Psyllid ID: psy216

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650
IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYIQSD
ccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccHHHccccccccccccccHHHHcccHHHcccHHHHHHHHHHHcccccccccEEEcccccccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEHcccccccccccccccccHHHHHccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEEccccccccccEEEEEccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHcHHHHHHHcccccccc
cHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEEcccEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHcccccccccHcccccccccEEEEccHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHccccccccccccccEEEccccccccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHHHccccccEEEcccEEEEEccHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEEEEccccccccccHccHHHHHHHcHHHcccc
IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISgayrtspieslyaengqpplETRRKILLAnygtrvkcnpsnpvsLILTHAQlgrninranlprtvkSRLEDLQIFDRISAQvikrdeyiapwelsvPEIIYLTSEKKENLSSVAVKNAFfqfkgenqnslfcytdgsktaansgcayitETESQVFKLYNENSVFSSELLAIFMLLSHicntrsrpeyifrdsvfiCTDSKSSLLALknimspnhLVNNILVKINELKILNITVKFlwipshlgiagnvQVDElaknsqnapllsmmTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLrighshlthnfllkredpplcewcnVQLSIQHILLECRKFRASRNKWHLKDDIsallgddhdEIYKCIIISAQvikrdeyiapwelsvPEIIYLTSEKKENLSSVAVKNAFfqfkgenqnslfcytdgsktaansgcayitETESQVFKLYNENSVFSSELLAIFMLLSHiystssrteyifrdsifICTDSKSSLLALknimspnhLVNNILVKINELKILNITVKFlwipshlgiagnvqvPFLEILKSSYKYIQSD
ikslkainilkvlnnktwglsrACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIEslyaengqppleTRRKILLANYGTRVKCNPSNPVSLILTHAQlgrninranlprtvksrledlQIFDRIsaqvikrdeyiapwelsVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLhwknnvinnklrrikedtllwkssfdkdrrkEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYIQSD
IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYIQSD
****KAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENG**PLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDEL*******************SAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYI***
****K**NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDE***NSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLE************
IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYIQSD
IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYIQS*
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iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYIQSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query650 2.2.26 [Sep-21-2011]
P325421146 Pol polyprotein OS=Equine yes N/A 0.224 0.127 0.284 4e-05
P112041146 Pol polyprotein OS=Equine yes N/A 0.224 0.127 0.284 4e-05
P033711145 Pol polyprotein OS=Equine yes N/A 0.224 0.127 0.279 0.0002
P059621461 Gag-Pol polyprotein OS=Hu yes N/A 0.166 0.073 0.304 0.0003
Q828511432 Gag-Pol polyprotein OS=Je N/A N/A 0.203 0.092 0.276 0.0003
P241071462 Gag-Pol polyprotein OS=Hu yes N/A 0.166 0.073 0.296 0.0003
P177571462 Gag-Pol polyprotein OS=Hu yes N/A 0.166 0.073 0.296 0.0004
Q741201463 Gag-Pol polyprotein OS=Hu yes N/A 0.166 0.073 0.304 0.0005
P158331465 Gag-Pol polyprotein OS=Hu yes N/A 0.166 0.073 0.288 0.0008
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22) GN=pol PE=1 SV=1 Back     alignment and function desciption
 Score = 50.4 bits (119), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 26/172 (15%)

Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
           WE+        +PEI+Y           V   +   +   E  + +  YTDG K      
Sbjct: 584 WEMQKGWYYSWLPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGI 635

Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
            AY+T       K     +   +E +AI M L    +TR +   I  DS + C  + +  
Sbjct: 636 AAYVTSNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEG 691

Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
           L L+   SP      I+  I E +I    V F W+P H GI GN   DE AK
Sbjct: 692 LGLEGPQSPWW---PIIQNIREKEI----VYFAWVPGHKGICGNQLADEAAK 736
During replicative cycle of retroviruses, the reverse-transcribed viral DNA is integrated into the host chromosome by the viral integrase enzyme. RNase H activity is associated with the reverse transcriptase.
Equus caballus (taxid: 9796)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: 2
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369) GN=pol PE=1 SV=1 Back     alignment and function description
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming) GN=pol PE=3 SV=1 Back     alignment and function description
>sp|P05962|POL_HV2NZ Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate NIH-Z) GN=gag-pol PE=3 SV=3 Back     alignment and function description
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1 Back     alignment and function description
>sp|P24107|POL_HV2CA Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate CAM2) GN=gag-pol PE=3 SV=3 Back     alignment and function description
>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate D194) GN=gag-pol PE=3 SV=3 Back     alignment and function description
>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate KR) GN=gag-pol PE=3 SV=3 Back     alignment and function description
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B (isolate D205) GN=gag-pol PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query650
427791807 1212 Putative tick transposon, partial [Rhipi 0.676 0.363 0.339 6e-62
427791321 1210 Putative tick transposon, partial [Rhipi 0.676 0.363 0.339 6e-62
125901787 1222 pol-like protein [Biomphalaria glabrata] 0.653 0.347 0.335 9e-61
427791063 1035 Putative tick transposon, partial [Rhipi 0.644 0.404 0.317 2e-52
427778603 1397 Putative tick transposon [Rhipicephalus 0.650 0.302 0.299 7e-52
427798887 1199 Putative tick transposon, partial [Rhipi 0.650 0.352 0.313 7e-49
427798885 1199 Putative tick transposon, partial [Rhipi 0.650 0.352 0.309 5e-48
427798889 1199 Putative tick transposon, partial [Rhipi 0.650 0.352 0.307 6e-48
443693558502 hypothetical protein CAPTEDRAFT_189741, 0.410 0.531 0.361 1e-35
443710566377 hypothetical protein CAPTEDRAFT_186063 [ 0.558 0.962 0.310 1e-34
>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 258/466 (55%), Gaps = 26/466 (5%)

Query: 1    IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
            +K+ KA+N+LKVL++K WG  R CLLR++ + VR I+DYG V+YGSA +S + +L+ V++
Sbjct: 739  VKANKALNLLKVLSHKHWGSDRLCLLRIYRSIVRSILDYGCVVYGSARESYIRRLDPVHN 798

Query: 61   TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
              LR+ SGAYRTSP+ESLY +  +PPL  RR  L  +Y  R++ +P +    I T     
Sbjct: 799  LGLRLSSGAYRTSPVESLYVDCNEPPLSHRRASLTLSYVLRIRSSPQHICYDIATRCSSR 858

Query: 121  RN-INRANLPRTVKSRLEDL---QIFDRISAQVIKRDEYIAPW-ELSVPEIIYLTSEKKE 175
             + +N++NL + +  R E+     +    +  V ++   I PW +L+    I L+   K+
Sbjct: 859  LHYLNKSNLIKPLLLRFEEYCRTYVISEETLDVARKPPRIPPWFDLAQLCDISLSHINKK 918

Query: 176  NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSE 235
                  +   F   + + ++    YTDGSKT  + G   +T   +   ++    S+F++E
Sbjct: 919  VTPPELIIQEFRALQEKYRDYAEFYTDGSKTRDHVGIGIVTGESAFSVRVPQCISIFTAE 978

Query: 236  LLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNIL--VKINE 293
            + A++     I   + +   I+       TDS S+L AL        LV +IL  V IN 
Sbjct: 979  VYALYEAARKIIAGKHKKAIIY-------TDSLSALKALHIKSECEPLVGDILNMVLINS 1031

Query: 294  LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWH 352
             K+  I+++F W+PSH+GI GN + D+ A  + +  L  + +  +D +  I+  LL++W 
Sbjct: 1032 -KV--ISMRFCWVPSHVGIPGNEKADKCASLAAHKTLTKIRIPLKDSQRTIRLALLAKWQ 1088

