Psyllid ID: psy2549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MDGLFNATDLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRRVTADDPCEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHcccccccccccHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccHHHHHHccccccccccccccEEEEEEccccccccEEEEEEccEEEEEcccEEEEccccccccccccEEEEEccccEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccHHHccHHccccccccccccccccEEEEEEEEcccccEEEccccccccccccccEEEEEEccccccccEEEEEEEEEEEEccccEEEEcccccccccccccEEEccccEEEEEEEEEEEcccEEcc
Coil and Loop (DISEMBL)
mdglfnatdlQNLSNLLnqggnnndsdseeemcstsgrkkvggasrhapenprfkvnirrvtaddpceesgpsngkgdsaktdeeddkwaiwnkdevpsmdtlpddanldpritpeydimyqqsvtSEDIYlqmggktpssvscEDMLVTIqlpgeqrenvdcdlttqhvdirSIKYrlalplphpvlphlcqatwdsDKFELKLTLRLTREFDCVNF
Flexible Loop (DISEMBL)
MDGLFNATDLQNLSNLLNQGGNNNDSDSEEEMCSTSgrkkvggasrhapenprfkvnirrvtaddpceesgpsngkgdsaktdeedDKWAIWnkdevpsmdtlpddaNLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQlpgeqrenvdcDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLrltrefdcvnf
Low Complexity Region (SEG)
MDGLFNATdlqnlsnllnqggnnndsdsEEEMCSTSGRKKVGGASRHAPENPRFKVNIRRVTADDPCEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLAlplphpvlphlCQATWDSDKFELKLTLRLTREFDCVNF
Disordered region (IsUnstruct)
****************************************************************************************WAIW********************ITPEYDIMYQQSVTSEDIYLQMGGK***SVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCV**
Disordered Region (DISOPRED)
*****NATDLQNLSNL************************************************************************************************ITPEYDIMYQQSVTSEDIYLQM*********CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF
Disordered Region (DISEMBL)
MDGLFNATDLQNLSNLLNQGG****************************ENPRFKVNIRRVTA**********************DDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF
Disordered Region (DISPRO)
****FNAT*LQ*LSNLLNQ************************************************************************WN*DEVPSMD*LPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGLFNATDLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRRVTADDPCEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q9NQM4	214	Protein PIH1D3 OS=Homo sa	yes	N/A	0.605	0.616	0.298	1e-12

>sp|Q9NQM4|PIHD3_HUMAN Protein PIH1D3 OS=Homo sapiens GN=PIH1D3 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 2/134 (1%)

Query: 85  EDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSC 144
           E++   IWN +E+P  +    D   D R  PEY+I+++Q V +EDI+L +  K  S+  C
Sbjct: 82  EENNEDIWNSEEIP--EGAEYDDMWDVREIPEYEIIFRQQVGTEDIFLGLSKKDSSTGCC 139

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELK 204
            +++  I+LP     ++  D+    +D+R+ + +L + LP  V     +A +  +   L+
Sbjct: 140 SELVAKIKLPNTNPSDIQIDIQETILDLRTPQKKLLITLPELVECTSAKAFYIPETETLE 199

Query: 205 LTLRLTREFDCVNF 218
           +T+ + RE D  NF
Sbjct: 200 ITMTMKRELDIANF 213

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
322792663	192	hypothetical protein SINV_06329 [Solenop	0.866	0.984	0.389	4e-31
291223491	190	PREDICTED: hypothetical protein [Saccogl	0.830	0.952	0.387	2e-30
332030531	195	Uncharacterized protein CXorf41 [Acromyr	0.880	0.984	0.380	3e-29
350401468	191	PREDICTED: uncharacterized protein CXorf	0.871	0.994	0.378	9e-28
340729080	191	PREDICTED: uncharacterized protein CXorf	0.871	0.994	0.378	2e-27
198431063	196	PREDICTED: similar to SJCHGC08782 protei	0.853	0.948	0.382	3e-27
307200231	192	Uncharacterized protein CXorf41 [Harpegn	0.880	1.0	0.376	1e-26
260806783	192	hypothetical protein BRAFLDRAFT_119143 [	0.577	0.656	0.476	5e-26
390370930	188	PREDICTED: uncharacterized protein CXorf	0.577	0.670	0.460	2e-25
390336379	188	PREDICTED: uncharacterized protein CXorf	0.577	0.670	0.460	2e-25

>gi|322792663|gb|EFZ16537.1| hypothetical protein SINV_06329 [Solenopsis invicta]

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 124/221 (56%), Gaps = 32/221 (14%)

Query: 1   MDGLFNATDLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MDG F   DL+ L NL+      +DSD E+++   +G +K+G A   AP           
Sbjct: 1   MDGCFRPGDLEALQNLICP--PKDDSDIEDDL-PQAGARKLGPADIGAP----------- 46

Query: 61  VTADDPCEESGPS---NGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEY 117
            + +   E +GP     G GD            IW+  E   + +L D    DPR  PEY
Sbjct: 47  -SVESSQERAGPHASLQGAGDD-----------IWHPSETVDIRSLQD---YDPRKAPEY 91

Query: 118 DIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKY 177
           ++ ++Q+VT+ED+YL +G KTPS+ SCE + V ++LP E RE V+  + ++ +D+RS +Y
Sbjct: 92  EMKFKQAVTAEDVYLGIGFKTPSTASCEWLSVLVKLPEETREKVELSVESEAIDVRSPRY 151

Query: 178 RLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF 218
           RL LP PHPV P+   A W +D   L++TLRLTRE D VNF
Sbjct: 152 RLHLPTPHPVDPNASSAKWHNDTSTLEVTLRLTRELDNVNF 192

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291223491|ref|XP_002731743.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 118/209 (56%), Gaps = 28/209 (13%)

Query: 9   DLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRRVTADDPCE 68
           ++  L+NLL Q    ++ DS ++    +   K+G AS                    P +
Sbjct: 9   NINQLANLLKQ----DEGDSSDDDQPVNATAKLGPASIG------------------PVK 46

Query: 69  ESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSE 128
           +  P+N     AK D +D    IW+ DEV       D    DPR  PEYDI+Y+Q++T+E
Sbjct: 47  QKAPTNKAHSDAKKDSKD----IWDVDEVEEGAEFEDLD--DPRPQPEYDIVYKQAITTE 100

Query: 129 DIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVL 188
           D++LQMG K P++ SCEDM+V I LP  ++ +VD ++T + +DIRS K++L L LPHPV 
Sbjct: 101 DMFLQMGNKNPTTSSCEDMVVKINLPNTKKSDVDLNVTDKFLDIRSPKFKLGLHLPHPVD 160

Query: 189 PHLCQATWDSDKFELKLTLRLTREFDCVN 217
                A WD+DK  L +TLR+ REFD +N
Sbjct: 161 SKTGSAKWDADKELLIITLRMKREFDFIN 189

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|332030531|gb|EGI70219.1| Uncharacterized protein CXorf41 [Acromyrmex echinatior]

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 29/221 (13%)

Query: 1   MDGLFNATDLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MDG F+  DLQ L NL+     + D    E+    +G +K+G     AP +         
Sbjct: 1   MDGCFSPADLQALQNLI---CPSKDDSDSEDDLPQAGARKLGPGDIGAPSD--------- 48

Query: 61  VTADDPCEESGPS---NGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEY 117
           ++ D     SGP      KGD            IW+  E     +L D    DPR +PEY
Sbjct: 49  LSQDSSQNRSGPHAPLQSKGDD-----------IWHPSEAVDTQSLQD---YDPRESPEY 94

Query: 118 DIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKY 177
           ++ ++Q+VT+ED+YL MG KTPS+ SCE + V ++LP E RE V+  + ++ +D+RS +Y
Sbjct: 95  EMKFKQAVTAEDVYLGMGFKTPSTASCEWLSVLVKLPQETREKVELSVESEAIDVRSPRY 154

Query: 178 RLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF 218
           RL LP PH V P+   A W SD   L++TL+LTRE D +NF
Sbjct: 155 RLHLPTPHSVDPNASSAKWHSDTSTLEVTLKLTRELDNINF 195

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401468|ref|XP_003486162.1| PREDICTED: uncharacterized protein CXorf41-like [Bombus impatiens]

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 118/219 (53%), Gaps = 29/219 (13%)

Query: 1   MDGLFNATDLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MDG F   +L+ L  L+N     NDSDSE+++     RK   G       N +F+     
Sbjct: 1   MDGCFGYHELKALQELINP--LKNDSDSEDDLPQAGARKL--GPGDIGTRNGKFQ----- 51

Query: 61  VTADDPCEESGPSNGKGDSAKTDEEDDKWAIWNKDE-VPSMDTLPDDANLDPRITPEYDI 119
                  + SGP      +    E DD   IW+  E V S  T       DPR  P+Y++
Sbjct: 52  -------DRSGPH-----APLKAEVDD---IWHPSEAVASQST----EAYDPRKVPDYEM 92

Query: 120 MYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRL 179
            ++Q+VT+ED++L MG KTP + SCE + V +++P E RE ++  + T+ +D+RS +YRL
Sbjct: 93  KFKQAVTAEDVFLGMGFKTPGTASCEWLSVLVKMPQEVREKIELSVETEAIDVRSPRYRL 152

Query: 180 ALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF 218
            L  PHPV P+   A W SD   L++TLRL RE D VNF
Sbjct: 153 HLETPHPVDPNASSAKWHSDISTLEVTLRLVRELDGVNF 191

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729080|ref|XP_003402836.1| PREDICTED: uncharacterized protein CXorf41-like [Bombus terrestris]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 117/219 (53%), Gaps = 29/219 (13%)

Query: 1   MDGLFNATDLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MDG F   +L+ L  L+N     NDSDSE+++     RK   G       N +F+     
Sbjct: 1   MDGCFGYHELKALQELINP--LKNDSDSEDDLPQAGARK--FGPGDIGTRNEKFQ----- 51

Query: 61  VTADDPCEESGPSNGKGDSAKTDEEDDKWAIWNKDE-VPSMDTLPDDANLDPRITPEYDI 119
                  + SGP      +    E DD   IW+  E V S  T       DPR  PEY++
Sbjct: 52  -------DRSGPH-----APLKAEADD---IWHPSEAVASQST----EAYDPRKVPEYEM 92

Query: 120 MYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRL 179
            ++Q+VT+ED++L MG KTP + SCE + V +++P E  E ++  + T+ +D+RS +YRL
Sbjct: 93  KFKQAVTAEDVFLGMGFKTPGTASCEWLSVLVKMPQEVCEKIELSVETEAIDVRSPRYRL 152

Query: 180 ALPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF 218
            L  PHPV P+   A W SD   L++TLRL RE D VNF
Sbjct: 153 HLETPHPVDPNASSAKWHSDISSLEVTLRLVRELDGVNF 191

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198431063|ref|XP_002127097.1| PREDICTED: similar to SJCHGC08782 protein [Ciona intestinalis]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 115/212 (54%), Gaps = 26/212 (12%)

Query: 7   ATDLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRRVTADDP 66
           A DL NLS++LN+    +D +   +  + S      G        P  K +++++     
Sbjct: 10  AQDLLNLSSMLNREKEASDDEDTPDSSTPSLTPASIG--------PNSKKSLKKI----- 56

Query: 67  CEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVT 126
                    K   AK   E D   IWN+DEV   +    +   DPR  P+YDI Y+Q VT
Sbjct: 57  ---------KTPYAKV--ESDPNIIWNEDEVKESNIFAVEP--DPRPQPKYDISYKQKVT 103

