKLGAKVR  722 (722)
T ss_dssp             --------------------------
T ss_pred             eCC----CcEEEeCCCCCCCCCCCCC
Confidence            542    4688888888899999873

>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}

Probab=99.75  E-value=9.5e-19  Score=173.40  Aligned_cols=101  Identities=22%  Similarity=0.290  Sum_probs=87.2

Q ss_pred             ccCCCcCCceeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEE---------ecccce
Q psy2025          17 QPLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVV---------CNLKPA   87 (213)
Q Consensus        17 ~~~~~~~~~~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv---------~NLKpr   87 (213)
                      .++++.+++++++.++++.  +||+||||++|+||+|+++++|||||++|+.     .|++|+++         +|||++
T Consensus        36 ~~~~~~~~~~~vg~v~~~~--~hp~adkL~~~~vd~G~~~~~~iv~ga~n~~-----~g~~v~va~~Ga~l~~~~~ik~~  108 (795)
T 3pco_B           36 EPVAGSFHGVVVGEVVECA--QHPNADKLRVTKVNVGGDRLLDIVCGAPNCR-----QGLRVAVATIGAVLPGDFKIKAA  108 (795)
T ss_dssp             EESSCCCCCEEEEEEEEEE--CCTTCSSCCEEEEECSSSSCEEEECCCSSCC-----TTCEEEEECTTCBCTTSCBCCCE
T ss_pred             EecCcCCCCeEEEEEEEEE--ecCCCCeEEEEEEEcCCCcEEEEEeCCcccc-----CCCEEEEEecCcCcCCCceEccc
Confidence            4567889999999999754  8999999999999999888999999999995     89999988         699999


Q ss_pred             eecceecceEEeeeecC---CCCCCcEEEEcCCCCCCCCceEE
Q psy2025          88 KFRGILSQGMILCASET---YNNVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus        88 KmrGv~SeGMLLsa~e~---~~~~~~V~lL~pp~~a~~G~rV~  127 (213)
                      ||||+.|+|||||++|.   +++ .++  +.+|+++++|+++.
T Consensus       109 k~rG~~S~GMlcs~~elgl~~~~-~gi--~~l~~~~~~G~~~~  148 (795)
T 3pco_B          109 KLRGEPSEGMLCSFSELGISDDH-SGI--IELPADAPIGTDIR  148 (795)
T ss_dssp             ESSSSEESSEECCSGGGTSCCCC-SSC--CEECSSCCTTSBHH
T ss_pred             ccCCeecCcEecchhhcCCCCCC-CeE--EECCccccCCCCHH
Confidence            99999999999999983   333 565  44578899999883

>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*

Probab=99.69  E-value=5.9e-18  Score=167.54  Aligned_cols=102  Identities=22%  Similarity=0.167  Sum_probs=87.0

Q ss_pred             cCCCcCCceeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCcc----ccchhcCCCEEEE-Eecccceeecce
Q psy2025          18 PLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANY----MTAFQLYNTSVVV-VCNLKPAKFRGI   92 (213)
Q Consensus        18 ~~~~~~~~~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~----~~~eeL~G~kVvv-v~NLKprKmrGv   92 (213)
                      +.++.++.++++.+++  +++||+| ||++|+||+|  ++||||||++|+    +.+.+++|++++. .+||||+||||+
T Consensus        37 ~~~~~~~~~~vg~V~~--~~~hp~a-kL~v~~Vd~G--~~~qIv~Ga~n~~~g~~v~~a~~G~~l~~~~~~ik~~klrGv  111 (785)
T 1b7y_B           37 RVFPIPRGVVFARVLE--AHPIPGT-RLKRLVLDAG--RTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGV  111 (785)
T ss_dssp             ECCCCCTTEEEEEEEE--EEECTTS-SCEEEEEESS--SEEEEEECCTTCCTTCEEEEECTTCCCSSCSSCCCCEECSSS
T ss_pred             ecCcCCCCeEEEEEEE--EEECCCC-eEEEEEEecC--CEEEEEeCCCccCCCCEeEEEcCCCEeecCceEEeeeEeccc
Confidence            4557788999999995  5569999 9999999999  689999999999    5789999999887 789999999999