Query: 353  LHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLC 412
              W ++  +NKL  +K     WK+   ++R  E+++CRLRIGH+HLTHNFLL +E+ P+C
Sbjct: 1089 QQW-DSCTSNKLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMC 1147

Query: 413  EWCNVQLSIQHILLECRKFRASRNKW-------HLKDDISALLGDD 451
            E C   L++ HIL+ C      R K+       ++    + LLGDD
Sbjct: 1148 EKCQEPLTLIHILILCPNIETQRQKYFSKLYKQYIPLHPTLLLGDD 1193

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata] Back     alignment and taxonomy information
>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427778603|gb|JAA54753.1| Putative tick transposon [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta] Back     alignment and taxonomy information
>gi|443710566|gb|ELU04776.1| hypothetical protein CAPTEDRAFT_186063 [Capitella teleta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query650
ASPGD|ASPL0000075333486 AN10625 [Emericella nidulans ( 0.353 0.473 0.258 4e-11
ASPGD|ASPL0000075333 AN10625 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
 Score = 186 (70.5 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 66/255 (25%), Positives = 115/255 (45%)

Query:   200 YTDGSKTAANSGCAYITE----TESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY 255
             YTDGS      G A I      + S      +E++V+ +EL  I + L  I   + +   
Sbjct:   186 YTDGSGINGRVGAAAICPKYLISRSSYMGQQSESTVYVAELQGILLALVIILQRQMQHAV 245

Query:   256 IFRDSVFICTDSKSSLLALKN--IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIA 313
             IF       TD++++L AL+N    S  +++  I++ +N+ +   + V F WIP+H G+ 
Sbjct:   246 IF-------TDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVE 298

Query:   314 GNVQVDELAKNSQN-APLLSMMTSEDLKSAIKKK----LLSEWHLHWKNNVINNKLRRIK 368
             GN Q D  AK +     +        ++SA+K++    + + W   WK+     +L  + 
Sbjct:   299 GNEQADRRAKEATGWRRIRGHRGRMTIRSAVKRRAHEVVNARWENDWKSCHHGRELYELT 358

Query:   369 EDTL--LWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPL----CEWCNVQLSIQ 422
                   + +   D  R    +I ++R G   L H +L +R  P +    C+      S++
Sbjct:   359 PTPTRKVLRVHQDLHRALSTIIVQMRTGKIGLRH-YLYQRGVPDVPNSDCQCGRATQSVR 417

Query:   423 HILLECRKFRASRNK 437
             HILL C  F   R +
Sbjct:   418 HILLACPTFSGLREE 432
GO:0008150 "biological_process" evidence=ND
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004523 "ribonuclease H activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.26.4LOW CONFIDENCE prediction!
3rd Layer3.1.260.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query650
cd09276128 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom 2e-28
cd09276128 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom 3e-24
pfam00075126 pfam00075, RNase_H, RNase H 1e-14
pfam00075126 pfam00075, RNase_H, RNase H 8e-11
cd09280150 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase 1e-04
cd06222123 cd06222, RNase_H, RNase H is an endonuclease that 0.001
>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases Back     alignment and domain information 
 Score =  110 bits (276), Expect = 2e-28
 Identities = 47/129 (36%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 198 FCYTDGSKTAANSGCA---YITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
             YTDGSK    +G         T S+ +KL    SVF +ELLAI   L        R  
Sbjct: 1   VIYTDGSKLEGRTGAGFAIVRKGTISRSYKLGPYCSVFDAELLAILEALQLALREGRRAR 60

Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
            I      I +DS+++L AL++  S + LV  I   I EL    + V+  W+P H GI G
Sbjct: 61  KIT-----IFSDSQAALKALRSPRSSSPLVLRIRKAIRELANHGVKVRLHWVPGHSGIEG 115