Query: 127 SEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHP 186
           SED++L M GK PS+  CEDM+V I+LPG   ++V+ D+    +D RS K+RL L LPHP
Sbjct: 104 SEDMFLGMSGKNPSTACCEDMIVKIELPGCNMKDVELDVKQTTLDCRSPKFRLLLALPHP 163

Query: 187 VLPHLCQATWDSDKFELKLTLRLTREFDCVNF 218
           V P    A WD +K  L++TL ++RE+D VNF
Sbjct: 164 VDPKKGSAKWDGNKQILQVTLTMSREYDFVNF 195

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307200231|gb|EFN80525.1| Uncharacterized protein CXorf41 [Harpegnathos saltator]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 114/218 (52%), Gaps = 26/218 (11%)

Query: 1   MDGLFNATDLQNLSNLLNQGGNNNDSDSEEEMCSTSGRKKVGGASRHAPENPRFKVNIRR 60
           MDG F   DL+ L NL+       D    E+    +G + +G AS  AP     +V+   
Sbjct: 1   MDGCFGPRDLEALRNLICP---PEDDPDVEDDLPQAGARNLGPASIGAPSTEVSQVH--- 54

Query: 61  VTADDPCEESGPSNGKGDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRITPEYDIM 120
                           G  A     DD   IW+  E  ++DT     + D R  PEY++ 
Sbjct: 55  ---------------PGPHAPLRGADDD--IWHPSE--AIDTQ-SSQDYDLRTVPEYEMK 94

Query: 121 YQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLA 180
           ++Q+VT+EDIYL MG KTP + SCE + V ++LP E RE V+  + ++ +D+RS +YRL 
Sbjct: 95  FKQAVTAEDIYLGMGFKTPGTASCEWLSVLVKLPRETREKVELSVESEAIDVRSSRYRLH 154

Query: 181 LPLPHPVLPHLCQATWDSDKFELKLTLRLTREFDCVNF 218
           LP PHPV P+   A W SD   L++ LRL RE D VNF
Sbjct: 155 LPTPHPVDPNASSAKWHSDTSTLEINLRLVRELDNVNF 192

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260806783|ref|XP_002598263.1| hypothetical protein BRAFLDRAFT_119143 [Branchiostoma floridae] gi|229283535|gb|EEN54275.1| hypothetical protein BRAFLDRAFT_119143 [Branchiostoma floridae]

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 87/128 (67%), Gaps = 2/128 (1%)

Query: 91  IWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVT 150
           IW+++EV +     D   LDPR  PEYD++++Q+VTSED++LQMG K  SS SCEDM+V 
Sbjct: 67  IWDEEEVATGAEYED--VLDPRPQPEYDVVFKQAVTSEDMFLQMGNKNLSSASCEDMVVK 124

Query: 151 IQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLT 210
           I+LPG +   V+ D+T + +D R+ KY+L L LPHPV     +A W  D+  L +TLR+ 
Sbjct: 125 IKLPGHKSSEVELDVTDKFLDCRTPKYKLGLHLPHPVDSKNGRAQWVQDQEMLVVTLRMV 184

Query: 211 REFDCVNF 218
           R+ D +NF
Sbjct: 185 RDLDFINF 192

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390370930|ref|XP_003731928.1| PREDICTED: uncharacterized protein CXorf41-like [Strongylocentrotus purpuratus]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 87/128 (67%), Gaps = 2/128 (1%)

Query: 91  IWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVT 150
           IW+ + V       D    DPR  PEYDI+++Q+V+SED++LQMG KTP++ SCED++V 
Sbjct: 63  IWDAEAVTEGSEFED--IYDPRPEPEYDIIFKQAVSSEDMFLQMGRKTPATSSCEDLVVK 120

Query: 151 IQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLT 210
           I+LPG +  +V+ D+  + +D R+  ++L L LPHPV     +A WD DK  L +TL++T
Sbjct: 121 IKLPGVKYADVELDVKDKFLDCRTPNHKLGLHLPHPVDSKNGRAKWDGDKEILTVTLKMT 180

Query: 211 REFDCVNF 218
           RE+D VNF
Sbjct: 181 REYDFVNF 188

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390336379|ref|XP_003724337.1| PREDICTED: uncharacterized protein CXorf41-like isoform 2 [Strongylocentrotus purpuratus]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 87/128 (67%), Gaps = 2/128 (1%)

Query: 91  IWNKDEVPSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVT 150
           IW+ + V       D    DPR  PEYDI+++Q+V+SED++LQMG KTP++ SCED++V 
Sbjct: 63  IWDAEAVTEGSEFED--IYDPRPEPEYDIIFKQAVSSEDMFLQMGRKTPATSSCEDLVVK 120

Query: 151 IQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLT 210
           I+LPG +  +V+ D+  + +D R+  ++L L LPHPV     +A WD DK  L +TL++T
Sbjct: 121 IKLPGVKYADVELDVKDKFLDCRTPNHKLGLHLPHPVDSKNGRAKWDGDKEILTVTLKMT 180

Query: 211 REFDCVNF 218
           RE+D VNF
Sbjct: 181 REYDFVNF 188

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	1e-06
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	4e-04

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSD 199
           +++ +TI L    +++V  + T + + +        +Y L   L  P+ P   + T +  
Sbjct: 6   DEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDR 65

Query: 200 KFELKLT 206
           K E+ L 
Sbjct: 66  KIEITLK 72

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 12/73 (16%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIR------------SIKYRLALPLPHPVLPHLC 192
           ++++VT+ LPG ++E++  ++    + I               ++  +  LP  V P   
Sbjct: 6   DEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKS 65

Query: 193 QATWDSDKFELKL 205
           +A+ ++   E+ L
Sbjct: 66  KASLENGVLEITL 78

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	99.86
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.23
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.23
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.19
COG0071	146	IbpA Molecular chaperone (small heat shock protein	99.18
PRK11597	142	heat shock chaperone IbpB; Provisional	99.17
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.17
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.15
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.15
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.13
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	99.13
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.11
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.11
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.09
PRK10743	137	heat shock protein IbpA; Provisional	99.08
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.07
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.06
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.0
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	99.0
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	98.98
cd00298	80	ACD_sHsps_p23-like This domain family includes the	98.94
cd06463	84	p23_like Proteins containing this p23_like domain	98.73
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	98.46
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	98.38
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	98.01
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	98.01
KOG0710|consensus	196		97.77
KOG4356|consensus	310		97.66
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	97.63
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	97.56
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	97.44
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	97.31
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	97.04
cd06488	87	p23_melusin_like p23_like domain similar to the C-	96.6
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	96.55
KOG3591|consensus	173		96.28
KOG1309|consensus	196		95.8
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	95.64
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	95.43
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.78
KOG3247|consensus	466		94.77
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	94.55
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	93.95

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=99.86  E-value=5.5e-21  Score=170.48  Aligned_cols=98  Identities=37%  Similarity=0.558  Sum_probs=91.5

Q ss_pred             CCCCCCeEEEEEEeeccchhhhhccCCCCCCCCCCCcEEEEEEcCCCC-CCcceEEEeCCEEEEEecc--eEEEcCCCCC
Q psy2549         110 DPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQ-RENVDCDLTTQHVDIRSIK--YRLALPLPHP  186 (218)
Q Consensus       110 d~r~~PeY~i~ykq~V~teDvflgm~~k~Pss~~~e~LvV~I~LPg~~-~~dI~LdV~e~~L~L~s~k--Y~L~l~LP~p  186 (218)
                      ..+..|+|+|+|++.|+++|++++++. + +++.|+.|+|+|+||++. .++|+|+|+++.|.|.++.  |+|+|+|||+
T Consensus       228 ~~~~~P~y~i~~~~~v~~~~~~~~~~~-~-~~~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~  305 (328)
T PF08190_consen  228 PDPPKPEYSIVYRQQVDLEDVRDSSDS-D-SSGSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYP  305 (328)
T ss_pred             ccccCCcceEEeeccceeeeeeccccC-C-cCCCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCc
Confidence            458899999999999999999998444 4 678999999999999996 9999999999999999876  9999999999


Q ss_pred             ccCCCeeeEEECCCcEEEEEEec
Q psy2549         187 VLPHLCQATWDSDKFELKLTLRL  209 (218)
Q Consensus       187 Vd~d~~kAkfd~~~g~L~VTLpv  209 (218)
                      |+.+.|+|+|++++++|+|||||
T Consensus       306 V~~~~~~Akf~~~~~~L~vtlpV  328 (328)
T PF08190_consen  306 VDEDNGKAKFDKKTKTLTVTLPV  328 (328)
T ss_pred             ccCCCceEEEccCCCEEEEEEEC
Confidence            99999999999999999999996

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=99.23  E-value=2.5e-11  Score=91.38  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCcE
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKFE  202 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~-~L~L~s~--------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~  202 (218)
                      .+.++|.++|||+++++|+|+|.++ .|.|++.                    .|.+.+.||..|+.++++|+|.+  |+
T Consensus         8 ~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~n--Gv   85 (92)
T cd06472           8 PEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLEN--GV   85 (92)
T ss_pred             CCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEEC--CE
Confidence            4799999999999999999999975 8999762                    47889999999999999999999  99


Q ss_pred             EEEEEec
Q psy2549         203 LKLTLRL  209 (218)
Q Consensus       203 L~VTLpv  209 (218)
                      |+|+||+
T Consensus        86 L~I~lPK   92 (92)
T cd06472          86 LTVTVPK   92 (92)
T ss_pred             EEEEecC
Confidence            9999995

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=99.23  E-value=2.5e-11  Score=91.18  Aligned_cols=65  Identities=11%  Similarity=0.146  Sum_probs=60.4

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEEE-CCCcEEEEEEec
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATWD-SDKFELKLTLRL  209 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~k-------------Y~L~l~LP~pVd~d~~kAkfd-~~~g~L~VTLpv  209 (218)
                      .+.++|+++|||+++++|+|.|.++.|.|++.+             |.+.+.||..||.++++|+|. +  |+|+|+||+
T Consensus         6 ~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~d--GvL~I~lPk   83 (84)
T cd06498           6 KDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPD--GVLTVCGPR   83 (84)
T ss_pred             CceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCC--CEEEEEEeC
Confidence            478999999999999999999999999998742             889999999999999999995 8  999999997


Q ss_pred             c
Q psy2549         210 T  210 (218)
Q Consensus       210 ~  210 (218)
                      +
T Consensus        84 ~   84 (84)
T cd06498          84 K   84 (84)
T ss_pred             C
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=99.19  E-value=5.3e-11  Score=89.68  Aligned_cols=65  Identities=11%  Similarity=0.118  Sum_probs=60.1

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATW-DSDKFELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~k-------------Y~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.+.|.++|||+++++|+|.|.++.|.|++.+             |++.+.||..|+.+.++|+| .+  |+|+|++|
T Consensus         8 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~d--GvL~I~~P   85 (86)
T cd06497           8 DRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSAD--GMLTFSGP   85 (86)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCC--CEEEEEec
Confidence            4579999999999999999999999999998742             88999999999999999999 68  99999999


Q ss_pred             c
Q psy2549         209 L  209 (218)
Q Consensus       209 v  209 (218)
                      +
T Consensus        86 K   86 (86)
T cd06497          86 K   86 (86)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=7.6e-11  Score=96.00  Aligned_cols=65  Identities=23%  Similarity=0.446  Sum_probs=60.5