Q ss_pred             ecceEEeeeecC---CCCCCcEEEEcCCCCC-CCCceEE
Q psy2025          93 LSQGMILCASET---YNNVTRVEVVRPPENC-TAGQRVF  127 (213)
Q Consensus        93 ~SeGMLLsa~e~---~~~~~~V~lL~pp~~a-~~G~rV~  127 (213)
                      +|+|||||+++.   +++ .+  ++.+|+++ ++|+++.
T Consensus       112 ~S~GMlcs~~eLgl~~~~-~g--i~~l~~~~~~~G~~~~  147 (785)
T 1b7y_B          112 RSFGMALSPRELGVGEYG-GG--LLEFPEDALPPGTPLS  147 (785)
T ss_dssp             EECSEECCHHHHTSCSCC-SS--CCCBCTTSSCTTCBGG
T ss_pred             cccceeeeHHHhCCCCCC-Cc--eEECccccccCCCcHH
Confidence            999999999872   333 45  45667888 9999983

>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*

Probab=99.61  E-value=3.9e-16  Score=154.63  Aligned_cols=96  Identities=24%  Similarity=0.264  Sum_probs=80.9

Q ss_pred             cCCCcCCceeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEE---------eccccee
Q psy2025          18 PLGNALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVV---------CNLKPAK   88 (213)
Q Consensus        18 ~~~~~~~~~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv---------~NLKprK   88 (213)
                      +.+..++.++++.++++.  +|    ||++|+||+|+++++|||||++|+     ..|++|+++         +|||++|
T Consensus        37 ~~~~~~~~~vvg~v~~~~--~h----kL~~~~vd~g~~~~~~Iv~ga~n~-----~~g~~v~va~~Ga~lpg~~~ik~~k  105 (795)
T 2rhq_B           37 DYSKDIKNLVVGYIQSKE--KG----SGNICQVDIGEEEPVQIVCGAPNV-----DAGQHVIVAKVGGRLPGGIKIKRAK  105 (795)
T ss_dssp             ETTTTCEEEEEEEEEEEE--CS----SSCEEEEECSSSSCEEEECCCTTC-----CTTCEEEEEEEEEEETTTEECCCEE
T ss_pred             ecccCCCCeEEEEEEEEE--EE----eEEEEEEEcCCCeEEEEEeCCchh-----hCCCEEEEEecCcCcCCCceEccee
Confidence            456778899999999654  46    899999999987789999999998     499999998         8999999


Q ss_pred             ecceecceEEeeeecC---CC------CCCcEEEEcCCCCCCCCceEE
Q psy2025          89 FRGILSQGMILCASET---YN------NVTRVEVVRPPENCTAGQRVF  127 (213)
Q Consensus        89 mrGv~SeGMLLsa~e~---~~------~~~~V~lL~pp~~a~~G~rV~  127 (213)
                      |||++|+|||||++|.   ++      + .++  +.+|+++++|+++.
T Consensus       106 lrG~~S~GMlcs~~elGl~~~~~~~~~~-~gi--~~l~~~~~~G~~~~  150 (795)
T 2rhq_B          106 LRGERSEGMICSLQEIGISSNVVPKAYE-NGI--FVFPTEVEPGTDAL  150 (795)
T ss_dssp             ETTEEECSEECCSGGGTCCGGGSCHHHH-TSC--CBCSSCCCTTSBHH
T ss_pred             ecCccccceeeeHHHcCCCcccccccCC-CeE--EECCCCCcCCCchh
Confidence            9999999999999872   22      2 454  56688899999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	213
d1ntga_	171	b.40.4.4 (A:) C-terminal domain of metazoan tyrosy	1e-23
d1fl0a_	164	b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId	9e-23
d1pxfa_	111	b.40.4.4 (A:) Structure-specific tRNA-binding prot	3e-12
d1pyba_	107	b.40.4.4 (A:) Structure-specific tRNA-binding prot	5e-10
d1mkha_	107	b.40.4.4 (A:) C-terminal domain of methionyl-tRNA	8e-10
d1gd7a_	109	b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermo	3e-09