Query: 315 NVQVDELAK 323
           N + D LAK
Sbjct: 116 NERADRLAK 124

Ribonuclease H (RNase H) is classified into two families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). Ribonuclease HI (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as an adjunct domain to the reverse transcriptase gene in retroviruses, long-term repeat (LTR)-bearing retrotransposons and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD), are unvaried across all RNase H domains. The position of the RNase domain of non-LTR and LTR transposons is at the carboxyl terminal of the reverse transcriptase (RT) domain and their RNase domains group together, indicating a common evolutionary origin. Many non-LTR transposons have lost the RNase domain because their activity is at the nucleus and cellular RNase may suffice; however LTR retotransposons always encode their own RNase domain because it requires RNase activity in RNA-protein particles in the cytoplasm. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Length = 128
>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases Back     alignment and domain information
>gnl|CDD|215695 pfam00075, RNase_H, RNase H Back     alignment and domain information
>gnl|CDD|215695 pfam00075, RNase_H, RNase H Back     alignment and domain information
>gnl|CDD|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and more complex than their prokaryotic counterparts and unlike prokaryote, RNase H are essential in higher eukaryote Back     alignment and domain information
>gnl|CDD|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 650
PRK06548161 ribonuclease H; Provisional 99.89
PRK08719147 ribonuclease H; Reviewed 99.87
COG0328154 RnhA Ribonuclease HI [DNA replication, recombinati 99.87
PRK00203150 rnhA ribonuclease H; Reviewed 99.83
PF00075132 RNase_H: RNase H; InterPro: IPR002156 The RNase H 99.82
PF00075132 RNase_H: RNase H; InterPro: IPR002156 The RNase H 99.8
PRK08719147 ribonuclease H; Reviewed 99.76
PRK06548161 ribonuclease H; Provisional 99.76
PRK00203150 rnhA ribonuclease H; Reviewed 99.74
COG0328154 RnhA Ribonuclease HI [DNA replication, recombinati 99.7
cd06222130 RnaseH RNase H (RNase HI) is an endonuclease that 99.7
KOG3752|consensus371 99.69
PRK13907128 rnhA ribonuclease H; Provisional 99.68
cd06222130 RnaseH RNase H (RNase HI) is an endonuclease that 99.61
KOG3752|consensus371 99.5
PRK07708219 hypothetical protein; Validated 99.5
PRK07238 372 bifunctional RNase H/acid phosphatase; Provisional 99.41
PRK13907128 rnhA ribonuclease H; Provisional 99.4
PRK07708219 hypothetical protein; Validated 99.15
PF1345687 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH 99.13
PRK07238372 bifunctional RNase H/acid phosphatase; Provisional 98.97
PF1345687 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH 98.64
PF1396686 zf-RVT: zinc-binding in reverse transcriptase 95.58
>PRK06548 ribonuclease H; Provisional Back     alignment and domain information 
Probab=99.89  E-value=1.3e-22  Score=188.76  Aligned_cols=124  Identities=23%  Similarity=0.262  Sum_probs=97.8

Q ss_pred             CcEEEEECCCCCCC--ceeEEEEEccceeeecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHHHHH
Q psy216          511 NSLFCYTDGSKTAA--NSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLL  588 (650)
Q Consensus       511 ~~~~IyTDgS~~~~--~~G~g~v~~~~~~~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~al~  588 (650)
                      ..+.||||||+.++  .+|+|+++.......+....+||++|||+||+.||+.+... .       ..|+|+|||++|++
T Consensus         4 ~~~~IytDGa~~gnpg~~G~g~~~~~~~~~~g~~~~~TNnraEl~Aii~aL~~~~~~-~-------~~v~I~TDS~yvi~   75 (161)
T PRK06548          4 NEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIATRHT-D-------RPILILSDSKYVIN   75 (161)
T ss_pred             CEEEEEEeeccCCCCCceEEEEEEeCCcEEccCCCCCCHHHHHHHHHHHHHHhhhcC-C-------ceEEEEeChHHHHH
Confidence            45899999999876  47889888754444444456899999999999999866431 1       45999999999999