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCcEEE
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKFELK  204 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~--------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~  204 (218)
                      +.++|.++|||+++++|+|.+.++.|.|++.                    .|++.+.||..|+++.++|+|.+  |+|+
T Consensus        50 ~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~n--GvL~  127 (146)
T COG0071          50 DEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKN--GLLT  127 (146)
T ss_pred             CEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeC--cEEE
Confidence            5999999999999999999999999999763                    37799999999999999999999  9999


Q ss_pred             EEEeccc
Q psy2549         205 LTLRLTR  211 (218)
Q Consensus       205 VTLpv~R  211 (218)
                      |+||+..
T Consensus       128 I~lpk~~  134 (146)
T COG0071         128 VTLPKAE  134 (146)
T ss_pred             EEEeccc
Confidence            9999854

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=99.17  E-value=1e-10  Score=96.27  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=57.4

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEE
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKFELKLT  206 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VT  206 (218)
                      +.++|+++|||+++++|+|+|.++.|+|++.                  .|.+.+.||..|+.+  +|+|.+  |+|+|+
T Consensus        43 ~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n--GVL~I~  118 (142)
T PRK11597         43 NHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN--GLLHID  118 (142)
T ss_pred             CEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC--CEEEEE
Confidence            5799999999999999999999999999874                  378999999999998  799999  999999


Q ss_pred             Eecc
Q psy2549         207 LRLT  210 (218)
Q Consensus       207 Lpv~  210 (218)
                      ||+.
T Consensus       119 lPK~  122 (142)
T PRK11597        119 LIRN  122 (142)
T ss_pred             Eecc
Confidence            9985

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=99.17  E-value=7.6e-11  Score=88.11  Aligned_cols=65  Identities=14%  Similarity=0.160  Sum_probs=59.5

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|.++|||+++++|+|.+.++.|.|++.             .|.+.+.||..|+.+.++|+| .+  |+|+|++|
T Consensus         5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~d--GvL~I~~P   82 (83)
T cd06478           5 DKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSAD--GVLTISGP   82 (83)
T ss_pred             cCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCC--CEEEEEec
Confidence            347899999999999999999999999999873             288999999999999999999 58  99999999


Q ss_pred             c
Q psy2549         209 L  209 (218)
Q Consensus       209 v  209 (218)
                      +
T Consensus        83 K   83 (83)
T cd06478          83 R   83 (83)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=99.15  E-value=8.6e-11  Score=88.54  Aligned_cols=65  Identities=14%  Similarity=0.145  Sum_probs=60.3

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCcEEEEEEe
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKFELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd-~~~g~L~VTLp  208 (218)
                      ..+.++|+++|||+++++|+|.|.++.|.|++.             .|++.+.||..|+.++.+|+|. +  |+|+|+||
T Consensus         8 ~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~d--GvL~I~lP   85 (86)
T cd06475           8 TADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPD--GILTVEAP   85 (86)
T ss_pred             cCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCC--CeEEEEec
Confidence            347999999999999999999999999999874             2899999999999999999997 8  99999999


Q ss_pred             c
Q psy2549         209 L  209 (218)
Q Consensus       209 v  209 (218)
                      +
T Consensus        86 ~   86 (86)
T cd06475          86 I   86 (86)
T ss_pred             C
Confidence            6

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.15  E-value=1.2e-10  Score=86.25  Aligned_cols=66  Identities=17%  Similarity=0.242  Sum_probs=60.9

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEec
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRL  209 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv  209 (218)
                      .++.++|.++|||+++++|+|.|.++.|.|++.             .|++.+.||..|+++.++|+|.+ .|+|+|++|+
T Consensus         5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~-~GvL~I~~Pk   83 (83)
T cd06526           5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSS-DGVLTIEAPK   83 (83)
T ss_pred             cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCC-CcEEEEEecC
Confidence            447999999999999999999999999999763             58899999999999999999987 5999999995

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=99.13  E-value=2e-10  Score=86.33  Aligned_cols=65  Identities=12%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCcEEEEEEe
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKFELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd-~~~g~L~VTLp  208 (218)
                      ..+.+.|.++|||+++++|+|.|.++.|.|++.             .|++.+.||..|+++.++|+|. +  |+|+|++|
T Consensus         5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~d--GvL~I~~P   82 (83)
T cd06476           5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHD--GILCIQAP   82 (83)
T ss_pred             cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCC--CEEEEEec
Confidence            347899999999999999999999999999874             2789999999999999999996 8  99999999


Q ss_pred             c
Q psy2549         209 L  209 (218)
Q Consensus       209 v  209 (218)
                      +
T Consensus        83 r   83 (83)
T cd06476          83 R   83 (83)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=99.13  E-value=1.6e-10  Score=86.79  Aligned_cols=64  Identities=23%  Similarity=0.362  Sum_probs=57.3

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------------------ceEEEcCCCCCccCCCeeeEEECCC
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------------------KYRLALPLPHPVLPHLCQATWDSDK  200 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~----------------------kY~L~l~LP~pVd~d~~kAkfd~~~  200 (218)
                      ..+.++|.++|||+++++|+|.+.++.|.|++.                      .|.+.+.|| .|+.+.++|+|++  
T Consensus         8 ~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~~d--   84 (93)
T cd06471           8 TDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKYEN--   84 (93)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEEEC--
Confidence            347999999999999999999999999999542                      367889999 7999999999999  


Q ss_pred             cEEEEEEec
Q psy2549         201 FELKLTLRL  209 (218)
Q Consensus       201 g~L~VTLpv  209 (218)
                      |+|+|+||+
T Consensus        85 GvL~I~lPK   93 (93)
T cd06471          85 GVLKITLPK   93 (93)
T ss_pred             CEEEEEEcC
Confidence            999999995

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.11  E-value=2.3e-10  Score=82.75  Aligned_cols=64  Identities=22%  Similarity=0.351  Sum_probs=59.8

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-------------------cceEEEcCCCCCccCCCeeeEEECCCcEEE
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-------------------IKYRLALPLPHPVLPHLCQATWDSDKFELK  204 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-------------------~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~  204 (218)
                      .+.++|.|+|||+..++|+|.+.++.|.|++                   ..|++.+.||..|+.+.++|.|.+  |+|+
T Consensus         6 ~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~--G~L~   83 (88)
T cd06464           6 DDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN--GVLT   83 (88)
T ss_pred             CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC--CEEE
Confidence            4799999999999999999999999999983                   358999999999999999999999  9999


Q ss_pred             EEEec
Q psy2549         205 LTLRL  209 (218)
Q Consensus       205 VTLpv  209 (218)
                      |++|+
T Consensus        84 I~~pk   88 (88)
T cd06464          84 ITLPK   88 (88)
T ss_pred             EEEcC
Confidence            99985

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.11  E-value=5.1e-10  Score=80.74  Aligned_cols=68  Identities=21%  Similarity=0.211  Sum_probs=63.7

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      ..+.++|+|.|||++.+++++.++...|.++...|.+.+.||++|+++.++|++.+  |.|+|+|++..+
T Consensus         4 t~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~--~~l~i~L~K~~~   71 (78)
T cd06469           4 TDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGN--GVLVFTLVKKEP   71 (78)
T ss_pred             cCCEEEEEEEeCCCccccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEEeC--CEEEEEEEeCCC
Confidence            34789999999999999999999999999999999999999999999999999999  999999999754

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=99.09  E-value=3.2e-10  Score=85.06  Aligned_cols=64  Identities=11%  Similarity=0.222  Sum_probs=59.8

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~----------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|.++|||+++++|++.|.++.|.|++.          .|.+.+.||..||+++++|+| .+  |+|+|+++
T Consensus         6 ~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~--GvL~I~~~   80 (81)
T cd06479           6 LGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGED--GTLTIKAR   80 (81)
T ss_pred             cCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCC--CEEEEEec
Confidence            458999999999999999999999999999874          588999999999999999997 88  99999987

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>PRK10743 heat shock protein IbpA; Provisional

Probab=99.08  E-value=3.2e-10  Score=92.65  Aligned_cols=63  Identities=10%  Similarity=0.120  Sum_probs=57.8

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCcEEEE
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKFELKL  205 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~V  205 (218)
                      .++++|+++|||+++++|+|+|.++.|+|++.                  .|.+.+.||..|+.+  +|+|.+  |+|+|
T Consensus        44 ~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~~d--GVL~I  119 (137)
T PRK10743         44 ENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANLVN--GLLYI  119 (137)
T ss_pred             CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEEeC--CEEEE
Confidence            37899999999999999999999999999863                  377899999999998  499999  99999


Q ss_pred             EEecc
Q psy2549         206 TLRLT  210 (218)
Q Consensus       206 TLpv~  210 (218)
                      +||+.
T Consensus       120 ~lPK~  124 (137)
T PRK10743        120 DLERV  124 (137)
T ss_pred             EEeCC
Confidence            99985

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=99.07  E-value=3.1e-10  Score=85.66  Aligned_cols=64  Identities=14%  Similarity=0.201  Sum_probs=58.9

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----------------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEE
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----------------KYRLALPLPHPVLPHLCQATW-DSDKFELKL  205 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-----------------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~V  205 (218)
                      .+.++|.++|||+++++|+|.|.++.|.|++.                 .|++.+.||..|+.+.++|.| .+  |+|+|
T Consensus         6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~d--GvL~I   83 (87)
T cd06481           6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPS--GHLHI   83 (87)
T ss_pred             cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCC--ceEEE
Confidence            47899999999999999999999999999763                 277999999999999999999 78  99999


Q ss_pred             EEec
Q psy2549         206 TLRL  209 (218)
Q Consensus       206 TLpv  209 (218)
                      ++|.
T Consensus        84 ~~P~   87 (87)
T cd06481          84 RAPR   87 (87)
T ss_pred             EcCC
Confidence            9983

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=99.06  E-value=5.2e-10  Score=84.33  Aligned_cols=60  Identities=12%  Similarity=0.271  Sum_probs=55.8

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEe-------------------cceEEEcCCCCCccCCCeeeEEECCCcEEEE
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRS-------------------IKYRLALPLPHPVLPHLCQATWDSDKFELKL  205 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-------------------~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~V  205 (218)
                      +.++|+++|||+++++|+|.+.++.|.|++                   ..|.+.+.||..|+..  +|+|.+  |+|+|
T Consensus        11 ~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~~--GvL~I   86 (90)
T cd06470          11 NNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELEN--GLLTI   86 (90)
T ss_pred             CeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEeC--CEEEE
Confidence            689999999999999999999999999994                   3588999999999875  899999  99999


Q ss_pred             EEe
Q psy2549         206 TLR  208 (218)
Q Consensus       206 TLp  208 (218)
                      +|+
T Consensus        87 ~l~   89 (90)
T cd06470          87 DLE   89 (90)
T ss_pred             EEE
Confidence            997

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=99.00  E-value=1.1e-09  Score=83.32  Aligned_cols=63  Identities=13%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEe
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLR  208 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~----------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLp  208 (218)
                      +.++|+++|||+++++|+|.|.++.|.|++.                .|++.|.||..|+.++++|+|.+ .|+|+|.-|
T Consensus         8 ~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~-~~~l~i~~~   86 (87)
T cd06482           8 SNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGL-GSVVKIETP   86 (87)
T ss_pred             CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcC-CCEEEEeeC
Confidence            8999999999999999999999999999873                26799999999999999999999 349999765

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=99.00  E-value=1.6e-09  Score=81.91  Aligned_cols=69  Identities=19%  Similarity=0.392  Sum_probs=57.2