>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (225), Expect = 1e-23
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 5/143 (3%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
             ++ +GE + R +VSGL  ++   +L +  VVV+CNLKP K RG+ SQGM+LCAS    
Sbjct: 30  VEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIE-G 88

Query: 107 NVTRVEVVRPPENCTAGQRVFIHNRT-GIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKG 165
              +VE + PP     G+ VF+     G PD+ L PK+ V+ K+Q D K  +    +WK 
Sbjct: 89  INRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQ 148

Query: 166 HRLETVNAQRAAVDLKSDDNGHI 188
               T   +  ++  KS   G+I
Sbjct: 149 TNFMT---KLGSISCKSLKGGNI 168

>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: EMAP II
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (218), Expect = 9e-23
 Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 9/159 (5%)

Query: 34  AQMHTIERQKEEAKLRL---QIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFR 90
             + T  +  +   L +    +GE   R +VSGL N++   Q+ N  V+++CNLKPAK R
Sbjct: 11  GCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMR 70

Query: 91  GILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQ 150
           G+LSQ M++CAS       ++E++ PP     G R+      G PDK L+PK+ +W +IQ
Sbjct: 71  GVLSQAMVMCASSP----EKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQ 126

Query: 151 VDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHIR 189
            DL ++D     +KG   E     +     ++  N  I+
Sbjct: 127 PDLHTNDECVATYKGVPFEV--KGKGVCRAQTMSNSGIK 163

>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Length = 111

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Escherichia coli [TaxId: 562]

 Score = 59.2 bits (143), Expect = 3e-12
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
            +++ +G+   +  V+ L  Y +  +L   +VVV+CNL+ AK RG  S+ M+LCA     
Sbjct: 33  IVQVDVGQKTLQ-TVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDG 91

Query: 107 NVTRVEVVRPPENCTAGQRV 126
           +     ++ P     AG RV
Sbjct: 92  S--ESVLLTPERMMPAGVRV 109

>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Length = 107

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Aquifex aeolicus [TaxId: 63363]

 Score = 53.0 bits (127), Expect = 5e-10
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
           KL L +G+ +   +V+G+A Y T  +L    +V+V NLKP K  GI SQGMIL AS+  N
Sbjct: 32  KLTLSLGDEERT-VVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAASDGEN 90

Query: 107 NVTRVEVVRPPENCTAGQRV 126
               + V+ P  +   G ++
Sbjct: 91  ----LSVIVPDRDVKEGAKL 106

>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 107

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of methionyl-tRNA synthetase, MetRS-CD
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 52.2 bits (125), Expect = 8e-10
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 47  KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
            +++ +G+ + R +V+GL  Y    +L N  VVVV NL+P K RGI SQGM+L A +   
Sbjct: 32  VVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAADDG-- 88

Query: 107 NVTRVEVVRPPENCTAGQRV 126
              RV ++ P +    G +V
Sbjct: 89  --ERVALLMPDKEVKLGAKV 106

>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Length = 109

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: TRBP111 homolog CsaA
species: Thermus thermophilus [TaxId: 274]

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 53  GEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVE 112
           G    +   + +        L    VV   NL   +  G LS+ ++L   +       V 
Sbjct: 38  GPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGR---VV 94