Q ss_pred             HhhC---------CC--CchhHH-HHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhcc
Q psy216          589 ALKN---------IM--SPNHLV-NNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSS  643 (650)
Q Consensus       589 ~i~~---------~~--~~~~~~-~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~  643 (650)
                      +|+.         +.  +++++. +++++.+..+..+ ..|+|.|||||+|++|||.||+||+.|+.
T Consensus        76 ~i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa~  141 (161)
T PRK06548         76 SLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAAN  141 (161)
T ss_pred             HHHHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            9983         32  445544 6677777777665 47999999999999999999999999874

>PRK08719 ribonuclease H; Reviewed Back     alignment and domain information
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00203 rnhA ribonuclease H; Reviewed Back     alignment and domain information
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site Back     alignment and domain information
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site Back     alignment and domain information
>PRK08719 ribonuclease H; Reviewed Back     alignment and domain information
>PRK06548 ribonuclease H; Provisional Back     alignment and domain information
>PRK00203 rnhA ribonuclease H; Reviewed Back     alignment and domain information
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair] Back     alignment and domain information
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner Back     alignment and domain information
>KOG3752|consensus Back     alignment and domain information
>PRK13907 rnhA ribonuclease H; Provisional Back     alignment and domain information
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner Back     alignment and domain information
>KOG3752|consensus Back     alignment and domain information
>PRK07708 hypothetical protein; Validated Back     alignment and domain information
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional Back     alignment and domain information
>PRK13907 rnhA ribonuclease H; Provisional Back     alignment and domain information
>PRK07708 hypothetical protein; Validated Back     alignment and domain information
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B Back     alignment and domain information
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional Back     alignment and domain information
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B Back     alignment and domain information
>PF13966 zf-RVT: zinc-binding in reverse transcriptase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query650
1mu2_A555 Crystal Structure Of Hiv-2 Reverse Transcriptase Le 3e-04
>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase Length = 555 Back     alignment and structure 
Iteration: 1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
           YTDGS  + +      Y+T+      K   + +   +EL A  M L     T S P+  I
Sbjct: 440 YTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMAL-----TDSGPKVNI 494
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
             DS ++       ++A +   S + +VN I+    E  I    +   W+P+H GI GN 
Sbjct: 495 IVDSQYVM-----GIVASQPTESESKIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 545
Query: 317 QVDEL 321
           +VD L
Sbjct: 546 EVDHL 550

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query650
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
2kq2_A147 Ribonuclease H-related protein; PSI, NESG, protein 6e-06
2zd1_A557 Reverse transcriptase/ribonuclease H; P51/P66, het 5e-05
3p1g_A165 Xenotropic murine leukemia virus-related virus (X 6e-05
1mu2_A555 HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.6 bits (133), Expect = 4e-08
 Identities = 86/625 (13%), Positives = 181/625 (28%), Gaps = 152/625 (24%)

Query: 121 RNINRANLPRTVKSRLEDLQIFD--RISAQVIKRDEY----IAPWELS-VPEIIYLTSEK 173
           ++I        V     +    D   +   ++ ++E     ++   +S    + +    K
Sbjct: 19  KDILSVFEDAFVD----NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFS 233
           +E +    V+           N  F      KT              Q  +LYN+N VF+
Sbjct: 75  QEEMVQKFVEEV------LRINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 234 ----SELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNI 287
               S L     L   +   R     +  D V      K+ +      +      +   I
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAK-NVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKI 184

Query: 288 L-VKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKK 346
             + +         ++ L    +  I  N      + +S N  L        +++ +++ 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ-IDPNWT--SRSDHSSNIKL----RIHSIQAELRRL 237