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCcEEE
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKFELK  204 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~  204 (218)
                      ..+.+.|.++|||+..++|+|.+.++.|.|++.                  .|...+.||..|+.++++|+|.+  |+|+
T Consensus         5 ~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~--GvL~   82 (102)
T PF00011_consen    5 DEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYEN--GVLT   82 (102)
T ss_dssp             SSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETT--SEEE
T ss_pred             CCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecC--CEEE
Confidence            347899999999999999999999999999763                  37889999999999999999966  9999


Q ss_pred             EEEeccccc
Q psy2549         205 LTLRLTREF  213 (218)
Q Consensus       205 VTLpv~Re~  213 (218)
                      |++|+....
T Consensus        83 I~~pk~~~~   91 (102)
T PF00011_consen   83 ITIPKKEEE   91 (102)
T ss_dssp             EEEEBSSSC
T ss_pred             EEEEccccc
Confidence            999998653

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=98.98  E-value=1.8e-09  Score=81.34  Aligned_cols=63  Identities=11%  Similarity=0.043  Sum_probs=57.9

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLR  208 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp  208 (218)
                      .+.++|+++|||+++++|+|.|.++.|.|++.             .|.+.+.||..|+.+.++|+| ++  |+|+|+-+
T Consensus         6 ~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~d--GvL~I~~~   82 (83)
T cd06477           6 KPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHD--GILVVETK   82 (83)
T ss_pred             CceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCC--CEEEEEec
Confidence            47899999999999999999999999999873             378999999999999999998 67  99999865

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=98.94  E-value=3.5e-09  Score=73.19  Aligned_cols=64  Identities=23%  Similarity=0.452  Sum_probs=59.7

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe------------cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEec
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS------------IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRL  209 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s------------~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv  209 (218)
                      .+.+.|+|.||+...+++.+.+.++.|.|++            ..|++.+.||++|+++.++|+|.+  |.|+|+||+
T Consensus         5 ~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~--~~l~i~l~K   80 (80)
T cd00298           5 DDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN--GVLEITLPK   80 (80)
T ss_pred             CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEEC--CEEEEEEcC
Confidence            3789999999999999999999999999983            479999999999999999999999  999999985

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=98.73  E-value=8.7e-08  Score=68.13  Aligned_cols=67  Identities=19%  Similarity=0.325  Sum_probs=61.9

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      .+.+.|.|.+|+...+++.++++++.|.|+.     ..|.+.+.|+++|+++.+++++..  +.|+|+|+++.+
T Consensus         5 ~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~l~i~L~K~~~   76 (84)
T cd06463           5 LDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVED--RKIEITLKKKEP   76 (84)
T ss_pred             ccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeC--CEEEEEEEECCC
Confidence            4789999999999999999999999999985     579999999999999999999988  999999998765

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=98.46  E-value=8.7e-07  Score=68.07  Aligned_cols=71  Identities=17%  Similarity=0.211  Sum_probs=64.0

Q ss_pred             CCCCCCCCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCcEE
Q psy2549         137 KTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKFEL  203 (218)
Q Consensus       137 k~Pss~~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L  203 (218)
                      +.|.+...+.+.|.+++-|.+.+||++.+.++.|.|++.             .|.+.+.||..|+.+.++|.+.. .|+|
T Consensus         7 ~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~-dGvL   85 (91)
T cd06480           7 RNPPPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSP-EGLL   85 (91)
T ss_pred             cCCCCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCC-CCeE
Confidence            456677889999999999999999999999999999763             38899999999999999999993 3999


Q ss_pred             EEEEe
Q psy2549         204 KLTLR  208 (218)
Q Consensus       204 ~VTLp  208 (218)
                      +|++|
T Consensus        86 ~IeaP   90 (91)
T cd06480          86 IIEAP   90 (91)
T ss_pred             EEEcC
Confidence            99988

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=98.38  E-value=2.6e-06  Score=61.84  Aligned_cols=68  Identities=21%  Similarity=0.322  Sum_probs=60.3

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      ..+.+.|.|.+||+..+++.+.++++.|.|+.     ..|.+.+.|.++|+++.+++++..  +.|+|+|++...
T Consensus         5 t~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~vei~L~K~~~   77 (84)
T cd06466           5 TDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLP--TKVEITLKKAEP   77 (84)
T ss_pred             cCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeC--eEEEEEEEcCCC
Confidence            34789999999999999999999999999964     269999999999999988888777  899999998753

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=98.01  E-value=3e-05  Score=66.40  Aligned_cols=64  Identities=31%  Similarity=0.548  Sum_probs=53.4

Q ss_pred             cEEEEEEcCCCCCCc-ceEEEe--CCEEEEEe-cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         146 DMLVTIQLPGEQREN-VDCDLT--TQHVDIRS-IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       146 ~LvV~I~LPg~~~~d-I~LdV~--e~~L~L~s-~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      +++|.++|||+...+ |++.|.  ...|.++. .+|.-++.||.+ ..+..+|+|+|  |+|+|.|....+
T Consensus       103 e~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~~~~krv~L~~~-~~e~~~~t~nN--gILEIri~~~~~  170 (177)
T PF05455_consen  103 ELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGEKYLKRVALPWP-DPEITSATFNN--GILEIRIRRTEE  170 (177)
T ss_pred             cEEEEEeCCCCCcccceeeEeecCCceEEEecCCceEeeEecCCC-ccceeeEEEeC--ceEEEEEeecCC
Confidence            799999999998776 777776  66777764 478899999999 67888999999  999999976543

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=98.01  E-value=5.9e-05  Score=53.20  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=54.8

Q ss_pred             CCcEEEEEEcCCCC--CCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEec
Q psy2549         144 CEDMLVTIQLPGEQ--RENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRL  209 (218)
Q Consensus       144 ~e~LvV~I~LPg~~--~~dI~LdV~e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv  209 (218)
                      .+.+.|.|.+++..  .+++.++++++.|.++..     .|.+.+.|.++|+++.++.+...  +.|+|+|.+
T Consensus         9 ~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~i~i~L~K   79 (79)
T PF04969_consen    9 DDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKD--NKIEITLKK   79 (79)
T ss_dssp             SSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEET--TEEEEEEEB
T ss_pred             CCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEEC--CEEEEEEEC
Confidence            36899999996654  999999999999999853     79999999999999999999988  799999974

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>KOG0710|consensus

Probab=97.77  E-value=3.7e-05  Score=66.09  Aligned_cols=68  Identities=18%  Similarity=0.274  Sum_probs=61.4

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec----------------------ceEEEcCCCCCccCCCeeeEEECC
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI----------------------KYRLALPLPHPVLPHLCQATWDSD  199 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~-~L~L~s~----------------------kY~L~l~LP~pVd~d~~kAkfd~~  199 (218)
                      ..+.+++.++|||+...+|.+++.+. .|.+++.                      .|...+.||..|+.++.+|.|.+ 
T Consensus        92 ~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~n-  170 (196)
T KOG0710|consen   92 SPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEMEN-  170 (196)
T ss_pred             CCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHhhC-
Confidence            56899999999999999999999998 5888763                      27789999999999999999999 


Q ss_pred             CcEEEEEEecccc
Q psy2549         200 KFELKLTLRLTRE  212 (218)
Q Consensus       200 ~g~L~VTLpv~Re  212 (218)
                       |+|+|++|+.-.
T Consensus       171 -GVL~VvvpK~~~  182 (196)
T KOG0710|consen  171 -GVLTVVVPKLEP  182 (196)
T ss_pred             -CeEEEEEecccc
Confidence             999999998765

>KOG4356|consensus

Probab=97.66  E-value=8.2e-06  Score=75.08  Aligned_cols=70  Identities=20%  Similarity=0.317  Sum_probs=65.8

Q ss_pred             CCCCcEEEEEEcCCCC-CCcceEEEeCCEEEEEec-c-eEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         142 VSCEDMLVTIQLPGEQ-RENVDCDLTTQHVDIRSI-K-YRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       142 ~~~e~LvV~I~LPg~~-~~dI~LdV~e~~L~L~s~-k-Y~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      ..+..+.++|+||+.+ +..++|.|+++++.+.+. + |+|.+++|+-++.+.+.|.|+..+..|.||||+.|
T Consensus       237 e~p~~i~~e~~lp~~n~~~~~sl~v~e~ri~i~~~~~~y~l~~~~~~~~~~~~~~a~Fd~~~~al~i~~P~~~  309 (310)
T KOG4356|consen  237 EAPDEIEAEIDLPNYNSMQEFSLLVGEDRIVIETRKQGYRLNLNIPYIIDQDRAPALFDKTTKALHITIPVVR  309 (310)
T ss_pred             cCcchhhhhhhcccchhhhccccccCCcceEeccCccceeeccccccccCcccchhhHHHHHHhhheeccccC
Confidence            4678999999999999 999999999999999875 4 99999999999999999999999999999999986

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=97.63  E-value=0.00036  Score=53.85  Aligned_cols=65  Identities=17%  Similarity=0.320  Sum_probs=57.5

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      ..+.+.|.|.+|++  +++.++++++.|.|+..      .|++.+.|.++|+++.++.++..  +.++|+|.+..
T Consensus         8 t~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~--~kveI~L~K~~   78 (108)
T cd06465           8 RSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTG--RQIEFVLRKKE   78 (108)
T ss_pred             CCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecC--CeEEEEEEECC
Confidence            34689999999998  88999999999999752      39999999999999998888877  88999999875

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=97.56  E-value=0.00074  Score=49.17  Aligned_cols=67  Identities=24%  Similarity=0.336  Sum_probs=56.5

Q ss_pred             CCcEEEEEEcCC-CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCC-cEEEEEEecccc
Q psy2549         144 CEDMLVTIQLPG-EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDK-FELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LPg-~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~-g~L~VTLpv~Re  212 (218)
                      .+.+.|.|.+|. ++.+++.++++++.|.|+..  .|.+...|.++|+++.++  |.-.. ..|.|+|++..+
T Consensus         7 ~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~--w~~~~~~~v~i~L~K~~~   77 (85)
T cd06467           7 LDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDEST--WTLEDGKLLEITLEKRNE   77 (85)
T ss_pred             CCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCE--EEEeCCCEEEEEEEECCC
Confidence            368999999984 67999999999999999865  688899999999999766  44444 789999998754

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=97.44  E-value=0.001  Score=48.90  Aligned_cols=66  Identities=21%  Similarity=0.374  Sum_probs=57.5

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      .+.+.|.|.++++..+++.++++++.|.++.     ..|.+.+.|-++|++++++.+--.  +.++|+|.+..
T Consensus         6 ~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~kiei~L~K~~   76 (84)
T cd06489           6 ESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILS--TKIEIKLKKTE   76 (84)
T ss_pred             CCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeC--cEEEEEEEcCC
Confidence            3679999999999999999999999999975     369999999999999977777765  77999998763

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=97.31  E-value=0.0024  Score=47.45  Aligned_cols=68  Identities=21%  Similarity=0.336  Sum_probs=58.6

Q ss_pred             CCCcEEEEEEcCCCCC---CcceEEEeCCEEEEEe-----cceEEEcC-CCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         143 SCEDMLVTIQLPGEQR---ENVDCDLTTQHVDIRS-----IKYRLALP-LPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~---~dI~LdV~e~~L~L~s-----~kY~L~l~-LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      ..+.+.|.|.+|+...   +++.++++++.|.+..     ..|.+.+. |-++|++++++.+...  +.++|+|.+..+
T Consensus         9 t~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~--~ki~i~L~K~~~   85 (92)
T cd06468           9 SDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKT--DRIVITLAKKKE   85 (92)
T ss_pred             CCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeC--CEEEEEEEeCCC
Confidence            4578999999999875   9999999999999975     25888886 9999999988888766  889999998865