Query: 113 VVRPPENCTAGQRVF 127
           ++ P      G +VF
Sbjct: 95  LLAPDREVPLGGKVF 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1fl0a_	164	EMAP II {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ntga_	171	C-terminal domain of metazoan tyrosyl-tRNA synthet	100.0
d1mkha_	107	C-terminal domain of methionyl-tRNA synthetase, Me	99.95
d1pyba_	107	Structure-specific tRNA-binding protein TRBP111 {A	99.94
d1pxfa_	111	Structure-specific tRNA-binding protein TRBP111 {E	99.94
d1gd7a_	109	TRBP111 homolog CsaA {Thermus thermophilus [TaxId:	99.92
d1jjcb3	113	Domain B2 of PheRS-beta, PheT {Thermus thermophilu	99.76
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	82.07

>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: EMAP II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-42  Score=284.51  Aligned_cols=147  Identities=35%  Similarity=0.591  Sum_probs=137.7

Q ss_pred             EeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEEc
Q psy2025          36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVR  115 (213)
Q Consensus        36 V~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL~  115 (213)
                      +++||+|||||+++||+|++++|||+||++++|++++++|+++++++||||+||||+.|||||||+++.    +++.++.
T Consensus        16 ~~~hP~adkL~v~~VD~G~~~~~~Iv~g~~~~~~~~~l~g~~v~~~~nlkp~kirGv~SeGMllsa~~~----~~~~ll~   91 (164)
T d1fl0a_          16 ARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP----EKIEILA   91 (164)
T ss_dssp             EEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECEEEET----TEEEECB
T ss_pred             EEECCCCCcceEEEEEccCCceEEEEeeccccccchhccCccccccccccccccCceEcceEEEeeeCC----CccEEEe
Confidence            346899999999999999988999999999999999999999999999999999999999999999974    4588999


Q ss_pred             CCCCCCCCceEEeCCCCCCCCCCCCCCccchhhhcCceEEcCCceEEECCeEEEEc-CeeEEeeecCCCCCceEE
Q psy2025         116 PPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETV-NAQRAAVDLKSDDNGHIR  189 (213)
Q Consensus       116 pp~~a~~G~rV~~~g~~~~P~~~l~~Kkk~we~i~~~L~t~~~g~a~ykg~~l~t~-~g~~~~~~l~~~~~g~i~  189 (213)
                      +|+++++|++|+|+|++.+|++.+++|+++|+.++++|++|+++.+.|+|.++.++ .|+|+++||+   |+.||
T Consensus        92 ~p~~~~~G~~v~~~~~~~~~~~~l~~k~~~~~~i~~~l~~n~~~~~~~~g~~~~~~~~g~~~~~~l~---~~~Ik  163 (164)
T d1fl0a_          92 PPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMS---NSGIK  163 (164)
T ss_dssp             CCTTCCTTCBCCCTTSCCCCCSSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTTEECBCSSCC---SCEEC
T ss_pred             CCCCCCCCCEEEecccCCCCchhcCcccchhHhhccCcEECCCCEEEECCEEeeeccCCCEEcccCC---CCeee
Confidence            99999999999999999999999999999999999999999999999999999775 6999988876   88876

>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-40  Score=272.60  Aligned_cols=158  Identities=34%  Similarity=0.542  Sum_probs=143.2

Q ss_pred             eeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCC
Q psy2025          26 HVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETY  105 (213)
Q Consensus        26 ~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~  105 (213)
                      .+++.+++  +.+||+|||||+++||+|++++|||+||+.++++.+++.|+++++++||||+||||+.|||||||+++.+
T Consensus        11 i~VG~I~~--v~~hP~adkL~v~~Vd~G~~~~~~Iv~g~~~~~~~~~~~g~~v~~~~nlk~~kirGv~SeGMl~s~~e~g   88 (171)
T d1ntga_          11 IRVGKIIT--VEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEG   88 (171)
T ss_dssp             EEEEEEEE--EEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEECEEEEES
T ss_pred             EEEEEEEE--EEECCCCCeeEEEEEEeCCCceEEEEeecccccccchhcccccceeeeccccccCccccceEEeecccCC
Confidence            44566663  4568999999999999999889999999999999999999999999999999999999999999999864