Query: 347 LLSEWHLH--------WKNNVI---NNKLRRIKEDTLL---WKSSFDK---DRRKEIVIC 389
           L S+ + +                 N   +      LL   +K   D         I + 
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCK-----ILLTTRFKQVTDFLSAATTTHISLD 292

Query: 390 RLRIGHSHLTH--------NFL-LKREDPPLCEWCNVQ-LSIQHILLECRKFRASRNKW- 438
              +    LT          +L  + +D P  E        +  I    R   A+ + W 
Sbjct: 293 HHSMT---LTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 439 HLKDD---------ISALLGDDHDEIYK-CII------ISAQVIKRDEYIAPWELSVPEI 482
           H+  D         ++ L   ++ +++    +      I   ++        W   +   
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-----IWFDVIKSD 403

Query: 483 IYLTSEKKENLSSVAVKNAFFQFKGENQNSLF---CYTDGSKTAANSGCAYITETESQVF 539
           + +   K    S V         K   ++++     Y +      N            + 
Sbjct: 404 VMVVVNKLHKYSLVE--------KQPKESTISIPSIYLELKVKLENE-----YALHRSIV 450

Query: 540 KLYNENSVFSSELLAIFMLLSHIYS-------TSSRTEY------IFRDSIFICTDSKSS 586
             YN    F S+ L    L  + YS            E       +F D  F+  + K  
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQK-- 506

Query: 587 LLALKNIMSPNHLVNNILVKINELK---------------ILNITVKFLWIPSHLGIAGN 631
              +++  +  +   +IL  + +LK               ++N  + FL       I   
Sbjct: 507 ---IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

Query: 632 ----VQVPFL----EILKSSYKYIQ 648
               +++  +     I + ++K +Q
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQVQ 588
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Length = 147 Back     alignment and structure
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ... Length = 557 Back     alignment and structure
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A Length = 165 Back     alignment and structure
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Length = 555 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query650
3qio_A150 GAG-POL polyprotein; RNAse H, inhibitor, nuclease, 99.88
2qkb_A154 Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy 99.87
3h08_A146 RNH (ribonuclease H); RNAse H, 3D-structure, endon 99.87
1jl1_A155 Ribonuclease HI; RNAse HI, protein stability, ther 99.86
2e4l_A158 Ribonuclease HI, RNAse HI; hydrolase, endoribonucl 99.85
3p1g_A165 Xenotropic murine leukemia virus-related virus (X 99.85
2kq2_A147 Ribonuclease H-related protein; PSI, NESG, protein 99.84
1ril_A166 Ribonuclease H; hydrolase(endoribonuclease); 2.80A 99.82
2qkb_A154 Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy 99.82
2lsn_A165 Reverse transcriptase; RNAse H, viral protein; NMR 99.81
3h08_A146 RNH (ribonuclease H); RNAse H, 3D-structure, endon 99.79
2kq2_A147 Ribonuclease H-related protein; PSI, NESG, protein 99.79
3qio_A150 GAG-POL polyprotein; RNAse H, inhibitor, nuclease, 99.78
3hst_B141 Protein RV2228C/MT2287; ribonuclease H1, RV2228C N 99.77
1jl1_A155 Ribonuclease HI; RNAse HI, protein stability, ther 99.77
3p1g_A165 Xenotropic murine leukemia virus-related virus (X 99.77
3u3g_D140 Ribonuclease H, RNAse H1; hydrolase, cleave the RN 99.76
2e4l_A158 Ribonuclease HI, RNAse HI; hydrolase, endoribonucl 99.76
1mu2_A555 HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym 99.74
2zd1_A557 Reverse transcriptase/ribonuclease H; P51/P66, het 99.73
1ril_A166 Ribonuclease H; hydrolase(endoribonuclease); 2.80A 99.73
2ehg_A149 Ribonuclease HI; RNAse HI, hyperthermophilic archa 99.72
2lsn_A165 Reverse transcriptase; RNAse H, viral protein; NMR 99.68
3u3g_D140 Ribonuclease H, RNAse H1; hydrolase, cleave the RN 99.62
3hst_B141 Protein RV2228C/MT2287; ribonuclease H1, RV2228C N 99.62
2zd1_A557 Reverse transcriptase/ribonuclease H; P51/P66, het 99.57
1mu2_A555 HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym 99.57
2ehg_A149 Ribonuclease HI; RNAse HI, hyperthermophilic archa 99.56
1zbf_A142 Ribonuclease H-related protein; RNAse H, RNA/DNA h 99.3
4htu_A134 Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, 99.17
1zbf_A142 Ribonuclease H-related protein; RNAse H, RNA/DNA h 98.75
4htu_A134 Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, 98.48
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A Back     alignment and structure
Probab=99.88  E-value=7.1e-23  Score=189.58  Aligned_cols=122  Identities=26%  Similarity=0.357  Sum_probs=92.1