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=97.04  E-value=0.0081  Score=44.50  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=55.7

Q ss_pred             CCCcEEEEEEcC-CCCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         143 SCEDMLVTIQLP-GEQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       143 ~~e~LvV~I~LP-g~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      ..+++.|.|.+| ++..+++.+.++.+.|.+...  ...+...|.++|+++.+.=+... .+.|+|+|.++.+
T Consensus         6 t~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~-~~~l~i~L~K~~~   77 (85)
T cd06493           6 TEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKE-NKSLEVSLIKKDE   77 (85)
T ss_pred             eCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeC-CCEEEEEEEECCC
Confidence            347899999996 888999999999999999753  45688899999999876644433 2469999998764

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=96.60  E-value=0.014  Score=43.57  Aligned_cols=66  Identities=11%  Similarity=0.099  Sum_probs=55.1

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      .+.+.|.|.+.++..+++.+.++++.|.++.     ..|.+.+.|-++|+++..+  |......++|+|.+..
T Consensus         9 ~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~--~~v~~~kvei~L~K~~   79 (87)
T cd06488           9 GSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSS--VNMLPTKVEIKLRKAE   79 (87)
T ss_pred             CCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcE--EEecCcEEEEEEEeCC
Confidence            3679999999999999999999999987642     2699999999999998754  5555599999998864

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=96.55  E-value=0.015  Score=45.52  Aligned_cols=64  Identities=13%  Similarity=0.174  Sum_probs=53.3

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      .+.+.|+|.+|+  ..++.++++++.|.+++     ..|++.|.|=.+|+++.++-+-  ....++|.|.++.
T Consensus        10 ~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v--~~r~ve~~L~K~~   78 (106)
T cd00237          10 RDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKR--TDRSILCCLRKGK   78 (106)
T ss_pred             CCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEe--CCceEEEEEEeCC
Confidence            358999999998  68999999999999986     2599999999999999666554  4478888888764

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>KOG3591|consensus

Probab=96.28  E-value=0.021  Score=48.68  Aligned_cols=68  Identities=13%  Similarity=0.156  Sum_probs=61.2

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEec
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRL  209 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv  209 (218)
                      ..+.+-|.++.-..+.++|.+.+.++.|.|.+.             .|.+++.||.-||++.+++...+ .|+|+|+.|+
T Consensus        70 ~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~-dGvLtI~ap~  148 (173)
T KOG3591|consen   70 DKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSS-DGVLTIEAPK  148 (173)
T ss_pred             CCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCC-CceEEEEccC
Confidence            458899999999999999999999999999874             38899999999999999999987 7999999887


Q ss_pred             cc
Q psy2549         210 TR  211 (218)
Q Consensus       210 ~R  211 (218)
                      .-
T Consensus       149 ~~  150 (173)
T KOG3591|consen  149 PP  150 (173)
T ss_pred             CC
Confidence            64

>KOG1309|consensus

Probab=95.80  E-value=0.028  Score=48.72  Aligned_cols=68  Identities=21%  Similarity=0.306  Sum_probs=58.6

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccccc
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTREF  213 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re~  213 (218)
                      ...++|.|..+++..+++.|+++++.|.+...     -|.|.+.|=|+|.++..+-+--+  ..++|||++.+..
T Consensus        12 ~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~s--tKVEI~L~K~~~i   84 (196)
T KOG1309|consen   12 ETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFS--TKVEITLAKAEII   84 (196)
T ss_pred             CceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeee--eeEEEEeccccch
Confidence            46899999999999999999999999987543     59999999999999988776666  7899999986643

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=95.64  E-value=0.14  Score=38.60  Aligned_cols=68  Identities=9%  Similarity=0.041  Sum_probs=55.2

Q ss_pred             CCcEEEEEEcCC---CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         144 CEDMLVTIQLPG---EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LPg---~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      .+++.|.|.||.   ++++++.++++.+.|.+...  .+.+.-.|.++|+.+.+.=.... .+.|.|+|-+.++
T Consensus         7 ~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wtled-~~~l~i~L~K~~~   79 (87)
T cd06492           7 LSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIED-GKVVTVNLEKINK   79 (87)
T ss_pred             cCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEEEeC-CCEEEEEEEECCC
Confidence            367899999975   67999999999999999864  57899999999999866544332 3589999998854

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=95.43  E-value=0.14  Score=39.19  Aligned_cols=67  Identities=15%  Similarity=0.362  Sum_probs=52.9

Q ss_pred             CCcEEEEEEcCC-CCCCcceEEEeCCEEEEEec-ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         144 CEDMLVTIQLPG-EQRENVDCDLTTQHVDIRSI-KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg-~~~~dI~LdV~e~~L~L~s~-kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      .+++.|+|.||. ++++++.++++.+.|.+... .=.|.=.|...|+++.+.=+... .++|.|+|.+..
T Consensus        14 ~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~~l~G~L~~~I~~destWtled-~k~l~I~L~K~~   82 (93)
T cd06494          14 MDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVVADECTWTLED-RKLIRIVLTKSN   82 (93)
T ss_pred             cCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEEEEcCcccCccCcccCEEEEEC-CcEEEEEEEeCC
Confidence            368999999885 66999999999999999853 22566689999999977655444 345899999874

Little is known about the function of the proteins in this subgroup.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.78  E-value=0.13  Score=47.47  Aligned_cols=65  Identities=25%  Similarity=0.349  Sum_probs=57.6

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      ..++|.|.+.|+..+++.+++.++.|.|+-     ..|.+.+.|=++|+++.++-+--.  ..++|+|.+..
T Consensus       166 ~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~Kiei~l~K~~  235 (356)
T PLN03088        166 EEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLS--TKIEIRLAKAE  235 (356)
T ss_pred             CEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEec--ceEEEEEecCC
Confidence            579999999999999999999999998874     369999999999999998888877  68999997764

>KOG3247|consensus

Probab=94.77  E-value=0.014  Score=56.00  Aligned_cols=66  Identities=18%  Similarity=0.117  Sum_probs=61.3

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccC-CCeeeEEECCCcEEEEEEecc
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLP-HLCQATWDSDKFELKLTLRLT  210 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~kY~L~l~LP~pVd~-d~~kAkfd~~~g~L~VTLpv~  210 (218)
                      +.+.++|..|..+++.+++++.++.+.+.++.|+|++.+|+.|.. ..+.|+|+...|...|.+|+.
T Consensus        13 e~~~L~I~~p~~~a~~le~~a~~nm~~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~   79 (466)
T KOG3247|consen   13 EFCTLIIPRPLNQASKLEIDAAANMASFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKF   79 (466)
T ss_pred             ceEEEEeeccccchhccchhhHhhhhhhccchhHHhhcCcchhhhhccccCccccccceeEEeecCC
Confidence            688999999987899999999999999999999999999999876 788999999999999999984

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=94.55  E-value=0.35  Score=36.23  Aligned_cols=66  Identities=14%  Similarity=0.175  Sum_probs=52.3

Q ss_pred             CcEEEEEEcCCCC--CCcceEEEeCCEEEEEe----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         145 EDMLVTIQLPGEQ--RENVDCDLTTQHVDIRS----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       145 e~LvV~I~LPg~~--~~dI~LdV~e~~L~L~s----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      ..++|.|...+..  ...+.++..++.|.++-    .-|.+.+.|=++|+++. ..++....+.++|+|++..
T Consensus         8 ~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e   79 (87)
T cd06490           8 SEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKE   79 (87)
T ss_pred             CEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCC
Confidence            5889999988654  55566777888888873    35899999999998776 8888876789999999764

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=93.95  E-value=0.6  Score=36.49  Aligned_cols=68  Identities=16%  Similarity=0.186  Sum_probs=52.9

Q ss_pred             CCcEEEEEEcCC-C-CCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         144 CEDMLVTIQLPG-E-QRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LPg-~-~~~dI~LdV~e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      -+++.|+|.||. + +++++.++++.+.|.+...     .-.|.=.|..+|+.+.+.=.... ...|.|+|-+.++
T Consensus        13 l~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled-~~~l~I~L~K~~~   87 (102)
T cd06495          13 YTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEP-GKCVLLSLSKCSE   87 (102)
T ss_pred             CCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeC-CCEEEEEEEECCC
Confidence            378999999996 3 5899999999999998753     23588889999999866544332 3568999988754

Little is known about the function of the proteins in this subgroup.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	3e-04
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	6e-04

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSD 199
           E+++VT+   G  ++NV+ D   Q + +         Y L   L   ++P  C+    S 
Sbjct: 12  EEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLST 71

Query: 200 KFELKLT 206
           K E+ L 
Sbjct: 72  KIEICLA 78

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSD 199
             +++T+ +   Q+ +V+ + + + +           Y L L L HP++P        S 
Sbjct: 19  SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST 78

Query: 200 KFELKLT 206
           K E+KL 
Sbjct: 79  KIEIKLK 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	99.56
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	99.38
4fei_A	102	Heat shock protein-related protein; stress respons	99.35
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	99.32
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	99.32
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	99.27
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	99.25
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	99.25
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	99.23
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.14
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	99.11
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	99.02
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	98.85
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	98.83
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	98.59
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	98.55
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.66
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	97.51
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	97.36
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	97.32
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	97.19
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	96.98
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	96.86
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	96.86
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	96.83
3igf_A	374	ALL4481 protein; two-domained protein consisting o	96.67
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	96.27

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=99.56  E-value=9.4e-15  Score=118.18  Aligned_cols=66  Identities=15%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             CcEEEEEEcCCCC--CCcceEEEeCCEEEEEecceEEEcCCCCCc-cCCCeeeEEECCCcEEEEEEecc
Q psy2549         145 EDMLVTIQLPGEQ--RENVDCDLTTQHVDIRSIKYRLALPLPHPV-LPHLCQATWDSDKFELKLTLRLT  210 (218)
Q Consensus       145 e~LvV~I~LPg~~--~~dI~LdV~e~~L~L~s~kY~L~l~LP~pV-d~d~~kAkfd~~~g~L~VTLpv~  210 (218)
                      +.|+|+|++|.++  +++++++|+++.|.+++++|+|+|+|||+| +.++++|+|+.++|.|+||||+.
T Consensus        13 e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLpK~   81 (134)
T 2k8q_A           13 EFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAKL   81 (134)
T ss_dssp             SEEEEEEECCSSCCCSSSCCCEECSSSEEECSSSSCEEECCSSCEECCSSCEEEEETTTTEEEEEEEES
T ss_pred             CEEEEEEEcCccccCccccEEEEeCCEEEEecCCeEEEecCCCeeecCCCcceeEeccCCEEEEEEeCC
Confidence            7999999999999  899999999999999999999999999999 88999999999999999999986

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=99.38  E-value=3.3e-12  Score=100.80  Aligned_cols=80  Identities=20%  Similarity=0.273  Sum_probs=71.5