Q ss_pred             CCCCcEEEEcCCCCCCCCceEEeCCCC-CCCCCCCCCCccchhhhcCceEEcCCceEEECCeEEEEcCeeEEeeecCCCC
Q psy2025         106 NNVTRVEVVRPPENCTAGQRVFIHNRT-GIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDD  184 (213)
Q Consensus       106 ~~~~~V~lL~pp~~a~~G~rV~~~g~~-~~P~~~l~~Kkk~we~i~~~L~t~~~g~a~ykg~~l~t~~g~~~~~~l~~~~  184 (213)
                      .+ +.++++.+|.++++|++++|+|++ .+|+..+++|+|.|+.++++|.|++||.|+|+|.+|.|+.|+|++++++   
T Consensus        89 ~~-~~~~~~~~p~~~~~G~~v~~~~~~~~~~~~~~~~k~k~~~~~~~~l~v~~d~~a~~k~~~~~t~~g~~~~~~i~---  164 (171)
T d1ntga_          89 IN-RQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLK---  164 (171)
T ss_dssp             SS-EEEEECBCCBTCCTTCEEEETTCSSCCCCSSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEETTEECBCSSCT---
T ss_pred             Cc-cceeeecCCCCCCCcCEEEECCccccCcccccCcccchHHHhcccccCCCCCEEEECCeeeecCCCCEEeccCC---
Confidence            43 567788999999999999999997 7889999999999999999999999999999999999999999987766   


Q ss_pred             CceEE
Q psy2025         185 NGHIR  189 (213)
Q Consensus       185 ~g~i~  189 (213)
                      ||.|-
T Consensus       165 ~~~iS  169 (171)
T d1ntga_         165 GGNIS  169 (171)
T ss_dssp             TCEEE
T ss_pred             CCEEe
Confidence            77764

>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of methionyl-tRNA synthetase, MetRS-CD
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.95  E-value=9.5e-29  Score=189.84  Aligned_cols=87  Identities=34%  Similarity=0.564  Sum_probs=79.5

Q ss_pred             EeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEEc
Q psy2025          36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVR  115 (213)
Q Consensus        36 V~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL~  115 (213)
                      +++||+|||||+++||+|+ +.|||+||++++|++++|+|++|++++||||+||||+.|||||||+++.    +++.+|.
T Consensus        21 ~~~hp~adkL~~~~Vd~G~-~~~~Iv~G~~~~~~~e~liG~~v~~v~nlk~~kirGv~SeGMl~s~~e~----~~~~ll~   95 (107)
T d1mkha_          21 VKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAADDG----ERVALLM   95 (107)
T ss_dssp             EEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEECCCBCEEECS----SCEEECC
T ss_pred             EEecCCCCceEEEEEEcCC-eEEEEEEEeeeEEcCcccCCCEEEeecCCCcccCCCccCCEEEEEeecC----CcEEEEE
Confidence            3468999999999999998 6899999999999999999999999999999999999999999999874    4577899


Q ss_pred             CCCCCCCCceEE
Q psy2025         116 PPENCTAGQRVF  127 (213)
Q Consensus       116 pp~~a~~G~rV~  127 (213)
                      ||.++++|++|.
T Consensus        96 ~~~~~~~G~~ir  107 (107)
T d1mkha_          96 PDKEVKLGAKVR  107 (107)
T ss_dssp             CSSCCCTTCEEC
T ss_pred             CCCCCCCCCccC
Confidence            999999999974

>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.94  E-value=1.6e-28  Score=188.68  Aligned_cols=87  Identities=37%  Similarity=0.621  Sum_probs=79.5