Q ss_pred             CCcEEEEECCCCCCCc--eeEEEEEcccee-eecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHHH
Q psy216          510 QNSLFCYTDGSKTAAN--SGCAYITETESQ-VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS  586 (650)
Q Consensus       510 ~~~~~IyTDgS~~~~~--~G~g~v~~~~~~-~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~a  586 (650)
                      .+.+.||||||+.+++  .|+|+++..... .+.. ..+||++||++|++.||+.+    .       .+|.|+|||+++
T Consensus        10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~-------~~v~i~tDS~~v   77 (150)
T 3qio_A           10 VGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----G-------LEVNIVTDSQYA   77 (150)
T ss_dssp             TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----C-------SEEEEEESCHHH
T ss_pred             CCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----C-------CcEEEEeCcHHH
Confidence            3468999999987663  788988864322 2333 46899999999999999984    1       569999999999


Q ss_pred             HHHhhCCC-----------CchhHH-HHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhcc
Q psy216          587 LLALKNIM-----------SPNHLV-NNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSS  643 (650)
Q Consensus       587 l~~i~~~~-----------~~~~~~-~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~  643 (650)
                      ++.|+++.           .+.++. .++++.+.++..++..|.|.|||||+|++|||.||+||+.|+.
T Consensus        78 ~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~  146 (150)
T 3qio_A           78 LGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIR  146 (150)
T ss_dssp             HHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHH
Confidence            99998751           222221 3444444444456889999999999999999999999999875
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* Back     alignment and structure
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum} Back     alignment and structure
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ... Back     alignment and structure
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A Back     alignment and structure
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A Back     alignment and structure
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Back     alignment and structure
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A Back     alignment and structure
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* Back     alignment and structure
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus} Back     alignment and structure
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum} Back     alignment and structure
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Back     alignment and structure
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A Back     alignment and structure
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ... Back     alignment and structure
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A Back     alignment and structure
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism} Back     alignment and structure
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A Back     alignment and structure
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Back     alignment and structure
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ... Back     alignment and structure
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A Back     alignment and structure
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A Back     alignment and structure
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus} Back     alignment and structure
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism} Back     alignment and structure
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ... Back     alignment and structure
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Back     alignment and structure
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A Back     alignment and structure
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A* Back     alignment and structure
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A Back     alignment and structure
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A* Back     alignment and structure
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 650
d1mu2a1126 c.55.3.1 (A:430-555) HIV RNase H (Domain of revers 1e-08
d1mu2a1126 c.55.3.1 (A:430-555) HIV RNase H (Domain of revers 5e-05
d1jl1a_152 c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli 2e-05
d1s1ta1110 c.55.3.1 (A:430-539) HIV RNase H (Domain of revers 0.001
d1s1ta1110 c.55.3.1 (A:430-539) HIV RNase H (Domain of revers 0.002
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Length = 126 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