Q ss_pred             CCCCCCeEEEEEEeeccchhhhhccCCCCCCCCCCCcEEEEEEcCCCC--CCcceEEEeCCEEEEEecceEEEcCCCCCc
Q psy2549         110 DPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQ--RENVDCDLTTQHVDIRSIKYRLALPLPHPV  187 (218)
Q Consensus       110 d~r~~PeY~i~ykq~V~teDvflgm~~k~Pss~~~e~LvV~I~LPg~~--~~dI~LdV~e~~L~L~s~kY~L~l~LP~pV  187 (218)
                      |...+|.|+|.  |                   ..+.++|.|.+|.++  ++++++.|.++.+.+.+++|+|+|.||++|
T Consensus        13 ~~~iTP~F~it--Q-------------------Ddefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~PYyLRL~lP~~v   71 (115)
T 3eud_A           13 DKMITPRFSIT--Q-------------------DEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHEL   71 (115)
T ss_dssp             -CCBCCCEEEE--E-------------------CSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEETTEEEEEECSSCE
T ss_pred             CCEeCCcEEEE--E-------------------CCCEEEEEEEcCceecccCccEEEEeCCEEEEecCCeEEEEecCcce
Confidence            55678999983  2                   236999999999988  889999999999999999999999999999


Q ss_pred             -cCCCeeeEEECCCcEEEEEEecc
Q psy2549         188 -LPHLCQATWDSDKFELKLTLRLT  210 (218)
Q Consensus       188 -d~d~~kAkfd~~~g~L~VTLpv~  210 (218)
                       +.++++|+|+.++|.++|+||+.
T Consensus        72 ved~~~~A~YD~d~g~~~v~lpK~   95 (115)
T 3eud_A           72 IDDERSTAQYDSKDECINVKVAKL   95 (115)
T ss_dssp             ECSTTCEEEEETTTTEEEEEEEES
T ss_pred             ecCCCcceEEeCCCcEEEEEEcCC
Confidence             55889999999999999999987

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=99.35  E-value=4.1e-12  Score=96.33  Aligned_cols=65  Identities=15%  Similarity=0.254  Sum_probs=61.1

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec---------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEec
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI---------------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRL  209 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~---------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv  209 (218)
                      +.++|+++|||+++++|+|.+.++.|.|++.               .|++.+.||..|+.+.++|+|.+  |+|+|+||+
T Consensus        16 ~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~--GvL~I~lpK   93 (102)
T 4fei_A           16 THLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAG--GVLTVRFEK   93 (102)
T ss_dssp             TEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEET--TEEEEEEEB
T ss_pred             CEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEEC--CEEEEEEEc
Confidence            6899999999999999999999999999763               48999999999999999999998  999999999


Q ss_pred             cc
Q psy2549         210 TR  211 (218)
Q Consensus       210 ~R  211 (218)
                      ..
T Consensus        94 ~~   95 (102)
T 4fei_A           94 LR   95 (102)
T ss_dssp             SS
T ss_pred             cC
Confidence            75

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=99.32  E-value=7.4e-12  Score=93.89  Aligned_cols=66  Identities=14%  Similarity=0.225  Sum_probs=60.6

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCcEE
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKFEL  203 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~--------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L  203 (218)
                      .+.++|.++|||++.++|+|.+.++.|.|++.                    .|.+.+.||..|+.+.++|+|.+  |+|
T Consensus        13 ~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~--GvL   90 (100)
T 3gla_A           13 VNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAGRN--GVL   90 (100)
T ss_dssp             SSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEEET--TEE
T ss_pred             CCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEEeC--CEE
Confidence            36999999999999999999999999999863                    37889999999999999999998  999


Q ss_pred             EEEEeccc
Q psy2549         204 KLTLRLTR  211 (218)
Q Consensus       204 ~VTLpv~R  211 (218)
                      +|+||+..
T Consensus        91 ~I~~pK~~   98 (100)
T 3gla_A           91 EIRIPKRP   98 (100)
T ss_dssp             EEEEEBC-
T ss_pred             EEEEecCC
Confidence            99999864

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=99.32  E-value=6.5e-12  Score=92.74  Aligned_cols=66  Identities=12%  Similarity=0.163  Sum_probs=61.4

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCcEEEEEEe
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKFELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkfd-~~~g~L~VTLp  208 (218)
                      ..+.++|.++|||+++++|+|.|.++.|.|++.             .|.+.+.||..|+.++++|+|. +  |+|+|+||
T Consensus         5 ~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~--GvL~I~lP   82 (85)
T 3q9p_A            5 TADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPE--GTLTVEAP   82 (85)
T ss_dssp             CCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTT--SEEEEEEE
T ss_pred             cCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCC--CEEEEEEE
Confidence            457999999999999999999999999999874             3889999999999999999998 7  99999999


Q ss_pred             cc
Q psy2549         209 LT  210 (218)
Q Consensus       209 v~  210 (218)
                      +.
T Consensus        83 K~   84 (85)
T 3q9p_A           83 MP   84 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=99.27  E-value=9.7e-12  Score=92.46  Aligned_cols=66  Identities=9%  Similarity=0.135  Sum_probs=60.1

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEec
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLRL  209 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLpv  209 (218)
                      .+.++|.++|||+++++|+|.|.++.|.|++.             .|.+.+.||..|+.+.++|+| .+  |+|+|+||+
T Consensus         5 ~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~--GvL~I~~pK   82 (90)
T 2y1y_A            5 KDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSD--GVLTVNGPR   82 (90)
T ss_dssp             -CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTT--SEEEEEECB
T ss_pred             CCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCC--CEEEEEEEc
Confidence            47899999999999999999999999999874             288999999999999999999 78  999999998


Q ss_pred             cc
Q psy2549         210 TR  211 (218)
Q Consensus       210 ~R  211 (218)
                      ..
T Consensus        83 ~~   84 (90)
T 2y1y_A           83 KQ   84 (90)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=99.25  E-value=2.3e-11  Score=94.88  Aligned_cols=66  Identities=15%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeC-CEEEEEec----------------ceEEEcCCCCCccCCCe-eeEEECCCcEEEEE
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTT-QHVDIRSI----------------KYRLALPLPHPVLPHLC-QATWDSDKFELKLT  206 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e-~~L~L~s~----------------kY~L~l~LP~pVd~d~~-kAkfd~~~g~L~VT  206 (218)
                      +.++|.++|||+++++|+|.+.+ +.|.|++.                .|++.+.||..|+.+++ +|+|.+  |+|+|+
T Consensus        34 ~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~--GvL~I~  111 (123)
T 3aab_A           34 GYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN--GVLTIR  111 (123)
T ss_dssp             TEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEET--TEEEEE
T ss_pred             CEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcC--CEEEEE
Confidence            68999999999999999999999 99999986                58999999999999999 999998  999999


Q ss_pred             Eecccc
Q psy2549         207 LRLTRE  212 (218)
Q Consensus       207 Lpv~Re  212 (218)
                      ||+..+
T Consensus       112 lPK~~~  117 (123)
T 3aab_A          112 IPIAGT  117 (123)
T ss_dssp             EEGGGE
T ss_pred             EEcCCC
Confidence            998754

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=99.25  E-value=2.6e-11  Score=92.11  Aligned_cols=67  Identities=13%  Similarity=0.164  Sum_probs=61.6

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATW-DSDKFELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~k-------------Y~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|.++|||++.++|+|.|.++.|.|++.+             |.+.+.||..|+.+.++|+| .+  |+|+|+||
T Consensus         9 ~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~n--GvL~I~lP   86 (101)
T 2wj5_A            9 DPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPE--GVLSIQAT   86 (101)
T ss_dssp             CSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTT--SEEEEEEC
T ss_pred             eCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCC--CEEEEEEE
Confidence            4478999999999999999999999999998742             88999999999999999999 78  99999999


Q ss_pred             ccc
Q psy2549         209 LTR  211 (218)
Q Consensus       209 v~R  211 (218)
                      +..
T Consensus        87 K~~   89 (101)
T 2wj5_A           87 PAS   89 (101)
T ss_dssp             BCC
T ss_pred             CCC
Confidence            864

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=99.23  E-value=3.6e-11  Score=92.19  Aligned_cols=68  Identities=10%  Similarity=0.138  Sum_probs=62.0

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|.++|||+++++|+|.|.++.|.|++.             .|.+.+.||..|+.++++|+| .+  |+|+|+||
T Consensus        10 ~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~--GvL~I~~P   87 (106)
T 3l1e_A           10 DRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSAD--GMLTFSGP   87 (106)
T ss_dssp             CSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTT--SEEEEEEE
T ss_pred             cCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCC--CEEEEEEE
Confidence            347999999999999999999999999999873             288999999999999999999 78  99999999


Q ss_pred             cccc
Q psy2549         209 LTRE  212 (218)
Q Consensus       209 v~Re  212 (218)
                      +...
T Consensus        88 K~~~   91 (106)
T 3l1e_A           88 KIPS   91 (106)
T ss_dssp             BCCC
T ss_pred             ccCc
Confidence            8643

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=99.14  E-value=1e-10  Score=95.26  Aligned_cols=65  Identities=20%  Similarity=0.293  Sum_probs=60.2

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec---------------------ceEEEcCCCCCccCCCeeeEEECCCcEE
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI---------------------KYRLALPLPHPVLPHLCQATWDSDKFEL  203 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~---------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L  203 (218)
                      +.++|+++|||+++++|+|.|.++.|.|++.                     .|.+.+.||..|+.+.++|+|.+  |+|
T Consensus        66 ~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~~n--GvL  143 (161)
T 4eld_A           66 QHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFEN--GVL  143 (161)
T ss_dssp             SEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEEET--TEE
T ss_pred             CEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEEEC--CEE
Confidence            6999999999999999999999999999652                     47799999999999999999998  999


Q ss_pred             EEEEeccc
Q psy2549         204 KLTLRLTR  211 (218)
Q Consensus       204 ~VTLpv~R  211 (218)
                      +|+||+..
T Consensus       144 ~I~lpK~~  151 (161)
T 4eld_A          144 SVILPKAE  151 (161)
T ss_dssp             EEEEEBCG
T ss_pred             EEEEEcCC
Confidence            99999864

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=99.11  E-value=2.2e-10  Score=92.80  Aligned_cols=67  Identities=16%  Similarity=0.182  Sum_probs=60.5

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEe-CCEEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCcE
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLT-TQHVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKFE  202 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~-e~~L~L~s~--------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~  202 (218)
                      .+.++|+++|||+++++|+|.|. ++.|.|++.                    .|++.+.||..|+.+.++|+|.+  |+
T Consensus        52 ~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~n--Gv  129 (151)
T 1gme_A           52 PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN--GV  129 (151)
T ss_dssp             SSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEET--TE
T ss_pred             CCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEEEC--CE
Confidence            47899999999999999999995 689999862                    38899999999999999999988  99


Q ss_pred             EEEEEecccc
Q psy2549         203 LKLTLRLTRE  212 (218)
Q Consensus       203 L~VTLpv~Re  212 (218)
                      |+|+||+..+
T Consensus       130 L~I~lPK~~~  139 (151)
T 1gme_A          130 LTVTVPKAEV  139 (151)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEccCc
Confidence            9999998753

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=99.02  E-value=5.2e-10  Score=93.27  Aligned_cols=67  Identities=9%  Similarity=0.135  Sum_probs=61.0

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCcEEEEEEe
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKFELKLTLR  208 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-------------kY~L~l~LP~pVd~d~~kAkf-d~~~g~L~VTLp  208 (218)
                      ..+.++|.++|||+++++|+|.|.++.|.|++.             .|.+.+.||..|+.++++|+| .+  |+|+|+||
T Consensus        71 ~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~d--GvL~I~lP  148 (175)
T 2klr_A           71 EKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD--GVLTVNGP  148 (175)
T ss_dssp             CCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTT--SCEEEEEE
T ss_pred             cCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCC--CEEEEEEE
Confidence            348999999999999999999999999999874             278999999999999999999 68  99999999


Q ss_pred             ccc
Q psy2549         209 LTR  211 (218)
Q Consensus       209 v~R  211 (218)
                      ++.
T Consensus       149 K~~  151 (175)
T 2klr_A          149 RKQ  151 (175)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            864

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=98.85  E-value=4.1e-09  Score=95.19  Aligned_cols=67  Identities=13%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             CCCcEEEEEEc-CCCCCCcceEEEeCCEEEEEec----------------ceEEEcCCCCCccCCCeeeEEECCCcEEEE
Q psy2549         143 SCEDMLVTIQL-PGEQRENVDCDLTTQHVDIRSI----------------KYRLALPLPHPVLPHLCQATWDSDKFELKL  205 (218)
Q Consensus       143 ~~e~LvV~I~L-Pg~~~~dI~LdV~e~~L~L~s~----------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~V  205 (218)
                      ..+.++|+++| ||+++++|+|+|.++.|+|++.                .|.+.+.||..||+++++|+|.+  |+|+|
T Consensus       231 ~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~d--GvL~i  308 (314)
T 2bol_A          231 GSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVD--GLMVV  308 (314)
T ss_dssp             SCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEET--TEEEE
T ss_pred             CCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeC--CEEEE
Confidence            34689999999 9999999999999999999874                27899999999999999999998  99999


Q ss_pred             EEeccc
Q psy2549         206 TLRLTR  211 (218)
Q Consensus       206 TLpv~R  211 (218)
                      +||+..
T Consensus       309 ~~Pk~~  314 (314)
T 2bol_A          309 EAPLFK  314 (314)
T ss_dssp             EEEEEC
T ss_pred             EEecCC
Confidence            999863

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=98.83  E-value=8.6e-09  Score=93.07  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             cEEEEEEcCCCCCCcceEEEeCCEEEEEec------------ceEEEcCCCCCccCCCeeeEEE-CCCcEEEEEEeccc
Q psy2549         146 DMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------KYRLALPLPHPVLPHLCQATWD-SDKFELKLTLRLTR  211 (218)
Q Consensus       146 ~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------------kY~L~l~LP~pVd~d~~kAkfd-~~~g~L~VTLpv~R  211 (218)
                      .++|+++|||+++++|+|.|.++.|.|++.            .|.+.+.||..|+.++++|+|. +  |+|+|+||+..
T Consensus       113 ~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~n--GVL~I~lPK~~  189 (314)
T 2bol_A          113 HFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTD--DVLVIEAPVNE  189 (314)
T ss_dssp             EEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSS--SEEEEEEEBSS
T ss_pred             EEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCC--CEEEEEEeccC
Confidence            799999999999999999999999999874            4899999999999999999999 8  99999999864

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=98.59  E-value=1.4e-07  Score=68.90  Aligned_cols=66  Identities=23%  Similarity=0.316  Sum_probs=60.4

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      +.+.|.|.+||+..+++.++++++.|.|+..     .|.+.+.|+++|+++.+++++.+  +.|+|+|+++.+
T Consensus        12 ~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~--~~l~i~L~K~~~   82 (92)
T 2xcm_C           12 EEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLS--TKIEICLAKADI   82 (92)
T ss_dssp             TEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECS--SCEEEEEEBSSS
T ss_pred             CEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEEC--CEEEEEEEcCCC
Confidence            5899999999999999999999999999863     69999999999999999999987  789999998754

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=98.55  E-value=1.2e-07  Score=72.27  Aligned_cols=66  Identities=18%  Similarity=0.399  Sum_probs=60.5

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      +.+.|.|.|||+..+++.++++++.|.|+..     .|.+.+.|+++|+++.+++++..  +.|+|+|+++..
T Consensus        19 ~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~--~~l~i~L~K~~~   89 (114)
T 1rl1_A           19 SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLS--TKIEIKLKKPEA   89 (114)
T ss_dssp             SEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECS--SSEEEEEECSSC
T ss_pred             CEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEEC--CEEEEEEEcCCC
Confidence            6899999999999999999999999999863     69999999999999999999988  889999998754

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.66  E-value=0.00041  Score=53.89  Aligned_cols=82  Identities=12%  Similarity=0.172  Sum_probs=65.8

Q ss_pred             CCCCCCCCeEEEEEEeeccchhhhhccCCCCCCCCCCCcEEEEEEcC-CC-CCCcceEEEeCCEEEEEe-----cceEEE
Q psy2549         108 NLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLP-GE-QRENVDCDLTTQHVDIRS-----IKYRLA  180 (218)
Q Consensus       108 ~~d~r~~PeY~i~ykq~V~teDvflgm~~k~Pss~~~e~LvV~I~LP-g~-~~~dI~LdV~e~~L~L~s-----~kY~L~  180 (218)
                      .+.+...|.|.--  |                   ..+++.|.|.|| ++ +.+++.++++++.|.|..     ..|.+.
T Consensus        13 ~~nG~~~~~y~W~--Q-------------------t~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~   71 (124)
T 1wgv_A           13 SYNGAVRENYTWS--Q-------------------DYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLME   71 (124)
T ss_dssp             SSSSBCCSSCEEE--E-------------------ETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEE
T ss_pred             ccCCCcCCcEEEE--E-------------------cccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEc
Confidence            5667778888863  2                   125789999999 67 799999999999999976     248899


Q ss_pred             cCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         181 LPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       181 l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      ..|.++|+++.++-+... ...|+|+|.++.
T Consensus        72 ~~L~~~I~~e~S~w~i~~-~k~v~i~L~K~~  101 (124)
T 1wgv_A           72 GKLTHKINTESSLWSLEP-GKCVLVNLSKVG  101 (124)
T ss_dssp             EEBSSCBCTTTCEEEECT-TSEEEEEECBSS
T ss_pred             ccccCcCCCcCCEEEEeC-CCEEEEEEEECC
Confidence            999999999988766654 235999998874

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.51  E-value=0.00064  Score=52.98  Aligned_cols=66  Identities=20%  Similarity=0.226  Sum_probs=58.5

Q ss_pred             CcEEEEEEcCCC---CCCcceEEEeCCEEEEEec-----ceEEEcC-CCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         145 EDMLVTIQLPGE---QRENVDCDLTTQHVDIRSI-----KYRLALP-LPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LPg~---~~~dI~LdV~e~~L~L~s~-----kY~L~l~-LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      +.+.|.|.||++   ..+++.++++++.|.|+..     .|.+.+. |-++|++++++.+...  +.++|+|.++.+
T Consensus        30 ~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~--~kVei~L~K~~~  104 (127)
T 1x5m_A           30 KFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKT--DTVLILCRKKVE  104 (127)
T ss_dssp             TEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEET--TEEEEEEECSSS
T ss_pred             CEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeC--CEEEEEEEECCC
Confidence            689999999998   7899999999999999853     6999995 9999999998877766  889999988753

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.36  E-value=0.0005  Score=54.79  Aligned_cols=65  Identities=14%  Similarity=0.273  Sum_probs=57.6

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEE
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----------------KYRLALPLPHPVLPHLCQATWDSDKFELKLTL  207 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-----------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTL  207 (218)
                      +.++|.|.++++..+++.++++++.|.|+..                 .|.+.+.|-++|+++.++.+...  ..++|+|
T Consensus        30 ~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~v~~--~kIeI~L  107 (134)
T 1wh0_A           30 DSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTA--SRIDICL  107 (134)
T ss_dssp             TEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEECS--SEEEEEE
T ss_pred             CEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEEEeC--CEEEEEE
Confidence            5899999999999999999999999999752                 79999999999999988777766  8899999


Q ss_pred             eccc
Q psy2549         208 RLTR  211 (218)
Q Consensus       208 pv~R  211 (218)
                      .++.
T Consensus       108 ~K~e  111 (134)
T 1wh0_A          108 RKRQ  111 (134)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            8863

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=97.32  E-value=0.00086  Score=52.05  Aligned_cols=67  Identities=7%  Similarity=0.016  Sum_probs=57.0

Q ss_pred             CcEEEEEEcCC---CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         145 EDMLVTIQLPG---EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LPg---~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      +++.|+|.||.   ++++++.++++.+.|.|...  .|.+...|.++|+++.+.-+... .+.|.|+|.+..+
T Consensus        26 ~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~g~L~~~I~~deS~w~i~~-~~~i~i~L~K~~~   97 (121)
T 3qor_A           26 SELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIAD-GAVVTVHLEKINK   97 (121)
T ss_dssp             SEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTSCCSEEEEBSSCBCGGGCEEEEET-TTEEEEEEEBSSS
T ss_pred             ceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCcceEEeccccccccccccEEEEcC-CCEEEEEEEECCC
Confidence            68999999996   67999999999999999765  68899999999999988766665 1389999988754

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=97.19  E-value=0.0017  Score=50.75  Aligned_cols=68  Identities=9%  Similarity=0.048  Sum_probs=57.3

Q ss_pred             CCcEEEEEEcC-C--CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         144 CEDMLVTIQLP-G--EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       144 ~e~LvV~I~LP-g--~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      .+++.|.|.|| +  ++.+++.++++++.|.|+..  .|.+...|.++|+++.++-+... .+.|.|+|.+..+
T Consensus        16 ~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~~~L~~~I~~e~s~w~i~~-~k~v~i~L~K~~~   88 (131)
T 1wfi_A           16 LAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIED-GKVVTVHLEKINK   88 (131)
T ss_dssp             SSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEET-TTEEEEEEEBSSS
T ss_pred             CCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCceEEEecccccccccccCEEEEcC-CCEEEEEEEECCC
Confidence            36889999999 4  78999999999999999863  47899999999999988777765 1379999988754

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.00043  Score=54.79  Aligned_cols=63  Identities=13%  Similarity=0.249  Sum_probs=53.4

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----------cceEEEcCCCCCccCCCeeeEEECCCcE-EEEEEeccc
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----------IKYRLALPLPHPVLPHLCQATWDSDKFE-LKLTLRLTR  211 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s-----------~kY~L~l~LP~pVd~d~~kAkfd~~~g~-L~VTLpv~R  211 (218)
                      +.+.|+|.||++  .++.++++++.|.|++           ..|.+.+.|.++|++++++.+...  +. ++|+|.++.
T Consensus        23 ~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~v~~--~~~vei~L~K~~   97 (134)
T 2cg9_X           23 NYVLITVSIADC--DAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKVAN--GQHYFLKLYKKD   97 (134)
T ss_dssp             SEEEEECCCSSE--ESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEEECC--C--CEEEEEECS
T ss_pred             CEEEEEEEecCC--CceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEEECC--CEEEEEEEEECC
Confidence            568999999997  4889999999999973           359999999999999999988866  55 999998864

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=96.86  E-value=0.0032  Score=49.27  Aligned_cols=63  Identities=5%  Similarity=0.040  Sum_probs=53.1

Q ss_pred             CcEEEEEEcC-CCCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecc
Q psy2549         145 EDMLVTIQLP-GEQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLT  210 (218)
Q Consensus       145 e~LvV~I~LP-g~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~  210 (218)
                      +.+.|.|.|| ++..+++.++++++.|.|...  . .+...|.++|+++.++-+...  +.|.|+|.+.
T Consensus        14 ~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~g~~-~~~~~L~~~I~~e~S~w~i~~--~kv~i~L~K~   79 (131)
T 2o30_A           14 NEINIQFPVTGDADSSAIKIRMVGKKICVKNQGEI-VIDGELLHEVDVSSLWWVING--DVVDVNVTKK   79 (131)
T ss_dssp             TEEEEEEECC---CCSCEEEEEETTEEEEEETTEE-EEEEEBSSCEEEEEEEEEEET--TEEEEEEEES
T ss_pred             CEEEEEEECCCCCCccceEEEEECCEEEEEECCEe-eEccccccccccccCEEEEeC--CEEEEEEEEC
Confidence            6889999996 778999999999999999753  4 789999999999988777766  6699999887

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=96.86  E-value=0.0016  Score=50.58  Aligned_cols=64  Identities=11%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe------cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS------IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s------~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      .+.+.|+|.||+.  +++.++++++.|.+++      ..|.+.+.|-++|++++++.+...  +.++|+|.++.
T Consensus        12 ~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~--~kiei~L~K~~   81 (125)
T 1ejf_A           12 RDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD--RSILCCLRKGE   81 (125)
T ss_dssp             SSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECS--SCEEEEEEESS
T ss_pred             CCEEEEEEEecCC--CceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECC--CEEEEEEEECC
Confidence            3679999999995  7999999999999984      259999999999999988877755  67999998874

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=96.83  E-value=0.0038  Score=50.69  Aligned_cols=67  Identities=19%  Similarity=0.385  Sum_probs=55.8

Q ss_pred             CcEEEEEEcC-CCCCCcceEEEeCCEEEEEec-ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         145 EDMLVTIQLP-GEQRENVDCDLTTQHVDIRSI-KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LP-g~~~~dI~LdV~e~~L~L~s~-kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      +++.|+|.|| +++.++|.++++.+.|.|... ...+...|.++|+++.++-+... ...|.|+|.++..
T Consensus        23 ~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~kg~~~l~g~L~~~I~~eeS~w~i~~-~k~v~I~L~K~~~   91 (157)
T 2rh0_A           23 EEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDSTIADEGTWTLED-RKMVRIVLTKTKR   91 (157)
T ss_dssp             SEEEEEEECCTTCCGGGEEEEECSSEEEEEETTEEEEEEEBSSCBCGGGCEEEEEC-CCEEEEEEEBSSC
T ss_pred             CEEEEEEECCCCCcccceEEEEecCEEEEEECCEEEEeeccccccCccccEEEEcC-CcEEEEEEEEcCC
Confidence            6899999998 778999999999999999753 23589999999999988777765 2358999988753

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=96.67  E-value=0.005  Score=56.25  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=56.5

Q ss_pred             cEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccC-CCeeeEEECCCcEEEEEEe
Q psy2549         146 DMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLP-HLCQATWDSDKFELKLTLR  208 (218)
Q Consensus       146 ~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~kY~L~l~LP~pVd~-d~~kAkfd~~~g~L~VTLp  208 (218)
                      .+.+++.||++++++|+|.-.++.|.|+...|++.+.||....- .-+.|+|..  +.|+|++-
T Consensus       306 ~~~~~l~lP~~~~~~~~l~~~gdeL~v~~g~~rR~i~LP~~L~~~~v~~A~~~~--~~L~i~~~  367 (374)
T 3igf_A          306 NRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRNIFLPPALSGRPITGAKFQN--NYLIISFL  367 (374)
T ss_dssp             TTEEEEECTTCCGGGCEEEEETTEEEEEETTEEEEEECCTTTTTCCEEEEEEET--TEEEEEEC
T ss_pred             cEEEEEECCCCCHHHeEEEEECCeEEEEECCEeecccCCHHHcCCCccccEEEC--CEEEEEEe
Confidence            67899999999999999999999999999999999999999775 567999999  99999863

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=96.27  E-value=0.0039  Score=50.36  Aligned_cols=62  Identities=8%  Similarity=0.286  Sum_probs=52.6

Q ss_pred             CcEEEEEEcCCCCCCcceEEEe-CCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLT-TQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~-e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      +.++|+|.||++  .++.++++ ++.|.|++.     .|.+.|.|=++|+++ ++.+...  +.++|+|.++.
T Consensus        14 ~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe-S~~~v~~--~kIei~L~K~e   81 (150)
T 2kmw_A           14 DKVYLTVALPDA--KDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE-YRKNVGL--RNIIFSIQKEE   81 (150)
T ss_dssp             SEEEEEECCSSE--EEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE-EEEEEES--SSEEEEEEECC
T ss_pred             CEEEEEEEeCCC--CceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc-ceEEecC--CEEEEEEEECC
Confidence            579999999997  58899999 889999863     599999999999999 7777655  67999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	3e-05

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIR-----SIKYRLALPLPHPVLPHLCQATWDSD 199
             +++T+ +   Q+ +V+ + + + +           Y L L L HP++P        S 
Sbjct: 12  SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST 71

Query: 200 KFELKL 205
           K E+KL
Sbjct: 72  KIEIKL 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	99.2
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	99.04
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	97.89
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	96.98
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	96.9
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	96.62
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	95.43

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.20  E-value=3.2e-11  Score=90.81  Aligned_cols=66  Identities=20%  Similarity=0.272  Sum_probs=60.5

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec---------------------ceEEEcCCCCCccCCCeeeEEECCCcE
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI---------------------KYRLALPLPHPVLPHLCQATWDSDKFE  202 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~---------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~  202 (218)
                      .+.++|.++|||++.++|+|.|.++.|.|++.                     .|++.+.||..|+.++++|+|++  |+
T Consensus        19 ~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A~~~n--Gv   96 (115)
T d1shsa_          19 DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFEN--GV   96 (115)
T ss_dssp             SSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEEET--TE
T ss_pred             CCEEEEEEECCCCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEEEEEC--CE
Confidence            47899999999999999999999999999763                     26789999999999999999999  99


Q ss_pred             EEEEEeccc
Q psy2549         203 LKLTLRLTR  211 (218)
Q Consensus       203 L~VTLpv~R  211 (218)
                      |+|+||+..
T Consensus        97 L~I~lpK~~  105 (115)
T d1shsa_          97 LSVILPKAE  105 (115)
T ss_dssp             EEEEEEBCG
T ss_pred             EEEEEEeCC
Confidence            999999864

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.04  E-value=3.8e-10  Score=88.90  Aligned_cols=66  Identities=17%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCcE
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKFE  202 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~-~L~L~s~--------------------kY~L~l~LP~pVd~d~~kAkfd~~~g~  202 (218)
                      .+.++|+++|||+.+++|+|+|+++ .|.+++.                    .|.+.+.||..|+.++++|+|.+  |+
T Consensus        51 ~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n--Gv  128 (150)
T d1gmea_          51 PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN--GV  128 (150)
T ss_dssp             SSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEET--TE
T ss_pred             CCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEEEEEC--CE
Confidence            4789999999999999999999875 5677642                    37789999999999999999998  99


Q ss_pred             EEEEEeccc
Q psy2549         203 LKLTLRLTR  211 (218)
Q Consensus       203 L~VTLpv~R  211 (218)
                      |+||||+..
T Consensus       129 L~I~lpK~~  137 (150)
T d1gmea_         129 LTVTVPKAE  137 (150)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999999864

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.3e-05  Score=57.02  Aligned_cols=66  Identities=18%  Similarity=0.384  Sum_probs=58.8

Q ss_pred             CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       144 ~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-----kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      .+.+.|.|.+|++..+++.+++.++.|.+...     .|.+.+.|-++|+++.++.++..  +.++|+|.++.
T Consensus        11 ~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~~~--~kiei~L~K~~   81 (92)
T d1rl1a_          11 ESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLS--TKIEIKLKKPE   81 (92)
T ss_dssp             SSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECS--SSEEEEEECSS
T ss_pred             CCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEEeC--CEEEEEEEECC
Confidence            36899999999999999999999999998753     69999999999999998888877  78999998763

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0011  Score=50.93  Aligned_cols=66  Identities=14%  Similarity=0.270  Sum_probs=59.4

Q ss_pred             CcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----------------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEE
Q psy2549         145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----------------KYRLALPLPHPVLPHLCQATWDSDKFELKLTL  207 (218)
Q Consensus       145 e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~-----------------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTL  207 (218)
                      +.++|.|.+.++..+++.++++++.|.|.-+                 .|.+.+.|-++|+++.++.+...  ..++|+|
T Consensus        30 ~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~v~~--~kiei~L  107 (134)
T d1wh0a_          30 DSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTA--SRIDICL  107 (134)
T ss_dssp             TEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEECS--SEEEEEE
T ss_pred             CEEEEEEEeCCCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEEEeCC--CEEEEEE
Confidence            5899999999999999999999999999742                 59999999999999999988887  8899999


Q ss_pred             ecccc
Q psy2549         208 RLTRE  212 (218)
Q Consensus       208 pv~Re  212 (218)
                      .++..
T Consensus       108 ~K~~~  112 (134)
T d1wh0a_         108 RKRQS  112 (134)
T ss_dssp             EESSS
T ss_pred             EeCCC
Confidence            88653

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00076  Score=49.11  Aligned_cols=65  Identities=11%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       143 ~~e~LvV~I~LPg~~~~dI~LdV~e~~L~L~s~------kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      ..+.+.|+|.+|+  ..++.++++.+.|.|+..      .|.+.+.|-++|+++.++.+...  +.++|+|.++.
T Consensus        11 t~~~V~i~I~v~~--~~~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~--~kiei~L~K~~   81 (110)
T d1ejfa_          11 RRDYVFIEFCVED--SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD--RSILCCLRKGE   81 (110)
T ss_dssp             CSSEEEEEECCTT--EEEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECS--SCEEEEEEESS
T ss_pred             CCCEEEEEEEeCC--CCCceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeC--CEEEEEEEEcC
Confidence            4579999999997  467888888888888642      69999999999999988888777  77999998764

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0035  Score=46.40  Aligned_cols=66  Identities=12%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             CcEEEEEEcCC--CCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCcEEEEEEeccc
Q psy2549         145 EDMLVTIQLPG--EQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTR  211 (218)
Q Consensus       145 e~LvV~I~LPg--~~~~dI~LdV~e~~L~L~s-----~kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~R  211 (218)
                      +++.|.|.||.  ++.++|.++++.+.|.+..     ..|.+...|.++|+++.+.-++.. ..+|.+.|.+..
T Consensus        29 ~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~deS~w~i~~-~~~~i~~lkK~~  101 (124)
T d1wgva_          29 TDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEP-GKCVLVNLSKVG  101 (124)
T ss_dssp             TEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECT-TSEEEEEECBSS
T ss_pred             CEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccccEEEEeC-CCEEEEEEEecC
Confidence            68999999996  4578999999999999874     268899999999999998877765 234555555543

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.035  Score=41.53  Aligned_cols=67  Identities=9%  Similarity=0.049  Sum_probs=53.1

Q ss_pred             CcEEEEEEcC---CCCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCcEEEEEEecccc
Q psy2549         145 EDMLVTIQLP---GEQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKFELKLTLRLTRE  212 (218)
Q Consensus       145 e~LvV~I~LP---g~~~~dI~LdV~e~~L~L~s~--kY~L~l~LP~pVd~d~~kAkfd~~~g~L~VTLpv~Re  212 (218)
                      +++.|.|.||   ++++++|.++++.+.|.|...  ...+.-.|.++|+++.+.=++.. .+.|.|+|.++.+
T Consensus        17 ~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~~ll~g~L~~~I~~des~W~ied-~~~l~i~L~K~~~   88 (131)
T d1wfia_          17 AELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIED-GKVVTVHLEKINK   88 (131)
T ss_dssp             SEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEET-TTEEEEEEEBSSS
T ss_pred             CEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCceeecccccCcccccccEEEEeC-CCEEEEEEEECCC
Confidence            5677777665   577999999999999999753  35677799999999988766653 4689999998654