Q ss_pred             EeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEEc
Q psy2025          36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVR  115 (213)
Q Consensus        36 V~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL~  115 (213)
                      +++||+|||||+++||+|+ +.|||+||+.++|++++|+|++|++++||||+||||+.||||+||+++.    +++.+|.
T Consensus        21 ~e~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~~e~liGk~v~~v~Nlkp~kirG~~SegMil~~~d~----~~~~ll~   95 (107)
T d1pyba_          21 AERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAASDG----ENLSVIV   95 (107)
T ss_dssp             EECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSCCBSSEECEEECS----SCEEEEE
T ss_pred             EEeccccCceEEEEeecCC-cccceEEeeecccChhHhcCcEEEEEeccccceECCeeeeEEEEEEEcC----CceEEEe
Confidence            3468999999999999998 5799999999999999999999999999999999999999999999874    4577888


Q ss_pred             CCCCCCCCceEE
Q psy2025         116 PPENCTAGQRVF  127 (213)
Q Consensus       116 pp~~a~~G~rV~  127 (213)
                      ||.++++|++|.
T Consensus        96 p~~~~~~G~~is  107 (107)
T d1pyba_          96 PDRDVKEGAKLS  107 (107)
T ss_dssp             ESSCCCTTEECC
T ss_pred             CCCCCCCCCccC
Confidence            888999999873

>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=9.7e-28  Score=185.33  Aligned_cols=89  Identities=29%  Similarity=0.479  Sum_probs=78.6

Q ss_pred             EeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEEc
Q psy2025          36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVR  115 (213)
Q Consensus        36 V~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL~  115 (213)
                      +++||+|||||+++||+|+ +.|||+||+.++|++++|+|++|++++||||+||||+.|||||||+.+.+.  ..+.++.
T Consensus        22 ~e~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~~e~lvGk~v~~v~Nlkp~kirGv~SeGMil~~~~~d~--~~~~ll~   98 (111)
T d1pxfa_          22 VKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDG--SESVLLT   98 (111)
T ss_dssp             EECCTTCTTCCEEEEEETT-EEEEEECCCCTTSHHHHHTTCEEEEETTCSCCCBTTBCCCCCBCEEECTTS--CCEEECC
T ss_pred             EEEcCCCCceEEEEEEeCC-cceeEEEEcccccChhHhcCceeeeecccccceECCeeceEEEEEeEcCCC--CcEEEEc
Confidence            3468999999999999997 679999999999999999999999999999999999999999999987433  3455677


Q ss_pred             CCCCCCCCceEE
Q psy2025         116 PPENCTAGQRVF  127 (213)
Q Consensus       116 pp~~a~~G~rV~  127 (213)
                      |+.++++|+||.
T Consensus        99 p~~~~~~G~rv~  110 (111)
T d1pxfa_          99 PERMMPAGVRVV  110 (111)
T ss_dssp             CSSCCCTTCBCC
T ss_pred             CCCCCCCCCEec
Confidence            777899999974

>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: TRBP111 homolog CsaA
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=6e-26  Score=173.91  Aligned_cols=89  Identities=21%  Similarity=0.320  Sum_probs=77.7

Q ss_pred             EeecCCCCce-EEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEecccceeecceecceEEeeeecCCCCCCcEEEE
Q psy2025          36 MHTIERQKEE-AKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVV  114 (213)
Q Consensus        36 V~~hp~adkL-yv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~NLKprKmrGv~SeGMLLsa~e~~~~~~~V~lL  114 (213)
                      +++||+|||| |++.+|.|+.++++|+||+.++|++++|+|+++++++||||+||||+.|||||||+++.+   +++.+|
T Consensus        20 ~e~hp~adkll~~~v~~~g~~~~~~i~~~~~~~~~~e~lvG~~v~~~~Nlkp~kirGv~SeGMiL~~~~~~---~~~~ll   96 (109)
T d1gd7a_          20 AEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEA---GRVVLL   96 (109)
T ss_dssp             EEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECSSCCEEETTEEECSEECEEECTT---SCEEEE
T ss_pred             EEEccCcccccEEEEEecCcccceEEeeccccccChhhhcCCccccccccCcceEccccCCEEEEEEEcCC---CcEEEE
Confidence            3368999985 555556666678999999999999999999999999999999999999999999998743   468899


Q ss_pred             cCCCCCCCCceEE
Q psy2025         115 RPPENCTAGQRVF  127 (213)
Q Consensus       115 ~pp~~a~~G~rV~  127 (213)
                      .||.++++|+||+
T Consensus        97 ~p~~~~~~G~ri~  109 (109)
T d1gd7a_          97 APDREVPLGGKVF  109 (109)
T ss_dssp             EESSCCCTTCBCC
T ss_pred             eCCCCCCCCCccC
Confidence            9999999999985

>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Domain B2 of PheRS-beta, PheT
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=8.3e-19  Score=135.55  Aligned_cols=94  Identities=22%  Similarity=0.214  Sum_probs=75.8

Q ss_pred             CcCCceeeEEEEEEEEeecCCCCceEEEEEEcCCCCeEEEEeCCCccccchhcCCCEEEEEe----------cccceeec
Q psy2025          21 NALAWHVEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVC----------NLKPAKFR   90 (213)
Q Consensus        21 ~~~~~~v~~~~ldirV~~hp~adkLyv~~VDiG~~~~rqIVSGl~n~~~~eeL~G~kVvvv~----------NLKprKmr   90 (213)
                      |..++++.+.++++  ++||+ +||++++||.|+  .+|||||+.|+.     .|.+|+++.          +|++++||
T Consensus         2 ~~~~gvvvg~I~~~--~~hP~-~kL~~~~Vd~g~--~~~IV~ga~Nv~-----~g~~v~vA~~Ga~lp~~g~~I~~~kir   71 (113)
T d1jjcb3           2 PIPRGVVFARVLEA--HPIPG-TRLKRLVLDAGR--TVEVVSGAENAR-----KGIGVALALPGTELPGLGQKVGERVIQ   71 (113)
T ss_dssp             CCCTTEEEEEEEEE--EECTT-SSCEEEEEESSS--EEEEEECCTTCC-----TTCEEEEECTTCCCTTCSSCCCEEEET
T ss_pred             CCCCCEEEEEEEEe--EeCCC-CcEEEEEECCCC--EEEEEeCCchhh-----cCcEEEEEecccccCcccceeccceec
Confidence            45678999999865  67896 789999999984  799999999985     788888763          59999999


Q ss_pred             ceecceEEeeeec---CCCCCCcEEEEcCCCC-CCCCceEE
Q psy2025          91 GILSQGMILCASE---TYNNVTRVEVVRPPEN-CTAGQRVF  127 (213)
Q Consensus        91 Gv~SeGMLLsa~e---~~~~~~~V~lL~pp~~-a~~G~rV~  127 (213)
                      |++|+|||||++|   .+++ +++  +.+|++ .++|+++.
T Consensus        72 Gv~S~GMlcS~~ELGl~~~~-~GI--~~L~~d~~~~G~~~~  109 (113)
T d1jjcb3          72 GVRSFGMALSPRELGVGEYG-GGL--LEFPEDALPPGTPLS  109 (113)
T ss_dssp             TEEEESEECCHHHHTSCSCC-SSC--CCBCTTSSCTTCBGG
T ss_pred             CEeeeeEEecHHHcCCCCCC-CcE--EEeCCCCCCCCCchH
Confidence            9999999999987   2344 565  445666 49999863

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.07  E-value=0.19  Score=27.95  Aligned_cols=9  Identities=44%  Similarity=1.291  Sum_probs=8.4

Q ss_pred             CCCCCceeE
Q psy2025           2 CGQCGHTFR   10 (213)
Q Consensus         2 ~~~~~~~~~   10 (213)
                      |.+||++|+
T Consensus         5 C~eCgK~F~   13 (26)
T d1x6ea2           5 CLECGKAFS   13 (26)
T ss_dssp             CSSSCCEES
T ss_pred             CCCCcCeec
Confidence            999999996