 Score = 51.8 bits (123), Expect = 1e-08
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
           YTDGS  + +      Y+T+      K   + +   +E               +      
Sbjct: 11  YTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAE-----------LEAFAMALTDS 59

Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
              V I  DS+  +  + +  + +   + I+ +I E  I    +   W+P+H GI GN +
Sbjct: 60  GPKVNIIVDSQYVMGIVASQPTESE--SKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQE 117

Query: 318 VDELAK 323
           VD L  
Sbjct: 118 VDHLVS 123
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Length = 126 Back     information, alignment and structure
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Length = 152 Back     information, alignment and structure
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} Length = 110 Back     information, alignment and structure
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query650
d1mu2a1126 HIV RNase H (Domain of reverse transcriptase) {Hum 99.88
d1rila_147 RNase H (RNase HI) {Thermus thermophilus [TaxId: 2 99.85
d1jl1a_152 RNase H (RNase HI) {Escherichia coli [TaxId: 562]} 99.84
d1mu2a1126 HIV RNase H (Domain of reverse transcriptase) {Hum 99.83
d1jl1a_152 RNase H (RNase HI) {Escherichia coli [TaxId: 562]} 99.77
d1rila_147 RNase H (RNase HI) {Thermus thermophilus [TaxId: 2 99.76
d1s1ta1110 HIV RNase H (Domain of reverse transcriptase) {Hum 99.73
d1zbfa1132 BH0863-like Ribonuclease H {Bacillus halodurans [T 99.54
d1s1ta1110 HIV RNase H (Domain of reverse transcriptase) {Hum 99.5
d1zbfa1132 BH0863-like Ribonuclease H {Bacillus halodurans [T 99.05
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=99.88  E-value=5e-23  Score=183.34  Aligned_cols=116  Identities=25%  Similarity=0.339  Sum_probs=87.8

Q ss_pred             CcEEEEECCCCCCC--ceeEEEEEccceeeecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHHHHH
Q psy216          511 NSLFCYTDGSKTAA--NSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLL  588 (650)
Q Consensus       511 ~~~~IyTDgS~~~~--~~G~g~v~~~~~~~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~al~  588 (650)
                      ....||||||+..+  ..|+|+++.............||++|||+||++||+..    .       .++.|+|||+++++
T Consensus         6 ~~~t~YTDGS~~~n~~~~~~g~~~~~~~~~~~~~~~~tnn~AEl~Ai~~al~~~----~-------~~i~I~tDS~~v~~   74 (126)
T d1mu2a1           6 GAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMALTDS----G-------PKVNIIVDSQYVMG   74 (126)
T ss_dssp             TCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEESSCCHHHHHHHHHHHHHHTS----C-------SEEEEEESCHHHHH
T ss_pred             CCcEEEEcCCCCCCCCcEEEEEEecCCCEEEEecCCCcchHHHHHHHHHHhccC----C-------cceEEEechHHHHH
Confidence            45789999998655  35677777755444333446799999999999999752    1       67999999999999


Q ss_pred             HhhCCCC--chhHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhh
Q psy216          589 ALKNIMS--PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILK  641 (650)
Q Consensus       589 ~i~~~~~--~~~~~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~  641 (650)
                      .++++..  ......   +.+..+.. ...|.|.|||||+|++|||.||+||+.|
T Consensus        75 ~~~~~~~~~~~~~~~---~~~~~~~~-~~~v~~~wV~gH~g~~gNe~AD~LA~~a  125 (126)
T d1mu2a1          75 IVASQPTESESKIVN---QIIEEMIK-KEAIYVAWVPAHKGIGGNQEVDHLVSQG  125 (126)
T ss_dssp             HHHTCCSEESCHHHH---HHHHHHHH-CSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred             HHhcCCccccchHHH---HHHHHhhh-cceeEEEEEeCCCCCcchHHHHHHHHhh
Confidence            9998762  222322   22333433 4689999999999999999999999976
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure